BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048364
(400 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224075377|ref|XP_002304609.1| predicted protein [Populus trichocarpa]
gi|222842041|gb|EEE79588.1| predicted protein [Populus trichocarpa]
Length = 431
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 267/395 (67%), Positives = 325/395 (82%), Gaps = 1/395 (0%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+QL++ MHRQS+P D+FSIL LKSCTH NLT+IHHLHSHI+KLGF +HVYV+T LLH
Sbjct: 38 LQLYTHMHRQSIPFDTFSILFTLKSCTHLKNLTIIHHLHSHIIKLGFNTHVYVSTCLLHA 97
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
Y V SF A LFDE+P+RN VTWNTMI GYS+SG++ +AR FE MP+R+ ASWSAMI
Sbjct: 98 YAVMSFDQACDLFDEMPQRNIVTWNTMITGYSRSGSINKARSLFEAMPVRDAASWSAMIT 157
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y+N G D GL F+EM++NE PDQ+T+G+VLSGC+H+GS+GLL GKS HGF+VKN
Sbjct: 158 CYINNGFRDQGLSFFQEMMANENPKPDQVTVGSVLSGCAHMGSLGLLAGKSVHGFVVKNG 217
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
WELN I T+LVDMYAKCGF K A+ VF LM+ERNV +WTALICG+A G+ ++ LSLF+
Sbjct: 218 WELNVDIGTLLVDMYAKCGFFKNAVWVFVLMQERNVSTWTALICGAAQHGFCQEVLSLFK 277
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
MMQ GV+PNEMTFTG+L AC GL++EGRKYFKMI +E LEPRIQHYGCMVD+FGKA
Sbjct: 278 MMQEAGVRPNEMTFTGILNACARKGLIEEGRKYFKMI-KETGLEPRIQHYGCMVDMFGKA 336
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G LEEAYEVI+ M EPN++IWGSFL+ACK HKQFD+A+RVI Q LR +KPENDGG+++L
Sbjct: 337 GLLEEAYEVIKEMEFEPNIVIWGSFLSACKMHKQFDIADRVIGQVLRDIKPENDGGIYSL 396
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ DLY +N+KW+ AERVR L+LNQNVRKARGSS I
Sbjct: 397 VSDLYVLNKKWDDAERVRNLVLNQNVRKARGSSCI 431
>gi|449434194|ref|XP_004134881.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 436
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 253/397 (63%), Positives = 315/397 (79%), Gaps = 3/397 (0%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +SQMHRQSVP DSFSIL +LK+C NNL+++HHLH+HI KLGF +HV+VATSLLH
Sbjct: 41 LAFYSQMHRQSVPHDSFSILFMLKACASSNNLSILHHLHAHITKLGFTTHVFVATSLLHS 100
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
YV+ SF AR +FDE+P +N+VTWNTMI GYSK+G+V AR F+RMP R++ASWSAMIA
Sbjct: 101 YVLHSFQLARLVFDEMPHKNSVTWNTMISGYSKAGDVHTARQLFDRMPSRDLASWSAMIA 160
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
AY+N Y L LF++MI N G+ PDQM G++L+GC+H+GS+GLL GKS HGF+VKN
Sbjct: 161 AYINNRNYRGALLLFQDMIIN-GINPDQMAAGSILNGCAHMGSLGLLAGKSVHGFVVKNR 219
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
WELN ++ T+LVDMYAKCGFLKYA +F LM ERNV +WTALICG AH G ++AL LFE
Sbjct: 220 WELNLELGTVLVDMYAKCGFLKYACQIFNLMSERNVRTWTALICGLAHHGCCKEALVLFE 279
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ GV+PNE TFTGVL+ACVH GLV EGRKYF MI EE LE RIQHYGC VDL G++
Sbjct: 280 TMRHEGVEPNEFTFTGVLSACVHAGLVQEGRKYFNMI-EECGLEIRIQHYGCFVDLLGRS 338
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G LEEAY VI++MRLEPNVI+W S L+ACK+HK FD+AERVI+Q L ++P+N GV++L
Sbjct: 339 GLLEEAYGVIKSMRLEPNVIVWSSLLSACKQHKSFDLAERVIEQILEKIEPDNHAGVYSL 398
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
+ DLY + +KW+ AE +R L LNQ+VRK R S+I S
Sbjct: 399 VSDLYVLQDKWDDAENIRNL-LNQHVRKGRAYSLIRS 434
>gi|255541938|ref|XP_002512033.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549213|gb|EEF50702.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 319
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 228/320 (71%), Positives = 278/320 (86%), Gaps = 1/320 (0%)
Query: 76 LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF 135
+PERN +TWNTMI GYS+SGN+ +AR FFE MPLR+V SWSAMI AY+N G +D GL LF
Sbjct: 1 MPERNTITWNTMITGYSRSGNIDKARAFFEEMPLRDVGSWSAMITAYINHGRWDRGLLLF 60
Query: 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY 195
REM++N L PDQ+T+G VLSGC+H+G +GLL+GKSAHGFI+KN WELN +I T+LVDMY
Sbjct: 61 REMMTNSELKPDQVTVGTVLSGCTHMGFLGLLVGKSAHGFIMKNRWELNVEIGTVLVDMY 120
Query: 196 AKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT 255
KCG+LK A+ VF+LM+ERNV++WTALICG+A GYSE+ LSLF MMQ ++PNE+TFT
Sbjct: 121 VKCGYLKNAIRVFDLMKERNVMTWTALICGAAQHGYSEETLSLFNMMQEAKIRPNELTFT 180
Query: 256 GVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRL 315
G+L C H+GLV+EG+KYF+MI EEY LE RIQHYGCMVDLFGKAG L+EAY VI+TM++
Sbjct: 181 GILNVCAHSGLVEEGKKYFRMI-EEYGLERRIQHYGCMVDLFGKAGLLDEAYNVIKTMKV 239
Query: 316 EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAE 375
E NV+IWGSFL+ACKEHK+FDMAERVI+Q L+++KPENDGG++TL+CDLYT NEKW+ AE
Sbjct: 240 ENNVVIWGSFLSACKEHKKFDMAERVIEQVLKVIKPENDGGIYTLVCDLYTSNEKWDDAE 299
Query: 376 RVRKLMLNQNVRKARGSSVI 395
RVRKLMLNQNVRKARGSS I
Sbjct: 300 RVRKLMLNQNVRKARGSSFI 319
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 96/228 (42%), Gaps = 43/228 (18%)
Query: 3 LFSQMHRQS-VPSDSFSILHILKSCTH--FNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
LF +M S + D ++ +L CTH F L V H I+K + +V + T L+
Sbjct: 59 LFREMMTNSELKPDQVTVGTVLSGCTHMGFLGLLVGKSAHGFIMKNRWELNVEIGTVLVD 118
Query: 60 EYVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
YV + A ++FD + ERN +TW +I G ++ G E F
Sbjct: 119 MYVKCGYLKNAIRVFDLMKERNVMTWTALICGAAQHGYSEETLSLF-------------- 164
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
M+ + P+++T +L+ C+H G L+ + F +
Sbjct: 165 ------------------NMMQEAKIRPNELTFTGILNVCAHSG----LVEEGKKYFRMI 202
Query: 179 NEWELNEQIA--TILVDMYAKCGFLKYALMVFELME-ERNVISWTALI 223
E+ L +I +VD++ K G L A V + M+ E NV+ W + +
Sbjct: 203 EEYGLERRIQHYGCMVDLFGKAGLLDEAYNVIKTMKVENNVVIWGSFL 250
>gi|359472798|ref|XP_002274984.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 324
Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust.
Identities = 220/325 (67%), Positives = 271/325 (83%), Gaps = 1/325 (0%)
Query: 76 LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF 135
+P +N VTWNTMI YSKSG+V +AR FE+MPLR++ASWSAM+A Y+ G + GL LF
Sbjct: 1 MPHKNTVTWNTMITAYSKSGDVKKARLVFEQMPLRDLASWSAMVAGYMYGGEWHSGLALF 60
Query: 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY 195
REM+ NEGL PD++T+G+VLSGC+ +GS+GLL+G+S HGF KN WEL+ + T+LVDMY
Sbjct: 61 REMVVNEGLRPDKVTLGSVLSGCARMGSLGLLVGRSIHGFTAKNGWELSVDLGTVLVDMY 120
Query: 196 AKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT 255
AKCGFLK A VF+LM+E+NV SWTALICGSA GY ++ALS+FE+MQ GVKPNEMTFT
Sbjct: 121 AKCGFLKSAFRVFDLMQEKNVASWTALICGSAQHGYGKEALSMFELMQDMGVKPNEMTFT 180
Query: 256 GVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRL 315
G+L+AC GLV+EGRKYF I EEY LEPRIQH+GCMVDLFGKAG LEEAYE+I +M+L
Sbjct: 181 GILSACAQAGLVEEGRKYFNKI-EEYGLEPRIQHFGCMVDLFGKAGLLEEAYEIINSMKL 239
Query: 316 EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAE 375
EPNV++W SFL++CK HKQF++AERV +Q LR VKPENDGGV+TLI +L+ +N+KW+ AE
Sbjct: 240 EPNVVLWSSFLSSCKVHKQFELAERVTEQVLRTVKPENDGGVYTLISNLFVLNDKWDDAE 299
Query: 376 RVRKLMLNQNVRKARGSSVISSLSV 400
RVRKLM+NQ VRKARGSS I S SV
Sbjct: 300 RVRKLMVNQKVRKARGSSFIRSGSV 324
>gi|357511639|ref|XP_003626108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240992|gb|ABD32850.1| Pentatricopeptide repeat [Medicago truncatula]
gi|355501123|gb|AES82326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 417
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 223/391 (57%), Positives = 297/391 (75%), Gaps = 4/391 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+QL+S+MHR VP D+F IL LKS T L +IHHLH+HI+KLGF SH +++T LL+
Sbjct: 22 IQLYSKMHRNGVPIDTFCILFTLKSSTR---LPIIHHLHAHIIKLGFTSHFHISTCLLNS 78
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
YV SF A LFDE+P+R+ VTWNTMI GYS+ +V +AR F+ MP R++ SW MI+
Sbjct: 79 YVFLSFLDACILFDEMPQRDTVTWNTMILGYSRLEDVKKARQLFDEMPHRDIVSWCNMIS 138
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
AYLN G+Y L LFR M+ EG+ PDQ+ VLSGC+H+ GLL GKS HG+IVKN
Sbjct: 139 AYLNVGSYMQSLYLFRRMLFVEGIKPDQVIACLVLSGCAHVERHGLLGGKSVHGYIVKNG 198
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
WELN +I LV+MYAK G L+ A MV ELM+ER+V SWT +ICG+ G++++AL +FE
Sbjct: 199 WELNVEIGAALVNMYAKGGVLRNAAMVLELMDERDVTSWTLMICGAVRCGFNKEALVVFE 258
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
MQ GVKPNE+TFTGVL+AC H G V++GR+YFKMI EE L+PR+QHY C+V L GK+
Sbjct: 259 KMQMDGVKPNELTFTGVLSACAHGGFVEDGRRYFKMI-EECGLKPRVQHYACLVYLIGKS 317
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G LEEAYE+I+ M++EP+V++ GSFL+ACKEHKQF++AE VI+Q LRM KPEN G+++L
Sbjct: 318 GMLEEAYEIIKMMKVEPDVVVLGSFLSACKEHKQFEIAEGVIEQVLRMAKPENYRGLYSL 377
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARG 391
I DLY + +K E AER++KL++ +++R+A+G
Sbjct: 378 IADLYVIGDKSEEAERMKKLIIKEHLRQAKG 408
>gi|297738046|emb|CBI27247.3| unnamed protein product [Vitis vinifera]
Length = 268
Score = 354 bits (908), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 163/232 (70%), Positives = 194/232 (83%), Gaps = 1/232 (0%)
Query: 169 GKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAH 228
G S HGF KN WEL+ + T+LVDMYAKCGFLK A VF+LM+E+NV SWTALICGSA
Sbjct: 38 GGSIHGFTAKNGWELSVDLGTVLVDMYAKCGFLKSAFRVFDLMQEKNVASWTALICGSAQ 97
Query: 229 RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQ 288
GY ++ALS+FE+MQ GVKPNEMTFTG+L+AC GLV+EGRKYF I EEY LEPRIQ
Sbjct: 98 HGYGKEALSMFELMQDMGVKPNEMTFTGILSACAQAGLVEEGRKYFNKI-EEYGLEPRIQ 156
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348
H+GCMVDLFGKAG LEEAYE+I +M+LEPNV++W SFL++CK HKQF++AERV +Q LR
Sbjct: 157 HFGCMVDLFGKAGLLEEAYEIINSMKLEPNVVLWSSFLSSCKVHKQFELAERVTEQVLRT 216
Query: 349 VKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLSV 400
VKPENDGGV+TLI +L+ +N+KW+ AERVRKLM+NQ VRKARGSS I S SV
Sbjct: 217 VKPENDGGVYTLISNLFVLNDKWDDAERVRKLMVNQKVRKARGSSFIRSGSV 268
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 86 TMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLT 145
++ Y+K G + A F+ M +NVASW+A+I G L +F E++ + G+
Sbjct: 59 VLVDMYAKCGFLKSAFRVFDLMQEKNVASWTALICGSAQHGYGKEALSMF-ELMQDMGVK 117
Query: 146 PDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATI--LVDMYAKCGFLKY 203
P++MT +LS C+ G L+ + F E+ L +I +VD++ K G L+
Sbjct: 118 PNEMTFTGILSACAQAG----LVEEGRKYFNKIEEYGLEPRIQHFGCMVDLFGKAGLLEE 173
Query: 204 ALMVFELME-ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP 249
A + M+ E NV+ W++ + E A + E + T VKP
Sbjct: 174 AYEIINSMKLEPNVVLWSSFLSSCKVHKQFELAERVTEQVLRT-VKP 219
>gi|357125448|ref|XP_003564406.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Brachypodium distachyon]
Length = 440
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 179/406 (44%), Positives = 254/406 (62%), Gaps = 12/406 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSI-----LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVAT 55
+ L+S + + P+D S L LK + + L ++ H H+H+L+ +++ +VA+
Sbjct: 26 LHLYSLLRIRLRPTDPSSFAWRAALLALKPLSAASCLPLLSHFHAHLLRSNLLAYPHVAS 85
Query: 56 SLLHEYVVTSFGFARKLFDELPER--NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA 113
SLLH Y + S A +FD++P N V N M+ +S ++ AR FF+ +P ++V
Sbjct: 86 SLLHSYSLLSPSVAHHMFDQIPPATCNLVVVNVMLASVCRSSDLASARLFFDGIPDKDVV 145
Query: 114 SWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL--MGKS 171
SWS M+ Y + G GL FR M L D +++ VL+GC+ S GLL +S
Sbjct: 146 SWSTMLGCYFSHGRLADGLAFFRAMTFTTQLAADYVSLVTVLTGCA---SAGLLPPFCRS 202
Query: 172 AHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGY 231
HG+ V+ N + T L+D Y K G L YA VF + R+V+ WTA+ICG A
Sbjct: 203 VHGYAVRRCVPANRHLGTSLIDCYGKAGRLDYASRVFARVPSRSVMHWTAMICGMAMHLR 262
Query: 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG 291
S++A+ LFE M+ GV+PN+MTFT VL+AC H GLVD+GRK+FK++ E+YDLEP I HYG
Sbjct: 263 SDEAIRLFEKMRWQGVQPNKMTFTAVLSACGHAGLVDQGRKFFKLMFEKYDLEPTIHHYG 322
Query: 292 CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351
CMVD+F KAG LE+AY+VI+TMR+EPN+IIW S LAACK K FD+A +++ L M
Sbjct: 323 CMVDIFAKAGQLEDAYDVIKTMRVEPNIIIWTSLLAACKRFKNFDIAVEGLEKVLAMEIS 382
Query: 352 ENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
+ +GGV+TLI DLY M +W+ +VR+LM NVRK RGSS I +
Sbjct: 383 DENGGVYTLISDLYAMGGRWDDVMKVRRLMEEHNVRKKRGSSSIKA 428
>gi|115440507|ref|NP_001044533.1| Os01g0800400 [Oryza sativa Japonica Group]
gi|19570985|dbj|BAB86412.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|20804737|dbj|BAB92423.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113534064|dbj|BAF06447.1| Os01g0800400 [Oryza sativa Japonica Group]
gi|125572331|gb|EAZ13846.1| hypothetical protein OsJ_03770 [Oryza sativa Japonica Group]
gi|215693327|dbj|BAG88709.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 440
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 176/404 (43%), Positives = 246/404 (60%), Gaps = 12/404 (2%)
Query: 1 MQLFSQMHRQSVPSDSF-----SILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVAT 55
++L+S + + PSD + LK + +L ++ H H+H+++ +++ +VA+
Sbjct: 26 LRLYSLIRIHARPSDPALFAWRPAVLALKPLSAAASLPLLSHFHAHLIRSNLLAYPHVAS 85
Query: 56 SLLHEYVVTSFGFARKLFDELPER--NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA 113
SLL Y + S A LFD++P N V N M+ +S ++ AR FF+ +P ++V
Sbjct: 86 SLLRGYSLLSPEHAHHLFDQIPPSTCNLVVVNVMLGSLCRSSDLASARAFFDGIPDKDVV 145
Query: 114 SWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL--MGKS 171
SWS M+A Y + GL FR M L D + + VL+GC+ S GLL ++
Sbjct: 146 SWSTMLACYFSHSRVAEGLAFFRTMTFTTQLAADYVMLVTVLTGCA---SAGLLPVSCRA 202
Query: 172 AHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGY 231
HG+IV+ + T L+D YAK G L YA VF + RNV+ WTA+ICGSA
Sbjct: 203 IHGYIVRRGITFTMHLGTALIDCYAKAGRLDYASRVFCRVPLRNVMHWTAMICGSAAHLG 262
Query: 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG 291
SE A+ LFE M +GV+PNEMTFT VL+AC GLVD+GR++FK++ + Y EP I HYG
Sbjct: 263 SEKAIQLFEEMCRSGVQPNEMTFTAVLSACGQAGLVDQGRRFFKLMVDTYGFEPTIHHYG 322
Query: 292 CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351
C+VDL+ KAG LE+AYEVI+TMR+EPN+IIW S LAACK+ K F +A I++ L M
Sbjct: 323 CIVDLYAKAGKLEDAYEVIKTMRMEPNIIIWTSLLAACKKFKNFYIAVEGIEKVLSMEIS 382
Query: 352 ENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
E +GG++ LI DLY M +WE RVR LM +NV K RGSS I
Sbjct: 383 EENGGLYALISDLYAMGGQWEDVLRVRSLMEERNVWKIRGSSSI 426
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 160/396 (40%), Positives = 244/396 (61%), Gaps = 6/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF ++ + D ++ +LK+C+ ++ +H ++ KLG S++++ ++H
Sbjct: 98 ISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHL 157
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + G ARK+FD++P+R+ +TWN MI K G+ A F MP RNV SW++MI
Sbjct: 158 YALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMI 217
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y G + LF EM + GL P+++T+ AVL C+ +G+ L++G+ H F ++
Sbjct: 218 GGYAQCGKSKEAIDLFLEM-EDAGLLPNEVTVVAVLVACADMGN--LVLGRRIHDFSNRS 274
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+E N ++ L+DMY KCG L+ A +F+ MEER V+SW+A+I G A G +EDAL+LF
Sbjct: 275 GYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALF 334
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M TGVKPN +TF G+L AC H G+V++GRKYF + +Y + PRI+HYGCMVDLF +
Sbjct: 335 NKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSR 394
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG L+EA+E I M + PN ++WG+ L CK HK +AE + L + P ND G +
Sbjct: 395 AGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRH-LSKLDPLND-GYYV 452
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++ ++Y +WE RVRKLM ++ V+K G S I
Sbjct: 453 VLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSI 488
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 79/188 (42%), Gaps = 10/188 (5%)
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR 229
K H ++K L+ + + + A YA ++F+L++ V W + A
Sbjct: 32 KQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEG 91
Query: 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQH 289
DA+SLF ++ + P+ T + VL AC V G+ + E+ L+ +
Sbjct: 92 DSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYV-EKLGLQSNMFL 150
Query: 290 YGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA-------ACKEHKQF-DMAERV 341
+V L+ G + A +V M + +VI W +A A +K F +M ER
Sbjct: 151 QNMIVHLYALCGEIGVARKVFDKMP-QRDVITWNIMIARLVKMGDAEGAYKLFAEMPERN 209
Query: 342 IKQALRMV 349
++ M+
Sbjct: 210 VRSWTSMI 217
>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
Length = 616
Score = 323 bits (829), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 165/396 (41%), Positives = 245/396 (61%), Gaps = 7/396 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ +M S P ++++ +LK+C++ + +H+HI K G+ +Y SL++ Y
Sbjct: 97 LYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQIHAHITKFGYGHDIYAVNSLINSYA 156
Query: 63 VT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA-SWSAMIA 120
VT +F A LFD + E +AV+WN++IKGY K+G + A F +MP +N A SW+ MI+
Sbjct: 157 VTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPEKNNAISWTTMIS 216
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y+ AG L+LF EM N + PD +++ + LS CS LG+ L GK H + K
Sbjct: 217 GYVQAGMNKEALQLFHEM-QNSNVPPDNVSLASALSACSQLGA--LEQGKWIHSYANKTR 273
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
++ + +L+DMYAKCG ++ AL VF+ M+ ++V WTALI G A+ G +A+S F
Sbjct: 274 TRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHGLGREAISKFL 333
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
MQ GVKPN +TFT VLTAC +TGLV+EG+ F I+ +Y+L+P I+HYGCMVDL G+A
Sbjct: 334 EMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIEHYGCMVDLLGRA 393
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G L EA I+ M L+PN +IWGS L AC+ HK ++ E++ + + M N GG +
Sbjct: 394 GLLNEANRFIQKMPLKPNAVIWGSLLKACQIHKNIELGEKIGEILIEM--DSNHGGRYVH 451
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
+ +++ M +KW+ A R+LM Q V K G S IS
Sbjct: 452 MANIHAMGKKWDKAAETRRLMREQGVVKVPGCSAIS 487
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 80/350 (22%), Positives = 151/350 (43%), Gaps = 29/350 (8%)
Query: 16 SFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATS-LLHEYVVTSFGFARKL-F 73
SF+ H L + +H+ +LK G + Y T L + +A + F
Sbjct: 8 SFAFEHNLSCLQKCPTEVELKQIHARMLKSGLLQDPYAMTKFLSFCLSSSFSSYAHDVFF 67
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERM----PLRNVASWSAMIAAYLNAGAYD 129
+ + WN MI+G S S + + RM N ++ ++ A N A+
Sbjct: 68 NGFDRPDTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQ 127
Query: 130 PGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA- 188
++ I+ G D + ++++ + + G H ++ + + + ++
Sbjct: 128 ETTQIHAH-ITKFGYGHDIYAVNSLINSYA-------VTGNFKHAHLLFDRIQEPDAVSW 179
Query: 189 TILVDMYAKCGFLKYALMVFELMEER-NVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
++ Y K G + AL +F M E+ N ISWT +I G G +++AL LF MQ + V
Sbjct: 180 NSVIKGYVKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNV 239
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC--MVDLFGKAGFLEE 305
P+ ++ L+AC G +++G+ ++ RI C ++D++ K G +EE
Sbjct: 240 PPDNVSLASALSACSQLGALEQGKWIHSYANKT---RTRIDSVLCCVLIDMYAKCGEMEE 296
Query: 306 AYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM----VKP 351
A V + M+ + +V +W + ++ H + I + L M VKP
Sbjct: 297 ALGVFKNMKTK-SVQVWTALISGYAYH---GLGREAISKFLEMQNMGVKP 342
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 96/226 (42%), Gaps = 37/226 (16%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+QLF +M +VP D+ S+ L +C+ L +HS+ K
Sbjct: 228 LQLFHEMQNSNVPPDNVSLASALSACSQLGALEQGKWIHSYANK---------------- 271
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
R D +V +I Y+K G + EA F+ M ++V W+A+I+
Sbjct: 272 --------TRTRID------SVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALIS 317
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y G + F EM N G+ P+ +T AVL+ CS+ G V GKS I + +
Sbjct: 318 GYAYHGLGREAISKFLEM-QNMGVKPNAITFTAVLTACSYTGLVE--EGKSVFNTI-ERD 373
Query: 181 WELNEQIA--TILVDMYAKCGFLKYALMVFELME-ERNVISWTALI 223
+ L I +VD+ + G L A + M + N + W +L+
Sbjct: 374 YNLKPTIEHYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLL 419
>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 519
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 173/430 (40%), Positives = 259/430 (60%), Gaps = 38/430 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+++MHR V DS++ +LK+CT + +H +L+LGF S+ V +LL
Sbjct: 93 ISLYTEMHRHFVKGDSYTFPFVLKACTRLFWVNTGSAVHGMVLRLGFGSNAVVRNTLLVF 152
Query: 61 Y-------VVTSF-----------------GFAR--------KLFDELPERNAVTWNTMI 88
+ V TS G+AR KLF+E+PER+ V+WN MI
Sbjct: 153 HAKCGDLNVATSLFDDSCKGDVVAWSSLIAGYARRGDLKVARKLFNEMPERDLVSWNVMI 212
Query: 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ 148
GY K G + AR F+ P+++V SW+AMIA Y+ G L+LF EM G+ PD+
Sbjct: 213 TGYVKQGEMESARMLFDEAPVKDVVSWNAMIAGYVVCGLSKQALELFNEM-CRAGVFPDE 271
Query: 149 MTIGAVLSGCSHLGSVGLLMGKSAHGFIVK-NEWELNEQIATILVDMYAKCGFLKYALMV 207
+T+ ++LS C+ LG L GK H +++ + +L+ + L+DMYAKCG +K +L V
Sbjct: 272 VTLLSLLSACADLGD--LENGKKVHAKVMEISMGKLSTLLGNALIDMYAKCGNIKESLDV 329
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
F + +++VISW ++I G A G+ +++LSLF+MMQ T + PNE+TF GVL AC H G +
Sbjct: 330 FWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQRTKICPNEITFVGVLVACSHAGEI 389
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
DEG KYF ++ EY +EP I+H GCMVD+ G+AG L+EA + I +M++EPN IIW + LA
Sbjct: 390 DEGYKYFDLMSSEYKIEPNIRHCGCMVDMLGRAGLLKEAAKFIDSMKIEPNAIIWRTLLA 449
Query: 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVR 387
ACK H ++A+ ++ M K + G + L+ +LY +W+GAE+VRKLM + V
Sbjct: 450 ACKVHGDVELAKVANEKLFSMRK--DHSGDYVLMSNLYASRGEWDGAEKVRKLMDDSGVT 507
Query: 388 KARGSSVISS 397
K RGSS + +
Sbjct: 508 KIRGSSFVEA 517
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/350 (22%), Positives = 150/350 (42%), Gaps = 60/350 (17%)
Query: 31 NLTVIHHLHSHILKLGFISHV--------YVATSLLHEYVV-TSFGFARKLFDELPERNA 81
NL + +H+ ++ GF ++V ++TSL+ T +A +LF ++P+ +
Sbjct: 14 NLKTLKQIHALMIINGFNNNVNFLGDLVLTISTSLVGPTATPTVTNYAHQLFAQIPQPDT 73
Query: 82 VTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY------DPGLKLF 135
+N MI+G S+S N PLR ++ ++ M ++ +Y +LF
Sbjct: 74 FMYNVMIRGSSQSPN-----------PLRAISLYTEMHRHFVKGDSYTFPFVLKACTRLF 122
Query: 136 --------REMISNEGLTPDQMTIGAVL---SGCSHLGSVGLLMGKSAHGFIVK------ 178
M+ G + + +L + C L L S G +V
Sbjct: 123 WVNTGSAVHGMVLRLGFGSNAVVRNTLLVFHAKCGDLNVATSLFDDSCKGDVVAWSSLIA 182
Query: 179 ---------------NEWELNEQIA-TILVDMYAKCGFLKYALMVFELMEERNVISWTAL 222
NE + ++ +++ Y K G ++ A M+F+ ++V+SW A+
Sbjct: 183 GYARRGDLKVARKLFNEMPERDLVSWNVMITGYVKQGEMESARMLFDEAPVKDVVSWNAM 242
Query: 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD 282
I G G S+ AL LF M GV P+E+T +L+AC G ++ G+K + E
Sbjct: 243 IAGYVVCGLSKQALELFNEMCRAGVFPDEVTLLSLLSACADLGDLENGKKVHAKVMEISM 302
Query: 283 LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
+ ++D++ K G ++E+ +V ++ + +VI W S + H
Sbjct: 303 GKLSTLLGNALIDMYAKCGNIKESLDVFWSIT-DKDVISWNSVIVGMALH 351
>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 317 bits (813), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 155/385 (40%), Positives = 238/385 (61%), Gaps = 6/385 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF ++ + D ++ +LK+C+ ++ +H ++ KLG S++++ ++H
Sbjct: 98 ISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHL 157
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + G ARK+FD++P+R+ +TWN MI K G+ A F MP RNV SW++MI
Sbjct: 158 YALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMI 217
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y G + LF EM + GL P+++T+ AVL C+ +G+ L++G+ H F ++
Sbjct: 218 GGYAQCGKSKEAIDLFLEM-EDAGLLPNEVTVVAVLVACADMGN--LVLGRRIHDFSNRS 274
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+E N ++ L+DMY KCG L+ A +F+ MEER V+SW+A+I G A G +EDAL+LF
Sbjct: 275 GYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALF 334
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M TGVKPN +TF G+L AC H G+V++GRKYF + +Y + PRI+HYGCMVDLF +
Sbjct: 335 NKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSR 394
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG L+EA+E I M + PN ++WG+ L CK HK +AE + L + P ND G +
Sbjct: 395 AGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNVKLAEEATRH-LSKLDPLND-GYYV 452
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQ 384
++ ++Y +WE RVRKLM ++
Sbjct: 453 VLSNIYAEAGRWEDVARVRKLMRDR 477
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 109/270 (40%), Gaps = 46/270 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF +M + + +++ +L +C NL + +H + G+ ++ V +L+
Sbjct: 230 IDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDM 289
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERM------PLRNVA 113
YV A ++FD + ER V+W+ MI G + G +A F +M P N
Sbjct: 290 YVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKP--NAV 347
Query: 114 SWSAMIAAYLNAGAYDPGLKLF--------------------------------REMISN 141
++ ++ A + G + G K F E I N
Sbjct: 348 TFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMN 407
Query: 142 EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFL 201
+ P+ + GA+L GC +V L + H + LN+ +L ++YA+ G
Sbjct: 408 MPIAPNGVVWGALLGGCKVHKNVKLAEEATRH---LSKLDPLNDGYYVVLSNIYAEAGRW 464
Query: 202 KYALMVFELMEERNVISWTALICGSAHRGY 231
+ V +LM +R +W L+ +GY
Sbjct: 465 EDVARVRKLMRDRG--TWEKLLQRMKLKGY 492
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 2/158 (1%)
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR 229
K H ++K L+ + + + A YA ++F+L++ V W + A
Sbjct: 32 KQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEG 91
Query: 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQH 289
DA+SLF ++ + P+ T + VL AC V G+ + E+ L+ +
Sbjct: 92 DSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYV-EKLGLQSNMFL 150
Query: 290 YGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
+V L+ G + A +V M + +VI W +A
Sbjct: 151 QNMIVHLYALCGEIGVARKVFDKMP-QRDVITWNIMIA 187
>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 317 bits (813), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 160/387 (41%), Positives = 247/387 (63%), Gaps = 6/387 (1%)
Query: 11 SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFA 69
V D+F+ +LK+C +++ +H KLGF S++++ +L+ Y + G A
Sbjct: 5 DVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDA 64
Query: 70 RKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYD 129
LF+++P+R+AVTWN +I +K G++ A FF RMP +NV SW++MI+ ++ G +
Sbjct: 65 MLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPN 124
Query: 130 PGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIAT 189
+ LF ++ +E + P+++T+ +VL+ C+ LG + L G+ H + K+ ++ N +
Sbjct: 125 EAIDLFMKL-EDEAVRPNEVTVVSVLAACADLGDLDL--GRIVHEYSTKSGFKRNVHVCN 181
Query: 190 ILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP 249
L+DMY KCG L+ A VF MEER V+SW+A+I G A G +E+AL LF M GVKP
Sbjct: 182 TLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKP 241
Query: 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEV 309
N +TF G+L AC H GL+DEGR++F + +Y + P+I+HYGC+VDLF +AG LEEA+E
Sbjct: 242 NGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEF 301
Query: 310 IRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNE 369
I +M ++PN ++WG+ L CK HK D+AE IK L + P ND G + +I ++Y E
Sbjct: 302 ILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKH-LSELDPLND-GYYVVISNIYAEAE 359
Query: 370 KWEGAERVRKLMLNQNVRKARGSSVIS 396
+WE A RVRKLM ++ V+K G S I+
Sbjct: 360 RWEDAARVRKLMKDRGVKKTSGWSSIT 386
>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 620
Score = 317 bits (812), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 158/395 (40%), Positives = 247/395 (62%), Gaps = 6/395 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ +M S P ++++ +LK+C++ + +H+ I KLG+ + VY SL++ Y
Sbjct: 102 LYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYA 161
Query: 63 VT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
VT +F A LFD +PE + V+WN++IKGY K+G + A F +M +N SW+ MI+
Sbjct: 162 VTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISG 221
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ A L+LF EM N + PD +++ LS C+ LG+ L GK H ++ K
Sbjct: 222 YVQADMNKEALQLFHEM-QNSDVEPDNVSLANALSACAQLGA--LEQGKWIHSYLNKTRI 278
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
++ + +L+DMYAKCG ++ AL VF+ +++++V +WTALI G A+ G+ +A+S F
Sbjct: 279 RMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFME 338
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
MQ G+KPN +TFT VLTAC +TGLV+EG+ F ++ +Y+L+P I+HYGC+VDL G+AG
Sbjct: 339 MQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAG 398
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L+EA I+ M L+PN +IWG+ L AC+ HK ++ E I + L + P + GG +
Sbjct: 399 LLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEE-IGEILIAIDPYH-GGRYVHK 456
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
+++ M++KW+ A R+LM Q V K G S IS
Sbjct: 457 ANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTIS 491
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/342 (24%), Positives = 161/342 (47%), Gaps = 37/342 (10%)
Query: 11 SVPSDSFSILH-------ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV 63
+V S SFS+ H L+ C+ L IH + +LK G + Y T L + +
Sbjct: 2 NVISCSFSLEHNLYETMSCLQRCSKQEELKQIH---ARMLKTGLMQDSYAITKFL-SFCI 57
Query: 64 TS-----FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERM----PLRNVAS 114
+S +A+ +FD + WN MI+G+S S + ++RM N +
Sbjct: 58 SSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYT 117
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
+ +++ A N A++ ++ + I+ G D + ++++ + G+ L AH
Sbjct: 118 FPSLLKACSNLSAFEETTQIHAQ-ITKLGYENDVYAVNSLINSYAVTGNFKL-----AH- 170
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
+ E ++ ++ Y K G + AL +F M E+N ISWT +I G +++
Sbjct: 171 LLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKE 230
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQH---YG 291
AL LF MQ + V+P+ ++ L+AC G +++G+ ++ + RI+ G
Sbjct: 231 ALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLN-----KTRIRMDSVLG 285
Query: 292 C-MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
C ++D++ K G +EEA EV + ++ + +V W + ++ H
Sbjct: 286 CVLIDMYAKCGEMEEALEVFKNIK-KKSVQAWTALISGYAYH 326
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 97/228 (42%), Gaps = 41/228 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+QLF +M V D+ S+ + L +C L +HS++ K
Sbjct: 232 LQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRI------------- 278
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
++V +I Y+K G + EA + F+ + ++V +W+A+I+
Sbjct: 279 -----------------RMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALIS 321
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV--GLLMGKSAHGFIVK 178
Y G + F EM G+ P+ +T AVL+ CS+ G V G L+ S ++
Sbjct: 322 GYAYHGHGREAISKFMEM-QKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYS-----ME 375
Query: 179 NEWELNEQIA--TILVDMYAKCGFLKYA-LMVFELMEERNVISWTALI 223
++ L I +VD+ + G L A + E+ + N + W AL+
Sbjct: 376 RDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALL 423
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 317 bits (812), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 158/395 (40%), Positives = 247/395 (62%), Gaps = 6/395 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ +M S P ++++ +LK+C++ + L +H+ I KLG+ + VY SL++ Y
Sbjct: 131 LYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYENDVYAVNSLINSYA 190
Query: 63 VT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
T +F A LFD +P+ +AV+WN++IKGY+K+G + A F +M +N SW+ MI+
Sbjct: 191 ATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISG 250
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ AG + L+LF EM N + PD +++ LS C+ LG+ L GK H ++ K
Sbjct: 251 YVQAGMHKEALQLFHEM-QNSDVEPDNVSLANALSACAQLGA--LEQGKWIHSYLTKTRI 307
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
++ + +L+DMYAKCG + AL VF+ ++ ++V +WTALI G A+ G+ +A+S F
Sbjct: 308 RMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFME 367
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
MQ G+KPN +TFT VLTAC +TGLV+EG+ F ++ +Y+L+P I+HYGC+VDL +AG
Sbjct: 368 MQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAG 427
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L+EA I+ M L+PN +IWG+ L AC+ HK ++ E I + L + P + GG +
Sbjct: 428 LLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEE-IGEILIAIDPYH-GGRYVHK 485
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
+++ M +KW+ A R+LM Q V K G S IS
Sbjct: 486 ANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTIS 520
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 76/310 (24%), Positives = 145/310 (46%), Gaps = 25/310 (8%)
Query: 35 IHHLHSHILKLGFISHVYVATSLLHEYVVTS----FGFARKLFDELPERNAVTWNTMIKG 90
+ +H+ +LK G I Y T L + ++ +A+ +FD + WN MI+G
Sbjct: 59 LKQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRG 118
Query: 91 YSKSGNVCEARDFFERM----PLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
+S S + ++RM N ++ +++ A N A + ++ + I+ G
Sbjct: 119 FSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQ-ITKLGYEN 177
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
D + ++++ + G+ L AH + + + ++ YAK G + AL
Sbjct: 178 DVYAVNSLINSYAATGNFKL-----AH-LLFDRIPKPDAVSWNSVIKGYAKAGKMDIALT 231
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
+F M E+N ISWT +I G G ++AL LF MQ + V+P+ ++ L+AC G
Sbjct: 232 LFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGA 291
Query: 267 VDEGRKYFKMIDEEYDLEPRIQH---YGC-MVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
+++G+ Y + RI+ GC ++D++ K G + EA EV + ++ + +V W
Sbjct: 292 LEQGKWI-----HSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRK-SVQAW 345
Query: 323 GSFLAACKEH 332
+ ++ H
Sbjct: 346 TALISGYAYH 355
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 98/228 (42%), Gaps = 41/228 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+QLF +M V D+ S+ + L +C L +HS++ K
Sbjct: 261 LQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRI------------- 307
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
++V +I Y+K G++ EA + F+ + ++V +W+A+I+
Sbjct: 308 -----------------RMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALIS 350
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV--GLLMGKSAHGFIVK 178
Y G + F EM G+ P+ +T VL+ CS+ G V G L+ + ++
Sbjct: 351 GYAYHGHGREAISKFMEM-QKMGIKPNVITFTTVLTACSYTGLVEEGKLI-----FYNME 404
Query: 179 NEWELNEQIA--TILVDMYAKCGFLKYA-LMVFELMEERNVISWTALI 223
++ L I +VD+ ++ G L A + E+ + N + W AL+
Sbjct: 405 RDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALL 452
>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 518
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 160/395 (40%), Positives = 241/395 (61%), Gaps = 6/395 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ QM S+P ++++ +LK+C+ + L H +H I+K GF S VY SLL Y
Sbjct: 98 LYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQIHVQIIKRGFGSEVYATNSLLRVYA 157
Query: 63 VT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
++ S A LFD LP R+ V+WNTMI GY K GNV A F+ MP +NV SW++MI
Sbjct: 158 ISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNVISWTSMIVG 217
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
++ G + L L ++M+ G+ PD++T+ LS C+ LG+ L GK H +I KN+
Sbjct: 218 FVRTGMHKEALCLLQQMLV-AGIKPDKITLSCSLSACAGLGA--LEQGKWIHTYIGKNKI 274
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+++ + L+DMY KCG +K AL+VF +E++ V +WTA+I G A G +AL F
Sbjct: 275 KIDPVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKGSEALDWFTQ 334
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
MQ G+KP TFT VLTAC HTGLV+EG+ F+ + Y+++P ++HYGCMVDL G+AG
Sbjct: 335 MQKAGIKPTSFTFTAVLTACSHTGLVEEGKSLFESMSTFYNMKPVMEHYGCMVDLLGRAG 394
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
FL+EA E + +M ++PN IWGS L AC HK ++ + + K + + PE+DG + +
Sbjct: 395 FLKEAKEFVESMPIKPNAAIWGSLLNACHLHKHLELGKEIGKFLIEL-DPEHDGR-YIHL 452
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
++ +W+ A +VR + N+ + G S I+
Sbjct: 453 ASIHAAAGEWDEASQVRSHIKNKGLLNLPGCSTIT 487
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 147/347 (42%), Gaps = 73/347 (21%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPER 79
+ +L+ C+ N+ + +H +LK G I H + LL Y F
Sbjct: 15 MSLLERCS---NIGELKQIHGQLLKKGTIRHKLTVSRLLTTYASMEFS------------ 59
Query: 80 NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI 139
N+ AR F+R+ N W+ MI AY N+ + L L+ +M+
Sbjct: 60 ----------------NLTYARMVFDRISSPNTVMWNTMIRAYSNSNDPEEALLLYHQML 103
Query: 140 SNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIAT---------- 189
+ + + T +L CS L + L H I+K + +E AT
Sbjct: 104 -HHSIPHNAYTFPFLLKACSALSA--LAETHQIHVQIIKRGFG-SEVYATNSLLRVYAIS 159
Query: 190 ----------------------ILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSA 227
++D Y KCG ++ A +F+ M E+NVISWT++I G
Sbjct: 160 GSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNVISWTSMIVGFV 219
Query: 228 HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE-EYDLEPR 286
G ++AL L + M G+KP+++T + L+AC G +++G+ I + + ++P
Sbjct: 220 RTGMHKEALCLLQQMLVAGIKPDKITLSCSLSACAGLGALEQGKWIHTYIGKNKIKIDPV 279
Query: 287 IQHYGC-MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
+ GC ++D++ K G +++A V + + V W + + H
Sbjct: 280 L---GCALIDMYVKCGEMKKALLVFSKLE-KKCVYTWTAIIGGFAVH 322
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 102/245 (41%), Gaps = 43/245 (17%)
Query: 153 AVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGF--LKYALMVFEL 210
++L CS++G + K HG ++K ++ + L+ YA F L YA MVF+
Sbjct: 16 SLLERCSNIGEL-----KQIHGQLLKKGTIRHKLTVSRLLTTYASMEFSNLTYARMVFDR 70
Query: 211 MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC--------- 261
+ N + W +I ++ E+AL L+ M + N TF +L AC
Sbjct: 71 ISSPNTVMWNTMIRAYSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAET 130
Query: 262 --VHTGLVDEG------------RKY-----FKMIDEEYDLEPR--IQHYGCMVDLFGKA 300
+H ++ G R Y K +DL P I + M+D + K
Sbjct: 131 HQIHVQIIKRGFGSEVYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKC 190
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-VKPENDGGVFT 359
G +E AY++ + M E NVI W S + A +++Q L +KP+ T
Sbjct: 191 GNVEMAYKIFQAMP-EKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDK----IT 245
Query: 360 LICDL 364
L C L
Sbjct: 246 LSCSL 250
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 161/397 (40%), Positives = 246/397 (61%), Gaps = 6/397 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF ++ + V D+F+ +L++C + +L+ LH + K+GF S++Y+ ++H
Sbjct: 113 IMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHL 172
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y G AR LF+++P+R+ VTWN MI K G+ A D F RMP RNV SW++MI
Sbjct: 173 YASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMI 232
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A Y+ G + LF +M G+ +++T+ AVL+ C+ LG++ L G H + ++
Sbjct: 233 AGYVQCGKAKEAIHLFAKM-EEAGVKCNEVTVVAVLAACADLGALDL--GMRIHEYSNRH 289
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
++ N +I+ L+DMY KCG L+ A VFE MEER V+SW+A+I G A G +E+AL LF
Sbjct: 290 GFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLF 349
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M G++PN +TF G+L AC H GL+ EGR++F + +Y + P+I+HYGCMVDL +
Sbjct: 350 SDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSR 409
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG L EA+E I M ++PN ++WG+ L AC+ HK +MAE IK L + P ND G +
Sbjct: 410 AGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLEL-DPLND-GYYV 467
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
++ ++Y +WE RVRK M ++ V+K G S I+
Sbjct: 468 VLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSIT 504
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 314 bits (805), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 161/397 (40%), Positives = 246/397 (61%), Gaps = 6/397 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF ++ + V D+F+ +L++C + +L+ LH + K+GF S++Y+ ++H
Sbjct: 113 IMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHL 172
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y G AR LF+++P+R+ VTWN MI K G+ A D F RMP RNV SW++MI
Sbjct: 173 YASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMI 232
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A Y+ G + LF +M G+ +++T+ AVL+ C+ LG++ L G H + ++
Sbjct: 233 AGYVQCGKAKEAIHLFAKM-EEAGVKCNEVTVVAVLAACADLGALDL--GMRIHEYSNRH 289
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
++ N +I+ L+DMY KCG L+ A VFE MEER V+SW+A+I G A G +E+AL LF
Sbjct: 290 GFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLF 349
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M G++PN +TF G+L AC H GL+ EGR++F + +Y + P+I+HYGCMVDL +
Sbjct: 350 SDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSR 409
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG L EA+E I M ++PN ++WG+ L AC+ HK +MAE IK L + P ND G +
Sbjct: 410 AGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLEL-DPLND-GYYV 467
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
++ ++Y +WE RVRK M ++ V+K G S I+
Sbjct: 468 VLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSIT 504
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 314 bits (805), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 150/396 (37%), Positives = 243/396 (61%), Gaps = 6/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
M+LF +M R V S +++ +L +C+ +L V +H ++ L + +L+
Sbjct: 205 MKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDM 264
Query: 61 YVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A +FD + R+ ++W ++ G++ G V AR++F++MP R+ SW+AMI
Sbjct: 265 YAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMI 324
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
YL + L LFREM + + PD+ T+ ++L+ C+HLG+ L +G+ +I KN
Sbjct: 325 DGYLQVNRFKEVLSLFREMQA-ANIKPDEFTMVSILTACAHLGA--LELGEWIKAYIDKN 381
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
E +++ + L+DMY CG ++ A+ +F M R+ ISWTA+I G A GY E+AL +F
Sbjct: 382 EIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMF 441
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M + P+E+T GVL AC H+G+VD+G+K+F + ++ +EP + HYGCMVDL G+
Sbjct: 442 SQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGR 501
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG L+EA+EVI+ M ++PN I+WGS L AC+ H+ +MAE +Q L + +PEN G V+
Sbjct: 502 AGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILEL-EPEN-GAVYV 559
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+C++Y +WE VRKLM+++ ++K G S+I
Sbjct: 560 LLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLI 595
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 104/384 (27%), Positives = 174/384 (45%), Gaps = 76/384 (19%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ ++ +M + V D ++ +LK T + LH HI+KLGF S+V+V +L+H
Sbjct: 104 VSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHL 163
Query: 61 YVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y ++ AR +FD + + VTWN MI GY++S
Sbjct: 164 YSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQ----------------------- 200
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+D +KLF EM + P +T+ +VLS CS L + + GK H ++
Sbjct: 201 --------FDESMKLFDEM-ERMRVLPSSITLVSVLSACSKLKDLNV--GKRVHRYVKDL 249
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS------- 232
+ E + L+DMYA CG + AL +F+ M+ R+VISWTA++ G + G
Sbjct: 250 KIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYF 309
Query: 233 ------------------------EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
++ LSLF MQA +KP+E T +LTAC H G ++
Sbjct: 310 DKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALE 369
Query: 269 EGRKYFKMIDEEYDLEPRIQHY--GCMVDLFGKAGFLEEAYEVIRTM----RLEPNVIIW 322
G ID+ E +I + ++D++ G +E+A + M ++ +I+
Sbjct: 370 LGEWIKAYIDKN---EIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIF 426
Query: 323 GSFLAACKEHKQFDMAERVIKQAL 346
G + E + DM +++K ++
Sbjct: 427 GLAINGYGE-EALDMFSQMLKASI 449
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/383 (21%), Positives = 163/383 (42%), Gaps = 49/383 (12%)
Query: 8 HRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH---EYVVT 64
H S+P L ++K+C ++ + +HS + G IS+ V ++ ++ +
Sbjct: 13 HLPSLPQTP--PLSLIKTC---KSMAQLKQIHSQTICTGLISNPIVPAQIIAFCCKHELG 67
Query: 65 SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLN 124
+AR +FD +P N WN MIKGYS+
Sbjct: 68 DMEYARMVFDTMPGPNHFVWNNMIKGYSR------------------------------- 96
Query: 125 AGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN 184
G + + ++ EM+ G+ PD+ T +L + +V G+ H IVK + N
Sbjct: 97 VGCPNSAVSMYCEMLE-RGVMPDEYTYPFLLKRFTRDTAVKC--GRELHDHIVKLGFSSN 153
Query: 185 EQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQA 244
+ L+ +Y+ G + A VF+ + +V++W +I G ++++ LF+ M+
Sbjct: 154 VFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMER 213
Query: 245 TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLE 304
V P+ +T VL+AC ++ G++ + + ++ +EP ++D++ G ++
Sbjct: 214 MRVLPSSITLVSVLSACSKLKDLNVGKRVHRYV-KDLKIEPVRVLENALIDMYAACGDMD 272
Query: 305 EAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDL 364
A + M+ +VI W + + Q +A + PE D +T + D
Sbjct: 273 TALGIFDNMKSR-DVISWTAIVTGFTNLGQVGLARNYFDKM-----PERDFVSWTAMIDG 326
Query: 365 YTMNEKWEGAERVRKLMLNQNVR 387
Y +++ + + M N++
Sbjct: 327 YLQVNRFKEVLSLFREMQAANIK 349
>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 640
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 167/429 (38%), Positives = 257/429 (59%), Gaps = 40/429 (9%)
Query: 1 MQLFSQM-HRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSL-- 57
M LF QM H++ +P DS+S+ ++++C + LH+ +LK+G S ++V T+L
Sbjct: 89 MSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLKIGLGSDLFVETALIE 148
Query: 58 -----------------------------LHEYV-VTSFGFARKLFDELPERNAVTWNTM 87
L EYV V A LFD +PER+ V+WNTM
Sbjct: 149 MYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPERDLVSWNTM 208
Query: 88 IKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM-ISNEGLTP 146
I G++ G+V A+ F+R R++ SWS+MIAAY A + L+LF EM ++N + P
Sbjct: 209 IHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQLAN--VLP 266
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
D++T+ +VLS C +G++G MGK H I +N E++ ++ T LVDMYAKCG + +L
Sbjct: 267 DKVTMVSVLSACGDVGALG--MGKMIHECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLR 324
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
VF M R+V +W+A+I G A+ G+ E AL F M + +KPN++TF GVL+AC H GL
Sbjct: 325 VFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGL 384
Query: 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
VDEG YF + + YD+ P+I+HYGC+VD+ G+AG L+EA E+I++M P+ I+W + L
Sbjct: 385 VDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIVWRALL 444
Query: 327 AACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386
AC+ +K ++AE L + +P DG + L+ ++Y+ ++W+ VR++M N N+
Sbjct: 445 GACRIYKNVEIAEEATVNLLEL-EPHVDGN-YVLLSNIYSQAKEWDKVVNVRRMMKNINI 502
Query: 387 RKARGSSVI 395
+K GSS I
Sbjct: 503 QKVPGSSSI 511
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 92/418 (22%), Positives = 160/418 (38%), Gaps = 99/418 (23%)
Query: 19 ILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPE 78
++ +L++ T N + IH L I+K + +V LL R+LF
Sbjct: 6 VMSLLQNATKLNQIIQIHAL---IIKTSLDGNNFVLAKLL-----------RRLF----- 46
Query: 79 RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM 138
S + ++ AR F+ +P + W+ MI AYLN+ + LF +M
Sbjct: 47 -----------ACSSANDLLYARSVFDEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQM 95
Query: 139 ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198
E + D ++ V+ C L G G+ H ++K + + T L++MYAK
Sbjct: 96 RHQECIPIDSYSLSLVIQACGRLKDPG--NGQKLHTQVLKIGLGSDLFVETALIEMYAKF 153
Query: 199 GFLKYALMV-------------------------------FELMEERNVISWTALICGSA 227
G ++ A + F+ M ER+++SW +I G A
Sbjct: 154 GDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPERDLVSWNTMIHGHA 213
Query: 228 HRG-------------------------------YSEDALSLFEMMQATGVKPNEMTFTG 256
G S +AL LF MQ V P+++T
Sbjct: 214 SLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVS 273
Query: 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE 316
VL+AC G + G+ + I E +E ++ +VD++ K G ++ + V M
Sbjct: 274 VLSACGDVGALGMGKMIHECI-ERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMN-N 331
Query: 317 PNVIIWGSFLAACKEHKQFDMA-ERVIKQALRMVKPENDG--GVFTLICDLYTMNEKW 371
+V W + + H ++A + K +KP + GV + + ++E W
Sbjct: 332 RDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGW 389
>gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Vitis vinifera]
Length = 573
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 170/404 (42%), Positives = 240/404 (59%), Gaps = 15/404 (3%)
Query: 3 LFSQMHRQSVP-SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
L+ M R+ P + F H+LKSCT +H +L+ GF + V T+LL Y
Sbjct: 141 LYRNMVRRRRPWPNHFIYPHVLKSCTQVVGPGSARMVHCQVLRSGFEQYPVVQTALLDAY 200
Query: 62 VV--TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
+ + AR LFDE+ ERN V+W MI GY++ G + A FE MP R+V SW+A+I
Sbjct: 201 LRFWSDVESARLLFDEMTERNVVSWTAMISGYTRLGQIGNAVLLFEEMPERDVPSWNALI 260
Query: 120 AAYLNAGAYDPGLKLFREMISNE------GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH 173
A Y G + L LFR MI+ E G P+Q+T LS C H G L +GK H
Sbjct: 261 AGYTQNGLFMEALSLFRRMIAVEAGAWGQGNRPNQVTAVCSLSACGHTGM--LRLGKWIH 318
Query: 174 GFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE 233
G++ +N L+ ++ LVDMY KCG LK A VF+ ER++ SW ++I A G S+
Sbjct: 319 GYVYRNGLGLDSFVSNALVDMYGKCGCLKEARRVFDRTLERSLTSWNSMINCLALHGQSQ 378
Query: 234 DALSLFEMMQ--ATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG 291
+A+S+FE M +GVKP+E+TF G+L AC H GLV++G YF+++ + Y +EP+I+HYG
Sbjct: 379 NAISVFEEMMTCGSGVKPDEVTFIGLLNACTHGGLVEKGWLYFELMTQNYGIEPQIEHYG 438
Query: 292 CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351
C+VDL G+AG EEA EV+R MR+EP+ +IWGS L CK H D+AE IK+ + M
Sbjct: 439 CLVDLLGRAGQFEEAMEVVRGMRIEPDEVIWGSLLNGCKIHGHTDLAEFSIKKLIDM--D 496
Query: 352 ENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
N+GG ++ ++Y KW+ +VRK++ QN K G S I
Sbjct: 497 PNNGGYGIMLANIYGELGKWDEVRKVRKVLKEQNAHKTPGCSWI 540
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 96/381 (25%), Positives = 156/381 (40%), Gaps = 86/381 (22%)
Query: 18 SILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH--EYVVTSFGFARKLFDE 75
S+L +L+ C H N+L L + ++ LG + A LL +++ +AR +FD
Sbjct: 57 SVLALLERCIHLNHLK---QLQAFLITLGHAQTHFYAFKLLRFCTLALSNLSYARFIFDH 113
Query: 76 LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF 135
+ N V ++AMI AY + + L L+
Sbjct: 114 VESPN-------------------------------VYLYTAMITAYASHSDHTSALLLY 142
Query: 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDM- 194
R M+ P+ VL C+ + VG + H ++++ +E + T L+D
Sbjct: 143 RNMVRRRRPWPNHFIYPHVLKSCTQV--VGPGSARMVHCQVLRSGFEQYPVVQTALLDAY 200
Query: 195 -------------------------------YAKCGFLKYALMVFELMEERNVISWTALI 223
Y + G + A+++FE M ER+V SW ALI
Sbjct: 201 LRFWSDVESARLLFDEMTERNVVSWTAMISGYTRLGQIGNAVLLFEEMPERDVPSWNALI 260
Query: 224 CGSAHRGYSEDALSLFEMMQAT-------GVKPNEMTFTGVLTACVHTGLVDEGRKYFKM 276
G G +ALSLF M A G +PN++T L+AC HTG++ G+
Sbjct: 261 AGYTQNGLFMEALSLFRRMIAVEAGAWGQGNRPNQVTAVCSLSACGHTGMLRLGKWIHGY 320
Query: 277 IDEE-YDLEPRIQHYGCMVDLFGKAGFLEEAYEVI-RTMRLEPNVIIWGSFLAACKEHKQ 334
+ L+ + + +VD++GK G L+EA V RT LE ++ W S + H Q
Sbjct: 321 VYRNGLGLDSFVSN--ALVDMYGKCGCLKEARRVFDRT--LERSLTSWNSMINCLALHGQ 376
Query: 335 FDMAERVIKQALRM---VKPE 352
A V ++ + VKP+
Sbjct: 377 SQNAISVFEEMMTCGSGVKPD 397
>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 518
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 166/430 (38%), Positives = 255/430 (59%), Gaps = 38/430 (8%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL---- 58
L++QM ++SV D+F+ +LK+CT + +H +L+LGF S+V V +LL
Sbjct: 94 LYAQMDQRSVKPDNFTFPFVLKACTKLFWVNTGSAVHGRVLRLGFGSNVVVRNTLLVFHA 153
Query: 59 -----------------HEYVVTS-----------FGFARKLFDELPERNAVTWNTMIKG 90
+ V S ARKLFDE+P+R+ V+WN MI
Sbjct: 154 KCGDLKVATDIFDDSDKGDVVAWSALIAGYAQRGDLSVARKLFDEMPKRDLVSWNVMITV 213
Query: 91 YSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMT 150
Y+K G + AR F+ P++++ SW+A+I Y+ L+LF EM G PD++T
Sbjct: 214 YTKHGEMESARRLFDEAPMKDIVSWNALIGGYVLRNLNREALELFDEMCG-VGECPDEVT 272
Query: 151 IGAVLSGCSHLGSVGLLMGKSAHGFIVK-NEWELNEQIATILVDMYAKCGFLKYALMVFE 209
+ ++LS C+ LG L G+ H I++ N+ +L+ + LVDMYAKCG + A+ VF
Sbjct: 273 MLSLLSACADLGD--LESGEKVHAKIIEMNKGKLSTLLGNALVDMYAKCGNIGKAVRVFW 330
Query: 210 LMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
L+ +++V+SW ++I G A G++E++L LF M+ T V P+E+TF GVL AC H G VDE
Sbjct: 331 LIRDKDVVSWNSVISGLAFHGHAEESLGLFREMKMTKVCPDEVTFVGVLAACSHAGNVDE 390
Query: 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAAC 329
G +YF ++ +Y +EP I+H GC+VD+ G+AG L+EA+ I +M++EPN I+W S L AC
Sbjct: 391 GNRYFHLMKNKYKIEPTIRHCGCVVDMLGRAGLLKEAFNFIASMKIEPNAIVWRSLLGAC 450
Query: 330 KEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKA 389
K H ++A+R +Q LRM ++ G + L+ ++Y +W+GAE VRKLM + V K
Sbjct: 451 KVHGDVELAKRANEQLLRMRGDQS--GDYVLLSNVYASQGEWDGAENVRKLMDDNGVTKN 508
Query: 390 RGSSVISSLS 399
RGSS + + S
Sbjct: 509 RGSSFVEAFS 518
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 87/381 (22%), Positives = 163/381 (42%), Gaps = 57/381 (14%)
Query: 31 NLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---------FARKLFDELPERNA 81
N+ + +H+ ++ G S+V L+ ++ G +A ++F ++P+ +
Sbjct: 13 NVGTLKQIHALMIVNGLTSNVGFLRKLVLTTAMSMVGPNATSAVIRYALQMFAQIPQPDT 72
Query: 82 VTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISN 141
WNT I+G S+S + A + +M R+V
Sbjct: 73 FMWNTYIRGSSQSHDPVHAVALYAQMDQRSV----------------------------- 103
Query: 142 EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFL 201
PD T VL C+ L V G + HG +++ + N + L+ +AKCG L
Sbjct: 104 ---KPDNFTFPFVLKACTKLFWVN--TGSAVHGRVLRLGFGSNVVVRNTLLVFHAKCGDL 158
Query: 202 KYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261
K A +F+ ++ +V++W+ALI G A RG A LF+ M K + +++ ++T
Sbjct: 159 KVATDIFDDSDKGDVVAWSALIAGYAQRGDLSVARKLFDEMP----KRDLVSWNVMITVY 214
Query: 262 VHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM---RLEPN 318
G ++ R+ F +E ++ I + ++ + EA E+ M P+
Sbjct: 215 TKHGEMESARRLF----DEAPMKD-IVSWNALIGGYVLRNLNREALELFDEMCGVGECPD 269
Query: 319 VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVR 378
+ S L+AC + + E+V + + M K + + + D+Y A RV
Sbjct: 270 EVTMLSLLSACADLGDLESGEKVHAKIIEMNKGKLSTLLGNALVDMYAKCGNIGKAVRVF 329
Query: 379 KLMLNQNVRKARGSSVISSLS 399
L+ +++V +SVIS L+
Sbjct: 330 WLIRDKDV--VSWNSVISGLA 348
>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
Length = 526
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 162/428 (37%), Positives = 253/428 (59%), Gaps = 38/428 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH- 59
+ L+SQM V D F+ +LK+CT + + +H + +LGF S+ +V +L++
Sbjct: 63 ISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYF 122
Query: 60 --------------------EYVVTS-----------FGFARKLFDELPERNAVTWNTMI 88
+ V S G AR+LFDE+P ++ V+WN MI
Sbjct: 123 HANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEMPVKDLVSWNVMI 182
Query: 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ 148
GY+K G + AR F+ +P R+V +W+AMIA Y+ G+ L++F EM S G PD+
Sbjct: 183 TGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRS-VGELPDE 241
Query: 149 MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW-ELNEQIATILVDMYAKCGFLKYALMV 207
+T+ ++LS C+ LG L G+ H I + + +L+ + L+DMYAKCG + AL V
Sbjct: 242 VTMLSLLSACTDLGD--LDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEV 299
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
F+ M E++V +W +++ G A G++E ++ LF M+ ++P+E+TF GVL AC H G V
Sbjct: 300 FQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRV 359
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
+EGR+YF ++ +EY++EP I+HYGCMVDL G+AG L EA++ I TM++EPN I+W + L
Sbjct: 360 EEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIEPNAIVWRTLLG 419
Query: 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVR 387
AC+ H ++ R Q L+M E+ G + L+ ++Y +W+G E+VRKLM + VR
Sbjct: 420 ACRIHGNVELGRRANMQLLKMRHDES--GDYVLLSNIYASRGEWDGVEKVRKLMDDSGVR 477
Query: 388 KARGSSVI 395
K G S+I
Sbjct: 478 KEAGCSLI 485
Score = 45.1 bits (105), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%)
Query: 196 AKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT 255
A G + YA +F + E + W +I GSA +A+SL+ M+ V+P++ TF
Sbjct: 23 AISGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFP 82
Query: 256 GVLTACVHTGLVDEG 270
VL AC V G
Sbjct: 83 FVLKACTRLCWVKMG 97
>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Vitis vinifera]
Length = 550
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 162/428 (37%), Positives = 253/428 (59%), Gaps = 38/428 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH- 59
+ L+SQM V D F+ +LK+CT + + +H + +LGF S+ +V +L++
Sbjct: 98 ISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYF 157
Query: 60 --------------------EYVVTS-----------FGFARKLFDELPERNAVTWNTMI 88
+ V S G AR+LFDE+P ++ V+WN MI
Sbjct: 158 HANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEMPVKDLVSWNVMI 217
Query: 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ 148
GY+K G + AR F+ +P R+V +W+AMIA Y+ G+ L++F EM S G PD+
Sbjct: 218 TGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRS-VGELPDE 276
Query: 149 MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW-ELNEQIATILVDMYAKCGFLKYALMV 207
+T+ ++LS C+ LG L G+ H I + + +L+ + L+DMYAKCG + AL V
Sbjct: 277 VTMLSLLSACTDLGD--LDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEV 334
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
F+ M E++V +W +++ G A G++E ++ LF M+ ++P+E+TF GVL AC H G V
Sbjct: 335 FQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRV 394
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
+EGR+YF ++ +EY++EP I+HYGCMVDL G+AG L EA++ I TM++EPN I+W + L
Sbjct: 395 EEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIEPNAIVWRTLLG 454
Query: 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVR 387
AC+ H ++ R Q L+M E+ G + L+ ++Y +W+G E+VRKLM + VR
Sbjct: 455 ACRIHGNVELGRRANMQLLKMRHDES--GDYVLLSNIYASRGEWDGVEKVRKLMDDSGVR 512
Query: 388 KARGSSVI 395
K G S+I
Sbjct: 513 KEAGCSLI 520
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 140/327 (42%), Gaps = 52/327 (15%)
Query: 21 HILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT---SFGFARKLFDELP 77
+ +SCT L IH S I+K GF S+ L++ + + +A +LF +
Sbjct: 18 QLWRSCTTIGTLKQIHA--SMIVK-GFNSNTSALRELIYASSIAISGTMAYAHQLFPHIT 74
Query: 78 ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
E + WNTMI+G ++S + PL ++ +S M
Sbjct: 75 EPDTFMWNTMIRGSAQSPS-----------PLNAISLYSQM------------------- 104
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
N + PD+ T VL C+ L V MG HG + + +E N + L+ +A
Sbjct: 105 --ENGCVRPDKFTFPFVLKACTRLCWVK--MGFGVHGRVFRLGFESNTFVRNTLIYFHAN 160
Query: 198 CGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGV 257
CG L A +F+ +R+V++W+AL G A RG A LF+ M + +++ +
Sbjct: 161 CGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEMPVKDL----VSWNVM 216
Query: 258 LTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE- 316
+T G ++ RK F + + + + M+ + G ++A E+ MR
Sbjct: 217 ITGYAKRGEMESARKLFDEVPKR-----DVVTWNAMIAGYVLCGSNQQALEMFEEMRSVG 271
Query: 317 --PNVIIWGSFLAACKEHKQFDMAERV 341
P+ + S L+AC + D +R+
Sbjct: 272 ELPDEVTMLSLLSACTDLGDLDAGQRI 298
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 7/128 (5%)
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILV--DMYAKCGFLK 202
+P + + C+ +G++ K H ++ + N L+ A G +
Sbjct: 10 SPSRQQRSQLWRSCTTIGTL-----KQIHASMIVKGFNSNTSALRELIYASSIAISGTMA 64
Query: 203 YALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACV 262
YA +F + E + W +I GSA +A+SL+ M+ V+P++ TF VL AC
Sbjct: 65 YAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACT 124
Query: 263 HTGLVDEG 270
V G
Sbjct: 125 RLCWVKMG 132
>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 155/413 (37%), Positives = 248/413 (60%), Gaps = 23/413 (5%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+ +M ++V D ++ + K T L + LH H++K G S+V+ +L++
Sbjct: 99 VSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINM 158
Query: 61 YVVTSF-GFARKLFDELPERNAVTWNTMIKGYSK-----------------SGNVCEARD 102
Y + AR +FD + + VTWN MI GY++ +G V AR
Sbjct: 159 YSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARK 218
Query: 103 FFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLG 162
+F +MP R+ SW+AMI YL Y L LFREM +++ + PD+ T+ +VL+ C+ LG
Sbjct: 219 YFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSK-IKPDEFTMVSVLTACAQLG 277
Query: 163 SVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTAL 222
+ L +G+ +I KN+ + + + L+DMY KCG ++ AL +F + +R+ +WTA+
Sbjct: 278 A--LELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAM 335
Query: 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD 282
+ G A G E+AL++F M V P+E+T+ GVL+AC HTG+VDEG+K+F + +
Sbjct: 336 VVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHG 395
Query: 283 LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVI 342
+EP I HYGCMVDL GKAG L+EA+E+I+ M ++PN I+WG+ L AC+ HK +MAER I
Sbjct: 396 IEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDAEMAERAI 455
Query: 343 KQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+Q L + N+G V+ L C++Y KW+ +R++M+++ ++K G S+I
Sbjct: 456 EQILEL--EPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCSLI 506
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 90/369 (24%), Positives = 157/369 (42%), Gaps = 67/369 (18%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+ S QS P L + ++C +L +HS +K G I + + +L
Sbjct: 1 MISMACSQSSPVTENPPLSLFETCKSMYHLK---QIHSRTIKTGIICNPIIQNKILSFCC 57
Query: 63 VTSFG---FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
FG +AR+LFD +PE + +WN M KGYS+
Sbjct: 58 SREFGDMCYARQLFDTIPEPSVFSWNIMFKGYSR-------------------------- 91
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
G+ L+ EM+ + PD T + G + SV L +G+ H +VK
Sbjct: 92 -----IACPKLGVSLYLEMLE-RNVKPDCYTYPFLFKGFTR--SVALQLGRELHCHVVKY 143
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ N L++MY+ CG + A +F++ + +V++W A+I GY+
Sbjct: 144 GLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMI-----SGYNR------ 192
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+K + +++T ++T V+TG VD RKYF + E + + M+D + +
Sbjct: 193 -------IKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVS-----WTAMIDGYLR 240
Query: 300 AGFLEEAYEVIRTM---RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
+EA + R M +++P+ S L AC + ++ E I+ + K +ND
Sbjct: 241 LNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEW-IRTYIDKNKVKNDTF 299
Query: 357 VFTLICDLY 365
V + D+Y
Sbjct: 300 VGNALIDMY 308
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 161/395 (40%), Positives = 235/395 (59%), Gaps = 6/395 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ M SVP ++++ +LK+C+ + L +H+HI+K+GF S +Y SLL+ Y
Sbjct: 105 LYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYS 164
Query: 63 VT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+ AR LFD++ +R+ V+WN+MI GY+K G + A + F MP RN+ SW++MI+
Sbjct: 165 KSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISG 224
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
+ AG L LF M G+ D + + + L C+ LG L GK H +I K+E
Sbjct: 225 CVGAGKPKEALNLFHRM-QTAGIKLDNVALVSTLQACADLGV--LDQGKWIHAYIKKHEI 281
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
E++ + +L+DMYAKCG L+ A+ VF MEE+ V WTA+I G A G +AL F
Sbjct: 282 EIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMK 341
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
MQ GV+PN+MTFTG+LTAC H GLV E + F+ ++ + +P I+HYGCMVDL G+AG
Sbjct: 342 MQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAG 401
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L+EA E+I M ++PN IWG+ L AC H ++ ++ I + L V P GG + +
Sbjct: 402 LLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQ-IGKILIQVDP-GHGGRYIHL 459
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
++ +W A RVR+ M Q V K G SVIS
Sbjct: 460 ASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVIS 494
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 165/328 (50%), Gaps = 25/328 (7%)
Query: 11 SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT----SF 66
S S++ LH+L+ C+ N+ + +H +LK G I A+ LL + + S
Sbjct: 13 SSESNAAQTLHLLQRCS---NMEELRQIHGQMLKTGLILDEIPASKLL-AFCASPNSGSL 68
Query: 67 GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAG 126
+AR +FD + N WNTMI+GYS S EA + M +V + L A
Sbjct: 69 AYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKAC 128
Query: 127 AYDPGLKLFREM---ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWEL 183
+ L+ +++ I G + T ++L+ S G + KSA ++ ++ +
Sbjct: 129 SSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDI-----KSAR--LLFDQVDQ 181
Query: 184 NEQIA-TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
+ ++ ++D Y KCG ++ A +F M ERN+ISWT++I G G ++AL+LF M
Sbjct: 182 RDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRM 241
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE-EYDLEPRIQHYGC-MVDLFGKA 300
Q G+K + + L AC G++D+G+ I + E +++P + GC ++D++ K
Sbjct: 242 QTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPIL---GCVLIDMYAKC 298
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
G LEEA EV R M E V +W + ++
Sbjct: 299 GDLEEAIEVFRKME-EKGVSVWTAMISG 325
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/369 (21%), Positives = 143/369 (38%), Gaps = 91/369 (24%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF +M + D+ +++ L++C L +H++I K HE
Sbjct: 235 LNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKK--------------HE 280
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
E + + +I Y+K G++ EA + F +M + V+ W+AMI+
Sbjct: 281 I----------------EIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMIS 324
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV--GLLMGKSA---HGF 175
Y G L+ F +M G+ P+QMT +L+ CSH G V L+ +S HGF
Sbjct: 325 GYAIHGRGREALEWFMKM-QTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGF 383
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
E +VD+ + G LK A
Sbjct: 384 KPSIEH------YGCMVDLLGRAGLLKEA------------------------------- 406
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMV 294
E+++ VKPN + +L AC G ++ G++ K++ ++P Y +
Sbjct: 407 ---EELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKIL---IQVDPGHGGRYIHLA 460
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWG-----------SFLAACKEHKQFDMAERVIK 343
+ AG +A V R M+ + + G FLA + H Q + +++
Sbjct: 461 SIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLE 520
Query: 344 QALRMVKPE 352
Q + ++ E
Sbjct: 521 QIVERLREE 529
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 78/197 (39%), Gaps = 43/197 (21%)
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYA--KCGFLKYALMVFELMEERNVISWTALICGSA 227
+ HG ++K L+E A+ L+ A G L YA VF+ + N W +I G +
Sbjct: 35 RQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYS 94
Query: 228 HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC-----------VH------------- 263
+ E+AL L+ M V N TF +L AC +H
Sbjct: 95 NSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIY 154
Query: 264 -----------TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312
+G + R F +D+ + + M+D + K G +E AYE+
Sbjct: 155 TTNSLLNVYSKSGDIKSARLLFDQVDQRDTVS-----WNSMIDGYTKCGEIEMAYEIFNH 209
Query: 313 MRLEPNVIIWGSFLAAC 329
M E N+I W S ++ C
Sbjct: 210 MP-ERNIISWTSMISGC 225
>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Vitis vinifera]
Length = 464
Score = 306 bits (785), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 160/422 (37%), Positives = 246/422 (58%), Gaps = 38/422 (9%)
Query: 7 MHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY----- 61
M + V SF+ ++K+C+ + L +H HI K GF SHV+V T+L+ Y
Sbjct: 1 MVQAQVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGK 60
Query: 62 VVTS---------------------------FGFARKLFDELPERNAVTWNTMIKGYSKS 94
+V + AR+LFDE+P RN +WN MI GYS+
Sbjct: 61 IVEARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYSRL 120
Query: 95 GNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAV 154
NV A F +MP R++ SW+ MIA Y + L +F EM +N G+ PD++T+ +
Sbjct: 121 RNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTN-GIDPDEVTMATI 179
Query: 155 LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER 214
+S C+HLG++ L GK H + ++ ++L+ I + L+DMYAKCG L +L+VF + ++
Sbjct: 180 ISACAHLGALDL--GKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKK 237
Query: 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF 274
N+ W ++I G A GY+E+AL++F MQ +KPN +TF VL AC H GLV+EGRK F
Sbjct: 238 NLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRF 297
Query: 275 KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
+ ++ + P I+HYGCMVDL GKAG LE+A E++R+MR+EPN +IWG+ L CK H+
Sbjct: 298 LSMSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLGGCKLHRN 357
Query: 335 FDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRK-ARGSS 393
+A+ + ++ ++++P N+ G +TL+ ++Y +W +R M V K + GSS
Sbjct: 358 LKIAQVAVNES-KVLEP-NNSGYYTLLVNMYAEVNRWSEVANIRATMKELGVEKTSPGSS 415
Query: 394 VI 395
I
Sbjct: 416 WI 417
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 101/230 (43%), Gaps = 41/230 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F++M + D ++ I+ +C H L + +H + +++GF VY+ ++L+
Sbjct: 158 LAVFNEMQTNGIDPDEVTMATIISACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDM 217
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y S + +F +L ++N WN++I+G + G EA F RM
Sbjct: 218 YAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEEALAMFSRM------------ 265
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI-VK 178
E + P+ +T +VL C+H G L+ + F+ +
Sbjct: 266 --------------------QREKIKPNGVTFISVLGACTHAG----LVEEGRKRFLSMS 301
Query: 179 NEWELNEQIA--TILVDMYAKCGFLKYAL-MVFELMEERNVISWTALICG 225
++ + +I +VD+ K G L+ AL +V + E N + W AL+ G
Sbjct: 302 RDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLGG 351
>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
Length = 546
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 163/429 (37%), Positives = 250/429 (58%), Gaps = 39/429 (9%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH--- 59
L++QM + V D F+ +LK CT +H +LK GF + +V +L++
Sbjct: 100 LYTQMENRGVKPDKFTFSFLLKGCTRLEWRKTGFCVHGKVLKYGFEVNSFVRNTLIYFHS 159
Query: 60 ----------------EYVVTSF-------------GFARKLFDELPERNAVTWNTMIKG 90
E V S+ G AR++FDE+P ++ V+WN MI G
Sbjct: 160 NCGDLVIARSIFYDLPERSVVSWSALTAGYARRGELGVARQIFDEMPVKDLVSWNVMITG 219
Query: 91 YSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMT 150
Y K+G + AR F+ P ++V +W+ MIA Y+ G L++F EM N G PD++T
Sbjct: 220 YVKNGEMENARTLFDEAPEKDVVTWNTMIAGYVLRGEQRQALEMFEEM-RNVGECPDEVT 278
Query: 151 IGAVLSGCSHLGSVGLLMGKSAHGFIVK-NEWELNEQIATILVDMYAKCGFLKYALMVFE 209
+ ++LS C+ LG L +G+ H I + +L+ + LVDMYAKCG ++ AL VF+
Sbjct: 279 MLSLLSACADLGD--LQVGRKLHCSISEMTRGDLSVLLGNALVDMYAKCGSIEIALQVFK 336
Query: 210 LMEERNVISWTALICGSAHRGYSEDALSLFEMMQA-TGVKPNEMTFTGVLTACVHTGLVD 268
M E++V +W ++I G A G++E+++ LF MQA +KPNE+TF GV+ AC H G V+
Sbjct: 337 KMREKDVTTWNSVIGGLAFHGHAEESIKLFAEMQALKNIKPNEITFVGVIVACSHAGNVE 396
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
EGR+YFK++ E YD+EP + H+GCMVDL G+AG L EA+E+I M +EPN IIW + L A
Sbjct: 397 EGRRYFKLMRERYDIEPNMIHHGCMVDLLGRAGLLSEAFELIAKMEIEPNAIIWRTLLGA 456
Query: 329 CKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRK 388
C+ H ++ ++ L++ + E+ G + L+ ++Y +W+GAE VRKLM + VRK
Sbjct: 457 CRVHGNVELGRLANERLLKLRRDES--GDYVLLSNIYASAGEWDGAEEVRKLMDDGGVRK 514
Query: 389 ARGSSVISS 397
G S+I +
Sbjct: 515 EAGRSLIEA 523
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 93/382 (24%), Positives = 164/382 (42%), Gaps = 54/382 (14%)
Query: 24 KSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDELPERN 80
K+C NNL + +H+ ++ GF S+ L+ +T G +A ++F ++ E +
Sbjct: 21 KNC---NNLLALKQIHATLIIKGFNSNRAALRELIFAGAMTISGAINYAHQVFAQITEPD 77
Query: 81 AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMIS 140
WNTM++G S+S N P + V ++ M
Sbjct: 78 IFMWNTMMRGSSQSKN-----------PSKVVLLYTQM---------------------E 105
Query: 141 NEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGF 200
N G+ PD+ T +L GC+ L G HG ++K +E+N + L+ ++ CG
Sbjct: 106 NRGVKPDKFTFSFLLKGCTRLEWRK--TGFCVHGKVLKYGFEVNSFVRNTLIYFHSNCGD 163
Query: 201 LKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260
L A +F + ER+V+SW+AL G A RG A +F+ M + +++ ++T
Sbjct: 164 LVIARSIFYDLPERSVVSWSALTAGYARRGELGVARQIFDEMPVKDL----VSWNVMITG 219
Query: 261 CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE---P 317
V G ++ R F DE E + + M+ + G +A E+ MR P
Sbjct: 220 YVKNGEMENARTLF---DEAP--EKDVVTWNTMIAGYVLRGEQRQALEMFEEMRNVGECP 274
Query: 318 NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERV 377
+ + S L+AC + + ++ M + + + + D+Y E A +V
Sbjct: 275 DEVTMLSLLSACADLGDLQVGRKLHCSISEMTRGDLSVLLGNALVDMYAKCGSIEIALQV 334
Query: 378 RKLMLNQNVRKARGSSVISSLS 399
K M ++V +SVI L+
Sbjct: 335 FKKMREKDV--TTWNSVIGGLA 354
>gi|356529920|ref|XP_003533534.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g15300-like [Glycine max]
Length = 555
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 163/431 (37%), Positives = 253/431 (58%), Gaps = 40/431 (9%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL---- 58
L++QM +SV D+F+ +LK+CT + +H + +LGF S+V V +LL
Sbjct: 94 LYAQMTHRSVKPDNFTFPLVLKACTKLFWVNTGSVVHGRVFRLGFGSNVVVRNTLLVFHA 153
Query: 59 -----------------HEYVVTS-----------FGFARKLFDELPERNAVTWNTMIKG 90
+ V S ARKLFDE+P+R+ V+WN MI
Sbjct: 154 KCGDLKVANDIFDDSDKGDVVAWSALIAGYAQRGDLSVARKLFDEMPKRDLVSWNVMITA 213
Query: 91 YSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMT 150
Y+K G + AR F+ P+++V SW+AM+ Y+ L+LF EM G PD++T
Sbjct: 214 YTKHGEMECARRLFDEAPMKDVVSWNAMVGGYVLHNLNQEALELFDEMCE-VGECPDEVT 272
Query: 151 IGAVLSGCSHLGSVGLLMGKSAHGFIVK-NEWELNEQIATILVDMYAKCGFLKYALMVFE 209
+ ++LS C+ LG G+ H I++ N+ +L+ + LVDMYAKCG + + VF
Sbjct: 273 MLSLLSACADLGD----XGEKVHAKIMELNKGKLSTLLGNALVDMYAKCGNIGKGVCVFW 328
Query: 210 LMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
L+ +++++SW ++I G A G++E++L LF MQ T V P+E+TF GVL AC HTG VDE
Sbjct: 329 LIRDKDMVSWNSVIGGLAFHGHAEESLGLFREMQRTKVCPDEITFVGVLAACSHTGNVDE 388
Query: 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAAC 329
G +YF ++ +Y +EP I+H GC+VD+ +AG L+EA++ I +M++EPN I+W S L AC
Sbjct: 389 GNRYFYLMKNKYKIEPNIRHCGCVVDMLARAGLLKEAFDFIASMKIEPNAIVWRSLLGAC 448
Query: 330 KEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKA 389
K H ++A+R +Q LRM ++ G + L+ ++Y + +W+GAE VRKLM + V K
Sbjct: 449 KVHGDVELAKRATEQLLRMRVDQS--GDYVLLSNVYASHGEWDGAENVRKLMDDNGVTKT 506
Query: 390 RGSSVISSLSV 400
RGSS + + +
Sbjct: 507 RGSSFVEAYRI 517
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/350 (23%), Positives = 149/350 (42%), Gaps = 59/350 (16%)
Query: 29 FNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---------FARKLFDELPER 79
NL + +H+ ++ GF S+V L+ ++ G +A ++F ++P+
Sbjct: 11 ITNLGTLRQIHALMIVNGFTSNVGFLRKLVLTTAMSMVGPAATTAVTQYAVQMFAQIPQP 70
Query: 80 NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI 139
+ WNT I+G S+S + A + +M R+V
Sbjct: 71 DTFMWNTYIRGSSQSHDPVHAVALYAQMTHRSV--------------------------- 103
Query: 140 SNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG 199
PD T VL C+ L V G HG + + + N + L+ +AKCG
Sbjct: 104 -----KPDNFTFPLVLKACTKLFWVN--TGSVVHGRVFRLGFGSNVVVRNTLLVFHAKCG 156
Query: 200 FLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLT 259
LK A +F+ ++ +V++W+ALI G A RG A LF+ M K + +++ ++T
Sbjct: 157 DLKVANDIFDDSDKGDVVAWSALIAGYAQRGDLSVARKLFDEMP----KRDLVSWNVMIT 212
Query: 260 ACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE--- 316
A G ++ R+ F +E ++ + + MV + +EA E+ M E
Sbjct: 213 AYTKHGEMECARRLF----DEAPMKDVVS-WNAMVGGYVLHNLNQEALELFDEM-CEVGE 266
Query: 317 -PNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365
P+ + S L+AC + D E+V + + + K + + + D+Y
Sbjct: 267 CPDEVTMLSLLSACADLG--DXGEKVHAKIMELNKGKLSTLLGNALVDMY 314
>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 160/395 (40%), Positives = 234/395 (59%), Gaps = 6/395 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ M SVP ++++ +LK+C+ + +H+HI+K+GF S +Y SLL+ Y
Sbjct: 105 LYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYS 164
Query: 63 VT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+ AR LFD++ +R+ V+WN+MI GY+K G + A + F MP RN+ SW++MI+
Sbjct: 165 KSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISG 224
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
+ AG L LF M G+ D + + + L C+ LG L GK H +I K+E
Sbjct: 225 CVGAGKPKEALNLFHRM-QTAGIKLDNVALVSTLQACADLGV--LDQGKWIHAYIKKHEI 281
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
E++ + +L+DMYAKCG L+ A+ VF MEE+ V WTA+I G A G +AL F
Sbjct: 282 EIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMK 341
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
MQ GV+PN+MTFTG+LTAC H GLV E + F+ ++ + +P I+HYGCMVDL G+AG
Sbjct: 342 MQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAG 401
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L+EA E+I M ++PN IWG+ L AC H ++ ++ I + L V P GG + +
Sbjct: 402 LLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQ-IGKILIQVDP-GHGGRYIHL 459
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
++ +W A RVR+ M Q V K G SVIS
Sbjct: 460 ASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVIS 494
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 96/329 (29%), Positives = 167/329 (50%), Gaps = 27/329 (8%)
Query: 11 SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT----SF 66
S S++ LH+L+ C+ N+ + +H +LK G I A+ LL + + S
Sbjct: 13 SSESNAAQTLHLLQRCS---NMEELRQIHGQMLKTGLILDEIPASKLL-AFCASPNSGSL 68
Query: 67 GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA----SWSAMIAAY 122
+AR +FD + N WNTMI+GYS S EA + M +V ++ ++ A
Sbjct: 69 AYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKAC 128
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+ A + ++ +I G + T ++L+ S G + KSA ++ ++ +
Sbjct: 129 SSMSASEETQQIHAHII-KMGFGSEIYTTNSLLNVYSKSGDI-----KSAR--LLFDQVD 180
Query: 183 LNEQIA-TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ ++ ++D Y KCG ++ A +F M ERN+ISWT++I G G ++AL+LF
Sbjct: 181 QRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHR 240
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE-EYDLEPRIQHYGC-MVDLFGK 299
MQ G+K + + L AC G++D+G+ I + E +++P + GC ++D++ K
Sbjct: 241 MQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPIL---GCVLIDMYAK 297
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
G LEEA EV R M E V +W + ++
Sbjct: 298 CGDLEEAIEVFRKME-EKGVSVWTAMISG 325
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/369 (21%), Positives = 143/369 (38%), Gaps = 91/369 (24%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF +M + D+ +++ L++C L +H++I K HE
Sbjct: 235 LNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKK--------------HE 280
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
E + + +I Y+K G++ EA + F +M + V+ W+AMI+
Sbjct: 281 I----------------EIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMIS 324
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV--GLLMGKS---AHGF 175
Y G L+ F +M G+ P+QMT +L+ CSH G V L+ +S HGF
Sbjct: 325 GYAIHGRGREALEWFMKM-QTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGF 383
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
E +VD+ + G LK A
Sbjct: 384 KPSIEH------YGCMVDLLGRAGLLKEA------------------------------- 406
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMV 294
E+++ VKPN + +L AC G ++ G++ K++ ++P Y +
Sbjct: 407 ---EELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKIL---IQVDPGHGGRYIHLA 460
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWG-----------SFLAACKEHKQFDMAERVIK 343
+ AG +A V R M+ + + G FLA + H Q + +++
Sbjct: 461 SIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLE 520
Query: 344 QALRMVKPE 352
Q + ++ E
Sbjct: 521 QIVERLREE 529
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 78/197 (39%), Gaps = 43/197 (21%)
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYA--KCGFLKYALMVFELMEERNVISWTALICGSA 227
+ HG ++K L+E A+ L+ A G L YA VF+ + N W +I G +
Sbjct: 35 RQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYS 94
Query: 228 HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC-----------VH------------- 263
+ E+AL L+ M V N TF +L AC +H
Sbjct: 95 NSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIY 154
Query: 264 -----------TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312
+G + R F +D+ + + M+D + K G +E AYE+
Sbjct: 155 TTNSLLNVYSKSGDIKSARLLFDQVDQRDTVS-----WNSMIDGYTKCGEIEMAYEIFNH 209
Query: 313 MRLEPNVIIWGSFLAAC 329
M E N+I W S ++ C
Sbjct: 210 MP-ERNIISWTSMISGC 225
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 152/397 (38%), Positives = 249/397 (62%), Gaps = 10/397 (2%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+ Q RQ + D+ + ++KSCT + +++ H HI+K GF VYV SL+H Y
Sbjct: 105 HFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMY 164
Query: 62 VVTSFG---FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
+FG A +F + + V+W +MI+G++K G+V AR F++MP +N+ +WS M
Sbjct: 165 --ATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTM 222
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I+ Y +D ++LF+ ++ ++G+ ++ + +V+S C+HLG+ L +G+ AH ++VK
Sbjct: 223 ISGYAQNNHFDKAVELFK-VLQSQGVRANETVMVSVISSCAHLGA--LELGERAHDYVVK 279
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
N LN + T LVDMYA+CG + A+ VFE + ER+ +SWTALI G A GYSE +L
Sbjct: 280 NGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKY 339
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F M G+ P ++TFT VL+AC H GLV+ G + F+ + ++ +EPR++HYGCMVDL G
Sbjct: 340 FATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLG 399
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG LEEA + M ++PN +WG+ L AC+ HK ++ ERV K ++++ P++ G +
Sbjct: 400 RAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQLL-PQH-SGYY 457
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y ++WE +R++M + ++K G S+I
Sbjct: 458 VLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLI 494
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/364 (22%), Positives = 161/364 (44%), Gaps = 78/364 (21%)
Query: 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG-----FARKLFDELP 77
L++C+ +L +IH +++++ I V+ A+ L+ V S G +A ++F ++
Sbjct: 24 LETCSDLTHLKIIH---AYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQ 80
Query: 78 ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
N +N MI+G+S S N +A F+ +
Sbjct: 81 NPNLFIFNAMIRGHSGSKNPDQAFHFYVQS------------------------------ 110
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA- 196
+GL PD +T ++ C+ L + MG AHG I+K+ +E + + LV MYA
Sbjct: 111 --QRQGLLPDNLTFPFLVKSCTKLHCIS--MGSQAHGHIIKHGFEKDVYVQNSLVHMYAT 166
Query: 197 ------------------------------KCGFLKYALMVFELMEERNVISWTALICGS 226
KCG ++ A +F+ M E+N+++W+ +I G
Sbjct: 167 FGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGY 226
Query: 227 AHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR 286
A + + A+ LF+++Q+ GV+ NE V+++C H G ++ G + + + +
Sbjct: 227 AQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKN-GMTLN 285
Query: 287 IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQAL 346
+ +VD++ + G +++A V + E + + W + +A H +ER +K
Sbjct: 286 LILGTALVDMYARCGSIDKAVWVFEDLP-ERDTLSWTALIAGLAMH---GYSERSLKYFA 341
Query: 347 RMVK 350
MV+
Sbjct: 342 TMVE 345
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 47/231 (20%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF + Q V ++ ++ ++ SC H L + H +++K G ++ + T+L+
Sbjct: 236 VELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDM 295
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y S A +F++LPER+ ++W +I G + G + ER
Sbjct: 296 YARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHG-------YSER------------- 335
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
LK F M+ GLTP +T AVLS CSH G V GF +
Sbjct: 336 -----------SLKYFATMV-EAGLTPRDITFTAVLSACSHGGLV-------ERGFQIFE 376
Query: 180 EWELNEQIATIL------VDMYAKCGFLKYA-LMVFELMEERNVISWTALI 223
+ + ++ L VD+ + G L+ A V ++ + N W AL+
Sbjct: 377 SMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALL 427
>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
Length = 933
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 158/428 (36%), Positives = 250/428 (58%), Gaps = 38/428 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L+ QM R +V S++ ++K+C + L +H H+ + GF SHV+V TSL+
Sbjct: 65 LELYVQMLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDF 124
Query: 61 YV--------------------------------VTSFGFARKLFDELPERNAVTWNTMI 88
Y V A +LFD +P+RN TWNT+I
Sbjct: 125 YSSMGRIEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNLATWNTLI 184
Query: 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ 148
GY++ V A F +MP R++ SW+ MI Y + L +F EM + G++PD+
Sbjct: 185 DGYARLREVDVAELLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEM-AKHGISPDE 243
Query: 149 MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVF 208
+T+ V+S C+HLG++ L GK H +I+++ + L+ I + L+DMYAKCG L +L++F
Sbjct: 244 VTMATVISACAHLGALDL--GKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMF 301
Query: 209 ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
+ E+N+ W ++I G A GY+E+AL++F+ M+ +KPN +TF VL+AC H GL++
Sbjct: 302 FKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIE 361
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
EGRK F + ++ + P ++HYGCMVDL KAG LEEA ++IRTM+LEPN +IWG+ L+
Sbjct: 362 EGRKRFASMTRDHSIPPGVEHYGCMVDLLSKAGLLEEALQLIRTMKLEPNAVIWGALLSG 421
Query: 329 CKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV-R 387
CK H+ ++A+ V L +++P N G +TL+ ++ +W A ++R M Q V +
Sbjct: 422 CKLHRNLEIAQ-VAANKLMVLEPGNS-GYYTLLVNMNAEVNRWGEAAKIRLTMKEQGVEK 479
Query: 388 KARGSSVI 395
+ GSS I
Sbjct: 480 RCPGSSWI 487
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 19/188 (10%)
Query: 201 LKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260
+ YA++ + ME NV + A+I G AL L+ M V P TF ++ A
Sbjct: 30 MDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQMLRANVSPTSYTFPSLIKA 89
Query: 261 CVHTGLVDEGR----KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE 316
C GLV + R + + +D +Q +VD + G +EE+ V M E
Sbjct: 90 C---GLVSQLRFAEAVHGHVWRNGFDSHVFVQ--TSLVDFYSSMGRIEESVRVFDEMP-E 143
Query: 317 PNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAER 376
+V W + ++ A R+ + P+ + + + D Y + + AE
Sbjct: 144 RDVFAWTTMVSGLVRVGDMSSAGRLFD-----MMPDRNLATWNTLIDGYARLREVDVAE- 197
Query: 377 VRKLMLNQ 384
L+ NQ
Sbjct: 198 ---LLFNQ 202
>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 159/428 (37%), Positives = 242/428 (56%), Gaps = 40/428 (9%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
++ QM + + D+++I +LK+C + +H +K+G S VYV+ +L+ Y
Sbjct: 127 VYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYA 186
Query: 63 VTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCE---------------------- 99
V ARK+FD P+R+ V+W TMI+GY K G E
Sbjct: 187 VCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLYIIRNSNVNLDVFVGNAL 246
Query: 100 ------------ARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD 147
AR F+ MP++NV SW++MI+ G + L +FR+M G+ PD
Sbjct: 247 VDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKM-QRLGVKPD 305
Query: 148 QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMV 207
+T+ AVL+ C++LG L +GK H ++ +N+ + I LVDMYAKCG + A V
Sbjct: 306 DVTLVAVLNSCANLGV--LELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWV 363
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
F+ M ++V S+TA+I G A G AL LF M G++P+E+TF GVLTAC H GLV
Sbjct: 364 FQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLV 423
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
+EGRKYF+ + Y+L P+++HYGCMVDL G+AG + EA E IR M +EP+ + G+ L
Sbjct: 424 EEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLG 483
Query: 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVR 387
ACK H + ++ E V+K+ + ++P DG + L+ ++Y+ +W A ++RK M +N+
Sbjct: 484 ACKIHGKVELGESVMKK-IEKIEPRKDGA-YVLMSNIYSSANRWRDALKLRKTMKERNLE 541
Query: 388 KARGSSVI 395
K G S I
Sbjct: 542 KTPGCSSI 549
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 77/353 (21%), Positives = 147/353 (41%), Gaps = 84/353 (23%)
Query: 11 SVPSD----SFSILHILKSCTHFNNLTVIHHLHSHILKL--GFISHVYVAT---SLLHEY 61
++P D S L L++C L +H+ I+K + + ++T +L +
Sbjct: 28 TLPHDFNPHKLSFLSTLQTCKSIKGL---KQIHASIIKTMPSPDAQLTISTRLSALCAQS 84
Query: 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+ +A L +L N +N +I+G + S N D E
Sbjct: 85 LPIDPRYALSLLAQLRTPNLPLYNAIIRGLATSNN-----DSIE---------------- 123
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
GL ++++M+S +G+ PD TI VL C+ S + G+ HG +K
Sbjct: 124 ---------GLVVYKQMLS-KGIVPDNYTIPFVLKACAE--SRAVREGEEVHGQAIKMGL 171
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ ++ L+ MYA C ++ A VF+ +R+++SWT +I G G++ + + L+ +
Sbjct: 172 ASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLY-I 230
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
++ + V N F G +VD++ K G
Sbjct: 231 IRNSNV--NLDVFVG----------------------------------NALVDMYLKCG 254
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-VKPEN 353
A +V + M ++ NV+ W S ++ + QF + + ++ R+ VKP++
Sbjct: 255 DANFARKVFQEMPVK-NVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDD 306
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 71/317 (22%), Positives = 125/317 (39%), Gaps = 74/317 (23%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F +M R V D +++ +L SC + +L+LG H Y L
Sbjct: 291 LYMFRKMQRLGVKPDDVTLVAVLNSCANLG-----------VLELGKWVHAY-----LDR 334
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ + GF N ++ Y+K G++ +A F+ M ++V S++AMI
Sbjct: 335 NQIRADGF--------------IGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIV 380
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
G L LF EM G+ PD++T VL+ CSH VGL+ + +
Sbjct: 381 GLAMHGQGGKALDLFSEM-PKMGIEPDEVTFVGVLTACSH---VGLVEEGRKYFEDMSTI 436
Query: 181 WELNEQIA--TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ L Q+ +VD+ + G + A
Sbjct: 437 YNLRPQLEHYGCMVDLLGRAGLINEA---------------------------------- 462
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQ-HYGCMVDLF 297
E ++ ++P+ +L AC G V+ G K I++ +EPR Y M +++
Sbjct: 463 EEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEK---IEPRKDGAYVLMSNIY 519
Query: 298 GKAGFLEEAYEVIRTMR 314
A +A ++ +TM+
Sbjct: 520 SSANRWRDALKLRKTMK 536
>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
[Vitis vinifera]
Length = 576
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 157/396 (39%), Positives = 242/396 (61%), Gaps = 10/396 (2%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L++++ + D++S+ +LK+ + V +H + G +S ++V T+L+ Y
Sbjct: 126 LYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHCQAIGTGLVSDIHVVTALIQMY- 184
Query: 63 VTSFGF---ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
+S G AR+LFD + R+ WN M+ GY+K G+V AR FERMP RNV SW+A+I
Sbjct: 185 -SSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVI 243
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A Y + + +FR M E + PD++ + A LS C+HLG++ L G+ H +I K+
Sbjct: 244 AGYAQMDRPNEAITMFRRM-QLEEVEPDEIAMLAALSACAHLGALEL--GEWIHNYIDKH 300
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ L+DMYAKCG ++ AL VF+ ME ++VI+WT++I G A G +AL +F
Sbjct: 301 GLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMF 360
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M+ +KPNE+TF +L+AC H GLV+ GR YFK + +Y ++P+IQHYGCM+DL G+
Sbjct: 361 SCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGR 420
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AGFL+EA E++R M E N IWGS LAA + H ++ ++ ++ ++ V+P N G +T
Sbjct: 421 AGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELGKQALQHLIK-VEPHNSGN-YT 478
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y KW A VRK+M + V+K G S I
Sbjct: 479 LLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCI 514
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 145/324 (44%), Gaps = 21/324 (6%)
Query: 16 SFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGF---ARKL 72
S+ +L +LK C+ NL +H H +L G + + + +S GF + +
Sbjct: 41 SYHLLSLLKQCS---NLKHLHQTHCFMLSRGLDQDNILLSRFIE--ACSSLGFSHYSHSI 95
Query: 73 FDELPERNAVTWNTMIKGYSKSGNVCEARDFFERM---PLR-NVASWSAMIAAYLNAGAY 128
F + +NT+IK S EA + R+ LR + S ++ A + A
Sbjct: 96 FTHKTRPDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAI 155
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
G ++ + I GL D + A++ S G V + G ++ N +A
Sbjct: 156 HVGRQIHCQAIGT-GLVSDIHVVTALIQMYSSCGCVSEAR-QLFDGVCFRDVAFWNAMVA 213
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
YAK G + A +FE M ERNVISWTA+I G A +A+++F MQ V+
Sbjct: 214 G-----YAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVE 268
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+E+ L+AC H G ++ G ID ++ L + ++D++ K G +E+A E
Sbjct: 269 PDEIAMLAALSACAHLGALELGEWIHNYID-KHGLSKIVPLNNALIDMYAKCGKIEKALE 327
Query: 309 VIRTMRLEPNVIIWGSFLAACKEH 332
V + M +VI W S + H
Sbjct: 328 VFKNME-HKSVITWTSMIDGLALH 350
>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
Length = 576
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 157/396 (39%), Positives = 242/396 (61%), Gaps = 10/396 (2%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L++++ + D++S+ +LK+ + V +H + G +S ++V T+L+ Y
Sbjct: 126 LYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHCQAIGTGLVSDIHVVTALIQMY- 184
Query: 63 VTSFGF---ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
+S G AR+LFD + R+ WN M+ GY+K G+V AR FERMP RNV SW+A+I
Sbjct: 185 -SSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVI 243
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A Y + + +FR M E + PD++ + A LS C+HLG++ L G+ H +I K+
Sbjct: 244 AGYAQMDRPNEAITMFRRM-QLEEVEPDEIAMLAALSACAHLGALEL--GEWIHNYIDKH 300
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ L+DMYAKCG ++ AL VF+ ME ++VI+WT++I G A G +AL +F
Sbjct: 301 GLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMF 360
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M+ +KPNE+TF +L+AC H GLV+ GR YFK + +Y ++P+IQHYGCM+DL G+
Sbjct: 361 SCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGR 420
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AGFL+EA E++R M E N IWGS LAA + H ++ ++ ++ ++ V+P N G +T
Sbjct: 421 AGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELGKQALQHLIK-VEPHNSGN-YT 478
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y KW A VRK+M + V+K G S I
Sbjct: 479 LLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCI 514
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 145/324 (44%), Gaps = 21/324 (6%)
Query: 16 SFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGF---ARKL 72
S+ +L +LK C+ NL +H H +L G + + + +S GF + +
Sbjct: 41 SYHLLSLLKQCS---NLKHLHQTHCFMLSRGLDQDNILLSRFIE--ACSSLGFSHYSHSI 95
Query: 73 FDELPERNAVTWNTMIKGYSKSGNVCEARDFFERM---PLR-NVASWSAMIAAYLNAGAY 128
F + +NT+IK S EA + R+ LR + S ++ A + A
Sbjct: 96 FTHKTRPDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAI 155
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
G ++ + I GL D + A++ S G V + G ++ N +A
Sbjct: 156 HVGRQIHCQAIGT-GLVSDIHVVTALIQMYSSCGCVSEAR-QLFDGVCFRDVAFWNAMVA 213
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
YAK G + A +FE M ERNVISWTA+I G A +A+++F MQ V+
Sbjct: 214 G-----YAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVE 268
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+E+ L+AC H G ++ G ID ++ L + ++D++ K G +E+A E
Sbjct: 269 PDEIAMLAALSACAHLGALELGEWIHNYID-KHGLSKIVPLNNALIDMYAKCGKIEKALE 327
Query: 309 VIRTMRLEPNVIIWGSFLAACKEH 332
V + M +VI W S + H
Sbjct: 328 VFKNME-HKSVITWTSMIDGLALH 350
>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 516
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 151/395 (38%), Positives = 235/395 (59%), Gaps = 6/395 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ QM SVP +S++ +LK+C+ + +H+HI+K GF VY SLL Y
Sbjct: 97 LYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQIHAHIIKRGFGLEVYATNSLLRVYA 156
Query: 63 VT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
++ + A LF++LP R+ V+WN MI GY K GN+ A F+ MP +NV SW+ MI
Sbjct: 157 ISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDMAYKIFQAMPEKNVISWTTMIVG 216
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
++ G + L L ++M+ G+ PD +T+ LS C+ LG+ L GK H +I KNE
Sbjct: 217 FVRIGMHKEALSLLQQMLV-AGIKPDSITLSCSLSACAGLGA--LEQGKWIHTYIEKNEI 273
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+++ + +L DMY KCG ++ AL+VF +E++ V +WTA+I G A G +AL F
Sbjct: 274 KIDPVLGCVLTDMYVKCGEMEKALLVFSKLEKKCVCAWTAIIGGLAIHGKGREALDWFTQ 333
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
MQ G+ PN +TFT +LTAC H GL +EG+ F+ + Y+++P ++HYGCMVDL G+AG
Sbjct: 334 MQKAGINPNSITFTAILTACSHAGLTEEGKSLFESMSSVYNIKPSMEHYGCMVDLMGRAG 393
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L+EA E I +M ++PN IWG+ L AC+ HK F++ + + K + + P++ G + +
Sbjct: 394 LLKEAREFIESMPVKPNAAIWGALLNACQLHKHFELGKEIGKILIEL-DPDHSGR-YIHL 451
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
+Y +W RVR + ++ + G S I+
Sbjct: 452 ASIYAAAGEWNQVVRVRSQIKHRGLLNHPGCSSIT 486
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 158/333 (47%), Gaps = 29/333 (8%)
Query: 12 VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV---VTSFGF 68
+P ++ +L+ C+ N+ + +H +LK G I + ++LL Y + + +
Sbjct: 6 LPPNTEQTQALLERCS---NMKELMQIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAY 62
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
R +FD + N V WNTM++ YS S + A + +M +V S L A +
Sbjct: 63 TRVVFDSISSPNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACS- 121
Query: 129 DPGLKLFREM------ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
L F E I G + ++L + G++ +SAH ++ N+
Sbjct: 122 --ALSAFEETQQIHAHIIKRGFGLEVYATNSLLRVYAISGNI-----QSAH--VLFNQLP 172
Query: 183 LNEQIA-TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ ++ I++D Y K G L A +F+ M E+NVISWT +I G G ++ALSL +
Sbjct: 173 TRDIVSWNIMIDGYIKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQ 232
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE-EYDLEPRIQHYGC-MVDLFGK 299
M G+KP+ +T + L+AC G +++G+ I++ E ++P + GC + D++ K
Sbjct: 233 MLVAGIKPDSITLSCSLSACAGLGALEQGKWIHTYIEKNEIKIDPVL---GCVLTDMYVK 289
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
G +E+A V + + V W + + H
Sbjct: 290 CGEMEKALLVFSKLE-KKCVCAWTAIIGGLAIH 321
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 99/254 (38%), Gaps = 43/254 (16%)
Query: 144 LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGF--L 201
L P+ A+L CS++ + HG ++K N+ + L+ YA+ L
Sbjct: 6 LPPNTEQTQALLERCSNMKEL-----MQIHGQLLKKGTIRNQLTVSTLLVSYARIELVNL 60
Query: 202 KYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261
Y +VF+ + N + W ++ ++ E AL L+ M V N TF +L AC
Sbjct: 61 AYTRVVFDSISSPNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKAC 120
Query: 262 VHTGLVDEGRKYFKMIDEE---------------YDLEPRIQ---------------HYG 291
+E ++ I + Y + IQ +
Sbjct: 121 SALSAFEETQQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWN 180
Query: 292 CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-VK 350
M+D + K G L+ AY++ + M E NVI W + + A +++Q L +K
Sbjct: 181 IMIDGYIKFGNLDMAYKIFQAMP-EKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIK 239
Query: 351 PENDGGVFTLICDL 364
P++ TL C L
Sbjct: 240 PDS----ITLSCSL 249
>gi|218189222|gb|EEC71649.1| hypothetical protein OsI_04090 [Oryza sativa Indica Group]
Length = 419
Score = 301 bits (770), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 168/408 (41%), Positives = 237/408 (58%), Gaps = 28/408 (6%)
Query: 1 MQLFSQMHRQSVPSDSF-----SILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVAT 55
++L+S + + PSD + LK + +L ++ H H+H+++ +++ +VA+
Sbjct: 26 LRLYSLIRIHARPSDPALFAWRPAVLALKPLSAAASLPLLSHFHAHLIRSNLLAYPHVAS 85
Query: 56 SLLHEYVVTSFGFARKLFDELPER--NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA 113
SLL Y + S A LFD++P N V N M+ +S ++ AR FF+ +P +
Sbjct: 86 SLLRGYSLLSPEHAHHLFDQIPPSTCNLVVVNVMLGSLCRSSDLPSARAFFDGIPDKEPC 145
Query: 114 SWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL--MGKS 171
L FR M L D + + VL+GC+ S GLL ++
Sbjct: 146 R----------------RLAFFRTMTFTTQLAADYVMLVTVLTGCA---SAGLLPVSCRA 186
Query: 172 AHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGY 231
HG+IV+ + T L+D YAK G L YA VF + RNV+ WTA+ICGSA
Sbjct: 187 IHGYIVRRGITFTMHLGTALIDCYAKAGRLDYASRVFCRVPLRNVMHWTAMICGSAAHLG 246
Query: 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG 291
SE A+ LFE M +GV+PNEMTFT VL+AC GLVD+GR++FK++ + Y EP I HYG
Sbjct: 247 SEKAIQLFEEMCRSGVQPNEMTFTAVLSACGQAGLVDQGRRFFKLMVDTYGFEPTIHHYG 306
Query: 292 CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351
C+VDL+ KAG LE+AYEVI+TMR+EPN+IIW S LAACK+ K F +A I++ L M
Sbjct: 307 CIVDLYAKAGKLEDAYEVIKTMRMEPNIIIWTSLLAACKKFKNFYIAVEGIEKVLSMEIS 366
Query: 352 ENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLS 399
E +GG++ LI DLY M +WE RVR LM +NV K RGSS I ++
Sbjct: 367 EENGGLYALISDLYAMGGQWEDVLRVRSLMEERNVWKIRGSSSIKGIT 414
>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 600
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 160/429 (37%), Positives = 241/429 (56%), Gaps = 39/429 (9%)
Query: 1 MQLFSQMHRQS-VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+Q + M +S V S++ ++K+CT + + +H HI K GF SH++V T+L+
Sbjct: 122 LQCYVHMLEESNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVD 181
Query: 60 EYV--------------------------------VTSFGFARKLFDELPERNAVTWNTM 87
Y V ARKLF+E+PERN TWNTM
Sbjct: 182 FYSKLEILSEARKVFDEMCERDAFAWTAMLSALARVGDMDSARKLFEEMPERNTATWNTM 241
Query: 88 IKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD 147
I GY++ GNV A F +MP +++ SW+ MI Y Y L ++ EM N G+ PD
Sbjct: 242 IDGYTRLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLN-GIIPD 300
Query: 148 QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMV 207
++T+ V S C+H+G++ L GK H +++ L+ I + LVDMYAKCG L +L++
Sbjct: 301 EVTMSTVASACAHIGALEL--GKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLI 358
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
F + ++N+ W A+I G A GY+E AL +F +M+ + PN +TF +L+AC H GLV
Sbjct: 359 FFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLV 418
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
DEGR F + +YD+ P I+HYGCMVD+ K+G+L EA E+I++M EPN IIWG+ L
Sbjct: 419 DEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLN 478
Query: 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV- 386
CK H ++AE ++Q L +++P N G + L+ +Y + W +R +M + V
Sbjct: 479 GCKLHGNCEIAEDAVEQ-LMILEPMNSGH-YNLLVSMYAEEKDWMEVAHIRSMMKEKGVE 536
Query: 387 RKARGSSVI 395
+K GSS I
Sbjct: 537 KKYPGSSWI 545
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/343 (21%), Positives = 138/343 (40%), Gaps = 57/343 (16%)
Query: 7 MHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSF 66
+ S PS ++L+ +K+C+ N L H L + ++K I + L+H+++ SF
Sbjct: 30 LQPPSRPSFKQTLLNRIKNCSTINEL---HGLCASMIKTNAIQDCF----LVHQFISASF 82
Query: 67 G-----FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+ F ++ N +N MIKG+ G P R
Sbjct: 83 ALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCG-----------YPFR----------- 120
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
L+ + M+ + P T +++ C+ + +V L G+ H I K +
Sbjct: 121 ---------ALQCYVHMLEESNVLPTSYTFSSLVKACTFMCAVEL--GQMVHCHIWKKGF 169
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
E + + T LVD Y+K L A VF+ M ER+ +WTA++ A G + A LFE
Sbjct: 170 ESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTAMLSALARVGDMDSARKLFEE 229
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M + N T+ ++ G V+ F + + I + M+ + +
Sbjct: 230 MP----ERNTATWNTMIDGYTRLGNVESAELLFNQMPTK-----DIISWTTMITCYSQNK 280
Query: 302 FLEEAYEVIRTMRLE---PNVIIWGSFLAACKEHKQFDMAERV 341
++A + MRL P+ + + +AC ++ + +
Sbjct: 281 QYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEI 323
>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 697
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 160/429 (37%), Positives = 241/429 (56%), Gaps = 39/429 (9%)
Query: 1 MQLFSQMHRQS-VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+Q + M +S V S++ ++K+CT + + +H HI K GF SH++V T+L+
Sbjct: 219 LQCYVHMLEESNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVD 278
Query: 60 EYV--------------------------------VTSFGFARKLFDELPERNAVTWNTM 87
Y V ARKLF+E+PERN TWNTM
Sbjct: 279 FYSKLEILSEARKVFDEMCERDAFAWTAMVSALARVGDMDSARKLFEEMPERNTATWNTM 338
Query: 88 IKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD 147
I GY++ GNV A F +MP +++ SW+ MI Y Y L ++ EM N G+ PD
Sbjct: 339 IDGYARLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLN-GIIPD 397
Query: 148 QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMV 207
++T+ V S C+H+G++ L GK H +++ L+ I + LVDMYAKCG L +L++
Sbjct: 398 EVTMSTVASACAHIGALEL--GKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLI 455
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
F + ++N+ W A+I G A GY+E AL +F +M+ + PN +TF +L+AC H GLV
Sbjct: 456 FFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLV 515
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
DEGR F + +YD+ P I+HYGCMVD+ K+G+L EA E+I++M EPN IIWG+ L
Sbjct: 516 DEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLN 575
Query: 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV- 386
CK H ++AE ++Q L +++P N G + L+ +Y + W +R +M + V
Sbjct: 576 GCKLHGNCEIAEDAVEQ-LMILEPMNSGH-YNLLVSMYAEEKDWMEVAHIRSMMKEKGVE 633
Query: 387 RKARGSSVI 395
+K GSS I
Sbjct: 634 KKYPGSSWI 642
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 75/343 (21%), Positives = 138/343 (40%), Gaps = 57/343 (16%)
Query: 7 MHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSF 66
+ S PS ++L+ +K+C+ N L H L + ++K I + L+H+++ SF
Sbjct: 127 LQPPSCPSFKQTLLNRIKNCSTINEL---HGLCASMIKTNAIQDCF----LVHQFISASF 179
Query: 67 G-----FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+ F ++ N +N MIKG+ G P R
Sbjct: 180 ALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCG-----------YPFR----------- 217
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
L+ + M+ + P T +++ C+ + +V L G+ H I K +
Sbjct: 218 ---------ALQCYVHMLEESNVLPTSYTFSSLVKACTFMCAVEL--GQMVHCHIWKKGF 266
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
E + + T LVD Y+K L A VF+ M ER+ +WTA++ A G + A LFE
Sbjct: 267 ESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTAMVSALARVGDMDSARKLFEE 326
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M + N T+ ++ G V+ F + + I + M+ + +
Sbjct: 327 MP----ERNTATWNTMIDGYARLGNVESAELLFNQMPTK-----DIISWTTMITCYSQNK 377
Query: 302 FLEEAYEVIRTMRLE---PNVIIWGSFLAACKEHKQFDMAERV 341
++A + MRL P+ + + +AC ++ + +
Sbjct: 378 QYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEI 420
>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
Length = 645
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 151/393 (38%), Positives = 237/393 (60%), Gaps = 10/393 (2%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV 63
+SQM V ++F+ +LKSC+ L LH +KLG S +YV T L+ Y
Sbjct: 133 YSQMLSCGVEPNAFTFSSVLKSCS----LESGKVLHCQAIKLGLGSDLYVRTGLVDVYAR 188
Query: 64 T-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
AR+LFD++PER+ V+ TM+ YSK G + +AR FE M R+V W+ MI Y
Sbjct: 189 GGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGY 248
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+G + LKLFR M+ + + P+++T+ AVLS C LG+ L G+ H +I +
Sbjct: 249 AQSGVPNESLKLFRRMLVAKAI-PNEVTVLAVLSACGQLGA--LESGRWIHSYIENKGIQ 305
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
+N + T L+DMY+KCG L+ A +VF+ + +++V++W ++I G A G+S+ AL LFE M
Sbjct: 306 INVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEM 365
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
TG KP ++TF G+L+AC H GLV+EGR +F+++ ++Y +EP+I+HYGCMV+L G+AG
Sbjct: 366 TETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGH 425
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362
LEEAY +++ M + + ++WG+ L C+ H + E + K + + + G + L+
Sbjct: 426 LEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAK--FLVDQKLANSGTYVLLS 483
Query: 363 DLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y WEG ++R LM + K G S I
Sbjct: 484 NMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSI 516
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 102/252 (40%), Gaps = 38/252 (15%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF +M + ++L +L +C L +HS+I G +V+V T+L+
Sbjct: 258 LKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDM 317
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP----LRNVASW 115
Y S AR +FD + +++ V WN+MI GY+ G A FE M ++
Sbjct: 318 YSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITF 377
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTP-------------------------DQMT 150
+++A + G + G FR M G+ P MT
Sbjct: 378 IGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMT 437
Query: 151 IGA------VLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
I A L GC L V + +G+ F+V + N +L +MYA G +
Sbjct: 438 IAADPVLWGTLLGCCRL-HVNIKLGEEIAKFLVDQKLA-NSGTYVLLSNMYAATGNWEGV 495
Query: 205 LMVFELMEERNV 216
+ LM+E +
Sbjct: 496 AKMRTLMKEHGI 507
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 27/154 (17%)
Query: 195 YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTF 254
YA G L ++ VF +E NV S++A+I + A + M + GV+PN TF
Sbjct: 89 YAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTF 148
Query: 255 TGVLTAC----------------------VHTGLVDEGRKYFKMI--DEEYDLEPR--IQ 288
+ VL +C V TGLVD + ++ + +D P +
Sbjct: 149 SSVLKSCSLESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLV 208
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
M+ + K G L++A + M+ E +V+ W
Sbjct: 209 SLTTMLTCYSKMGELDKARSLFEGMK-ERDVVCW 241
>gi|15217517|ref|NP_174603.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75168867|sp|Q9C501.1|PPR70_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g33350
gi|12322383|gb|AAG51215.1|AC051630_12 unknown protein; 15445-13829 [Arabidopsis thaliana]
gi|12322567|gb|AAG51281.1|AC027035_4 PPR-repeat protein, putative [Arabidopsis thaliana]
gi|332193465|gb|AEE31586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 538
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 155/400 (38%), Positives = 239/400 (59%), Gaps = 10/400 (2%)
Query: 2 QLFSQMHRQSVP-SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
F M +SVP + F +LKS + ++ +H+H+ K GF +V V T+LLH
Sbjct: 111 SFFRLMVNRSVPRPNHFIYPLVLKSTPYLSSAFSTPLVHTHLFKSGFHLYVVVQTALLHS 170
Query: 61 YV--VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y V+ AR+LFDE+ ERN V+W M+ GY++SG++ A FE MP R+V SW+A+
Sbjct: 171 YASSVSHITLARQLFDEMSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAI 230
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
+AA G + + LFR MI+ + P+++T+ VLS C+ G+ L + K H F +
Sbjct: 231 LAACTQNGLFLEAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGT--LQLAKGIHAFAYR 288
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ + ++ LVD+Y KCG L+ A VF++ ++++ +W ++I A G SE+A+++
Sbjct: 289 RDLSSDVFVSNSLVDLYGKCGNLEEASSVFKMASKKSLTAWNSMINCFALHGRSEEAIAV 348
Query: 239 FEMM---QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
FE M +KP+ +TF G+L AC H GLV +GR YF ++ + +EPRI+HYGC++D
Sbjct: 349 FEEMMKLNINDIKPDHITFIGLLNACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLID 408
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
L G+AG +EA EV+ TM+++ + IWGS L ACK H D+AE +K L + P N+G
Sbjct: 409 LLGRAGRFDEALEVMSTMKMKADEAIWGSLLNACKIHGHLDLAEVAVKN-LVALNP-NNG 466
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G ++ +LY WE A R RK++ +QN K G S I
Sbjct: 467 GYVAMMANLYGEMGNWEEARRARKMIKHQNAYKPPGWSRI 506
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 125/297 (42%), Gaps = 43/297 (14%)
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAY--DPGLKLFREMISNEGLTPDQMTIGA 153
N+ AR F+R N ++A++ AY ++ FR M++ P+
Sbjct: 72 NLSYARFIFDRFSFPNTHLYAAVLTAYSSSLPLHASSAFSFFRLMVNRSVPRPNHFIYPL 131
Query: 154 VLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA-KCGFLKYALMVFELME 212
VL +L S H + K+ + L + T L+ YA + A +F+ M
Sbjct: 132 VLKSTPYLSSA--FSTPLVHTHLFKSGFHLYVVVQTALLHSYASSVSHITLARQLFDEMS 189
Query: 213 ERNVISWTALICGSAHRGYSEDALSLFE-------------------------------- 240
ERNV+SWTA++ G A G +A++LFE
Sbjct: 190 ERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFLEAVSLFRR 249
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ ++PNE+T VL+AC TG + K DL + +VDL+GK
Sbjct: 250 MINEPSIRPNEVTVVCVLSACAQTGTLQLA-KGIHAFAYRRDLSSDVFVSNSLVDLYGKC 308
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM----VKPEN 353
G LEEA V + M + ++ W S + H + + A V ++ +++ +KP++
Sbjct: 309 GNLEEASSVFK-MASKKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNINDIKPDH 364
>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Glycine max]
Length = 529
Score = 298 bits (762), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 154/425 (36%), Positives = 242/425 (56%), Gaps = 42/425 (9%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV 63
+ M R +V S+S ++K+CT + +H H+ K GF SHV+V T+L+ Y
Sbjct: 64 YMHMLRNNVMPTSYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEFY-- 121
Query: 64 TSFG----------------------------------FARKLFDELPERNAVTWNTMIK 89
++FG A +LFDE+PE+N TWN MI
Sbjct: 122 STFGDVGGSRRVFDDMPERDVFAWTTMISAHVRDGDMASAGRLFDEMPEKNVATWNAMID 181
Query: 90 GYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQM 149
GY K GN A F +MP R++ SW+ M+ Y Y + LF ++I ++G+ PD++
Sbjct: 182 GYGKLGNAESAEFLFNQMPARDIISWTTMMNCYSRNKRYKEVIALFHDVI-DKGMIPDEV 240
Query: 150 TIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFE 209
T+ V+S C+HLG++ L GK H ++V ++L+ I + L+DMYAKCG + AL+VF
Sbjct: 241 TMTTVISACAHLGALAL--GKEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVFY 298
Query: 210 LMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
++ +N+ W +I G A GY E+AL +F M+ ++PN +TF +LTAC H G ++E
Sbjct: 299 KLQTKNLFCWNCIIDGLATHGYVEEALRMFGEMERKRIRPNAVTFISILTACTHAGFIEE 358
Query: 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAAC 329
GR++F + ++Y + P+++HYGCMVDL KAG LE+A E+IR M +EPN IWG+ L C
Sbjct: 359 GRRWFMSMVQDYCIAPQVEHYGCMVDLLSKAGLLEDALEMIRNMTVEPNSFIWGALLNGC 418
Query: 330 KEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV-RK 388
K HK ++A + Q L +++P N G ++L+ ++Y +W ++R M + V ++
Sbjct: 419 KLHKNLEIAHIAV-QNLMVLEPSNSGH-YSLLVNMYAEENRWNEVAKIRTTMKDLGVEKR 476
Query: 389 ARGSS 393
GSS
Sbjct: 477 CPGSS 481
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 96/231 (41%), Gaps = 43/231 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF + + + D ++ ++ +C H L + +H +++ GF VY+ +SL+
Sbjct: 224 IALFHDVIDKGMIPDEVTMTTVISACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDM 283
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFF---ERMPLR-NVASW 115
Y S A +F +L +N WN +I G + G V EA F ER +R N ++
Sbjct: 284 YAKCGSIDMALLVFYKLQTKNLFCWNCIIDGLATHGYVEEALRMFGEMERKRIRPNAVTF 343
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
+++ A +AG + G + F M+ + + P H G
Sbjct: 344 ISILTACTHAGFIEEGRRWFMSMVQDYCIAPQ----------VEHYGC------------ 381
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYAL-MVFELMEERNVISWTALICG 225
+VD+ +K G L+ AL M+ + E N W AL+ G
Sbjct: 382 ---------------MVDLLSKAGLLEDALEMIRNMTVEPNSFIWGALLNG 417
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 73/163 (44%), Gaps = 3/163 (1%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
N I S + A F + NV ++A+I ++ + L + M+ N +
Sbjct: 14 NQFISACSNLSCINLAASAFANVQNPNVLVFNALIRGCVHCCYSEQALVHYMHMLRNN-V 72
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
P + +++ C+ L V G++ HG + K+ ++ + + T L++ Y+ G + +
Sbjct: 73 MPTSYSFSSLIKACTLL--VDSAFGEAVHGHVWKHGFDSHVFVQTTLIEFYSTFGDVGGS 130
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
VF+ M ER+V +WT +I G A LF+ M V
Sbjct: 131 RRVFDDMPERDVFAWTTMISAHVRDGDMASAGRLFDEMPEKNV 173
Score = 37.7 bits (86), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 201 LKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260
+ A F ++ NV+ + ALI G H YSE AL + M V P +F+ ++ A
Sbjct: 26 INLAASAFANVQNPNVLVFNALIRGCVHCCYSEQALVHYMHMLRNNVMPTSYSFSSLIKA 85
Query: 261 CVHTGLVDEG 270
C T LVD
Sbjct: 86 C--TLLVDSA 93
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 298 bits (762), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 147/394 (37%), Positives = 239/394 (60%), Gaps = 6/394 (1%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+ Q R + D+ + ++K+CT +L + H I++ GF S VYV SL+ Y
Sbjct: 99 HFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMY 158
Query: 62 -VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ A +F + + V+W +M+ GY KSG+V AR F++MP +N+ +WS MI+
Sbjct: 159 STLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMIS 218
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y +D ++L+ ++ +EG+ ++ + +V++ C+HLG+ L +G+ AH +I++N+
Sbjct: 219 GYAKNSFFDKAIELYF-LLQSEGVHANETVMVSVIASCAHLGA--LELGERAHDYILRNK 275
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+N + T LVDMYA+CG + A+ VF+ + R+ +SWT LI G A GY+E AL F
Sbjct: 276 MTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFS 335
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ G+ P E+TFT VL+AC H GLV+ G + F+ + +Y +EPR++HYGCMVDL G+A
Sbjct: 336 RMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDLLGRA 395
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G L EA + + M ++PN IWG+ L AC+ HK ++AER K + + KPE+ G + L
Sbjct: 396 GKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAERAGKTLIEL-KPEH-SGYYVL 453
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSV 394
+ ++Y KWE E +R++M + V K G ++
Sbjct: 454 LSNIYARTNKWENVENIRQMMKERGVVKPPGYTL 487
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 81/364 (22%), Positives = 153/364 (42%), Gaps = 76/364 (20%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS-FGFARKLFDELPE 78
L L+SCT ++L +I H+H+++ I V+ A+ L+ + + +A ++F ++
Sbjct: 19 LSFLESCTTLSHLKII---HAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQN 75
Query: 79 RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKL-FRE 137
N +N+ I+G+S G+ DP F
Sbjct: 76 PNLFIYNSFIRGFS---------------------------------GSKDPDKSFHFYV 102
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
GL PD +T ++ C+ GS L MG AHG I+++ ++ + + LV MY+
Sbjct: 103 QSKRNGLVPDNLTYPFLVKACTQKGS--LDMGIQAHGQIIRHGFDSDVYVQNSLVTMYST 160
Query: 198 CGFLKYALMV-------------------------------FELMEERNVISWTALICGS 226
G +K A V F+ M E+N+++W+ +I G
Sbjct: 161 LGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGY 220
Query: 227 AHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR 286
A + + A+ L+ ++Q+ GV NE V+ +C H G ++ G + I +
Sbjct: 221 AKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRN-KMTVN 279
Query: 287 IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQAL 346
+ +VD++ + G +++A V + + + W + +A H AE+ ++
Sbjct: 280 LILGTALVDMYARCGSIDKAIWVFDQLPGR-DALSWTTLIAGFAMH---GYAEKALEYFS 335
Query: 347 RMVK 350
RM K
Sbjct: 336 RMEK 339
>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
Length = 514
Score = 297 bits (761), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 149/387 (38%), Positives = 236/387 (60%), Gaps = 6/387 (1%)
Query: 10 QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGF 68
+ V + F++ ++K+C +L H++I+K+GF S V V T+L+H Y S
Sbjct: 4 KGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLED 63
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A +FD++ ER+ TWN MI G++++ ++ +A F M R+V SW+A+IA Y G
Sbjct: 64 AGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYG 123
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
D L +F +M G+ D+ +G+VLS C+ L + L +G+ H ++V++ + L+ +
Sbjct: 124 DESLNVFNQM-RKTGMKSDRFIMGSVLSACADLAA--LELGRQFHAYVVQSGFALDIVVG 180
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
+ LVDMYAK G ++ A VF+ M +RN +SW ++I G A G DA+ LFE M G+K
Sbjct: 181 SALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIK 240
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
PNE++F GVL+AC HTGLV+EGR YF ++ + Y + P + HY CM+DL G+AG L+EA
Sbjct: 241 PNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAEN 300
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
I M +EP+V +WG+ L AC+ H ++A+R+ + L M G++ L+ ++Y
Sbjct: 301 FINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGM--EVQIAGIYVLLSNIYAAA 358
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
+W+ A +VRKLM ++ V K G S I
Sbjct: 359 GQWDDAAKVRKLMKDRGVMKQPGYSWI 385
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 136/301 (45%), Gaps = 50/301 (16%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F+QM + + SD F + +L +C L + H+++++ GF + V ++L+
Sbjct: 127 LNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDM 186
Query: 61 YVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR----NVASW 115
Y + S A ++FD++P+RN V+WN++I G ++ G +A FE+M N S+
Sbjct: 187 YAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISF 246
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL-----SGC------------ 158
+++A + G + G F M N G+ PD ++ +GC
Sbjct: 247 VGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMP 306
Query: 159 --SHLGSVGLLMGKSA-HG------FIVKNEWELNEQIATILV---DMYAKCGFLKYALM 206
+ G L+G HG I ++ + QIA I V ++YA G A
Sbjct: 307 VEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQWDDAAK 366
Query: 207 VFELMEERNVI-----SWT-------ALICG-SAH---RGYSEDALSLFEMMQATGVKPN 250
V +LM++R V+ SW A + G ++H + E SL M+A G PN
Sbjct: 367 VRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRKMKAAGYVPN 426
Query: 251 E 251
+
Sbjct: 427 K 427
>gi|449447707|ref|XP_004141609.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Cucumis sativus]
gi|449510706|ref|XP_004163739.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Cucumis sativus]
Length = 563
Score = 297 bits (760), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 155/403 (38%), Positives = 241/403 (59%), Gaps = 16/403 (3%)
Query: 5 SQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY--V 62
+ + R ++ ++F H+L+SC +H+ +LK GF + V T+++ Y
Sbjct: 132 NMVRRGAIRPNNFIYPHVLRSCPDVLGSNATKMVHTQVLKSGFGGYPVVQTAIVDSYSRF 191
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
+ G AR++FDE+ ER V+W MI GY++ GN A + FE MP R+V +W+A+IA
Sbjct: 192 SSDIGSARQMFDEMLERTVVSWTAMISGYARLGNFDSAIELFESMPERDVPAWNALIAGC 251
Query: 123 LNAGAYDPGLKLFREMI--------SNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
G + + LF+ M+ ++ P++ T+G+ LS C H G L +GK HG
Sbjct: 252 AQNGFFCEAIWLFKRMVLLALEGNNNDRENKPNKTTLGSALSACGHTGM--LHLGKWIHG 309
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
++ K + I+ L+DMY KCG LK A VF+++ +N+ SW +LI A G+S
Sbjct: 310 YVFKTYPGQDSFISNALLDMYGKCGNLKVARRVFDMITLKNLTSWNSLINCLALHGHSGS 369
Query: 235 ALSLF-EMMQ-ATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC 292
A+ LF E++ GVKPNE+TF GVL AC H GLV++G YF+M+ +YD+EP+I+H+GC
Sbjct: 370 AIDLFAELIHCGDGVKPNEVTFVGVLNACTHGGLVEKGYSYFEMMRRDYDIEPQIEHFGC 429
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE 352
++DL G+AG EEA EV+R M +EP+ ++WGS L ACK H + D+AE +K+ + M P+
Sbjct: 430 LIDLLGRAGRFEEAMEVVRGMNIEPDEVVWGSLLNACKIHGRSDLAEYSVKKLIEM-DPK 488
Query: 353 NDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
N GG ++ ++Y KW+ +VR+L+ +N K G S I
Sbjct: 489 N-GGYRIMLANIYAEFGKWDEVRKVRRLLKEKNAYKTPGCSWI 530
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 116/279 (41%), Gaps = 45/279 (16%)
Query: 95 GNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAV 154
++C AR F+ + NV ++AMI AY + L+R M+ + P+ V
Sbjct: 90 ADLCYARYIFDNLTSPNVFLYTAMITAYASYPDPKAAFLLYRNMVRRGAIRPNNFIYPHV 149
Query: 155 LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDM-------------------- 194
L C + +G K H ++K+ + + T +VD
Sbjct: 150 LRSCPDV--LGSNATKMVHTQVLKSGFGGYPVVQTAIVDSYSRFSSDIGSARQMFDEMLE 207
Query: 195 ------------YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
YA+ G A+ +FE M ER+V +W ALI G A G+ +A+ LF+ M
Sbjct: 208 RTVVSWTAMISGYARLGNFDSAIELFESMPERDVPAWNALIAGCAQNGFFCEAIWLFKRM 267
Query: 243 QATGV---------KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293
+ KPN+ T L+AC HTG++ G+ + + Y + +
Sbjct: 268 VLLALEGNNNDRENKPNKTTLGSALSACGHTGMLHLGKWIHGYVFKTYPGQDSFIS-NAL 326
Query: 294 VDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
+D++GK G L+ A V + L+ N+ W S + H
Sbjct: 327 LDMYGKCGNLKVARRVFDMITLK-NLTSWNSLINCLALH 364
>gi|357453191|ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240903|gb|ABD32761.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355485920|gb|AES67123.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 296 bits (759), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 152/397 (38%), Positives = 245/397 (61%), Gaps = 10/397 (2%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHH---LHSHILKLGF-ISHVYVATSLLH 59
F QM V + +++ +L +C H + T I LH+H K GF ++ V V T+L+
Sbjct: 75 FIQMLEAEVEPNHITLITLLSACAHSPSKTSITFGAALHTHAFKHGFAMNDVMVGTALID 134
Query: 60 EYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y +AR +FD++ RN V+WNTMI GY K+G+V +A F+++P++NV SW+ +
Sbjct: 135 MYAKCGKLDYARLVFDQMGVRNLVSWNTMIDGYMKNGDVDDALKLFDKLPVKNVVSWTVV 194
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I ++ Y+ L+ FREM G+ PD +T+ A++S C++LG++GL G H ++K
Sbjct: 195 IGGFVKKECYEEALECFREM-QLAGVVPDFVTVIAIISACANLGALGL--GLWVHRLVMK 251
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
E+ N ++ L+DMYA+CG ++ A VF+ M +RN++SW ++I G A G ++ ALS
Sbjct: 252 KEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLVSWNSIIVGFAVNGLADKALSF 311
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F M+ G++PN +++T LTAC H GL+DEG K F I ++ PRI+HYGC+VDL+
Sbjct: 312 FRSMKKEGLEPNGVSYTSALTACSHAGLIDEGLKIFADIKRDHRNSPRIEHYGCLVDLYS 371
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG L+EA++VI+ M + PN ++ GS LAAC+ ++AE+V+K + + P D +
Sbjct: 372 RAGRLKEAWDVIKKMPMMPNEVVLGSLLAACRTQGDVELAEKVMKYQVELY-PGGDSN-Y 429
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L ++Y KW+GA +VR+ M + ++K S I
Sbjct: 430 VLFSNIYAAVGKWDGASKVRREMKERGLQKNLAFSSI 466
>gi|297846320|ref|XP_002891041.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336883|gb|EFH67300.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 586
Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 153/400 (38%), Positives = 240/400 (60%), Gaps = 10/400 (2%)
Query: 2 QLFSQMHRQSVP-SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
F M +S P + F +LKS + ++ +H+H+ K GF +V V T+LLH
Sbjct: 111 SFFRLMVNRSFPRPNHFIYPLVLKSTPYLSSAFSTPLVHTHLFKSGFHLYVVVQTALLHS 170
Query: 61 YV--VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y V+ AR+LFDE+ ERN V+W M+ GY++SG++ A FE MP R+V SW+A+
Sbjct: 171 YASSVSHITLARQLFDEMSERNVVSWTAMLSGYARSGDIFNAVALFEEMPERDVPSWNAI 230
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
+AA G + + LFR MI++ + P+++T+ VLS C+ G+ L + K H F +
Sbjct: 231 LAACTQNGLFVEAVSLFRRMINDPCIRPNEVTLVCVLSACAQTGT--LQLAKGIHAFAYR 288
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ ++ LVD+Y KCG L+ A VF++ ++++ +W ++I A G SE+A+++
Sbjct: 289 RNLSSDVFVSNSLVDLYGKCGNLEEASSVFKMSSKKSLTAWNSMINCFALHGRSEEAIAV 348
Query: 239 FEMM---QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
FE M + +KP+ +TF G+L AC H GLV +GR YF ++ + + +EPRI+HYGC++D
Sbjct: 349 FEDMMKLNSHDIKPDHITFIGLLNACTHGGLVSKGRGYFDLMKKRFGIEPRIEHYGCLID 408
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
L G+AG +EA E + TM++E + IWGS L ACK++ D+AE +K L + P N+G
Sbjct: 409 LLGRAGQFDEALETMSTMKMEADEAIWGSLLNACKKYGHLDLAEVAVKN-LVALNP-NNG 466
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G ++ +LY WE A R RK++ +QN K G S I
Sbjct: 467 GYVAMMANLYGEMGNWEEARRARKMIKHQNAYKPPGWSQI 506
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 130/328 (39%), Gaps = 70/328 (21%)
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
+ + +AR +FD N + ++ GYS S +PL +++S
Sbjct: 70 LCNLSYARFIFDRFSFPNTHLYAAVLTGYSSS------------LPLHASSAFS------ 111
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
FR M++ P+ VL +L S H + K+ +
Sbjct: 112 -----------FFRLMVNRSFPRPNHFIYPLVLKSTPYLSSA--FSTPLVHTHLFKSGFH 158
Query: 183 LNEQIATILVDMYA-KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE- 240
L + T L+ YA + A +F+ M ERNV+SWTA++ G A G +A++LFE
Sbjct: 159 LYVVVQTALLHSYASSVSHITLARQLFDEMSERNVVSWTAMLSGYARSGDIFNAVALFEE 218
Query: 241 -------------------------------MMQATGVKPNEMTFTGVLTACVHTGLVDE 269
M+ ++PNE+T VL+AC TG +
Sbjct: 219 MPERDVPSWNAILAACTQNGLFVEAVSLFRRMINDPCIRPNEVTLVCVLSACAQTGTLQL 278
Query: 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAAC 329
K +L + +VDL+GK G LEEA V + M + ++ W S +
Sbjct: 279 A-KGIHAFAYRRNLSSDVFVSNSLVDLYGKCGNLEEASSVFK-MSSKKSLTAWNSMINCF 336
Query: 330 KEHKQFDMAERVIKQALRM----VKPEN 353
H + + A V + +++ +KP++
Sbjct: 337 ALHGRSEEAIAVFEDMMKLNSHDIKPDH 364
>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 294 bits (752), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 151/395 (38%), Positives = 230/395 (58%), Gaps = 29/395 (7%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+F +M V +D+F+ +LK+C+ + V+ +H+ + K+GF ++V SL+ Y
Sbjct: 102 VFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYF 161
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+ G AR+LFDE+PER+ V+WNT++ GY K+G + A + FE+MP RNV SWS M A
Sbjct: 162 KLGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMEA- 220
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
GL D T+ ++LS C+ G +GL GK H I + +
Sbjct: 221 ---------------------GLKFDDGTVISILSACAVSGLLGL--GKRVHASIERTRF 257
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ + ++ L+DMYAKCG L+ AL +F M ++V+SW A+I G A G+ E AL LF
Sbjct: 258 KCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSR 317
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M+ G P+++TF GVL AC H G VDEG YF ++ +Y + P ++HYGCMVDL G+ G
Sbjct: 318 MKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGG 377
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE-NDGGVFTL 360
L+EA+ ++ +M LEPN IIWG+ L AC+ H +AE V R+VK E +D G ++
Sbjct: 378 RLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFD---RLVKSELSDSGNLSM 434
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y W+ +R M + +++K G S I
Sbjct: 435 LSNIYAAAGDWDNFANIRLRMKSTSIQKPSGGSSI 469
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 82/213 (38%), Gaps = 50/213 (23%)
Query: 155 LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER 214
L CS L V K H ++K + L+ ++ C + A+ VF +++
Sbjct: 24 LHRCSSLNQV-----KQIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDP 78
Query: 215 NVISWTALICGSAHRGYSED--ALSLFEMMQATGVKPNEMTFTGVLTAC----------- 261
+V+ + LI AH SE A S+F MQ +GV + T+ +L AC
Sbjct: 79 DVLLYNTLI--RAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEM 136
Query: 262 ---------------VHTGLVD---------EGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
V L+D E R+ F + E + + ++D +
Sbjct: 137 IHAQVEKMGFCLDIFVPNSLIDSYFKLGELGEARRLFDEMPERDTVS-----WNTILDGY 191
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330
KAG + A+E+ M NV+ W + A K
Sbjct: 192 VKAGEMNAAFELFEKMPAR-NVVSWSTMEAGLK 223
>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 630
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 153/402 (38%), Positives = 243/402 (60%), Gaps = 24/402 (5%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ Q+ + + F+ ILKSC+ + + H+H+LK G YVAT L+ Y
Sbjct: 115 LYVQLLSSQINPNEFTFSSILKSCSTKSGKLI----HTHVLKFGLGLDPYVATGLVDIYA 170
Query: 63 ----VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
V S A+K+FD +PER+ V+ MI Y+K GNV AR F+RM R++ SW+ M
Sbjct: 171 KGGDVVS---AQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVM 227
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I Y G L LF++++++ PD++T+ A LS CS +G+ L G+ H F+
Sbjct: 228 IDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGA--LETGRWIHVFVNS 285
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ LN ++ T L+DMY+KCG L+ A++VF +++++W A+I G A GYS+DAL L
Sbjct: 286 SRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRL 345
Query: 239 FEMMQA-TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
F+ MQ TG++P ++TF G L AC H GLV+EG + F+ + +EY ++P+I+HYGC+V L
Sbjct: 346 FDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLL 405
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQF----DMAERVIKQALRMVKPEN 353
G+AG L+ AYE+I+ M +E + ++W S L +CK H +F ++AE +I Q + +
Sbjct: 406 GRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQNI------S 459
Query: 354 DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ G++ L+ ++Y + +EG +VR LM + + K G S I
Sbjct: 460 NSGIYVLLSNIYALVGDYEGVAKVRNLMKEKGIVKEPGISTI 501
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 79/186 (42%), Gaps = 27/186 (14%)
Query: 195 YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTF 254
YA G ++++L +F + ++ +TA I ++ G + A L+ + ++ + PNE TF
Sbjct: 72 YASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTF 131
Query: 255 TGVLTAC----------------------VHTGLVDEGRKYFKMIDEE--YDLEPR--IQ 288
+ +L +C V TGLVD K ++ + +D P +
Sbjct: 132 SSILKSCSTKSGKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLV 191
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348
M+ + K G +E A + M E +++ W + +H A + ++ L
Sbjct: 192 SSTAMITCYAKQGNVEAARALFDRM-CERDIVSWNVMIDGYSQHGFPSDALMLFQKLLAD 250
Query: 349 VKPEND 354
KP+ D
Sbjct: 251 GKPKPD 256
>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Vitis vinifera]
Length = 662
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 151/405 (37%), Positives = 250/405 (61%), Gaps = 21/405 (5%)
Query: 1 MQLFSQMHRQS-VPSDSFSILHILKSCTHFNNLTVIHHLHSHIL-KLGFISHVYVATSLL 58
+ +F +M +QS + + +++ L +C L + +H ++ +LGF + + +L+
Sbjct: 218 VDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVREQLGFT--IKIGNALV 275
Query: 59 HEYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
Y AR++F+++P + + W +M+ GY G + EAR+ FER P+R+V W+A
Sbjct: 276 DMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTA 335
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MI Y+ +D + LFREM + ++PD+ T+ A+L+GC+ LG+ L GK HG+I
Sbjct: 336 MINGYVQFNRFDDAVALFREM-QIKRVSPDRFTLVALLTGCAQLGT--LEQGKWIHGYID 392
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
+N+ ++ + T L++MYAKCGF++ +L +F ++E++ SWT++ICG A G + AL
Sbjct: 393 ENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALE 452
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LF M TGVKP+++TF GVL+AC H GLV+EGRK+F+ + Y +EP+++HYGC++DL
Sbjct: 453 LFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLL 512
Query: 298 GKAGFLEEAYEVIRTMRLEPN------VIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351
G+AG L+EA E+I PN V ++G+ L+AC+ H +M ERV K R+V
Sbjct: 513 GRAGQLDEAEELIEK---SPNVNNEVIVPLYGALLSACRTHGNVEMGERVAK---RLVGI 566
Query: 352 EN-DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
E+ D V TL+ ++Y ++WE +VR+ M + V+K G S +
Sbjct: 567 ESGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSV 611
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/384 (24%), Positives = 162/384 (42%), Gaps = 69/384 (17%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF Q+ + + D+F+ + K+ + ++ ++K G YV SL+ Y
Sbjct: 119 LFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYA 178
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
V R++F+E+P+R+ V+WN +I GY K
Sbjct: 179 EVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRR------------------------- 213
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ + +FR M L P++ T+ + LS C L L +GK H + V+ +
Sbjct: 214 ------YEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKM--LELGKEIHRY-VREQL 264
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVF----------------------------ELMEE 213
+I LVDMY KCG L A +F EL E
Sbjct: 265 GFTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFER 324
Query: 214 ---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
R+V+ WTA+I G +DA++LF MQ V P+ T +LT C G +++G
Sbjct: 325 SPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQG 384
Query: 271 RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330
+ IDE + + +++++ K GF+E++ E+ ++ E + W S +
Sbjct: 385 KWIHGYIDENKIMIDAVVGTA-LIEMYAKCGFIEKSLEIFNGLK-EKDTASWTSIICGLA 442
Query: 331 EHKQFDMAERVIKQALRM-VKPEN 353
+ + A + + ++ VKP++
Sbjct: 443 MNGKTSKALELFAEMVQTGVKPDD 466
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 148/297 (49%), Gaps = 12/297 (4%)
Query: 95 GNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAV 154
GN+ A F + + + ++ +I A+ G++ + LFR++ EGL+PD T V
Sbjct: 80 GNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQL-REEGLSPDNFTYPFV 138
Query: 155 LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER 214
LG V G+ +GF+VK+ E + + L+DMYA+ G ++ VFE M +R
Sbjct: 139 FKAIGCLGEV--REGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQR 196
Query: 215 NVISWTALICGSAHRGYSEDALSLF-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKY 273
+V+SW LI G EDA+ +F M Q + ++PNE T L+AC+ +++ G++
Sbjct: 197 DVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEI 256
Query: 274 FKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHK 333
+ + E+ +I + +VD++ K G L A E+ M ++ VI W S ++
Sbjct: 257 HRYVREQLGFTIKIGN--ALVDMYCKCGHLSIAREIFNDMPIK-TVICWTSMVSGYVNCG 313
Query: 334 QFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKAR 390
Q D A + +++ P D ++T + + Y +++ A + + M + V R
Sbjct: 314 QLDEARELFERS-----PVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDR 365
>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 667
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 138/394 (35%), Positives = 245/394 (62%), Gaps = 6/394 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF +M + V +D F+++ +L + + NL + +H +I+ G V +L+ Y
Sbjct: 225 LFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYA 284
Query: 63 VTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
FA+ +FD++ +++ V+W +M+ Y+ G V A F MP++NV SW+++I
Sbjct: 285 KCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICC 344
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
+ G Y ++LF M + G+ PD T+ ++LS CS+ G + L GK AH +I N
Sbjct: 345 LVQEGQYTEAVELFHRMCIS-GVMPDDATLVSILSCCSNTGDLAL--GKQAHCYICDNII 401
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
++ + L+DMYAKCG L+ A+ +F M E+NV+SW +I A G+ E+A+ +F+
Sbjct: 402 TVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFKS 461
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
MQA+G+ P+E+TFTG+L+AC H+GLVD GR YF ++ + + P ++HY CMVDL G+ G
Sbjct: 462 MQASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMISTFRISPGVEHYACMVDLLGRGG 521
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
FL EA +I+ M ++P+V++WG+ L AC+ + ++A++++KQ L + + + G++ L+
Sbjct: 522 FLGEAMTLIQKMPVKPDVVVWGALLGACRIYGNLEIAKQIMKQLLELGR--FNSGLYVLL 579
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y+ +++W+ +++RK+M + ++K R S I
Sbjct: 580 SNMYSESQRWDDMKKIRKIMDDSGIKKCRAISFI 613
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 148/334 (44%), Gaps = 65/334 (19%)
Query: 8 HRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT-SF 66
H+ P+ ++ H+L C+ L ++H + I+ G + V LL V
Sbjct: 32 HQLKSPTHQ-TLHHLLDQCSSMKRLKLVH---AQIILHGLAAQVVTLGKLLSLCVQEGDL 87
Query: 67 GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAG 126
+A LFD++P+ N +N +I+GYS S + P+++
Sbjct: 88 RYAHLLFDQIPQPNKFMYNHLIRGYSNSND-----------PMKS--------------- 121
Query: 127 AYDPGLKLFREMISNEGLTPDQMTIGAVLSGCS-----------HLGSVGLLMGKSAHGF 175
L LFR+M+S G P+Q T VL C+ H ++ L MG A
Sbjct: 122 -----LLLFRQMVS-AGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLGMGPHA--- 172
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
V+N ++ Y C + A VF+ + +R ++SW ++I G + G+ ++A
Sbjct: 173 CVQNA----------ILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEA 222
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR-KYFKMIDEEYDLEPRIQHYGCMV 294
+ LF+ M GV+ + T +L+A +D GR + ++ +++ + + ++
Sbjct: 223 ILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTN--ALI 280
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
D++ K G L+ A V M L+ +V+ W S + A
Sbjct: 281 DMYAKCGHLQFAKHVFDQM-LDKDVVSWTSMVNA 313
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 97/227 (42%), Gaps = 39/227 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF +M V D +++ IL C++ +L + H +I V + SL+
Sbjct: 355 VELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNIITVSVTLCNSLIDM 414
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + A +F +PE+N V+WN +I + G EA + F+ M
Sbjct: 415 YAKCGALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFKSM------------ 462
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
GL PD++T +LS CSH G V MG+ ++ +
Sbjct: 463 --------------------QASGLYPDEITFTGLLSACSHSGLVD--MGRYYFDIMI-S 499
Query: 180 EWELNEQIA--TILVDMYAKCGFLKYALMVFELMEER-NVISWTALI 223
+ ++ + +VD+ + GFL A+ + + M + +V+ W AL+
Sbjct: 500 TFRISPGVEHYACMVDLLGRGGFLGEAMTLIQKMPVKPDVVVWGALL 546
>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like, partial [Cucumis sativus]
Length = 735
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 148/405 (36%), Positives = 248/405 (61%), Gaps = 21/405 (5%)
Query: 1 MQLFSQMHRQ-SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILK-LGFISHVYVATSLL 58
+ F +M ++ + D +++ L +CT NL + +H+++ K LGF + + +LL
Sbjct: 283 INTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRI--DNALL 340
Query: 59 HEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
Y AR +FDE+ +N + W +MI GY G++ EARD F++ P+R+V W+A
Sbjct: 341 DMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTA 400
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MI Y+ +D + LFREM + + PD+ T+ +L+GC+ LG+ L GK HG++
Sbjct: 401 MINGYVQFHHFDDAVALFREM-QIQKIKPDKFTVVTLLTGCAQLGA--LEQGKWIHGYLD 457
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
+N ++ + T L++MY+KCG + +L +F +E+++ SWT++ICG A G + +AL
Sbjct: 458 ENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALR 517
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LF M+ G KP+++TF GVL+AC H GLV+EGR++F + + + +EP+++HYGC++DL
Sbjct: 518 LFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLL 577
Query: 298 GKAGFLEEAYEVIRTMRLEPNVII---WGSFLAACKEHKQFDMAERVIKQALRMVKPEN- 353
G+AG L+EA E+I+ + +E I+ +G+ L+AC+ H DM ER+ K K EN
Sbjct: 578 GRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAK------KLENI 631
Query: 354 ---DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
D + TL+ ++Y ++WE A++VR+ M V+K G S+I
Sbjct: 632 ESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLI 676
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/383 (23%), Positives = 163/383 (42%), Gaps = 67/383 (17%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF Q+ + D F+ +LK+ ++ + I+K G YV
Sbjct: 184 LFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYV--------- 234
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
+N++I Y + NV A+ F+ M R+ SW+ MI+ Y
Sbjct: 235 ---------------------YNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGY 273
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+ ++ + FREM PD+ T+ + LS C+ L + L +G H + V+ E
Sbjct: 274 VRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKN--LELGDEIHNY-VRKELG 330
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRG------------ 230
+I L+DMYAKCG L A +F+ M +NVI WT++I G + G
Sbjct: 331 FTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKS 390
Query: 231 -------------------YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR 271
+ +DA++LF MQ +KP++ T +LT C G +++G+
Sbjct: 391 PVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGK 450
Query: 272 KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKE 331
+DE + + +++++ K G ++++ E+ + + + W S +
Sbjct: 451 WIHGYLDENR-ITMDVVVGTALIEMYSKCGCVDKSLEIFYELE-DKDTASWTSIICGLAM 508
Query: 332 HKQFDMAERVIKQALRM-VKPEN 353
+ + A R+ + R+ KP++
Sbjct: 509 NGKTSEALRLFSEMERVGAKPDD 531
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 142/329 (43%), Gaps = 44/329 (13%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV 63
FS ++ ++ S + L++C + L + S I ++G L+
Sbjct: 85 FSSSSASNLQTNKKSCIECLRNCKSMDQL---KQIQSQIFRIGLEGDRDTINKLMAFCAD 141
Query: 64 TSFG---FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+S G +A K+F+ + + + +N M+K Y+K G LR V
Sbjct: 142 SSLGNLRYAEKIFNYVQDPSLFVYNVMVKIYAKRG------------ILRKV-------- 181
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
L LF+++ +GL PD T VL L V G+ GFIVK
Sbjct: 182 -----------LLLFQQL-REDGLWPDGFTYPFVLKAIGCLRDV--RQGEKVRGFIVKTG 227
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+L+ + L+DMY + ++ A +F+ M R+ +SW +I G EDA++ F
Sbjct: 228 MDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFR 287
Query: 241 MMQATG-VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MQ G KP+E T L+AC ++ G + + +E RI + ++D++ K
Sbjct: 288 EMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDN--ALLDMYAK 345
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
G L A + M ++ NVI W S ++
Sbjct: 346 CGCLNIARNIFDEMSMK-NVICWTSMISG 373
>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
Length = 619
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 151/403 (37%), Positives = 236/403 (58%), Gaps = 13/403 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++++ M ++ + DSF+ +LK+C + + LH ++K G S +V TSL+
Sbjct: 93 IEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDAFVNTSLVSL 152
Query: 61 YVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFER-------MPLRNV 112
Y F A K+FD++PE+N W +I GY G EA D F R M +++
Sbjct: 153 YGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDI 212
Query: 113 ASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSA 172
SWS+MI Y + G L LF +M+ NEG PD + VL C+ LG+ L +G A
Sbjct: 213 VSWSSMIQGYASNGLPKEALDLFFKML-NEGFRPDCYAMVGVLCACARLGA--LELGNWA 269
Query: 173 HGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
+ +NE+ N + T L+DMYAKCG + A VF M +++++ W A I G A G+
Sbjct: 270 SNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHV 329
Query: 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC 292
+ A LF M+ +G++P+ TF G+L AC H GLVDEGR+YF ++ + L P I+HYGC
Sbjct: 330 KAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHYGC 389
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE 352
MVDL G+AGFL+EA++++++M +E N I+WG+ L C+ H+ + E V+KQ L ++P
Sbjct: 390 MVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQ-LIALEPS 448
Query: 353 NDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
N G + L+ ++Y+ + KWE A ++R +M + ++K G S I
Sbjct: 449 NSGN-YVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWI 490
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 91/375 (24%), Positives = 155/375 (41%), Gaps = 79/375 (21%)
Query: 29 FNNLTVIHHLHSHILKLGFISHVYVATSLLH-EYVVTSFGFARKLFDELPERNAVTWNTM 87
FN+L + H+H+ +L+LG Y+ +L + + ++ ++F + E N +NTM
Sbjct: 20 FNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTM 79
Query: 88 IKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD 147
I G + + E+ + + M EGL+PD
Sbjct: 80 IHGLVLNDSFQESIEIYHSM--------------------------------RKEGLSPD 107
Query: 148 QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMV 207
T +L C+ L + +G HG +VK E + + T LV +Y KCGF+ A V
Sbjct: 108 SFTFPFLLKACARL--LDSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKV 165
Query: 208 FELMEERNVISWTALIC--------------------------------------GSAHR 229
F+ + E+NV +WTA+I G A
Sbjct: 166 FDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASN 225
Query: 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE-EYDLEPRIQ 288
G ++AL LF M G +P+ GVL AC G ++ G ++D E+ P +
Sbjct: 226 GLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMDRNEFLGNPVLG 285
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348
++D++ K G ++ A+EV R MR + ++++W + ++ A + Q +
Sbjct: 286 T--ALIDMYAKCGRMDSAWEVFRGMR-KKDIVVWNAAISGLAMSGHVKAAFGLFGQ-MEK 341
Query: 349 VKPENDGGVFT-LIC 362
E DG F L+C
Sbjct: 342 SGIEPDGNTFVGLLC 356
>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15930
gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 137/396 (34%), Positives = 247/396 (62%), Gaps = 6/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L +M R V S ++L +L +C+ + + +H ++ + + + +L++
Sbjct: 221 IELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNA 280
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A ++F + R+ ++W +++KGY + GN+ AR +F++MP+R+ SW+ MI
Sbjct: 281 YAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMI 340
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
YL AG ++ L++FREM S G+ PD+ T+ +VL+ C+HLGS L +G+ +I KN
Sbjct: 341 DGYLRAGCFNESLEIFREMQS-AGMIPDEFTMVSVLTACAHLGS--LEIGEWIKTYIDKN 397
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + + + L+DMY KCG + A VF M++R+ +WTA++ G A+ G ++A+ +F
Sbjct: 398 KIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVF 457
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MQ ++P+++T+ GVL+AC H+G+VD+ RK+F + ++ +EP + HYGCMVD+ G+
Sbjct: 458 FQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGR 517
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG ++EAYE++R M + PN I+WG+ L A + H MAE K+ L + +P+N G V+
Sbjct: 518 AGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILEL-EPDN-GAVYA 575
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+C++Y ++W+ VR+ +++ ++K G S+I
Sbjct: 576 LLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLI 611
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/386 (24%), Positives = 169/386 (43%), Gaps = 68/386 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNN-LTVIHHLHSHILKLGFISHVYVATSLLH 59
++L+ M ++ V DS + +L L LH H++K G S++YV
Sbjct: 119 VRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQ----- 173
Query: 60 EYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
N ++K YS G + AR F+R +V SW+ MI
Sbjct: 174 -------------------------NALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMI 208
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y Y+ ++L EM N ++P +T+ VLS CS + L K H ++ +
Sbjct: 209 SGYNRMKEYEESIELLVEMERNL-VSPTSVTLLLVLSACSKVKDKDLC--KRVHEYVSEC 265
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE------ 233
+ E + ++ LV+ YA CG + A+ +F M+ R+VISWT+++ G RG +
Sbjct: 266 KTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYF 325
Query: 234 -------------------------DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
++L +F MQ+ G+ P+E T VLTAC H G ++
Sbjct: 326 DQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLE 385
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
G ++ K ++ ++ + ++D++ K G E+A +V M + + W + +
Sbjct: 386 IG-EWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMD-QRDKFTWTAMVVG 443
Query: 329 CKEHKQFDMAERVIKQALRM-VKPEN 353
+ Q A +V Q M ++P++
Sbjct: 444 LANNGQGQEAIKVFFQMQDMSIQPDD 469
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 89/356 (25%), Positives = 146/356 (41%), Gaps = 40/356 (11%)
Query: 10 QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFA 69
+S+ +D + IL C + LHS + G V + F
Sbjct: 28 ESISNDYSRFISILGVCKTTDQF---KQLHSQSITRG---------------VAPNPTFQ 69
Query: 70 RKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYD 129
+KLF V W + + G+V A F ++P +V W+ MI +
Sbjct: 70 KKLF--------VFWCSRL-----GGHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDG 116
Query: 130 PGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIAT 189
G++L+ M+ EG+TPD T +L+G G L GK H +VK N +
Sbjct: 117 EGVRLYLNML-KEGVTPDSHTFPFLLNGLKRDGG-ALACGKKLHCHVVKFGLGSNLYVQN 174
Query: 190 ILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP 249
LV MY+ CG + A VF+ + +V SW +I G E+++ L M+ V P
Sbjct: 175 ALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSP 234
Query: 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEV 309
+T VL+AC D ++ + + E EP ++ +V+ + G ++ A +
Sbjct: 235 TSVTLLLVLSACSKVKDKDLCKRVHEYV-SECKTEPSLRLENALVNAYAACGEMDIAVRI 293
Query: 310 IRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365
R+M+ +VI W S + E +A Q P D +T++ D Y
Sbjct: 294 FRSMKAR-DVISWTSIVKGYVERGNLKLARTYFDQM-----PVRDRISWTIMIDGY 343
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 147/382 (38%), Positives = 229/382 (59%), Gaps = 6/382 (1%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLF 73
D+ + ++K+C N + H +K GF YV SL+H Y V AR +F
Sbjct: 116 DNITHPFLVKACAQLENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVF 175
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
+ + V+W MI GY + G+ AR+ F+RMP RN+ +WS MI+ Y ++ ++
Sbjct: 176 QRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVE 235
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
F E + EG+ ++ + V+S C+HLG+ L MG+ AH ++++N+ LN + T +VD
Sbjct: 236 TF-EALQAEGVVANETVMVGVISSCAHLGA--LAMGEKAHEYVMRNKLSLNLILGTAVVD 292
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
MYA+CG ++ A+MVFE + E++V+ WTALI G A GY+E AL F M G P ++T
Sbjct: 293 MYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDIT 352
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
FT VLTAC H G+V+ G + F+ + ++ +EPR++HYGCMVDL G+AG L +A + + M
Sbjct: 353 FTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKM 412
Query: 314 RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEG 373
++PN IW + L AC+ HK ++ ERV K L M +PE G + L+ ++Y KW+
Sbjct: 413 PVKPNAPIWRALLGACRIHKNVEVGERVGKILLEM-QPEYSGH-YVLLSNIYARANKWKD 470
Query: 374 AERVRKLMLNQNVRKARGSSVI 395
+R++M ++ VRK G S+I
Sbjct: 471 VTVMRQMMKDKGVRKPPGYSLI 492
>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
Length = 695
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 137/396 (34%), Positives = 247/396 (62%), Gaps = 6/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L +M R V S ++L +L +C+ + + +H ++ + + + +L++
Sbjct: 221 IELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNA 280
Query: 61 YVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A ++F + R+ ++W +++KGY + GN+ AR +F++MP+R+ SW+ MI
Sbjct: 281 YAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMI 340
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
YL AG ++ L++FREM S G+ PD+ T+ +VL+ C+HLGS L +G+ +I KN
Sbjct: 341 DGYLRAGCFNESLEIFREMQS-AGMIPDEFTMVSVLTACAHLGS--LEIGEWIKTYIDKN 397
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + + + L+DMY KCG + A VF M++R+ +WTA++ G A+ G ++A+ +F
Sbjct: 398 KIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVF 457
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MQ ++P+++T+ GVL+AC H+G+VD+ RK+F + ++ +EP + HYGCMVD+ G+
Sbjct: 458 FQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGR 517
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG ++EAYE++R M + PN I+WG+ L A + H MAE K+ L + +P+N G V+
Sbjct: 518 AGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILEL-EPDN-GAVYA 575
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+C++Y ++W+ VR+ +++ ++K G S+I
Sbjct: 576 LLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLI 611
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/386 (24%), Positives = 169/386 (43%), Gaps = 68/386 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNN-LTVIHHLHSHILKLGFISHVYVATSLLH 59
++L+ M ++ V DS + +L L LH H++K G S++YV
Sbjct: 119 VRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQ----- 173
Query: 60 EYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
N ++K YS G + AR F+R +V SW+ MI
Sbjct: 174 -------------------------NALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMI 208
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y Y+ ++L EM N ++P +T+ VLS CS + L K H ++ +
Sbjct: 209 SGYNRMKEYEESIELLVEMERNL-VSPTSVTLLLVLSACSKVKDKDLC--KRVHEYVSEC 265
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE------ 233
+ E + ++ LV+ YA CG + A+ +F M+ R+VISWT+++ G RG +
Sbjct: 266 KTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYF 325
Query: 234 -------------------------DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
++L +F MQ+ G+ P+E T VLTAC H G ++
Sbjct: 326 DQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLE 385
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
G ++ K ++ ++ + ++D++ K G E+A +V M + + W + +
Sbjct: 386 IG-EWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMD-QRDKFTWTAMVVG 443
Query: 329 CKEHKQFDMAERVIKQALRM-VKPEN 353
+ Q A +V Q M ++P++
Sbjct: 444 LANNGQGQEAIKVFFQMQDMSIQPDD 469
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 89/356 (25%), Positives = 146/356 (41%), Gaps = 40/356 (11%)
Query: 10 QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFA 69
+S+ +D + IL C + LHS + G V + F
Sbjct: 28 ESISNDYSRFISILGVCKTTDQF---KQLHSQSITRG---------------VAPNPTFQ 69
Query: 70 RKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYD 129
+KLF V W + + G+V A F ++P +V W+ MI +
Sbjct: 70 KKLF--------VFWCSRL-----GGHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDG 116
Query: 130 PGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIAT 189
G++L+ M+ EG+TPD T +L+G G L GK H +VK N +
Sbjct: 117 EGVRLYLNML-KEGVTPDSHTFPFLLNGLKRDGG-ALACGKKLHCHVVKFGLGSNLYVQN 174
Query: 190 ILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP 249
LV MY+ CG + A VF+ + +V SW +I G E+++ L M+ V P
Sbjct: 175 ALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSP 234
Query: 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEV 309
+T VL+AC D ++ + + E EP ++ +V+ + G ++ A +
Sbjct: 235 TSVTLLLVLSACSKVKDKDLCKRVHEYV-SECKTEPSLRLENALVNAYAACGEMDIAVRI 293
Query: 310 IRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365
R+M+ +VI W S + E +A Q P D +T++ D Y
Sbjct: 294 FRSMKAR-DVISWTSIVKGYVERGNLKLARTYFDQM-----PVRDRISWTIMIDGY 343
>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Vitis vinifera]
Length = 518
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 154/396 (38%), Positives = 246/396 (62%), Gaps = 9/396 (2%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHF--NNLTVIHHLHSHILKLGF-ISHVYVATSLLHE 60
FS+M V + + L +L +CT F L +H+++ KLG +V V T+L+
Sbjct: 77 FSRMQIAGVRPNHITFLTLLSACTDFPLEGLRFGGSIHAYVRKLGLDTENVMVGTALVDM 136
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A +FDE+ RN+V+WNTMI G ++G V EA F++M R+ SW++MI
Sbjct: 137 YSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSERDAISWTSMI 196
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
++ G ++ L+ FREM G+ PD +TI +VL+ C++LG++GL G + F++K
Sbjct: 197 GGFVKKGCFEQALEWFREM-QLAGVEPDYVTIISVLAACANLGALGL--GLWINRFVMKQ 253
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+++ N +I+ L+DMY++CG ++ A VFE M +R+++SW ++I G A G++E+AL F
Sbjct: 254 DFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALNGHAEEALEFF 313
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+M+ G +P+ ++FTG LTAC H+GLVDEG ++F ++ + PRI+HYGC+VDL+ +
Sbjct: 314 NLMRKEGFRPDGVSFTGALTACSHSGLVDEGLQFFDIMKRTRKISPRIEHYGCLVDLYSR 373
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG LE+A VI M ++PN ++ GS LAAC+ H +AER++K L V P +D +
Sbjct: 374 AGRLEDALNVIANMPMKPNEVVLGSLLAACRTHGDVGLAERLMKY-LCEVDPGSDSN-YV 431
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y +W+GA +VRK M + K G S I
Sbjct: 432 LLSNIYAAVGRWDGASKVRKKMKALGIHKKPGFSSI 467
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 118/284 (41%), Gaps = 66/284 (23%)
Query: 77 PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFR 136
P V+W + I + ++G + EA F RM +
Sbjct: 50 PIDPIVSWTSSIALHCRNGQLPEAAAEFSRMQI--------------------------- 82
Query: 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWEL-NEQIATILVDMY 195
G+ P+ +T +LS C+ GL G S H ++ K + N + T LVDMY
Sbjct: 83 -----AGVRPNHITFLTLLSACTDFPLEGLRFGGSIHAYVRKLGLDTENVMVGTALVDMY 137
Query: 196 AKCGFLKY-------------------------------ALMVFELMEERNVISWTALIC 224
+KCG L A+++F+ M ER+ ISWT++I
Sbjct: 138 SKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSERDAISWTSMIG 197
Query: 225 GSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLE 284
G +G E AL F MQ GV+P+ +T VL AC + G + G + + ++ D +
Sbjct: 198 GFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGALGLGLWINRFVMKQ-DFK 256
Query: 285 PRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
I+ ++D++ + G + A +V M + +++ W S +
Sbjct: 257 DNIKISNSLIDMYSRCGCIRLARQVFEQMP-KRSLVSWNSMIVG 299
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275
++SWT+ I G +A + F MQ GV+PN +TF +L+AC L EG ++
Sbjct: 54 IVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPL--EGLRFGG 111
Query: 276 MID---EEYDLEPRIQHYG-CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAAC 329
I + L+ G +VD++ K G L+ A+ + M + N + W + + C
Sbjct: 112 SIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVR-NSVSWNTMIDGC 168
>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 584
Score = 291 bits (745), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 155/420 (36%), Positives = 242/420 (57%), Gaps = 37/420 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++ + M ++ V + F+ L +LK+ + +H ++K+GF V+ +L+H
Sbjct: 111 LEFYGLMRQRGVELNKFTFLFVLKAYGLRPSYQEGRIVHGKLVKVGFCYDVFTRNALIHM 170
Query: 61 Y--------------------VVT-------SFGF-----ARKLFDELPERNAVTWNTMI 88
Y VVT FG AR+LF E+PERN +WN ++
Sbjct: 171 YLKCGSITDAHLLFDEMPNHNVVTWNTMITGCFGCGDTERARRLFGEMPERNVGSWNAVV 230
Query: 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ 148
GYSK G+V AR F+ MP R+V SW +MI+AY+ G L+LF+EM+ G++ D
Sbjct: 231 GGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRAAEALELFKEMML-AGVSADS 289
Query: 149 MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVF 208
+ I ++LS C+ +G+ L MG+ H ++ +++ + + T LVDMYAKCG + A VF
Sbjct: 290 IIITSILSACAQIGA--LDMGRWIHAYMKRSKLRNDVFLDTALVDMYAKCGCIDTAFGVF 347
Query: 209 ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
M +N+ SW A++ G A G+ AL LF+ M++TGV PN++TF VL+AC H G V+
Sbjct: 348 NTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQMESTGVGPNDITFVAVLSACSHIGSVE 407
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
EG K F +D+E+++ P+++HYGCMVD+ + G + EA E+IRTM LEPNV+IWG+ L A
Sbjct: 408 EGWKKFNQMDKEFNITPKVEHYGCMVDILCRQGLINEAKEMIRTMPLEPNVVIWGALLNA 467
Query: 329 CKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRK 388
CK H ++ E V+ ++V DGG + L+ +++ +W E+ RK+M V K
Sbjct: 468 CKVHGYTNVGEDVVGYIQKLV--SEDGGCYVLLSNIFAAKSQWNEVEKTRKMMKQMGVEK 525
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 95/393 (24%), Positives = 162/393 (41%), Gaps = 65/393 (16%)
Query: 1 MQLFSQMHRQ--------SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVY 52
+ LFS RQ + ++ L L+SC +L IH + ++ G I +
Sbjct: 4 IPLFSSFWRQITTVTTKFKSKNSNYKTLSALQSCKSTEDLKKIH---AQLIITGQIKDTF 60
Query: 53 VATSLLHEYVVTS--FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR 110
+AT + Y V++ +A +F + ++ +W TMI+G+ ++ N +A +F+ M R
Sbjct: 61 IATKTVESYAVSARNIDYAFWVFVGINYPDSYSWTTMIRGFVEAKNPEKALEFYGLMRQR 120
Query: 111 ---------------------------------------NVASWSAMIAAYLNAGAYDPG 131
+V + +A+I YL G+
Sbjct: 121 GVELNKFTFLFVLKAYGLRPSYQEGRIVHGKLVKVGFCYDVFTRNALIHMYLKCGSITDA 180
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
LF EM ++ +T + M G GC L G+ E N +
Sbjct: 181 HLLFDEMPNHNVVTWNTMITGCF--GCGDTERARRLFGEMP---------ERNVGSWNAV 229
Query: 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE 251
V Y+K G + A +F+LM ER+V+SW ++I G + +AL LF+ M GV +
Sbjct: 230 VGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRAAEALELFKEMMLAGVSADS 289
Query: 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR 311
+ T +L+AC G +D GR + + L + +VD++ K G ++ A+ V
Sbjct: 290 IIITSILSACAQIGALDMGR-WIHAYMKRSKLRNDVFLDTALVDMYAKCGCIDTAFGVFN 348
Query: 312 TMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
TM N+ W + L+ H A + KQ
Sbjct: 349 TMP-RKNLCSWNAMLSGLAIHGHGFAALELFKQ 380
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 14/184 (7%)
Query: 187 IATILVDMYAKCGF-LKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
IAT V+ YA + YA VF + + SWT +I G E AL + +M+
Sbjct: 61 IATKTVESYAVSARNIDYAFWVFVGINYPDSYSWTTMIRGFVEAKNPEKALEFYGLMRQR 120
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGR-KYFKMIDEE--YDLEPRIQHYGCMVDLFGKAGF 302
GV+ N+ TF VL A EGR + K++ YD+ R ++ ++ K G
Sbjct: 121 GVELNKFTFLFVLKAYGLRPSYQEGRIVHGKLVKVGFCYDVFTR----NALIHMYLKCGS 176
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362
+ +A+ + M NV+ W + + C + A R+ + PE + G + +
Sbjct: 177 ITDAHLLFDEMP-NHNVVTWNTMITGCFGCGDTERARRLFGEM-----PERNVGSWNAVV 230
Query: 363 DLYT 366
Y+
Sbjct: 231 GGYS 234
>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Cucumis sativus]
Length = 781
Score = 291 bits (745), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 148/405 (36%), Positives = 248/405 (61%), Gaps = 21/405 (5%)
Query: 1 MQLFSQMHRQ-SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILK-LGFISHVYVATSLL 58
+ F +M ++ + D +++ L +CT NL + +H+++ K LGF + + +LL
Sbjct: 329 INTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRI--DNALL 386
Query: 59 HEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
Y AR +FDE+ +N + W +MI GY G++ EARD F++ P+R+V W+A
Sbjct: 387 DMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTA 446
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MI Y+ +D + LFREM + + PD+ T+ +L+GC+ LG+ L GK HG++
Sbjct: 447 MINGYVQFHHFDDAVALFREM-QIQRVKPDKFTVVTLLTGCAQLGA--LEQGKWIHGYLD 503
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
+N ++ + T L++MY+KCG + +L +F +E+++ SWT++ICG A G + +AL
Sbjct: 504 ENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALR 563
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LF M+ G KP+++TF GVL+AC H GLV+EGR++F + + + +EP+++HYGC++DL
Sbjct: 564 LFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLL 623
Query: 298 GKAGFLEEAYEVIRTMRLEPNVII---WGSFLAACKEHKQFDMAERVIKQALRMVKPEN- 353
G+AG L+EA E+I+ + +E I+ +G+ L+AC+ H DM ER+ K K EN
Sbjct: 624 GRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAK------KLENI 677
Query: 354 ---DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
D + TL+ ++Y ++WE A++VR+ M V+K G S+I
Sbjct: 678 ESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLI 722
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/384 (24%), Positives = 166/384 (43%), Gaps = 69/384 (17%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF Q+ + D F+ +LK+ ++ + I+K G YV SL+ Y
Sbjct: 230 LFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYY 289
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+++ A+KLFDE+ R++V+WN MI G
Sbjct: 290 ELSNVENAKKLFDEMTTRDSVSWNVMISG------------------------------- 318
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ ++ + FREM PD+ T+ + LS C+ L + L +G H + V+ E
Sbjct: 319 YVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKN--LELGDEIHNY-VRKEL 375
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRG----------- 230
+I L+DMYAKCG L A +F+ M +NVI WT++I G + G
Sbjct: 376 GFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDK 435
Query: 231 --------------------YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
+ +DA++LF MQ VKP++ T +LT C G +++G
Sbjct: 436 SPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQG 495
Query: 271 RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330
+ +DE + + +++++ K G ++++ E+ + + + W S +
Sbjct: 496 KWIHGYLDENR-ITMDVVVGTALIEMYSKCGCVDKSLEIFYELE-DKDTASWTSIICGLA 553
Query: 331 EHKQFDMAERVIKQALRM-VKPEN 353
+ + A R+ + R+ KP++
Sbjct: 554 MNGKTSEALRLFSEMERVGAKPDD 577
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 136/315 (43%), Gaps = 44/315 (13%)
Query: 18 SILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFD 74
S + L++C + L + S I ++G L+ +S G +A K+F+
Sbjct: 145 SCIECLRNCKSMDQL---KQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFN 201
Query: 75 ELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKL 134
+ + + +N M+K Y+K G LR V L L
Sbjct: 202 YVQDPSLFVYNVMVKMYAKRG------------ILRKV-------------------LLL 230
Query: 135 FREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDM 194
F+++ +GL PD T VL L V G+ GFIVK +L+ + L+DM
Sbjct: 231 FQQL-REDGLWPDGFTYPFVLKAIGCLRDVR--QGEKVRGFIVKTGMDLDNYVYNSLIDM 287
Query: 195 YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG-VKPNEMT 253
Y + ++ A +F+ M R+ +SW +I G EDA++ F MQ G KP+E T
Sbjct: 288 YYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEAT 347
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
L+AC ++ G + + +E RI + ++D++ K G L A + M
Sbjct: 348 VVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDN--ALLDMYAKCGCLNIARNIFDEM 405
Query: 314 RLEPNVIIWGSFLAA 328
++ NVI W S ++
Sbjct: 406 SMK-NVICWTSMISG 419
>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 683
Score = 291 bits (744), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 147/405 (36%), Positives = 240/405 (59%), Gaps = 11/405 (2%)
Query: 1 MQLFSQMHRQS-VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+ +F +M +S + D +++ L +CT L + +H H ++ + +LL
Sbjct: 223 INVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIH-HYVRDNVKFTPIIGNALLD 281
Query: 60 EYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y AR +F+E+P +N + W TM+ GY+ G + EAR+ FE P+R+V W+AM
Sbjct: 282 MYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAM 341
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I Y+ +D + LFREM + + PD+ + ++L+GC+ G++ GK H FI +
Sbjct: 342 INGYVQFNRFDEAVALFREMQIRK-VKPDKFIVVSLLTGCAQTGAIE--QGKWIHEFIDE 398
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
N ++ + T L++MYAKCGF++ AL +F + ++ SWT++ICG A G + AL L
Sbjct: 399 NRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMNGKTSKALEL 458
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F M+ GV+P+++TF GVL+AC H GLV+EGRK+F + EY ++P+++HYGC+VDL G
Sbjct: 459 FSKMKQAGVRPDDITFIGVLSACSHGGLVEEGRKFFNSMRMEYQIKPKVEHYGCLVDLLG 518
Query: 299 KAGFLEEAYEVIRTMRLEPNVI---IWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
+AG L EA E+I+ + E I ++GS L+AC+ + +M ERV KQ ++ +D
Sbjct: 519 RAGLLNEAEELIKKIPDENKAITVPLYGSLLSACRIYGNVEMGERVAKQLVKF--ESSDS 576
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLSV 400
V TL+ ++Y ++WE +VR+ M + V+K G S I S+
Sbjct: 577 SVHTLLANIYAFADRWEDVTKVRRKMKDLGVKKTPGCSSIEVDSI 621
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 96/359 (26%), Positives = 155/359 (43%), Gaps = 70/359 (19%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LFS++ + D+F+ + K+ + ++ L + K G YV SL+ Y
Sbjct: 124 LFSKLREDGLWPDNFTYPFVFKAIGYLGEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYA 183
Query: 63 VTSFGFARK-LFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+ K LFDE+P+R+ ++WN MI GY K
Sbjct: 184 QLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRR------------------------- 218
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
++ + +F M GL PD+ T+ + LS C+ L L +GK H + V++
Sbjct: 219 ------FEDAINVFCRMQEESGLMPDEATVVSTLSACTALKR--LELGKKIHHY-VRDNV 269
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE- 240
+ I L+DMY KCG L A VFE M +NVI WT ++ G A+ G E+A LFE
Sbjct: 270 KFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEG 329
Query: 241 ------------------------------MMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
MQ VKP++ +LT C TG +++G
Sbjct: 330 SPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQG 389
Query: 271 RKYFKMIDEEYDLEPRIQHYG-CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
+ + IDE + P G +++++ K GF+E+A E+ +R++ + W S +
Sbjct: 390 KWIHEFIDE--NRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVK-DTASWTSIICG 445
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 89/383 (23%), Positives = 161/383 (42%), Gaps = 54/383 (14%)
Query: 18 SILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG----FARKLF 73
S + LKSC ++T + +H+ I ++G + V+ + L + F +A K+F
Sbjct: 39 SCISYLKSC---KSMTHLKQIHAQIFRVGLHQDI-VSLNKLMAFCTDPFNGNLNYAEKMF 94
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
+ + +N +IK ++K GN Y L
Sbjct: 95 KYIRYPCLLIYNLIIKAFAKKGN-------------------------------YKRTLV 123
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
LF ++ +GL PD T V +LG V + G + K E + + L+D
Sbjct: 124 LFSKL-REDGLWPDNFTYPFVFKAIGYLGEVS--KAEKLRGLVTKTGLEFDTYVRNSLID 180
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF-EMMQATGVKPNEM 252
MYA+ M+F+ M +R+VISW +I G EDA+++F M + +G+ P+E
Sbjct: 181 MYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEA 240
Query: 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312
T L+AC ++ G+K + + P I + ++D++ K G L A V
Sbjct: 241 TVVSTLSACTALKRLELGKKIHHYVRDNVKFTPIIGN--ALLDMYCKCGCLSIARAVFEE 298
Query: 313 MRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWE 372
M NVI W + ++ + + A + + + P D ++T + + Y +++
Sbjct: 299 MP-SKNVICWTTMVSGYANCGELEEARELFEGS-----PIRDVVIWTAMINGYVQFNRFD 352
Query: 373 GAERVRKLMLNQNVRKARGSSVI 395
A + + M +RK + I
Sbjct: 353 EAVALFREM---QIRKVKPDKFI 372
>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
Length = 508
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 153/401 (38%), Positives = 231/401 (57%), Gaps = 15/401 (3%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L++ + + DS+S LK+ T F+++ LHS ++ G S ++V T+ + Y
Sbjct: 65 LYNNIQLAGLRPDSYSFPFALKAVTRFSSIQTGRQLHSQSIRFGLHSDLHVLTAFVQMY- 123
Query: 63 VTSFGF-----ARKLFD--ELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASW 115
+SFG ARK+FD + + WN M+ GY+K G++C ARD FERMP RNV SW
Sbjct: 124 -SSFGSGCICDARKMFDGMSMSTGDVALWNAMLNGYAKHGDLCNARDLFERMPQRNVISW 182
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
+A+I Y A + LFR M E + PD++ + L+ C+ LG++ L G+ +
Sbjct: 183 TALITGYAQANRPHDAIALFRRM-QLENVEPDEIAMLVALTACARLGALEL--GEWIRHY 239
Query: 176 IVK-NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
I + N + L+DMYAK G +K AL VFE M + +I+WT +I G A G +
Sbjct: 240 IDRLGLLTTNIPLNNALIDMYAKSGDIKSALQVFENMNHKTIITWTTMIAGLALHGLGTE 299
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
AL +F M+ VKPN++TF +L+AC H GLV GR YF + Y +EP+I+HYGCM+
Sbjct: 300 ALEMFSRMERARVKPNDITFIAILSACSHVGLVQTGRWYFNRMISRYGIEPKIEHYGCMI 359
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
DL G+AG L+EA ++ M EPN +IWGS LAAC H ++ E ++ L + +P+N
Sbjct: 360 DLLGRAGHLKEAQTLLAQMPFEPNAVIWGSLLAACNTHGDPELGELALQHLLEL-EPDNS 418
Query: 355 GGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G + L+ ++Y +W + VRK+M + V+K G S+I
Sbjct: 419 GN-YALLSNIYASRGRWNESRVVRKVMWDAGVKKMPGGSLI 458
>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
Length = 492
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 146/349 (41%), Positives = 223/349 (63%), Gaps = 6/349 (1%)
Query: 48 ISHVYVATSLLHEYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFER 106
+ V++ +L YV S ARK+FD +P R+ V+WNTMI GY+ G V AR+ F+
Sbjct: 20 LRDVFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIFDG 79
Query: 107 MPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGL 166
R+ SWS+MI+AY + L+L+REM + + PD +T+ +V+S CS LG+ L
Sbjct: 80 TEDRDAFSWSSMISAYAKSRRSKEALELWREMHA-ASIIPDCITLVSVVSACSDLGA--L 136
Query: 167 LMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGS 226
+G H F+ N EL+ ++ T L+DMYAKCG ++ A VF+ M E++V +W+++I G
Sbjct: 137 AVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGL 196
Query: 227 AHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR 286
A+ G ++LSLF M + G+KPN +TF GVL AC H GLV EG+KYF+ ++E + +EP
Sbjct: 197 ANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPT 256
Query: 287 IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQAL 346
++HYGCMVDL G++G +EEA ++IR+M EP+ IIW + L AC+ HK ++AE + + L
Sbjct: 257 VEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEEAMAK-L 315
Query: 347 RMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
R++ P DG + L+ ++Y WEG +RK + N+++ G S I
Sbjct: 316 RVLDPLGDGH-YVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGRSSI 363
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 97/228 (42%), Gaps = 41/228 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L+ +MH S+ D +++ ++ +C+ L V +H + + + T+L+
Sbjct: 105 LELWREMHAASIIPDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDM 164
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A+++FD +PE++ TW++MI G +
Sbjct: 165 YAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLA--------------------------- 197
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
N G L LF +MIS EG+ P+ +T VL C+H+G L+ + F N
Sbjct: 198 ----NHGLGHESLSLFSKMIS-EGMKPNGVTFVGVLIACTHVG----LVSEGKKYFRSMN 248
Query: 180 EWELNEQIAT---ILVDMYAKCGFLKYALMVFELME-ERNVISWTALI 223
E E +VD+ + G ++ A + M E + I W AL+
Sbjct: 249 EVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALL 296
>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 624
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 152/398 (38%), Positives = 244/398 (61%), Gaps = 6/398 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
++S+M +SV + F+ ++++C + +H+H+LK GF + + +L+H YV
Sbjct: 107 MYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYV 166
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
S AR++FD +P+R+ V+W ++I GYS+ G V +AR+ FE MP RN SW+AMIAA
Sbjct: 167 NFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAA 226
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ + LF M E + D+ ++LS C+ LG+ L GK HG+I K+
Sbjct: 227 YVQSNRLHEAFALFDRM-RLENVVLDKFVAASMLSACTGLGA--LEQGKWIHGYIEKSGI 283
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
EL+ ++AT ++DMY KCG L+ A VF + ++ + SW +I G A G E A+ LF+
Sbjct: 284 ELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKE 343
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M+ V P+ +TF VL+AC H+GLV+EG+ YF+ + E L+P ++H+GCMVDL G+AG
Sbjct: 344 MEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAG 403
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
LEEA ++I M + P+ + G+ + AC+ H ++ E++ K+ + + +P N G + L+
Sbjct: 404 LLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIEL-EPHNS-GRYVLL 461
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLS 399
+LY +WE +VRKLM ++ V+KA G S+I S S
Sbjct: 462 ANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESES 499
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 132/298 (44%), Gaps = 35/298 (11%)
Query: 92 SKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTI 151
SKSG++ A + F+++P + ++ + YL + ++ M+ ++ ++P++ T
Sbjct: 65 SKSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRML-HKSVSPNKFTY 123
Query: 152 GAVLSGC---------SHLGSVGLLMGKSAHGFIVKN------EWELNEQIATILVDM-- 194
++ C + + L G A GF + N ++ EQ + +M
Sbjct: 124 PPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQ 183
Query: 195 ------------YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
Y++ GF+ A VFELM ERN +SW A+I +A +LF+ M
Sbjct: 184 RDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRM 243
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
+ V ++ +L+AC G +++G K+ E+ +E + ++D++ K G
Sbjct: 244 RLENVVLDKFVAASMLSACTGLGALEQG-KWIHGYIEKSGIELDSKLATTVIDMYCKCGC 302
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALR-MVKPENDGGVFT 359
LE+A EV + + + W + H + + A + K+ R MV P DG F
Sbjct: 303 LEKASEVFNELP-QKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAP--DGITFV 357
>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 290 bits (742), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 158/458 (34%), Positives = 239/458 (52%), Gaps = 70/458 (15%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+F +M V +D+F+ +LK+C+ + V+ +H+ + K+GF ++V SL+ Y
Sbjct: 102 VFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYF 161
Query: 63 ----------------------------------VTSFGFARKLFDELPERNAVTWNTMI 88
V G AR+LFDE+PER+ V+WNT++
Sbjct: 162 KCGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVGELGEARRLFDEMPERDTVSWNTIL 221
Query: 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM---------- 138
GY K+G + A + FE+MP RNV SWS M+ Y AG D LF +M
Sbjct: 222 DGYVKAGEMNAAFELFEKMPARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTI 281
Query: 139 --------------------ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
+ GL D T+ ++LS C+ G +GL GK H I +
Sbjct: 282 MISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILSACAVSGLLGL--GKRVHASIER 339
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
++ + ++ L+DMYAKCG L+ AL +F M ++V+SW A+I G A G+ E AL L
Sbjct: 340 TRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQL 399
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F M+ G P+++TF GVL AC H G VDEG YF ++ +Y + P ++HYGCMVDL G
Sbjct: 400 FSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLG 459
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE-NDGGV 357
+ G L+EA+ ++ +M LEPN IIWG+ L AC+ H +AE V R+VK E +D G
Sbjct: 460 RGGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFD---RLVKSELSDSGN 516
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+++ ++Y W+ +R M + +++K G S I
Sbjct: 517 LSMLSNIYAAAGDWDNFANIRLRMKSTSIQKPSGGSSI 554
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 99/245 (40%), Gaps = 36/245 (14%)
Query: 155 LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER 214
L CS L V K H ++K + L+ ++ C + A+ VF +++
Sbjct: 24 LHRCSSLNQV-----KQIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDP 78
Query: 215 NVISWTALICGSAHRGYSED--ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK 272
+V+ + LI AH SE A S+F MQ +GV + T+ +L AC G+
Sbjct: 79 DVLLYNTLI--RAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKAC-------SGKV 129
Query: 273 YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE-----------AYEVIRTMRLEPNVII 321
+ ++++ + +++ G +D+F ++ A +V M E + +
Sbjct: 130 WVRVVEM---IHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVM-AERDTVS 185
Query: 322 WGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLM 381
W S + + + A R+ + PE D + I D Y + A + + M
Sbjct: 186 WNSMIGGLVKVGELGEARRLFDEM-----PERDTVSWNTILDGYVKAGEMNAAFELFEKM 240
Query: 382 LNQNV 386
+NV
Sbjct: 241 PARNV 245
>gi|357141789|ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Brachypodium distachyon]
Length = 555
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 142/328 (43%), Positives = 211/328 (64%), Gaps = 6/328 (1%)
Query: 68 FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
ARK+FDE+P RN V+WNTM++GY+ +G + +AR+ F+RMP ++V SW+ MI+ Y A
Sbjct: 228 LARKMFDEMPVRNLVSWNTMVRGYAVNGEMNDARELFDRMPEKDVVSWTCMISGYAQARC 287
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ- 186
Y L+LFR M S + P+++T+ +VLS C+HL L G+ AH FI K++ L+ +
Sbjct: 288 YTETLELFRAMQSESNVLPNEVTMVSVLSACAHL--TALEEGRWAHAFIDKHKMVLDSEF 345
Query: 187 -IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
+ L+DMY+KCG A+ +F ++++NV +W ALI G A G ++ +FE M+ +
Sbjct: 346 NLGAALIDMYSKCGRTDLAVKIFHSLDQKNVSAWNALITGLAVNGDVRSSIDVFEQMRRS 405
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305
G KPN +TF GVLTAC H GLVDEGR+ F+ + ++P +HYGCMVD+ G+AG LEE
Sbjct: 406 GEKPNGITFVGVLTACAHGGLVDEGRRCFQSMASTCGVQPEAKHYGCMVDMLGRAGLLEE 465
Query: 306 AYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365
A E+IR+M + P+V+I G+ L AC+ HK+ D+A RV + L + ++ G LI D+Y
Sbjct: 466 AEELIRSMPMVPDVMILGALLGACRMHKRVDVAARVQNEILGLSTQQS--GCHVLISDIY 523
Query: 366 TMNEKWEGAERVRKLMLNQNVRKARGSS 393
KW A R ++ + K RGSS
Sbjct: 524 AAAGKWADALYARGVLQKFGISKLRGSS 551
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 103/329 (31%), Positives = 165/329 (50%), Gaps = 17/329 (5%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVI-HHLHSHILKLGFISHVYVATSLLHEYV 62
FS + R D F+ +LKS + + +H+ ++ G + V+V +LL Y
Sbjct: 66 FSSILRSGDTPDRFTFPSLLKSASRLASFPRTGAQVHAQAVRRGLLVDVFVVNTLLAMYA 125
Query: 63 V-TSFGFARKLFDELPE-RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
R++FD + VTWNTM+ GY K G + EAR FE+MP RN SWSAM+
Sbjct: 126 AFRDTRSMREVFDSCAGVADLVTWNTMLGGYVKCGEIGEARRVFEQMPQRNGVSWSAMVG 185
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
AY AG D ++F EM + + ++ ++++G + G + L K V+N
Sbjct: 186 AYAGAGELDVAREMFDEM---PAIGRNVVSWNSMITGFARHGLLPLAR-KMFDEMPVRNL 241
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAH-RGYSEDALSLF 239
N +V YA G + A +F+ M E++V+SWT +I G A R Y+E L LF
Sbjct: 242 VSWN-----TMVRGYAVNGEMNDARELFDRMPEKDVVSWTCMISGYAQARCYTE-TLELF 295
Query: 240 EMMQA-TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE-EYDLEPRIQHYGCMVDLF 297
MQ+ + V PNE+T VL+AC H ++EGR ID+ + L+ ++D++
Sbjct: 296 RAMQSESNVLPNEVTMVSVLSACAHLTALEEGRWAHAFIDKHKMVLDSEFNLGAALIDMY 355
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
K G + A ++ ++ + NV W + +
Sbjct: 356 SKCGRTDLAVKIFHSLD-QKNVSAWNALI 383
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 148/396 (37%), Positives = 235/396 (59%), Gaps = 6/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ + +M + + D +++ ++ SC +L + H +I + G V +A +L+
Sbjct: 193 LNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDM 252
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y+ + ARKLFD + + V+W TM+ GY++SG + A F+ MP ++V W+AMI
Sbjct: 253 YMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMI 312
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y++A L LF EM + + PD++T+ + LS CS LG+ L +G H +I K+
Sbjct: 313 GGYVHANRGKEALALFNEMQA-MNINPDEVTMVSCLSACSQLGA--LDVGIWIHHYIEKH 369
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
E LN + T L+DMYAKCG + A+ VF+ + RN ++WTA+I G A G + A++ F
Sbjct: 370 ELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYF 429
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M V P+E+TF G+L+AC H GLV+EGRKYF + +++L P+++HY CMVDL G+
Sbjct: 430 SEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGR 489
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG LEEA E+I++M +E + ++WG+ AC+ H M ER + L+M +D G++
Sbjct: 490 AGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQM--DPHDSGIYV 547
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y E W+ A + RKLM + V K G S I
Sbjct: 548 LLANMYGEAEMWKEAGKARKLMRQRGVEKTPGCSSI 583
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 90/350 (25%), Positives = 161/350 (46%), Gaps = 68/350 (19%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLF 73
D+++ + K+C + + + + H+L LGF S ++V+ +++H V ARK+F
Sbjct: 106 DNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMF 165
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
D+ R+ V+WN+MI GY + G EA +F+ M +
Sbjct: 166 DKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKV------------------------ 201
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
EG+ PD++T+ V+S C+ L + L G+ +H +I +N +L +A L+D
Sbjct: 202 --------EGIKPDEVTMIGVVSSCAQLEDLDL--GRESHCYIEENGLKLTVPLANALMD 251
Query: 194 MYAKC-------------------------------GFLKYALMVFELMEERNVISWTAL 222
MY KC G L A +F+ M +++V+ W A+
Sbjct: 252 MYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAM 311
Query: 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD 282
I G H ++AL+LF MQA + P+E+T L+AC G +D G I E+++
Sbjct: 312 IGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYI-EKHE 370
Query: 283 LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
L + ++D++ K G + +A +V + + N + W + ++ H
Sbjct: 371 LSLNVALGTALIDMYAKCGKITKAIQVFQELPGR-NSLTWTAIISGLALH 419
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 120/242 (49%), Gaps = 6/242 (2%)
Query: 103 FFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLG 162
F R P N SW+ I +L++ + L++ ++ +G PD T + C+ L
Sbjct: 64 FNTRNP--NTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLS 121
Query: 163 SVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTAL 222
+ MG G ++ ++ + ++ ++ + CG L A +F+ R+++SW ++
Sbjct: 122 LI--RMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSM 179
Query: 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD 282
I G RG++ +AL+ + M+ G+KP+E+T GV+++C +D GR+ I EE
Sbjct: 180 INGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYI-EENG 238
Query: 283 LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVI 342
L+ + ++D++ K G LE A ++ +M ++ W + + + DMA ++
Sbjct: 239 LKLTVPLANALMDMYMKCGNLESARKLFDSMT-NKTMVSWTTMVVGYAQSGLLDMAWKLF 297
Query: 343 KQ 344
+
Sbjct: 298 DE 299
>gi|347954500|gb|AEP33750.1| chloroplast biogenesis 19, partial [Lepidium sativum]
Length = 494
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 152/400 (38%), Positives = 246/400 (61%), Gaps = 16/400 (4%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHF--NNLTVIHHLHSHILKLGFI-SHVYVATSLLHE 60
FS M + + + + +L +C +F + + LH + KLG SHV V T++L
Sbjct: 56 FSDMRLAGIEPNHITFISLLSACGNFPSGSEALSDLLHGYACKLGLDRSHVMVGTAILGM 115
Query: 61 YVVTSFGFARK---LFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
Y + G RK +FD + ++N+VTWNTMI GY ++G V A F+ MP R++ SW+A
Sbjct: 116 Y--SKRGHVRKARLVFDYMEDKNSVTWNTMIDGYMRNGQVDNAVKVFDEMPERDLISWTA 173
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MI ++ G ++ L FREM G+ PD + I A L+ C++LG+ L G AH ++V
Sbjct: 174 MITGFVKKGFHEEALAWFREM-QISGVNPDYVAIIAALAACTNLGA--LSFGLWAHRYVV 230
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
++ N +++ L+D+Y +CG +++A VF+ ME+R V+SW ++I G A G + ++L
Sbjct: 231 SQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDTMEKRTVVSWNSVIVGFAANGNANESLV 290
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
F MQ G KP+ +TFTG LTAC H GLV+EG +YF+M+ +Y + PRI+H+GC+VDL+
Sbjct: 291 YFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGFQYFQMMKTDYRISPRIEHFGCLVDLY 350
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFD-MAERVIKQALRM-VKPENDG 355
+AG LE+A +V+ +M ++PN ++ GS LAAC+ H +AER++K + VK ++
Sbjct: 351 SRAGRLEDAIKVVESMPMKPNEVVIGSLLAACRNHGNHTILAERLMKHISDLDVKGHSN- 409
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++ ++Y + KWEGA ++R+ M ++K G S I
Sbjct: 410 --YVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGYSSI 447
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 14/144 (9%)
Query: 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275
++SWT+ I + +A F M+ G++PN +TF +L+AC G G +
Sbjct: 33 IVSWTSRITLLSRDDRLAEAAREFSDMRLAGIEPNHITFISLLSAC---GNFPSGSEALS 89
Query: 276 MIDEEYDLEPRIQHYGCMV-----DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330
+ Y + + MV ++ K G + +A V M + N + W + +
Sbjct: 90 DLLHGYACKLGLDRSHVMVGTAILGMYSKRGHVRKARLVFDYME-DKNSVTWNTMIDGYM 148
Query: 331 EHKQFDMAERVIKQALRMVKPEND 354
+ Q D A +V + PE D
Sbjct: 149 RNGQVDNAVKVFDEM-----PERD 167
>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 808
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 153/399 (38%), Positives = 238/399 (59%), Gaps = 6/399 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+F +M+ + D ++ +L +C H + + +H ++++G S+V + +L+H Y
Sbjct: 291 MFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYS 350
Query: 63 VTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+ A+KLF+ + ++WN+MI G K G+V +AR F+ MP +++ SWSA+I+
Sbjct: 351 GSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISG 410
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y + L LF EM + + PD+ + +V+S C+HL + L GK H +I KN
Sbjct: 411 YAQHDCFSETLALFHEMQLGQ-IRPDETILVSVISACTHLAA--LDQGKWVHAYIRKNGL 467
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
++N + T L+DMY KCG ++ AL VF MEE+ V SW ALI G A G E +L +F
Sbjct: 468 KVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSE 527
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M+ GV PNE+TF GVL AC H GLVDEGR +F + E++ +EP ++HYGCMVDL G+AG
Sbjct: 528 MKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAG 587
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L EA ++I +M + P+V WG+ L ACK+H +M ERV ++ + + +P++D G L+
Sbjct: 588 LLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIEL-QPDHD-GFHVLL 645
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLSV 400
+++ WE VR +M Q V K G S+I + V
Sbjct: 646 SNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGV 684
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 111/391 (28%), Positives = 187/391 (47%), Gaps = 76/391 (19%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCT----HFNNLTVIHHLHSHILKLGFISHVYVATSLL 58
L+ M + +V D+++ ++++C F +H H+LK+GF S VYV +L+
Sbjct: 128 LYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGG----KEIHDHVLKVGFDSDVYVQNTLI 183
Query: 59 HEYVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNV----- 112
+ Y V + ARKLFDE P ++V+WN+++ GY K G+V EA+ F++MP RN+
Sbjct: 184 NMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNS 243
Query: 113 --------------------------ASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
SWSA+I+ Y G Y+ L +F EM +N G+
Sbjct: 244 MIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNAN-GMRL 302
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA---------- 196
D++ + +VLS C+HL V GK HG +++ E + L+ MY+
Sbjct: 303 DEVVVVSVLSACAHLSIVK--TGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQK 360
Query: 197 ---------------------KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
KCG ++ A +F++M E++++SW+A+I G A +
Sbjct: 361 LFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSET 420
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
L+LF MQ ++P+E V++AC H +D+G K+ + L+ + ++D
Sbjct: 421 LALFHEMQLGQIRPDETILVSVISACTHLAALDQG-KWVHAYIRKNGLKVNVILGTTLLD 479
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
++ K G +E A EV M E V W + +
Sbjct: 480 MYMKCGCVENALEVFNGME-EKGVSSWNALI 509
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 89/410 (21%), Positives = 162/410 (39%), Gaps = 114/410 (27%)
Query: 13 PSDSFSILHI-LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSF---GF 68
P+ + SIL L +C +NL + + S ++ GFIS + A+ LL + F +
Sbjct: 37 PTITLSILETHLHNC---HNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDY 93
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
+ ++FD + N WNTM++ AY+ + +
Sbjct: 94 SLQIFDRIENSNGFMWNTMMR-------------------------------AYIQSNSA 122
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLM--GKSAHGFIVKNEWELNEQ 186
+ L L++ M+ N + PD T V+ C +V LL GK H ++K ++ +
Sbjct: 123 EKALLLYKLMVKNN-VGPDNYTYPLVVQAC----AVRLLEFGGKEIHDHVLKVGFDSDVY 177
Query: 187 IATILVDMYAKCGFLK-------------------------------YALMVFELMEERN 215
+ L++MYA CG ++ A ++F+ M +RN
Sbjct: 178 VQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQMPQRN 237
Query: 216 V-------------------------------ISWTALICGSAHRGYSEDALSLFEMMQA 244
+ +SW+ALI G G E+AL +F M A
Sbjct: 238 IVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNA 297
Query: 245 TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLE 304
G++ +E+ VL+AC H +V G+ ++ +E + ++ ++ +G +
Sbjct: 298 NGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVI-RMGIESYVNLQNALIHMYSGSGEIM 356
Query: 305 EAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
+A ++ + I W S ++ C + + A +AL V PE D
Sbjct: 357 DAQKLFNGSH-NLDQISWNSMISGCMKCGSVEKA-----RALFDVMPEKD 400
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 35/235 (14%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF +M + D ++ ++ +CTH L +H++I K G +V + T+LL
Sbjct: 421 LALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDM 480
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y+ A ++F+ + E+ +WN +I G + +G V + D F M
Sbjct: 481 YMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEM------------ 528
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
N G+ P+++T VL C H+G V A I K+
Sbjct: 529 --------------------KNNGVIPNEITFMGVLGACRHMGLVDEGRCHFA-SMIEKH 567
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSE 233
E N + +VD+ + G L A + E M +V +W AL+ G +E
Sbjct: 568 GIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTE 622
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 138/395 (34%), Positives = 243/395 (61%), Gaps = 6/395 (1%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+LF M + V + +++ +L +C+ +L +HS++ S++ + +++ Y
Sbjct: 205 RLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMY 264
Query: 62 V-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
A +F + R+ ++W T++ G++ G + AR++F++MP ++ SW+AMI
Sbjct: 265 ADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMID 324
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y+ + + L+LFR M + + PD+ T+ +VL+ C+HLG++ L G+ +I +N+
Sbjct: 325 GYIRSNRFKEALELFRNMQAT-NVKPDEFTMVSVLTACAHLGALEL--GEWIRTYIDRNK 381
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ + + L+DMY KCG + A +F M +R+ +WTA+I G A G+ E AL +F
Sbjct: 382 IKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFS 441
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M + P+E+T+ GVL+AC HTGLVD+GRKYF + ++ +EP I HYGC+VDL +A
Sbjct: 442 NMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARA 501
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G L+EAYEVI M ++ N I+WG+ LA C+ +++ DMAE V+KQ L + +P+N G V+ L
Sbjct: 502 GRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILEL-EPDN-GAVYVL 559
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+C++Y ++W +R++M+++ ++K G S+I
Sbjct: 560 LCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLI 594
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 106/385 (27%), Positives = 166/385 (43%), Gaps = 78/385 (20%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+ +M R+ V D ++ + K T L LH H+LK G +V+V T+L+
Sbjct: 103 VSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQM 162
Query: 61 YVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y++ AR +FD P+ + +TWN +I Y+K G E+R F M
Sbjct: 163 YLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVM------------ 210
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
++ + P +T+ VLS CS L L GK H ++
Sbjct: 211 --------------------EDKQVLPTTVTLVLVLSACSKLKD--LRTGKKVHSYVKNC 248
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICG-------SAHRGYS 232
+ E N + ++DMYA CG + AL +F M R++ISWT ++ G R Y
Sbjct: 249 KVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYF 308
Query: 233 E------------------------DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
+ +AL LF MQAT VKP+E T VLTAC H G ++
Sbjct: 309 DKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALE 368
Query: 269 EG---RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSF 325
G R Y + DL R ++D++ K G +++A + R M + + W +
Sbjct: 369 LGEWIRTYIDRNKIKNDLFVR----NALIDMYFKCGDVDKAESIFREMS-QRDKFTWTAM 423
Query: 326 LA--ACKEH--KQFDMAERVIKQAL 346
+ A H K DM ++K ++
Sbjct: 424 IVGLAVNGHGEKALDMFSNMLKASI 448
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 88/383 (22%), Positives = 164/383 (42%), Gaps = 51/383 (13%)
Query: 10 QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL-----HEYVVT 64
+S + ++ +L++C + L +H +K G ++ + ++ HEY
Sbjct: 12 KSFSPPTHPLISLLETCESMDQL---QQVHCQAIKKGLNANPVLQNRVMTFCCTHEY--G 66
Query: 65 SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLN 124
F +AR+LFDE+ P N+ W+ MI Y
Sbjct: 67 DFQYARRLFDEI-------------------------------PEPNLFIWNTMIRGYSR 95
Query: 125 AGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN 184
G+ L+ EM+ G+ PD+ T + G + + L G+ HG ++K+ + N
Sbjct: 96 LDFPQLGVSLYLEML-RRGVKPDRYTFPFLFKGFTR--DIALEYGRQLHGHVLKHGLQYN 152
Query: 185 EQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQA 244
+ T LV MY CG L A VF++ + +VI+W +I G E++ LF +M+
Sbjct: 153 VFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMED 212
Query: 245 TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLE 304
V P +T VL+AC + G+K + + +E + M+D++ G ++
Sbjct: 213 KQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYV-KNCKVESNLVLENAMIDMYADCGEMD 271
Query: 305 EAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDL 364
A + R+M ++I W + ++ + D+A + PE D +T + D
Sbjct: 272 SALGIFRSMN-NRDIISWTTIVSGFTNLGEIDVARNYFDKM-----PEKDYVSWTAMIDG 325
Query: 365 YTMNEKWEGAERVRKLMLNQNVR 387
Y + +++ A + + M NV+
Sbjct: 326 YIRSNRFKEALELFRNMQATNVK 348
>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Glycine max]
Length = 628
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 148/402 (36%), Positives = 238/402 (59%), Gaps = 15/402 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +SQM + ++F++ +LK+CT L +HSH +K G SH+YV+T L+
Sbjct: 106 LSYYSQMLTHPIQPNAFTLSSLLKACT----LHPARAVHSHAIKFGLSSHLYVSTGLVDA 161
Query: 61 YVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A+KLFD +PER+ V++ M+ Y+K G + EAR FE M +++V W+ MI
Sbjct: 162 YARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMI 221
Query: 120 AAYLNAGAYDPGLKLFREMISNEG------LTPDQMTIGAVLSGCSHLGSVGLLMGKSAH 173
Y G + L FR+M+ G + P+++T+ AVLS C +G+ L GK H
Sbjct: 222 DGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGA--LECGKWVH 279
Query: 174 GFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE 233
++ N ++N ++ T LVDMY KCG L+ A VF++ME ++V++W ++I G G+S+
Sbjct: 280 SYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSD 339
Query: 234 DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293
+AL LF M GVKP+++TF VLTAC H GLV +G + F + + Y +EP+++HYGCM
Sbjct: 340 EALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCM 399
Query: 294 VDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353
V+L G+AG ++EAY+++R+M +EP+ ++WG+ L AC+ H + E + + + +
Sbjct: 400 VNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGEEIAE--ILVSNGLA 457
Query: 354 DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G + L+ ++Y W G +VR +M V K G S I
Sbjct: 458 SSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSI 499
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 65/164 (39%), Gaps = 27/164 (16%)
Query: 195 YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTF 254
YA G L +++ +F NV WT +I AH ALS + M ++PN T
Sbjct: 65 YASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTL 124
Query: 255 TGVLTAC----------------------VHTGLVDEGRKYFKMIDEE--YDLEPR--IQ 288
+ +L AC V TGLVD + + + +D P +
Sbjct: 125 SSLLKACTLHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLV 184
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
Y M+ + K G L EA + M ++ +V+ W + +H
Sbjct: 185 SYTAMLTCYAKHGMLPEARVLFEGMGMK-DVVCWNVMIDGYAQH 227
>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 146/396 (36%), Positives = 239/396 (60%), Gaps = 5/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF +M Q+V + +++ +L +C ++ +HS+I + + ++ ++L
Sbjct: 222 LELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDM 281
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y S A++LFD++PE++ V+W TM+ GY+K G A+ F+ MP +++A+W+A+I
Sbjct: 282 YTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALI 341
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+AY G L+LF E+ ++ PD++T+ + LS C+ LG++ L G H +I K
Sbjct: 342 SAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDL--GGWIHVYIKKQ 399
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+LN + T L+DMY KCG L+ ALMVF +E ++V W+A+I G A G+ +DA++LF
Sbjct: 400 GMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALF 459
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MQ VKPN +TFT +L AC H GLV+EGR +F ++ Y + P ++HY CMVD+ G+
Sbjct: 460 SKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGR 519
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG LEEA E+I M + P +WG+ L AC H+ +AE+ Q + + +P N G +
Sbjct: 520 AGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIEL-EPGNHGA-YV 577
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y KW+ +RKLM + ++K G S I
Sbjct: 578 LLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSI 613
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/384 (25%), Positives = 166/384 (43%), Gaps = 48/384 (12%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSF---GFARKLFDEL 76
L ++ C+ L IH + +L+ G + A+ L+ ++ F +A+++FD++
Sbjct: 39 LSLIDQCSETKQLKQIH---AQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQI 95
Query: 77 PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFR 136
P N TWNT+I+ Y+ S N ++ L +F
Sbjct: 96 PHPNLYTWNTLIRAYASSSNPHQS-------------------------------LLIFL 124
Query: 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA 196
M+ PD+ T ++ S L L GK+ HG ++K + I L+ YA
Sbjct: 125 RMLHQSPDFPDKFTFPFLIKAASELEE--LFTGKAFHGMVIKVLLGSDVFILNSLIHFYA 182
Query: 197 KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTG 256
KCG L VF + R+V+SW ++I G E+AL LF+ M+ VKPN +T G
Sbjct: 183 KCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVG 242
Query: 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE 316
VL+AC + GR I E + + M+D++ K G +E+A + M E
Sbjct: 243 VLSACAKKSDFEFGRWVHSYI-ERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMP-E 300
Query: 317 PNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM-NEKWEGAE 375
+++ W + L + ++D A+ + P D + + Y + E E
Sbjct: 301 KDIVSWTTMLVGYAKIGEYDAAQGIFD-----AMPNQDIAAWNALISAYEQCGKPKEALE 355
Query: 376 RVRKLMLNQNVRKARGSSVISSLS 399
+L L++ K +++S+LS
Sbjct: 356 LFHELQLSKTA-KPDEVTLVSTLS 378
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/359 (22%), Positives = 153/359 (42%), Gaps = 69/359 (19%)
Query: 7 MHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTS 65
+H+ D F+ ++K+ + L H ++K+ S V++ SL+H Y
Sbjct: 127 LHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGE 186
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
G ++F +P R+ V+WN+MI + + G EA + F+ M +NV
Sbjct: 187 LGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNV------------- 233
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
P+ +T+ VLS C+ G+ H +I +N +
Sbjct: 234 -------------------KPNGITMVGVLSACAKKSDFEF--GRWVHSYIERNRIGESL 272
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSA------------------ 227
++ ++DMY KCG ++ A +F+ M E++++SWT ++ G A
Sbjct: 273 TLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQ 332
Query: 228 -------------HRGYSEDALSLFEMMQ-ATGVKPNEMTFTGVLTACVHTGLVDEGRKY 273
G ++AL LF +Q + KP+E+T L+AC G +D G +
Sbjct: 333 DIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLG-GW 391
Query: 274 FKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
+ ++ ++ ++D++ K G L++A V ++ + +V +W + +A H
Sbjct: 392 IHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERK-DVFVWSAMIAGLAMH 449
>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
Length = 640
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 165/410 (40%), Positives = 245/410 (59%), Gaps = 21/410 (5%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCT----HFNNLTVIHHLHSHILKLGFISHVYVATSLL 58
L+ M + +V D+++ ++++C F +H H+LK+GF S VYV +L+
Sbjct: 116 LYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGG----KEIHDHVLKVGFDSDVYVQNTLI 171
Query: 59 HEYVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGN---VCEARDFFERMPLRNVAS 114
+ Y V + ARKLFDE P ++V+WN+++ GY K G+ V EA F M +++ S
Sbjct: 172 NMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVS 231
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
WSA+I+ Y G Y+ L +F EM +N G+ D++ + +VLS C+HL V GK HG
Sbjct: 232 WSALISGYEQNGMYEEALVMFIEMNAN-GMRLDEVVVVSVLSACAHLSIVK--TGKMIHG 288
Query: 175 FIVKNEWE--LNEQIATILV--DMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRG 230
+++ E +N Q A I + DMY KCG ++ AL VF MEE+ V SW ALI G A G
Sbjct: 289 LVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNG 348
Query: 231 YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHY 290
E +L +F M+ GV PNE+TF GVL AC H GLVDEGR +F + E++ +EP ++HY
Sbjct: 349 LVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHY 408
Query: 291 GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVK 350
GCMVDL G+AG L EA ++I +M + P+V WG+ L ACK+H +M ERV ++ + + +
Sbjct: 409 GCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIEL-Q 467
Query: 351 PENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLSV 400
P++D G L+ +++ WE VR +M Q V K G S+I + V
Sbjct: 468 PDHD-GFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGV 516
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 90/359 (25%), Positives = 154/359 (42%), Gaps = 87/359 (24%)
Query: 13 PSDSFSILHI-LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSF---GF 68
P+ + SIL L +C +NL + + S ++ GFIS + A+ LL + F +
Sbjct: 25 PTITLSILETHLHNC---HNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDY 81
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
+ ++FD + N WNTM++ AY+ + +
Sbjct: 82 SLQIFDRIENSNGFMWNTMMR-------------------------------AYIQSNSA 110
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLM--GKSAHGFIVKNEWELNEQ 186
+ L L++ M+ N + PD T V+ C +V LL GK H ++K ++ +
Sbjct: 111 EKALLLYKLMVKN-NVGPDNYTYPLVVQAC----AVRLLEFGGKEIHDHVLKVGFDSDVY 165
Query: 187 IATILVDMYAKCGFLKYALMVFE----------------------------------LME 212
+ L++MYA CG ++ A +F+ M+
Sbjct: 166 VQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMD 225
Query: 213 ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK 272
E++++SW+ALI G G E+AL +F M A G++ +E+ VL+AC H +V G+
Sbjct: 226 EKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKM 285
Query: 273 ----YFKMIDEEY-DLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
+M E Y +L+ + H D++ K G +E A EV M E V W + +
Sbjct: 286 IHGLVIRMGIESYVNLQNALIHM--YSDMYMKCGCVENALEVFNGME-EKGVSSWNALI 341
Score = 41.2 bits (95), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 90/200 (45%), Gaps = 7/200 (3%)
Query: 201 LKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260
L Y+L +F+ +E N W ++ +E AL L+++M V P+ T+ V+ A
Sbjct: 79 LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQA 138
Query: 261 CVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNV 319
C L G++ + ++ +D + +Q+ +++++ G + +A ++ + +V
Sbjct: 139 CAVRLLEFGGKEIHDHVLKVGFDSDVYVQN--TLINMYAVCGNMRDARKLFDESPVLDSV 196
Query: 320 IIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRK 379
W S LA K+ DM + + L E D ++ + Y N +E A V
Sbjct: 197 -SWNSILAGYV--KKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEA-LVMF 252
Query: 380 LMLNQNVRKARGSSVISSLS 399
+ +N N + V+S LS
Sbjct: 253 IEMNANGMRLDEVVVVSVLS 272
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 138/395 (34%), Positives = 243/395 (61%), Gaps = 6/395 (1%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+LF M + V + +++ +L +C+ +L +HS++ S++ + +++ Y
Sbjct: 226 RLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMY 285
Query: 62 V-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
A +F + R+ ++W T++ G++ G + AR++F++MP ++ SW+AMI
Sbjct: 286 ADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMID 345
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y+ + + L+LFR M + + PD+ T+ +VL+ C+HLG++ L G+ +I +N+
Sbjct: 346 GYIRSNRFKEALELFRNMQAT-NVKPDEFTMVSVLTACAHLGALEL--GEWIRTYIDRNK 402
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ + + L+DMY KCG + A +F M +R+ +WTA+I G A G+ E AL +F
Sbjct: 403 IKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFS 462
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M + P+E+T+ GVL+AC HTGLVD+GRKYF + ++ +EP I HYGC+VDL +A
Sbjct: 463 NMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARA 522
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G L+EAYEVI M ++ N I+WG+ LA C+ +++ DMAE V+KQ L + +P+N G V+ L
Sbjct: 523 GRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILEL-EPDN-GAVYVL 580
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+C++Y ++W +R++M+++ ++K G S+I
Sbjct: 581 LCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLI 615
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 106/385 (27%), Positives = 166/385 (43%), Gaps = 78/385 (20%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+ +M R+ V D ++ + K T L LH H+LK G +V+V T+L+
Sbjct: 124 VSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQM 183
Query: 61 YVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y++ AR +FD P+ + +TWN +I Y+K G E+R F M
Sbjct: 184 YLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVM------------ 231
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
++ + P +T+ VLS CS L L GK H ++
Sbjct: 232 --------------------EDKQVLPTTVTLVLVLSACSKLKD--LRTGKKVHSYVKNC 269
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICG-------SAHRGYS 232
+ E N + ++DMYA CG + AL +F M R++ISWT ++ G R Y
Sbjct: 270 KVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYF 329
Query: 233 E------------------------DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
+ +AL LF MQAT VKP+E T VLTAC H G ++
Sbjct: 330 DKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALE 389
Query: 269 EG---RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSF 325
G R Y + DL R ++D++ K G +++A + R M + + W +
Sbjct: 390 LGEWIRTYIDRNKIKNDLFVR----NALIDMYFKCGDVDKAESIFREMS-QRDKFTWTAM 444
Query: 326 LA--ACKEH--KQFDMAERVIKQAL 346
+ A H K DM ++K ++
Sbjct: 445 IVGLAVNGHGEKALDMFSNMLKASI 469
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 95/383 (24%), Positives = 172/383 (44%), Gaps = 51/383 (13%)
Query: 10 QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL-----HEYVVT 64
+S + ++ +L++C + L +H +K G ++ + ++ HEY
Sbjct: 33 KSFSPPTHPLISLLETCESMDQL---QQVHCQAIKKGLNANPVLQNRVMTFCCTHEY--G 87
Query: 65 SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLN 124
F +AR+LFDE+PE N WNTMI+GYS+ DF +
Sbjct: 88 DFQYARRLFDEIPEPNLFIWNTMIRGYSRL-------DFPQL------------------ 122
Query: 125 AGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN 184
G+ L+ EM+ G+ PD+ T + G + + L G+ HG ++K+ + N
Sbjct: 123 ------GVSLYLEML-RRGVKPDRYTFPFLFKGFTR--DIALEYGRQLHGHVLKHGLQYN 173
Query: 185 EQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQA 244
+ T LV MY CG L A VF++ + +VI+W +I G E++ LF +M+
Sbjct: 174 VFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMED 233
Query: 245 TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLE 304
V P +T VL+AC + G+K + + +E + M+D++ G ++
Sbjct: 234 KQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYV-KNCKVESNLVLENAMIDMYADCGEMD 292
Query: 305 EAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDL 364
A + R+M ++I W + ++ + D+A + PE D +T + D
Sbjct: 293 SALGIFRSMN-NRDIISWTTIVSGFTNLGEIDVARNYFDKM-----PEKDYVSWTAMIDG 346
Query: 365 YTMNEKWEGAERVRKLMLNQNVR 387
Y + +++ A + + M NV+
Sbjct: 347 YIRSNRFKEALELFRNMQATNVK 369
>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1288
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 145/394 (36%), Positives = 237/394 (60%), Gaps = 6/394 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+F +M V D+ +++ ++ +CT V+ + +I + VY+ +L+ Y
Sbjct: 883 VFEEMRMADVKGDAVTMVKVVLACTVLGEWGVVDAMIEYIEENKVEVDVYLGNTLIDMYG 942
Query: 63 VTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
S AR++FD + +RN V+WN MI GY K+GN+ AR F+ MP R+V SW++MI++
Sbjct: 943 RRSMVDLARRVFDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISS 1002
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y AG + ++LF+EM+ + + PD++T+ +VLS C+H+G+ L +G++ H +I K +
Sbjct: 1003 YSQAGQFGKAVRLFQEMMVTK-VKPDEITVASVLSACAHIGA--LDVGEAVHEYIRKYDV 1059
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ + L+DMY KCG ++ L VFE M +R+ +SWT++I G A G ++ AL+LF +
Sbjct: 1060 NADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVSWTSVIAGLAVNGSADSALNLFSL 1119
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M GV+P TF GVL AC H G+VD+G +YF+ ++ Y L P ++HYGC+VDL ++G
Sbjct: 1120 MLREGVRPTHGTFVGVLLACAHAGVVDKGLEYFESMERVYGLTPEMKHYGCVVDLLSRSG 1179
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L AYE I+ M ++P+V++W L+A + H +AE K+ L P N G + L
Sbjct: 1180 NLGRAYEFIKRMPMDPDVVVWRILLSASQVHGNLHLAEIATKKLLE-TDPSNSGN-YILS 1237
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ Y + +WE ++R+LM NV K SS +
Sbjct: 1238 SNTYAGSNRWEDVIKMRRLMEESNVHKPSASSSV 1271
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/381 (27%), Positives = 177/381 (46%), Gaps = 70/381 (18%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV- 62
++ M+ Q++ ++ + +LK+C +N++ +H+ +LKLGF S ++V+ +L+H Y
Sbjct: 784 YNLMYSQALFGNNLTYPFLLKACARISNVSCTT-VHARVLKLGFDSDLFVSNALIHGYAG 842
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
GFARK+FDE+ ER+ V+WN++I GY + E FE M + +V
Sbjct: 843 FCELGFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKG-------- 894
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
D +T+ V+ C+ LG G++ + +I +N+ E
Sbjct: 895 ------------------------DAVTMVKVVLACTVLGEWGVV--DAMIEYIEENKVE 928
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRG------------ 230
++ + L+DMY + + A VF+ M +RN++SW A+I G G
Sbjct: 929 VDVYLGNTLIDMYGRRSMVDLARRVFDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDM 988
Query: 231 --------------YSE-----DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR 271
YS+ A+ LF+ M T VKP+E+T VL+AC H G +D G
Sbjct: 989 PHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSACAHIGALDVGE 1048
Query: 272 KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKE 331
+ I +YD+ I ++D++ K G +E+ V M + + + W S +A
Sbjct: 1049 AVHEYI-RKYDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMG-KRDSVSWTSVIAGLAV 1106
Query: 332 HKQFDMAERVIKQALRM-VKP 351
+ D A + LR V+P
Sbjct: 1107 NGSADSALNLFSLMLREGVRP 1127
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 128/260 (49%), Gaps = 15/260 (5%)
Query: 72 LFDELPERNAVTWNTMIKGYSKSG-NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDP 130
+ EL + ++ ++K Y+ S N+ +A + F ++P ++ W+ MI +
Sbjct: 720 MIKELLPTDPISIFNLLKSYALSPTNILKANELFRQIPRPTLSHWNIMIRGWSQTNQPIE 779
Query: 131 GLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATI 190
++ + M S + L + +T +L C+ + +V + H ++K ++ + ++
Sbjct: 780 AIRNYNLMYS-QALFGNNLTYPFLLKACARISNVSC---TTVHARVLKLGFDSDLFVSNA 835
Query: 191 LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAH-RGYSEDALSLFEMMQATGVKP 249
L+ YA L +A VF+ M ER+++SW +LICG R YSE L +FE M+ VK
Sbjct: 836 LIHGYAGFCELGFARKVFDEMSERDLVSWNSLICGYGRCRRYSE-VLVVFEEMRMADVKG 894
Query: 250 NEMTFTGVLTACV---HTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
+ +T V+ AC G+VD +Y EE +E + ++D++G+ ++ A
Sbjct: 895 DAVTMVKVVLACTVLGEWGVVDAMIEYI----EENKVEVDVYLGNTLIDMYGRRSMVDLA 950
Query: 307 YEVIRTMRLEPNVIIWGSFL 326
V MR + N++ W + +
Sbjct: 951 RRVFDRMR-DRNMVSWNAMI 969
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 122/261 (46%), Gaps = 18/261 (6%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF +M V D ++ +L +C H L V +H +I K + +YV +L+
Sbjct: 1013 VRLFQEMMVTKVKPDEITVASVLSACAHIGALDVGEAVHEYIRKYDVNADIYVGNALIDM 1072
Query: 61 YVVTSFGFARK---LFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNV----A 113
Y G K +F+E+ +R++V+W ++I G + +G+ A + F M V
Sbjct: 1073 YC--KCGAVEKGLSVFEEMGKRDSVSWTSVIAGLAVNGSADSALNLFSLMLREGVRPTHG 1130
Query: 114 SWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH 173
++ ++ A +AG D GL+ F M GLTP+ G V+ S G++G A+
Sbjct: 1131 TFVGVLLACAHAGVVDKGLEYFESMERVYGLTPEMKHYGCVVDLLSRSGNLG-----RAY 1185
Query: 174 GFIVKNEWELNEQIATILVDMYAKCGFLKYA-LMVFELMEERNVISWTALICGSAHRGYS 232
FI + + + + IL+ G L A + +L+E S ++ + + G +
Sbjct: 1186 EFIKRMPMDPDVVVWRILLSASQVHGNLHLAEIATKKLLETDPSNSGNYILSSNTYAGSN 1245
Query: 233 --EDALSLFEMMQATGV-KPN 250
ED + + +M+ + V KP+
Sbjct: 1246 RWEDVIKMRRLMEESNVHKPS 1266
>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
Length = 1130
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 150/399 (37%), Positives = 235/399 (58%), Gaps = 8/399 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F +M V D + +L+S + L + +H+ IL+ G +V TSL+
Sbjct: 49 ISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISM 108
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + GFAR++FDE+P+ + +WN++I ++G V AR+ F MP RNV SWS MI
Sbjct: 109 YSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQAGLVDMARNLFAVMPERNVISWSCMI 168
Query: 120 AAYLNAGAYDPGLKLFREM--ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
Y+ G Y L LFREM + + P++ T+ VL+ C LG+ L GK AH +I
Sbjct: 169 NGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGA--LEHGKWAHAYID 226
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFE-LMEERNVISWTALICGSAHRGYSEDAL 236
K ++ + T L+DMYAKCG ++ A VF L ++V++W+A+I G A G +E+ +
Sbjct: 227 KCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECV 286
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
LF M GV+PN +TF V ACVH GLV EG+ Y + + E+Y + P IQHYGCMVDL
Sbjct: 287 GLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDL 346
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
+G+AG ++EA+ V+++M +EP+V++WG+ L+ + H + E +K+ + + +P N G
Sbjct: 347 YGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIEL-EPTNSGA 405
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ ++Y +WE VR LM ++K G S+I
Sbjct: 406 -YVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLI 443
>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 542
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 154/430 (35%), Positives = 248/430 (57%), Gaps = 38/430 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH- 59
+ L++QM + V D F+ +LK+CT + + + +H +LK GF S+ +V +L++
Sbjct: 98 VSLYTQMENRGVRPDKFTFSFVLKACTKLSWVKLGFGIHGKVLKSGFQSNTFVRNTLIYF 157
Query: 60 -----------------------EYVVTSFGFARK--------LFDELPERNAVTWNTMI 88
+ + G+AR+ LFDE+P ++ V+WN MI
Sbjct: 158 HANCGDLATARALFDASAKREVVPWSALTAGYARRGKLDVARQLFDEMPMKDLVSWNVMI 217
Query: 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ 148
Y+K G + +AR F+ +P ++V +W+AMIA Y+ + L++F M + G PD
Sbjct: 218 TAYAKHGEMEKARKLFDEVPKKDVVTWNAMIAGYVLSRLNKEALEMFDAM-RDLGQRPDD 276
Query: 149 MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE-WELNEQIATILVDMYAKCGFLKYALMV 207
+T+ ++LS + LG L +GK H I +L+ ++ L+DMYAKCG + AL V
Sbjct: 277 VTMLSILSASADLGD--LEIGKKIHRSIFDMCCGDLSVLLSNALIDMYAKCGSIGNALEV 334
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
F+ M +++ SW ++I G A G++E++++LF+ M +KPNE+TF VL AC H G V
Sbjct: 335 FQGMRKKDTSSWNSIIGGLALHGHAEESINLFQEMLRLKMKPNEITFVAVLVACSHAGKV 394
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
EGR YF ++ + +EP I+HYGCMVD+ G+AG L EA++ I TM +EPN IIW + L
Sbjct: 395 REGRMYFNLMKNVFKIEPNIKHYGCMVDILGRAGLLIEAFDFIDTMEIEPNAIIWRTLLG 454
Query: 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVR 387
AC+ H ++ R +Q L+M K E+ G + L+ ++Y +W+G ++VRKLM + V+
Sbjct: 455 ACRVHGDVELGRRANEQLLKMRKDES--GDYVLLSNIYASQGEWDGVQKVRKLMDDGGVK 512
Query: 388 KARGSSVISS 397
K G S+I S
Sbjct: 513 KKVGHSLIDS 522
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/352 (22%), Positives = 150/352 (42%), Gaps = 57/352 (16%)
Query: 7 MHRQSVPSDSFSILH---ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV 63
M R+ +SF+ + + CT+F +L LH+ ++ G S TS+L E +
Sbjct: 1 MIRKRTNDNSFNRFQQSSLWQKCTNFRSL---KQLHAFLIVNGLNS----TTSVLRELIF 53
Query: 64 TS-------FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
S +A +LF ++ + + WNTMI+G +++ A + +M
Sbjct: 54 VSAIVVSGTMDYAHQLFAQISQPDIFMWNTMIRGSAQTLKPATAVSLYTQM--------- 104
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
N G+ PD+ T VL C+ L V L G HG +
Sbjct: 105 -----------------------ENRGVRPDKFTFSFVLKACTKLSWVKL--GFGIHGKV 139
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
+K+ ++ N + L+ +A CG L A +F+ +R V+ W+AL G A RG + A
Sbjct: 140 LKSGFQSNTFVRNTLIYFHANCGDLATARALFDASAKREVVPWSALTAGYARRGKLDVAR 199
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
LF+ M + +++ ++TA G +++ RK F + ++ + G ++
Sbjct: 200 QLFDEMPMKDL----VSWNVMITAYAKHGEMEKARKLFDEVPKKDVVTWNAMIAGYVLSR 255
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348
K E ++ +R + P+ + S L+A + ++ +++ + M
Sbjct: 256 LNKEAL--EMFDAMRDLGQRPDDVTMLSILSASADLGDLEIGKKIHRSIFDM 305
>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 663
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 141/399 (35%), Positives = 239/399 (59%), Gaps = 7/399 (1%)
Query: 1 MQLFSQM--HRQSVPSDSFSILHILKSCTHFNNLTVI-HHLHSHILKLGFISHVYVATSL 57
+ LF QM H + +D ++ + +C+ L ++H ++K G+ S ++V SL
Sbjct: 139 LYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSL 198
Query: 58 LHEYVVTSFGF-ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
++ Y + S A+++FDE+P+R+ +TW +++KGY+ G + AR+ F+ MP RN SW+
Sbjct: 199 VNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWA 258
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
M+A Y+ Y+ L+ F +M+ ++ + P++ + ++LS C+HLG+ L GK H +I
Sbjct: 259 VMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGA--LDQGKWIHVYI 316
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
KN L+ I+T L+DMYAKCG + A VF+ + +R++++WT++I G + G + L
Sbjct: 317 DKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECL 376
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
F M A G KP+++T GVL C H+GLV+EG F + + + P+++HYGC++DL
Sbjct: 377 WTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDL 436
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
G+AG LE A+E I++M +EP+V+ W + L+AC+ H D+ ER+I + P + GG
Sbjct: 437 LGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDVDLGERIINHIAELC-PGSHGG 495
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ +LY +WE +VRK M + G S I
Sbjct: 496 GYVLLSNLYASMGQWESVTKVRKAMSQRGSEGCPGCSWI 534
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 155/358 (43%), Gaps = 75/358 (20%)
Query: 11 SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFA 69
S+PS S + + +LK +LT I +H+ ++ G + + L+H Y+ + FA
Sbjct: 51 SLPSHS-TFVQLLKK---RPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFA 106
Query: 70 RKLFDELPE-RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
R +FD+ P + WN MI+ YSK+ + E+
Sbjct: 107 RIVFDQFPSLPPTIIWNLMIQAYSKTPSSQES---------------------------- 138
Query: 129 DPGLKLFREMISN-EGLTPDQMTIGAVLSGCS-HLGSVGLLMGKSAHGFIVKNEWELNEQ 186
L LF +M+++ + D+ T V + CS H G G++ HG +VK+ +E +
Sbjct: 139 ---LYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRG--YGENVHGMVVKDGYESDIF 193
Query: 187 IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
+ LV+MY+ + A VF+ M +R+VI+WT+++ G A RG A LF+MM
Sbjct: 194 VGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRN 253
Query: 247 --------------------------------VKPNEMTFTGVLTACVHTGLVDEGRKYF 274
VKPNE +L+AC H G +D+G+
Sbjct: 254 DVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIH 313
Query: 275 KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
ID+ L ++D++ K G ++ A V + + +++ W S ++ H
Sbjct: 314 VYIDKNRILLSS-NISTALIDMYAKCGRIDCARRVFDGLH-KRDLLTWTSMISGLSMH 369
>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 532
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 154/396 (38%), Positives = 238/396 (60%), Gaps = 8/396 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+ M + ++++ +L++CT +N V H+ ++KLG+ S+ +V L+H
Sbjct: 95 LSLYKNMLQTGFLPNNYTFSFVLRACT--DNSPVGLASHAQVIKLGWESYDFVLNGLIHL 152
Query: 61 YVV-TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y +S ARKLFD R+ +TW +I GY KSG+V AR+ F++MP RN SWSAMI
Sbjct: 153 YANWSSVEAARKLFDVSTCRDVITWTALINGYVKSGHVEFARELFDQMPERNEVSWSAMI 212
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y++ G + L+LF ++ GL P+ I L+ CS+LGS L G+ H ++ +N
Sbjct: 213 TGYVHMGMFREALELFNDL-QLTGLRPNHAGIVGALTACSYLGS--LDHGRWIHAYVDRN 269
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
EL+ + T LVDMYAKCG ++ A VFE M +++ ++T+LI G A+ G S DA+ LF
Sbjct: 270 GTELDRVLGTALVDMYAKCGCIEIACSVFEKMPDKDAFAFTSLISGLANHGQSADAIQLF 329
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MQ+ V PNE+TF VL+AC GLVDEG + F + Y +EP +QHYGCMVDL G+
Sbjct: 330 GRMQSEKVIPNEVTFICVLSACSRMGLVDEGLRIFNCMSVVYGIEPGVQHYGCMVDLLGR 389
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG LEEA ++R M +EP+ + G+ L +C+ H ++ + ++ + + + GGV
Sbjct: 390 AGLLEEAKRLVREMPMEPDSYVLGALLNSCRVHGDVELGKETVESLVE--RGLDHGGVHV 447
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y + +W+ +VRK M + V+K G S I
Sbjct: 448 LLSNMYASSNQWDWVVKVRKEMGAKKVKKVPGCSSI 483
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 73/181 (40%), Gaps = 14/181 (7%)
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYA--KCGFLKYALMVFELMEERNVISWTALICGSA 227
K H ++ + L+ A ++ ++A + +A +F + R W +I
Sbjct: 27 KQMHSHLIVSASRLDPFAAGKIISLFAVSSNADISHAYKLFLSLPHRTTFIWNTIIRIFV 86
Query: 228 HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR--KYFKMIDEEYDLEP 285
+ + ALSL++ M TG PN TF+ VL AC V + K+ E YD
Sbjct: 87 EKNENATALSLYKNMLQTGFLPNNYTFSFVLRACTDNSPVGLASHAQVIKLGWESYDFV- 145
Query: 286 RIQHYGCMVDLFGKAGFLEEAYEV--IRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIK 343
++ L+ +E A ++ + T R +VI W + + + + A +
Sbjct: 146 ----LNGLIHLYANWSSVEAARKLFDVSTCR---DVITWTALINGYVKSGHVEFARELFD 198
Query: 344 Q 344
Q
Sbjct: 199 Q 199
>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 681
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 148/395 (37%), Positives = 231/395 (58%), Gaps = 6/395 (1%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
L+ +M +V D +++ ++ + NL + LH I ++G V +A +L+ Y
Sbjct: 242 DLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMY 301
Query: 62 V-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ + A+ LF+ + ++ V+W TM+ GY+K G + A F MP ++V W+A+I
Sbjct: 302 IKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIG 361
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
++ A L LF EM ++ + PD++T+ LS CS LG+ L +G H ++ K+
Sbjct: 362 GFVQAKRSKEALALFHEMQAS-SVAPDKITVVNCLSACSQLGA--LDVGIWMHHYVDKHN 418
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+N + T LVDMYAKCG +K A+ VFE M RN ++WTA+ICG A G A+S F
Sbjct: 419 LTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFS 478
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M + G+ P+E+TF GVL+AC H GLVD+GR YF + +Y + P+++HY C+VDL G+A
Sbjct: 479 EMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRA 538
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
GFLEEA E+IR+M EP+ ++WG+ + H M ER + L + +DGG++ L
Sbjct: 539 GFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLEL--DPHDGGIYVL 596
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y WE A +VRK+M + V K G S I
Sbjct: 597 LANMYGDANMWEQARKVRKMMEERGVEKTPGCSSI 631
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 167/342 (48%), Gaps = 23/342 (6%)
Query: 3 LFSQMHRQ-SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
L+ M R+ S D+++ + K C F+ + + H+++LGF S ++V +++H
Sbjct: 141 LYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIH-- 198
Query: 62 VVTSFG---FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
V+ S G ARKLFDE R+ V+WN++I GY + G EA D + +M NV
Sbjct: 199 VLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVT 258
Query: 119 IAAYLNAGAYDPGLKLFREM---ISNEGLTPDQMTIGAVLS---GCSHLGSVGLLMGKSA 172
+ ++A A L L R++ I GL A++ C ++ + +L
Sbjct: 259 MIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMT 318
Query: 173 HGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
+V W T +V YAK G L+ A+ +F M E++V+ W ALI G S
Sbjct: 319 KKTVVS--W-------TTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRS 369
Query: 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC 292
++AL+LF MQA+ V P+++T L+AC G +D G +D +++L +
Sbjct: 370 KEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVD-KHNLTMNVALGTA 428
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
+VD++ K G +++A +V M N + W + + H Q
Sbjct: 429 LVDMYAKCGNIKKAIQVFEEMPGR-NSLTWTAIICGLALHGQ 469
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/345 (20%), Positives = 146/345 (42%), Gaps = 52/345 (15%)
Query: 16 SFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT---SFGFARKL 72
S +L +L++CT ++ + +H+ ++ G IS + + L+ ++ + + K+
Sbjct: 54 SNPLLSLLEACT---SMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKI 110
Query: 73 FDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGL 132
+ N +WN I+GY +S N P+ V
Sbjct: 111 LNNAANLNVFSWNMAIRGYVESEN-----------PINAVL------------------- 140
Query: 133 KLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH---GFIVKNEWELNEQIAT 189
L+R M+ PD T + C+ G + +A+ G +++ ++ + +
Sbjct: 141 -LYRNMLRKGSAIPDNYTYPLLFKVCA-----GFSLSWTANEILGHVIQLGFDSDLFVHN 194
Query: 190 ILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP 249
++ + CG L A +F+ R+++SW ++I G G +++A L+ M V P
Sbjct: 195 AIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMP 254
Query: 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEV 309
+E+T GV++A + GRK + I EE L + ++D++ K +E A +
Sbjct: 255 DEVTMIGVVSASAQLENLALGRKLHQSI-EEMGLNLTVPLANALMDMYIKCKNIEAAKIL 313
Query: 310 IRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
M + V+ W + + + +F + E ++ M PE D
Sbjct: 314 FENMT-KKTVVSWTTMVIG---YAKFGLLESAVRLFNEM--PEKD 352
>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 535
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 146/397 (36%), Positives = 239/397 (60%), Gaps = 7/397 (1%)
Query: 1 MQLFSQM-HRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+ +F+QM +S D F+ ++KSC + +H+H+ K G +H +L+
Sbjct: 90 ITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQQVHAHVCKFGPKTHAITENALID 149
Query: 60 EYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y A ++++E+ ER+AV+WN++I G+ + G + AR+ F+ MP R + SW+ M
Sbjct: 150 MYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQMKSAREVFDEMPCRTIVSWTTM 209
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I Y G Y L +FREM G+ PD++++ +VL C+ LG+ L +GK H + K
Sbjct: 210 INGYARGGCYADALGIFREM-QVVGIEPDEISVISVLPACAQLGA--LEVGKWIHKYSEK 266
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ + N + LV+MYAKCG + A +F M E++VISW+ +I G A+ G A+ +
Sbjct: 267 SGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEKDVISWSTMIGGLANHGKGYAAIRV 326
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
FE MQ GV PN +TF GVL+AC H GL +EG +YF ++ +Y LEP+I+HYGC+VDL G
Sbjct: 327 FEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDVMRVDYHLEPQIEHYGCLVDLLG 386
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
++G +E+A + I M ++P+ W S L++C+ H ++A ++Q L++ +PE G +
Sbjct: 387 RSGQVEQALDTILKMPMQPDSRTWNSLLSSCRIHHNLEIAVVAMEQLLKL-EPEESGN-Y 444
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y +KWEG VRKL+ ++ ++K G S+I
Sbjct: 445 VLLANIYAKLDKWEGVSNVRKLIRSKRIKKTPGCSLI 481
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 87/352 (24%), Positives = 151/352 (42%), Gaps = 68/352 (19%)
Query: 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPERNAV 82
L++C L IH +HI+KL ++ T +L L D L V
Sbjct: 14 LRNCPKIAELKKIH---AHIVKLSLSQSNFLVTKML------------DLCDNLSH---V 55
Query: 83 TWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNE 142
+ TMI F+++ NV S++A+I Y + + + +F +M++ +
Sbjct: 56 DYATMI---------------FQQLENPNVFSYNAIIRTYTHNHKHPLAITVFNQMLTTK 100
Query: 143 GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLK 202
+PD+ T V+ C+ G + +G+ H + K + + L+DMY KCG +
Sbjct: 101 SASPDKFTFPFVIKSCA--GLLCRRLGQQVHAHVCKFGPKTHAITENALIDMYTKCGDMS 158
Query: 203 YALMVFELMEERN-------------------------------VISWTALICGSAHRGY 231
A V+E M ER+ ++SWT +I G A G
Sbjct: 159 GAYQVYEEMTERDAVSWNSLISGHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGC 218
Query: 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG 291
DAL +F MQ G++P+E++ VL AC G ++ G K+ E+ +
Sbjct: 219 YADALGIFREMQVVGIEPDEISVISVLPACAQLGALEVG-KWIHKYSEKSGFLKNAGVFN 277
Query: 292 CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIK 343
+V+++ K G ++EA+ + M +E +VI W + + H + A RV +
Sbjct: 278 ALVEMYAKCGCIDEAWGLFNQM-IEKDVISWSTMIGGLANHGKGYAAIRVFE 328
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 77/187 (41%), Gaps = 25/187 (13%)
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR 229
K H IVK + + T ++D+ + YA M+F+ +E NV S+ A+I H
Sbjct: 24 KKIHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYATMIFQQLENPNVFSYNAIIRTYTHN 83
Query: 230 GYSEDALSLF-EMMQATGVKPNEMTFTGVLTAC-----------VHTGLVDEGRKYFKMI 277
A+++F +M+ P++ TF V+ +C VH + G K +
Sbjct: 84 HKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQQVHAHVCKFGPKTHAIT 143
Query: 278 DEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDM 337
+ ++D++ K G + AY+V M E + + W S ++ Q
Sbjct: 144 E------------NALIDMYTKCGDMSGAYQVYEEMT-ERDAVSWNSLISGHVRLGQMKS 190
Query: 338 AERVIKQ 344
A V +
Sbjct: 191 AREVFDE 197
>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 681
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 148/395 (37%), Positives = 231/395 (58%), Gaps = 6/395 (1%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
L+ +M +V D +++ ++ + NL + LH I ++G V +A +L+ Y
Sbjct: 242 DLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMY 301
Query: 62 V-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ + A+ LF+ + ++ V+W TM+ GY+K G + A F MP ++V W+A+I
Sbjct: 302 IKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIG 361
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
++ A L LF EM ++ + PD++T+ LS CS LG+ L +G H ++ K+
Sbjct: 362 GFVQAKRSKEALALFHEMQAS-SVAPDKITVVNCLSACSQLGA--LDVGIWMHHYVDKHN 418
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+N + T LVDMYAKCG +K A+ VFE M RN ++WTA+ICG A G A+S F
Sbjct: 419 LTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFS 478
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M + G+ P+E+TF GVL+AC H GLVD+GR YF + +Y + P+++HY C+VDL G+A
Sbjct: 479 EMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRA 538
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
GFLEEA E+IR+M EP+ ++WG+ + H M ER + L + +DGG++ L
Sbjct: 539 GFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLEL--DPHDGGIYVL 596
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y WE A +VRK+M + V K G S I
Sbjct: 597 LANMYGDANMWEQARKVRKMMEERGVEKTPGCSSI 631
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 167/342 (48%), Gaps = 23/342 (6%)
Query: 3 LFSQMHRQ-SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
L+ M R+ S D+++ + K C F+ + + H+++LGF S ++V +++H
Sbjct: 141 LYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIH-- 198
Query: 62 VVTSFG---FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
V+ S G ARKLFDE R+ V+WN++I GY + G EA D + +M NV
Sbjct: 199 VLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVT 258
Query: 119 IAAYLNAGAYDPGLKLFREM---ISNEGLTPDQMTIGAVLS---GCSHLGSVGLLMGKSA 172
+ ++A A L L R++ I GL A++ C ++ + +L
Sbjct: 259 MIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMT 318
Query: 173 HGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
+V W T +V YAK G L+ A+ +F M E++V+ W ALI G S
Sbjct: 319 KKTVVS--W-------TTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRS 369
Query: 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC 292
++AL+LF MQA+ V P+++T L+AC G +D G +D +++L +
Sbjct: 370 KEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVD-KHNLTMNVALGTA 428
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
+VD++ K G +++A +V M N + W + + H Q
Sbjct: 429 LVDMYAKCGNIKKAIQVFEEMPGR-NSLTWTAIICGLALHGQ 469
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/345 (20%), Positives = 146/345 (42%), Gaps = 52/345 (15%)
Query: 16 SFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT---SFGFARKL 72
S +L +L++CT ++ + +H+ ++ G IS + + L+ ++ + + K+
Sbjct: 54 SNPLLSLLEACT---SMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKI 110
Query: 73 FDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGL 132
+ N +WN I+GY +S N P+ V
Sbjct: 111 LNNAANLNXFSWNMAIRGYVESEN-----------PINAVL------------------- 140
Query: 133 KLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH---GFIVKNEWELNEQIAT 189
L+R M+ PD T + C+ G + +A+ G +++ ++ + +
Sbjct: 141 -LYRNMLRKGSAIPDNYTYPLLFKVCA-----GFSLSWTANEILGHVIQLGFDSDLFVHN 194
Query: 190 ILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP 249
++ + CG L A +F+ R+++SW ++I G G +++A L+ M V P
Sbjct: 195 AIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMP 254
Query: 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEV 309
+E+T GV++A + GRK + I EE L + ++D++ K +E A +
Sbjct: 255 DEVTMIGVVSASAQLENLALGRKLHQSI-EEMGLNLTVPLANALMDMYIKCKNIEAAKIL 313
Query: 310 IRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
M + V+ W + + + +F + E ++ M PE D
Sbjct: 314 FENMT-KKTVVSWTTMVIG---YAKFGLLESAVRLFNEM--PEKD 352
>gi|125562063|gb|EAZ07511.1| hypothetical protein OsI_29767 [Oryza sativa Indica Group]
Length = 567
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 137/323 (42%), Positives = 207/323 (64%), Gaps = 4/323 (1%)
Query: 68 FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
ARK+FDE+P RN V+WN M++GYS + ++ AR+ F+ MP ++V SW+ MI+ Y AG
Sbjct: 244 LARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGR 303
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ- 186
Y L+LFR M + + P+++T+ +VLS C++L L G+ H FI K++ LN +
Sbjct: 304 YQDTLELFRAMQTESNVQPNEVTMVSVLSACANL--TALEEGRWVHAFIDKHKMVLNNEY 361
Query: 187 -IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
+ L+DMYAKCG A+ +F ++ +NV +W ALI A G ++D++ FE M+ T
Sbjct: 362 NLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNAQDSVDAFEQMKRT 421
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305
G KPN++TF GVLTAC H GLVDEGR+ F+ + ++P ++HYGCMVD+ G+AG LEE
Sbjct: 422 GEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEE 481
Query: 306 AYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365
A E+IR+M + P+V+++G+ L AC+ HK+FD+AERV + + G LI D+Y
Sbjct: 482 AEELIRSMPMAPDVMVFGALLGACRMHKRFDVAERVQSEIHSLNLNAQQSGCHVLISDIY 541
Query: 366 TMNEKWEGAERVRKLMLNQNVRK 388
KW R+++ +RK
Sbjct: 542 AAAGKWFDVLEARQVVQRSGIRK 564
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/362 (26%), Positives = 171/362 (47%), Gaps = 27/362 (7%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVI-HHLHSHILKLGFISHVYVATSLLHEY- 61
FS + R + D F++ +L S +H+ ++ GF++ V+V +LL Y
Sbjct: 82 FSSLLRCGLVPDRFTLPPLLGSAGKLPAFPRTGAQVHAQAVRRGFLADVFVVNALLAMYG 141
Query: 62 VVTSFGFARKLFDELPE-RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ R++F + V+WNT+I GY K G + A+ F+ MP RN SWS M+
Sbjct: 142 ALRDAASMREVFGSCAGVADVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVG 201
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y AG D ++F M + + +T ++++G + G + L K V+N
Sbjct: 202 GYAAAGELDVAREMFDRM---PAIGRNVVTWNSMVTGFARHGLLPLAR-KMFDEMPVRNL 257
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
N ++ Y+ + A +F++M E++V+SWT +I G A G +D L LF
Sbjct: 258 VSWNA-----MLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFR 312
Query: 241 MMQA-TGVKPNEMTFTGVLTACVHTGLVDEGR-------KYFKMIDEEYDLEPRIQHYGC 292
MQ + V+PNE+T VL+AC + ++EGR K+ +++ EY+L
Sbjct: 313 AMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLG------AA 366
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE 352
++D++ K G + A ++ ++ + NV W + + + + +Q R +
Sbjct: 367 LIDMYAKCGRTDIAVKIFNSLDRK-NVSAWNALITRLAMNGNAQDSVDAFEQMKRTGEKP 425
Query: 353 ND 354
ND
Sbjct: 426 ND 427
>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
Length = 668
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 150/396 (37%), Positives = 231/396 (58%), Gaps = 6/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
M ++ QM + V D +++ ++ +C +L + +H +I + G + + +L+
Sbjct: 240 MGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKISLVNALMDM 299
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
YV + LFD + ++ V+W TMI GY+K+G + A F MP +NV +W+AMI
Sbjct: 300 YVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVAWNAMI 359
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ + A L+LFREM + PD++T+ LS CS LG+ L G H +I K+
Sbjct: 360 GSCVQANLSFEALELFREM-QWSNMKPDKVTMLHCLSACSQLGA--LDTGMWTHNYIKKH 416
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
L+ + T L+DMYAKCG + AL VF M RN ++WTA+I G A G DA+ F
Sbjct: 417 NLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTAIIGGLALYGNVNDAIFYF 476
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M +G+ P+E+TF GVLTAC H GLV+EGRKYF + ++L P+ +HY CMV+L G+
Sbjct: 477 SKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQPKHYSCMVNLLGR 536
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG LEEA E+I+TM +E + ++WG+ AC H+ + ER + L + +D G++
Sbjct: 537 AGLLEEAEELIKTMPMEADAMVWGALFFACGIHRNLLIGERAASKLLDL--DPHDSGIYV 594
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y KWE A+ +RK+M+ + V K GSS I
Sbjct: 595 LLANMYREAGKWEEAQNIRKMMMERGVEKTPGSSSI 630
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 87/354 (24%), Positives = 157/354 (44%), Gaps = 68/354 (19%)
Query: 7 MHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTS 65
+ R D+++ + K C + + + +LK+GF +Y+ ++H V V
Sbjct: 145 LTRAGCRPDNYTYSFLFKVCANLVLSYMGFEILGQVLKMGFDKDMYLYNGIIHMLVSVGE 204
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
G A K+FDE R+ V+WN++I GY + R P
Sbjct: 205 SGLAHKVFDEGCVRDLVSWNSLINGYVR-----------RRQPRE--------------- 238
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
+ ++++MI+ E + PD++T+ V+S C+ L S+ L G+ H +I ++ L
Sbjct: 239 -----AMGIYQQMIT-EHVKPDEVTMIGVVSACAQLESLKL--GREIHRYIEESGLNLKI 290
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRG--------------- 230
+ L+DMY KCG L+ ++F+ M ++ V+SWT +I G A G
Sbjct: 291 SLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEK 350
Query: 231 ----------------YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF 274
S +AL LF MQ + +KP+++T L+AC G +D G
Sbjct: 351 NVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGMWTH 410
Query: 275 KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
I ++++L + ++D++ K G + +A +V M N + W + +
Sbjct: 411 NYI-KKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMP-RRNSLTWTAIIGG 462
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 113/231 (48%), Gaps = 4/231 (1%)
Query: 111 NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGK 170
NV SW+A+I + + GL L++ M++ G PD T + C++L V MG
Sbjct: 117 NVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANL--VLSYMGF 174
Query: 171 SAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRG 230
G ++K ++ + + ++ M G A VF+ R+++SW +LI G R
Sbjct: 175 EILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRR 234
Query: 231 YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHY 290
+A+ +++ M VKP+E+T GV++AC + GR+ + I EE L +I
Sbjct: 235 QPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYI-EESGLNLKISLV 293
Query: 291 GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERV 341
++D++ K G LE + MR + V+ W + + ++ DMA ++
Sbjct: 294 NALMDMYVKCGDLEAGKVLFDNMR-KKTVVSWTTMIVGYAKNGLLDMAGKL 343
>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 640
Score = 288 bits (736), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 153/398 (38%), Positives = 234/398 (58%), Gaps = 13/398 (3%)
Query: 3 LFSQMHRQSVP-SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+S+M SV D + +LK+C+ +L + +HSH+ KLG+ S V V+ L+ Y
Sbjct: 122 FYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMY 181
Query: 62 ----VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
++ S G +FD PE + +WN MI GY K G AR FE MP R+V SWS
Sbjct: 182 ASCGLIESAGL---VFDRTPECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSV 238
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MI Y+ + GL LF++M+ E + P++ + LS C+HLG+ + G+ ++
Sbjct: 239 MINGYVQESRFKEGLGLFQDMM-GEKIEPNESVLVNALSACAHLGA--MEQGQWIERYME 295
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
+ L ++ T L+DMY+KCG ++ AL VF M+E+NV++W+A+I G A G +DAL+
Sbjct: 296 RKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALN 355
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LF M+ GVKPNE+TF G+L AC H+ LVDEG +F + Y L+P H+ CMVDL+
Sbjct: 356 LFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLY 415
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
G+AG L++A VI++M +PN IWG+ L AC+ H ++ E+V K+ L + N GG
Sbjct: 416 GRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQVGKRLLEL--DPNHGGR 473
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ ++Y +W+ +R++M + V K G S I
Sbjct: 474 YVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFI 511
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 92/370 (24%), Positives = 155/370 (41%), Gaps = 73/370 (19%)
Query: 17 FSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLF 73
+ IL L SC +LT IH + + G S +VA+ +L ++ G +AR LF
Sbjct: 36 YPILRHLSSCKTLKDLTQIH---AQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLF 92
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
+ + + NT+I+ Y+ S N +A F+
Sbjct: 93 YRIRKPDIFIANTLIRAYAFSPNPIDAVVFYS---------------------------- 124
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
EM + + PD T +L CS + S L +G++ H + K W ++ LV
Sbjct: 125 ---EMTESSVVFPDVHTFPLLLKACSEIPS--LRLGEAIHSHVFKLGWSSEVSVSNFLVQ 179
Query: 194 MYA-------------------------------KCGFLKYALMVFELMEERNVISWTAL 222
MYA KCG K A +FE M +R+V+SW+ +
Sbjct: 180 MYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVM 239
Query: 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD 282
I G ++ L LF+ M ++PNE L+AC H G +++G ++ + E +
Sbjct: 240 INGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQG-QWIERYMERKN 298
Query: 283 LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVI 342
+ ++ ++D++ K G +E A EV M+ E NV+ W + + + Q A +
Sbjct: 299 VRLTVRLGTALIDMYSKCGSVERALEVFHKMK-EKNVLAWSAMINGLAINGQGKDALNLF 357
Query: 343 KQ-ALRMVKP 351
Q ++ VKP
Sbjct: 358 SQMEMQGVKP 367
>gi|224134663|ref|XP_002327460.1| predicted protein [Populus trichocarpa]
gi|222836014|gb|EEE74435.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 287 bits (735), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 147/394 (37%), Positives = 232/394 (58%), Gaps = 6/394 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ M + ++F+ ++++C NL + H ++K G+ S+ +V L+H Y
Sbjct: 99 LYKHMLESNYLPNNFTFSFVIRACIDVFNLQMGLCFHGQVVKFGWESYDFVQNGLIHLYA 158
Query: 63 VTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
F AR +FD +R+ VTW +I GY SG V AR+ F+RMP +N SW A+IA
Sbjct: 159 NCGFMDLARNMFDMSIKRDVVTWTCLISGYLNSGQVLIARELFDRMPEKNPVSWGALIAG 218
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ G + L++F +M G ++ +I L+ C+ LG+ L G+ H ++ ++
Sbjct: 219 YVRIGFFKEALEVFYDM-QVSGFRLNRASIVGALTACAFLGA--LDQGRWIHAYVKRHHM 275
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
L+ + T L+DMYAKCG ++ A VF+ M++R+V ++T LI G A+ SE A+ LF
Sbjct: 276 SLDRMLGTALIDMYAKCGCIEMACSVFDEMDDRDVYAFTCLISGLANHDKSEAAIDLFNR 335
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
MQ GV PNE+TF VL AC G+VDEG + F+ + Y +EP+IQHYGC+VDL G+AG
Sbjct: 336 MQDEGVVPNEVTFVCVLNACSRMGMVDEGLRIFESMSNRYVIEPQIQHYGCLVDLLGRAG 395
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
+EEA +V+R M L+P+ G+ L AC+ H + E ++ ++ + + GGV L+
Sbjct: 396 KIEEAKQVVREMPLQPDSYTLGALLDACRVHGDVQLGEEMVDSLVQ--RCLDHGGVHVLL 453
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y +KWE A ++RK M ++N+RK G S I
Sbjct: 454 SNMYASADKWEDASKIRKKMEDKNIRKLPGCSSI 487
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 86/372 (23%), Positives = 145/372 (38%), Gaps = 82/372 (22%)
Query: 32 LTVIHHLHSHILKLGFISHVYVATSLL----HEYVVTSFGFARKLFDELPERNAVTWNTM 87
++ + + SH+ + Y A ++ H +S +A +LF L ++ WNTM
Sbjct: 24 ISQLKQIQSHLTVTATLKDPYAAAKIISLHAHSNARSSLFYAERLFLCLQNKSTFIWNTM 83
Query: 88 IKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD 147
++ + + A L++ M+ + L P+
Sbjct: 84 MQAFVEKNEAVRA-------------------------------FSLYKHMLESNYL-PN 111
Query: 148 QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMV 207
T V+ C + L MG HG +VK WE + + L+ +YA CGF+ A +
Sbjct: 112 NFTFSFVIRAC--IDVFNLQMGLCFHGQVVKFGWESYDFVQNGLIHLYANCGFMDLARNM 169
Query: 208 FEL-------------------------------MEERNVISWTALICGSAHRGYSEDAL 236
F++ M E+N +SW ALI G G+ ++AL
Sbjct: 170 FDMSIKRDVVTWTCLISGYLNSGQVLIARELFDRMPEKNPVSWGALIAGYVRIGFFKEAL 229
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
+F MQ +G + N + G LTAC G +D+GR + + R+ ++D+
Sbjct: 230 EVFYDMQVSGFRLNRASIVGALTACAFLGALDQGRWIHAYVKRHHMSLDRMLGTA-LIDM 288
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
+ K G +E A V M + +V + ++ H D +E I RM D G
Sbjct: 289 YAKCGCIEMACSVFDEMD-DRDVYAFTCLISGLANH---DKSEAAIDLFNRM----QDEG 340
Query: 357 V----FTLICDL 364
V T +C L
Sbjct: 341 VVPNEVTFVCVL 352
>gi|125541284|gb|EAY87679.1| hypothetical protein OsI_09093 [Oryza sativa Indica Group]
Length = 493
Score = 287 bits (735), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 152/390 (38%), Positives = 236/390 (60%), Gaps = 12/390 (3%)
Query: 11 SVPSDSFSILHILKSCTHFNNLTVIHHL----HSHILKLGFISHVYVATSLLHEYVVTSF 66
VP+D ++L +L +C + + L H+ +LKL F SH+ ++T L+ Y +
Sbjct: 63 PVPND-VTLLTVLSACADSPSSPLARRLALSVHARVLKL-FPSHLLLSTCLVRFYFASRL 120
Query: 67 G-FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
A +LFD +P R+AVT+NT+I G ++G V A + F+ MP + SW+A+I +
Sbjct: 121 PHLALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKN 180
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
G +D + FR M+ +G+ PD +T+ AV+S C+ +G++GL G H +V+ E N
Sbjct: 181 GRHDEAINCFRAMLL-DGVEPDYVTLIAVISACAEVGALGL--GMWVHRLVVRQGLERNV 237
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
+IA L+DMYA+CG ++ A VF M +R V+SW ++I G A G DA+ FE M+
Sbjct: 238 RIANSLIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRRE 297
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305
G KP+ +TFTGVLTAC H GL DEG +Y+ ++ EY + R++HYGC+VDL G++G LEE
Sbjct: 298 GFKPDAVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGRLEE 357
Query: 306 AYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365
A V+ TM + PN ++ G+ LA C+ H MAE++++ L + P D + L+ ++Y
Sbjct: 358 AMRVVTTMPMRPNEVVLGALLAGCRMHGDVGMAEQLMQHLLEL-DPGGDAN-YVLLSNIY 415
Query: 366 TMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
KW+GA +VR LM + +RK G S +
Sbjct: 416 AAVGKWDGAGKVRSLMKARGLRKRPGYSAV 445
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 107/250 (42%), Gaps = 37/250 (14%)
Query: 111 NVASWSAMIAAYLNAG-AYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL-- 167
+VASW++ IA G L + S P+ +T+ VLS C+ S L
Sbjct: 29 DVASWTSAIARPAKQGDLPAAAAALSAMLSSPAAPVPNDVTLLTVLSACADSPSSPLARR 88
Query: 168 MGKSAHGFIVKNEWELNEQIATILVDMY-------------------------------A 196
+ S H ++K + + ++T LV Y
Sbjct: 89 LALSVHARVLK-LFPSHLLLSTCLVRFYFASRLPHLALQLFDAMPVRSAVTYNTVISGLM 147
Query: 197 KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTG 256
+ G + A VF+ M + +SWTALI G G ++A++ F M GV+P+ +T
Sbjct: 148 RNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAINCFRAMLLDGVEPDYVTLIA 207
Query: 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE 316
V++AC G + G +++ + LE ++ ++D++ + G +E A +V MR +
Sbjct: 208 VISACAEVGALGLGMWVHRLVVRQ-GLERNVRIANSLIDMYARCGQVELARQVFSGMR-K 265
Query: 317 PNVIIWGSFL 326
V+ W S +
Sbjct: 266 RTVVSWNSMI 275
>gi|125603908|gb|EAZ43233.1| hypothetical protein OsJ_27833 [Oryza sativa Japonica Group]
Length = 567
Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 137/323 (42%), Positives = 206/323 (63%), Gaps = 4/323 (1%)
Query: 68 FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
ARK+FDE+P RN V+WN M++GYS + ++ AR+ F+ MP ++V SW+ MI+ Y AG
Sbjct: 244 LARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGR 303
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ- 186
Y L+LFR M + + P+++T+ +VLS C++L L G+ H FI K++ LN +
Sbjct: 304 YQDTLELFRAMQTESNVQPNEVTMVSVLSACANL--TALEEGRWVHAFIDKHKMVLNNEY 361
Query: 187 -IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
+ L+DMYAKCG A+ +F ++ +NV +W ALI A G + D++ FE M+ T
Sbjct: 362 NLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRT 421
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305
G KPN++TF GVLTAC H GLVDEGR+ F+ + ++P ++HYGCMVD+ G+AG LEE
Sbjct: 422 GEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEE 481
Query: 306 AYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365
A E+IR+M + P+V+++G+ L AC+ HK+FD+AERV + + G LI D+Y
Sbjct: 482 AEELIRSMPMAPDVMVFGALLGACRMHKRFDVAERVQSEIHSLNLNAQQSGCHVLISDIY 541
Query: 366 TMNEKWEGAERVRKLMLNQNVRK 388
KW R+++ +RK
Sbjct: 542 AAAGKWFDVLEARQVVQRSGIRK 564
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/334 (27%), Positives = 163/334 (48%), Gaps = 27/334 (8%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVI-HHLHSHILKLGFISHVYVATSLLHEY- 61
FS + R + D F++ +L S +H+ ++ GF++ V+V +LL Y
Sbjct: 82 FSSLLRCGLVPDRFTLPPLLGSAGKLPAFPRTGAQVHAQAVRRGFLADVFVVNALLAMYG 141
Query: 62 VVTSFGFARKLFDELPE-RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ R++F + V+WNT+I GY K G + A+ F+ MP RN SWS M+
Sbjct: 142 ALRDAASMREVFGSCAGVADVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVG 201
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y AG D ++F M + + +T ++++G + G + L K V+N
Sbjct: 202 GYAAAGELDVAREMFDRM---PAIGRNVVTWNSMVTGFARHGLLPLAR-KMFDEMPVRNL 257
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
N ++ Y+ + A +F++M E++V+SWT +I G A G +D L LF
Sbjct: 258 VSWNA-----MLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFR 312
Query: 241 MMQA-TGVKPNEMTFTGVLTACVHTGLVDEGR-------KYFKMIDEEYDLEPRIQHYGC 292
MQ + V+PNE+T VL+AC + ++EGR K+ +++ EY+L
Sbjct: 313 AMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLG------AA 366
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
++D++ K G + A ++ ++ + NV W + +
Sbjct: 367 LIDMYAKCGRTDIAVKIFNSLDRK-NVSAWNALI 399
>gi|255540011|ref|XP_002511070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550185|gb|EEF51672.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 551
Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 144/397 (36%), Positives = 233/397 (58%), Gaps = 7/397 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ F QM R SVP D S LK+C H L++ LHS + K GF+S +YV SL+H
Sbjct: 122 LHFFLQMRRFSVPPDFHSYPFALKACAHLRVLSLAQCLHSQVFKFGFVSDLYVINSLIHV 181
Query: 61 Y-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + +A ++FDE +R+ V++N ++ G+ K+G +AR+ F+ MP+R+ SW ++I
Sbjct: 182 YSLFDCLNYACQVFDESSDRDVVSYNALVDGFVKAGEFVKAREIFDLMPMRDSVSWGSLI 241
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A Y + + LF M+ + L PD + + + LS C+ LG L GK H +I KN
Sbjct: 242 AGYAQGSYCNEAIGLFDLMMGLK-LEPDNIALVSALSACAQLGE--LEKGKQIHDYIKKN 298
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + ++T LVD YAK G + A+ VFEL ++++I+W A++ G A G S L+ F
Sbjct: 299 RIQADSFLSTGLVDFYAKSGCIDTAIKVFELSPDKSLITWNAMLIGIAMHGNSHLLLNYF 358
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M G+KP+ ++F GVL C H GLVDE +K F ++ Y + ++HYGCM DL +
Sbjct: 359 SRMMEAGIKPDGISFLGVLVGCSHGGLVDEAKKLFDEMESIYGVRRELKHYGCMADLLAR 418
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG ++EA E+ + + + ++ +W L C+ H ++AE+ KQ + + KPE DGGV++
Sbjct: 419 AGLIKEAVELTKGLPMGGDIFVWSGLLGGCRIHGNIEIAEQAAKQVMEL-KPE-DGGVYS 476
Query: 360 LICDLYTMNEKWEGAERVRKLM-LNQNVRKARGSSVI 395
++ ++Y ++WE ++R+ M N+ V+K G S I
Sbjct: 477 ILANVYANADRWEDVVKIRRSMSSNRAVKKNAGRSSI 513
>gi|326506208|dbj|BAJ86422.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 582
Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 144/398 (36%), Positives = 234/398 (58%), Gaps = 8/398 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF + R D + L C LH H K G SH V L+H
Sbjct: 60 LRLFDHLLRSGADPDPIAYALALARCARERAYPAAAQLHGHAAKRGAASHRRVRNGLIHA 119
Query: 61 YVVTSFGF-ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y V F ARK+FD PE + + WN +++GY++ + R+FF +MP R+ SW+ +I
Sbjct: 120 YSVCGMLFDARKVFDHGPEVDMIAWNCLLRGYAQGRDTGALREFFAQMPARDSVSWNTVI 179
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A + G ++ + +FREM+++ PD++T+ +V+S ++LG+ L G AH ++ +
Sbjct: 180 AWCVANGEHEEAVAVFREMLASNECQPDRVTLVSVISAIAYLGA--LAQGLWAHAYVCRK 237
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFE-LMEERNVISWTALICGSAHRGYSEDALSL 238
E E++E++++ L++MY+KCGF++ A+ VFE R+V +W A++ G G SE AL L
Sbjct: 238 EIEVDEKLSSALINMYSKCGFIEGAVYVFENSCALRSVDTWNAMLAGFTASGCSERALEL 297
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F M+++G PN++TF +L AC H G V+EG YF+ + +EP I HYGCMVDLF
Sbjct: 298 FTRMESSGFVPNKITFNTLLNACSHGGFVEEGIGYFERMTNSSSIEPDIAHYGCMVDLFC 357
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVK-PENDGGV 357
+AG E+A E+I+ M +EP+ +W + + AC+ + F++ + K R+++ ND
Sbjct: 358 RAGLFEKAEEMIQMMPMEPDAAVWKALVGACRTYSNFELGK---KAGHRLIEAAPNDHAG 414
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ ++Y ++ W+G +VRKLMLN V+K GSS I
Sbjct: 415 YVLLSNIYALDGNWKGVYKVRKLMLNCGVQKVPGSSSI 452
>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 568
Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 154/401 (38%), Positives = 234/401 (58%), Gaps = 13/401 (3%)
Query: 1 MQLFSQMHRQSVPS---DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSL 57
+ +F QM S S D F+ ++KSCT + +H + K G H +L
Sbjct: 93 ISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRLGMQVHGLVYKFGADFHCITENAL 152
Query: 58 LHEYVVTSFG---FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVAS 114
+ Y T FG A K+F+E+ R+ ++WN++I GY K G + AR+ F+ MP+R + S
Sbjct: 153 IDMY--TKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQMNSARELFDDMPVRTIVS 210
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
W+ MI Y G Y L +FREM G+ PD+++I AVL C+ LG+ L +GK H
Sbjct: 211 WTTMITGYGRMGCYGDALDVFREM-QMVGIEPDEISIIAVLPACAQLGA--LEVGKWIHM 267
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
+ KN + I L++MYAKCG + A +F+ + E++VISW+ +I G A+ G +
Sbjct: 268 YADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQLVEKDVISWSTMIGGLANHGKGYE 327
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
A+ LFE M V PNE+TF GVL AC HTGL DEG KYF ++ Y +EP I+HYGC++
Sbjct: 328 AIQLFEEMCKVRVAPNEITFLGVLLACSHTGLWDEGLKYFDVMSASYHIEPEIEHYGCLI 387
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
DL G++G L +A + I M ++P+ IW S L++C+ H+ +A +KQ + + +PE
Sbjct: 388 DLLGRSGCLGQALDTISKMPIKPDSRIWNSLLSSCRIHRNLQIAVIAVKQLMEL-EPEES 446
Query: 355 GGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G + L+ ++Y + KWE +RKL+ N+ ++K GSS I
Sbjct: 447 GN-YVLLANMYAEHGKWEDVSNIRKLIRNKRIKKTPGSSSI 486
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 27/171 (15%)
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR 229
K H +VK + + T ++D G + YA ++F+ + N+ ++ A+I AH
Sbjct: 27 KKIHAHVVKLSLSQSNFLVTKMLDSCDNLGHVSYATLLFKQLLHPNIFTYNAIIRTYAHN 86
Query: 230 GYSEDALSLFEMM---QATGVKPNEMTFTGVLTAC-----------VHTGLVDEGRKYFK 275
+ A+S+F M V P++ TF V+ +C VH GLV + F
Sbjct: 87 RHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRLGMQVH-GLVYKFGADFH 145
Query: 276 MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
I E ++D++ K G L A +V M +VI W S +
Sbjct: 146 CITE-----------NALIDMYTKFGDLTNACKVFEEMS-HRDVISWNSLI 184
>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 287 bits (734), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 153/396 (38%), Positives = 237/396 (59%), Gaps = 10/396 (2%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+S M + SV ++F+ +L +C + IH +H+ K GF +H SL+H YV
Sbjct: 112 LYSHMLQNSVLPNNFTFPSLLIACRKIQHGMQIH---AHLFKFGFGAHSVCLNSLIHMYV 168
Query: 63 V-TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+ AR++F +P ++V+W ++I GYSK G + EA F+ MP +N ASW+AM+AA
Sbjct: 169 TFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAA 228
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ + LF M + D+ +LS C+ LG+ L GK H +I +N
Sbjct: 229 YVQTNRFHEAFALFDRMKAENNNVLDKFVATTMLSACTGLGA--LDQGKWIHEYIKRNGI 286
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFE--LMEERNVISWTALICGSAHRGYSEDALSLF 239
EL+ ++ T +VDMY KCG L+ AL VF + R + SW +I G A G E A+ LF
Sbjct: 287 ELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLF 346
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+ M+ V P+++TF +LTAC H+GLV+EGR YF + Y +EPR++H+GCMVDL G+
Sbjct: 347 KEMERQRVAPDDITFLNLLTACAHSGLVEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGR 406
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG + EA ++I M + P+V + G+ L ACK+H+ ++ E + ++ + + +P N+ G +
Sbjct: 407 AGMVPEARKLIDEMPVSPDVTVLGTLLGACKKHRNIELGEEIGRRVIEL-EP-NNSGRYV 464
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ +LY KWE A +VRKLM ++ V+KA G S+I
Sbjct: 465 LLANLYANAGKWEDAAKVRKLMDDRGVKKAPGFSMI 500
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 80/358 (22%), Positives = 154/358 (43%), Gaps = 66/358 (18%)
Query: 30 NNLTVIHHLHSHILKLGFISHVYVATSLLH----EYVVTSFGFARKLFDELPERNAVTWN 85
+++ + HS I++LG SH ++ L++ + +A KLFD +P+ +A +N
Sbjct: 33 QSMSQLRQYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDSIPQPDAFLYN 92
Query: 86 TMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLT 145
T+IKG+ S + +P ++ L L+ M+ N L
Sbjct: 93 TIIKGFLHS----------QLLPTNSI-------------------LLLYSHMLQNSVL- 122
Query: 146 PDQMTIGAVLSGC----------SHL-----GSVGLLMGKSAHGFIVKNEWELNEQIA-- 188
P+ T ++L C +HL G+ + + H ++ E ++
Sbjct: 123 PNNFTFPSLLIACRKIQHGMQIHAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHT 182
Query: 189 ---------TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
T L+ Y+K G + A +F+LM ++N SW A++ +A +LF
Sbjct: 183 IPHPDSVSWTSLISGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALF 242
Query: 240 EMMQATGVKP-NEMTFTGVLTACVHTGLVDEGRKYFKMIDEE-YDLEPRIQHYGCMVDLF 297
+ M+A ++ T +L+AC G +D+G+ + I +L+ ++ +VD++
Sbjct: 243 DRMKAENNNVLDKFVATTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLT--TAIVDMY 300
Query: 298 GKAGFLEEAYEVIRTMRLEPNVI-IWGSFLAACKEHKQFDMAERVIKQALRM-VKPEN 353
K G LE+A +V ++ L I W + H + A ++ K+ R V P++
Sbjct: 301 CKCGCLEKALQVFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDD 358
Score = 41.2 bits (95), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 68/158 (43%), Gaps = 23/158 (14%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTH----------FNNLTVIHHLHSHILKLGFISH 50
+QLF +M RQ V D + L++L +C H F+ + ++ + + G +
Sbjct: 343 IQLFKEMERQRVAPDDITFLNLLTACAHSGLVEEGRNYFSYMIRVYGIEPRMEHFGCMVD 402
Query: 51 VYVATSLLHEYVVTSFGFARKLFDELPERNAVT-WNTMIKGYSKSGNVCEARDFFER--- 106
+ ++ E ARKL DE+P VT T++ K N+ + R
Sbjct: 403 LLGRAGMVPE--------ARKLIDEMPVSPDVTVLGTLLGACKKHRNIELGEEIGRRVIE 454
Query: 107 MPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
+ N + + Y NAG ++ K+ R+++ + G+
Sbjct: 455 LEPNNSGRYVLLANLYANAGKWEDAAKV-RKLMDDRGV 491
>gi|347954502|gb|AEP33751.1| chloroplast biogenesis 19, partial [Lepidium virginicum]
Length = 485
Score = 287 bits (734), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 148/398 (37%), Positives = 247/398 (62%), Gaps = 12/398 (3%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLT--VIHHLHSHILKLGF-ISHVYVATSLLHE 60
FS M + + + + +L +C +F + + + + LH + KLG SHV V T++L
Sbjct: 44 FSDMRLAGIEPNHITFIALLSACGNFPSGSEGLGYLLHGYACKLGLERSHVMVGTAILGM 103
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + AR +FD + ++N+VTWNTMI GY ++G V A D F++MP R++ SW+AMI
Sbjct: 104 YSKSGHLRKARLVFDYIEDKNSVTWNTMIDGYMRNGQVDNAVDVFDKMPDRDLISWTAMI 163
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
++ G ++ L FREM G+ PD + I + ++ C++LG+ L G H +++
Sbjct: 164 TGFVKKGFHEEALAWFREM-QISGVNPDYVAIISAVAACTNLGA--LSFGLWVHRYVLSQ 220
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
++ N +++ L+D+Y +CG +++A VF+ ME+R V+SW ++I G A G + ++L F
Sbjct: 221 DFRNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNANESLVYF 280
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MQ G P+ +TFTG LTAC H GLV+EG +YF+M+ +Y + PRI+HYGC+VDL+ +
Sbjct: 281 RKMQREGFTPDGVTFTGALTACSHVGLVEEGFQYFQMMKHDYRISPRIEHYGCLVDLYSR 340
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFD-MAERVIKQALRM-VKPENDGGV 357
AG LE+A+ V+ +M ++PN ++ GS LAAC+ H +AER++K + VK ++
Sbjct: 341 AGRLEDAFIVVESMPMKPNEVVIGSLLAACRNHGNHTILAERLMKYITDLDVKSHSN--- 397
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++ ++Y + KWEGA ++R+ M ++K G S I
Sbjct: 398 YVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGYSSI 435
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275
++SWT+ I + G +A+ F M+ G++PN +TF +L+AC + EG Y
Sbjct: 21 IVSWTSRITLLSRDGRLAEAVREFSDMRLAGIEPNHITFIALLSACGNFPSGSEGLGYLL 80
Query: 276 MIDEEYDLEPRIQHYGCMV-----DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330
Y + ++ MV ++ K+G L +A V + + N + W + +
Sbjct: 81 ---HGYACKLGLERSHVMVGTAILGMYSKSGHLRKARLVFDYIE-DKNSVTWNTMIDGYM 136
Query: 331 EHKQFDMAERVIKQ 344
+ Q D A V +
Sbjct: 137 RNGQVDNAVDVFDK 150
>gi|224119882|ref|XP_002318186.1| predicted protein [Populus trichocarpa]
gi|222858859|gb|EEE96406.1| predicted protein [Populus trichocarpa]
Length = 537
Score = 286 bits (733), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 147/397 (37%), Positives = 233/397 (58%), Gaps = 7/397 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ F+QM R SVP DS S LK+C + LH +LK GF+S +YV SL+H
Sbjct: 109 LHFFTQMRRLSVPLDSHSFPFTLKACAQLGGVFSARCLHCQVLKFGFLSDLYVMNSLIHG 168
Query: 61 YVVTSFGF-ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y+V+ A K+FDE P+R+ V++N +I G+ K+G+V +AR+ F+ MP+R+ SW+ +I
Sbjct: 169 YMVSDMSNDAYKVFDESPQRDVVSYNVLIDGFVKAGDVVKARELFDLMPVRDSVSWNTII 228
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A + ++LF M+ E + PD + + + LS C+ LG L GK H +I +N
Sbjct: 229 AGCAKGDYCEEAIELFDFMMDLE-IRPDNVALVSTLSACAQLGE--LEKGKKIHDYIERN 285
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+++ ++T LVD YAKCG + AL +F+ ++N+ +W A++ G A GY E L F
Sbjct: 286 AMKVDTFLSTGLVDFYAKCGCVDIALKIFDSSSDKNLFTWNAMLVGLAMHGYGELLLEYF 345
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M GVKP+ ++ GVL C H+GLVDE RK F ++ Y + +HYGCM DL G+
Sbjct: 346 SRMIEAGVKPDGISILGVLVGCSHSGLVDEARKLFDEMESVYGVPREPKHYGCMADLLGR 405
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG +++ E+I+ M ++ +W L C+ H ++AE+ K + + KP+ DGGV++
Sbjct: 406 AGLIKKVMEMIKDMPRGGDMSVWSGLLGGCRIHGDVEIAEKAAKHLMEL-KPD-DGGVYS 463
Query: 360 LICDLYTMNEKWEGAERVRK-LMLNQNVRKARGSSVI 395
++ ++Y E+WE +R+ L N+ V K G S+I
Sbjct: 464 ILANVYANAERWEDVMNIRRSLSSNRVVTKIAGFSLI 500
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/329 (21%), Positives = 141/329 (42%), Gaps = 27/329 (8%)
Query: 19 ILHILKSCTHFNNLTVIHHLHSHIL---KLGFISHVYVATSLLHEYVVTS--------FG 67
I+ ++K C ++ +H LH++ + L F S + T L+ +
Sbjct: 19 IIKLIKQC---KTISQLHQLHAYTITNTPLSFHSSPSLLTKFLYTLTTKAKSKSSTSLLH 75
Query: 68 FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
+A+ +F+ + + +NT+I+ ++ A FF +M +V S L A A
Sbjct: 76 YAKSIFNSIQNPSTFCYNTIIRVHTLLSFPIPALHFFTQMRRLSVPLDSHSFPFTLKACA 135
Query: 128 YDPGL---KLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN 184
G+ + + G D + +++ G ++ S + V +E
Sbjct: 136 QLGGVFSARCLHCQVLKFGFLSDLYVMNSLIHGY-------MVSDMSNDAYKVFDESPQR 188
Query: 185 EQIA-TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQ 243
+ ++ +L+D + K G + A +F+LM R+ +SW +I G A Y E+A+ LF+ M
Sbjct: 189 DVVSYNVLIDGFVKAGDVVKARELFDLMPVRDSVSWNTIIAGCAKGDYCEEAIELFDFMM 248
Query: 244 ATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFL 303
++P+ + L+AC G +++G+K I+ G +VD + K G +
Sbjct: 249 DLEIRPDNVALVSTLSACAQLGELEKGKKIHDYIERNAMKVDTFLSTG-LVDFYAKCGCV 307
Query: 304 EEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
+ A ++ + + N+ W + L H
Sbjct: 308 DIALKIFDSSS-DKNLFTWNAMLVGLAMH 335
>gi|46805412|dbj|BAD16914.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|215704291|dbj|BAG93131.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 527
Score = 286 bits (733), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 152/390 (38%), Positives = 236/390 (60%), Gaps = 12/390 (3%)
Query: 11 SVPSDSFSILHILKSCTHFNNLTVIHHL----HSHILKLGFISHVYVATSLLHEYVVTSF 66
VP+D ++L +L +C + + L H+ +LKL F SH+ ++T L+ Y +
Sbjct: 97 PVPND-VTLLTVLSACADSPSSPLARRLALSVHARVLKL-FPSHLLLSTCLVRFYFASRL 154
Query: 67 G-FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
A +LFD +P R+AVT+NT+I G ++G V A + F+ MP + SW+A+I +
Sbjct: 155 PHLALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKN 214
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
G +D + FR M+ +G+ PD +T+ AV+S C+ +G++GL G H +V+ E N
Sbjct: 215 GRHDEAIDCFRAMLL-DGVEPDYVTLIAVISACAEVGALGL--GMWVHRLVVRQGLERNV 271
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
+IA L+DMYA+CG ++ A VF M +R V+SW ++I G A G DA+ FE M+
Sbjct: 272 RIANSLIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRRE 331
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305
G KP+ +TFTGVLTAC H GL DEG +Y+ ++ EY + R++HYGC+VDL G++G LEE
Sbjct: 332 GFKPDAVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGQLEE 391
Query: 306 AYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365
A V+ TM + PN ++ G+ LA C+ H MAE++++ L + P D + L+ ++Y
Sbjct: 392 AMRVVTTMPMRPNEVVLGALLAGCRMHGDVGMAEQLMQHLLEL-DPGGDAN-YVLLSNIY 449
Query: 366 TMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
KW+GA +VR LM + +RK G S +
Sbjct: 450 AAVGKWDGAGKVRSLMKARGLRKRPGYSAV 479
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 106/250 (42%), Gaps = 37/250 (14%)
Query: 111 NVASWSAMIAAYLNAG-AYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL-- 167
+VASW++ IA G L + S P+ +T+ VLS C+ S L
Sbjct: 63 DVASWTSAIARPAKQGDLPAAAAALSAMLSSPAAPVPNDVTLLTVLSACADSPSSPLARR 122
Query: 168 MGKSAHGFIVKNEWELNEQIATILVDMY-------------------------------A 196
+ S H ++K + + ++T LV Y
Sbjct: 123 LALSVHARVLK-LFPSHLLLSTCLVRFYFASRLPHLALQLFDAMPVRSAVTYNTVISGLM 181
Query: 197 KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTG 256
+ G + A VF+ M + +SWTALI G G ++A+ F M GV+P+ +T
Sbjct: 182 RNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAIDCFRAMLLDGVEPDYVTLIA 241
Query: 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE 316
V++AC G + G +++ + LE ++ ++D++ + G +E A +V MR +
Sbjct: 242 VISACAEVGALGLGMWVHRLVVRQ-GLERNVRIANSLIDMYARCGQVELARQVFSGMR-K 299
Query: 317 PNVIIWGSFL 326
V+ W S +
Sbjct: 300 RTVVSWNSMI 309
>gi|297599966|ref|NP_001048246.2| Os02g0769900 [Oryza sativa Japonica Group]
gi|46805413|dbj|BAD16915.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255671273|dbj|BAF10160.2| Os02g0769900 [Oryza sativa Japonica Group]
Length = 438
Score = 286 bits (733), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 152/389 (39%), Positives = 236/389 (60%), Gaps = 12/389 (3%)
Query: 12 VPSDSFSILHILKSCTHFNNLTVIHHL----HSHILKLGFISHVYVATSLLHEYVVTSFG 67
VP+D ++L +L +C + + L H+ +LKL F SH+ ++T L+ Y +
Sbjct: 9 VPND-VTLLTVLSACADSPSSPLARRLALSVHARVLKL-FPSHLLLSTCLVRFYFASRLP 66
Query: 68 -FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAG 126
A +LFD +P R+AVT+NT+I G ++G V A + F+ MP + SW+A+I + G
Sbjct: 67 HLALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNG 126
Query: 127 AYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ 186
+D + FR M+ +G+ PD +T+ AV+S C+ +G++GL G H +V+ E N +
Sbjct: 127 RHDEAIDCFRAMLL-DGVEPDYVTLIAVISACAEVGALGL--GMWVHRLVVRQGLERNVR 183
Query: 187 IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
IA L+DMYA+CG ++ A VF M +R V+SW ++I G A G DA+ FE M+ G
Sbjct: 184 IANSLIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREG 243
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
KP+ +TFTGVLTAC H GL DEG +Y+ ++ EY + R++HYGC+VDL G++G LEEA
Sbjct: 244 FKPDAVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGQLEEA 303
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366
V+ TM + PN ++ G+ LA C+ H MAE++++ L + P D + L+ ++Y
Sbjct: 304 MRVVTTMPMRPNEVVLGALLAGCRMHGDVGMAEQLMQHLLEL-DPGGDAN-YVLLSNIYA 361
Query: 367 MNEKWEGAERVRKLMLNQNVRKARGSSVI 395
KW+GA +VR LM + +RK G S +
Sbjct: 362 AVGKWDGAGKVRSLMKARGLRKRPGYSAV 390
>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 286 bits (733), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 140/396 (35%), Positives = 242/396 (61%), Gaps = 6/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF M ++ +D+ +++ I+ +C+H + + +I + VY+ +L+
Sbjct: 202 LRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDM 261
Query: 61 YVVTSFG-FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y S A+ +FD + ERN V+WN ++ G++K GN+ AR F+ MP R+V SW++MI
Sbjct: 262 YGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMI 321
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y A + +KLF+EM++ + + PD++T+ +VLS C+HLG L +G + H +I ++
Sbjct: 322 TGYSQASQFSDAVKLFQEMMAAK-VKPDKVTVASVLSACAHLGK--LDVGWAVHHYIRRH 378
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + + L+DMY KCG ++ AL VF M++++ +SWT++I G A G++ AL LF
Sbjct: 379 GVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLF 438
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M GV+P TF G+L AC H GLV++G +YF+ ++ + L P ++HYGC+VDL +
Sbjct: 439 SQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSR 498
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
+G +++AYE I+ M + P+V++W L+ACK H +AE K+ L + D G +
Sbjct: 499 SGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRLLEL--DPCDSGNYV 556
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ + Y ++W+ A ++R+LM + +V+K GSS I
Sbjct: 557 LLSNTYAGVDRWDDAMKMRELMEDSDVQKPSGSSSI 592
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 98/379 (25%), Positives = 174/379 (45%), Gaps = 68/379 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ ++++MH Q + ++ +++ + K+C +++ +H H LKLGF S+++V+ +L+H
Sbjct: 101 IHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFVSNALIHM 160
Query: 61 YVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + GFA+K+ F+ M R++ SW+ +I
Sbjct: 161 YAMCGQLGFAQKM-------------------------------FDGMLDRDLVSWNTLI 189
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y Y L+LF M + + D +T+ ++ CSHLG S +I +N
Sbjct: 190 CGYSQYNKYKEVLRLFDAMTA-ANIKADAVTMVKIILACSHLGDWEF--ADSMVKYIKEN 246
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAH----------- 228
E++ + L+DMY + + A VF+ M ERN++SW AL+ G A
Sbjct: 247 NLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKLF 306
Query: 229 ---------------RGYSE-----DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
GYS+ DA+ LF+ M A VKP+++T VL+AC H G +D
Sbjct: 307 DNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLD 366
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
G I + ++ I ++D++ K G +E+A EV M+ + + + W S ++
Sbjct: 367 VGWAVHHYI-RRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMK-DKDSVSWTSVISG 424
Query: 329 CKEHKQFDMAERVIKQALR 347
+ + A + Q LR
Sbjct: 425 LAVNGFANSALDLFSQMLR 443
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 84/367 (22%), Positives = 165/367 (44%), Gaps = 51/367 (13%)
Query: 38 LHSHILKLGFISHVYVATSLLHEYVVTSFGF--ARKLFDELPERNAVTWNTMIKGYSKSG 95
LH+H+++ + ++ + ++ Y ++S A +F+++ V WN MI+G S+S
Sbjct: 36 LHAHLIRTQLHTDPFLMSDVIRSYSLSSTNLHKAHLVFNQIECPTLVVWNHMIRGLSQSD 95
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155
+ EA + RM ++G+T + +T+ +
Sbjct: 96 HPVEAIHMYTRM--------------------------------HHQGITGNNLTLIFLF 123
Query: 156 SGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERN 215
C+ + + + G+ H +K +E ++ L+ MYA CG L +A +F+ M +R+
Sbjct: 124 KACARVSDI--VSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRD 181
Query: 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG---LVDEGRK 272
++SW LICG + ++ L LF+ M A +K + +T ++ AC H G D K
Sbjct: 182 LVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVK 241
Query: 273 YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
Y K E +LE + ++D++G+ E A V MR E N++ W + + +
Sbjct: 242 YIK----ENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMR-ERNIVSWNALVMGHAKV 296
Query: 333 KQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVR--KAR 390
A ++ P+ D +T + Y+ ++ A ++ + M+ V+ K
Sbjct: 297 GNLTAARKLFDNM-----PKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVT 351
Query: 391 GSSVISS 397
+SV+S+
Sbjct: 352 VASVLSA 358
>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 589
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 141/395 (35%), Positives = 238/395 (60%), Gaps = 6/395 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ QM Q + +S + +C N+ LHSH K GF S ++ T+LL Y
Sbjct: 69 LYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFAMTALLDMYA 128
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+ AR+LFDE+P R+ TWN++I GY++SG++ A + F +MP+RNV SW+A+I+
Sbjct: 129 KLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISG 188
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y G Y L++F + + +G P++++I +VL CS LG+ L +GK + N +
Sbjct: 189 YAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGA--LDIGKRIEAYARNNGF 246
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVF-ELMEERNVISWTALICGSAHRGYSEDALSLFE 240
N ++ +++++A+CG ++ A VF E+ +RN+ SW +I G A G DAL L++
Sbjct: 247 FKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCIDALQLYD 306
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M ++P+++TF G+L AC H G+V EGR+ F+ ++ ++ + P+++HYGC+VDL G+A
Sbjct: 307 QMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRA 366
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G L+EAY +I+ M + P+ +IWG+ L AC H ++ E V ++L ++P N G + +
Sbjct: 367 GELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGE-VAAESLFKLEPWNPGN-YVI 424
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y + W G R+RK+M ++ K G S I
Sbjct: 425 LSNIYALAGDWSGVARLRKMMKGGHITKRAGYSYI 459
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 80/352 (22%), Positives = 143/352 (40%), Gaps = 71/352 (20%)
Query: 35 IHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKS 94
+ +H++ L+ G ++ LL + +A LFD++P+ + +N I+ +S
Sbjct: 4 LKQIHAYSLRNGLDHTKFLIEKLLQ---LPDLPYACTLFDQIPKPSVYLYNKFIQTFSSI 60
Query: 95 GNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAV 154
G+ P R W L+ +M S +G +P+Q + +
Sbjct: 61 GH-----------PHR---CW-----------------LLYCQMCS-QGCSPNQYSFTFL 88
Query: 155 LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER 214
C+ L +V G+ H K+ + + T L+DMYAK G L+ A +F+ M R
Sbjct: 89 FPACASLFNV--YPGQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVR 146
Query: 215 NVISWTALICGSAHRGYSEDALSLFEMMQA------------------------------ 244
++ +W +LI G A G+ E AL LF M
Sbjct: 147 DIPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLE 206
Query: 245 --TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
G KPNE++ VL AC G +D G++ + +++L + G
Sbjct: 207 NEKGTKPNEVSIASVLPACSQLGALDIGKR-IEAYARNNGFFKNAYVSNAVLELHARCGN 265
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQAL-RMVKPEN 353
+EEA +V + + N+ W + + H + A ++ Q L R ++P++
Sbjct: 266 IEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDD 317
>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
Length = 642
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 156/428 (36%), Positives = 238/428 (55%), Gaps = 38/428 (8%)
Query: 1 MQLFSQMHRQSVP-SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+QLF +M R+SV DSFS +LK+ + LT LH + G SH++V T+L+
Sbjct: 90 LQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGLQLHCLAVGYGLDSHLFVGTTLIS 149
Query: 60 EYV-VTSFGFARKLFDEL-------------------------------PERNAVTWNTM 87
Y FARK+FDE+ P RN +WN M
Sbjct: 150 MYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEGVKDAEQVFRCMPIRNLTSWNIM 209
Query: 88 IKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD 147
+ GY+K+G + AR+ F +MPL++ SWS MI + + G ++ FRE + EG+ P+
Sbjct: 210 LAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFRE-VRREGMRPN 268
Query: 148 QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMV 207
++++ VLS C+ G+ G+ HGF+ K+ + + L+D Y+KCG L A +V
Sbjct: 269 EVSLTGVLSACAQAGAFEF--GRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLV 326
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
F+ M R+ +SWTA+I G A GY E+A+ LF M+ + +KP+ +TF +L AC H GLV
Sbjct: 327 FDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLV 386
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
D G YF + Y +EP I+HYGCMVDL+G+AG L++AY+ + M + PN I+W + L
Sbjct: 387 DLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRTLLG 446
Query: 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVR 387
AC H +A +V +Q L + PEN G L+ ++Y + KW+ +R+ M +Q ++
Sbjct: 447 ACSIHGNLYLAGQVKRQ-LSELDPENSGD-HVLLSNIYAVAGKWKDVAALRRSMTHQRLK 504
Query: 388 KARGSSVI 395
K G S+I
Sbjct: 505 KTPGWSMI 512
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 98/390 (25%), Positives = 165/390 (42%), Gaps = 59/390 (15%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT---SFGFARKLFDEL 76
LH L + +L + + + I K S+ V+ LL VT S +AR+LF ++
Sbjct: 6 LHCLALFSKCKSLRTVKQIQALIFKTCLNSYPLVSGKLLLHCAVTLPDSLHYARRLFLDI 65
Query: 77 PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA-----SWSAMIAAYLNAGAYDPG 131
+ +NT+I+G S S A F M ++VA S++ ++ A N A G
Sbjct: 66 RNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNG 125
Query: 132 LKL------------------------------FREMISNEGLTPDQMTIGAVLSGCSHL 161
L+L F + +E + P+ + A+++ C
Sbjct: 126 LQLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRC 185
Query: 162 GSVGLLMGKSAHGFI----VKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVI 217
V K A ++N N I++ Y K G L+ A VF M ++ +
Sbjct: 186 EGV-----KDAEQVFRCMPIRNLTSWN-----IMLAGYTKAGELQLAREVFMKMPLKDDV 235
Query: 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI 277
SW+ +I G AH G DA + F ++ G++PNE++ TGVL+AC G + GR +
Sbjct: 236 SWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFV 295
Query: 278 DEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDM 337
++ L+ I ++D + K G L+ A V M L + + W + +A H +
Sbjct: 296 EKSGFLQI-ISVNNALIDTYSKCGNLDMARLVFDNM-LRRSAVSWTAMIAGMAMHGYGEE 353
Query: 338 AERVIKQALRM-VKPENDGGVFTLICDLYT 366
A R+ + +KP++ T I LY
Sbjct: 354 AIRLFNEMEESNIKPDS----ITFISILYA 379
>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 147/399 (36%), Positives = 239/399 (59%), Gaps = 16/399 (4%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ ++QM Q V ++F+ ILK C + LHS +KLGF S +YV T LL
Sbjct: 113 LNFYAQMLTQGVEPNAFTFSSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDV 168
Query: 61 YV----VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
Y V S A++LFD +PE++ V+ M+ Y+K G + AR F+ M R+ W+
Sbjct: 169 YARGGDVVS---AQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWN 225
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
MI Y G + L LFR M+ + P+++T+ +VLS C LG+ L G+ H +I
Sbjct: 226 VMIDGYTQNGMPNEALVLFRRMLKAKA-KPNEVTVLSVLSACGQLGA--LESGRWVHSYI 282
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
N + N + T LVDMY+KCG L+ A +VF+ +++++V++W ++I G A G+S++AL
Sbjct: 283 ENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEAL 342
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
LF+ M G+ P +TF G+L+AC H+G V EG F + +EY +EP+I+HYGCMV+L
Sbjct: 343 QLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNL 402
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
G+AG +E+AYE+++ M +EP+ ++WG+ L AC+ H + + E++++ L + + + G
Sbjct: 403 LGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVE--LLVDQNLANSG 460
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ ++Y W+G R+R +M + V+K G S I
Sbjct: 461 TYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSI 499
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 100/206 (48%), Gaps = 14/206 (6%)
Query: 195 YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTF 254
YA G L Y++ +F + +V WTA+I G A RG E AL+ + M GV+PN TF
Sbjct: 72 YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 131
Query: 255 TGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
+ +L C ++ G+ + + + +D + ++ ++D++ + G + A ++ TM
Sbjct: 132 SSILKLCP----IEPGKALHSQAVKLGFDSDLYVR--TGLLDVYARGGDVVSAQQLFDTM 185
Query: 314 RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEG 373
E +++ + L +H + D A RV+ + E DG + ++ D YT N
Sbjct: 186 P-EKSLVSLTAMLTCYAKHGELD-AARVLFDGME----ERDGVCWNVMIDGYTQNGMPNE 239
Query: 374 AERVRKLMLNQNVRKARGSSVISSLS 399
A + + ML K +V+S LS
Sbjct: 240 ALVLFRRMLKAKA-KPNEVTVLSVLS 264
>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 147/399 (36%), Positives = 239/399 (59%), Gaps = 16/399 (4%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ ++QM Q V ++F+ ILK C + LHS +KLGF S +YV T LL
Sbjct: 60 LNFYAQMLTQGVEPNAFTFSSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDV 115
Query: 61 YV----VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
Y V S A++LFD +PE++ V+ M+ Y+K G + AR F+ M R+ W+
Sbjct: 116 YARGGDVVS---AQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWN 172
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
MI Y G + L LFR M+ + P+++T+ +VLS C LG+ L G+ H +I
Sbjct: 173 VMIDGYTQNGMPNEALVLFRRMLKAKA-KPNEVTVLSVLSACGQLGA--LESGRWVHSYI 229
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
N + N + T LVDMY+KCG L+ A +VF+ +++++V++W ++I G A G+S++AL
Sbjct: 230 ENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEAL 289
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
LF+ M G+ P +TF G+L+AC H+G V EG F + +EY +EP+I+HYGCMV+L
Sbjct: 290 QLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNL 349
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
G+AG +E+AYE+++ M +EP+ ++WG+ L AC+ H + + E++++ L + + + G
Sbjct: 350 LGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVE--LLVDQNLANSG 407
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ ++Y W+G R+R +M + V+K G S I
Sbjct: 408 TYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSI 446
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 88/175 (50%), Gaps = 13/175 (7%)
Query: 195 YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTF 254
YA G L Y++ +F + +V WTA+I G A RG E AL+ + M GV+PN TF
Sbjct: 19 YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 78
Query: 255 TGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
+ +L C ++ G+ + + + +D + ++ ++D++ + G + A ++ TM
Sbjct: 79 SSILKLCP----IEPGKALHSQAVKLGFDSDLYVRT--GLLDVYARGGDVVSAQQLFDTM 132
Query: 314 RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
E +++ + L +H + D A RV+ + E DG + ++ D YT N
Sbjct: 133 P-EKSLVSLTAMLTCYAKHGELD-AARVLFDGME----ERDGVCWNVMIDGYTQN 181
>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 585
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 143/346 (41%), Positives = 221/346 (63%), Gaps = 6/346 (1%)
Query: 51 VYVATSLLHEYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL 109
V++ +L YV ARK+FD + R+ V+WNTMI GY+ G+V AR+ F+
Sbjct: 116 VFLCNVMLAAYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRD 175
Query: 110 RNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMG 169
R+ SWS+MI+AY L+L+REM G+ PD +++ +VLS CS +G+ L +G
Sbjct: 176 RDAFSWSSMISAYAKGRCSKEALELWREM-RVAGVAPDCISMVSVLSACSAMGA--LAIG 232
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR 229
H F+ N E++ ++ T LVDMYAKCG ++ +L VF M ++V++W+++I G A+
Sbjct: 233 AEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANH 292
Query: 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQH 289
G DALSLF M + G++PNE+TF GVL AC H GLV++G+KYF + + + + PR++H
Sbjct: 293 GLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEH 352
Query: 290 YGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349
YGCMVDL G+AG +EEA E+IR+M +P+ IIW + L AC+ HK ++AE + + L+++
Sbjct: 353 YGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEAMAK-LKVL 411
Query: 350 KPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
P DG + L+ ++Y WEG +RK + +N+++ G S I
Sbjct: 412 DPLADGH-YVLLSNIYAQANSWEGVAEMRKTIRRENIQRVPGRSSI 456
>gi|347954510|gb|AEP33755.1| chloroplast biogenesis 19, partial [Olimarabidopsis pumila]
Length = 475
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 150/398 (37%), Positives = 244/398 (61%), Gaps = 12/398 (3%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHF--NNLTVIHHLHSHILKLGFI-SHVYVATSLLHE 60
F+ M V + + +L C F + T+ LH + KLG +HV V T++L
Sbjct: 34 FADMRLAGVEPTHITFIALLSGCGDFPSGSETLGDLLHGYACKLGLDRNHVMVGTAILGM 93
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y AR +FD + ++N+VTWNTMI GY +SG V A F++MP ++ SW+AM+
Sbjct: 94 YSKRGRVKKARLVFDYMDDKNSVTWNTMIDGYMRSGQVHNAVKLFDKMPEPDLISWTAMV 153
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
++ G ++ L FREM G+ PD + I A L+ C++LG++ L G H +++
Sbjct: 154 NGFVKKGFHEEALVWFREM-QISGVKPDYVAIIAALNACTNLGALSL--GLWVHRYVMSQ 210
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+++ N +++ L+D+Y +CG +++A VF+ ME+R V+SW ++I G A G + ++L F
Sbjct: 211 DFKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYF 270
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MQ G KPN +TFTG LTAC H GLVDEG ++F+ + +Y++ PRI+HYGC+VDL+ +
Sbjct: 271 RKMQEEGFKPNAVTFTGALTACSHVGLVDEGLRFFQSMKRDYNISPRIEHYGCLVDLYSR 330
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFD-MAERVIKQALRM-VKPENDGGV 357
AG LE+A +V+++M ++PN ++ GS LAAC+ H +AER++K + VK ++
Sbjct: 331 AGRLEDALKVVQSMPMKPNEVVIGSLLAACRNHGNNTVLAERLMKHLSDLNVKSHSN--- 387
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++ ++Y + KWEGA R+R+ M ++K G S I
Sbjct: 388 YVILSNMYAADAKWEGASRMRRKMKGLGLKKQPGFSSI 425
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 142/396 (35%), Positives = 243/396 (61%), Gaps = 10/396 (2%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF +M ++ V +S +++ +L +C+ +L H++ +I G + + ++L +
Sbjct: 195 LFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYI-NGGIVERNLILENVLIDMF 253
Query: 63 VT--SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
A+ +FD + R+ ++W +++ G++ G + AR +F+++P R+ SW+AMI
Sbjct: 254 AACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMID 313
Query: 121 AYLNAGAYDPGLKLFREM-ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
YL + L LFREM +SN + PD+ T+ ++L+ C+HLG++ L G+ +I KN
Sbjct: 314 GYLRMNRFIEALALFREMQMSN--VKPDEFTMVSILTACAHLGALEL--GEWVKTYIDKN 369
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + + L+DMY KCG + A VF+ M ++ +WTA+I G A G+ E+AL++F
Sbjct: 370 SIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMF 429
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M + P+E+T+ GVL AC H G+V++G+ +F + ++ ++P + HYGCMVDL G+
Sbjct: 430 SNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGR 489
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG LEEA+EVI M ++PN I+WGS L AC+ HK +AE KQ L + +PEN G V+
Sbjct: 490 AGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILEL-EPEN-GAVYV 547
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+C++Y ++WE +VRKLM+ + ++K G S++
Sbjct: 548 LLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLM 583
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 153/345 (44%), Gaps = 67/345 (19%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ ++ M ++ D F+ +LK T L L +H +K GF S+++V + +H
Sbjct: 92 VSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHM 151
Query: 61 YVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
+ + ARK+FD VTWN M+ GY++ +++ F M R
Sbjct: 152 FSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKR--------- 202
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
G++P+ +T+ +LS CS L L GK + +I
Sbjct: 203 -----------------------GVSPNSVTLVLMLSACSKLKD--LEGGKHIYKYINGG 237
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE------ 233
E N + +L+DM+A CG + A VF+ M+ R+VISWT+++ G A+ G +
Sbjct: 238 IVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYF 297
Query: 234 -------------------------DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
+AL+LF MQ + VKP+E T +LTAC H G ++
Sbjct: 298 DQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALE 357
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
G ++ K ++ ++ ++D++ K G + +A +V + M
Sbjct: 358 LG-EWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEM 401
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 91/374 (24%), Positives = 160/374 (42%), Gaps = 49/374 (13%)
Query: 18 SILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFD 74
S + +L+ C L IH SH +K+G S ++ G +AR++FD
Sbjct: 9 SPISLLEKCKSMYQLKQIH---SHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFD 65
Query: 75 ELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKL 134
+P+ WNTMIKGYS+ + P V+ + M+A+
Sbjct: 66 AIPQPTLFIWNTMIKGYSRINH-----------PQNGVSMYLLMLAS------------- 101
Query: 135 FREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDM 194
+ PD+ T +L G + ++ L GK VK+ ++ N + + M
Sbjct: 102 --------NIKPDRFTFPFLLKGFTR--NMALQYGKVLLNHAVKHGFDSNLFVQKAFIHM 151
Query: 195 YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTF 254
++ C + A VF++ + V++W ++ G + + LF M+ GV PN +T
Sbjct: 152 FSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTL 211
Query: 255 TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR 314
+L+AC ++ G+ +K I+ +E + ++D+F G ++EA V M+
Sbjct: 212 VLMLSACSKLKDLEGGKHIYKYINGGI-VERNLILENVLIDMFAACGEMDEAQSVFDNMK 270
Query: 315 LEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY-TMNEKWEG 373
+VI W S + Q D+A + Q PE D +T + D Y MN E
Sbjct: 271 -NRDVISWTSIVTGFANIGQIDLARKYFDQI-----PERDYVSWTAMIDGYLRMNRFIEA 324
Query: 374 AERVRKLMLNQNVR 387
R++ ++ NV+
Sbjct: 325 LALFREMQMS-NVK 337
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 10/182 (5%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF +M +V D F+++ IL +C H L + + ++I K + +V +L+
Sbjct: 325 LALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDM 384
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA----SW 115
Y + G A+K+F E+ ++ TW MI G + +G+ EA F M ++ ++
Sbjct: 385 YFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITY 444
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
++ A +AG + G F M G+ P+ G ++ LG G L + AH
Sbjct: 445 IGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMV---DLLGRAGRL--EEAHEV 499
Query: 176 IV 177
IV
Sbjct: 500 IV 501
>gi|115477124|ref|NP_001062158.1| Os08g0500600 [Oryza sativa Japonica Group]
gi|42407356|dbj|BAD08817.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|42407750|dbj|BAD08896.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113624127|dbj|BAF24072.1| Os08g0500600 [Oryza sativa Japonica Group]
Length = 429
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 137/323 (42%), Positives = 206/323 (63%), Gaps = 4/323 (1%)
Query: 68 FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
ARK+FDE+P RN V+WN M++GYS + ++ AR+ F+ MP ++V SW+ MI+ Y AG
Sbjct: 106 LARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGR 165
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ- 186
Y L+LFR M + + P+++T+ +VLS C++L L G+ H FI K++ LN +
Sbjct: 166 YQDTLELFRAMQTESNVQPNEVTMVSVLSACANL--TALEEGRWVHAFIDKHKMVLNNEY 223
Query: 187 -IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
+ L+DMYAKCG A+ +F ++ +NV +W ALI A G + D++ FE M+ T
Sbjct: 224 NLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRT 283
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305
G KPN++TF GVLTAC H GLVDEGR+ F+ + ++P ++HYGCMVD+ G+AG LEE
Sbjct: 284 GEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEE 343
Query: 306 AYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365
A E+IR+M + P+V+++G+ L AC+ HK+FD+AERV + + G LI D+Y
Sbjct: 344 AEELIRSMPMAPDVMVFGALLGACRMHKRFDVAERVQSEIHSLNLNAQQSGCHVLISDIY 403
Query: 366 TMNEKWEGAERVRKLMLNQNVRK 388
KW R+++ +RK
Sbjct: 404 AAAGKWFDVLEARQVVQRSGIRK 426
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 133/268 (49%), Gaps = 59/268 (22%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL--RNVASWSAMIAAYLNAG 126
A+++FDE+P RN V+W+TM+ GY+ +G + AR+ F+RMP RNV +W++M+ + G
Sbjct: 43 AKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGRNVVTWNSMVTGFARHG 102
Query: 127 AYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ 186
K+F D+M + ++S + L G+ V ++
Sbjct: 103 LLPLARKMF-----------DEMPVRNLVSWNAML-----------RGYSVNSD------ 134
Query: 187 IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQA-T 245
+ A +F++M E++V+SWT +I G A G +D L LF MQ +
Sbjct: 135 --------------MDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTES 180
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGR-------KYFKMIDEEYDLEPRIQHYGCMVDLFG 298
V+PNE+T VL+AC + ++EGR K+ +++ EY+L ++D++
Sbjct: 181 NVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLG------AALIDMYA 234
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
K G + A ++ ++ NV W + +
Sbjct: 235 KCGRTDIAVKIFNSLD-RKNVSAWNALI 261
>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
Length = 671
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 149/396 (37%), Positives = 231/396 (58%), Gaps = 6/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+ M + + D + ++K+C + +H+H++K GF Y+ +SL+H
Sbjct: 151 LPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHL 210
Query: 61 YVV-TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y G A++LF+ R+ V+WN MI GY K + AR F+RM R+V SW+ MI
Sbjct: 211 YANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMI 270
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y G + L LF +M + G+ P + T+ ++LS C+HLG+ L G H +I N
Sbjct: 271 NGYAICGKPNEALALFDQMRA-VGVKPTEATVVSLLSACAHLGA--LDKGLHLHTYINDN 327
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
E+N + T LVDMYAKCG + A VF ME ++V++W +I G A G ++A LF
Sbjct: 328 RIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLF 387
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+ M+ GV+PN++TF +L+AC H G+VDEG+K + Y +EP+++HYGC++DL +
Sbjct: 388 KEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLAR 447
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AGFLEEA E+I TM +EPN G+ L C+ H F++ E V K+ + + +P + G +
Sbjct: 448 AGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINL-QPCHSGR-YI 505
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y +KW+ A +VR LM + K G SVI
Sbjct: 506 LLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVI 541
>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 150/398 (37%), Positives = 233/398 (58%), Gaps = 5/398 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF +M R++V +S +++ +L +C +L + S+I + G + + ++L
Sbjct: 212 LELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDM 271
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y S A+KLFDE+PER+ +W M+ GY+K G+ AR F MP++ +A+W+ +I
Sbjct: 272 YTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLI 331
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+AY G L +F E+ ++ PD++T+ + LS C+ LG++ L G H +I +
Sbjct: 332 SAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDL--GGWIHVYIKRE 389
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
LN + + LVDMYAKCG L+ AL VF +EER+V W+A+I G G + A+ LF
Sbjct: 390 GIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLF 449
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MQ VKPN +TFT VL AC H GLVDEGR +F ++ Y + P ++HY CMVD+ G+
Sbjct: 450 FEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGR 509
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AGFLEEA E+I M P+ +WG+ L AC H ++ E Q L++ +P N G +
Sbjct: 510 AGFLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKL-EPRNHGAI-V 567
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
L+ ++Y +WE +RKLM + ++K G S I +
Sbjct: 568 LLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEA 605
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/384 (24%), Positives = 169/384 (44%), Gaps = 46/384 (11%)
Query: 19 ILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDE 75
IL + C+ L +H+ +L+ G + A+ L ++SF +AR LFD+
Sbjct: 28 ILSTIDKCSSSKQLK---EVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQ 84
Query: 76 LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF 135
+P+ N TWNT+I+ Y+ S + P ++ +F
Sbjct: 85 IPQPNLYTWNTLIRAYASSSD-----------PFQSFV--------------------IF 113
Query: 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY 195
+++ P++ T V+ S L + + G + HG +K + ++ I LV Y
Sbjct: 114 LDLLDKCEDLPNKFTFPFVIKAASELKASRV--GTAVHGMAIKLSFGMDLYILNSLVRFY 171
Query: 196 AKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT 255
CG L A +F+ + ++V+SW ++I A EDAL LF M+ V PN +T
Sbjct: 172 GACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMV 231
Query: 256 GVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRL 315
GVL+AC ++ GR I E ++ + M+D++ K G +++A ++ M
Sbjct: 232 GVLSACAKKLDLEFGRWVCSYI-ERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMP- 289
Query: 316 EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAE 375
E +V W L + +D A R++ A+ P + + ++ Y N K + A
Sbjct: 290 ERDVFSWTIMLDGYAKMGDYD-AARLVFNAM----PVKEIAAWNVLISAYEQNGKPKEAL 344
Query: 376 RVRKLMLNQNVRKARGSSVISSLS 399
+ + + K +++S+LS
Sbjct: 345 AIFNELQLSKIAKPDEVTLVSTLS 368
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 153/345 (44%), Gaps = 27/345 (7%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLF 73
+ F+ ++K+ + V +H +KL F +Y+ SL+ Y A +LF
Sbjct: 125 NKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLF 184
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
+ ++ V+WN+MI +++ +A + F +M NV S + L+A A L+
Sbjct: 185 KGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLE 244
Query: 134 LFR---EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA-- 188
R I +G+ D A+L + GSV A E+ E+
Sbjct: 245 FGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSV-----DDAQKLFD----EMPERDVFS 295
Query: 189 -TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
TI++D YAK G A +VF M + + +W LI G ++AL++F +Q + +
Sbjct: 296 WTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKI 355
Query: 248 -KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
KP+E+T L+AC G +D G I E + +VD++ K G LE+A
Sbjct: 356 AKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKRE-GIVLNCHLISSLVDMYAKCGSLEKA 414
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQ--------FDMAERVIK 343
EV ++ E +V +W + +A H + F+M E +K
Sbjct: 415 LEVFYSVE-ERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVK 458
>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 145/397 (36%), Positives = 234/397 (58%), Gaps = 5/397 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++ FS M + S+ + + +KSC+ +L H L GF ++V+++L+
Sbjct: 61 LRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDM 120
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y AR LFDE+ RN V+W +MI GY ++ + A F+ M R+V SW+++I
Sbjct: 121 YSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSII 180
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A Y G +++F M+ + + + +T+ AVL C+H GS L GK H ++K
Sbjct: 181 AVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRL--GKCIHDQVIKM 238
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
E N + T ++DMY KCG ++ A F+ M E+NV SW+A++ G G++++AL +F
Sbjct: 239 GLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVF 298
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M GVKPN +TF VL AC H GL++EG +FK + E+D+EP ++HYGCMVDL G+
Sbjct: 299 YEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGR 358
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG+L+EA+++I+ M+L P+ ++WG+ L AC+ HK D+ E + + L + P+N G +
Sbjct: 359 AGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGE-ISARKLFELDPKN-CGYYV 416
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
L+ ++Y +WE ER+R LM N + K G S++
Sbjct: 417 LLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVD 453
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/319 (25%), Positives = 134/319 (42%), Gaps = 76/319 (23%)
Query: 72 LFDELPER-NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDP 130
LF++ ++ N +WN++I ++SG+ EA F M
Sbjct: 31 LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSM----------------------- 67
Query: 131 GLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATI 190
R++ L P++ T + CS L + L G+ AH + +E + +++
Sbjct: 68 -----RKL----SLKPNRSTFPCAIKSCSAL--LDLHSGRQAHQQALIFGFEPDLFVSSA 116
Query: 191 LVDMYAKCGFLKYALMVFELMEERNVISWTALICG-----SAHR---------------- 229
LVDMY+KCG L+ A +F+ + RN++SWT++I G AHR
Sbjct: 117 LVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISW 176
Query: 230 ----------GYSEDALSLFEMMQATG-VKPNEMTFTGVLTACVHTGLVDEGRKYFKMID 278
G S +++ +F M G + N +T + VL AC H+G G+ +
Sbjct: 177 NSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQV- 235
Query: 279 EEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
+ LE + ++D++ K G +E A + MR E NV W + +A H
Sbjct: 236 IKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMR-EKNVKSWSAMVAGYGMHGH---- 290
Query: 339 ERVIKQALRMVKPENDGGV 357
K+AL + N GV
Sbjct: 291 ---AKEALEVFYEMNMAGV 306
>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 144/396 (36%), Positives = 241/396 (60%), Gaps = 7/396 (1%)
Query: 2 QLFSQMHRQS-VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
Q+ H ++ + D F+ ++KSC + +H H+ K G S+ V SL+
Sbjct: 102 QMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEM 161
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
YV S A K+F+E+ ER+AV+WNT+I G+ + G + AR FE M + + SW+A++
Sbjct: 162 YVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIV 221
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y G Y L+ FR M G+ PD++++ +VL C+ LG++ L GK H + K
Sbjct: 222 SGYARIGCYADALEFFRRM-QMVGIEPDEISLVSVLPACAQLGALEL--GKWIHFYADKA 278
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ N + L++MYAKCG + +F+ M ER+VISW+ +I G A+ G + +A+ LF
Sbjct: 279 GFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELF 338
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+ MQ ++PN +TF G+L+AC H GL++EG +YF+ + +Y++EP ++HYGC+V+L G
Sbjct: 339 QEMQKAKIEPNIITFVGLLSACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGL 398
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
+G L++A E+I+ M ++P+ IWGS L++C+ H ++A ++ L + +P D G +
Sbjct: 399 SGRLDQALELIKKMPMKPDSAIWGSLLSSCRSHSNLEIAVIAMEHLLEL-EPA-DTGNYV 456
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ +LY KW+G R+RKLM +++++K G S I
Sbjct: 457 LLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSI 492
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/378 (22%), Positives = 154/378 (40%), Gaps = 81/378 (21%)
Query: 22 ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL---HEYVVTSFGFARKLFDELPE 78
ILK+C N+ + +H+HI+K ++ T ++ + + T + A LF + +
Sbjct: 20 ILKNCP---NIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHHAETEY--ANLLFKRVAD 74
Query: 79 RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM 138
NA +N AMI AY + Y + ++++M
Sbjct: 75 PNAFLYN-------------------------------AMIRAYKHNKVYVLAITVYKQM 103
Query: 139 ISN----EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDM 194
+ + + PD+ T V+ C+ L L GK HG + K + N + LV+M
Sbjct: 104 LGHSHGENPIFPDKFTFPFVVKSCAGLMCYDL--GKQVHGHVFKFGQKSNTVVENSLVEM 161
Query: 195 YAKC-------------------------------GFLKYALMVFELMEERNVISWTALI 223
Y KC G ++ A +FE M+++ + SWTA++
Sbjct: 162 YVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIV 221
Query: 224 CGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDL 283
G A G DAL F MQ G++P+E++ VL AC G ++ G K+ ++
Sbjct: 222 SGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELG-KWIHFYADKAGF 280
Query: 284 EPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIK 343
I +++++ K G ++E + M E +VI W + + H + A I+
Sbjct: 281 LRNICVCNALIEMYAKCGSIDEGRRLFDQMN-ERDVISWSTMIVGLANHGR---AHEAIE 336
Query: 344 QALRMVKPENDGGVFTLI 361
M K + + + T +
Sbjct: 337 LFQEMQKAKIEPNIITFV 354
>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 762
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 139/334 (41%), Positives = 209/334 (62%), Gaps = 5/334 (1%)
Query: 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+V A++LFDE+PERN V+WN+M+ G+ K GNV +A F MP R+V SW++M+A
Sbjct: 304 IVGKIDEAKRLFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLAC 363
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y G + L LF +M + G+ P + T+ ++LS C+HLG+ L G H +I N
Sbjct: 364 YAQCGKPNEALALFDQMRA-VGVKPTEATVVSLLSACAHLGA--LDKGLHLHTYINDNRI 420
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
E+N + T LVDMYAKCG + A VF ME ++V++W +I G A G ++A LF+
Sbjct: 421 EVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKE 480
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M+ GV+PN++TF +L+AC H G+VDEG+K + Y +EP+++HYGC++DL +AG
Sbjct: 481 MKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAG 540
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
FLEEA E+I TM +EPN G+ L C+ H F++ E V K+ + + +P + G + L+
Sbjct: 541 FLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINL-QPCHSGR-YILL 598
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y +KW+ A +VR LM + K G SVI
Sbjct: 599 SNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVI 632
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 101/230 (43%), Gaps = 29/230 (12%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF QM V +++ +L +C H L HLH++I + V T+L+
Sbjct: 374 LALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDM 433
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA----SW 115
Y A ++F+ + ++ + WNT+I G + GNV EA+ F+ M V ++
Sbjct: 434 YAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITF 493
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLG------------- 162
A+++A +AG D G KL M S+ G+ P G V+ + G
Sbjct: 494 VAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMP 553
Query: 163 ------SVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
++G L+G G + +EL E + L+++ C +Y L+
Sbjct: 554 MEPNPSALGALLG----GCRIHGNFELGEMVGKRLINL-QPCHSGRYILL 598
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 105/230 (45%), Gaps = 17/230 (7%)
Query: 100 ARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGC- 158
A+ F + + ++++I A ++ L L+ M+ + GL PD MT V+ C
Sbjct: 148 AKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQS-GLKPDHMTYPFVIKACN 206
Query: 159 -SHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVI 217
S + GLL+ H +VK+ +E + I + L+ +YA L A +F L R+V+
Sbjct: 207 ESSVTWFGLLV----HTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVV 262
Query: 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI 277
SW A+I G A +F+ M V +++ ++ G +DE ++ F +
Sbjct: 263 SWNAMIDGYVKHVEMGHARMVFDRMVCRDV----ISWNTMINGYAIVGKIDEAKRLFDEM 318
Query: 278 DEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
E + + M+ F K G +E+A+ + M +V+ W S LA
Sbjct: 319 PER-----NLVSWNSMLAGFVKCGNVEDAFGLFSEMPCR-DVVSWNSMLA 362
>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
Length = 2355
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 152/413 (36%), Positives = 233/413 (56%), Gaps = 36/413 (8%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY------------- 61
D ++ +LK+C + +H + K G S+++V SL+ Y
Sbjct: 126 DEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLF 185
Query: 62 -------------VVTSFGF------ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARD 102
+++ + F AR +FD + E+N V+W+TMI GY++ GN+ EAR
Sbjct: 186 DEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQ 245
Query: 103 FFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLG 162
FE MP+RNV SW+AMIA Y Y ++LFR+M GL P+ +T+ +VLS C+HLG
Sbjct: 246 LFENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLG 305
Query: 163 SVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTAL 222
++ L GK H FI +N+ E+ + L DMYAKCG + A VF M ER+VISW+ +
Sbjct: 306 ALDL--GKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSII 363
Query: 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD 282
I G A GY+ +A + F M G++PN+++F G+LTAC H GLVD+G +YF M+ + Y
Sbjct: 364 IMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYG 423
Query: 283 LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVI 342
+ P+I+HYGC+VDL +AG L++A +I +M ++PNVI+WG+ L C+ +K + ERV+
Sbjct: 424 ITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVV 483
Query: 343 KQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L + N G + ++Y + + A R M + K G S I
Sbjct: 484 WRILEL--DSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWI 534
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 86/192 (44%), Gaps = 19/192 (9%)
Query: 153 AVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI-------------ATILVDMYAKCG 199
AVL +H ++ LL+ + A ++ +E+ QI A + + + G
Sbjct: 14 AVLHDYNHRKTIHLLL-RCATQLSMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHG 72
Query: 200 FLKYALMVFE-LMEERNVISWTALICGSAHRGYSEDALSLF--EMMQATGVKPNEMTFTG 256
L++++++F + N+ ++ AL+ + +S F +++ P+E TFT
Sbjct: 73 NLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTS 132
Query: 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE 316
VL AC V EG+K + +Y E + +VDL+ K G A ++ M +
Sbjct: 133 VLKACAGLAQVLEGQKVHCFV-TKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVR 191
Query: 317 PNVIIWGSFLAA 328
+V+ W + ++
Sbjct: 192 -DVVSWNTLISG 202
>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 512
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 140/395 (35%), Positives = 238/395 (60%), Gaps = 6/395 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ QM Q + +S + +C N+ LHSH K GF S ++ T+LL Y
Sbjct: 69 LYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFAMTALLDMYA 128
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+ AR+LFDE+P R+ TWN++I GY++SG++ A + F +MP+RNV SW+A+I+
Sbjct: 129 KLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISG 188
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y G Y L++F + + +G P++++I +VL CS LG++ + GK + N +
Sbjct: 189 YAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDI--GKRIEAYARNNGF 246
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVF-ELMEERNVISWTALICGSAHRGYSEDALSLFE 240
N ++ +++++A+CG ++ A VF E+ +RN+ SW +I G A G DAL L++
Sbjct: 247 FKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCIDALQLYD 306
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M ++P+++TF G+L AC H G+V EGR+ F+ ++ ++ + P+++HYGC+VDL G+A
Sbjct: 307 QMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRA 366
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G L+EAY +I+ M + P+ +IWG+ L AC H ++ E V ++L ++P N G + +
Sbjct: 367 GELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGE-VAAESLFKLEPWNPGN-YVI 424
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y + W G R+RK+M ++ K G S I
Sbjct: 425 LSNIYALAGDWSGVARLRKMMKGGHITKRAGYSYI 459
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 145/332 (43%), Gaps = 25/332 (7%)
Query: 32 LTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPERNAVTWNTMIKGY 91
+ + +H++ L+ G ++ LL + +A LFD++P+ + +N I+ +
Sbjct: 1 MNQLKQIHAYSLRNGLDHTKFLIEKLLQ---LPDLPYACTLFDQIPKPSVYLYNKFIQTF 57
Query: 92 SKSGNVCEARDFFERMPLR----NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD 147
S G+ + +M + N S++ + A + PG ++ G D
Sbjct: 58 SSIGHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPG-QMLHSHFCKSGFASD 116
Query: 148 QMTIGAVLSGCSHLGSVGLLMGKSAHGFI----VKNEWELNEQIATILVDMYAKCGFLKY 203
+ A+L + LG M +SA V++ N IA YA+ G ++
Sbjct: 117 MFAMTALLDMYAKLG-----MLRSARQLFDEMPVRDIPTWNSLIAG-----YARSGHMEA 166
Query: 204 ALMVFELMEERNVISWTALICGSAHRGYSEDALSLF-EMMQATGVKPNEMTFTGVLTACV 262
AL +F M RNVISWTALI G A G AL +F + G KPNE++ VL AC
Sbjct: 167 ALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACS 226
Query: 263 HTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
G +D G++ + +++L + G +EEA +V + + N+ W
Sbjct: 227 QLGALDIGKR-IEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSW 285
Query: 323 GSFLAACKEHKQFDMAERVIKQAL-RMVKPEN 353
+ + H + A ++ Q L R ++P++
Sbjct: 286 NTMIMGLAVHGRCIDALQLYDQMLIRKMRPDD 317
>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 566
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 145/396 (36%), Positives = 238/396 (60%), Gaps = 6/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F M V D+ +++ ++ +CT V + +I + VY+ +L+
Sbjct: 163 LGVFEAMRVAGVKGDAVTMVKVVLACTSLGEWGVADAMVDYIEENNVEIDVYLGNTLIDM 222
Query: 61 YVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y AR +FD++ RN V+WN MI GY K+GN+ AR+ F+ M R+V SW+ MI
Sbjct: 223 YGRRGLVHLARGVFDQMQWRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMI 282
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+Y AG + L+LF+EM+ ++ + PD++T+ +VLS C+H GS L +G++AH +I K
Sbjct: 283 TSYSQAGQFTEALRLFKEMMESK-VKPDEITVASVLSACAHTGS--LDVGEAAHDYIQKY 339
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + + + L+DMY KCG ++ AL VF+ M +++ +SWT++I G A G+++ AL F
Sbjct: 340 DVKADIYVGNALIDMYCKCGVVEKALEVFKEMRKKDSVSWTSIISGLAVNGFADSALDYF 399
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M V+P+ F G+L AC H GLVD+G +YF+ +++ Y L+P ++HYGC+VDL +
Sbjct: 400 SRMLREVVQPSHGAFVGILLACAHAGLVDKGLEYFESMEKVYGLKPEMKHYGCVVDLLSR 459
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
+G L+ A+E I+ M + P+V+IW L+A + H +AE K+ L + P N G +
Sbjct: 460 SGNLQRAFEFIKEMPVTPDVVIWRILLSASQVHGNIPLAEIATKKLLEL-DPSNSGN-YV 517
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L + Y + +WE A ++R+LM NV+K GSS I
Sbjct: 518 LSSNTYAGSNRWEDAVKMRELMEKSNVQKPSGSSCI 553
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 108/394 (27%), Positives = 191/394 (48%), Gaps = 69/394 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+++++ M+RQ + ++ + L + K+C +++ +H+ +LKLGF SH+YV+ +L++
Sbjct: 62 IRMYNLMYRQGLLGNNLTYLFLFKACARVPDVSCGSTIHARVLKLGFESHLYVSNALINM 121
Query: 61 Y-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y G A+K+FDE+PER+ V+WN+++ GY + E FE M +
Sbjct: 122 YGSCGHLGLAQKVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRV---------- 171
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
G+ D +T+ V+ C+ LG G+ + +I +N
Sbjct: 172 ----------------------AGVKGDAVTMVKVVLACTSLGEWGV--ADAMVDYIEEN 207
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRG--------- 230
E++ + L+DMY + G + A VF+ M+ RN++SW A+I G G
Sbjct: 208 NVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWNAMIMGYGKAGNLVAARELF 267
Query: 231 -----------------YSE-----DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
YS+ +AL LF+ M + VKP+E+T VL+AC HTG +D
Sbjct: 268 DAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEITVASVLSACAHTGSLD 327
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
G I ++YD++ I ++D++ K G +E+A EV + MR + + + W S ++
Sbjct: 328 VGEAAHDYI-QKYDVKADIYVGNALIDMYCKCGVVEKALEVFKEMR-KKDSVSWTSIISG 385
Query: 329 CKEHKQFDMAERVIKQALR-MVKPENDGGVFTLI 361
+ D A + LR +V+P + V L+
Sbjct: 386 LAVNGFADSALDYFSRMLREVVQPSHGAFVGILL 419
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 138/287 (48%), Gaps = 22/287 (7%)
Query: 86 TMIKGYSKS-GNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
+IK Y+ S + +A + F+++ + W+ MI + + + ++++ ++ +GL
Sbjct: 15 NLIKSYALSPSTILKAHNLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRMY-NLMYRQGL 73
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
+ +T + C+ + V G + H ++K +E + ++ L++MY CG L A
Sbjct: 74 LGNNLTYLFLFKACARVPDVSC--GSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLA 131
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
VF+ M ER+++SW +L+CG + L +FE M+ GVK + +T V+ AC
Sbjct: 132 QKVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSL 191
Query: 265 GLVDEGRKYFKMID--EEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
G E M+D EE ++E + ++D++G+ G + A V M+ N++ W
Sbjct: 192 G---EWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWR-NLVSW 247
Query: 323 GSF---------LAACKEHKQFD-MAERVIKQALRMVKPENDGGVFT 359
+ L A +E FD M++R + M+ + G FT
Sbjct: 248 NAMIMGYGKAGNLVAARE--LFDAMSQRDVISWTNMITSYSQAGQFT 292
>gi|224064340|ref|XP_002301427.1| predicted protein [Populus trichocarpa]
gi|222843153|gb|EEE80700.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 240/391 (61%), Gaps = 6/391 (1%)
Query: 7 MHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTS 65
M + P + + + +C F +L +H+H +K GF VY T+L+ Y +
Sbjct: 1 MLLKGCPPNELTFTFLFPACASFYSLLHGKVIHTHFIKSGFDFDVYALTALVDMYAKLGV 60
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
AR++FDE+ R+ TWN++I GYS+SG++ A + F+ MP R+V SW+ MI+ Y
Sbjct: 61 LMLARQVFDEMTVRDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQN 120
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
G Y L++F +M ++ + P+++TI +V S C+ LG+ L +G+ + N N
Sbjct: 121 GMYTKALEMFLKMEKDKEVRPNEVTIASVFSACAKLGA--LEVGERIESYARDNGLMKNL 178
Query: 186 QIATILVDMYAKCGFLKYALMVF-ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQA 244
++ L++MYA+CG + A VF E+ + RN+ SW +++ G A G S +AL L++ M
Sbjct: 179 YVSNTLLEMYARCGKIDAARHVFNEIGKRRNLCSWNSMMMGLAVHGRSNEALQLYDQMLG 238
Query: 245 TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLE 304
G++P+++TF G++ AC H GLV +G + F+ ++ + + P+++HYGCMVDL G+AG L+
Sbjct: 239 EGIEPDDVTFVGLILACTHGGLVAKGWQLFQSMETNFSIVPKLEHYGCMVDLLGRAGELQ 298
Query: 305 EAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDL 364
EAY+++++M ++P+ +IWG+ L AC H + AE + ++L V+P N G + ++C++
Sbjct: 299 EAYDLVKSMPMKPDSVIWGTLLGACSFHSNVEFAE-IAAESLFQVEPWNPGN-YVILCNI 356
Query: 365 YTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
Y ++W+G ++RKLM + KA G SVI
Sbjct: 357 YASAQRWDGVAKLRKLMKGGQITKAAGYSVI 387
>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
Length = 1221
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 150/427 (35%), Positives = 240/427 (56%), Gaps = 39/427 (9%)
Query: 3 LFSQMHRQS-VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+F +M R+ + DSFS ++K+ +F +L +H LK G SH++VAT+L+ Y
Sbjct: 259 VFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMHCQALKHGLDSHLFVATTLIGMY 318
Query: 62 -VVTSFGFARKLFDELPE-------------------------------RNAVTWNTMIK 89
GFARK+FDE+P+ RN +WN M+
Sbjct: 319 GECGCVGFARKVFDEMPQPNLVAWNAVVTACFRGNDVSGAREIFDKMLVRNHTSWNVMLA 378
Query: 90 GYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQM 149
GY K+G + A+ F MP R+ SWS MI + + G+++ FRE++ E + P+++
Sbjct: 379 GYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYFRELLRAE-MRPNEV 437
Query: 150 TIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFE 209
++ VLS CS G+ GK+ HGF+ K+ + + L+DMY++CG + A +VFE
Sbjct: 438 SLTGVLSACSQSGA--FEFGKTLHGFVEKSGYSWIVSVNNALIDMYSRCGNVPMARLVFE 495
Query: 210 LMEE-RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
M+E R+++SWT++I G A G+ E+A+ +F M +GV P+E++F +L AC H GL+
Sbjct: 496 GMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFISLLYACSHAGLIK 555
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
EG YF + Y +EP ++HYGCMVDL+G++G L++AY I M + P I+W + L A
Sbjct: 556 EGEGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFICQMPIPPTAIVWRTLLGA 615
Query: 329 CKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRK 388
C H ++AE+V KQ L + P N G + L+ ++Y KW+ +RK M+ Q ++K
Sbjct: 616 CSSHGNIELAEQV-KQRLNELDPNNSGDL-VLLSNVYATAGKWKDVASIRKSMIVQRIKK 673
Query: 389 ARGSSVI 395
S++
Sbjct: 674 ITAWSLV 680
>gi|347954492|gb|AEP33746.1| chloroplast biogenesis 19, partial [Barbarea verna]
Length = 494
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 149/398 (37%), Positives = 243/398 (61%), Gaps = 12/398 (3%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLT--VIHHLHSHILKLGFI-SHVYVATSLLHE 60
FS M V + + + +L C ++ + + LH + KLG +HV V T++L
Sbjct: 53 FSSMRLAGVEPNHITFIALLSGCGDVSSGSEALGDLLHGYACKLGLDRTHVMVGTAILGM 112
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y FG AR +FD + ++N+VTWNTMI GY +SG V A F+ MP R++ SW+AMI
Sbjct: 113 YSKRGRFGKARLVFDFMEDKNSVTWNTMIDGYMRSGQVNNAVKLFDEMPERDLISWTAMI 172
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
++ G ++ L FREM G+ PD + I A L+ C+HLG+ L G H +++
Sbjct: 173 NGFVKKGFHEEALAWFREM-QISGVKPDYVAIIAALAACTHLGA--LSFGLWVHRYVMNQ 229
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+++ N +++ L+D+Y +CG +++A VF+ ME+R V+SW ++I G A G + ++L F
Sbjct: 230 DFKNNIRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYF 289
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MQ G KP+ +TFTG LTAC H GLV+EG +YF+ + ++ + PRI+HYGC+VDL+ +
Sbjct: 290 RKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSR 349
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFD-MAERVIKQALRM-VKPENDGGV 357
AG LE+A V+++M ++PN ++ GS LAAC+ H +AER++K + VK ++
Sbjct: 350 AGRLEDALNVVQSMPMKPNEVVIGSLLAACRNHGNNTVLAERLVKHLSDLNVKSHSN--- 406
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++ ++Y + WEGA ++R+ M ++K G S +
Sbjct: 407 YVILSNMYAADGIWEGASKMRRKMKGLGLKKQPGFSSV 444
>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 657
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 146/394 (37%), Positives = 228/394 (57%), Gaps = 6/394 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY- 61
LF +M Q + +D F+++ +L +C+ NL V +H H+L G + +LL Y
Sbjct: 202 LFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRILGNALLDMYG 261
Query: 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
A + FD +P +N VTW +M+ +K G+V RD+FE+MP RN+ SW+AMI+
Sbjct: 262 KCGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERNIVSWNAMISC 321
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ G L L+ M S G+TPD+ T+ VLS C G L GK H ++ N
Sbjct: 322 YVQCGRLHETLDLYNRMRS-LGITPDEFTLAGVLSACGQNGD--LASGKMIHCYVRDNFN 378
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ + L+DMYA+CG + A+ +F M +NVISW +I A G +++ ++ F
Sbjct: 379 DPGVTLLNSLLDMYARCGQVDTAIGLFTEMPNKNVISWNVIIGALAMHGRAQETVTFFRT 438
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M + P+E+TF G+L+AC H GL++ G YF+ + Y++EP ++HYGCMVDL G+ G
Sbjct: 439 MVSDAFSPDEITFVGLLSACSHGGLLEAGEYYFEAMARVYNVEPEVEHYGCMVDLLGRRG 498
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L +A +I+ M ++P+V++WG+ L AC+ H ++ + VIKQ L + GG+F LI
Sbjct: 499 HLAKAVNLIKDMSIKPDVVVWGALLGACRIHGNVEIGKLVIKQLLELEGIT--GGLFVLI 556
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
C+L+ +WE +++RKLM Q +K G S I
Sbjct: 557 CNLFYETNQWEDMKKLRKLMKEQGTKKDMGVSSI 590
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 95/368 (25%), Positives = 171/368 (46%), Gaps = 72/368 (19%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSH--ILKLGFISHVYVATSLL 58
++L + ++ + + F++ +LK+CT V H L +H ++KLGF+ ++VA +LL
Sbjct: 99 LRLHRGVLQRGILPNEFTLPFVLKACTTVR--AVEHALAAHGVVVKLGFVQQIFVANALL 156
Query: 59 HEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
H + S +R+ F E+ +RN V+WNTMI GY+++G V EA
Sbjct: 157 HFHASAGSLRDSRRFFGEMADRNVVSWNTMIGGYAQAGEVSEA----------------- 199
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
LF EM ++GL D T+ ++L CS G+ L +G+ H ++
Sbjct: 200 --------------CALFGEM-RHQGLLADVFTLVSLLFACSSEGN--LEVGRLVHCHML 242
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE---- 233
+ ++ + L+DMY KCG L A F++M +NV++WT+++C A G +
Sbjct: 243 VSGSRVDRILGNALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRD 302
Query: 234 ---------------------------DALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
+ L L+ M++ G+ P+E T GVL+AC G
Sbjct: 303 WFEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQNGD 362
Query: 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
+ G+ + + ++ +P + ++D++ + G ++ A + M NVI W +
Sbjct: 363 LASGKMIHCYVRDNFN-DPGVTLLNSLLDMYARCGQVDTAIGLFTEMP-NKNVISWNVII 420
Query: 327 AACKEHKQ 334
A H +
Sbjct: 421 GALAMHGR 428
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 147/329 (44%), Gaps = 32/329 (9%)
Query: 16 SFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDE 75
S +L +L+ C +L IH +H++ GF VA+ L+ Y S G
Sbjct: 10 SRHVLELLRQCRSIQHLDQIH---AHLVVHGFSDVSSVASQLIASYCTLSAG-------- 58
Query: 76 LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF 135
+ G +C AR F+R+P + ++ ++ AY N+ L+L
Sbjct: 59 ----------------DRDGGLCHARRLFDRIPEPDRFMYNTLVRAYSNSDCPQEALRLH 102
Query: 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY 195
R ++ G+ P++ T+ VL C+ + +V + +AHG +VK + +A L+ +
Sbjct: 103 RGVL-QRGILPNEFTLPFVLKACTTVRAVEHAL--AAHGVVVKLGFVQQIFVANALLHFH 159
Query: 196 AKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT 255
A G L+ + F M +RNV+SW +I G A G +A +LF M+ G+ + T
Sbjct: 160 ASAGSLRDSRRFFGEMADRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQGLLADVFTLV 219
Query: 256 GVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRL 315
+L AC G ++ GR + RI ++D++GK G L A+ M +
Sbjct: 220 SLLFACSSEGNLEVGRLVHCHMLVSGSRVDRILG-NALLDMYGKCGDLWMAHRCFDMMPI 278
Query: 316 EPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
+ NV+ W S L A +H D +Q
Sbjct: 279 K-NVVTWTSMLCAQAKHGSVDAVRDWFEQ 306
>gi|224097410|ref|XP_002310922.1| predicted protein [Populus trichocarpa]
gi|222850742|gb|EEE88289.1| predicted protein [Populus trichocarpa]
Length = 554
Score = 284 bits (726), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 151/409 (36%), Positives = 230/409 (56%), Gaps = 17/409 (4%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFIS-HVYVATSLLH 59
+Q F+QM D+ + +L +CT +L +HS +L G+ S +V++ + L++
Sbjct: 111 IQFFNQMLLTDSRPDAHTYSFLLAACTSSLSLREGQQVHSKVLTNGYYSSNVFLMSKLVN 170
Query: 60 EYVV------TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA 113
Y + ARK+FD++ ERN V WN+M+ GY + GN+ AR F MP RNV
Sbjct: 171 FYAAVVGGEGAALASARKVFDDMSERNVVCWNSMLAGYMRRGNLDGARRIFYEMPERNVV 230
Query: 114 SWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH 173
SW+ MI+ Y G L LF +M G+ DQ+ + A L+ C+ LG L MG H
Sbjct: 231 SWTTMISGYAKNGKCKQALNLFDQM-RKAGVELDQVVLLAALTACAELGD--LKMGMWIH 287
Query: 174 GFIVKNEWELNEQI----ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR 229
+I N+++ L+ MYA CG + A VF M ER+ +SWT+LI A +
Sbjct: 288 SYIQDTFVGSNQRVLVSLNNALIHMYASCGMIDEAYEVFRWMPERSAVSWTSLITAFAKQ 347
Query: 230 GYSEDALSLFEMMQATGV---KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR 286
GY++ L +F MQ G +P+ +TF GVL AC H GLVDEGR+ FK + + + ++PR
Sbjct: 348 GYAQAVLEIFRSMQRLGTSEARPDGITFIGVLCACSHAGLVDEGRQLFKDMIQRWGIKPR 407
Query: 287 IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQAL 346
I+HYGCMVDL +AGFL+EA E+I TM ++PN +WG+ L C+ ++ ++A V ++ +
Sbjct: 408 IEHYGCMVDLLSRAGFLDEAQELIATMPVKPNNAVWGALLGGCRFYRNAELASLVSQKLV 467
Query: 347 RMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
P+ G +L+ +Y EKW+ VR+ M+ V+K G S +
Sbjct: 468 AEPDPDKAAGYLSLLAQVYASAEKWQDVATVRQKMVAMGVKKPAGQSWV 516
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 129/268 (48%), Gaps = 11/268 (4%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR----NVASWSAMIAAYLN 124
A +F ++ + + WN MI+ +++S ++ FF +M L + ++S ++AA +
Sbjct: 79 AHYVFKDIQSPSTILWNQMIRAHARSQTPAKSIQFFNQMLLTDSRPDAHTYSFLLAACTS 138
Query: 125 AGAYDPGLKLFREMISNEGLTPDQMTIGAVLS-GCSHLGSVGLLMGKSAHGFIVKNEWEL 183
+ + G ++ ++++N + + + +++ + +G G + + F + E
Sbjct: 139 SLSLREGQQVHSKVLTNGYYSSNVFLMSKLVNFYAAVVGGEGAALASARKVF--DDMSER 196
Query: 184 NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQ 243
N ++ Y + G L A +F M ERNV+SWT +I G A G + AL+LF+ M+
Sbjct: 197 NVVCWNSMLAGYMRRGNLDGARRIFYEMPERNVVSWTTMISGYAKNGKCKQALNLFDQMR 256
Query: 244 ATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY---DLEPRIQHYGCMVDLFGKA 300
GV+ +++ LTAC G + G I + + + + ++ ++
Sbjct: 257 KAGVELDQVVLLAALTACAELGDLKMGMWIHSYIQDTFVGSNQRVLVSLNNALIHMYASC 316
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
G ++EAYEV R M E + + W S + A
Sbjct: 317 GMIDEAYEVFRWMP-ERSAVSWTSLITA 343
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 79/190 (41%), Gaps = 20/190 (10%)
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
VF+ ++ + I W +I A ++ F M T +P+ T++ +L AC +
Sbjct: 82 VFKDIQSPSTILWNQMIRAHARSQTPAKSIQFFNQMLLTDSRPDAHTYSFLLAACTSSLS 141
Query: 267 VDEGRK-YFKMIDEEYD------LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNV 319
+ EG++ + K++ Y + + Y +V G+ L A +V M E NV
Sbjct: 142 LREGQQVHSKVLTNGYYSSNVFLMSKLVNFYAAVVG--GEGAALASARKVFDDMS-ERNV 198
Query: 320 IIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRK 379
+ W S LA D A R+ + PE + +T + Y N K + A
Sbjct: 199 VCWNSMLAGYMRRGNLDGARRIFYEM-----PERNVVSWTTMISGYAKNGKCKQA----- 248
Query: 380 LMLNQNVRKA 389
L L +RKA
Sbjct: 249 LNLFDQMRKA 258
>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 284 bits (726), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 153/425 (36%), Positives = 237/425 (55%), Gaps = 37/425 (8%)
Query: 4 FSQMHRQSV-PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
F +M R S P DSFS I+K+ + ++ V LH L G +H++V T+L+ Y
Sbjct: 93 FIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVGIQLHCQALVHGLDTHLFVGTTLISMYG 152
Query: 63 VTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
F GFARK+FDE+PE NA+ WN M+ + G++ R+ F+ MP+RN+ SW+ M+A
Sbjct: 153 ECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMKGGRELFDLMPVRNLMSWNVMLAG 212
Query: 122 YLNAGAYDPGLKLFREM------------------------------ISNEGLTPDQMTI 151
Y AG + ++F EM + +G+ P++ ++
Sbjct: 213 YTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSL 272
Query: 152 GAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFE-L 210
VLS C+ G+ L GK HGFI K+ + L+D Y+KCG + A +VFE +
Sbjct: 273 TGVLSACAQAGA--LEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERI 330
Query: 211 MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
M ERN++SWT+++ A G+ E+A+ +F M+ +G++P+E+ F +L AC H GLV++G
Sbjct: 331 MNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVEQG 390
Query: 271 RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330
+YF + Y++EP I+HYGCMVDL+G+AG L++AYE + M + IIW + L AC
Sbjct: 391 CEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRTLLGACS 450
Query: 331 EHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKAR 390
H +AE+V K+ L + P N L+ + Y + KW+ A VR+ M Q + K
Sbjct: 451 MHGDVKLAEQV-KERLSELDPNNSSD-HVLLSNAYAVAGKWKDAASVRRSMTEQRITKTP 508
Query: 391 GSSVI 395
G S+I
Sbjct: 509 GWSMI 513
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 136/321 (42%), Gaps = 54/321 (16%)
Query: 17 FSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT---SFGFARKLF 73
S+L+I KS LT +H+++LKLG S ++A LLH ++ S +A +LF
Sbjct: 9 LSLLNICKS------LTTFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLF 62
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
P + NT+I+G +S D LK
Sbjct: 63 RYTPNPDVFMHNTLIRGLYESDR------------------------------PQDSLLK 92
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
F EM N PD + ++ ++L SV + G H + + + + + T L+
Sbjct: 93 -FIEMRRNSFSPPDSFSFAFIVKAAANLRSVRV--GIQLHCQALVHGLDTHLFVGTTLIS 149
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
MY +CGF+ +A VF+ M E N I+W A++ G + LF++M N M+
Sbjct: 150 MYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMKGGRELFDLMPVR----NLMS 205
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
+ +L G ++ R+ F + + D+ + M+ F G+ EEA+ R +
Sbjct: 206 WNVMLAGYTKAGELELAREMFLEMPMKDDVS-----WSTMIVGFAHNGYFEEAFSFFREL 260
Query: 314 R---LEPNVIIWGSFLAACKE 331
+ + PN L+AC +
Sbjct: 261 QRKGMRPNETSLTGVLSACAQ 281
>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 641
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 139/396 (35%), Positives = 236/396 (59%), Gaps = 6/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF+ M +V +DS +++ ++ +C++ V+ + +I VY+ SL+
Sbjct: 243 LDLFNLMREANVTADSVTMVKVILACSYLCEDGVVDSMVKYIEDKHVDIDVYLGNSLIDM 302
Query: 61 YVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y AR++FD + E+N V+WN M+ GY+ +G++ A+ F MP+RNV SW+ MI
Sbjct: 303 YGRRGLVDLARRVFDRMQEKNIVSWNAMLTGYATAGDLVAAKKLFNEMPIRNVISWTCMI 362
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ A LKLF+EM+ + + PD++T+ +VLS CSHLG L G++ H ++ ++
Sbjct: 363 SGCAQANQCSDALKLFQEMM-DANVKPDEITVSSVLSACSHLGL--LDTGQTVHEYMCRH 419
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + + + L+DMY KCG + AL VF M++++ +SWT++I G A G+ ++ LF
Sbjct: 420 DIKSDVYVGNALIDMYCKCGVVDKALEVFHDMKKKDSVSWTSMILGLAVNGFVDNVFELF 479
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M G++P +F G+L AC H GLVD+G +YF+ ++ Y L P ++HYGC+VDL +
Sbjct: 480 SQMLRDGLQPTHGSFIGILLACTHAGLVDKGLEYFESMEHVYGLRPEMKHYGCVVDLLSR 539
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
+G L+ AYE I+ M + P+V++W L+ACK H+ +AE + L + P N G +
Sbjct: 540 SGELDRAYEFIKQMPVVPDVVLWRILLSACKLHRNLVLAEIATSKLLEL-DPSNSGN-YV 597
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ + Y +++W+ A R+R LM+ +V+K S I
Sbjct: 598 LLSNTYAGSDRWDDASRMRDLMVVGDVQKPSSWSSI 633
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/373 (26%), Positives = 170/373 (45%), Gaps = 68/373 (18%)
Query: 7 MHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTS 65
M+ Q + D+ + +++ K+C+ ++ H +LKLGF S++++ SL+ Y
Sbjct: 148 MYNQGILGDNLTFIYLFKACSRVKDVLHGQVFHVQVLKLGFGSYLFIENSLIRMYGYFGE 207
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
G+A+K+FD++ +R+ V+WN++I GYS+ E D F M NV
Sbjct: 208 LGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMREANV------------- 254
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
T D +T+ V+ CS+L G++ S +I +++
Sbjct: 255 -------------------TADSVTMVKVILACSYLCEDGVV--DSMVKYIEDKHVDIDV 293
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEE-------------------------------R 214
+ L+DMY + G + A VF+ M+E R
Sbjct: 294 YLGNSLIDMYGRRGLVDLARRVFDRMQEKNIVSWNAMLTGYATAGDLVAAKKLFNEMPIR 353
Query: 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF 274
NVISWT +I G A DAL LF+ M VKP+E+T + VL+AC H GL+D G+
Sbjct: 354 NVISWTCMISGCAQANQCSDALKLFQEMMDANVKPDEITVSSVLSACSHLGLLDTGQTVH 413
Query: 275 KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
+ + +D++ + ++D++ K G +++A EV M+ + + + W S + +
Sbjct: 414 EYM-CRHDIKSDVYVGNALIDMYCKCGVVDKALEVFHDMK-KKDSVSWTSMILGLAVNGF 471
Query: 335 FDMAERVIKQALR 347
D + Q LR
Sbjct: 472 VDNVFELFSQMLR 484
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 128/254 (50%), Gaps = 11/254 (4%)
Query: 79 RNAVTWNTMIKGYSKSGNVCEARDF-FERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
+N + + +IK Y+ S + +F F ++ + ++ +I + + + ++ +
Sbjct: 87 KNPKSMSNVIKSYALSRSHLNKANFAFIQIGQPTLLIFNYLIRGLSQSENPNEAIVMYSD 146
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
++ N+G+ D +T + CS + V L G+ H ++K + I L+ MY
Sbjct: 147 LMYNQGILGDNLTFIYLFKACSRVKDV--LHGQVFHVQVLKLGFGSYLFIENSLIRMYGY 204
Query: 198 CGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGV 257
G L YA VF+ M++R+++SW +LICG + ++ L LF +M+ V + +T V
Sbjct: 205 FGELGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMREANVTADSVTMVKV 264
Query: 258 LTACVH---TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR 314
+ AC + G+VD KY + D+ D++ + + ++D++G+ G ++ A V M+
Sbjct: 265 ILACSYLCEDGVVDSMVKYIE--DKHVDIDVYLGN--SLIDMYGRRGLVDLARRVFDRMQ 320
Query: 315 LEPNVIIWGSFLAA 328
E N++ W + L
Sbjct: 321 -EKNIVSWNAMLTG 333
>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 537
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 147/396 (37%), Positives = 229/396 (57%), Gaps = 6/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+ M ++++ +L++C ++L+ LH+ ++LG+ ++ +V LLH
Sbjct: 98 LSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHL 157
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y AR+LFD R+ VTW +I GY+KSG V AR F+ MP +N SWSAMI
Sbjct: 158 YASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMI 217
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y G + L+LF +M G P+ I L+ C+ LG+ L G+ H ++ +N
Sbjct: 218 TGYAQIGLFREALELFNDM-QIAGFRPNHGAIVGALTACAFLGA--LDQGRWIHAYVDRN 274
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
L+ + T L+DMYAKCG ++ A VF+ M +R+V ++T+LI G A+ G+S A+ +F
Sbjct: 275 RMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMF 334
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MQ GV PNE+TF +L+AC GLV+EG + FK + Y +EP +QHYGC+VDL G+
Sbjct: 335 TRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGR 394
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG LE+A V+R M LEP+ + G+ L AC+ H ++ + ++ + + GGV
Sbjct: 395 AGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVECLAE--RSLDHGGVHV 452
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y +WE +VRK M + V+K G S+I
Sbjct: 453 LLSNMYASANQWEDVAKVRKGMEEKKVKKVPGCSLI 488
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/349 (24%), Positives = 142/349 (40%), Gaps = 69/349 (19%)
Query: 16 SFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKL 72
S +L +L C + I + SH+ G + + A ++ V++ G A L
Sbjct: 13 SRRVLSLLDQCV---TMAHIKQIQSHLTVSGTLFDPFAAGRIISFCAVSAQGDISHAYLL 69
Query: 73 FDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGL 132
F LP R + WNTM++ ++ L
Sbjct: 70 FLSLPRRTSFIWNTMLRAFTDKKEPATV-------------------------------L 98
Query: 133 KLFREMISNEGLTPDQMTIGAVLSGCSHLG--SVGLL-------MGKSAHGFIVKN---- 179
L++ M+S G P+ T +L C+ L S G+L +G A+ F+
Sbjct: 99 SLYKYMLST-GFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHL 157
Query: 180 --------------EWELNEQIA--TILVDMYAKCGFLKYALMVFELMEERNVISWTALI 223
+ +N + T +++ YAK G + A +F+ M E+N +SW+A+I
Sbjct: 158 YASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMI 217
Query: 224 CGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDL 283
G A G +AL LF MQ G +PN G LTAC G +D+GR +D +
Sbjct: 218 TGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMV 277
Query: 284 EPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
RI ++D++ K G +E A V M L+ +V + S ++ H
Sbjct: 278 LDRILGTA-LIDMYAKCGCVETACRVFDEM-LDRDVFAFTSLISGLANH 324
>gi|347954498|gb|AEP33749.1| chloroplast biogenesis 19, partial [Crucihimalaya wallichii]
Length = 491
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 151/400 (37%), Positives = 244/400 (61%), Gaps = 12/400 (3%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHF--NNLTVIHHLHSHILKLGFI-SHVYVATSLL 58
+ FS M V + + + +L C F + T+ + LH + KLG +HV V T+++
Sbjct: 48 KXFSDMRLSGVEPNHITFIALLSGCGDFPSGSETLSNLLHGYACKLGLDRTHVMVGTAII 107
Query: 59 HEYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
Y AR +FD + + N+VTWNTMI GY +SG V A F++MP R++ SW+A
Sbjct: 108 GMYSKRGHVKKARLVFDYMEDINSVTWNTMIDGYMRSGQVDNAVKMFDKMPERDLISWTA 167
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MI ++ G ++ L FREM G+ PD + I A L+ C++LG+ L G H +++
Sbjct: 168 MINGFVKKGFHEEALVWFREM-QISGVRPDYVAIIAALNACTNLGA--LSFGLWVHRYVM 224
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
+++ N +++ L+D+Y +CG +++A VF+ ME+R V+SW ++I G A G + ++L
Sbjct: 225 NQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLV 284
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
F MQ G KP+ +TFTG LTAC H GLV+EG +YF+ + +Y + PRI+HYGC+VDL+
Sbjct: 285 YFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDYGISPRIEHYGCLVDLY 344
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFD-MAERVIKQALRM-VKPENDG 355
+AG LE+A +VI +M ++PN ++ GS LAAC+ H +AER++K + VK ++
Sbjct: 345 SRAGRLEDALKVIESMPMKPNEVVIGSLLAACRTHGNNTVLAERLMKHLSDLNVKSHSN- 403
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++ ++Y + KWEGA ++R+ M ++K G S I
Sbjct: 404 --YVILSNMYAADGKWEGASQMRRKMKGLGLKKQPGFSSI 441
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 14/144 (9%)
Query: 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275
+SWT+ I G +A F M+ +GV+PN +TF +L+ C G G +
Sbjct: 27 TVSWTSRITLLTRNGRLAEAAKXFSDMRLSGVEPNHITFIALLSGC---GDFPSGSETLS 83
Query: 276 MIDEEYDLEPRIQHYGCMV-----DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330
+ Y + + MV ++ K G +++A V M + N + W + +
Sbjct: 84 NLLHGYACKLGLDRTHVMVGTAIIGMYSKRGHVKKARLVFDYME-DINSVTWNTMIDGYM 142
Query: 331 EHKQFDMAERVIKQALRMVKPEND 354
Q D A ++ + PE D
Sbjct: 143 RSGQVDNAVKMFDKM-----PERD 161
>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 548
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 153/396 (38%), Positives = 232/396 (58%), Gaps = 10/396 (2%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L++++ + DS+SI +LK+ + + V +H+ + V VATSL+ Y
Sbjct: 109 LYTRIRIDGLRPDSYSIPSVLKAVVKLSAVEVGRQIHTQTVSSALDMDVNVATSLIQMY- 167
Query: 63 VTSFGF---ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
+S GF ARKLFD + ++ WN M+ GY K G + AR F MP RNV SW+ +I
Sbjct: 168 -SSCGFVSDARKLFDFVGFKDVALWNAMVAGYVKVGELKSARKVFNEMPQRNVISWTTLI 226
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A Y ++LFR+M E + PD++ + AVLS C+ LG++ L G+ H +I K+
Sbjct: 227 AGYAQTNRPHEAIELFRKM-QLEEVEPDEIAMLAVLSACADLGALEL--GEWIHNYIEKH 283
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ L+DMYAK G ++ AL VFE M++++VI+W+ +I A G +A+ +F
Sbjct: 284 GLCRIVSLYNALIDMYAKSGNIRRALEVFENMKQKSVITWSTVIAALALHGLGGEAIDMF 343
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M+ V+PNE+TF +L+AC H G+VD GR YF + Y +EP+I+HYGCM+DL +
Sbjct: 344 LRMEKAKVRPNEVTFVAILSACSHVGMVDVGRYYFDQMQSMYKIEPKIEHYGCMIDLLAR 403
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG+L+EA +++ M E N +IWGS LAA H+ ++A+ +K L ++P N G +
Sbjct: 404 AGYLQEAQKLLHDMPFEANAMIWGSLLAASNTHRDAELAQLALKH-LAKLEPGNSGN-YV 461
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ + Y KW + VRKLM N V+KA G SVI
Sbjct: 462 LLSNTYAALGKWNESGTVRKLMRNAGVKKAPGGSVI 497
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 107/234 (45%), Gaps = 40/234 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF +M + V D ++L +L +C L + +H++I K G V + +L+
Sbjct: 239 IELFRKMQLEEVEPDEIAMLAVLSACADLGALELGEWIHNYIEKHGLCRIVSLYNALIDM 298
Query: 61 YVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + + A ++F+ + +++ +TW+T+I + G EA D F RM V
Sbjct: 299 YAKSGNIRRALEVFENMKQKSVITWSTVIAALALHGLGGEAIDMFLRMEKAKV------- 351
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
P+++T A+LS CSH+G V + G+ + ++
Sbjct: 352 -------------------------RPNEVTFVAILSACSHVGMVDV--GRYYFDQM-QS 383
Query: 180 EWELNEQIA--TILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGS-AHR 229
+++ +I ++D+ A+ G+L+ A + M E N + W +L+ S HR
Sbjct: 384 MYKIEPKIEHYGCMIDLLARAGYLQEAQKLLHDMPFEANAMIWGSLLAASNTHR 437
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/233 (18%), Positives = 95/233 (40%), Gaps = 13/233 (5%)
Query: 153 AVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME 212
++LS C H L HGF++ + + + +D G YA +F
Sbjct: 29 SLLSNCRHH-----LHLYQIHGFMLHRALDQDNLFLSQFIDACTSLGLSSYAFSIFSNKT 83
Query: 213 ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK 272
++ + I + +A+ L+ ++ G++P+ + VL A V V+ GR+
Sbjct: 84 HPDLRLYNTAIKALSKTSSPINAIWLYTRIRIDGLRPDSYSIPSVLKAVVKLSAVEVGRQ 143
Query: 273 -YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKE 331
+ + + D++ + ++ ++ GF+ +A ++ + + +V +W + +A +
Sbjct: 144 IHTQTVSSALDMDVNVA--TSLIQMYSSCGFVSDARKLFDFVGFK-DVALWNAMVAGYVK 200
Query: 332 HKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384
+ A +V + + N TLI N E E RK+ L +
Sbjct: 201 VGELKSARKVFNE----MPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEE 249
>gi|297733949|emb|CBI15196.3| unnamed protein product [Vitis vinifera]
Length = 467
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 145/408 (35%), Positives = 237/408 (58%), Gaps = 16/408 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L+++M + F+ ++ C L +H ++ G+ ++V+V TSL++
Sbjct: 15 VELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVVANGYCTNVFVRTSLVNL 74
Query: 61 YVVTSFGF-----ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASW 115
Y + G+ AR++FDE+ +RN V+WN+++ GY + G+V AR F+ MP RNV SW
Sbjct: 75 YAIAG-GYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSW 133
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
+ MIA G L LF EM G+ DQ+ + A LS C+ LG L +G H +
Sbjct: 134 TTMIAGCAQIGRCKQALHLFHEM-RRAGVKLDQVALVAALSACAELGD--LKLGTWIHSY 190
Query: 176 IVKNEWELNE----QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGY 231
I + N+ + L+ MYA CG + A VF M++R+ ISWT++I G A +G+
Sbjct: 191 IDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGH 250
Query: 232 SEDALSLFEMMQATGV---KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQ 288
+E+AL +F+ MQ G +P+ +TF GVL AC H G VD+GR +F+ +++++ + PRI+
Sbjct: 251 AEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRIE 310
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348
HYGCMVDL +AGFL+EA+ +I +M ++PN +WG+ L C+ HK ++A V ++
Sbjct: 311 HYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVWGALLGGCRIHKNAELASHVAQKLALE 370
Query: 349 VKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
+KP+ G L+ ++Y ++W+ VR+ M+ VRK G S +
Sbjct: 371 LKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRSWVQ 418
>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 553
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 145/405 (35%), Positives = 236/405 (58%), Gaps = 16/405 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L+++M + F+ ++ C L +H ++ G+ ++V+V TSL++
Sbjct: 101 VELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVVANGYCTNVFVRTSLVNL 160
Query: 61 YVVTSFGF-----ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASW 115
Y + G+ AR++FDE+ +RN V+WN+++ GY + G+V AR F+ MP RNV SW
Sbjct: 161 YAIAG-GYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSW 219
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
+ MIA G L LF EM G+ DQ+ + A LS C+ LG L +G H +
Sbjct: 220 TTMIAGCAQIGRCKQALHLFHEM-RRAGVKLDQVALVAALSACAELGD--LKLGTWIHSY 276
Query: 176 IVKNEWELNE----QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGY 231
I + N+ + L+ MYA CG + A VF M++R+ ISWT++I G A +G+
Sbjct: 277 IDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGH 336
Query: 232 SEDALSLFEMMQATGV---KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQ 288
+E+AL +F+ MQ G +P+ +TF GVL AC H G VD+GR +F+ +++++ + PRI+
Sbjct: 337 AEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRIE 396
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348
HYGCMVDL +AGFL+EA+ +I +M ++PN +WG+ L C+ HK ++A V ++
Sbjct: 397 HYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVWGALLGGCRIHKNAELASHVAQKLALE 456
Query: 349 VKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
+KP+ G L+ ++Y ++W+ VR+ M+ VRK G S
Sbjct: 457 LKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRS 501
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 94/410 (22%), Positives = 165/410 (40%), Gaps = 92/410 (22%)
Query: 22 ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT-SFGFARKLFDELPERN 80
+L++C + + + +H+ I+ GF ++ LL Y+ + + A K+F+ + +
Sbjct: 24 LLQTC---DTIKKLKQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPS 80
Query: 81 AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMIS 140
WN MI+G+S+S P + V +L+ M+
Sbjct: 81 TTVWNQMIRGHSQS-----------ETPHKLV--------------------ELYNRMVE 109
Query: 141 NEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA---- 196
E P++ T ++ GC+ S L G+ HG +V N + N + T LV++YA
Sbjct: 110 AEA-EPNEFTYSFLIGGCAR--SRLLREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGG 166
Query: 197 ------------------------------KCGFLKYALMVFELMEERNVISWTALICGS 226
+CG + A +F+ M ERNV+SWT +I G
Sbjct: 167 YDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGC 226
Query: 227 AHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR 286
A G + AL LF M+ GVK +++ L+AC G + G IDE +
Sbjct: 227 AQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQ 286
Query: 287 ---IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIK 343
+ ++ ++ G +++AY+V M+ + + I W S + + + A V +
Sbjct: 287 PLLVSLNNSLIHMYASCGVIDKAYKVFIGMQ-QRSTISWTSMITGFAKQGHAEEALGVFQ 345
Query: 344 QALRMVKPEN--DGGVFT-LICD-------------LYTMNEKWEGAERV 377
R+ E DG F ++C MN+KW R+
Sbjct: 346 WMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRI 395
>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g37380, chloroplastic; Flags: Precursor
gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
Length = 632
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 149/402 (37%), Positives = 237/402 (58%), Gaps = 24/402 (5%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ Q+ + + F+ +LKSC+ + + H+H+LK G YVAT L+ Y
Sbjct: 117 LYVQLLSSEINPNEFTFSSLLKSCSTKSGKLI----HTHVLKFGLGIDPYVATGLVDVYA 172
Query: 63 ----VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
V S A+K+FD +PER+ V+ MI Y+K GNV AR F+ M R++ SW+ M
Sbjct: 173 KGGDVVS---AQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVM 229
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I Y G + L LF+++++ PD++T+ A LS CS +G+ L G+ H F+
Sbjct: 230 IDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGA--LETGRWIHVFVKS 287
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ LN ++ T L+DMY+KCG L+ A++VF +++++W A+I G A GYS+DAL L
Sbjct: 288 SRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRL 347
Query: 239 FEMMQA-TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
F MQ TG++P ++TF G L AC H GLV+EG + F+ + +EY ++P+I+HYGC+V L
Sbjct: 348 FNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLL 407
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQF----DMAERVIKQALRMVKPEN 353
G+AG L+ AYE I+ M ++ + ++W S L +CK H F ++AE +I ++
Sbjct: 408 GRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIK------ 461
Query: 354 DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ G++ L+ ++Y +EG +VR LM + + K G S I
Sbjct: 462 NSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTI 503
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 81/186 (43%), Gaps = 27/186 (14%)
Query: 195 YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTF 254
YA G ++++L +F + ++ +TA I ++ G + A L+ + ++ + PNE TF
Sbjct: 74 YASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTF 133
Query: 255 TGVLTAC----------------------VHTGLVDEGRKYFKMIDEE--YDLEPR--IQ 288
+ +L +C V TGLVD K ++ + +D P +
Sbjct: 134 SSLLKSCSTKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLV 193
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348
M+ + K G +E A + +M E +++ W + +H + A + ++ L
Sbjct: 194 SSTAMITCYAKQGNVEAARALFDSM-CERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAE 252
Query: 349 VKPEND 354
KP+ D
Sbjct: 253 GKPKPD 258
>gi|347954508|gb|AEP33754.1| chloroplast biogenesis 19, partial [Nasturtium officinale]
Length = 447
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 151/400 (37%), Positives = 243/400 (60%), Gaps = 12/400 (3%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHF--NNLTVIHHLHSHILKLGFI-SHVYVATSLL 58
Q FS M V + + + +L C F + + LH + KLG +HV V T++L
Sbjct: 4 QGFSDMRFAGVEPNHITFIALLSGCGDFPSGSEALGDLLHGYACKLGLDRTHVMVGTAIL 63
Query: 59 HEYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
Y F AR +FD + ++N+VTWNTMI GY +SG V A F+ M R++ SW+A
Sbjct: 64 GMYSKRGRFRKARLIFDYMEDKNSVTWNTMIDGYMRSGQVNTAVKLFDEMLNRDLISWTA 123
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
M+ ++ G ++ L FREM G+ PD + I A L+ C++LG+ L G H +++
Sbjct: 124 MVNGFVKKGFHEEALSWFREM-QISGVKPDYVAIIAALAACTNLGA--LSFGLWIHRYVM 180
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
+++ N +++ L+D+Y +CG +++A VF+ ME+R V+SW ++I G A G + ++L
Sbjct: 181 SQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLF 240
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
F MQ G KP+ +TFTG LTAC H GLV+EG +YF+ + +Y + PRI+HYGC+VDL+
Sbjct: 241 YFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDYRISPRIEHYGCIVDLY 300
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFD-MAERVIKQALRM-VKPENDG 355
+AG LE+A +V+++M ++PN ++ GS LAACK H +AER++K + VK ++
Sbjct: 301 SRAGRLEDALKVVQSMPMKPNEVVIGSLLAACKNHGNNTLLAERLMKHLSDLNVKSHSN- 359
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++ ++Y + KWEGA ++R+ M ++K G S I
Sbjct: 360 --YVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSI 397
>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
Length = 512
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 147/396 (37%), Positives = 229/396 (57%), Gaps = 6/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+ M ++++ +L++C ++L+ LH+ ++LG+ ++ +V LLH
Sbjct: 73 LSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHL 132
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y AR+LFD R+ VTW +I GY+KSG V AR F+ MP +N SWSAMI
Sbjct: 133 YASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMI 192
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y G + L+LF +M G P+ I L+ C+ LG+ L G+ H ++ +N
Sbjct: 193 TGYAQIGLFREALELFNDM-QIAGFRPNHGAIVGALTACAFLGA--LDQGRWIHAYVDRN 249
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
L+ + T L+DMYAKCG ++ A VF+ M +R+V ++T+LI G A+ G+S A+ +F
Sbjct: 250 RMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMF 309
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MQ GV PNE+TF +L+AC GLV+EG + FK + Y +EP +QHYGC+VDL G+
Sbjct: 310 TRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGR 369
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG LE+A V+R M LEP+ + G+ L AC+ H ++ + ++ + + GGV
Sbjct: 370 AGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVECLAE--RSLDHGGVHV 427
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y +WE +VRK M + V+K G S+I
Sbjct: 428 LLSNMYASANQWEDVAKVRKGMEEKKVKKVPGCSLI 463
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 135/330 (40%), Gaps = 66/330 (20%)
Query: 35 IHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDELPERNAVTWNTMIKGY 91
I + SH+ G + + A ++ V++ G A LF LP R + WNTM++ +
Sbjct: 4 IKQIQSHLTVSGTLFDPFAAGRIISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTMLRAF 63
Query: 92 SKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTI 151
+ L L++ M+S G P+ T
Sbjct: 64 TDKKEPATV-------------------------------LSLYKYMLST-GFLPNNYTF 91
Query: 152 GAVLSGCSHLG--SVGLL-------MGKSAHGFIVKN------------------EWELN 184
+L C+ L S G+L +G A+ F+ + +N
Sbjct: 92 SFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVN 151
Query: 185 EQIA--TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
+ T +++ YAK G + A +F+ M E+N +SW+A+I G A G +AL LF M
Sbjct: 152 RDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDM 211
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
Q G +PN G LTAC G +D+GR +D + RI ++D++ K G
Sbjct: 212 QIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTA-LIDMYAKCGC 270
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
+E A V M L+ +V + S ++ H
Sbjct: 271 VETACRVFDEM-LDRDVFAFTSLISGLANH 299
>gi|414885893|tpg|DAA61907.1| TPA: hypothetical protein ZEAMMB73_945776 [Zea mays]
Length = 584
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 145/399 (36%), Positives = 239/399 (59%), Gaps = 8/399 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFI-SHVYVATSLLH 59
++LF + R D + SC + LH+H K G + SH V L+H
Sbjct: 60 LRLFDHLLRSGADPDPAAYELAFASCARARDRATAAQLHAHAAKRGLVASHRRVRCRLVH 119
Query: 60 EYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEA-RDFFERMPLRNVASWSA 117
Y V AR++FD + + V WN +++GY++ G + RDFF RMP R+ SW+
Sbjct: 120 AYAVCGMLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDEDLLRDFFARMPSRDSVSWNT 179
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
+++ + G YD + +FREM++++ PD++T+ +V+S ++LG+ L G AH ++
Sbjct: 180 VLSWCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLGA--LAHGLWAHAYVF 237
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFE-LMEERNVISWTALICGSAHRGYSEDAL 236
+ E+ E++++ L++MY+KCGF++ A+ VF+ + +R++ +W A++ G GYSE AL
Sbjct: 238 RKCIEVEEKLSSALINMYSKCGFIEGAVYVFDNVGGKRSLDTWNAMLAGFTANGYSERAL 297
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
LF M++T + PN++TF VL AC H GLV+EG KYF+ + Y +EP I HYGCMVDL
Sbjct: 298 ELFTRMESTRLMPNKITFNTVLNACSHGGLVEEGMKYFQRMSRFYGIEPDIAHYGCMVDL 357
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
F +AG E+A E+I+TM +EP+ + + L AC+ HK ++ ++V + + ND
Sbjct: 358 FCRAGMFEKAEEIIQTMPMEPDASMLKALLGACRTHKNLELGKKVGHRLIEAAA--NDHA 415
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ ++Y ++ W G +VRKLML++ V K GSS +
Sbjct: 416 GYVLLSNIYALDGNWGGVHKVRKLMLDRGVLKTPGSSSV 454
>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 143/415 (34%), Positives = 236/415 (56%), Gaps = 40/415 (9%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG------- 67
+ F+ + K+C+ + +H H++K G S V++ ++ +H Y SFG
Sbjct: 131 NKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMY--ASFGRLEDARK 188
Query: 68 --------------------------FARKLFDELPERNAVTWNTMIKGYSKSGNVCEAR 101
A+ LF ++P +N +WN MI G +K GN+ +AR
Sbjct: 189 MFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDAR 248
Query: 102 DFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHL 161
F+ M R+ SWS+M+ Y++AG Y L++F++M E P + + +VL+ CS++
Sbjct: 249 KLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQM-QREETRPGRFILSSVLAACSNI 307
Query: 162 GSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTA 221
G++ G+ H ++ +N +L+ + T L+DMYAKCG L VFE M+ER + +W A
Sbjct: 308 GAID--QGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNA 365
Query: 222 LICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY 281
+I G A G +EDAL LF +Q +KPN +T GVLTAC H G VD+G + F+ + E Y
Sbjct: 366 MIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFY 425
Query: 282 DLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERV 341
++P ++HYGCMVDL G++G EA ++I +M ++PN +WG+ L AC+ H FD+AERV
Sbjct: 426 GVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERV 485
Query: 342 IKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
K L + +P+N G + L+ ++Y +++ ++RKLM ++ ++ G S++
Sbjct: 486 GKILLEL-EPQNS-GRYVLLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVD 538
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 88/371 (23%), Positives = 158/371 (42%), Gaps = 55/371 (14%)
Query: 10 QSVPSDSFSILHILK--SCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV---VT 64
+++P+ +LK +L + LH +L+ G YV+ +LL Y +
Sbjct: 22 KNIPTSKLPQKTVLKLFDSKSITSLQYLTQLHGLVLRSGHFQDHYVSGALLKCYANPHFS 81
Query: 65 SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR---NVASWSAMIAA 121
+F FA K+F +P N WN +IKG ++ + +A F+ RM + N ++ + A
Sbjct: 82 NFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDARPNKFTYPTLFKA 141
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV----------------- 164
A A G ++ ++ + G+ D A + + G +
Sbjct: 142 CSVAQAVQEGRQIHGHVVKH-GIGSDVHIKSAGIHMYASFGRLEDARKMFYSGESDVVCW 200
Query: 165 ----------GLLMGKSAHGFI----VKNEWELNEQIATILVDMYAKCGFLKYALMVFEL 210
G+L ++A G VKN N ++++ AK G L A +F+
Sbjct: 201 NTMIDGYLKCGVL--EAAKGLFAQMPVKNIGSWN-----VMINGLAKGGNLGDARKLFDE 253
Query: 211 MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
M ER+ ISW++++ G G ++AL +F+ MQ +P + VL AC + G +D+G
Sbjct: 254 MSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQG 313
Query: 271 R---KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
R Y K + D ++D++ K G L+ +EV M+ E + W + +
Sbjct: 314 RWVHAYLKRNSIKLDAVLGT----ALLDMYAKCGRLDMGWEVFEEMK-EREIFTWNAMIG 368
Query: 328 ACKEHKQFDMA 338
H + + A
Sbjct: 369 GLAIHGRAEDA 379
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 15/177 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+++F QM R+ F + +L +C++ + +H+++ + + T+LL
Sbjct: 279 LEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDM 338
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP----LRNVASW 115
Y ++F+E+ ER TWN MI G + G +A + F ++ N +
Sbjct: 339 YAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITL 398
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSA 172
++ A +AG D GL++F+ M G+ P+ H G + L+G+S
Sbjct: 399 VGVLTACAHAGFVDKGLRIFQTMREFYGVDPE----------LEHYGCMVDLLGRSG 445
>gi|347954490|gb|AEP33745.1| chloroplast biogenesis 19, partial [Arabis hirsuta]
Length = 435
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 145/362 (40%), Positives = 231/362 (63%), Gaps = 10/362 (2%)
Query: 38 LHSHILKLGFI-SHVYVATSLLHEYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSG 95
LH + KLG +HV V T++L Y F AR +FD + E+N+VTWNTMI GY ++G
Sbjct: 38 LHGYACKLGLDRAHVMVGTAILGMYSKRGRFRKARLVFDYMEEKNSVTWNTMIDGYMRNG 97
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155
V +A F+ MP R++ SW+AMI ++ G ++ L FREM G+ PD + I A L
Sbjct: 98 QVDDAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWFREM-QISGVKPDYVAIIAAL 156
Query: 156 SGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERN 215
+ C++LG+ L G H ++V +++ N +++ L+D+Y +CG +++A VF+ ME+R
Sbjct: 157 AACTNLGA--LSFGLWIHRYVVSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRT 214
Query: 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275
V+SW ++I G A G++ ++L F MQ G KPN +TFTG L AC H GLV+EG +YF+
Sbjct: 215 VVSWNSVIVGFAANGHAHESLVYFRKMQEEGFKPNAVTFTGALAACNHVGLVEEGLRYFQ 274
Query: 276 MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK-EHKQ 334
+ +Y + PRI+HYGC+VDL+ +AG LE+A +V+++M ++PN ++ GS LAAC+ +
Sbjct: 275 SMKRDYRISPRIEHYGCLVDLYSRAGRLEDALKVVQSMPMKPNEVVIGSLLAACRTQGNN 334
Query: 335 FDMAERVIKQALRM-VKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
+AERV+K + VK ++ + ++ ++Y + KWEGA ++R+ M ++K G S
Sbjct: 335 TVLAERVMKHLSDLNVKSHSN---YVILSNMYAADGKWEGASKMRRKMKGLGLKKEPGFS 391
Query: 394 VI 395
I
Sbjct: 392 SI 393
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 101/216 (46%), Gaps = 34/216 (15%)
Query: 143 GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE-LNEQIATILVDMYAKCGFL 201
G+ P+ +T A+LSG L S +G HG+ K + + + T ++ MY+K G
Sbjct: 9 GVEPNHITFIALLSGWGDLLSGSEALGDLLHGYACKLGLDRAHVMVGTAILGMYSKRGRF 68
Query: 202 KYALMVFELMEERN-------------------------------VISWTALICGSAHRG 230
+ A +VF+ MEE+N +ISWTA+I G +G
Sbjct: 69 RKARLVFDYMEEKNSVTWNTMIDGYMRNGQVDDAVKLFDEMPERDLISWTAMINGFVKKG 128
Query: 231 YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHY 290
+ E+AL+ F MQ +GVKP+ + L AC + G + G + + + D + ++
Sbjct: 129 FHEEALAWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVVSQ-DFKNNVRVS 187
Query: 291 GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
++DL+ + G +E A +V M + V+ W S +
Sbjct: 188 NSLIDLYCRCGCVEFARQVFDKME-KRTVVSWNSVI 222
>gi|297843364|ref|XP_002889563.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
gi|297335405|gb|EFH65822.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
Length = 500
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 148/398 (37%), Positives = 244/398 (61%), Gaps = 12/398 (3%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHF--NNLTVIHHLHSHILKLGFI-SHVYVATSLLHE 60
FS M V + + + IL C F + + LH + KLG +HV V T+++
Sbjct: 59 FSDMRLAGVEPNHITFIAILSGCGDFPSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGM 118
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y AR +FD + ++N+VTWNTMI GY +SG V A F++MP R++ SW+AMI
Sbjct: 119 YSKRGRVKKARCVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMI 178
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
++N G ++ L FREM G+ PD + I A L+ C++LG+ L G H +++
Sbjct: 179 NGFVNKGFHEEALAWFREM-QISGVKPDYVAIIAALNACTNLGA--LSFGLWVHRYVMSQ 235
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+++ N +++ L+D+Y +CG +++A VF+ ME+R V+SW ++I G A G + ++L F
Sbjct: 236 DFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYF 295
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MQ KP+ +TFTG LTAC H GLV+EG +YF+++ +Y + PRI+HYGC+VDL+ +
Sbjct: 296 RKMQEERFKPDAVTFTGALTACSHVGLVEEGLRYFQIMISDYRISPRIEHYGCLVDLYSR 355
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFD-MAERVIKQALRM-VKPENDGGV 357
AG LE+A +++++M ++PN ++ GS LAAC+ H +AE+++K + VK ++
Sbjct: 356 AGRLEDALKLVQSMPMKPNEVVIGSLLAACRNHGNNTVLAEKLMKHLTDLNVKSHSN--- 412
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++ ++Y + KWEGA ++R+ M ++K G S I
Sbjct: 413 YVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSI 450
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 14/145 (9%)
Query: 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF 274
N +SWT+ I G +A F M+ GV+PN +TF +L+ C G G +
Sbjct: 35 NTVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIAILSGC---GDFPSGSEAL 91
Query: 275 KMIDEEYDLEPRIQHYGCMV-----DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAAC 329
+ Y + + MV ++ K G +++A V M + N + W + +
Sbjct: 92 GDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRVKKARCVFDYME-DKNSVTWNTMIDGY 150
Query: 330 KEHKQFDMAERVIKQALRMVKPEND 354
Q D A ++ + PE D
Sbjct: 151 MRSGQVDNAAKMFDKM-----PERD 170
>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 155/413 (37%), Positives = 237/413 (57%), Gaps = 23/413 (5%)
Query: 1 MQLFSQMHRQS-VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+ LFS M V + F+ +LK+C + L +H I+K GF +V ++L+
Sbjct: 106 LMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVR 165
Query: 60 EYVVTSFG------FARKLFD-------ELPER----NAVTWNTMIKGYSKSGNVCEARD 102
YV+ + F + + D EL +R N V WN MI G + G++ A++
Sbjct: 166 MYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKN 225
Query: 103 FFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLG 162
F+ MP R+V SW+ MI+ Y G + + LF+EM S+ + P+ +T+ +VL + +G
Sbjct: 226 LFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSS-NIDPNYVTLVSVLPAIARIG 284
Query: 163 SVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTAL 222
+ L +GK H + KN+ E+++ + + LVDMY+KCG + AL VFE + +RN I+W+A+
Sbjct: 285 A--LELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAI 342
Query: 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD 282
I A G +EDA+ F +M GV PN++ + G+L+AC H GLV+EGR +F + +
Sbjct: 343 IGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVG 402
Query: 283 LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVI 342
L+PRI+HYGCMVDL G+AG LEEA E+IR M +EP+ +IW + L ACK HK M ERV
Sbjct: 403 LQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVA 462
Query: 343 KQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ + + +D G + + +LY WE RVR M ++RK G S I
Sbjct: 463 ETLMELAP--HDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWI 513
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 82/347 (23%), Positives = 144/347 (41%), Gaps = 81/347 (23%)
Query: 35 IHHLHSHILKLGFISHVYVATSLLHEYVVTS--FGFARKLFDELPERNAVTWNTMIKGYS 92
+ LH+ +K G I A ++ +S +AR +F ++PE N WNT+++ +
Sbjct: 35 LKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILRVLA 94
Query: 93 KSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIG 152
++ + +L + A L LF M+ + + P++ T
Sbjct: 95 ETND------------------------EHLQSEA----LMLFSAMLCDGRVKPNRFTFP 126
Query: 153 AVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC-------------- 198
+VL C+ L GK HG IVK + +E + + LV MY C
Sbjct: 127 SVLKACARASR--LREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNV 184
Query: 199 ---------------------------------GFLKYALMVFELMEERNVISWTALICG 225
G +K A +F+ M +R+V+SW +I G
Sbjct: 185 VDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISG 244
Query: 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP 285
A G+ +A++LF+ MQ++ + PN +T VL A G ++ G K+ + + +E
Sbjct: 245 YAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELG-KWIHLYAGKNKIEI 303
Query: 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
+VD++ K G ++EA +V T+ + N I W + + A H
Sbjct: 304 DDVLGSALVDMYSKCGSIDEALQVFETLP-KRNAITWSAIIGAFAMH 349
>gi|145335149|ref|NP_172066.3| protein pigment defective 247 [Arabidopsis thaliana]
gi|75191933|sp|Q9MA50.1|PPR13_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05750, chloroplastic; AltName: Full=Protein PIGMENT
DEFECTIVE 247; Flags: Precursor
gi|6850304|gb|AAF29381.1|AC009999_1 Contains similarity to a hypothetical protein from Arabidopsis
thaliana gb|AC007109.6, and contains two DUF17 PF|01535
domains [Arabidopsis thaliana]
gi|62320576|dbj|BAD95203.1| hypothetical protein [Arabidopsis thaliana]
gi|332189766|gb|AEE27887.1| protein pigment defective 247 [Arabidopsis thaliana]
Length = 500
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 149/398 (37%), Positives = 243/398 (61%), Gaps = 12/398 (3%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLT--VIHHLHSHILKLGFI-SHVYVATSLLHE 60
FS M V + + + +L C F + + + LH + KLG +HV V T+++
Sbjct: 59 FSDMTLAGVEPNHITFIALLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGM 118
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y F AR +FD + ++N+VTWNTMI GY +SG V A F++MP R++ SW+AMI
Sbjct: 119 YSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMI 178
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
++ G + L FREM G+ PD + I A L+ C++LG+ L G H +++
Sbjct: 179 NGFVKKGYQEEALLWFREM-QISGVKPDYVAIIAALNACTNLGA--LSFGLWVHRYVLSQ 235
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+++ N +++ L+D+Y +CG +++A VF ME+R V+SW ++I G A G + ++L F
Sbjct: 236 DFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYF 295
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MQ G KP+ +TFTG LTAC H GLV+EG +YF+++ +Y + PRI+HYGC+VDL+ +
Sbjct: 296 RKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSR 355
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH-KQFDMAERVIKQALRM-VKPENDGGV 357
AG LE+A +++++M ++PN ++ GS LAAC H +AER++K + VK ++
Sbjct: 356 AGRLEDALKLVQSMPMKPNEVVIGSLLAACSNHGNNIVLAERLMKHLTDLNVKSHSN--- 412
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++ ++Y + KWEGA ++R+ M ++K G S I
Sbjct: 413 YVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSI 450
>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 155/413 (37%), Positives = 237/413 (57%), Gaps = 23/413 (5%)
Query: 1 MQLFSQMHRQS-VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+ LFS M V + F+ +LK+C + L +H I+K GF +V ++L+
Sbjct: 106 LMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVR 165
Query: 60 EYVVTSFG------FARKLFD-------ELPER----NAVTWNTMIKGYSKSGNVCEARD 102
YV+ + F + + D EL +R N V WN MI G + G++ A++
Sbjct: 166 MYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKN 225
Query: 103 FFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLG 162
F+ MP R+V SW+ MI+ Y G + + LF+EM S+ + P+ +T+ +VL + +G
Sbjct: 226 LFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSS-NIDPNYVTLVSVLPAIARIG 284
Query: 163 SVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTAL 222
+ L +GK H + KN+ E+++ + + LVDMY+KCG + AL VFE + +RN I+W+A+
Sbjct: 285 A--LELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAI 342
Query: 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD 282
I A G +EDA+ F +M GV PN++ + G+L+AC H GLV+EGR +F + +
Sbjct: 343 IGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVG 402
Query: 283 LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVI 342
L+PRI+HYGCMVDL G+AG LEEA E+IR M +EP+ +IW + L ACK HK M ERV
Sbjct: 403 LQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVA 462
Query: 343 KQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ + + +D G + + +LY WE RVR M ++RK G S I
Sbjct: 463 ETLMELAP--HDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWI 513
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 81/347 (23%), Positives = 143/347 (41%), Gaps = 81/347 (23%)
Query: 35 IHHLHSHILKLGFISHVYVATSLLHEYVVTS--FGFARKLFDELPERNAVTWNTMIKGYS 92
+ LH+ +K G I A ++ +S +AR +F ++PE N WNT+++ +
Sbjct: 35 LKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILRILA 94
Query: 93 KSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIG 152
++ + +L + A L LF M+ + + P++ T
Sbjct: 95 ETND------------------------EHLQSEA----LMLFSAMLCDGRVKPNRFTFP 126
Query: 153 AVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC-------------- 198
+VL C+ L GK HG IVK + +E + + LV MY C
Sbjct: 127 SVLKACARASR--LREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNV 184
Query: 199 ---------------------------------GFLKYALMVFELMEERNVISWTALICG 225
G +K A +F+ M R+V+SW +I G
Sbjct: 185 VDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISG 244
Query: 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP 285
A G+ +A++LF+ MQ++ + PN +T VL A G ++ G K+ + + +E
Sbjct: 245 YAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELG-KWIHLYAGKNKVEI 303
Query: 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
+VD++ K G +++A +V T+ + N I W + + A H
Sbjct: 304 DDVLGSALVDMYSKCGSIDKALQVFETLP-KRNAITWSAIIGAFAMH 349
>gi|347954496|gb|AEP33748.1| chloroplast biogenesis 19, partial [Capsella bursa-pastoris]
Length = 489
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 150/398 (37%), Positives = 246/398 (61%), Gaps = 12/398 (3%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLT--VIHHLHSHILKLGFI-SHVYVATSLLHE 60
FS M V + + + +L C F++ + + LH + KLG +HV V T++L
Sbjct: 48 FSDMRLAGVEPNHITFIALLSGCGDFSSGSEALGDLLHGYACKLGHDRTHVMVGTAILGM 107
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y S AR +FD + ++N+VTWNTMI GY ++G V A F++MP R++ SW+AMI
Sbjct: 108 YSKHSRVKKARLVFDYMEDKNSVTWNTMIDGYMRNGQVDNAVKMFDKMPERDLISWTAMI 167
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
++ G ++ L FREM G+ PD + I A L+ C++LG+ L G H +++
Sbjct: 168 NGFVKKGFHEEALAWFREM-QISGVKPDYVAIIAALNACTNLGA--LSFGLWVHRYVMSQ 224
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+++ N +++ L+D+Y +CG +++A VF+ ME+R V+SW ++I G A G + ++L F
Sbjct: 225 DFKNNVKVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYF 284
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MQ G KP+ +TFTG LTAC H GLV+EG +YF+ + ++ + PRI+HYGC+VDL+ +
Sbjct: 285 RKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSR 344
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFD-MAERVIKQALRM-VKPENDGGV 357
AG LEEA +V+++M ++PN ++ GS LAAC+ H +AER++K + VK ++
Sbjct: 345 AGRLEEALKVVQSMPMKPNEVVIGSLLAACRTHGNNTVLAERLMKHLSDVNVKGHSN--- 401
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++ ++Y + KWEGA ++R+ M ++K G S I
Sbjct: 402 YVILSNMYAADGKWEGASQMRRKMKGLGLKKQPGFSSI 439
>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 159/457 (34%), Positives = 238/457 (52%), Gaps = 69/457 (15%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-- 61
F QM + + D+F+ +LK+CT ++L ++ +H+H+ K GF ++V SL+ Y
Sbjct: 108 FFQMQKNGLFPDNFTYPFLLKACTGPSSLPLVRMIHAHVEKFGFYGDIFVPNSLIDSYSR 167
Query: 62 --------------------VVT------------SFGFARKLFDELPERNAVTWNTMIK 89
VVT A KLFDE+PER+ V+WNTM+
Sbjct: 168 CGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKLFDEMPERDMVSWNTMLD 227
Query: 90 GYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF-------------- 135
GY+K+G + A + FERMP RN+ SWS M+ Y G D LF
Sbjct: 228 GYAKAGEMDRAFELFERMPQRNIVSWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLWTTI 287
Query: 136 ----------REM------ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
RE + GL PD + ++L+ C+ G +GL GK H + +
Sbjct: 288 IAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAACAESGMLGL--GKRIHASMRRW 345
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFE-LMEERNVISWTALICGSAHRGYSEDALSL 238
+ ++ +DMYAKCG L A VF +M +++V+SW ++I G A G+ E AL L
Sbjct: 346 RFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALEL 405
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F M G +P+ TF G+L AC H GLV+EGRKYF +++ Y + P+++HYGCM+DL G
Sbjct: 406 FSRMVPEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLG 465
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+ G L+EA+ ++R+M +EPN II G+ L AC+ H D A V +Q + V+P D G +
Sbjct: 466 RGGHLKEAFTLLRSMPMEPNAIILGTLLNACRMHNDVDFARAVCEQLFK-VEP-TDPGNY 523
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+L+ ++Y W VR M+N +K G+S I
Sbjct: 524 SLLSNIYAQAGDWMNVANVRLQMMNTGGQKPSGASSI 560
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 73/396 (18%), Positives = 158/396 (39%), Gaps = 69/396 (17%)
Query: 30 NNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMI 88
+NL ++ +H+ +LK ++VA L+ + + A +F+ +P N +N++I
Sbjct: 32 SNLDSVNQIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSII 91
Query: 89 KGYS--KSGNVCEARDFFERMP---LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEG 143
+ ++ S FF+ + ++ ++ A + P +++ + G
Sbjct: 92 RAHAHNTSHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPSSL-PLVRMIHAHVEKFG 150
Query: 144 LTPDQMTIGAVLSGCSHLGSVGL---------------LMGKSAHGFIVK---------- 178
D +++ S GS GL + S G +V+
Sbjct: 151 FYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKL 210
Query: 179 -NEWELNEQIA-TILVDMYAKCGFLKYALMVFELMEERNVISWTALIC------------ 224
+E + ++ ++D YAK G + A +FE M +RN++SW+ ++C
Sbjct: 211 FDEMPERDMVSWNTMLDGYAKAGEMDRAFELFERMPQRNIVSWSTMVCGYSKGGDMDMAR 270
Query: 225 -------------------GSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG 265
G A +G+ +A L+ M+ G++P++ +L AC +G
Sbjct: 271 VLFDRCPAKNVVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAACAESG 330
Query: 266 LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSF 325
++ G++ + + + +D++ K G L+ A++V M + +V+ W S
Sbjct: 331 MLGLGKRIHASM-RRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSM 389
Query: 326 LAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
+ H E+ ++ RMV + +T +
Sbjct: 390 IQGFAMHGH---GEKALELFSRMVPEGFEPDTYTFV 422
>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 143/415 (34%), Positives = 235/415 (56%), Gaps = 40/415 (9%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG------- 67
+ F+ + K+C+ + +H H++K G S V++ ++ + Y SFG
Sbjct: 131 NKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMY--ASFGRLEDARK 188
Query: 68 --------------------------FARKLFDELPERNAVTWNTMIKGYSKSGNVCEAR 101
A+ LF ++P +N +WN MI G +K GN+ +AR
Sbjct: 189 MFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDAR 248
Query: 102 DFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHL 161
F+ M R+ SWS+M+ Y++AG Y L++F++M E P + + +VL+ CS++
Sbjct: 249 KLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQM-QREETRPGRFILSSVLAACSNI 307
Query: 162 GSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTA 221
G++ G+ H ++ +N +L+ + T L+DMYAKCG L VFE M+ER + +W A
Sbjct: 308 GAID--QGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNA 365
Query: 222 LICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY 281
+I G A G +EDAL LF +Q +KPN +T GVLTAC H G VD+G + F+ + E Y
Sbjct: 366 MIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFY 425
Query: 282 DLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERV 341
++P ++HYGCMVDL G++G EA ++I +M ++PN +WG+ L AC+ H FD+AERV
Sbjct: 426 GVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERV 485
Query: 342 IKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
K L + +P+N G + L+ ++Y +++ ++RKLM N+ ++ G S++
Sbjct: 486 GKILLEL-EPQNS-GRYVLLSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVD 538
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 88/371 (23%), Positives = 159/371 (42%), Gaps = 55/371 (14%)
Query: 10 QSVPSDSFSILHILK--SCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV---VT 64
+++P+ +LK +L + LH+ +L+ G YV+ +LL Y +
Sbjct: 22 KNIPTSKLPQKTVLKLFDSKSITSLQYLTQLHALVLRSGHFQDHYVSGALLKCYANPHFS 81
Query: 65 SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR---NVASWSAMIAA 121
+F FA K+F +P N WN +IKG ++ + +A F+ RM + N ++ + A
Sbjct: 82 NFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDARPNKFTYPTLFKA 141
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV----------------- 164
A A G ++ ++ + G+ D A + + G +
Sbjct: 142 CSVAQAVQEGRQIHGHVVKH-GIGSDVHIKSAGIQMYASFGRLEDARKMFYSGESDVVCW 200
Query: 165 ----------GLLMGKSAHGFI----VKNEWELNEQIATILVDMYAKCGFLKYALMVFEL 210
G+L ++A G VKN N ++++ AK G L A +F+
Sbjct: 201 NTMIDGYLKCGVL--EAAKGLFAQMPVKNIGSWN-----VMINGLAKGGNLGDARKLFDE 253
Query: 211 MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
M ER+ ISW++++ G G ++AL +F+ MQ +P + VL AC + G +D+G
Sbjct: 254 MSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQG 313
Query: 271 R---KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
R Y K + D ++D++ K G L+ +EV M+ E + W + +
Sbjct: 314 RWVHAYLKRNSIKLDAVLGT----ALLDMYAKCGRLDMGWEVFEEMK-EREIFTWNAMIG 368
Query: 328 ACKEHKQFDMA 338
H + + A
Sbjct: 369 GLAIHGRAEDA 379
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 15/177 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+++F QM R+ F + +L +C++ + +H+++ + + T+LL
Sbjct: 279 LEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDM 338
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP----LRNVASW 115
Y ++F+E+ ER TWN MI G + G +A + F ++ N +
Sbjct: 339 YAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITL 398
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSA 172
++ A +AG D GL++F+ M G+ P+ H G + L+G+S
Sbjct: 399 VGVLTACAHAGFVDKGLRIFQTMREFYGVDPE----------LEHYGCMVDLLGRSG 445
>gi|115447355|ref|NP_001047457.1| Os02g0620800 [Oryza sativa Japonica Group]
gi|47847758|dbj|BAD21535.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|47847799|dbj|BAD21575.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536988|dbj|BAF09371.1| Os02g0620800 [Oryza sativa Japonica Group]
Length = 530
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 143/382 (37%), Positives = 225/382 (58%), Gaps = 6/382 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF +M R+ P+ + + ++ + ++ +H H K GF H ++ TSLL
Sbjct: 99 LALFLRMLRRGRPAPNQFVYPLVLRAACAIGVQLVRSIHCHACKDGFYGHDFIRTSLLDG 158
Query: 61 YVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y G ARKLFD L +RN V+W ++ GY+++G V +A FERMP R+V +W+A+I
Sbjct: 159 YSRYGMMGDARKLFDGLTDRNVVSWTALVSGYARAGKVGDAIVLFERMPQRDVPAWNAII 218
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A G + + +FR M+ +EG P+ T+ +LS C HLG L +GK HG+ ++
Sbjct: 219 AGCTQNGLFVEAVGIFRRMV-DEGFRPNGTTVSCLLSACGHLGM--LKIGKVIHGYAWRS 275
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ L+DMY KCG L A +F+ +R + +W +LI A G SE A+++F
Sbjct: 276 CVGFGSSVVNGLIDMYGKCGNLMEAKWIFDAFSDRGLTTWNSLINCLALHGCSESAIAVF 335
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M+ GV+P+E+TF G+L AC H G VDEG +YF+++ +E+ +EP I+HYGC+VDL +
Sbjct: 336 NSMRNEGVQPDEVTFVGLLNACTHGGFVDEGLRYFELMCDEHGIEPEIEHYGCVVDLLCR 395
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG ++A I M+++P+ +IWGS L AC+ H+ ++AE I+ L + P N V
Sbjct: 396 AGRFQDAMNFINDMKVQPDEVIWGSLLNACRIHRHLELAEHAIRNLLDL-NPSNANYV-V 453
Query: 360 LICDLYTMNEKWEGAERVRKLM 381
++ +LY+ WE +VRKLM
Sbjct: 454 MLANLYSEGGFWEEVRKVRKLM 475
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 116/279 (41%), Gaps = 42/279 (15%)
Query: 31 NLTVIHHLHSHILKLGFISHVYVATSLLH--EYVVTSFGFARKLFDELPERNAVTWNTMI 88
L + LH+H + G + LL ++ +AR+LFD P N ++ M+
Sbjct: 22 TLAHLKQLHAHAVVTGRAAAQTTTFHLLRFASLRLSCLPYARRLFDATPSPNVFLYSAML 81
Query: 89 KGYSKSGNVCE--ARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
Y+ + + + ARD L LF M+ P
Sbjct: 82 SAYAAASSHSQEHARD----------------------------SLALFLRMLRRGRPAP 113
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
+Q VL ++G+ + +S H K+ + ++ I T L+D Y++ G + A
Sbjct: 114 NQFVYPLVLRAAC---AIGVQLVRSIHCHACKDGFYGHDFIRTSLLDGYSRYGMMGDARK 170
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
+F+ + +RNV+SWTAL+ G A G DA+ LFE M V + ++ C GL
Sbjct: 171 LFDGLTDRNVVSWTALVSGYARAGKVGDAIVLFERMPQRDVP----AWNAIIAGCTQNGL 226
Query: 267 VDEGRKYF-KMIDEEYDLEPRIQHYGCMVDLFGKAGFLE 304
E F +M+DE + P C++ G G L+
Sbjct: 227 FVEAVGIFRRMVDEGF--RPNGTTVSCLLSACGHLGMLK 263
>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 874
Score = 281 bits (718), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 140/399 (35%), Positives = 246/399 (61%), Gaps = 11/399 (2%)
Query: 2 QLFSQMHR--QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+LF +M + + V +S +++ +L +C+ +L +++ +K G + + + L
Sbjct: 223 RLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALI 282
Query: 60 EYVVT--SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
+ + AR +FDE+ R+ ++W +++ G++ + + AR +F++MP R+ SW+A
Sbjct: 283 DMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTA 342
Query: 118 MIAAYLNAGAYDPGLKLFREM-ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
MI YL + L LFR+M +SN + PD+ T+ ++L+ C+HLG++ L G+ A +I
Sbjct: 343 MIDGYLRMNRFKEVLTLFRDMQMSN--VKPDEFTMVSILTACAHLGALEL--GEWAKTYI 398
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
KN+ + + I L+DMY KCG ++ A +F M++++ +WTA+I G A+ G+ E+AL
Sbjct: 399 DKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEAL 458
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
++F M V P+E+T+ GV+ AC H GLV +G+ +F + ++ ++P + HYGCMVDL
Sbjct: 459 TMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDL 518
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
G+AG L+EA EVI M ++PN I+WGS L AC+ HK +AE + L + +PEN G
Sbjct: 519 LGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILEL-EPEN-GA 576
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
V+ L+C++Y +KW+ VRK+M+ + ++K G S++
Sbjct: 577 VYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLM 615
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 94/399 (23%), Positives = 170/399 (42%), Gaps = 59/399 (14%)
Query: 1 MQLFSQMHRQSVPSDSF--SILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL 58
+ LF + + P SF S + +L++C N + I+ +HS +K G S+ T ++
Sbjct: 18 LSLFLKRMISNTPLHSFVKSPISLLETC---NTMYEINQIHSQTIKTGLSSNHLFLTKVI 74
Query: 59 HEYVVTSFG---FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASW 115
G +ARK+FDE+P+ + WNTMIKGYS+
Sbjct: 75 IFCCTKESGDVYYARKVFDEIPQPSVFIWNTMIKGYSR---------------------- 112
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCS-----HLGSVGLLMGK 170
+ G+ L++ M+ + + PD T +L G + G V LL
Sbjct: 113 ---------INCSESGVSLYKLMLVH-NIKPDGFTFPFLLKGFTKDMALKYGKV-LLNHA 161
Query: 171 SAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRG 230
HGF+ N + + + +++ CG + YA +F++ + V++W ++ G
Sbjct: 162 VIHGFLDSNLF-----VQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFK 216
Query: 231 YSEDALSLFEMMQ--ATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQ 288
E++ LF M+ V PN +T +L+AC + G+ + +E +EP +
Sbjct: 217 RYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLI 276
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348
++D+F G ++ A V M+ +VI W S + + D+A + Q
Sbjct: 277 LENALIDMFASCGEMDAARGVFDEMKTR-DVISWTSIVTGFANTCRIDLARKYFDQM--- 332
Query: 349 VKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVR 387
PE D +T + D Y +++ + + M NV+
Sbjct: 333 --PERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVK 369
>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 663
Score = 281 bits (718), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 132/394 (33%), Positives = 236/394 (59%), Gaps = 6/394 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+F +M + D F+++ +L T N + +H H++ G V +L+ Y
Sbjct: 222 MFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYA 281
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+ A+ +FD++ +++ V+W MI Y+ G + A +FF +MP +NV SW+++I
Sbjct: 282 KCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWC 341
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
++ G Y + LF M + G+ + T+ A+LS CSH+G + L GK AH +I N
Sbjct: 342 HVQEGLYAEAVDLFYRM-CDSGVMANDTTLVAILSSCSHMGDLAL--GKQAHSYIFDNNI 398
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
L+ + ++DMYAKCG L+ A+ VF M E+N +SW +I A GY ++A+ +FE
Sbjct: 399 TLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEK 458
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
MQA+GV P+E+TFTG+L+AC H+GLVD G+ YF++++ + + P ++HY CMVDL G+ G
Sbjct: 459 MQASGVCPDEITFTGLLSACSHSGLVDTGQHYFEIMNLTFGISPDVEHYACMVDLLGRRG 518
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L EA +I+ M ++P+V++W + L AC+ + + ++++KQ L + + + G++ L+
Sbjct: 519 LLGEAISLIKKMPVKPDVVVWSALLGACRTYGNLAIGKQIMKQLLELGR--YNSGLYVLL 576
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y+ +++W+ + + K++ ++K R S I
Sbjct: 577 SNMYSESQRWDDMKNIWKILDQNGIKKCRAISFI 610
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 147/340 (43%), Gaps = 48/340 (14%)
Query: 16 SFSILHILKSCTHFN---------NLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTS 65
S +IL LKS TH +L + H+H+ I+ G + V L+ V +
Sbjct: 24 SKTILQELKSPTHQTLHYLIDQCISLKQLKHVHAQIILHGLATQVLTLGKLVSSSVQLRD 83
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
+A KLFD++P+ N +N + I Y N+
Sbjct: 84 LRYAHKLFDQIPQPNKFMFNHL-------------------------------IKGYSNS 112
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
L L+R M+ +G+ P+Q TI VL C+ L G H K +
Sbjct: 113 SDPIKSLLLYRRMVC-DGILPNQFTIPFVLKACAAKSCYWL--GVCVHAQSFKLGMGSHA 169
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
+ ++++Y CG + A VF+ + ER ++SW ++I G + G SE+A+ +F MQ
Sbjct: 170 CVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEV 229
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGR-KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLE 304
G++P+ T G+L+ G D GR + M+ +++ + + ++D++ K G L+
Sbjct: 230 GLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTN--ALMDMYAKCGNLK 287
Query: 305 EAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
A V M L+ +V+ W + A H D A Q
Sbjct: 288 CAKSVFDQM-LDKDVVSWTCMINAYANHGLIDCALEFFNQ 326
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 104/241 (43%), Gaps = 43/241 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF +M V ++ +++ IL SC+H +L + HS+I + +++
Sbjct: 352 VDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIIDM 411
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + A +F +PE+NAV+WN +I + G EA + FE+M
Sbjct: 412 YAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKM------------ 459
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
G+ PD++T +LS CSH G L+ H F + N
Sbjct: 460 --------------------QASGVCPDEITFTGLLSACSHSG----LVDTGQHYFEIMN 495
Query: 180 -EWELNEQIA--TILVDMYAKCGFLKYALMVFELMEER-NVISWTALICGSAHRGYSEDA 235
+ ++ + +VD+ + G L A+ + + M + +V+ W+AL+ A R Y A
Sbjct: 496 LTFGISPDVEHYACMVDLLGRRGLLGEAISLIKKMPVKPDVVVWSALL--GACRTYGNLA 553
Query: 236 L 236
+
Sbjct: 554 I 554
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 281 bits (718), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 140/396 (35%), Positives = 222/396 (56%), Gaps = 35/396 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ F++M + + +S +++ +L +C H L +H + ++ GF
Sbjct: 307 LAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGF------------- 353
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
E N V N ++ Y+K GNV A FERMP +NV +W+A+I+
Sbjct: 354 -----------------ESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIIS 396
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y G L LF EM + +G+ PD I +VL C+H + L GK HG+ +++
Sbjct: 397 GYSQHGHPHEALALFIEMQA-QGIKPDSFAIVSVLPACAHF--LALEQGKQIHGYTIRSG 453
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+E N + T LVD+YAKCG + A +FE M E++V+SWT +I G+ EDAL+LF
Sbjct: 454 FESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFS 513
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
MQ TG K + + FT +LTAC H GLVD+G +YF+ + +Y L P+++HY C+VDL G+A
Sbjct: 514 KMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRA 573
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G L+EA +I+ M LEP+ +WG+ L AC+ H ++ E+ K + P+N G + L
Sbjct: 574 GHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFEL-DPDN-AGYYVL 631
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
+ ++Y ++WE ++RK+M + V+K G SV++
Sbjct: 632 LSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVA 667
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/333 (30%), Positives = 165/333 (49%), Gaps = 37/333 (11%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L+ QM R + D L ++K+C ++L +H I+ GF S V V T+L
Sbjct: 105 LRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALA-- 162
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
Y+K G++ AR F+RMP R+V SW+A+IA
Sbjct: 163 ----------------------------SMYTKCGSLENARQVFDRMPKRDVVSWNAIIA 194
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y G L LF EM N G+ P+ T+ +V+ C+HL + L GK H + +++
Sbjct: 195 GYSQNGQPYEALALFSEMQVN-GIKPNSSTLVSVMPVCAHL--LALEQGKQIHCYAIRSG 251
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
E + + LV+MYAKCG + A +FE M R+V SW A+I G + +AL+ F
Sbjct: 252 IESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFN 311
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MQ G+KPN +T VL AC H +++G++ + I ++ + + +V+++ K
Sbjct: 312 RMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGN--ALVNMYAK 369
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
G + AY++ M + NV+ W + ++ +H
Sbjct: 370 CGNVNSAYKLFERMP-KKNVVAWNAIISGYSQH 401
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 142/325 (43%), Gaps = 25/325 (7%)
Query: 31 NLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPERNAVTWNTMIKG 90
N HH H H + + Y + L VV RN V
Sbjct: 21 NQISFHHTHLHSISYHVCFYFYGPSPLPTSTVVAQL-----------RRNKVK------- 62
Query: 91 YSKSGNVCEARDFFERMPLRNVAS-WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQM 149
++ + C + F + +RN A W I Y+ G ++ L+L+ +M G+ PD++
Sbjct: 63 TTREVSACANQTQFTQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQM-QRTGINPDKL 121
Query: 150 TIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFE 209
+V+ C L G+ H I+ +E + + T L MY KCG L+ A VF+
Sbjct: 122 VFLSVIKACG--SQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFD 179
Query: 210 LMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
M +R+V+SW A+I G + G +AL+LF MQ G+KPN T V+ C H +++
Sbjct: 180 RMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQ 239
Query: 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAAC 329
G++ +E + +V+++ K G + A+++ M + +V W + +
Sbjct: 240 GKQ-IHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIR-DVASWNAIIGGY 297
Query: 330 KEHKQFDMAERVI-KQALRMVKPEN 353
+ Q A + +R +KP +
Sbjct: 298 SLNSQHHEALAFFNRMQVRGIKPNS 322
>gi|357131180|ref|XP_003567218.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Brachypodium distachyon]
Length = 474
Score = 281 bits (718), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 146/397 (36%), Positives = 241/397 (60%), Gaps = 8/397 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF HR ++ D+++ + L++C LH +++ GF H YV TSL++
Sbjct: 80 LNLFRDAHR-NMADDTYAFMFSLRACAGLAWPWTGAQLHGLVIRKGFEFHAYVHTSLINT 138
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
YVV AR FDE+P +N V+WN MI G++ G + AR FERMP RNV SW+ +I
Sbjct: 139 YVVCGCLVDARMAFDEMPVKNVVSWNVMITGFAGRGEIEYARLLFERMPSRNVVSWTGLI 198
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y + + L R M++ EG++P ++T+ AV+ S +G + LMG++ HG+ KN
Sbjct: 199 DGYTRSCHSVEAVALLRRMMA-EGISPTEITVLAVVPAISDIGRI--LMGETLHGYCEKN 255
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFE-LMEERNVISWTALICGSAHRGYSEDALSL 238
L+ ++ L+D+YAK G ++ +L VF ++ RN++SWT++I G A G S +A+ L
Sbjct: 256 GLVLDIRVGNSLIDLYAKIGSIQSSLKVFHGMLNRRNLVSWTSIISGFAMHGLSTEAVEL 315
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F M+ +G++PN +TF VL AC H GLV++G ++FK + EY++ P I+H+GC++D+ G
Sbjct: 316 FAEMRRSGIRPNRVTFLSVLNACSHGGLVEQGVEFFKSMVYEYNINPEIKHFGCIIDMLG 375
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG L EA +VI + +E N I+W + LA C ++ + +M +R +K+ L + GG F
Sbjct: 376 RAGRLCEAEQVIGGLPMEVNSIVWRTLLACCSKYGEVEMGKRAMKKILHTER--ESGGDF 433
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++ ++ T ++ AER RKL+ +N K G +++
Sbjct: 434 VVVSNMLTELGRFSDAERSRKLLDERNAVKVPGLALV 470
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 108/264 (40%), Gaps = 40/264 (15%)
Query: 100 ARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCS 159
A F+R P W A++ AY + L LFR+ ++ + D L C+
Sbjct: 52 AHQVFDRRP----TPWHALLKAYSHGPFPQEALNLFRD--AHRNMADDTYAFMFSLRACA 105
Query: 160 HLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFL------------------ 201
G G HG +++ +E + + T L++ Y CG L
Sbjct: 106 --GLAWPWTGAQLHGLVIRKGFEFHAYVHTSLINTYVVCGCLVDARMAFDEMPVKNVVSW 163
Query: 202 -------------KYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
+YA ++FE M RNV+SWT LI G +S +A++L M A G+
Sbjct: 164 NVMITGFAGRGEIEYARLLFERMPSRNVVSWTGLIDGYTRSCHSVEAVALLRRMMAEGIS 223
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P E+T V+ A G + G E+ L I+ ++DL+ K G ++ + +
Sbjct: 224 PTEITVLAVVPAISDIGRILMGETLHGYC-EKNGLVLDIRVGNSLIDLYAKIGSIQSSLK 282
Query: 309 VIRTMRLEPNVIIWGSFLAACKEH 332
V M N++ W S ++ H
Sbjct: 283 VFHGMLNRRNLVSWTSIISGFAMH 306
>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
Length = 569
Score = 281 bits (718), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 144/405 (35%), Positives = 236/405 (58%), Gaps = 16/405 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L+++M + F+ ++ C L +H ++ G+ ++V+V TSL++
Sbjct: 117 VELYNRMVEAEAEPNEFTYSFLIGGCARSXLLREGEQVHGRVVANGYCTNVFVRTSLVNL 176
Query: 61 YVVTSFGF-----ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASW 115
Y + G+ AR++FDE+ +RN V+WN+++ GY + G+V AR F+ MP RNV SW
Sbjct: 177 YAIAG-GYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSW 235
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
+ MIA G L LF EM G+ DQ+ + A LS C+ LG L +G H +
Sbjct: 236 TTMIAGCAQIGRCKQALHLFHEM-RRAGVKLDQVALVAALSACAELGD--LKLGTWIHSY 292
Query: 176 IVKNEWELNE----QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGY 231
I + N+ + L+ MYA CG + A VF M++R+ ISWT++I G A +G+
Sbjct: 293 IDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGH 352
Query: 232 SEDALSLFEMMQATGV---KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQ 288
+E+AL +F+ MQ G +P+ +TF GVL AC H G VD+GR +F+ +++++ + PRI+
Sbjct: 353 AEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRIE 412
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348
HYGCMVDL +AGFL+EA+ + +M ++PN +WG+ L C+ HK ++A V ++ +
Sbjct: 413 HYGCMVDLLSRAGFLDEAHRLXESMPMKPNDAVWGALLGGCRIHKNAELASHVAQKLVLE 472
Query: 349 VKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
+KP+ G L+ ++Y ++W+ VR+ M+ VRK G S
Sbjct: 473 LKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRS 517
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 88/375 (23%), Positives = 151/375 (40%), Gaps = 75/375 (20%)
Query: 27 THFNNLTV--IHHLHSHILKLGFISHVYVATSLLHEYVVT-SFGFARKLFDELPERNAVT 83
TH T+ + +H+ I+ GF ++ LL Y+ + + A K+F+ + +
Sbjct: 40 THITCDTIKKLKQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPSTTV 99
Query: 84 WNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEG 143
WN MI+G+S+S P + V +L+ M+ E
Sbjct: 100 WNQMIRGHSQS-----------ETPHKLV--------------------ELYNRMVEAEA 128
Query: 144 LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA------- 196
P++ T ++ GC+ S L G+ HG +V N + N + T LV++YA
Sbjct: 129 -EPNEFTYSFLIGGCAR--SXLLREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDG 185
Query: 197 ---------------------------KCGFLKYALMVFELMEERNVISWTALICGSAHR 229
+CG + A +F+ M ERNV+SWT +I G A
Sbjct: 186 VRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQI 245
Query: 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR--- 286
G + AL LF M+ GVK +++ L+AC G + G IDE +
Sbjct: 246 GRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLL 305
Query: 287 IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQAL 346
+ ++ ++ G +++AY+V M+ + + I W S + + + A V +
Sbjct: 306 VSLNNSLIHMYASCGVIDKAYKVFIGMQ-QRSTISWTSMITGFAKQGHAEEALGVFQWMQ 364
Query: 347 RMVKPENDGGVFTLI 361
R+ E T I
Sbjct: 365 RLGTDEGRPDGITFI 379
>gi|222623259|gb|EEE57391.1| hypothetical protein OsJ_07563 [Oryza sativa Japonica Group]
Length = 748
Score = 280 bits (717), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 143/382 (37%), Positives = 225/382 (58%), Gaps = 6/382 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF +M R+ P+ + + ++ + ++ +H H K GF H ++ TSLL
Sbjct: 317 LALFLRMLRRGRPAPNQFVYPLVLRAACAIGVQLVRSIHCHACKDGFYGHDFIRTSLLDG 376
Query: 61 YVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y G ARKLFD L +RN V+W ++ GY+++G V +A FERMP R+V +W+A+I
Sbjct: 377 YSRYGMMGDARKLFDGLTDRNVVSWTALVSGYARAGKVGDAIVLFERMPQRDVPAWNAII 436
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A G + + +FR M+ +EG P+ T+ +LS C HLG L +GK HG+ ++
Sbjct: 437 AGCTQNGLFVEAVGIFRRMV-DEGFRPNGTTVSCLLSACGHLGM--LKIGKVIHGYAWRS 493
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ L+DMY KCG L A +F+ +R + +W +LI A G SE A+++F
Sbjct: 494 CVGFGSSVVNGLIDMYGKCGNLMEAKWIFDAFSDRGLTTWNSLINCLALHGCSESAIAVF 553
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M+ GV+P+E+TF G+L AC H G VDEG +YF+++ +E+ +EP I+HYGC+VDL +
Sbjct: 554 NSMRNEGVQPDEVTFVGLLNACTHGGFVDEGLRYFELMCDEHGIEPEIEHYGCVVDLLCR 613
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG ++A I M+++P+ +IWGS L AC+ H+ ++AE I+ L + P N V
Sbjct: 614 AGRFQDAMNFINDMKVQPDEVIWGSLLNACRIHRHLELAEHAIRNLLDL-NPSNANYV-V 671
Query: 360 LICDLYTMNEKWEGAERVRKLM 381
++ +LY+ WE +VRKLM
Sbjct: 672 MLANLYSEGGFWEEVRKVRKLM 693
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 125/305 (40%), Gaps = 48/305 (15%)
Query: 5 SQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH--EYV 62
+ HR +D + LH + H + LH+H + G + LL
Sbjct: 220 PRRHRSPPTADFVAALHRCATLAH------LKQLHAHAVVTGRAAAQTTTFHLLRFASLR 273
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCE--ARDFFERMPLRNVASWSAMIA 120
++ +AR+LFD P N ++ M+ Y+ + + + ARD
Sbjct: 274 LSCLPYARRLFDATPSPNVFLYSAMLSAYAAASSHSQEHARD------------------ 315
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
L LF M+ P+Q VL ++G+ + +S H K+
Sbjct: 316 ----------SLALFLRMLRRGRPAPNQFVYPLVLRAAC---AIGVQLVRSIHCHACKDG 362
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ ++ I T L+D Y++ G + A +F+ + +RNV+SWTAL+ G A G DA+ LFE
Sbjct: 363 FYGHDFIRTSLLDGYSRYGMMGDARKLFDGLTDRNVVSWTALVSGYARAGKVGDAIVLFE 422
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF-KMIDEEYDLEPRIQHYGCMVDLFGK 299
M V + ++ C GL E F +M+DE + P C++ G
Sbjct: 423 RMPQRDVP----AWNAIIAGCTQNGLFVEAVGIFRRMVDEGF--RPNGTTVSCLLSACGH 476
Query: 300 AGFLE 304
G L+
Sbjct: 477 LGMLK 481
>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 552
Score = 280 bits (717), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 143/396 (36%), Positives = 239/396 (60%), Gaps = 6/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF +M +V +DS +++ + + + + +L +I + G + +Y+ +L+
Sbjct: 158 LDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDM 217
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y FA ++F ++ E+N V+WN MI GY+K GN+ A+ F MP R+V SW++MI
Sbjct: 218 YGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMI 277
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y A + +KLF+EM+ + + PD++T+ LS C+HLGS L G++ H +I K+
Sbjct: 278 IGYSLAKQHAEAVKLFQEMMVSM-VKPDEITVATALSACAHLGS--LDAGEAVHDYIRKH 334
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + + + L+DMY KCG ++ AL VF M+ R+ +SWT++I G A G++E AL++F
Sbjct: 335 DIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVF 394
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+ M G+ P TF GVL AC H GLVD+G ++FK ++ Y L P ++HYGC+VDL +
Sbjct: 395 DQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYGCVVDLLCR 454
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
+G+L+ AY I+ M + P+V+IW L+ACK H +AE ++ + L ++ P N+G +
Sbjct: 455 SGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHGNLVLAE-IVSKKLLVLDPSNNGN-YV 512
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L Y +++W+ ++RKLM N++K S I
Sbjct: 513 LSSSTYAGSDRWDDVIKIRKLMEVTNLQKPCAYSSI 548
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 94/353 (26%), Positives = 168/353 (47%), Gaps = 16/353 (4%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ ++ M+ + + + + + KSC +++ + H +KLGF S +V+ +L+H
Sbjct: 57 IHFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVHSMKLGFESXSFVSNALIHM 116
Query: 61 YVV-TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
YV A+K+FD + ER+ V+WN++I GY + + D F M NV + S +
Sbjct: 117 YVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTM 176
Query: 120 AAYLNAGAYDPGLKL---FREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL--MGKSAHG 174
++A + ++ + I G+ D + +G L G G++ G+ +
Sbjct: 177 MKAISATCFLSEWEMGDYLVKYIDEHGVVVD-LYLGNTL--IDMYGRRGMIDFAGRVFYQ 233
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
KN N I YAK G L A +F M R+VISWT++I G + +
Sbjct: 234 MKEKNIVSWNAMIMG-----YAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAE 288
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
A+ LF+ M + VKP+E+T L+AC H G +D G I ++D++ + ++
Sbjct: 289 AVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYI-RKHDIKSDVFVGNSLI 347
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALR 347
D++ K G +E+A +V M+ +V W S ++ + + A V Q L+
Sbjct: 348 DMYCKCGVVEKALQVFNDMKTRDSV-SWTSIISGLAVNGFAESALNVFDQMLK 399
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 106/258 (41%), Gaps = 36/258 (13%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A +F+++ + WN MI G SKS +A F+ M +
Sbjct: 25 AHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYK------------------ 66
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
G+ +T + C+ + V G+ +K +E ++
Sbjct: 67 --------------GIQGSHLTFIFLFKSCARVSDVR--QGQMVRVHSMKLGFESXSFVS 110
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+ MY G L A VF+ M ER+V+SW ++ICG + L LF MQA V+
Sbjct: 111 NALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVR 170
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
+ +T ++A + G K ID E+ + + ++D++G+ G ++ A
Sbjct: 171 ADSVTMMKAISATCFLSEWEMGDYLVKYID-EHGVVVDLYLGNTLIDMYGRRGMIDFAGR 229
Query: 309 VIRTMRLEPNVIIWGSFL 326
V M+ E N++ W + +
Sbjct: 230 VFYQMK-EKNIVSWNAMI 246
>gi|242045040|ref|XP_002460391.1| hypothetical protein SORBIDRAFT_02g027420 [Sorghum bicolor]
gi|241923768|gb|EER96912.1| hypothetical protein SORBIDRAFT_02g027420 [Sorghum bicolor]
Length = 573
Score = 280 bits (717), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 143/400 (35%), Positives = 239/400 (59%), Gaps = 10/400 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFI-SHVYVATSLLH 59
++LF + R D + L SC + LH+H K GF+ SH V L+H
Sbjct: 63 LRLFDHLLRSGADPDPAAYELALASCARGKDRATAAQLHAHAAKRGFLASHRRVRCRLVH 122
Query: 60 EYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEA-RDFFERMPLRNVASWSA 117
Y V AR++FD + + V WN +++GY++ G + RDFF RMP R+ SW+
Sbjct: 123 AYAVCGMLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDADLLRDFFARMPSRDSVSWNT 182
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
+++ + G YD + +FREM++++ PD++T+ +V+S ++LG+ L G AH +++
Sbjct: 183 VLSLCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLGA--LAQGLWAHAYVI 240
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFE-LMEERNVISWTALICGSAHRGYSEDAL 236
+ E+ E++++ L++MY+KCGFL+ A+ VF+ + +R++ +W A++ G G S AL
Sbjct: 241 RKGVEVEEKLSSALINMYSKCGFLEGAVYVFDNVRGKRSLDTWNAMLAGFTANGCSGRAL 300
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
+LF M+ TG+ PN++TF +L AC H GLV+EG + F+ + Y +EP I HYGCMVDL
Sbjct: 301 ALFTRMETTGLMPNKITFNCILNACSHGGLVEEGMRCFQRMSRVYGIEPDIAHYGCMVDL 360
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVK-PENDG 355
F +AG E+A E+I+ M +EP+ + + L AC+ HK ++ + K R+++ ND
Sbjct: 361 FCRAGMFEKAEEIIQIMPMEPDASMLKALLGACRTHKNLELGK---KAGHRLIEAAPNDH 417
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ ++Y ++ W +VRKLML++ V K GSS +
Sbjct: 418 AGYVLLSNIYALDGNWGRVHKVRKLMLDRGVLKTPGSSSV 457
>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
Length = 534
Score = 280 bits (717), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 141/397 (35%), Positives = 236/397 (59%), Gaps = 7/397 (1%)
Query: 1 MQLFSQMHRQSVP-SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
++++ Q+ R+S D F+ + KSC + + +H H+ K G HV +L+
Sbjct: 93 IRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALID 152
Query: 60 EYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y+ A K+FDE+ ER+ ++WN+++ GY++ G + +A+ F M + + SW+AM
Sbjct: 153 MYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAM 212
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I+ Y G Y + FREM G+ PD++++ +VL C+ LGS L +GK H + +
Sbjct: 213 ISGYTGIGCYVEAMDFFREM-QLAGIEPDEISLISVLPSCAQLGS--LELGKWIHLYAER 269
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ + L++MY+KCG + A+ +F ME ++VISW+ +I G A+ G + A+
Sbjct: 270 RGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIET 329
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F MQ VKPN +TF G+L+AC H G+ EG +YF M+ ++Y +EP+I+HYGC++D+
Sbjct: 330 FNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLA 389
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG LE A E+ +TM ++P+ IWGS L++C+ D+A V L ++PE D G +
Sbjct: 390 RAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVA-LVAMDHLVELEPE-DMGNY 447
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y KWE R+RK++ N+N++K G S+I
Sbjct: 448 VLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLI 484
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 123/284 (43%), Gaps = 36/284 (12%)
Query: 100 ARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCS 159
A F ++ NV ++++I AY + Y ++++++++ PD+ T + C+
Sbjct: 61 ATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCA 120
Query: 160 HLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDM------------------------- 194
LGS L GK HG + K + L+DM
Sbjct: 121 SLGSCYL--GKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISW 178
Query: 195 ------YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
YA+ G +K A +F LM ++ ++SWTA+I G G +A+ F MQ G++
Sbjct: 179 NSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIE 238
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+E++ VL +C G ++ G K+ + E + +++++ K G + +A +
Sbjct: 239 PDEISLISVLPSCAQLGSLELG-KWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQ 297
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-VKP 351
+ M + +VI W + ++ H A + R VKP
Sbjct: 298 LFGQMEGK-DVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKP 340
>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 632
Score = 280 bits (717), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 148/382 (38%), Positives = 225/382 (58%), Gaps = 5/382 (1%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLF 73
D ++ +LK+C + +H + K G S+++V SL+ Y V A+KLF
Sbjct: 126 DEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLF 185
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
DE+ R+ V+WNT+I GY SG V +AR F+ M +N+ SWS MI+ Y Y ++
Sbjct: 186 DEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIE 245
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
LFR+M GL P+ +T+ +VLS C+HLG++ L GK H FI +N+ E+ + L D
Sbjct: 246 LFRQMQHEGGLAPNDVTLVSVLSACAHLGALDL--GKWIHRFIRRNKIEVGLFLGNALAD 303
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
MYAKCG + A VF M ER+VISW+ +I G A GY+ +A + F M G++PN+++
Sbjct: 304 MYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDIS 363
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
F G+LTAC H GLVD+G +YF M+ + Y + P+I+HYGC+VDL +AG L++A +I +M
Sbjct: 364 FMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSM 423
Query: 314 RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEG 373
++PNVI+WG+ L C+ +K + ERV+ + L + N G + ++Y + +
Sbjct: 424 PMQPNVIVWGALLGGCRIYKDAERGERVVWRILEL--DSNHSGSLVYLANVYASMGRLDD 481
Query: 374 AERVRKLMLNQNVRKARGSSVI 395
A R M + K G S I
Sbjct: 482 AASCRLRMRDNKSMKTPGCSWI 503
Score = 45.1 bits (105), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 10/216 (4%)
Query: 187 IATILVDMYAKCGFLKYALMVFE-LMEERNVISWTALICGSAHRGYSEDALSLF--EMMQ 243
IA + + + G L++++++F + N+ ++ AL+ + +S F +++
Sbjct: 60 IAVKFIGVSSSHGNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVL 119
Query: 244 ATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFL 303
P+E TFT VL AC V EG+K + +Y E + +VDL+ K G
Sbjct: 120 PNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFV-TKYGCESNLFVRNSLVDLYFKVGCN 178
Query: 304 EEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICD 363
A ++ M + +V+ W + ++ D A V + E + ++ +
Sbjct: 179 CIAQKLFDEMVVR-DVVSWNTLISGYCFSGMVDKARMVFDGMM-----EKNLVSWSTMIS 232
Query: 364 LYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLS 399
Y NEK+ A + + M ++ +++S LS
Sbjct: 233 GYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLS 268
>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 280 bits (717), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 146/397 (36%), Positives = 229/397 (57%), Gaps = 7/397 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F QM SV D ++ LKSC F+ + +H H+LK G +++ +L+H
Sbjct: 93 LTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHL 152
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNV-CEARDFFERMPLRNVASWSAM 118
Y AR L D + ER+ V+WN ++ Y++ G + +R F P++NV SW+AM
Sbjct: 153 YASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELASRRVFGETPVKNVVSWNAM 212
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I Y +AG + L LF +M + G+ PD T+ +VLS C+H+G+ L G+ H +I K
Sbjct: 213 ITGYSHAGRFSEVLVLFEDM-QHAGVKPDNCTLVSVLSACAHVGA--LSQGEWVHAYIDK 269
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
N ++ +AT LVDMY+KCG ++ AL VF +++ +W ++I G + G + AL +
Sbjct: 270 NGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQI 329
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F M G KPNE+TF VL+AC GL+DEGR+ F ++ + ++P I+HYGCMVDL G
Sbjct: 330 FSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLG 389
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+ G LEEA E+++ M + ++W S L AC+ H ++AERV ++ L + E+ F
Sbjct: 390 RVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLELSPQESSS--F 447
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y +W+ VR+ M Q VRK G S+I
Sbjct: 448 VQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMI 484
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/366 (25%), Positives = 149/366 (40%), Gaps = 66/366 (18%)
Query: 14 SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLF 73
S SF IL +++ +H H+HILK G I + A+ L+ S A
Sbjct: 2 SSSFPPPPILSFAEMATSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQA---- 57
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
+ A F R+P N W+ +I AY N+ + L
Sbjct: 58 -----------------------IPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALT 94
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
+F +M+ + + PD+ T L C G+ G+ HG ++K + I L+
Sbjct: 95 IFHQML-HASVLPDKYTFTFALKSCGSFS--GVEEGRQIHGHVLKTGLGDDLFIQNTLIH 151
Query: 194 MYAKCGFLKYALMVFELMEER--------------------------------NVISWTA 221
+YA CG ++ A + + M ER NV+SW A
Sbjct: 152 LYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELASRRVFGETPVKNVVSWNA 211
Query: 222 LICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE- 280
+I G +H G + L LFE MQ GVKP+ T VL+AC H G + +G ID+
Sbjct: 212 MITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNG 271
Query: 281 YDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAER 340
++ + +VD++ K G +E+A EV + L ++ W S ++ H A +
Sbjct: 272 ISIDGFVA--TALVDMYSKCGSIEKALEVFNSC-LRKDISTWNSIISGLSTHGSGQHALQ 328
Query: 341 VIKQAL 346
+ + L
Sbjct: 329 IFSEML 334
>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 534
Score = 280 bits (717), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 141/397 (35%), Positives = 235/397 (59%), Gaps = 7/397 (1%)
Query: 1 MQLFSQMHRQSVP-SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
++++ Q+ R+++ D F+ + KSC + + +H H+ K G HV +L+
Sbjct: 93 IRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCYLGKQVHGHLYKFGPRFHVVTENALID 152
Query: 60 EYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y+ A K+FDE+ ER+ ++WN+++ GY++ G + +A+ F M + + SW+AM
Sbjct: 153 MYMKFDDLVDAHKVFDEMSERDVISWNSLLSGYARLGQMKKAKGLFHLMIDKTIVSWTAM 212
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I+ Y G Y + FREM G+ PD++++ +VL C+HLGS+ L GK H + +
Sbjct: 213 ISGYTGIGCYVEAMDFFREM-QLAGIEPDEISLISVLPSCAHLGSLEL--GKWIHMYAER 269
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ L++MY+KCG L A+ +FE + ++VISW+ +I G A+ G + A
Sbjct: 270 RGLLKQTGVCNALIEMYSKCGMLSQAIQLFEQTKGKDVISWSTMISGYAYHGNAHRAFET 329
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F MQ VKPN +TF G+L+AC H GL +G KYF M+ ++Y +EP+I+HYGC++D+
Sbjct: 330 FIEMQRAKVKPNGITFLGLLSACSHVGLWQQGLKYFDMMRQDYQIEPKIEHYGCLIDVLA 389
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG LE A E+ +TM ++P+ IWGS L++C+ D+A V L V+P+ D G +
Sbjct: 390 RAGKLERAVEITKTMPVKPDSKIWGSLLSSCRTKGNLDVA-LVAMDHLVEVEPD-DMGNY 447
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y KWE R+RK++ +N++K G S+I
Sbjct: 448 VLLANIYADLGKWEDVSRLRKIIRKENMKKTPGCSLI 484
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 131/297 (44%), Gaps = 36/297 (12%)
Query: 87 MIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
M+ K G++ A F ++ NV ++++I AY + Y ++++++++ P
Sbjct: 48 MVDLCDKLGDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKTIEFP 107
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDM------------ 194
D+ T + C+ LGS L GK HG + K + L+DM
Sbjct: 108 DRFTFPFMFKSCASLGSCYL--GKQVHGHLYKFGPRFHVVTENALIDMYMKFDDLVDAHK 165
Query: 195 -------------------YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
YA+ G +K A +F LM ++ ++SWTA+I G G +A
Sbjct: 166 VFDEMSERDVISWNSLLSGYARLGQMKKAKGLFHLMIDKTIVSWTAMISGYTGIGCYVEA 225
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
+ F MQ G++P+E++ VL +C H G ++ G K+ M E L + +++
Sbjct: 226 MDFFREMQLAGIEPDEISLISVLPSCAHLGSLELG-KWIHMYAERRGLLKQTGVCNALIE 284
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA-ERVIKQALRMVKP 351
++ K G L +A ++ + +VI W + ++ H A E I+ VKP
Sbjct: 285 MYSKCGMLSQAIQLFEQTK-GKDVISWSTMISGYAYHGNAHRAFETFIEMQRAKVKP 340
>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 280 bits (716), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 140/382 (36%), Positives = 234/382 (61%), Gaps = 6/382 (1%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLF 73
D F+ ++KSC + +H H+ K G S+ V SL+ YV S A ++F
Sbjct: 116 DKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVF 175
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
+E+ ER+AV+WNT+I G+ + G + AR FE M + + SW+A+++ Y G Y L+
Sbjct: 176 EEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALE 235
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
FR M G+ PD++++ +VL C+ LG++ L GK H + K + N + L++
Sbjct: 236 FFRRM-QMVGIEPDEISLVSVLPDCAQLGALEL--GKWIHIYADKAGFLRNICVCNALIE 292
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
MYAKCG + +F+ M+ER+VISW+ +I G A+ G + +A+ LF+ MQ ++P+ +T
Sbjct: 293 MYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIIT 352
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
F G+LTAC H GL++EG +YF+ + +Y++EP ++HYGC+V+L G +G L++A E+++ M
Sbjct: 353 FVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKM 412
Query: 314 RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEG 373
+P+ IWGS L++C+ H +A ++ L + +P D G + L+ +LY KW+G
Sbjct: 413 PRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLLEL-EPA-DTGNYVLLSNLYADLGKWDG 470
Query: 374 AERVRKLMLNQNVRKARGSSVI 395
R+RKLM +++++K G S I
Sbjct: 471 VSRMRKLMRSKSMKKTPGCSSI 492
Score = 38.1 bits (87), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 73/164 (44%), Gaps = 7/164 (4%)
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR 229
K H IVK + + T +VD+ G +YA ++F+ + + N + A+I H
Sbjct: 31 KKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHN 90
Query: 230 GYSEDALSLFEMMQA-----TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLE 284
A+++++ M + P++ TF V+ +C D G++ + ++ +
Sbjct: 91 KVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHV-FKFGQK 149
Query: 285 PRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
+V+++ K L++A+ V M E + + W + ++
Sbjct: 150 SNTVVENSLVEMYVKCDSLDDAHRVFEEMT-ERDAVSWNTLISG 192
>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 593
Score = 280 bits (716), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 143/396 (36%), Positives = 239/396 (60%), Gaps = 6/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF +M +V +DS +++ + + + + +L +I + G + +Y+ +L+
Sbjct: 199 LDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDM 258
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y FA ++F ++ E+N V+WN MI GY+K GN+ A+ F MP R+V SW++MI
Sbjct: 259 YGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMI 318
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y A + +KLF+EM+ + + PD++T+ LS C+HLGS L G++ H +I K+
Sbjct: 319 IGYSLAKQHAEAVKLFQEMMVSM-VKPDEITVATALSACAHLGS--LDAGEAVHDYIRKH 375
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + + + L+DMY KCG ++ AL VF M+ R+ +SWT++I G A G++E AL++F
Sbjct: 376 DIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVF 435
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+ M G+ P TF GVL AC H GLVD+G ++FK ++ Y L P ++HYGC+VDL +
Sbjct: 436 DQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYGCVVDLLCR 495
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
+G+L+ AY I+ M + P+V+IW L+ACK H +AE ++ + L ++ P N+G +
Sbjct: 496 SGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHGNLVLAE-IVSKKLLVLDPSNNGN-YV 553
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L Y +++W+ ++RKLM N++K S I
Sbjct: 554 LSSSTYAGSDRWDDVIKIRKLMEVTNLQKPCAYSSI 589
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/353 (26%), Positives = 170/353 (48%), Gaps = 16/353 (4%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ ++ M+ + + + + + KSC +++ + H +KLGF S+++V+ +L+H
Sbjct: 98 IHFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVHSMKLGFESYLFVSNALIHM 157
Query: 61 YVV-TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
YV A+K+FD + ER+ V+WN++I GY + + D F M NV + S +
Sbjct: 158 YVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTM 217
Query: 120 AAYLNAGAYDPGLKL---FREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL--MGKSAHG 174
++A + ++ + I G+ D + +G L G G++ G+ +
Sbjct: 218 MKAISATCFLSEWEMGDYLVKYIDEHGVVVD-LYLGNTL--IDMYGRRGMIDFAGRVFYQ 274
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
KN N I YAK G L A +F M R+VISWT++I G + +
Sbjct: 275 MKEKNIVSWNAMIMG-----YAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAE 329
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
A+ LF+ M + VKP+E+T L+AC H G +D G I ++D++ + ++
Sbjct: 330 AVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYI-RKHDIKSDVFVGNSLI 388
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALR 347
D++ K G +E+A +V M+ +V W S ++ + + A V Q L+
Sbjct: 389 DMYCKCGVVEKALQVFNDMKTRDSV-SWTSIISGLAVNGFAESALNVFDQMLK 440
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/305 (21%), Positives = 126/305 (41%), Gaps = 38/305 (12%)
Query: 24 KSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT--SFGFARKLFDELPERNA 81
++ ++ +L I LH+ +++ + ++ Y ++ S A +F+++
Sbjct: 19 RAISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSPQSLPKAHFVFNQIQRPTL 78
Query: 82 VTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISN 141
+ WN MI G SKS +A F+ M +
Sbjct: 79 LVWNHMIHGLSKSDRPNDAIHFYNTMYYK------------------------------- 107
Query: 142 EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFL 201
G+ +T + C+ + V G+ +K +E ++ L+ MY G L
Sbjct: 108 -GIQGSHLTFIFLFKSCARVSDVR--QGQMVRVHSMKLGFESYLFVSNALIHMYVCFGEL 164
Query: 202 KYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261
A VF+ M ER+V+SW ++ICG + L LF MQA V+ + +T ++A
Sbjct: 165 AMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISAT 224
Query: 262 VHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVII 321
+ G K ID E+ + + ++D++G+ G ++ A V M+ E N++
Sbjct: 225 CFLSEWEMGDYLVKYID-EHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMK-EKNIVS 282
Query: 322 WGSFL 326
W + +
Sbjct: 283 WNAMI 287
>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 629
Score = 280 bits (716), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 153/457 (33%), Positives = 243/457 (53%), Gaps = 66/457 (14%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+FS+M R + +D+F+ +LK+C+ + L V+ +H+HI KLG S +YV +L+ Y
Sbjct: 104 VFSEMQRFGLFADNFTYPFLLKACSGLSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYS 163
Query: 63 ----------------------------------VTSFGFARKLFDELPERNAVTWNTMI 88
ARKLFDE+P+R+ ++WNTM+
Sbjct: 164 RCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARKLFDEMPQRDLISWNTML 223
Query: 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM---------- 138
GY++ + A + FE+MP RN SWS M+ Y AG + +F +M
Sbjct: 224 DGYARCREMSRAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPFPAKNVVTW 283
Query: 139 ------ISNEGL--TPDQMTIGAVLSGC-----------SHLGSVGLL-MGKSAHGFIVK 178
+ +GL D++ V SG + GLL +G AH I K
Sbjct: 284 TIIIAGYAEKGLLKEADKLVDQMVASGLRFDAAAAISILAACAESGLLSLGMRAHSIIKK 343
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ N + L+DMYAKCG LK A VF M +++++SW ++ G G+ ++A+ L
Sbjct: 344 SNLNSNASVLNALLDMYAKCGSLKKAFDVFNDMPKKDLVSWNTMLHGLGVHGHGKEAIEL 403
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F M+ G+ P+++TF VL +C H GL+DEG YF +++ YDL P+++HYGC+VDL G
Sbjct: 404 FSRMRKEGIWPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPKVEHYGCLVDLLG 463
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+ G L+EA +V++TM +EPNV+IWG+ L AC+ H + D+A+ V+ +++ +D G +
Sbjct: 464 RGGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKL--DPSDPGNY 521
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
TL+ ++Y E WEG +R M + V K G+S +
Sbjct: 522 TLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSV 558
>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Vitis vinifera]
Length = 536
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 154/427 (36%), Positives = 232/427 (54%), Gaps = 37/427 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F QM SV D ++ LKSC F+ + +H H+LK G +++ +L+H
Sbjct: 93 LTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHL 152
Query: 61 YV-------------------VTSFG-------------FARKLFDELPERNAVTWNTMI 88
Y V S+ A LFDE+ ERN +WN MI
Sbjct: 153 YASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLFDEMTERNVESWNFMI 212
Query: 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ 148
GY G + EAR F P++NV SW+AMI Y +AG + L LF +M + G+ PD
Sbjct: 213 SGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDM-QHAGVKPDN 271
Query: 149 MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVF 208
T+ +VLS C+H+G+ L G+ H +I KN ++ +AT LVDMY+KCG ++ AL VF
Sbjct: 272 CTLVSVLSACAHVGA--LSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVF 329
Query: 209 ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
+++ +W ++I G + G + AL +F M G KPNE+TF VL+AC GL+D
Sbjct: 330 NSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLD 389
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
EGR+ F ++ + ++P I+HYGCMVDL G+ G LEEA E+++ M + ++W S L A
Sbjct: 390 EGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGA 449
Query: 329 CKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRK 388
C+ H ++AERV ++ L + E+ F + ++Y +W+ VR+ M Q VRK
Sbjct: 450 CRNHGNVELAERVAQKLLELSPQESSS--FVQLSNMYASMGRWKDVMEVRQKMRAQGVRK 507
Query: 389 ARGSSVI 395
G S+I
Sbjct: 508 DPGCSMI 514
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 98/394 (24%), Positives = 164/394 (41%), Gaps = 53/394 (13%)
Query: 14 SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLF 73
S SF IL +++ +H H+HILK G I + A+ L+ S A
Sbjct: 2 SSSFPPPPILSFAEMATSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQA---- 57
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
+ A F R+P N W+ +I AY N+ + L
Sbjct: 58 -----------------------IPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALT 94
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
+F +M+ + + PD+ T L C G+ G+ HG ++K + I L+
Sbjct: 95 IFHQML-HASVLPDKYTFTFALKSCGSFS--GVEEGRQIHGHVLKTGLGDDLFIQNTLIH 151
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
+YA CG ++ A + + M ER+V+SW AL+ A RG E A LF+ M V+ +
Sbjct: 152 LYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLFDEMTERNVE----S 207
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
+ +++ V GL++E R+ F + + + M+ + AG E + M
Sbjct: 208 WNFMISGYVGVGLLEEARRVFGETPVK-----NVVSWNAMITGYSHAGRFSEVLVLFEDM 262
Query: 314 R---LEPNVIIWGSFLAACKEHKQFDMAERV----IKQALRMVKPENDGGVFTLICDLYT 366
+ ++P+ S L+AC E V K + + DG V T + D+Y+
Sbjct: 263 QHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISI-----DGFVATALVDMYS 317
Query: 367 MNEKWEGAERVRKLMLNQNVRKARGSSVISSLSV 400
E A V L +++ + +S+IS LS
Sbjct: 318 KCGSIEKALEVFNSCLRKDI--STWNSIISGLST 349
>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 144/394 (36%), Positives = 237/394 (60%), Gaps = 6/394 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
++QM + + D+ + ++K+ T + V HS I++ GF + VYV SL+H Y
Sbjct: 106 FYTQMLKSRIWPDNITFPFLIKASTEMECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYA 165
Query: 63 VTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
A ++F ++P R+ V+W +M+ GY K G V +AR+ F+ MP RN+ +WS MI
Sbjct: 166 NCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMING 225
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y ++ + LF E++ EG+ ++ + +V+S C+HLG+ L G+ AH ++VK+
Sbjct: 226 YAKNNCFEKAIDLF-ELMKREGVVANETVMVSVISSCAHLGA--LEFGERAHEYVVKSHM 282
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+N + T LVDMY +CG ++ A+ VFE + +++ +SW+++I G A G++ A+ F
Sbjct: 283 TVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQ 342
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M G P ++T T VL+AC H GLVD+G + ++ + +Y +EPR++HYGC+VD+ G+AG
Sbjct: 343 MVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPRLEHYGCIVDMLGRAG 402
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L EA I M ++PN I G+ L ACK +K ++AERV L VKPE+ G + L+
Sbjct: 403 KLAEAENFILKMPVKPNAPILGALLGACKIYKNTEVAERV-GNMLIEVKPEHS-GYYVLL 460
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y +WE E +R +M + V+K G S+I
Sbjct: 461 SNIYACAGQWEKLESLRDIMKEKLVKKPPGWSLI 494
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 78/346 (22%), Positives = 155/346 (44%), Gaps = 32/346 (9%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS----------FGFA 69
L +L+SC+ F++L +I H +L+ IS V+VA+ LL + G+A
Sbjct: 16 LALLQSCSSFSDLKII---HGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYA 72
Query: 70 RKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNV----ASWSAMIAAYLNA 125
+F ++ N +N +I+ +S +A F+ +M + ++ +I A
Sbjct: 73 YGIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEM 132
Query: 126 GAYDPGLKLFREMISNEGLTPD---QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
G + +++ G D + ++ + + C + + G + G+ +V W
Sbjct: 133 ECVVVGEQTHSQIV-RFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVV--SW- 188
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
T +V Y KCG ++ A +F+ M RN+ +W+ +I G A E A+ LFE+M
Sbjct: 189 ------TSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELM 242
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
+ GV NE V+++C H G ++ G + + + + + + + +VD++ + G
Sbjct: 243 KREGVVANETVMVSVISSCAHLGALEFGERAHEYVVKSH-MTVNLILGTALVDMYWRCGE 301
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348
+E+A V + + + + W S + H A Q +R+
Sbjct: 302 IEKAIRVFEELP-DKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRL 346
>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
gi|219886289|gb|ACL53519.1| unknown [Zea mays]
Length = 537
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 150/441 (34%), Positives = 247/441 (56%), Gaps = 48/441 (10%)
Query: 1 MQLFSQMHRQSVPSDSFSILH-------ILKSCTHFNNLTVIHHLHSHILKLGFISHVYV 53
+ ++++M R S D ++ +L++C +H+H++K G S +V
Sbjct: 93 VSIYARMARHSADCDLMTLRPDKRTFPFVLRACAAMGAGETGAQVHAHVVKAGCESDAFV 152
Query: 54 ATSLLHEY--------------------------VVTSF------GFARKLFDELPERNA 81
+L+ + +++ F G AR+LFDE P ++
Sbjct: 153 RNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAARELFDESPVKDL 212
Query: 82 VTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISN 141
V+WN MI Y+K G++ AR+ F+ P R+V SW+AMI+ Y+ G+ ++LF +M +
Sbjct: 213 VSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQAM 272
Query: 142 EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA--TILVDMYAKCG 199
G PD +T+ ++LS C+ G L G+ HGF+ + A L+DMYAKCG
Sbjct: 273 -GEKPDTVTMLSLLSACADSGD--LDAGRRLHGFLSGRFSRIGPTTALGNALIDMYAKCG 329
Query: 200 FLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLT 259
+ AL VF LM+++NV +W ++I G A G++ +++++F M VKP+E+TF VL
Sbjct: 330 SMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNVKPDEITFVAVLA 389
Query: 260 ACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNV 319
AC H G+VD+G +YF ++ + Y +EP I+HYGCMVD+ + G L+EA+E I TM++EPN
Sbjct: 390 ACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGCMVDMLSRGGLLKEAFEFIGTMKIEPNP 449
Query: 320 IIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG-GVFTLICDLYTMNEKWEGAERVR 378
+IW + L AC+ H + ++AE ++ ++K +D G F L+ ++Y +W G+E +R
Sbjct: 450 VIWRTLLGACRIHGEIELAEHANRE---LLKARSDASGDFVLLSNIYASVGEWPGSENMR 506
Query: 379 KLMLNQNVRKARGSSVISSLS 399
KLM + V K G +VI S S
Sbjct: 507 KLMDDSGVNKEAGRAVIDSSS 527
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 89/364 (24%), Positives = 160/364 (43%), Gaps = 45/364 (12%)
Query: 31 NLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDELPERNAVTWNTM 87
+L I +H+ ++ GF+S L+ V G AR +FD +P + +NT+
Sbjct: 20 SLRQIKQVHALMVLQGFLSDSSALRELIFASAVGVRGGTAHARLVFDRIPHPDRFMYNTL 79
Query: 88 IKGYSKSGNVCEARDFFERMPLRNVASWSAM------------IAAYLNAGAYDPGLKLF 135
I+G + S +A + RM R+ A M + A GA + G ++
Sbjct: 80 IRGAAHSDAPRDAVSIYARMA-RHSADCDLMTLRPDKRTFPFVLRACAAMGAGETGAQVH 138
Query: 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVG-------------------LLMGKSAHGFI 176
++ G D A++ + LG +G ++ G + G I
Sbjct: 139 AHVV-KAGCESDAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGFARRGDI 197
Query: 177 -----VKNEWELNEQIA-TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRG 230
+ +E + + ++ +++ YAK G + A +F+ +R+V+SW A+I G G
Sbjct: 198 GAARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCG 257
Query: 231 YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD-LEPRIQH 289
+ A+ LFE MQA G KP+ +T +L+AC +G +D GR+ + + + P
Sbjct: 258 SRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTTAL 317
Query: 290 YGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALR-M 348
++D++ K G + A EV M+ + NV W S + H + V ++ L+
Sbjct: 318 GNALIDMYAKCGSMTSALEVFWLMQ-DKNVSTWNSIIGGLALHGHATESIAVFRKMLQGN 376
Query: 349 VKPE 352
VKP+
Sbjct: 377 VKPD 380
>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
Length = 537
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 150/441 (34%), Positives = 247/441 (56%), Gaps = 48/441 (10%)
Query: 1 MQLFSQMHRQSVPSDSFSILH-------ILKSCTHFNNLTVIHHLHSHILKLGFISHVYV 53
+ ++++M R S D ++ +L++C +H+H++K G S +V
Sbjct: 93 VSIYARMARHSADCDLMTLRPDKRTFPFVLRACAAMGAGETGAQVHAHVVKAGCESDAFV 152
Query: 54 ATSLLHEY--------------------------VVTSF------GFARKLFDELPERNA 81
+L+ + +++ F G AR+LFDE P ++
Sbjct: 153 RNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAARELFDESPVKDL 212
Query: 82 VTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISN 141
V+WN MI Y+K G++ AR+ F+ P R+V SW+AMI+ Y+ G+ ++LF +M +
Sbjct: 213 VSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQAM 272
Query: 142 EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA--TILVDMYAKCG 199
G PD +T+ ++LS C+ G L G+ HGF+ + A L+DMYAKCG
Sbjct: 273 -GEKPDTVTMLSLLSACADSGD--LDAGRRLHGFLSGRFSRIGPTTALGNALIDMYAKCG 329
Query: 200 FLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLT 259
+ AL VF LM+++NV +W ++I G A G++ +++++F M VKP+E+TF VL
Sbjct: 330 SMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNVKPDEITFVAVLA 389
Query: 260 ACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNV 319
AC H G+VD+G +YF ++ + Y +EP I+HYGCMVD+ + G L+EA+E I TM++EPN
Sbjct: 390 ACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGCMVDMLSRGGLLKEAFEFIGTMKIEPNP 449
Query: 320 IIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG-GVFTLICDLYTMNEKWEGAERVR 378
+IW + L AC+ H + ++AE ++ ++K +D G F L+ ++Y +W G+E +R
Sbjct: 450 VIWRTLLGACRIHGEIELAEHANRE---LLKARSDASGDFVLLSNIYASVGEWPGSENMR 506
Query: 379 KLMLNQNVRKARGSSVISSLS 399
KLM + V K G +VI S S
Sbjct: 507 KLMDDSGVNKEAGRAVIDSSS 527
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 88/363 (24%), Positives = 162/363 (44%), Gaps = 43/363 (11%)
Query: 31 NLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDELPERNAVTWNTM 87
+L I +H+ ++ GF+S L+ V G AR +FD +P + +NT+
Sbjct: 20 SLRQIKQVHALMVLQGFLSDSSALRELIFASAVGVRGGTAHARLVFDRIPHPDRFMYNTL 79
Query: 88 IKGYSKSGNVCEARDFFERMP----------LR-NVASWSAMIAAYLNAGAYDPGLKLFR 136
I+G + S +A + RM LR + ++ ++ A GA + G ++
Sbjct: 80 IRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACAAMGAGETGAQVHA 139
Query: 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVG-------------------LLMGKSAHGFI- 176
++ G D A++ + LG +G ++ G + G I
Sbjct: 140 HVV-KAGCESDAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIG 198
Query: 177 ----VKNEWELNEQIA-TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGY 231
+ +E + + ++ +++ YAK G + A +F+ +R+V+SW A+I G G
Sbjct: 199 AARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGS 258
Query: 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD-LEPRIQHY 290
+ A+ LFE MQA G KP+ +T +L+AC +G +D GR+ + + + P
Sbjct: 259 RKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTTALG 318
Query: 291 GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALR-MV 349
++D++ K G + A EV M+ + NV W S + H + V ++ L+ V
Sbjct: 319 NALIDMYAKCGSMTSALEVFWLMQ-DKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNV 377
Query: 350 KPE 352
KP+
Sbjct: 378 KPD 380
>gi|242054685|ref|XP_002456488.1| hypothetical protein SORBIDRAFT_03g037190 [Sorghum bicolor]
gi|241928463|gb|EES01608.1| hypothetical protein SORBIDRAFT_03g037190 [Sorghum bicolor]
Length = 589
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 142/368 (38%), Positives = 226/368 (61%), Gaps = 3/368 (0%)
Query: 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPER--N 80
LK + +++ ++ H H H+L+ +++ +VA+SLL Y + S A +LFD++P N
Sbjct: 53 LKPLSAASSIPLLTHFHGHLLRSNLLAYPHVASSLLRSYSLLSPSAAHQLFDQIPSTACN 112
Query: 81 AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMIS 140
N M+ +S ++ AR FF+ +P ++V SWS M+A Y + G GL FR M
Sbjct: 113 LYVLNVMLASLCRSSDLDSARTFFDGIPDKDVVSWSTMLACYFSNGHLADGLAFFRTMTF 172
Query: 141 NEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGF 200
+ D + L+ C+ G + L + HG+ V++ + + T L+D Y K
Sbjct: 173 TTDIAVDCAMLATFLTSCASAGFLPLFC-RDIHGYAVRHSIPASMHLGTALIDCYTKTNN 231
Query: 201 LKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260
+ YA VF M +RNV+ WT +ICG + + + +A+ LFE M V+PNEMTFT VL+A
Sbjct: 232 IDYATRVFARMTKRNVVHWTIMICGMSSQLRNTEAVRLFEEMCQRRVQPNEMTFTAVLSA 291
Query: 261 CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVI 320
CV+ G+V++GR+ FK++ + Y LEP I HYGC+VDL+ KAG LE+AYEVI+TM++EPNVI
Sbjct: 292 CVNAGMVEKGRELFKLMVDRYRLEPNIHHYGCIVDLYAKAGLLEDAYEVIKTMKVEPNVI 351
Query: 321 IWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKL 380
IW S L ACK+ K F++A + +++ L + + + G++TLI DLY M +W+ ++ +L
Sbjct: 352 IWTSLLVACKKFKNFEIAVKGMEKVLALEISDENAGLYTLISDLYAMGGQWDDVLKIMRL 411
Query: 381 MLNQNVRK 388
+ ++V K
Sbjct: 412 VEKRDVWK 419
>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
Length = 643
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 137/334 (41%), Positives = 207/334 (61%), Gaps = 5/334 (1%)
Query: 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+V A++LFDE+PERN V+WN+M+ G+ K GNV EA F MP R+V SW++M+A
Sbjct: 109 IVGKIDEAKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLAC 168
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y G + L LF +M + G+ P + T+ ++LS C+HLG+ L G H +I N
Sbjct: 169 YAQCGKPNEALALFDQMRA-VGVKPTEATVVSLLSACAHLGA--LDKGLHLHTYINDNRI 225
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
E+N + T LVDMYAKCG + A VF ME ++V++W +I G A G+ ++A LF+
Sbjct: 226 EVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKE 285
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M+ V+PN++TF +L+AC H G+VDEG+K + Y +EP+++HY C++DL +AG
Sbjct: 286 MKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAG 345
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
LEEA E+I TM +EPN G+ L C+ H F++ E V K+ + + +P + G + L+
Sbjct: 346 LLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINL-QPCH-SGRYILL 403
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y +KW+ A +VR LM + K G SVI
Sbjct: 404 SNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVI 437
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 5/151 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF QM V +++ +L +C H L HLH++I + V T+L+
Sbjct: 179 LALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDM 238
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA----SW 115
Y A ++F+ + ++ + WNT+I G + G+V EA+ F+ M +V ++
Sbjct: 239 YAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITF 298
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
AM++A +AG D G KL M S+ G+ P
Sbjct: 299 VAMLSACSHAGMVDEGQKLLDCMSSSYGIEP 329
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 16/181 (8%)
Query: 149 MTIGAVLSGC--SHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
MT V+ C S + GLL+ H +VK+ +E + I L+ +YA L A
Sbjct: 1 MTYPFVIKACNESSVTWFGLLV----HTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQ 56
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
+F L +R+V+SW A+I G RG +F+ M V +++ ++ G
Sbjct: 57 LFSLCSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDV----ISWNTIINGYAIVGK 112
Query: 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
+DE ++ F + E + + M+ F K G +EEA+ + M +V+ W S L
Sbjct: 113 IDEAKRLFDEMPER-----NLVSWNSMLSGFVKCGNVEEAFGLFSEMPCR-DVVSWNSML 166
Query: 327 A 327
A
Sbjct: 167 A 167
>gi|359491803|ref|XP_002269228.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 550
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 143/420 (34%), Positives = 237/420 (56%), Gaps = 38/420 (9%)
Query: 7 MHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY----- 61
+H P D+F+ ++KS + + H LH+H++K G V+V +++ Y
Sbjct: 101 LHAGHFP-DNFTFPFLIKSSSASPTSLLGHQLHAHVVKFGLDRDVFVVNNMIALYSSFRE 159
Query: 62 ----------------------VVTSFGF------ARKLFDELPERNAVTWNTMIKGYSK 93
++T F ARK+FD +P +N V+WN MI GY+
Sbjct: 160 LRSARKVFDESYSLVDVVSWTTLITGFSNSGQIDEARKIFDLMPLKNTVSWNAMISGYAG 219
Query: 94 SGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGA 153
S + EAR F+ MP R+ ASWSAM++ Y G + L LF EM++ + + P++ + +
Sbjct: 220 SSRINEARKLFDEMPDRDAASWSAMVSGYSQLGMCNEALDLFMEMVTGDKMIPNEAALVS 279
Query: 154 VLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE 213
+S C+ L + L G+ H +I + + +N + T+L+DMY KCG + A VF LM E
Sbjct: 280 AVSACAQLRA--LEEGRWLHSYIKEKKLRINVTLGTVLLDMYGKCGSILDAAGVFNLMSE 337
Query: 214 RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKY 273
RNV SW ++I G A G ++AL+LF MQ G PN +TF +LT C H+GL+ EGR
Sbjct: 338 RNVNSWNSMIAGLALNGCGKEALALFWKMQFVGPSPNAITFIALLTGCSHSGLITEGRWL 397
Query: 274 FKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHK 333
F M+ + Y ++P+++HYGCMVDL G+AG ++EA + + M ++P+ +WG+ + AC+ H
Sbjct: 398 FSMMTQVYGIKPQLKHYGCMVDLLGRAGLVKEALDFVEKMPMKPHSELWGALVGACRIHG 457
Query: 334 QFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
Q ++ E + K+ + + +P + GG + L+C+++ ++W+ VR L + V K G++
Sbjct: 458 QVELGEELGKRLIDL-EPHH-GGRYALLCNIFAAAQRWDDVAMVRDLEKGRKVLKNPGNN 515
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 86/364 (23%), Positives = 152/364 (41%), Gaps = 55/364 (15%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH-- 59
++ Q+H S+ L L + +H +H H+H++ G SH + T LL
Sbjct: 4 RIIEQLHHPSLSQ----ALTALTATSH------LHQAHAHLIVSGLASHPFTVTRLLACA 53
Query: 60 --EYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGN-----VC--EARDF-----FE 105
+ A+ +F + +NT+I S++ + VC A F F
Sbjct: 54 ALSPSASDLPHAKTIFLHTHNPSPFMFNTIIMASSRTLDSVTFYVCMLHAGHFPDNFTFP 113
Query: 106 RMPLRNVASWSAMIAAYLNAGAYDPGLKL--------------FREMISNEGLTPDQMTI 151
+ + AS ++++ L+A GL FRE+ S + + ++
Sbjct: 114 FLIKSSSASPTSLLGHQLHAHVVKFGLDRDVFVVNNMIALYSSFRELRSARKVFDESYSL 173
Query: 152 GAVLSGCSHLGSVGLLMGKSAHGFI--VKNEWELNEQIATI----LVDMYAKCGFLKYAL 205
V+S + L+ G S G I + ++L T+ ++ YA + A
Sbjct: 174 VDVVSWTT------LITGFSNSGQIDEARKIFDLMPLKNTVSWNAMISGYAGSSRINEAR 227
Query: 206 MVFELMEERNVISWTALICGSAHRGYSEDALSLF-EMMQATGVKPNEMTFTGVLTACVHT 264
+F+ M +R+ SW+A++ G + G +AL LF EM+ + PNE ++AC
Sbjct: 228 KLFDEMPDRDAASWSAMVSGYSQLGMCNEALDLFMEMVTGDKMIPNEAALVSAVSACAQL 287
Query: 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324
++EGR I E+ L + ++D++GK G + +A V M E NV W S
Sbjct: 288 RALEEGRWLHSYIKEK-KLRINVTLGTVLLDMYGKCGSILDAAGVFNLMS-ERNVNSWNS 345
Query: 325 FLAA 328
+A
Sbjct: 346 MIAG 349
>gi|413924390|gb|AFW64322.1| hypothetical protein ZEAMMB73_176484 [Zea mays]
Length = 496
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 147/388 (37%), Positives = 233/388 (60%), Gaps = 12/388 (3%)
Query: 13 PSDSFSILHILKSCTHFNNLTVIHHL----HSHILKLGFISHVYVATSLLHEYVVTSFG- 67
P+D ++L +L +C + + L H+ LKL F SH+ ++T L Y+ +
Sbjct: 67 PND-VTLLTVLSACADSPSSPLASPLALTLHARALKL-FPSHLLLSTCLARFYLASRLPH 124
Query: 68 FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
A +LFD +P R+ VT+NTMI G ++G V A + F+ MP + SW+A+I ++ G
Sbjct: 125 LALQLFDSMPVRSVVTYNTMISGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGR 184
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
+D + FR M+ +G+ D +T+ AV+S C+ +G++GL G H +++ E N ++
Sbjct: 185 HDEAIDCFRAMLL-DGVETDYITLVAVVSACAEVGALGL--GMWVHRLVLRQRLERNVRV 241
Query: 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
A L+DMYA+CG + A VF + +R V+SW ++I G A G DA+ LFE M+ G
Sbjct: 242 ANSLIDMYARCGQVNLAAQVFRSIRKRTVVSWNSMIVGFAANGRCTDAIELFEEMRRQGF 301
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
KP+ +T TGVLTAC H GL + G +Y+ ++ EY + R++HYGC+VDL G+AG L+EA
Sbjct: 302 KPDAVTLTGVLTACSHAGLTEHGLRYYDLMTTEYGVAARMEHYGCVVDLLGRAGRLDEAM 361
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM 367
V+ TM + PN ++ G+ LA C+ H DMAE+++ Q L + P+ D + L+ ++Y
Sbjct: 362 HVVETMPMRPNEVVLGALLAGCRTHGNLDMAEQMM-QHLFELDPQGDAN-YVLLSNIYAA 419
Query: 368 NEKWEGAERVRKLMLNQNVRKARGSSVI 395
KW+GA +VR LM + V+K G S +
Sbjct: 420 VGKWDGAGKVRSLMKARGVKKRPGHSTV 447
>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 145/456 (31%), Positives = 234/456 (51%), Gaps = 68/456 (14%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV- 62
F M + + +D+F+ +LK+C L + +H H+ K GF ++V SL+ Y
Sbjct: 109 FFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSK 168
Query: 63 ---------------------------------VTSFGFARKLFDELPERNAVTWNTMIK 89
G ARKLFDE+ ER+AV+WNT++
Sbjct: 169 CGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEMAERDAVSWNTILD 228
Query: 90 GYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM----------- 138
GY K+G + +A + FE+MP RNV SWS M++ Y G + LF +M
Sbjct: 229 GYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTII 288
Query: 139 -------------------ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ GL PD T+ ++L+ C+ G L++GK H I K
Sbjct: 289 ISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGL--LVLGKKVHASIKKI 346
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + ++ LVDMYAKCG + AL +F M R+++SW ++ G A G+ E A+ LF
Sbjct: 347 RIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLF 406
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MQ G KP+++T +L AC H G VD+G YF ++ ++ + P I+HYGCM+DL G+
Sbjct: 407 SKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPHIEHYGCMIDLLGR 466
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
G LEEA+ ++++M +EPN +IWG+ L AC+ H +AE+V+ + + + ++D G ++
Sbjct: 467 GGRLEEAFRLVQSMPMEPNDVIWGTLLGACRVHNAVPLAEKVLDRLITL--EQSDPGNYS 524
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++ +++ W +R M + V+K G+S I
Sbjct: 525 MLSNIFAAAGDWNSVANMRLQMKSTGVQKPSGASSI 560
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/377 (22%), Positives = 164/377 (43%), Gaps = 71/377 (18%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT-SFGFARKLFDELPE 78
L L CT FN+ I +H+ I+K + +YVA L+ + + A +F+++ +
Sbjct: 27 LQDLHKCTDFNH---IKEVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQD 83
Query: 79 RNAVTWNTMIKGYSKSGNVCEARDFFERMPLR----------------NVASW------- 115
N +NT+I+ + ++ +A F M N W
Sbjct: 84 PNVHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMI 143
Query: 116 ----------------SAMIAAYLNAG--AYDPGLKLFREMISNEGLTPDQMTIGAVLSG 157
+++I +Y G + +KLF EM + ++ + M G V +G
Sbjct: 144 HCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAG 203
Query: 158 CSHLGSVGLLMGKSAH-----------GFIVKNE----WELNEQIA-------TILVDMY 195
LG L + A G++ E + L E++ + +V Y
Sbjct: 204 --DLGRARKLFDEMAERDAVSWNTILDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGY 261
Query: 196 AKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT 255
K G ++ A M+F+ M +N+++WT +I G A +G +++A +L+ M+A G+KP++ T
Sbjct: 262 CKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLI 321
Query: 256 GVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRL 315
+L AC +GL+ G+K I ++ ++ + +VD++ K G +++A + M +
Sbjct: 322 SILAACAESGLLVLGKKVHASI-KKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSM 380
Query: 316 EPNVIIWGSFLAACKEH 332
+++ W L H
Sbjct: 381 R-DLVSWNCMLQGLAMH 396
>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
Length = 894
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 141/400 (35%), Positives = 236/400 (59%), Gaps = 6/400 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF M + V +D +++ ++ +CTH + ++ + +I + VY+ +L+
Sbjct: 496 LALFELMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDVYLGNTLIDY 555
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + A K+F ++ ++N VT N MI Y+K GN+ A+ F+++P +++ SWS+MI
Sbjct: 556 YCRIGQLQSAEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMI 615
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
AY A + L+LFR+M + PD + I +VLS C+HLG++ L GK H ++ +N
Sbjct: 616 CAYSQASHFSDSLELFRQM-QRAKVKPDAVVIASVLSACAHLGALDL--GKWIHDYVRRN 672
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + + L+DM+AKCG ++ AL VF MEE++ +SW ++I G A+ G+ ++AL++F
Sbjct: 673 NIKTDTIMENSLIDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILGLANNGFEDEALNIF 732
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M G +PNE+TF GVL AC + LV EG +F+ + ++LEP+++HYGC+V + +
Sbjct: 733 YSMLTEGPRPNEVTFLGVLIACANKRLVQEGLDHFERMKTVHNLEPQMKHYGCVVGILSR 792
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG LE+A I M L P+ ++W L ACK H +AE K+ L + P N G +
Sbjct: 793 AGQLEKAKNFINEMPLAPDPVVWRILLGACKTHGNVAVAEVATKK-LSELDPSNSGD-YM 850
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLS 399
L+ ++Y ++W A VR+ M + VRK+ SV+ S S
Sbjct: 851 LLSNIYASADRWSDALNVRQWMADTAVRKSPACSVVDSAS 890
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 119/325 (36%), Positives = 203/325 (62%), Gaps = 6/325 (1%)
Query: 76 LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF 135
+P +N V+WN +I G++ G + AR F++MP RNV SW+ +I Y A Y + LF
Sbjct: 1 MPMKNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALF 60
Query: 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY 195
R M++ G++P ++T+ AV+ S+LG G+LMG+ HG+ VK + ++ L+D+Y
Sbjct: 61 RHMMAG-GISPSEITVLAVVPAISNLG--GILMGEMLHGYCVKKGIMSDARVGNSLIDLY 117
Query: 196 AKCGFLKYALMVF-ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTF 254
AK G ++ +L VF E+++ RN++SWT++I G A G S +AL LF M+ G++PN +TF
Sbjct: 118 AKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITF 177
Query: 255 TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR 314
V+ AC H GLV++G +FK + EY+++P I+H+GC++D+ G+AG L EA ++I +
Sbjct: 178 LSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLP 237
Query: 315 LEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGA 374
+E NVI+W L C ++ + +M +R IK + + GG F ++ ++ ++ A
Sbjct: 238 VEVNVIVWRILLGCCSKYGEVEMGKRAIKMISDLER--ESGGDFAVLSNVLNELGRFSDA 295
Query: 375 ERVRKLMLNQNVRKARGSSVISSLS 399
E+ RKL+ + + K G +++ + S
Sbjct: 296 EQARKLLDERKIVKVPGLALVVTRS 320
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 91/356 (25%), Positives = 161/356 (45%), Gaps = 68/356 (19%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+ + + + D+ + +LK+C +HSH++KLGF+ ++V+ SL+H Y
Sbjct: 397 FYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVIKLGFLLDIFVSNSLIHLYA 456
Query: 63 VT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
AR +FDE+ ++ V+WN++I GYS+ R+ F+ +
Sbjct: 457 ACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQ-------RNRFKEV-------------- 495
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
L LF E++ E + D++T+ V+S C+HLG M +I +N
Sbjct: 496 ----------LALF-ELMQAEEVQADKVTMVKVISACTHLGDWS--MADCMVRYIERNHI 542
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERN-------------------------- 215
E++ + L+D Y + G L+ A VF M+++N
Sbjct: 543 EVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQ 602
Query: 216 -----VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
+ISW+++IC + + D+L LF MQ VKP+ + VL+AC H G +D G
Sbjct: 603 IPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLG 662
Query: 271 RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
K+ +++ ++D+F K G ++EA +V M E + + W S +
Sbjct: 663 -KWIHDYVRRNNIKTDTIMENSLIDMFAKCGCMQEALQVFTEME-EKDTLSWNSII 716
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/321 (23%), Positives = 147/321 (45%), Gaps = 44/321 (13%)
Query: 29 FNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV--TSFGFARKLFDELPERNAVTWNT 86
F + + LH+H++ G + Y + ++ Y + + FA K+F+++ WNT
Sbjct: 321 FVMMEAVKKLHAHLVVSGLHNCQYAMSKVIRSYALQQSDLVFAHKVFEQIESPTTFLWNT 380
Query: 87 MIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
+++G ++S +A F+++ +G+ P
Sbjct: 381 LLRGLAQSDAPKDAIVFYKKA--------------------------------QEKGMKP 408
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
D MT VL C+ + G+ H ++K + L+ ++ L+ +YA CG L A
Sbjct: 409 DNMTFPFVLKACAK--TYAPKEGEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARS 466
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG- 265
+F+ M ++V+SW +LI G + R ++ L+LFE+MQA V+ +++T V++AC H G
Sbjct: 467 IFDEMLVKDVVSWNSLIGGYSQRNRFKEVLALFELMQAEEVQADKVTMVKVISACTHLGD 526
Query: 266 --LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWG 323
+ D +Y E +E + ++D + + G L+ A +V M+ + N +
Sbjct: 527 WSMADCMVRYI----ERNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMK-DKNTVTLN 581
Query: 324 SFLAACKEHKQFDMAERVIKQ 344
+ + A + A+++ Q
Sbjct: 582 AMIHAYAKGGNLVSAKKIFDQ 602
>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 146/361 (40%), Positives = 221/361 (61%), Gaps = 14/361 (3%)
Query: 39 HSHILKLGFISHVYVATSLLHEY---VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSG 95
H +K G SH YVA ++L Y VV A KLFDE+P ++ VT +TMI Y +S
Sbjct: 1 HCQAVKPGIFSHGYVANNILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAYFES- 59
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155
A FE MP +++ +W+++I + G + L L++ M +EG+ PD T+ ++L
Sbjct: 60 ----AYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRM-GSEGVEPDGFTMVSLL 114
Query: 156 SGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME-ER 214
S C+ L + L++G+ AH ++VK N L+D+YAKCG + A +F+ M ER
Sbjct: 115 SACAELAT--LVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIER 172
Query: 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF 274
NV+SWT+LI G A G+ ++AL F+ M+ G+ P+E+TF GVL AC H G+V+EG +YF
Sbjct: 173 NVVSWTSLIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYF 232
Query: 275 KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
K + E+YD+ PRI+HYGCMVDL G+AG L+EAY+ I+ M L+PN +IW + L AC H
Sbjct: 233 KRMKEQYDIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGH 292
Query: 335 FDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSV 394
+ + L ++P+ D G + L+ +LY ++W VR+ ML++ VRK G S+
Sbjct: 293 LGLGA-FARARLLQLEPK-DSGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSL 350
Query: 395 I 395
+
Sbjct: 351 V 351
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 103/240 (42%), Gaps = 48/240 (20%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+ +M + V D F+++ +L +C L + H +++K+G +++ +LL
Sbjct: 92 LTLYKRMGSEGVEPDGFTMVSLLSACAELATLVLGRRAHVYMVKVGLNKNLHANNALLDL 151
Query: 61 YV-VTSFGFARKLFDELP-ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y + ARK+FDE+ ERN V+W ++I G + +G EA + F+ M
Sbjct: 152 YAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAVNGFGKEALEHFKDM----------- 200
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF--- 175
EGL P ++T VL CSH G V GF
Sbjct: 201 ---------------------EREGLVPSEITFVGVLYACSHCGIVN-------EGFEYF 232
Query: 176 -IVKNEWELNEQIA--TILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGY 231
+K ++++ +I +VD+ + G LK A + M + N + W L+ G+
Sbjct: 233 KRMKEQYDIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGH 292
>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 154/396 (38%), Positives = 236/396 (59%), Gaps = 11/396 (2%)
Query: 3 LFSQ-MHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
LF Q M Q + D F+ + KSC L LH H KLGF S Y+ +L++ Y
Sbjct: 64 LFYQLMMLQGLDPDRFTFPSLFKSC---GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMY 120
Query: 62 V-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL-RNVASWSAMI 119
ARK+FD++ ++ V+W TMI Y++ EA F RM + N+ W+ MI
Sbjct: 121 SNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMI 180
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
++ Y+ L LF EM G+ D++T+ ++L C+HLG++ L GK H +I K
Sbjct: 181 NGHVEDSDYEEALSLFNEM-QLSGVKGDKVTMASLLIACTHLGALEL--GKWLHVYIEKE 237
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ E++ + T LVDMYAKCG ++ A+ VF+ M E++V++WTALI G A G AL LF
Sbjct: 238 KIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELF 297
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MQ + VKP+ +TF GVL AC H GLV+EG YF + +Y ++P I+HYGCMVD+ G+
Sbjct: 298 HEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGR 357
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG + EA ++I+ M + P+ + L+AC+ H +AER +Q + + P+N GG +
Sbjct: 358 AGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIEL-DPKN-GGTYV 415
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y+ + WE A+++R+LM+ +N++K G S I
Sbjct: 416 LLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAI 451
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 136/320 (42%), Gaps = 76/320 (23%)
Query: 47 FISHVYVATSLLHEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFER 106
F + VA LH+ S +AR +F+++P T N++I+GY+ +
Sbjct: 11 FSASKIVAFCALHDS--GSLPYARLVFNQIPNPTTFTCNSIIRGYTN-----------KN 57
Query: 107 MPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGL 166
+P + + LF +++ +GL PD+ T ++ C L
Sbjct: 58 LPRQAI---------------------LFYQLMMLQGLDPDRFTFPSLFKSCGVLCE--- 93
Query: 167 LMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGS 226
GK H K + + I L++MY+ CG L A VF+ M ++V+SW +I
Sbjct: 94 --GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAY 151
Query: 227 AH---------------------------RGYSED-----ALSLFEMMQATGVKPNEMTF 254
A G+ ED ALSLF MQ +GVK +++T
Sbjct: 152 AQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTM 211
Query: 255 TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR 314
+L AC H G ++ G K+ + E+ +E + +VD++ K G +E A V + M
Sbjct: 212 ASLLIACTHLGALELG-KWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMP 270
Query: 315 LEPNVIIWGSF---LAACKE 331
E +V+ W + LA C +
Sbjct: 271 -EKDVMTWTALIVGLAMCGQ 289
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 105/250 (42%), Gaps = 34/250 (13%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF++M V D ++ +L +CTH L + LH +I K V + T+L+
Sbjct: 193 LSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDM 252
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA----SW 115
Y S A ++F E+PE++ +TW +I G + G +A + F M + V ++
Sbjct: 253 YAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITF 312
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGS------------ 163
++AA +AG + G+ F M + G+ P G ++ G
Sbjct: 313 VGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMP 372
Query: 164 --------VGLLMGKSAHGFIVKNEWELNEQIA---------TILVDMYAKCGFLKYALM 206
VGLL HG +V E + I +L ++Y+ + A
Sbjct: 373 MAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKK 432
Query: 207 VFELMEERNV 216
+ ELM ERN+
Sbjct: 433 MRELMVERNI 442
>gi|347954488|gb|AEP33744.1| chloroplast biogenesis 19, partial [Aethionema grandiflorum]
Length = 413
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 146/387 (37%), Positives = 239/387 (61%), Gaps = 12/387 (3%)
Query: 15 DSFSILHILKSCTHF--NNLTVIHHLHSHILKLGFI-SHVYVATSLLHEYVV-TSFGFAR 70
+ + + ++ C F + T+ LH + KLG +HV V T++L Y FG AR
Sbjct: 16 NHITFIALISGCGDFPTGSETLGDLLHGYACKLGLDRTHVMVGTAILGMYSKRCRFGKAR 75
Query: 71 KLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDP 130
+FD + ++N+VTWNTMI Y +SG V A F+ MP ++ SW+AMI ++ G ++
Sbjct: 76 CVFDYMEDKNSVTWNTMIDAYMRSGKVDRAVKLFDEMPDPDLISWTAMINGFVKKGFHEE 135
Query: 131 GLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATI 190
L FREM G+ PD + I A L+ C++LG+ L G H +++ +++ N ++
Sbjct: 136 ALVWFREM-QISGVKPDYVAIIAALAACTNLGA--LSFGLWVHRYVLSQDFKNNVRVNNS 192
Query: 191 LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250
L+D+Y +CG +++A VF+ ME+R V+SW ++I GSA G + ++L F MQ G P+
Sbjct: 193 LIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGSAANGNAHESLVYFRKMQEEGFNPD 252
Query: 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI 310
+TFTG LTAC H GLV+EG +YF+ + +Y + PRI+HYGC+VDL+ +AG LE+A +++
Sbjct: 253 AVTFTGALTACSHVGLVEEGIQYFQTMKRDYKISPRIEHYGCLVDLYSRAGRLEDALKLV 312
Query: 311 RTMRLEPNVIIWGSFLAACKEH-KQFDMAERVIKQALRM-VKPENDGGVFTLICDLYTMN 368
++M ++PN ++ GS LAAC+ H ++AER++K M VK ++ + ++ ++Y +
Sbjct: 313 QSMSMKPNEVVIGSLLAACRTHGNNTELAERLMKHLSEMNVKGHSN---YVILSNMYAAD 369
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
KWEGA ++R+ M ++K G S I
Sbjct: 370 GKWEGAXKMRRKMKGLGLKKQPGFSSI 396
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 103/232 (44%), Gaps = 43/232 (18%)
Query: 130 PGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE-QIA 188
PG++L G P+ +T A++SGC + +G HG+ K + +
Sbjct: 6 PGMRL-------AGFEPNHITFIALISGCGDFPTGSETLGDLLHGYACKLGLDRTHVMVG 58
Query: 189 TILVDMYAK-CGFLKYALMVFELMEERN-------------------------------V 216
T ++ MY+K C F K A VF+ ME++N +
Sbjct: 59 TAILGMYSKRCRFGK-ARCVFDYMEDKNSVTWNTMIDAYMRSGKVDRAVKLFDEMPDPDL 117
Query: 217 ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKM 276
ISWTA+I G +G+ E+AL F MQ +GVKP+ + L AC + G + G +
Sbjct: 118 ISWTAMINGFVKKGFHEEALVWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWVHRY 177
Query: 277 IDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
+ + D + ++ ++DL+ + G +E A EV M + V+ W S +
Sbjct: 178 VLSQ-DFKNNVRVNNSLIDLYCRCGCVEFAREVFDKME-KRTVVSWNSVIVG 227
>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 616
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 146/394 (37%), Positives = 237/394 (60%), Gaps = 6/394 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF +M + D F+ +++L C+ +L + ++H I G + V +L+ Y
Sbjct: 176 LFRKMREWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYA 235
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+ A+ +FD E+N V+W +MI Y++ G++ AR F++MP +NV SW++MI+
Sbjct: 236 KCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISC 295
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
YL G Y L LF +M N + PD+ T+ ++L+ CS LG L+MGK H +I+ N+
Sbjct: 296 YLREGQYREALDLFNKM-RNSRVVPDEATLVSILAACSQLGD--LVMGKKIHNYILSNKG 352
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ L+DMYAKCG + AL +F M +N++SW +I A G +A+ LFE
Sbjct: 353 AYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEE 412
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
MQA G P+E+T TG+L+AC H+GLVD G YF + Y + I+HY CMVDL G+ G
Sbjct: 413 MQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGG 472
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L EA E+I M ++P+V++WG+ L AC+ H ++ ++++KQ L + +P + GG++ LI
Sbjct: 473 LLGEAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLEL-EPHS-GGLYVLI 530
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y ++WE +++RKLM+++ ++K R S I
Sbjct: 531 SNIYWEAQRWEDVKKIRKLMIDRGIKKGRAISSI 564
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 101/366 (27%), Positives = 156/366 (42%), Gaps = 76/366 (20%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF +M + + F++ +LK+C + +H +KLG S V+V +L+ YV
Sbjct: 75 LFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYV 134
Query: 63 VTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
V ARKLFD++ ++ V+WN+MI GY+ GN EA F +M
Sbjct: 135 VCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKM-------------- 180
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
RE G+ PD T +LS CS S L +G+ H I
Sbjct: 181 --------------REW----GMEPDGFTFVNLLSVCSQ--SRDLDLGRYVHFCIEITGV 220
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE-------- 233
+++ + LVDMYAKCG L A +F+ +E+NV+SWT++I A G E
Sbjct: 221 KIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQ 280
Query: 234 -----------------------DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
+AL LF M+ + V P+E T +L AC G + G
Sbjct: 281 MPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMG 340
Query: 271 RKYFKMIDEEYDLEPR----IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
+K Y L + + Y ++D++ K G + A ++ M N++ W +
Sbjct: 341 KKI-----HNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMP-GKNLVSWNVII 394
Query: 327 AACKEH 332
A H
Sbjct: 395 GALALH 400
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 143/317 (45%), Gaps = 53/317 (16%)
Query: 38 LHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDELPERNAVTWNTMIKGYSKS 94
LH+ I+ G + L+ V G +A+++FD++P+ N +N++I+GYS S
Sbjct: 7 LHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNS 66
Query: 95 GNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAV 154
+ +A + LFR MI + GL+P++ T+ V
Sbjct: 67 DDPIDA-------------------------------VLLFRRMICS-GLSPNEFTLPFV 94
Query: 155 LSGCSHLGSVGLLMGKSA-------HGFIVKNEWELNEQIATILVDMYAKCGFLKYALMV 207
L C KSA HG +K + L+ +Y CG + A +
Sbjct: 95 LKACG---------CKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKL 145
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
F+ + ++ ++SW ++I G AH G ++A LF M+ G++P+ TF +L+ C + +
Sbjct: 146 FDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSRDL 205
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
D GR Y E ++ I +VD++ K G L A + + E NV+ W S ++
Sbjct: 206 DLGR-YVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQ-EKNVVSWTSMIS 263
Query: 328 ACKEHKQFDMAERVIKQ 344
A +H ++A ++ Q
Sbjct: 264 AYAQHGSIEVARQIFDQ 280
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 125/319 (39%), Gaps = 82/319 (25%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF++M V D +++ IL +C+ +L + +H++IL V + SL+
Sbjct: 306 LDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDM 365
Query: 61 Y-----VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASW 115
Y VVT A +F E+P +N V+WN +I + G EA
Sbjct: 366 YAKCGPVVT----ALDIFLEMPGKNLVSWNVIIGALALHGCGLEA--------------- 406
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
+KLF EM +G PD++T+ +LS CSH G
Sbjct: 407 ----------------IKLFEEM-QADGTLPDEITLTGLLSACSHSG------------- 436
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
LVDM G + M R + + ++ G +A
Sbjct: 437 ---------------LVDM----GLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEA 477
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
+ L M +KP+ + + +L AC G V+ G++ K + E LEP H G +
Sbjct: 478 IELIGRMP---MKPDVVVWGALLGACRIHGNVEIGKQILKQLLE---LEP---HSGGLYV 528
Query: 296 LFGKAGFLEEAYEVIRTMR 314
L + + +E ++ +R
Sbjct: 529 LISNIYWEAQRWEDVKKIR 547
>gi|242066664|ref|XP_002454621.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
gi|241934452|gb|EES07597.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
Length = 496
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 146/388 (37%), Positives = 234/388 (60%), Gaps = 12/388 (3%)
Query: 13 PSDSFSILHILKSCTHFNNLTVIHHL----HSHILKLGFISHVYVATSLLHEYVVTSFG- 67
P+D ++L +L +C + + L H+ LKL F SH+ ++T L Y+ +
Sbjct: 67 PND-VTLLTVLSACADSPSSPLARPLALTLHARALKL-FPSHLLLSTCLARFYLASRLPH 124
Query: 68 FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
A +LFD +P R+ VT+NTM+ G ++G V A + F+ MP + SW+A+I ++ G
Sbjct: 125 LALQLFDTMPVRSVVTYNTMVSGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGR 184
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
+D + FR M+ + + PD +T+ AV+S C+ +G++GL G H +++ E N ++
Sbjct: 185 HDEAIDCFRAMLLDS-VEPDYVTLIAVVSACAEVGALGL--GMWVHRLVLRQGLERNVRV 241
Query: 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
A L+DMYA+CG +K A VF + +R V+SW ++I G A G +A+ LFE M+ G
Sbjct: 242 ANSLIDMYARCGQVKLAAQVFHSIRKRTVVSWNSMIVGLAANGLCTEAIELFEEMRRQGF 301
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
KP+ +T TGVLTAC H GL + G +Y+ ++ EY + R++HYGC+VDL G+AG L+EA
Sbjct: 302 KPDAVTLTGVLTACSHAGLTEHGLRYYDLMTTEYGIAARMEHYGCVVDLLGRAGRLDEAM 361
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM 367
V+ TM + PN ++ G+ LA C+ H DMAE+++ Q L + P D + L+ ++Y
Sbjct: 362 HVVETMPMRPNEVVLGALLAGCRMHGDLDMAEQLM-QHLFELDPGGDAN-YVLLSNIYAA 419
Query: 368 NEKWEGAERVRKLMLNQNVRKARGSSVI 395
KW+GA +VR LM + V+K G S++
Sbjct: 420 VGKWDGAGKVRSLMKARGVKKRPGHSIV 447
>gi|297811669|ref|XP_002873718.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319555|gb|EFH49977.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 548
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 150/430 (34%), Positives = 247/430 (57%), Gaps = 43/430 (10%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL---- 58
L+++M ++ V D ++ +LK+C+ + +H +++ GF+ + YV +L+
Sbjct: 99 LYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAIHGKVVRHGFLLNEYVKNALILFHA 158
Query: 59 ------------------HEYVVTSF--GFARK--------LFDELPERNAVTWNTMIKG 90
H+ +S G+A++ LFDE+P+++ V WN MI G
Sbjct: 159 NCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPDKDQVAWNVMITG 218
Query: 91 YSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMT 150
K + AR+ F+R ++V +W+AMI+ Y+N G L +F+EM + G PD +T
Sbjct: 219 CLKCREMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALSIFKEM-RDAGEHPDVVT 277
Query: 151 IGAVLSGCSHLGSVGLLMGKSAHGFI-----VKNEWELNEQIATILVDMYAKCGFLKYAL 205
I ++LS C+ LG L GK H +I V + + I L+DMYAKCG + A+
Sbjct: 278 ILSLLSACAVLGD--LETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAI 335
Query: 206 MVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG 265
VF M++R++ +W LI G A ++E ++ +FE MQ V PNE+TF GV+ AC H+G
Sbjct: 336 EVFRGMKDRDLSTWNTLIVGLALH-HAEGSVEMFEEMQRLKVWPNEVTFIGVILACSHSG 394
Query: 266 LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSF 325
VDEGRKYF ++ + Y++EP I+HYGCMVD+ G+AG LEEA+ + +M++EPN I+W +
Sbjct: 395 RVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGLLEEAFMFVESMKIEPNAIVWRTL 454
Query: 326 LAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQN 385
L ACK + ++ + ++ L M K E+ G + L+ ++Y +W+G ++VRK+ +
Sbjct: 455 LGACKIYGNVELGKYANEKLLSMRKDES--GDYVLLSNIYASTGQWDGVQKVRKMFDDTR 512
Query: 386 VRKARGSSVI 395
V+K G S+I
Sbjct: 513 VKKPTGISLI 522
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 149/324 (45%), Gaps = 52/324 (16%)
Query: 24 KSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDELPERN 80
++C +F L +H+ ++ G +S++ V L++ ++ G +A KLF+E+P+ +
Sbjct: 20 QNCKNFRTLM---QIHAFMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFEEIPKPD 76
Query: 81 AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMIS 140
N +++G ++S P + VA L+ EM
Sbjct: 77 VSICNHVLRGSAQSLK-----------PEKTVA--------------------LYTEM-E 104
Query: 141 NEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGF 200
G++PD+ T VL CS L G + HG +V++ + LNE + L+ +A CG
Sbjct: 105 KRGVSPDRYTFTFVLKACSKLEWRS--NGFAIHGKVVRHGFLLNEYVKNALILFHANCGD 162
Query: 201 LKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260
L A +F+ + + ++W+++ G A RG ++A+ LF+ M +++ + ++T
Sbjct: 163 LGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMP----DKDQVAWNVMITG 218
Query: 261 CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR---LEP 317
C+ +D R+ F E+ + + M+ + G+ +EA + + MR P
Sbjct: 219 CLKCREMDSARELFDRFTEK-----DVVTWNAMISGYVNCGYPKEALSIFKEMRDAGEHP 273
Query: 318 NVIIWGSFLAACKEHKQFDMAERV 341
+V+ S L+AC + +R+
Sbjct: 274 DVVTILSLLSACAVLGDLETGKRL 297
>gi|225432514|ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial [Vitis vinifera]
Length = 694
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 141/396 (35%), Positives = 235/396 (59%), Gaps = 8/396 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++++ M R V + I+ ++ +C ++ H I++ GF + ++ +++H
Sbjct: 301 LRMYRSMLRTGVGPNEVMIVDLISACGRTMAVSEGQQFHGIIVRTGFDCYDFIQATIIHF 360
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A F+ + + +WN +I G+ ++G + +AR F+ MP R+V SWS+MI
Sbjct: 361 YAACGEINLAFLQFELGSKDHVSSWNALISGFVRNGMIEQARQLFDEMPERDVFSWSSMI 420
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y D L+LF EM++ G+ P+++T+ +V S + LG+ L+ G+ AH +I+ N
Sbjct: 421 SGYSQNEQPDLALQLFHEMVAG-GVQPNEITMVSVFSAIATLGT--LMEGRWAHEYILSN 477
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEER--NVISWTALICGSAHRGYSEDALS 237
LN+ + L+DMYAKCG + AL +F +++R +V W A+ICG A G++ +L
Sbjct: 478 SIPLNDNLNAALIDMYAKCGSITIALQLFYEIQDRVSSVSPWNAIICGLAMHGHANVSLK 537
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LF +Q +KPN +TF GVL+AC H GLVD G KYFK + Y++EP I+HYGCM+DL
Sbjct: 538 LFSQLQRVRIKPNSITFIGVLSACCHAGLVDTGEKYFKGMKNLYNIEPNIKHYGCMIDLL 597
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
G+AG L+EA E+IR M ++ +V+IWG+ LAAC+ H ++ ER + ++ G V
Sbjct: 598 GRAGRLKEAAEMIRKMPMKADVVIWGTLLAACRTHGNVEIGERAAENLAKLDISHGAGRV 657
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
L+ ++Y +W+ A VR+ M +Q ++K+ G S
Sbjct: 658 --LLSNIYADAGRWDDAFLVRRAMQSQRMKKSPGCS 691
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 128/452 (28%), Positives = 206/452 (45%), Gaps = 71/452 (15%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+F M V + ++ ++ + +H + LH+ KLG + VAT+L+H Y
Sbjct: 171 VFKDMRFAGVIPNEVTLASVISAYSHVGGILNCRMLHALSFKLGLEALNIVATNLVHMYC 230
Query: 63 V-TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
V +S G AR LFDE+PERN VTWN M+ GYSKSG V ARD FER+P ++V SW +I
Sbjct: 231 VCSSLGNARVLFDEIPERNVVTWNVMLNGYSKSGLVDLARDLFERIPAKDVVSWGTIIDG 290
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ L+++R M+ G+ P+++ I ++S C +V G+ HG IV+ +
Sbjct: 291 YVQIERLGEALRMYRSMLRT-GVGPNEVMIVDLISACGRTMAVS--EGQQFHGIIVRTGF 347
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFEL------------------------------- 210
+ + I ++ YA CG + A + FEL
Sbjct: 348 DCYDFIQATIIHFYAACGEINLAFLQFELGSKDHVSSWNALISGFVRNGMIEQARQLFDE 407
Query: 211 MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
M ER+V SW+++I G + + AL LF M A GV+PNE+T V +A G + EG
Sbjct: 408 MPERDVFSWSSMISGYSQNEQPDLALQLFHEMVAGGVQPNEITMVSVFSAIATLGTLMEG 467
Query: 271 R---KYF-------------KMIDEE-------------YDLEPRIQHYG------CMVD 295
R +Y +ID Y+++ R+ C +
Sbjct: 468 RWAHEYILSNSIPLNDNLNAALIDMYAKCGSITIALQLFYEIQDRVSSVSPWNAIICGLA 527
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
+ G A + + ++ +R++PN I + L+AC D E+ K + E +
Sbjct: 528 MHGHANVSLKLFSQLQRVRIKPNSITFIGVLSACCHAGLVDTGEKYFKGMKNLYNIEPNI 587
Query: 356 GVFTLICDLYTMNEKW-EGAERVRKLMLNQNV 386
+ + DL + E AE +RK+ + +V
Sbjct: 588 KHYGCMIDLLGRAGRLKEAAEMIRKMPMKADV 619
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 113/440 (25%), Positives = 198/440 (45%), Gaps = 71/440 (16%)
Query: 17 FSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSF-GFARKLFDE 75
+++ LKSC+ L+ +HS + K G +S+++V SL+ YV AR LFD
Sbjct: 53 LTLVSALKSCSSLLALSQGQQIHSLVFKSGLLSNIFVKNSLISFYVKCRLISNARSLFDT 112
Query: 76 LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF 135
+ V+ N M+ GY KSG++ AR FE+MP++ S++ M+ + + +F
Sbjct: 113 CSVLDPVSCNIMLAGYVKSGSLDNARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIGVF 172
Query: 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY 195
++M G+ P+++T+ +V+S SH+G G+L + H K E +AT LV MY
Sbjct: 173 KDM-RFAGVIPNEVTLASVISAYSHVG--GILNCRMLHALSFKLGLEALNIVATNLVHMY 229
Query: 196 AKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQA----------- 244
C L A ++F+ + ERNV++W ++ G + G + A LFE + A
Sbjct: 230 CVCSSLGNARVLFDEIPERNVVTWNVMLNGYSKSGLVDLARDLFERIPAKDVVSWGTIID 289
Query: 245 --------------------TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE---- 280
TGV PNE+ +++AC T V EG+++ +I
Sbjct: 290 GYVQIERLGEALRMYRSMLRTGVGPNEVMIVDLISACGRTMAVSEGQQFHGIIVRTGFDC 349
Query: 281 YDL--------------------------EPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR 314
YD + + + ++ F + G +E+A ++ M
Sbjct: 350 YDFIQATIIHFYAACGEINLAFLQFELGSKDHVSSWNALISGFVRNGMIEQARQLFDEMP 409
Query: 315 LEPNVIIWGSFLAACKEHKQFDMAERVIKQALR-MVKPENDG--GVFTLICDLYTMNEKW 371
E +V W S ++ +++Q D+A ++ + + V+P VF+ I L T+ E
Sbjct: 410 -ERDVFSWSSMISGYSQNEQPDLALQLFHEMVAGGVQPNEITMVSVFSAIATLGTLMEGR 468
Query: 372 EGAERV--RKLMLNQNVRKA 389
E + + LN N+ A
Sbjct: 469 WAHEYILSNSIPLNDNLNAA 488
>gi|414883628|tpg|DAA59642.1| TPA: hypothetical protein ZEAMMB73_113196, partial [Zea mays]
Length = 635
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 140/363 (38%), Positives = 217/363 (59%), Gaps = 7/363 (1%)
Query: 37 HLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELP-ERNAVTWNTMIKGYSKS 94
H+H+ +K G +YV + +H Y V RK+FDELP R+ VTWN ++ GY ++
Sbjct: 153 HVHALAVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNAVLAGYVRA 212
Query: 95 GNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAV 154
G V AR+ F+ MP+R+ SWS +I Y+ G + L +F+ M++ +G+ ++ I
Sbjct: 213 GMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVA-QGVKANEAAIVTA 271
Query: 155 LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER 214
LS + LG L GK H + + ++ + L+DMY+KCG + A VF+ M R
Sbjct: 272 LSAAAQLGL--LEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRR 329
Query: 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF 274
+V +W ++ICG A G DA+ LFE + G P +TF GVL AC TGLVDEGR+YF
Sbjct: 330 DVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYF 389
Query: 275 KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
K++ E+YD+E ++HYGCMVDL +AG ++EA E+I MR+ P+ ++WG+ L+ACK H
Sbjct: 390 KLMAEKYDIESEMEHYGCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWGTILSACKRHGL 449
Query: 335 FDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSV 394
D+ V + + + P +D G + L+ +Y +KW+ +VRKLM N+ K+ G S+
Sbjct: 450 VDLGITVGNKLIEL-DPAHD-GYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKSAGWSL 507
Query: 395 ISS 397
+ +
Sbjct: 508 MEA 510
>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
Length = 583
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 136/316 (43%), Positives = 202/316 (63%), Gaps = 5/316 (1%)
Query: 80 NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI 139
N V N M+ Y K+G EA++ F+ +P R++ SW+ MI + + L+LF M+
Sbjct: 236 NLVLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELF-SMM 294
Query: 140 SNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG 199
G++PD + + +VLS C+ LG+ L G H +I + + + I T +VDMYAKCG
Sbjct: 295 RTLGISPDAIILTSVLSACASLGT--LDFGTWVHEYINQRGIKWDIHIGTAIVDMYAKCG 352
Query: 200 FLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLT 259
++ AL +F M +RN +W AL+CG A G +AL+LFE+M +GVKPNE+TF +LT
Sbjct: 353 CIEMALKIFYSMSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILT 412
Query: 260 ACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNV 319
AC H GLVDEGRKYF + + Y+L P+++HYGCM+DLF +AG LEEA E+ RTM ++P+V
Sbjct: 413 ACCHCGLVDEGRKYFDNMSKLYNLLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPDV 472
Query: 320 IIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRK 379
+IWG L AC +++ R+ L + +D GVF L+ ++ +N++W R+R+
Sbjct: 473 LIWGLLLNACTTVGNIELSHRIQDYILEL--DHDDSGVFVLLSNISAINQRWSNVTRLRR 530
Query: 380 LMLNQNVRKARGSSVI 395
LM ++ VRKA GSSVI
Sbjct: 531 LMKDRGVRKAPGSSVI 546
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 159/332 (47%), Gaps = 39/332 (11%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ ++ +M R D F+ +LK+C++F+ +H ++KLG ++ YV
Sbjct: 90 VSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHGVVVKLGLLADHYVQ------ 143
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
N++I+ Y G+ A F+ M +R+V SW+++I+
Sbjct: 144 ------------------------NSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLIS 179
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
++ AG +D + +F M + P T+ +VL+ C+ G L GK HG +++
Sbjct: 180 GFMKAGHFDEAISVFFRM----DVEPSMTTLVSVLAACARNGD--LCTGKGIHG-VIERR 232
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+++N + ++DMY K G A +F+ + R+++SWT +I G + + +L LF
Sbjct: 233 FKVNLVLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFS 292
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
MM+ G+ P+ + T VL+AC G +D G + I++ ++ I +VD++ K
Sbjct: 293 MMRTLGISPDAIILTSVLSACASLGTLDFGTWVHEYINQR-GIKWDIHIGTAIVDMYAKC 351
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
G +E A ++ +M + N W + L H
Sbjct: 352 GCIEMALKIFYSMS-QRNTFTWNALLCGLAMH 382
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 5/151 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LFS M + D+ + +L +C L +H +I + G +++ T+++
Sbjct: 288 LELFSMMRTLGISPDAIILTSVLSACASLGTLDFGTWVHEYINQRGIKWDIHIGTAIVDM 347
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA----SW 115
Y A K+F + +RN TWN ++ G + G V EA + FE M + V ++
Sbjct: 348 YAKCGCIEMALKIFYSMSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITF 407
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
A++ A + G D G K F M L P
Sbjct: 408 LAILTACCHCGLVDEGRKYFDNMSKLYNLLP 438
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 79/197 (40%), Gaps = 36/197 (18%)
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNV----ISWTALICG 225
+ H +V + ++ + + +++ +A F++Y + +E+ N + +LI G
Sbjct: 22 RQIHAQLVTSGLVYDDFVTSKVMEFFAN--FVEYGDYACDYLEQGNTRLGSFPFNSLING 79
Query: 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKY------FKMIDE 279
+ + A+S++ M G P+ TF +L AC + EGR+ ++ +
Sbjct: 80 YVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHGVVVKLGLLAD 139
Query: 280 EYDLEPRIQHYGCMVDL------------------------FGKAGFLEEAYEVIRTMRL 315
Y I+ YG D F KAG +EA V M +
Sbjct: 140 HYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFDEAISVFFRMDV 199
Query: 316 EPNVIIWGSFLAACKEH 332
EP++ S LAAC +
Sbjct: 200 EPSMTTLVSVLAACARN 216
>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 531
Score = 278 bits (710), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 146/384 (38%), Positives = 223/384 (58%), Gaps = 8/384 (2%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLF 73
D+F+ +LK +++ +H + GF S V+V T L+ Y G ARK+F
Sbjct: 115 DTFTFPFVLKIVVRVSDVWFGRQVHGQAVVFGFDSSVHVVTGLIQMYSSCGGLGDARKVF 174
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP--LRNVASWSAMIAAYLNAGAYDPG 131
DE+ R+ WN ++ GY K G + EAR E MP +RN SW+ +I+ Y +G
Sbjct: 175 DEMRVRDVNVWNALLAGYGKVGEMDEARGLLEMMPCWVRNAVSWTCVISGYARSGRASEA 234
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
+++F+ M+ E + PD++T+ AVLS C+ LGS L +G+ ++ + +
Sbjct: 235 IEVFQRMLM-ENVDPDEVTLLAVLSACADLGS--LELGERICSYVDHRGMNRAVSLNNAV 291
Query: 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE 251
+DMYAK G + AL VFE + ERNV++WT +I G A G+ +AL +F+ M GVKPN+
Sbjct: 292 IDMYAKSGNITKALEVFESVNERNVVTWTTIITGLATHGHGAEALVMFDRMVKAGVKPND 351
Query: 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR 311
+TF +L+AC H G VD G ++F + +Y + P I+HYGCM+DL G+AG L EA EVI+
Sbjct: 352 VTFIAILSACSHVGWVDLGNRFFNSMRSKYGINPNIEHYGCMIDLLGRAGKLREAEEVIK 411
Query: 312 TMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKW 371
+M E N IWGS LAA H D+ ER + Q +++ +P N G + L+ +LY+ +W
Sbjct: 412 SMPFESNAAIWGSLLAASNVHHDIDVGERALYQLIKL-EPNNSGN-YMLLANLYSNLGRW 469
Query: 372 EGAERVRKLMLNQNVRKARGSSVI 395
+ + +RK+M V+K G S I
Sbjct: 470 DESRMMRKMMKGIGVKKLAGESSI 493
>gi|357143748|ref|XP_003573036.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Brachypodium distachyon]
Length = 484
Score = 278 bits (710), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 144/388 (37%), Positives = 229/388 (59%), Gaps = 11/388 (2%)
Query: 13 PSDSFSILHILKSCTHFNNLTVIH----HLHSHILKLGFISHVYVATSLLHEYVVTSFG- 67
P + ++L +L +C ++ + LH+ +KL F ++ + T L Y+ +
Sbjct: 65 PPNDVTLLTVLSACAGDSSSALARPLALSLHALAVKL-FPCNLLLCTCLARFYLASRLPH 123
Query: 68 FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
A KLFD +P+R+ VT+NTMI G ++G V AR+ F+ MP + SW+A+I + G
Sbjct: 124 LAIKLFDSMPDRSVVTYNTMITGLMRNGLVAAAREVFDEMPAPDKVSWTALIDGCVKNGR 183
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
+D + F M+ +G+ PD +T+ A +S C+ +G++GL G H F+V E N ++
Sbjct: 184 HDEAIDCFHSML-RDGVEPDYVTLVAAISACAEVGALGL--GMWVHRFVVDKRLEHNVRV 240
Query: 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
A L+DMYA+CG + +A VF + +R V+SW ++I G A G DA+ FE M+ G
Sbjct: 241 ANSLIDMYARCGQVDFARQVFGRIRKRTVVSWNSMIVGFAANGQYADAVEHFEAMRREGF 300
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
KP+ +TFTGVLTAC H GL DEG +Y+ + E+ + R++HYGC+VDL G+AG L EA
Sbjct: 301 KPDTVTFTGVLTACSHAGLTDEGLRYYDAMRTEHGIAARMEHYGCVVDLLGRAGRLGEAM 360
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM 367
V+ +M + PN ++ G+ LA C+ H D+AE++++ L P D + L+ ++Y
Sbjct: 361 RVVESMPMRPNEVVLGALLAGCRMHGDVDLAEQLMQHLLEQ-DPGGDSN-YVLLSNIYAA 418
Query: 368 NEKWEGAERVRKLMLNQNVRKARGSSVI 395
KW GA +VR LM ++ V+K G S +
Sbjct: 419 VGKWGGAGKVRSLMKSRGVKKRPGQSTV 446
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 110/265 (41%), Gaps = 37/265 (13%)
Query: 105 ERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL-TPDQMTIGAVLSGCSHLGS 163
R+P R+V SW++ IA G M+S+ P+ +T+ VLS C+ S
Sbjct: 24 RRLPPRDVVSWTSAIARPAREGDLQGAAAALSAMLSSPAAPPPNDVTLLTVLSACAGDSS 83
Query: 164 VGLL--MGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNV----- 216
L + S H VK + N + T L Y A+ +F+ M +R+V
Sbjct: 84 SALARPLALSLHALAVK-LFPCNLLLCTCLARFYLASRLPHLAIKLFDSMPDRSVVTYNT 142
Query: 217 --------------------------ISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250
+SWTALI G G ++A+ F M GV+P+
Sbjct: 143 MITGLMRNGLVAAAREVFDEMPAPDKVSWTALIDGCVKNGRHDEAIDCFHSMLRDGVEPD 202
Query: 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI 310
+T ++AC G + G + + ++ LE ++ ++D++ + G ++ A +V
Sbjct: 203 YVTLVAAISACAEVGALGLGMWVHRFVVDKR-LEHNVRVANSLIDMYARCGQVDFARQVF 261
Query: 311 RTMRLEPNVIIWGSFLAACKEHKQF 335
+R + V+ W S + + Q+
Sbjct: 262 GRIR-KRTVVSWNSMIVGFAANGQY 285
>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05750, chloroplastic-like [Cucumis sativus]
Length = 525
Score = 278 bits (710), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 143/396 (36%), Positives = 236/396 (59%), Gaps = 9/396 (2%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVI--HHLHSHILKLGF-ISHVYVATSLLHE 60
F++M V + + + +L +C F + + LH + K G HV V T+L+
Sbjct: 80 FTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLHGYACKYGLDTGHVMVGTALIDM 139
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y G ARK+F L +N+V+WNTM+ G+ ++G + A F+ MP R+ SW+A+I
Sbjct: 140 YSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALI 199
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
L G + L+ F +M G+ D ++I AVL+ C+ LG+ L +G H F++
Sbjct: 200 NGLLKHGYSEQALECFHQM-QRSGVAADYVSIIAVLAACADLGA--LTLGLWVHRFVMPQ 256
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
E++ N +I+ L+DMY++CG +++A VF M +R ++SW ++I G A G+++++L F
Sbjct: 257 EFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFF 316
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MQ G KP+ +++TG LTAC H GLV++G + F + + + PRI+HYGC+VDL+G+
Sbjct: 317 XAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYGR 376
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG LE+A +I M ++PN ++ GS LAAC+ H ++AER++K ++ PE D +
Sbjct: 377 AGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMKHLFKL-DPEGD-AYYV 434
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y KW+GA VR+ M + V+K G S +
Sbjct: 435 LLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSV 470
>gi|356502600|ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 518
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 145/400 (36%), Positives = 233/400 (58%), Gaps = 12/400 (3%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+F++M + D+++I ++LK+C + ++ +H + KLG + ++V SL+ Y
Sbjct: 91 HVFTKMLHNGLGPDNYTIPYVLKACAALRDCSLGKMVHGYSSKLGLVFDIFVGNSLMAMY 150
Query: 62 -VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
V AR +FDE+P +AV+W+ MI GY+K G+V AR FF+ P ++ W AMI+
Sbjct: 151 SVCGDVIAARHVFDEMPRLSAVSWSVMISGYAKVGDVDSARLFFDEAPEKDRGIWGAMIS 210
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y+ + GL LFR ++ + PD+ ++LS C+HLG+ L +G H ++ +
Sbjct: 211 GYVQNSCFKEGLYLFR-LLQLTHVVPDESIFVSILSACAHLGA--LDIGIWIHRYLNRKT 267
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
L+ +++T L+DMYAKCG L+ A +F+ M ER+++ W A+I G A G AL +F
Sbjct: 268 VSLSIRLSTSLLDMYAKCGNLELAKRLFDSMPERDIVCWNAMISGLAMHGDGASALKMFS 327
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ TG+KP+++TF V TAC ++G+ EG + + Y++EP+ +HYGC+VDL +A
Sbjct: 328 EMEKTGIKPDDITFIAVFTACSYSGMAHEGLQLLDKMSSLYEIEPKSEHYGCLVDLLSRA 387
Query: 301 GFLEEAYEVIRTMRL-----EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
G EA +IR + + W +FL+AC H Q +AER K+ LR+ EN
Sbjct: 388 GLFGEAMVMIRRITSTSWNGSEETLAWRAFLSACCNHGQAQLAERAAKRLLRL---ENHS 444
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
GV+ L+ +LY + K A RVR +M N+ V KA G S +
Sbjct: 445 GVYVLLSNLYAASGKHSDARRVRNMMRNKGVDKAPGCSSV 484
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/370 (22%), Positives = 151/370 (40%), Gaps = 76/370 (20%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL----HEYVVTSFGFARKLFDE 75
L +L+ C + N+L H+ + G ++ + + LL H Y S +A ++F+
Sbjct: 9 LVLLEKCKNVNHLK---QAHAQVFTTGLDTNTFALSRLLAFCSHPYQ-GSLTYACRVFER 64
Query: 76 LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF 135
+ NT+IK + +GN + +F
Sbjct: 65 IHHPTLCICNTIIKTFLVNGN-------------------------------FYGTFHVF 93
Query: 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY 195
+M+ N GL PD TI VL C+ L L GK HG+ K + + L+ MY
Sbjct: 94 TKMLHN-GLGPDNYTIPYVLKACAALRDCSL--GKMVHGYSSKLGLVFDIFVGNSLMAMY 150
Query: 196 AKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA-------------------- 235
+ CG + A VF+ M + +SW+ +I G A G + A
Sbjct: 151 SVCGDVIAARHVFDEMPRLSAVSWSVMISGYAKVGDVDSARLFFDEAPEKDRGIWGAMIS 210
Query: 236 -----------LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLE 284
L LF ++Q T V P+E F +L+AC H G +D G + ++ + +
Sbjct: 211 GYVQNSCFKEGLYLFRLLQLTHVVPDESIFVSILSACAHLGALDIGIWIHRYLNRK-TVS 269
Query: 285 PRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
I+ ++D++ K G LE A + +M E +++ W + ++ H A ++ +
Sbjct: 270 LSIRLSTSLLDMYAKCGNLELAKRLFDSMP-ERDIVCWNAMISGLAMHGDGASALKMFSE 328
Query: 345 ALRM-VKPEN 353
+ +KP++
Sbjct: 329 MEKTGIKPDD 338
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 101/245 (41%), Gaps = 46/245 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF + V D + IL +C H L + +H ++ + + ++TSLL
Sbjct: 222 LYLFRLLQLTHVVPDESIFVSILSACAHLGALDIGIWIHRYLNRKTVSLSIRLSTSLLDM 281
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + A++LFD +PER+ V WN MI G + G+ A
Sbjct: 282 YAKCGNLELAKRLFDSMPERDIVCWNAMISGLAMHGDGASA------------------- 322
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV--GL-LMGKSAHGFI 176
LK+F EM G+ PD +T AV + CS+ G GL L+ K + +
Sbjct: 323 ------------LKMFSEM-EKTGIKPDDITFIAVFTACSYSGMAHEGLQLLDKMSSLY- 368
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERN------VISWTALICGSAHRG 230
E E + LVD+ ++ G A+++ + + ++W A + + G
Sbjct: 369 ---EIEPKSEHYGCLVDLLSRAGLFGEAMVMIRRITSTSWNGSEETLAWRAFLSACCNHG 425
Query: 231 YSEDA 235
++ A
Sbjct: 426 QAQLA 430
>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
Length = 637
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 140/363 (38%), Positives = 217/363 (59%), Gaps = 7/363 (1%)
Query: 37 HLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELP-ERNAVTWNTMIKGYSKS 94
H+H+ +K G +YV + +H Y V RK+FDELP R+ VTWN ++ GY ++
Sbjct: 153 HVHALAVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNAVLAGYVRA 212
Query: 95 GNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAV 154
G V AR+ F+ MP+R+ SWS +I Y+ G + L +F+ M++ +G+ ++ I
Sbjct: 213 GMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVA-QGVKANEAAIVTA 271
Query: 155 LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER 214
LS + LG L GK H + + ++ + L+DMY+KCG + A VF+ M R
Sbjct: 272 LSAAAQLGL--LEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRR 329
Query: 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF 274
+V +W ++ICG A G DA+ LFE + G P +TF GVL AC TGLVDEGR+YF
Sbjct: 330 DVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYF 389
Query: 275 KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
K++ E+YD+E ++HYGCMVDL +AG ++EA E+I MR+ P+ ++WG+ L+ACK H
Sbjct: 390 KLMAEKYDIESEMEHYGCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWGTILSACKRHGL 449
Query: 335 FDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSV 394
D+ V + + + P +D G + L+ +Y +KW+ +VRKLM N+ K+ G S+
Sbjct: 450 VDLGITVGNKLIEL-DPAHD-GYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKSAGWSL 507
Query: 395 ISS 397
+ +
Sbjct: 508 MEA 510
>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Glycine max]
Length = 521
Score = 277 bits (709), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 142/399 (35%), Positives = 238/399 (59%), Gaps = 14/399 (3%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHH---LHSHILKLGF-ISHVYVATSLLH 59
F QM ++ + + + +L +C H+ + + I +H+H+ KLG I+ V V T+L+
Sbjct: 79 FVQMREAAIEPNHITFITLLSACAHYPSRSSISFGTAIHAHVRKLGLDINDVMVGTALID 138
Query: 60 EYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y AR FD++ RN V+WNTMI GY ++G +A F+ +P++N SW+A+
Sbjct: 139 MYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRNGKFEDALQVFDGLPVKNAISWTAL 198
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I ++ ++ L+ FREM G+ PD +T+ AV++ C++LG++GL G H ++
Sbjct: 199 IGGFVKKDYHEEALECFREM-QLSGVAPDYVTVIAVIAACANLGTLGL--GLWVHRLVMT 255
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
++ N +++ L+DMY++CG + A VF+ M +R ++SW ++I G A G +++ALS
Sbjct: 256 QDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTLVSWNSIIVGFAVNGLADEALSY 315
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F MQ G KP+ +++TG L AC H GL+ EG + F+ + + PRI+HYGC+VDL+
Sbjct: 316 FNSMQEEGFKPDGVSYTGALMACSHAGLIGEGLRIFEHMKRVRRILPRIEHYGCLVDLYS 375
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG-- 356
+AG LEEA V++ M ++PN +I GS LAAC+ +AE V+ + + + GG
Sbjct: 376 RAGRLEEALNVLKNMPMKPNEVILGSLLAACRTQGNIGLAENVMNYLIEL----DSGGDS 431
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ ++Y KW+GA +VR+ M + ++K G S I
Sbjct: 432 NYVLLSNIYAAVGKWDGANKVRRRMKERGIQKKPGFSSI 470
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 119/278 (42%), Gaps = 67/278 (24%)
Query: 82 VTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISN 141
V+W T I Y KSG++ +A F +M RE
Sbjct: 57 VSWTTSIADYCKSGHLVKAASKFVQM----------------------------RE---- 84
Query: 142 EGLTPDQMTIGAVLSGCSHLGS-VGLLMGKSAHGFIVKNEWELNE-QIATILVDMYAKCG 199
+ P+ +T +LS C+H S + G + H + K ++N+ + T L+DMYAKCG
Sbjct: 85 AAIEPNHITFITLLSACAHYPSRSSISFGTAIHAHVRKLGLDINDVMVGTALIDMYAKCG 144
Query: 200 FLKY-------------------------------ALMVFELMEERNVISWTALICGSAH 228
++ AL VF+ + +N ISWTALI G
Sbjct: 145 RVESARLAFDQMGVRNLVSWNTMIDGYMRNGKFEDALQVFDGLPVKNAISWTALIGGFVK 204
Query: 229 RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQ 288
+ Y E+AL F MQ +GV P+ +T V+ AC + G + G +++ + D ++
Sbjct: 205 KDYHEEALECFREMQLSGVAPDYVTVIAVIAACANLGTLGLGLWVHRLVMTQ-DFRNNVK 263
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
++D++ + G ++ A +V M + ++ W S +
Sbjct: 264 VSNSLIDMYSRCGCIDLARQVFDRMP-QRTLVSWNSII 300
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 18/136 (13%)
Query: 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH----------TG 265
++SWT I G+ A S F M+ ++PN +TF +L+AC H T
Sbjct: 56 IVSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYPSRSSISFGTA 115
Query: 266 LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSF 325
+ RK I++ + ++D++ K G +E A M + N++ W +
Sbjct: 116 IHAHVRKLGLDIND-------VMVGTALIDMYAKCGRVESARLAFDQMGVR-NLVSWNTM 167
Query: 326 LAACKEHKQFDMAERV 341
+ + +F+ A +V
Sbjct: 168 IDGYMRNGKFEDALQV 183
>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Glycine max]
Length = 721
Score = 277 bits (709), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 149/398 (37%), Positives = 237/398 (59%), Gaps = 10/398 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L+ +M D+ + +L +C H NL+ +H I GF ++ TSL++
Sbjct: 202 LKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNM 261
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + AR+++D+LP ++ V M+ GY+K G V +AR F+RM +++ WSAMI
Sbjct: 262 YANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMI 321
Query: 120 AAYLNAGAYDP--GLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
+ Y A +Y P L+LF EM + PDQ+T+ +V+S C+++G+ L+ K H +
Sbjct: 322 SGY--AESYQPLEALQLFNEM-QRRRIVPDQITMLSVISACANVGA--LVQAKWIHTYAD 376
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
KN + I L+DMYAKCG L A VFE M +NVISW+++I A G ++ A++
Sbjct: 377 KNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIA 436
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LF M+ ++PN +TF GVL AC H GLV+EG+K+F + E+ + P+ +HYGCMVDL+
Sbjct: 437 LFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLY 496
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
+A L +A E+I TM PNVIIWGS ++AC+ H + ++ E + L + +P++DG +
Sbjct: 497 CRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLEL-EPDHDGAL 555
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L ++Y ++W+ VRKLM ++ V K + S I
Sbjct: 556 VVL-SNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRI 592
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/369 (26%), Positives = 157/369 (42%), Gaps = 65/369 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+ + R P D FS +LK+ + + L + +H K GF
Sbjct: 100 LSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGLEIHGLASKFGFF------------ 147
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ + +I Y+ G + +AR F++M R+V +W+ MI
Sbjct: 148 -----------------HADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMID 190
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y YD LKL+ EM G PD + + VLS C+H G+ L GK+ H FI N
Sbjct: 191 GYSQNAHYDHVLKLYEEM-KTSGTEPDAIILCTVLSACAHAGN--LSYGKAIHQFIKDNG 247
Query: 181 WELNEQIATILVDMYAKC-------------------------------GFLKYALMVFE 209
+ + I T LV+MYA C G ++ A +F+
Sbjct: 248 FRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFD 307
Query: 210 LMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
M E++++ W+A+I G A +AL LF MQ + P+++T V++AC + G + +
Sbjct: 308 RMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQ 367
Query: 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAAC 329
K+ ++ + ++D++ K G L +A EV M + NVI W S + A
Sbjct: 368 A-KWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRK-NVISWSSMINAF 425
Query: 330 KEHKQFDMA 338
H D A
Sbjct: 426 AMHGDADSA 434
>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera]
gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 277 bits (709), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 149/392 (38%), Positives = 225/392 (57%), Gaps = 6/392 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF +M +V D + +L +C NL+ +H I++ + ++ ++L+ Y
Sbjct: 210 LFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYA 269
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
S A LF+++ +N V M+ GYSK G + AR F +M +++ WSAMI+
Sbjct: 270 SCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISG 329
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y + + L LF EM S G+ PDQ+T+ +V++ C+HLG+ L K H F+ KN +
Sbjct: 330 YAESDSPQEALNLFNEMQS-LGIKPDQVTMLSVITACAHLGA--LDQAKWIHLFVDKNGF 386
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
I L++MYAKCG L+ A +F+ M +NVISWT +I A G + AL F
Sbjct: 387 GGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQ 446
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M+ ++PN +TF GVL AC H GLV+EGRK F + E+++ P+ HYGCMVDLFG+A
Sbjct: 447 MEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRAN 506
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L EA E++ M L PNVIIWGS +AAC+ H + ++ E K+ L + P++DG +
Sbjct: 507 LLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLEL-DPDHDGA-HVFL 564
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
++Y +WE +VRKLM ++ + K RG S
Sbjct: 565 SNIYAKARRWEDVGQVRKLMKHKGISKERGCS 596
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 104/374 (27%), Positives = 165/374 (44%), Gaps = 68/374 (18%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
++ +M Q + D FS +LK+ + +L +H KLGF S +V T L+ Y
Sbjct: 109 VYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYA 168
Query: 63 VTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
AR +FD++ R+ VTW+ MI GY +SG
Sbjct: 169 ACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSG-------------------------- 202
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
++ L LF EM N + PD+M + VLS C G+ L GK H FI++N
Sbjct: 203 -----LFNDALLLFEEM-KNYNVEPDEMMLSTVLSACGRAGN--LSYGKMIHDFIMENNI 254
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVIS----------------------- 218
++ + + LV MYA CG + AL +FE M +N+++
Sbjct: 255 VVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQ 314
Query: 219 --------WTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
W+A+I G A ++AL+LF MQ+ G+KP+++T V+TAC H G +D+
Sbjct: 315 MVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQA 374
Query: 271 RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330
K+ + ++ + +++++ K G LE A + M NVI W ++A
Sbjct: 375 -KWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMP-RKNVISWTCMISAFA 432
Query: 331 EHKQFDMAERVIKQ 344
H A R Q
Sbjct: 433 MHGDAGSALRFFHQ 446
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 142/325 (43%), Gaps = 48/325 (14%)
Query: 30 NNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS------FGFARKLFDELPERNAVT 83
+LT + +H+ IL+ S + +TSLL + V++S +A +F+ +P+
Sbjct: 34 TSLTHLKQVHAQILR----SKLDRSTSLLVKLVISSCALSSSLDYALSVFNLIPKPETHL 89
Query: 84 WNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEG 143
N ++ S+S + +ERM +G
Sbjct: 90 CNRFLRELSRSEEPEKTLLVYERM--------------------------------RTQG 117
Query: 144 LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKY 203
L D+ + +L S + S L+ G HG K ++ + + T LV MYA CG +
Sbjct: 118 LAVDRFSFPPLLKALSRVKS--LVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAE 175
Query: 204 ALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263
A ++F+ M R+V++W+ +I G G DAL LFE M+ V+P+EM + VL+AC
Sbjct: 176 ARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGR 235
Query: 264 TGLVDEGRKYFKMIDE-EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
G + G+ I E ++P +Q +V ++ G ++ A + M N++
Sbjct: 236 AGNLSYGKMIHDFIMENNIVVDPHLQ--SALVTMYASCGSMDLALNLFEKMT-PKNLVAS 292
Query: 323 GSFLAACKEHKQFDMAERVIKQALR 347
+ + + Q + A V Q ++
Sbjct: 293 TAMVTGYSKLGQIENARSVFNQMVK 317
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 109/256 (42%), Gaps = 45/256 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF++M + D ++L ++ +C H L +H + K GF + + +L+
Sbjct: 340 LNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEM 399
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA----SW 115
Y S AR++FD++P +N ++W MI ++ G+ A FF +M N+ ++
Sbjct: 400 YAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITF 459
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
++ A +AG + G K+F MI+ +TP + G
Sbjct: 460 VGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGC---------------------- 497
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSED 234
+VD++ + L+ AL + E M NVI W +L+ +A R + E
Sbjct: 498 ---------------MVDLFGRANLLREALELVEAMPLAPNVIIWGSLM--AACRVHGEI 540
Query: 235 ALSLFEMMQATGVKPN 250
L F + + P+
Sbjct: 541 ELGEFAAKRLLELDPD 556
>gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Cucumis sativus]
Length = 525
Score = 277 bits (709), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 143/396 (36%), Positives = 236/396 (59%), Gaps = 9/396 (2%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVI--HHLHSHILKLGF-ISHVYVATSLLHE 60
F++M V + + + +L +C F + + LH + K G HV V T+L+
Sbjct: 80 FTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLHGYACKYGLDTGHVMVGTALIDM 139
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y G ARK+F L +N+V+WNTM+ G+ ++G + A F+ MP R+ SW+A+I
Sbjct: 140 YSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALI 199
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
L G + L+ F +M G+ D ++I AVL+ C+ LG+ L +G H F++
Sbjct: 200 NGLLKHGYSEQALECFHQM-QRSGVAADYVSIIAVLAACADLGA--LTLGLWVHRFVMPQ 256
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
E++ N +I+ L+DMY++CG +++A VF M +R ++SW ++I G A G+++++L F
Sbjct: 257 EFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFF 316
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MQ G KP+ +++TG LTAC H GLV++G + F + + + PRI+HYGC+VDL+G+
Sbjct: 317 YAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYGR 376
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG LE+A +I M ++PN ++ GS LAAC+ H ++AER++K ++ PE D +
Sbjct: 377 AGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMKHLFKL-DPEGD-AYYV 434
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y KW+GA VR+ M + V+K G S +
Sbjct: 435 LLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSV 470
>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 277 bits (709), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 148/415 (35%), Positives = 236/415 (56%), Gaps = 36/415 (8%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV------------ 62
D+++ + K+C + + + + H+L LGF S ++V+ +++H V
Sbjct: 150 DNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMF 209
Query: 63 ------------------VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFF 104
+ ARKLFD + + V+W TM+ GY++SG + A F
Sbjct: 210 DKSCVRDLVSWNSMINGYCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLF 269
Query: 105 ERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV 164
+ MP ++V W+AMI Y++A L LF EM + + PD++T+ + LS CS LG++
Sbjct: 270 DEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQA-MNINPDEVTMVSCLSACSQLGAL 328
Query: 165 GLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALIC 224
+ G H +I K+E LN + T L+DMYAKCG + A+ VF+ + RN ++WTA+I
Sbjct: 329 DV--GIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIIS 386
Query: 225 GSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLE 284
G A G + A++ F M V P+E+TF G+L+AC H GLV+EGRKYF + +++L
Sbjct: 387 GLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLS 446
Query: 285 PRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
P+++HY CMVDL G+AG LEEA E+I++M +E + ++WG+ AC+ H M ER +
Sbjct: 447 PKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASK 506
Query: 345 ALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGS-SVISSL 398
L+M +D G++ L+ ++Y E W+ A + RKLM + V K S S++S L
Sbjct: 507 LLQM--DPHDSGIYVLLANMYGEAEMWKEAGKARKLMRQRGVEKTPDSWSLLSVL 559
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/297 (21%), Positives = 120/297 (40%), Gaps = 66/297 (22%)
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155
+ C F R P N SW+ I +L++ + L++ ++ +G PD T +
Sbjct: 101 DYCTNILFNTRNP--NTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLF 158
Query: 156 SGCSHLGSVGL---LMGKSAH-GFIVKNEWELNEQIATILVD---------MYAK----- 197
C+ L + + ++G H GF ++ ++ + +LV M+ K
Sbjct: 159 KACARLSLIRMGSEILGHVLHLGF--DSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRD 216
Query: 198 -----------CGFLKYALMVFELMEERNVISWTALICGSAHRGY--------------- 231
CG L+ A +F+ M + ++SWT ++ G A G
Sbjct: 217 LVSWNSMINGYCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKD 276
Query: 232 ----------------SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275
++AL+LF MQA + P+E+T L+AC G +D G
Sbjct: 277 VVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHH 336
Query: 276 MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
I E+++L + ++D++ K G + +A +V + + N + W + ++ H
Sbjct: 337 YI-EKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGR-NSLTWTAIISGLALH 391
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 112/263 (42%), Gaps = 44/263 (16%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF++M ++ D +++ L +C+ L V +H +I K +V + T+L+
Sbjct: 297 LALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDM 356
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNV----ASW 115
Y A ++F ELP RN++TW +I G + GN A +F M +V ++
Sbjct: 357 YAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTF 416
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTP----------------------------- 146
+++A + G + G K F +M S L+P
Sbjct: 417 LGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMP 476
Query: 147 ---DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKY 203
D + GA+ C G+V LMG+ A +++ + + I +L +MY + K
Sbjct: 477 IEADAVVWGALFFACRIHGNV--LMGERAASKLLQMD-PHDSGIYVLLANMYGEAEMWKE 533
Query: 204 ALMVFELMEERNV----ISWTAL 222
A +LM +R V SW+ L
Sbjct: 534 AGKARKLMRQRGVEKTPDSWSLL 556
>gi|357150199|ref|XP_003575376.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Brachypodium distachyon]
Length = 523
Score = 277 bits (709), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 140/384 (36%), Positives = 231/384 (60%), Gaps = 10/384 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF +M R+ P+ + + ++ + ++ +HSH K GF ++ + TSLL
Sbjct: 97 LALFLRMLRRGRPAPNQFVYPLVLRAACAIGVQLVRSIHSHACKSGFHAYDVIRTSLLDG 156
Query: 61 YVVTSFGF---ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
Y + +G ARKLFD L ERN ++W ++ GY+++G + +A F+RMP R+VA+W+A
Sbjct: 157 Y--SRYGMMLDARKLFDGLTERNVISWTALVSGYARAGKIGDAIVLFDRMPERDVAAWNA 214
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MI G + + + M+ +EG + T+ VLS C HLG L +GK HG+
Sbjct: 215 MITGCTQNGLFVEAVGICSRMV-DEGFQLNGTTVSCVLSACGHLGM--LKIGKVVHGYAW 271
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
++ + L+DMY KCG LK A +F+ +R++ +W +LI A G+S+ A++
Sbjct: 272 RSCVGFGSSVVNGLIDMYGKCGNLKEARWMFDEFSDRSLTTWNSLINCLALHGHSKSAIA 331
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
+F+ M+ G++P+ +TF G+L AC H G VDEG YFK++ +E +EP I+HYGC+VDL
Sbjct: 332 VFDEMRDEGIEPDVVTFVGLLNACTHGGFVDEGLTYFKLMCDELRIEPEIEHYGCIVDLL 391
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
G+AG E+A VI M+++P+ +IWGS L AC+ H+Q ++AE +++ L++ P N+
Sbjct: 392 GRAGRFEDAMNVINDMKVQPDEVIWGSLLNACRTHRQLELAEFSVRKLLQL-NP-NNANY 449
Query: 358 FTLICDLYTMNEKWEGAERVRKLM 381
++ +LY+ WE ++RKLM
Sbjct: 450 VVMLANLYSEGGSWEEVTKIRKLM 473
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 102/243 (41%), Gaps = 37/243 (15%)
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
++ +AR+LFD P N ++ M+ + A+
Sbjct: 55 LSCLPYARRLFDSTPHPNVFLYSAMLS--------------------------AYAAASP 88
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
A +D L LF M+ P+Q VL ++G+ + +S H K+ +
Sbjct: 89 AQAYGHD-ALALFLRMLRRGRPAPNQFVYPLVLRAAC---AIGVQLVRSIHSHACKSGFH 144
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
+ I T L+D Y++ G + A +F+ + ERNVISWTAL+ G A G DA+ LF+ M
Sbjct: 145 AYDVIRTSLLDGYSRYGMMLDARKLFDGLTERNVISWTALVSGYARAGKIGDAIVLFDRM 204
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYF-KMIDEEYDLEPRIQHYGCMVDLFGKAG 301
V + ++T C GL E +M+DE + L C++ G G
Sbjct: 205 PERDVA----AWNAMITGCTQNGLFVEAVGICSRMVDEGFQLNGTT--VSCVLSACGHLG 258
Query: 302 FLE 304
L+
Sbjct: 259 MLK 261
>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 775
Score = 277 bits (709), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 150/399 (37%), Positives = 240/399 (60%), Gaps = 11/399 (2%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF +M V D ++ L +C+ N+ + +H +K+G +V + +L+H Y
Sbjct: 257 LFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLY- 315
Query: 63 VTSFG---FARKLFDELPER-NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
+S G AR++FD+ E + ++WN+MI GY + G++ +A F MP ++V SWSAM
Sbjct: 316 -SSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAM 374
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I+ Y + L LF+EM G+ PD+ + + +S C+HL ++ L GK H +I +
Sbjct: 375 ISGYAQHECFSEALALFQEM-QLHGVRPDETALVSAISACTHLATLDL--GKWIHAYISR 431
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
N+ ++N ++T L+DMY KCG ++ AL VF MEE+ V +W A+I G A G E +L++
Sbjct: 432 NKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNM 491
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F M+ TG PNE+TF GVL AC H GLV++GR YF + E+ +E I+HYGCMVDL G
Sbjct: 492 FADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLG 551
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG L+EA E+I +M + P+V WG+ L AC++H+ +M ER+ ++ +++ +P++D G
Sbjct: 552 RAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQL-QPDHD-GFH 609
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
L+ ++Y W +R +M V K G S+I +
Sbjct: 610 VLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEA 648
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 107/378 (28%), Positives = 169/378 (44%), Gaps = 71/378 (18%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT-SFGFARKLF 73
DS++ +L+ C + LH+H + GF VYV +L++ Y V S G AR++F
Sbjct: 104 DSYTYPILLQCCAARVSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVF 163
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRN---------------------- 111
+E P + V+WNT++ GY ++G V EA FE MP RN
Sbjct: 164 EESPVLDLVSWNTLLAGYVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARR 223
Query: 112 -----------VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSH 160
+ SWSAM++ Y + L LF EM G+ D++ + + LS CS
Sbjct: 224 IFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEM-KGSGVAVDEVVVVSALSACSR 282
Query: 161 LGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA------------------------ 196
+ +V MG+ HG VK E + L+ +Y+
Sbjct: 283 VLNVE--MGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISW 340
Query: 197 --------KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
+CG ++ A M+F M E++V+SW+A+I G A +AL+LF+ MQ GV+
Sbjct: 341 NSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVR 400
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+E ++AC H +D G K+ L+ + ++D++ K G +E A E
Sbjct: 401 PDETALVSAISACTHLATLDLG-KWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALE 459
Query: 309 VIRTMRLEPNVIIWGSFL 326
V M E V W + +
Sbjct: 460 VFYAME-EKGVSTWNAVI 476
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 97/227 (42%), Gaps = 39/227 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF +M V D +++ + +CTH L LG H Y++ + L
Sbjct: 388 LALFQEMQLHGVRPDETALVSAISACTHLAT-----------LDLGKWIHAYISRNKLQV 436
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
V+ S T+I Y K G V A + F M + V++W+A+I
Sbjct: 437 NVILS-------------------TTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVIL 477
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF---IV 177
G+ + L +F +M G P+++T VL C H+G L+ H F I
Sbjct: 478 GLAMNGSVEQSLNMFADM-KKTGTVPNEITFMGVLGACRHMG----LVNDGRHYFNSMIH 532
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALI 223
+++ E N + +VD+ + G LK A + + M +V +W AL+
Sbjct: 533 EHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALL 579
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 118/301 (39%), Gaps = 50/301 (16%)
Query: 18 SILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL----HEYVVTSFGFARKLF 73
S+L K HF L S + G I+ Y A+ L+ H + F ++ ++F
Sbjct: 8 SLLQSCKCPRHFKQLL------SQTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRIF 61
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
+ L N TWNT+++ A + + P + + + +A++
Sbjct: 62 NHLRNPNTFTWNTIMR----------AHLYLQNSPHQALLHYKLFLASHAK--------- 102
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
PD T +L C+ V G+ H V + ++ + + L++
Sbjct: 103 ------------PDSYTYPILLQCCA--ARVSEFEGRQLHAHAVSSGFDGDVYVRNTLMN 148
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
+YA CG + A VFE +++SW L+ G G E+A +FE M + N +
Sbjct: 149 LYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAERVFEGMP----ERNTIA 204
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
++ G V++ R+ F + E + + MV + + EEA + M
Sbjct: 205 SNSMIALFGRKGCVEKARRIFNGVRGR---ERDMVSWSAMVSCYEQNEMGEEALVLFVEM 261
Query: 314 R 314
+
Sbjct: 262 K 262
>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Vitis vinifera]
Length = 512
Score = 277 bits (709), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 142/395 (35%), Positives = 231/395 (58%), Gaps = 6/395 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L++QM Q + S + +C ++ LH+H +K GF V+ T+L+ Y
Sbjct: 69 LYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGCDVFALTALVDMYA 128
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+ ARK FDE+ R+ TWN+MI GY++ G++ A + F MP RNV SW+AMI+
Sbjct: 129 KLGLLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISG 188
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y G Y L +F M + P+++T+ +VL C++LG+ L +G+ + N +
Sbjct: 189 YAQNGQYAKALSMFLMMEEETEMRPNEVTLASVLPACANLGA--LEVGERIEVYARGNGY 246
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSEDALSLFE 240
N ++ L++MYA+CG + A VFE ++ RN+ SW ++I G A G ++A+ LF
Sbjct: 247 FKNLYVSNALLEMYARCGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFY 306
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M G P+++TF GVL AC H G+V EG+ +F+ ++ ++ + P+++HYGCMVDL G+A
Sbjct: 307 KMLREGAAPDDVTFVGVLLACTHGGMVVEGQHFFESMERDFSIAPKLEHYGCMVDLLGRA 366
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G L EA+++I M +EP+ ++WG+ L AC H ++AE+ AL ++P N G + +
Sbjct: 367 GELREAHDLILRMPMEPDSVVWGTLLGACSFHGHVELAEKA-AGALFELEPSNPGN-YVI 424
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y +W+G R+RKLM + KA G S I
Sbjct: 425 LSNIYATAGRWDGVARLRKLMKGGKITKAAGYSFI 459
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 88/334 (26%), Positives = 152/334 (45%), Gaps = 34/334 (10%)
Query: 35 IHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKS 94
+ + ++ L+ G + SLL + S +A KLFD +P+ +N +I+ YS
Sbjct: 4 LKQIQAYTLRNGIEHTKQLIVSLLQ---IPSIPYAHKLFDFIPKPTVFLYNKLIQAYSSH 60
Query: 95 GNVCEARDFFERMPLR----NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMT 150
G + + +M L+ N S++ + +A + ++ G L + + G D
Sbjct: 61 GPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTHFVKS-GFGCDVFA 119
Query: 151 IGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFEL 210
+ A++ + LG + L K V++ N IA YA+CG L+ AL +F L
Sbjct: 120 LTALVDMYAKLGLLSLAR-KQFDEMTVRDVPTWNSMIAG-----YARCGDLEGALELFRL 173
Query: 211 MEERNVISWTALICGSAHRGYSEDALSLFEMM-QATGVKPNEMTFTGVLTACVHTGLVDE 269
M RNV SWTA+I G A G ALS+F MM + T ++PNE+T VL AC + G ++
Sbjct: 174 MPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASVLPACANLGALEV 233
Query: 270 GRK---------YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVI 320
G + YFK + +++++ + G +++A+ V + N+
Sbjct: 234 GERIEVYARGNGYFK----------NLYVSNALLEMYARCGRIDKAWGVFEEIDGRRNLC 283
Query: 321 IWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
W S + H + D A + + LR +D
Sbjct: 284 SWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDD 317
>gi|225450551|ref|XP_002277430.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 500
Score = 277 bits (709), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 146/395 (36%), Positives = 236/395 (59%), Gaps = 7/395 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L M R P D+++ +LK+C+ +L LH LK G HV+V SL+H Y
Sbjct: 75 LHRHMLRHGPPPDTYTFPFLLKACSALAHLPKGQELHCQALKFGLGGHVFVENSLIHLYG 134
Query: 63 VTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
S AR++FD + R+ +W T++ Y+ S +V AR F+ MP R+V S+SAMIAA
Sbjct: 135 SNSGMDSARRVFDGMGYRDIASWTTLLACYANSCSVKAARKVFDEMPERSVISYSAMIAA 194
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ + L LFRE+ S + + P + +VL C++LG+ L +G+ + ++ +++
Sbjct: 195 YVRGNRFREALDLFRELFSVK-IEPSDSCVMSVLCACANLGA--LDVGRWVYSYVCQSKG 251
Query: 182 E-LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ ++ +IAT L+DM+ KCG +++AL+VFE +E++V WTA++ G A G E + FE
Sbjct: 252 DYVDSRIATALIDMFFKCGSIEHALLVFEGAKEKHVGEWTAMLSGLAMHGLGEQLIEAFE 311
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M +GVKPN +TF +L+ C H+GLV+EG YF ++ ++ +EP ++H+GC+VDL G+A
Sbjct: 312 KMVDSGVKPNGVTFVALLSGCSHSGLVNEGLYYFDRMESDFGVEPTVEHFGCVVDLLGRA 371
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G +++A ++I M EPN IWGS L AC+ +K ++ E + Q L +P N G ++
Sbjct: 372 GLIDQAMQLISEMPFEPNAAIWGSLLNACRVYKNVEIGE-LAAQWLIKDEPWN-GALYMT 429
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ LY +W+ E+V+ M RK G S+I
Sbjct: 430 LLSLYREAGRWDEVEKVKLKMKEVGCRKGPGCSLI 464
>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Cucumis sativus]
Length = 782
Score = 277 bits (708), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 148/400 (37%), Positives = 238/400 (59%), Gaps = 10/400 (2%)
Query: 1 MQLFSQM-HRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+ +FS+M + S+ D+F++ IL +C + L + +H++IL+ + V +L+
Sbjct: 259 LAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALIS 318
Query: 60 EYVVTS-FGFARKLF--DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
Y + AR + + N + + +++ GY+K GNV AR+ F ++ R+V +W+
Sbjct: 319 MYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWT 378
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
AMI Y+ G ++ L+LFR M+ NEG P+ T+ A+LS S L L GK H
Sbjct: 379 AMIVGYVQNGLWNDALELFRLMV-NEGPEPNSYTLAAMLSVSSSL--TILEHGKQIHASA 435
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSEDA 235
+K + L+ MYAK G + A VF+L ++ ++SWT++I A G ++A
Sbjct: 436 IKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEA 495
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
++LFE M + G+KP+ +T+ GVL+AC H GLV++GRKY+ M+ E +++EP + HY CM+D
Sbjct: 496 INLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMID 555
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
L+G+AG L+EAY I +M +EP+ I WGS LA+CK HK D+A +V + L ++ P N G
Sbjct: 556 LYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLA-KVAAERLLLIDPGNSG 614
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L ++Y+ KWE A + RKLM ++ VRK +G S I
Sbjct: 615 AYLAL-ANVYSACGKWENAAQTRKLMKDRGVRKEKGISWI 653
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 103/384 (26%), Positives = 184/384 (47%), Gaps = 43/384 (11%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+F++M + VP F++ ++L SC L + +HS ++KLG S V VATSLL+ Y
Sbjct: 129 MFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYA 188
Query: 63 VTSFG-FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
A+ +FD + +N TWN +I Y +SG A FE+MP R++ SW++MI+
Sbjct: 189 KCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISG 248
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y G L +F +M++ L PD T+ ++LS C++L + + GK H +I++ E
Sbjct: 249 YSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNI--GKQIHAYILRAET 306
Query: 182 ELNEQIATILVDMYAKCGFLKYALM---------------------------------VF 208
E + + L+ MYAK G ++ A + +F
Sbjct: 307 ETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIF 366
Query: 209 ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
+ +R+V++WTA+I G G DAL LF +M G +PN T +L+ +++
Sbjct: 367 NKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILE 426
Query: 269 EGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
G++ + I P + + ++ ++ K G + A V + ++ W S +
Sbjct: 427 HGKQIHASAIKAGESSTPSVTN--ALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIM 484
Query: 328 ACKEH----KQFDMAERVIKQALR 347
A +H + ++ ER++ ++
Sbjct: 485 ALAQHGLGKEAINLFERMLSVGMK 508
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 116/412 (28%), Positives = 195/412 (47%), Gaps = 55/412 (13%)
Query: 13 PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT-SFGFARK 71
P+ S HIL++ + +H I+K G VY+ +L+ Y T S FA
Sbjct: 7 PTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHH 66
Query: 72 LFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPG 131
+FDE+P ++ +WNT+I GY+K GN +R MP + SW+A+I Y G +D
Sbjct: 67 VFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNA 126
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
+ +F +MIS E + P Q T+ VLS C+ + L +G+ H F+VK +AT L
Sbjct: 127 IWMFAKMIS-ERVPPSQFTVSNVLSSCA--ANQTLDIGRKIHSFVVKLGLGSCVPVATSL 183
Query: 192 VDMYAKCGFLKYALMV-------------------------------FELMEERNVISWT 220
++MYAKCG A +V FE M +R+++SW
Sbjct: 184 LNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWN 243
Query: 221 ALICGSAHRGYSEDALSLF-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE 279
++I G + +GY+ +AL++F +M+ +KP+ T +L+AC + ++ G++
Sbjct: 244 SMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQI-----H 298
Query: 280 EYDLEPRIQHYG----CMVDLFGKAGFLEEAYEVI---RTMRLEPNVIIWGSFLAACKEH 332
Y L + G ++ ++ K+G +E A ++ RT L N+I + S L +
Sbjct: 299 AYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNL--NIIAFTSLLDGYTKL 356
Query: 333 KQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384
A + + LR + D +T + Y N W A + +LM+N+
Sbjct: 357 GNVKPAREIFNK-LR----DRDVVAWTAMIVGYVQNGLWNDALELFRLMVNE 403
>gi|224059226|ref|XP_002299777.1| predicted protein [Populus trichocarpa]
gi|222847035|gb|EEE84582.1| predicted protein [Populus trichocarpa]
Length = 439
Score = 277 bits (708), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 141/360 (39%), Positives = 227/360 (63%), Gaps = 7/360 (1%)
Query: 38 LHSHILKLGF-ISHVYVATSLLHEYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSG 95
LH++ KLG ++ V T+L+ Y +R FDEL +N+ +WNTMI G+ ++G
Sbjct: 34 LHAYTRKLGLDTCNLMVGTALVDMYAKCGHVELSRLCFDELKVKNSFSWNTMIDGFVRNG 93
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155
+ EA + F+ MP R V SW+ +I ++ G ++ L+ FR+M ++ + PD++TI VL
Sbjct: 94 KIREAIEVFDEMPERGVISWTVLINGFVKMGLFEEALEWFRKMQVSK-VEPDRVTIVTVL 152
Query: 156 SGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERN 215
S C++LG++GL G H + +K N +I L+D+Y++CG ++ A VFE M ER
Sbjct: 153 SACANLGALGL--GLWVHRYALKKGLRDNVKICNSLIDLYSRCGAIELARQVFEKMGERT 210
Query: 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275
++SW ++I G A G++E+AL F++MQ G KPN+++FTG LTAC HTGLVDEG KYF
Sbjct: 211 LVSWNSIIGGLAANGFTEEALEHFDLMQKQGFKPNDVSFTGALTACSHTGLVDEGLKYFD 270
Query: 276 MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQF 335
+++ + + PRI+HYGC+VDL+ +AG LE+A V++ M ++PN ++ GS LAAC+
Sbjct: 271 IMERVHKISPRIEHYGCIVDLYSRAGRLEDAMSVVQNMPMKPNEVVVGSLLAACRTRGDV 330
Query: 336 DMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++AER++ + + P D + L+ ++Y +W+GA + R M ++K G S I
Sbjct: 331 ELAERLMNYLVHL-DPGADSN-YVLLSNIYAAVGRWDGACKQRMTMKALGIQKKPGFSSI 388
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 126/310 (40%), Gaps = 79/310 (25%)
Query: 144 LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE-LNEQIATILVDMYAKCGF-- 200
+ P+ +T +LSGC+ L S G +G H + K + N + T LVDMYAKCG
Sbjct: 6 IDPNHVTFITLLSGCADLPSQGNSLGPLLHAYTRKLGLDTCNLMVGTALVDMYAKCGHVE 65
Query: 201 -----------------------------LKYALMVFELMEERNVISWTALICGSAHRGY 231
++ A+ VF+ M ER VISWT LI G G
Sbjct: 66 LSRLCFDELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVISWTVLINGFVKMGL 125
Query: 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG------------RKYFKMIDE 279
E+AL F MQ + V+P+ +T VL+AC + G + G R K+ +
Sbjct: 126 FEEALEWFRKMQVSKVEPDRVTIVTVLSACANLGALGLGLWVHRYALKKGLRDNVKICNS 185
Query: 280 EYDLEPR------------------IQHYGCMVDLFGKAGFLEEA---YEVIRTMRLEPN 318
DL R + + ++ GF EEA +++++ +PN
Sbjct: 186 LIDLYSRCGAIELARQVFEKMGERTLVSWNSIIGGLAANGFTEEALEHFDLMQKQGFKPN 245
Query: 319 VIIWGSFLAACKEH-------KQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKW 371
+ + L AC K FD+ ERV K + R+ + I DLY+ +
Sbjct: 246 DVSFTGALTACSHTGLVDEGLKYFDIMERVHKISPRIEH-------YGCIVDLYSRAGRL 298
Query: 372 EGAERVRKLM 381
E A V + M
Sbjct: 299 EDAMSVVQNM 308
>gi|356559933|ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Glycine max]
Length = 512
Score = 277 bits (708), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 140/395 (35%), Positives = 233/395 (58%), Gaps = 6/395 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+SQM S + + + +CT ++ ++ LH+H +K GF ++ AT+LL Y
Sbjct: 70 LYSQMLLHSFLPNQHTFNFLFSACTSLSSPSLGQMLHTHFIKSGFEPDLFAATALLDMYT 129
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
V + ARKLFD++P R TWN M+ G+++ G++ A + F MP RNV SW+ MI+
Sbjct: 130 KVGTLELARKLFDQMPVRGVPTWNAMMAGHARFGDMDVALELFRLMPSRNVVSWTTMISG 189
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y + Y L LF M +G+ P+ +T+ ++ ++LG+ L +G+ + KN +
Sbjct: 190 YSRSKKYGEALGLFLRMEQEKGMMPNAVTLASIFPAFANLGA--LEIGQRVEAYARKNGF 247
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVF-ELMEERNVISWTALICGSAHRGYSEDALSLFE 240
N ++ +++MYAKCG + A VF E+ RN+ SW ++I G A G L L++
Sbjct: 248 FKNLYVSNAVLEMYAKCGKIDVAWKVFNEIGSLRNLCSWNSMIMGLAVHGECCKTLKLYD 307
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M G P+++TF G+L AC H G+V++GR FK + +++ P+++HYGCMVDL G+A
Sbjct: 308 QMLGEGTSPDDVTFVGLLLACTHGGMVEKGRHIFKSMTTSFNIIPKLEHYGCMVDLLGRA 367
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G L EAYEVI+ M ++P+ +IWG+ L AC H ++AE + ++L ++P N G + +
Sbjct: 368 GQLREAYEVIQRMPMKPDSVIWGALLGACSFHDNVELAE-IAAESLFALEPWNPGN-YVI 425
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y +W+G ++RK+M + K+ G S I
Sbjct: 426 LSNIYASAGQWDGVAKLRKVMKGSKITKSAGHSFI 460
Score = 41.2 bits (95), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 84/206 (40%), Gaps = 18/206 (8%)
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICG-SAH 228
K HG+ ++N + + IL++ + L YA V + + + LI S+H
Sbjct: 5 KQIHGYTLRNGIDQTK----ILIEKLLEIPNLHYAHKVLHHSPKPTLFLYNKLIQAYSSH 60
Query: 229 RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY---DLEP 285
+ SL+ M PN+ TF + +AC G +M+ + EP
Sbjct: 61 PQHQHQCFSLYSQMLLHSFLPNQHTFNFLFSACTSLSSPSLG----QMLHTHFIKSGFEP 116
Query: 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQA 345
+ ++D++ K G LE A ++ M + V W + +A D+A + +
Sbjct: 117 DLFAATALLDMYTKVGTLELARKLFDQMPVR-GVPTWNAMMAGHARFGDMDVALELFR-- 173
Query: 346 LRMVKPENDGGVFTLICDLYTMNEKW 371
+ P + +T + Y+ ++K+
Sbjct: 174 ---LMPSRNVVSWTTMISGYSRSKKY 196
>gi|357503973|ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355497290|gb|AES78493.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 541
Score = 277 bits (708), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 144/403 (35%), Positives = 240/403 (59%), Gaps = 14/403 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFN-NLTVIHHLHSHILKLGFISHVYVATSLLH 59
+ L+ QM + + ++ + ++K C+ TV +H+H+LK GF++ V+V SL+
Sbjct: 113 LMLYKQMLNKGIVPNNLTFPFLVKGCSRLQYGGTVGEVIHAHVLKFGFLNDVFVGNSLIS 172
Query: 60 EYVVTSFGF---ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
++ +FG ARK+FDE+ R+ V+WN+M+ GY ++G V A + F +M RN+ +W+
Sbjct: 173 LFM--NFGLSKNARKVFDEMFVRDVVSWNSMVVGYLRNGEVEMALNLFRKMNGRNIITWN 230
Query: 117 AMIAAYLNAGAYDPGLKLFREM---ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH 173
++I + AG L++F EM ++ + PD++TI +VLS C+ LGS+ GK H
Sbjct: 231 SIITGLVQAGHAKESLEIFHEMQFLSGDDVVKPDKITIASVLSACALLGSID--HGKWVH 288
Query: 174 GFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE 233
++ KN+ E + I T LV+MY KCG ++ A+ +F M E++ +WTA+I A G+ +
Sbjct: 289 AYLRKNDIECDVVIGTALVNMYGKCGDVQQAIEIFNDMPEKDASAWTAMISVFALHGFGK 348
Query: 234 DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293
A F M+ GVKPN +TF G+L+AC H+GLV++GR F ++ Y +EP+I HY CM
Sbjct: 349 KAFDCFLEMEKAGVKPNHVTFVGLLSACSHSGLVEQGRCCFDVMKRVYSIEPQIYHYACM 408
Query: 294 VDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353
VD+ +A +EA +IR+M ++P+V +WG+ L C+ H + E+V + + +P N
Sbjct: 409 VDILSRARLFDEALFLIRSMPMKPDVYVWGALLGGCQMHGNIKLGEKVAHYLIDL-EPHN 467
Query: 354 DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVR-KARGSSVI 395
L CD+Y K++ A+R+R M + + K G S+I
Sbjct: 468 HAFYINL-CDIYVKAGKYDAAKRIRNSMKERGIETKIPGCSII 509
>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 809
Score = 277 bits (708), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 149/398 (37%), Positives = 230/398 (57%), Gaps = 6/398 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++ F MH+ V D + L +C + + + +HS LK+G S++ + +L++
Sbjct: 226 IRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYM 285
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y ARKLFDE + ++WN+MI GY K V A+ F+ MP ++V SWS+MI
Sbjct: 286 YSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMI 345
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y +D L LF+EM G PD+ T+ +V+S C+ L + L GK H +I +N
Sbjct: 346 SGYAQNDLFDETLALFQEM-QMSGFKPDETTLVSVISACARLAA--LEQGKWVHAYIKRN 402
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+N + T L+DMY KCG ++ AL VF M E+ + +W ALI G A G E +L +F
Sbjct: 403 GLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMF 462
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M+ V PNE+TF GVL AC H GLVDEG+ +F + ++ ++P ++HYGCMVDL G+
Sbjct: 463 SNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGR 522
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG L+EA E++ M + P+V WG+ L ACK+H +M RV ++ + + +P++D G
Sbjct: 523 AGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIEL-QPDHD-GFHV 580
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
L+ ++Y KW+ +R +M V K G S+I +
Sbjct: 581 LLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEA 618
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 99/387 (25%), Positives = 181/387 (46%), Gaps = 68/387 (17%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ M + +D+++ ++++C+ + +H+H+LKLGF S VYV +L++ +
Sbjct: 65 LYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFS 124
Query: 63 VTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNV--------- 112
V S A ++F+E ++V+WN+++ GY + GNV EA+ + +MP R++
Sbjct: 125 VCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVL 184
Query: 113 ----------------------ASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMT 150
+WSA+IA + Y+ ++ F M G+ D++
Sbjct: 185 FGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGM-HKIGVMVDEVV 243
Query: 151 IGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC------------ 198
+ LS C++L V MGK H +K E + L+ MY+KC
Sbjct: 244 AVSALSACANLLVVN--MGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDE 301
Query: 199 --------------GFLKYALM-----VFELMEERNVISWTALICGSAHRGYSEDALSLF 239
G+LK L+ +F+ M E++V+SW+++I G A ++ L+LF
Sbjct: 302 AYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALF 361
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+ MQ +G KP+E T V++AC +++G+ I L + ++D++ K
Sbjct: 362 QEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRN-GLTINVILGTTLIDMYMK 420
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFL 326
G +E A EV M +E + W + +
Sbjct: 421 CGCVETALEVFYGM-IEKGISTWNALI 446
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/241 (20%), Positives = 92/241 (38%), Gaps = 44/241 (18%)
Query: 100 ARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCS 159
R F + N W+ MI AY+ + L++ M+SN L D T ++ CS
Sbjct: 31 TRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNY-LGADNYTYPLLIQACS 89
Query: 160 HLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISW 219
S K H ++K ++ + + L++ ++ C + A VF + +SW
Sbjct: 90 IRRSE--WEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSW 147
Query: 220 TALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE 279
+++ G G E+A ++ M
Sbjct: 148 NSILAGYIEIGNVEEAKHIYHQMP------------------------------------ 171
Query: 280 EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAE 339
E I M+ LFG G + EA ++ M LE +++ W + +A ++++ ++ A
Sbjct: 172 ----ERSIIASNSMIVLFGMRGLVVEACKLFDEM-LEKDMVTWSALIACFQQNEMYEEAI 226
Query: 340 R 340
R
Sbjct: 227 R 227
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 277 bits (708), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 141/397 (35%), Positives = 233/397 (58%), Gaps = 6/397 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF +M + V ++ +++ ++ +C NLT+ + +I + + ++ V + +
Sbjct: 328 LDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDM 387
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
+V AR LFD + +R+ V+W T+I GY+K ARD F+ MP +++ +W+ +I
Sbjct: 388 FVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLI 447
Query: 120 AAYLNAGAYDPGLKLFREM-ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
+ Y +G L +FRE+ ++ G PDQ+T+ + LS C+ LG++ + G+ HG+I K
Sbjct: 448 SGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDI--GEWIHGYIKK 505
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+LN +AT L+DMY+K G ++ A+ VF + ++V W+A+I G A G E A+ L
Sbjct: 506 ERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIEL 565
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F MQ T VKPN +TFT +L AC H+GLVDEG++ F ++ Y + P+ +HY CMVD+ G
Sbjct: 566 FLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVLG 625
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG LEEA + I M L P+ +WG+ L AC H ++AE+ + L ++P N G +
Sbjct: 626 RAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLE-IEPGNHGA-Y 683
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ +LY WEG +R+ M + ++K G S I
Sbjct: 684 VLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSI 720
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 98/397 (24%), Positives = 172/397 (43%), Gaps = 82/397 (20%)
Query: 7 MHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS- 65
+H + F+ ++K+ V +H +K F V+V SL+H Y
Sbjct: 231 LHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGH 290
Query: 66 FGFARKLFD--ELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL 123
A +F+ E ++ V+WN+M+ G+ + G +A D FERM
Sbjct: 291 LDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERM---------------- 334
Query: 124 NAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWEL 183
NEG+ P+ +T+ +V+S C+ ++ L +G+ +I +NE +
Sbjct: 335 ----------------RNEGVHPNAVTMVSVMSACAK--TMNLTLGRKVCDYIDRNEMMM 376
Query: 184 NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSA---------------- 227
N + +DM+ KCG ++ A +F+ ME+R+V+SWT +I G A
Sbjct: 377 NLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMP 436
Query: 228 ---------------HRGYSEDALSLFEMMQAT--GVKPNEMTFTGVLTACVHTGLVDEG 270
G ++AL++F +Q T G +P+++T L+AC G +D G
Sbjct: 437 RKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIG 496
Query: 271 RKYFKMIDEEYDLEPRIQ----HYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
I +E RIQ ++D++ K+G +E+A EV ++ +V +W + +
Sbjct: 497 EWIHGYIKKE-----RIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIG-NKDVFVWSAMI 550
Query: 327 AACKEHKQFDMA-ERVIKQALRMVKPENDGGVFTLIC 362
A H + + A E + VKP N L+C
Sbjct: 551 AGLAMHGRGEAAIELFLDMQETQVKP-NSVTFTNLLC 586
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 93/386 (24%), Positives = 173/386 (44%), Gaps = 53/386 (13%)
Query: 22 ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDELPE 78
+ + CT F L +H+ +L+ + Y A+ L +SF +ARK+FD++
Sbjct: 145 LFQQCTSFKQLK---QIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQI-- 199
Query: 79 RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDP--GLKLFR 136
P N+ SW+ +I A A + DP + +F
Sbjct: 200 -----------------------------PQPNLYSWNILIRAL--ATSSDPIQSVLVFI 228
Query: 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA 196
M+ + P++ T ++ + L+GK+ HG +K + + + L+ YA
Sbjct: 229 RMLHDSPFGPNKFTFPVLIKAVAERRC--FLVGKAVHGMAIKTSFGDDVFVLNSLIHFYA 286
Query: 197 KCGFLKYALMVFELME--ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTF 254
CG L A +VFE++E ++++SW +++ G GY + AL LFE M+ GV PN +T
Sbjct: 287 SCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTM 346
Query: 255 TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR 314
V++AC T + GRK ID ++ + +D+F K G +E A + M
Sbjct: 347 VSVMSACAKTMNLTLGRKVCDYIDRN-EMMMNLNVCNATIDMFVKCGEVEIARGLFDNME 405
Query: 315 LEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGA 374
+ +V+ W + + + M+E I + + P D + ++ Y + + + A
Sbjct: 406 -KRDVVSWTTIIDGYAK-----MSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEA 459
Query: 375 ERV-RKLMLNQNVRKARGSSVISSLS 399
+ R+L L ++ + +++S+LS
Sbjct: 460 LAIFRELQLTKSGARPDQVTLLSTLS 485
>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
Length = 983
Score = 277 bits (708), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 138/360 (38%), Positives = 216/360 (60%), Gaps = 7/360 (1%)
Query: 38 LHSHILKLGFISHVYVATSLL--HEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSG 95
+H+H +KLG + V+ +L+ H ++ A L +A T+NT+I Y+++G
Sbjct: 232 VHAHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAG 291
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155
V +AR F+ MP RN SWSAM+ Y+ AG L LF M ++ G+ PD + VL
Sbjct: 292 RVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQAD-GVRPDDTVLVGVL 350
Query: 156 SGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERN 215
+ C+ LG L GK HG++ N + + T LVDMYAKCG ++ A+ VF++M+E+N
Sbjct: 351 AACAQLGV--LEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKN 408
Query: 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275
V++WT +I G A G +AL LF M+ GVKP+++ F G L AC HTGLVD+GR+ F
Sbjct: 409 VLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFD 468
Query: 276 MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQF 335
+ +Y ++P+I+HYGCMVDL + G L EA E++ M ++P+ +IWG+ +A C+ HK
Sbjct: 469 SMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNV 528
Query: 336 DMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++AE V+K + + +P+ G + L+ ++Y + + A +R LM + V K G S +
Sbjct: 529 ELAEYVVKHWIEL-EPDKS-GAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTV 586
>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 953
Score = 276 bits (707), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 149/398 (37%), Positives = 230/398 (57%), Gaps = 6/398 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++ F MH+ V D + L +C + + + +HS LK+G S++ + +L++
Sbjct: 361 IRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYM 420
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y ARKLFDE + ++WN+MI GY K V A+ F+ MP ++V SWS+MI
Sbjct: 421 YSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMI 480
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y +D L LF+EM G PD+ T+ +V+S C+ L + L GK H +I +N
Sbjct: 481 SGYAQNDLFDETLALFQEM-QMSGFKPDETTLVSVISACARLAA--LEQGKWVHAYIKRN 537
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+N + T L+DMY KCG ++ AL VF M E+ + +W ALI G A G E +L +F
Sbjct: 538 GLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMF 597
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M+ V PNE+TF GVL AC H GLVDEG+ +F + ++ ++P ++HYGCMVDL G+
Sbjct: 598 SNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGR 657
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG L+EA E++ M + P+V WG+ L ACK+H +M RV ++ + + +P++D G
Sbjct: 658 AGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIEL-QPDHD-GFHV 715
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
L+ ++Y KW+ +R +M V K G S+I +
Sbjct: 716 LLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEA 753
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/387 (25%), Positives = 182/387 (47%), Gaps = 68/387 (17%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ M + +D+++ ++++C+ + +H+H+LKLGF S VYV +L++ +
Sbjct: 200 LYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFS 259
Query: 63 VTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNV--------- 112
V S A ++F+E ++V+WN+++ GY + GNV EA+ + +MP R++
Sbjct: 260 VCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVL 319
Query: 113 ----------------------ASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMT 150
+WSA+IA + Y+ ++ F M G+ D++
Sbjct: 320 FGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGM-HKIGVMVDEVV 378
Query: 151 IGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC------------ 198
+ LS C++L V MGK H +K E + L+ MY+KC
Sbjct: 379 AVSALSACANLLVVN--MGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDE 436
Query: 199 --------------GFLKYALM-----VFELMEERNVISWTALICGSAHRGYSEDALSLF 239
G+LK L+ +F+ M E++V+SW+++I G A ++ L+LF
Sbjct: 437 AYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALF 496
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+ MQ +G KP+E T V++AC +++G K+ + L + ++D++ K
Sbjct: 497 QEMQMSGFKPDETTLVSVISACARLAALEQG-KWVHAYIKRNGLTINVILGTTLIDMYMK 555
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFL 326
G +E A EV M +E + W + +
Sbjct: 556 CGCVETALEVFYGM-IEKGISTWNALI 581
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 50/250 (20%), Positives = 94/250 (37%), Gaps = 46/250 (18%)
Query: 93 KSGNVCEARDFFERMPLRNVASWSAMIA--AYLNAGAYDPGLKLFREMISNEGLTPDQMT 150
KS +V + R P N A + AY+ + L++ M+SN L D T
Sbjct: 157 KSRSVNKGFLLLMRYPQANTWKMPAKASRRAYIQTNSPHFAFTLYKSMLSNY-LGADNYT 215
Query: 151 IGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFEL 210
++ CS S K H ++K ++ + + L++ ++ C + A VF
Sbjct: 216 YPLLIQACSIRRSE--WEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNE 273
Query: 211 MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
+ +SW +++ G G E+A ++ M
Sbjct: 274 SSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMP--------------------------- 306
Query: 271 RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330
E I M+ LFG G + EA ++ M LE +++ W + +A +
Sbjct: 307 -------------ERSIIASNSMIVLFGMRGLVVEACKLFDEM-LEKDMVTWSALIACFQ 352
Query: 331 EHKQFDMAER 340
+++ ++ A R
Sbjct: 353 QNEMYEEAIR 362
>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Glycine max]
Length = 1116
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 152/401 (37%), Positives = 237/401 (59%), Gaps = 15/401 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+ +M +V D + +L+S N LH+ IL LG + +V TSL++
Sbjct: 48 LSLYLRMRLHAVLPDLHTFPFLLQS---INTPHRGRQLHAQILLLGLANDPFVQTSLINM 104
Query: 61 YVVTSFG---FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
Y +S G FAR+ FDE+ + + +WN +I +K+G + AR F++MP +NV SWS
Sbjct: 105 Y--SSCGTPTFARQAFDEITQPDLPSWNAIIHANAKAGMIHIARKLFDQMPEKNVISWSC 162
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEG--LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
MI Y++ G Y L LFR + + EG L P++ T+ +VLS C+ LG+ L GK H +
Sbjct: 163 MIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGA--LQHGKWVHAY 220
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFE-LMEERNVISWTALICGSAHRGYSED 234
I K +++ + T L+DMYAKCG ++ A +F+ L E++V++W+A+I + G SE+
Sbjct: 221 IDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMHGLSEE 280
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
L LF M GV+PN +TF VL ACVH GLV EG +YFK + EY + P IQHYGCMV
Sbjct: 281 CLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGCMV 340
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
DL+ +AG +E+A+ V+++M +EP+V+IWG+ L + H + E I + L + P N
Sbjct: 341 DLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHGDVETCEIAITKLLEL-DPANS 399
Query: 355 GGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ ++Y +W +R LM + ++K G S++
Sbjct: 400 SA-YVLLSNVYAKLGRWREVRHLRDLMEVRGIKKLPGCSLV 439
>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 643
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 152/425 (35%), Positives = 236/425 (55%), Gaps = 37/425 (8%)
Query: 4 FSQMHRQ-SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
F +M R+ + P DSFS +LK+ + +L LH + G +H++V T+L+ Y
Sbjct: 93 FVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQLHCQAIVHGLDTHLFVGTTLVSMYS 152
Query: 63 VTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
F FA+K+F+E+ E N V WN ++ + G+V A F RMP RN+ SW+ M+A
Sbjct: 153 ECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMFNRMPFRNLTSWNVMLAG 212
Query: 122 YLNAGAYDPGLKLFREM------------------------------ISNEGLTPDQMTI 151
Y AG + KLF EM + G+ P+++++
Sbjct: 213 YTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQVGMRPNEVSL 272
Query: 152 GAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELM 211
LS C+ G++ GK HGFI K+ + + L+D Y+KCG + A +VFE M
Sbjct: 273 TGALSACADAGAIEF--GKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMARLVFERM 330
Query: 212 -EERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
E+R+++SWT++I G A GY E+A+ LF M+ +G++P+ + F +L AC H GL+++G
Sbjct: 331 PEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEKG 390
Query: 271 RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330
+YF + + Y++EP I+HYGCMVDL+G+AG L++AYE I M + P IIW + L AC
Sbjct: 391 YEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLLGACS 450
Query: 331 EHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKAR 390
H +AERV K+ L + P N G L+ ++Y + KW+ VR+ M +Q + K
Sbjct: 451 IHGNVKLAERV-KERLSELDPNNSGD-HVLLSNIYAVAGKWKDVAAVRRSMTDQRMNKTP 508
Query: 391 GSSVI 395
G S+I
Sbjct: 509 GWSMI 513
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 83/350 (23%), Positives = 146/350 (41%), Gaps = 50/350 (14%)
Query: 22 ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT---SFGFARKLFDELPE 78
+L +C NL +H+++ K G + +A LL V+ + +AR+LF P
Sbjct: 11 LLTNCRSLKNLK---QVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHFPN 67
Query: 79 RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL--NAGAY---DPGLK 133
+ NT+I+G ++S + F M R A + A+L A +Y + G++
Sbjct: 68 PDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQ 127
Query: 134 L------------------------------FREMISNEGLTPDQMTIGAVLSGCSHLGS 163
L F + + E P+ + AV++ C G
Sbjct: 128 LHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGD 187
Query: 164 V-GLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTAL 222
V G M + F W +++ Y K G L+ A +F M ++ +SW+ +
Sbjct: 188 VKGADMMFNRMPFRNLTSW-------NVMLAGYTKAGELELARKLFLEMPVKDDVSWSTM 240
Query: 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD 282
I G AH G+ +A F +Q G++PNE++ TG L+AC G ++ G+ I E+
Sbjct: 241 IVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFI-EKSG 299
Query: 283 LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
+ ++D + K G + A V M + +++ W S +A H
Sbjct: 300 FLWMVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMH 349
>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
Length = 575
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 137/346 (39%), Positives = 218/346 (63%), Gaps = 6/346 (1%)
Query: 51 VYVATSLLHEYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL 109
V++ +L YV AR++FD + ER+ V+WNTMI GY+ +G V AR+ F M
Sbjct: 106 VFLCNVMLAAYVTRGEVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDD 165
Query: 110 RNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMG 169
R+ SWS+M++AY L+L+REM + + PD T+ +VLS CS +G+ L +G
Sbjct: 166 RDAFSWSSMMSAYTKGRRSKDALELWREMRA-ACVNPDCTTMVSVLSACSDMGA--LAVG 222
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR 229
H F+ N EL+ ++ T L+DMYAKCG ++ ++ VF M ++V++W+++I G A+
Sbjct: 223 AEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANH 282
Query: 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQH 289
G+ DALSLF M + G++PNE+TF GVL +C H GLV +G+KYF + + + P++QH
Sbjct: 283 GFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQH 342
Query: 290 YGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349
YGCMVDL G++G +EEA ++IR M EP+ +IW + L AC+ +K ++AE + + LR++
Sbjct: 343 YGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGACRIYKNVEVAEEAMAK-LRVL 401
Query: 350 KPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
P DG + L+ ++Y WEG +R+ + + +++ G S I
Sbjct: 402 DPHADGH-YVLLSNIYAQANSWEGVAEMRRTLRRERIQRIPGRSSI 446
>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 137/383 (35%), Positives = 235/383 (61%), Gaps = 6/383 (1%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLF 73
D F+ ++KSC+ + +H+H+ K G S++ + +L+ Y S A K+F
Sbjct: 118 DRFTFPFVIKSCSGLVCYNLGKQVHAHLCKFGPKSNITMENALIDMYTKCASLLDAHKVF 177
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
D + ER+A++WN++I G+ G + +A F+ MP R + SW+AMI+ Y G+Y L
Sbjct: 178 DGMVERDAISWNSIISGHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALY 237
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
+FR+M G+ PD+++I +VL C+ LG+ L +GK H + +N I L++
Sbjct: 238 VFRQM-QIVGVEPDEISIISVLPACAQLGA--LEVGKWIHMYCDRNGLLRKTSICNALME 294
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
MY+KCG + A +F+ M + +VISW+ +I G A+ G + +A+ LF+ M+ ++PN +T
Sbjct: 295 MYSKCGCIGQAYQLFDQMSKGDVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGIT 354
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
F G+L+AC H G +EG YF + ++Y +EP ++HYGC+VD+ G+AG L +A +VI M
Sbjct: 355 FLGLLSACAHAGFWNEGLAYFDSMSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIEKM 414
Query: 314 RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEG 373
++P+ IWGS L++C+ H D+A + + L ++P+ D G + L+ ++Y KW+G
Sbjct: 415 PMKPDSKIWGSLLSSCRTHSNLDIA-IIAMEHLEELEPD-DTGNYVLLSNIYADLAKWDG 472
Query: 374 AERVRKLMLNQNVRKARGSSVIS 396
R+RKL+ +++++K GSS+I
Sbjct: 473 VSRMRKLIKSKSMKKTPGSSLID 495
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 90/369 (24%), Positives = 158/369 (42%), Gaps = 65/369 (17%)
Query: 22 ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT-SFGFARKLFDELPERN 80
IL++C N+ + +H+H++K ++ T ++ T G+A LF ++ E N
Sbjct: 20 ILQNC---KNIVELKSIHAHVIKYSLSQSSFLVTKMVDVCDKTEDLGYASLLFKQVKEPN 76
Query: 81 AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMIS 140
+N MI+ ++ + A F++ M LR ++ S
Sbjct: 77 GYLYNAMIRAHTHNKVYALAILFYKEM-LR------------------------LKDPES 111
Query: 141 NEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC-- 198
+ PD+ T V+ CS G V +GK H + K + N + L+DMY KC
Sbjct: 112 ENPIFPDRFTFPFVIKSCS--GLVCYNLGKQVHAHLCKFGPKSNITMENALIDMYTKCAS 169
Query: 199 -----------------------------GFLKYALMVFELMEERNVISWTALICGSAHR 229
G ++ A +F+LM R ++SWTA+I G
Sbjct: 170 LLDAHKVFDGMVERDAISWNSIISGHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRL 229
Query: 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQH 289
G DAL +F MQ GV+P+E++ VL AC G ++ G K+ M + L +
Sbjct: 230 GSYADALYVFRQMQIVGVEPDEISIISVLPACAQLGALEVG-KWIHMYCDRNGLLRKTSI 288
Query: 290 YGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349
+++++ K G + +AY++ M + +VI W + + H + A + K+ ++
Sbjct: 289 CNALMEMYSKCGCIGQAYQLFDQMS-KGDVISWSTMIGGLANHGKAREAIELFKR-MKKA 346
Query: 350 KPENDGGVF 358
K E +G F
Sbjct: 347 KIEPNGITF 355
>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Cucumis sativus]
Length = 782
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 148/398 (37%), Positives = 237/398 (59%), Gaps = 10/398 (2%)
Query: 3 LFSQM-HRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+FS+M + S+ D+F++ IL +C + L + +H++IL+ + V +L+ Y
Sbjct: 261 IFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMY 320
Query: 62 VVTS-FGFARKLF--DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
+ AR + + N + + +++ GY+K GNV AR+ F ++ R+V +W+AM
Sbjct: 321 AKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAM 380
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I Y+ G ++ L+LFR M+ NEG P+ T+ A+LS S L L GK H +K
Sbjct: 381 IVGYVQNGLWNDALELFRLMV-NEGPEPNSYTLAAMLSVSSSL--TILEHGKQIHASAIK 437
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSEDALS 237
+ L+ MYAK G + A VF+L ++ ++SWT++I A G ++A++
Sbjct: 438 AGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAIN 497
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LFE M + G+KP+ +T+ GVL+AC H GLV++GRKY+ M+ E +++EP + HY CM+DL+
Sbjct: 498 LFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLY 557
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
G+AG L+EAY I +M +EP+ I WGS LA+CK HK D+A +V + L ++ P N G
Sbjct: 558 GRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLA-KVAAERLLLIDPGNSGAY 616
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L ++Y+ KWE A + RKLM ++ VRK +G S I
Sbjct: 617 LAL-ANVYSACGKWENAAQTRKLMKDRGVRKEKGISWI 653
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 103/384 (26%), Positives = 184/384 (47%), Gaps = 43/384 (11%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+F++M + VP F++ ++L SC L + +HS ++KLG S V VATSLL+ Y
Sbjct: 129 MFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYA 188
Query: 63 VTSFG-FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
A+ +FD + +N TWN +I Y +SG A FE+MP R++ SW++MI+
Sbjct: 189 KCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISG 248
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y G L +F +M++ L PD T+ ++LS C++L + + GK H +I++ E
Sbjct: 249 YSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNI--GKQIHAYILRAET 306
Query: 182 ELNEQIATILVDMYAKCGFLKYALM---------------------------------VF 208
E + + L+ MYAK G ++ A + +F
Sbjct: 307 ETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIF 366
Query: 209 ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
+ +R+V++WTA+I G G DAL LF +M G +PN T +L+ +++
Sbjct: 367 NKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILE 426
Query: 269 EGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
G++ + I P + + ++ ++ K G + A V + ++ W S +
Sbjct: 427 HGKQIHASAIKAGESSTPSVTN--ALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIM 484
Query: 328 ACKEH----KQFDMAERVIKQALR 347
A +H + ++ ER++ ++
Sbjct: 485 ALAQHGLGKEAINLFERMLSVGMK 508
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 116/412 (28%), Positives = 194/412 (47%), Gaps = 55/412 (13%)
Query: 13 PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT-SFGFARK 71
P+ S HIL++ + +H I+K G VY+ +L+ Y T S FA
Sbjct: 7 PTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHH 66
Query: 72 LFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPG 131
+FDE+P ++ +WNT+I GY+K GN +R MP + SW+A+I Y G +D
Sbjct: 67 VFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNA 126
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
+ +F +MIS E + P Q T+ VLS C+ + L +G+ H F+VK +AT L
Sbjct: 127 IWMFAKMIS-ERVPPSQFTVSNVLSSCA--ANQTLDIGRKIHSFVVKLGLGSCVPVATSL 183
Query: 192 VDMYAKCGFLKYALMV-------------------------------FELMEERNVISWT 220
++MYAKCG A +V FE M +R+++SW
Sbjct: 184 LNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWN 243
Query: 221 ALICGSAHRGYSEDALSLF-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE 279
++I G + +GY+ +AL +F +M+ +KP+ T +L+AC + ++ G++
Sbjct: 244 SMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQI-----H 298
Query: 280 EYDLEPRIQHYG----CMVDLFGKAGFLEEAYEVI---RTMRLEPNVIIWGSFLAACKEH 332
Y L + G ++ ++ K+G +E A ++ RT L N+I + S L +
Sbjct: 299 AYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNL--NIIAFTSLLDGYTKL 356
Query: 333 KQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384
A + + LR + D +T + Y N W A + +LM+N+
Sbjct: 357 GNVKPAREIFNK-LR----DRDVVAWTAMIVGYVQNGLWNDALELFRLMVNE 403
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 105/232 (45%), Gaps = 46/232 (19%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHH---LHSHILKLGFISHVYVATSL 57
++LF M + +S+++ +L + +LT++ H +H+ +K G S V +L
Sbjct: 394 LELFRLMVNEGPEPNSYTLAAMLSVSS---SLTILEHGKQIHASAIKAGESSTPSVTNAL 450
Query: 58 LHEYVVT-SFGFARKLFDELP--ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVAS 114
+ Y T + A+++FD LP ++ V+W +MI ++ G EA + FERM
Sbjct: 451 IAMYAKTGNINVAKRVFD-LPNGKKEIVSWTSMIMALAQHGLGKEAINLFERM------- 502
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
+ G+ PD +T VLS C+H+G V G+ +
Sbjct: 503 -------------------------LSVGMKPDHITYVGVLSACTHVGLVE--QGRKYYN 535
Query: 175 FIVK-NEWELNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALIC 224
+ + +E E ++D+Y + G L+ A + E M E + I+W +L+
Sbjct: 536 MMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLA 587
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 144/396 (36%), Positives = 230/396 (58%), Gaps = 5/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+QLF +M ++ + +++ +L +C +L +I + G ++ ++ ++L
Sbjct: 217 LQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDM 276
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
YV S AR+LFD++ E++ V+W TMI GY+K G+ AR F+ MP ++ +W+A+I
Sbjct: 277 YVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALI 336
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
++Y G L +FRE+ N+ P+++T+ + L+ C+ LG++ L G H +I K
Sbjct: 337 SSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDL--GGWIHVYIKKQ 394
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+LN I T L+DMY+KCG L+ AL VF +E R+V W+A+I G A G+ A+ LF
Sbjct: 395 GIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLF 454
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MQ T VKPN +TFT +L AC H+GLVDEGR +F + Y + P +HY CMVD+ G+
Sbjct: 455 SKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDILGR 514
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG LEEA E+I M + P+ +WG+ L AC+ + ++AE + L N+ G +
Sbjct: 515 AGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLE--TDSNNHGAYV 572
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y KW+ R+R+ M + K G S I
Sbjct: 573 LLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSI 608
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/357 (26%), Positives = 164/357 (45%), Gaps = 44/357 (12%)
Query: 35 IHHLHSHILKLGFISHVYVATSLLHEYVVTS---FGFARKLFDELPERNAVTWNTMIKGY 91
+ LH+H+L+ G AT L ++S +A K+FD++P N TWNT+I+ +
Sbjct: 46 LKQLHAHMLRTGLFFDPPSATKLFTACALSSPSSLDYACKVFDQIPRPNLYTWNTLIRAF 105
Query: 92 SKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTI 151
+ S P++ GL +F +M+ P+ T
Sbjct: 106 ASSPK-----------PIQ--------------------GLLVFIQMLHESQRFPNSYTF 134
Query: 152 GAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELM 211
V+ + + S LL G++ HG ++K + + I+ L+ Y+ G L A +VF +
Sbjct: 135 PFVIKAATEVSS--LLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKI 192
Query: 212 EERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR 271
E++++SW ++I G G E+AL LF+ M+ +PN +T GVL+AC ++ GR
Sbjct: 193 VEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGR 252
Query: 272 KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKE 331
I E ++ + M+D++ K G LE+A + M E +++ W + + +
Sbjct: 253 WACDYI-ERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKME-EKDIVSWTTMIDGYAK 310
Query: 332 HKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERV-RKLMLNQNVR 387
+D A RV V P D + + Y N K + A + R+L LN+N +
Sbjct: 311 VGDYDAARRVFD-----VMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTK 362
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/364 (24%), Positives = 167/364 (45%), Gaps = 70/364 (19%)
Query: 3 LFSQM-HRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+F QM H +S++ ++K+ T ++L +H ++K F S ++++ SL+H Y
Sbjct: 117 VFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFY 176
Query: 62 V-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ A +F ++ E++ V+WN+MI G+ + G+ EA F+RM + N
Sbjct: 177 SSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENA-------- 228
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
P+++T+ VLS C+ + L G+ A +I +N
Sbjct: 229 ------------------------RPNRVTMVGVLSACAK--RIDLEFGRWACDYIERNG 262
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSA------------- 227
++N ++ ++DMY KCG L+ A +F+ MEE++++SWT +I G A
Sbjct: 263 IDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFD 322
Query: 228 ------------------HRGYSEDALSLFEMMQAT-GVKPNEMTFTGVLTACVHTGLVD 268
G ++AL++F +Q KPNE+T L AC G +D
Sbjct: 323 VMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMD 382
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
G + + ++ ++ ++D++ K G LE+A EV ++ +V +W + +A
Sbjct: 383 LG-GWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERR-DVFVWSAMIAG 440
Query: 329 CKEH 332
H
Sbjct: 441 LAMH 444
>gi|293336578|ref|NP_001168380.1| uncharacterized protein LOC100382149 [Zea mays]
gi|223947871|gb|ACN28019.1| unknown [Zea mays]
gi|413955892|gb|AFW88541.1| hypothetical protein ZEAMMB73_254585 [Zea mays]
Length = 651
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 146/397 (36%), Positives = 236/397 (59%), Gaps = 7/397 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +FS M + P D ++ ++ +C + H +++ G S V V L+H
Sbjct: 254 LAVFSDMREEGWPVDEAVMVSVVAACAKSGVIQNGEVCHGLVVRAGLGSRVNVQNVLIHM 313
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y AR+LFD + +WN+MI GY K+G V +A+ F+ MP ++ SWSAMI
Sbjct: 314 YSSCQDVVAARRLFDNGESLDHFSWNSMISGYLKNGRVEDAKALFDVMPDKDNVSWSAMI 373
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A ++ L +F M ++E + PD +T+ +V+S CS+L + L GK H +I K
Sbjct: 374 AGCVHNNQSSEALNVFDSMRAHE-IKPDDVTLVSVISACSNLSA--LEQGKLVHEYIRKY 430
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
++ + + T L+DMY KCG ++ AL VF+++EE+ W A+I G A G +L +F
Sbjct: 431 QYNITIVLGTSLIDMYMKCGCMEAALEVFDMLEEKGTPCWNAVIVGLAMNGLVTRSLDMF 490
Query: 240 EMMQATGVK-PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
M+ATG PNE+TFTGVL+AC H GLV+EGR++FK++ +Y + P I+HYGCMVDL G
Sbjct: 491 SEMEATGTAVPNEITFTGVLSACRHGGLVEEGRQFFKLMQNKYQIVPNIRHYGCMVDLLG 550
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG++ EA ++I++M + P+V WG+ L AC +H ++ ERV K+ +++ P++D G
Sbjct: 551 RAGYVREAEDMIQSMPMSPDVPAWGALLGACWKHGDSEVGERVGKKLVKL-DPDHD-GFQ 608
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
T++ ++Y W+ + +R M Q+V K G S++
Sbjct: 609 TMLSNIYASEGMWQCVKDLRGSMKQQHVAKVAGCSMV 645
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/381 (23%), Positives = 174/381 (45%), Gaps = 70/381 (18%)
Query: 11 SVPS--DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS-FG 67
S+P+ D+++ + +C ++ +HSH +K GF ++Y+ +L+H Y
Sbjct: 99 SMPAAPDTYTHPLLAAACAARGDVREGLQVHSHSVKHGFSDNLYLRNALMHMYSACGCVA 158
Query: 68 FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL------------------ 109
AR++FD P +AV+WNT++ Y + G+V +A F RMP
Sbjct: 159 SARRVFDAGPVWDAVSWNTILATYVRDGDVEQAVKVFTRMPERSAAAVSAMVALFARRGM 218
Query: 110 -------------RNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLS 156
R+ +W+AM++ + + L +F +M EG D+ + +V++
Sbjct: 219 VEEARGVFDGAEHRDAFTWTAMVSCFERNDLFMEALAVFSDM-REEGWPVDEAVMVSVVA 277
Query: 157 GCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC------------------ 198
C+ G + G+ HG +V+ + +L+ MY+ C
Sbjct: 278 ACAKSGVIQ--NGEVCHGLVVRAGLGSRVNVQNVLIHMYSSCQDVVAARRLFDNGESLDH 335
Query: 199 --------GFLKY-----ALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
G+LK A +F++M +++ +SW+A+I G H S +AL++F+ M+A
Sbjct: 336 FSWNSMISGYLKNGRVEDAKALFDVMPDKDNVSWSAMIAGCVHNNQSSEALNVFDSMRAH 395
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305
+KP+++T V++AC + +++G+ + I +Y I ++D++ K G +E
Sbjct: 396 EIKPDDVTLVSVISACSNLSALEQGKLVHEYI-RKYQYNITIVLGTSLIDMYMKCGCMEA 454
Query: 306 AYEVIRTMRLEPNVIIWGSFL 326
A EV + E W + +
Sbjct: 455 ALEVFDMLE-EKGTPCWNAVI 474
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 112/312 (35%), Gaps = 69/312 (22%)
Query: 37 HLHSHILKLGFISHVYVATSLLHEYVVTSFGFAR----------KLFDELPERNAVTWNT 86
+H+ L G ++ Y A+ LL TS AR +LF + NA T NT
Sbjct: 22 QIHAQFLASGLLADAYAASRLL--LFTTSATAARLLPHPLHHSLQLFGLVRSPNAFTCNT 79
Query: 87 MIKGYSKSG--NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
++K + G ++C PL +++M AA
Sbjct: 80 LLKAALRQGFPHLC--------FPL-----YASMPAA----------------------- 103
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
PD T + + C+ G V G H VK+ + N + L+ MY+ CG + A
Sbjct: 104 -PDTYTHPLLAAACAARGDV--REGLQVHSHSVKHGFSDNLYLRNALMHMYSACGCVASA 160
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACV-- 262
VF+ + +SW ++ G E A+ +F M P +
Sbjct: 161 RRVFDAGPVWDAVSWNTILATYVRDGDVEQAVKVFTRM------PERSAAAVSAMVALFA 214
Query: 263 HTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEP---NV 319
G+V+E R F + + MV F + EA V MR E +
Sbjct: 215 RRGMVEEARGVFDGAEHRDAFT-----WTAMVSCFERNDLFMEALAVFSDMREEGWPVDE 269
Query: 320 IIWGSFLAACKE 331
+ S +AAC +
Sbjct: 270 AVMVSVVAACAK 281
>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 145/392 (36%), Positives = 226/392 (57%), Gaps = 5/392 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+FS + + DSF ++ + +C H +L+ +H + + S V +L+ Y
Sbjct: 90 IFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYS 149
Query: 63 VT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+ + A +F + ++ +W +++ G+ K ++ AR F+ MP+RN SW+AMI
Sbjct: 150 RSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITG 209
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ PGL+LF+EM + P +TI AVLSGC+ +G+ L G S HG++ K
Sbjct: 210 YVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDL--GSSVHGYVNKTNL 267
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+L+ + L+DMYAK G L AL +F+ M +R+V SWT +I G A G AL F
Sbjct: 268 DLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSD 327
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M +GV PNE+T VL+AC H GLV EGR F+ + + + ++P+IQHYGCMVDL G+AG
Sbjct: 328 MSKSGVVPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAG 387
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L EA E+I M ++P+ +IW S L+AC H +AE K + + +P++D GV+ L+
Sbjct: 388 LLREAKELIEHMPIKPDSVIWRSLLSACLVHGNLALAEMAGKMIIEL-EPDDD-GVYILL 445
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
++Y +WE A + RK M ++ V+K G S
Sbjct: 446 WNIYCSASRWEDALKARKAMRDRRVKKKPGCS 477
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 125/280 (44%), Gaps = 37/280 (13%)
Query: 87 MIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
++ Y++ G+ +A+ F + ++ SW+ +I+ YL+ +F + + GL P
Sbjct: 43 LLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLF-HSGLRP 101
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
D + +S C H L G+ HG + + E + + L+DMY++ G ++ A
Sbjct: 102 DSFCVVGAVSACGHRKD--LSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACS 159
Query: 207 VFELMEERNVISWTALICG--------SAHRGYSE-----------------------DA 235
VF+ ME ++V SWT+L+ G +A R + E
Sbjct: 160 VFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPG 219
Query: 236 LSLFEMMQATGVK-PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
L LF+ M+A G P +T VL+ C G D G +++ +L+ + ++
Sbjct: 220 LELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKT-NLDLDVTVNNALM 278
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
D++ K+G L A ++ + M + +V W + ++ H +
Sbjct: 279 DMYAKSGALVLALKIFQEMP-KRDVFSWTTMISGLALHGK 317
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 78/161 (48%), Gaps = 4/161 (2%)
Query: 185 EQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQA 244
+ +A L++ Y + G A VF ++ +++SWT LI H A S+F +
Sbjct: 37 QHLACKLLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFH 96
Query: 245 TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE-EYDLEPRIQHYGCMVDLFGKAGFL 303
+G++P+ G ++AC H + GR M+ E +P + + ++D++ ++G +
Sbjct: 97 SGLRPDSFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGN--ALIDMYSRSGAI 154
Query: 304 EEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
E A V +TM ++ +V W S L + + A R+ +
Sbjct: 155 EVACSVFKTMEIK-DVSSWTSLLNGFIKCNDIEAARRIFDE 194
>gi|147818273|emb|CAN64718.1| hypothetical protein VITISV_026719 [Vitis vinifera]
Length = 499
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 144/395 (36%), Positives = 237/395 (60%), Gaps = 7/395 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L M R P D+++ +LK+C+ +L LH LK G HV+V SL+H Y
Sbjct: 74 LHRHMFRHGPPPDTYTFPFLLKACSALAHLLKGQELHCQALKFGLGGHVFVENSLIHLYG 133
Query: 63 VTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
S AR++FD + R+ +W T++ Y+ S +V AR F+ MP R+V S+SAM+AA
Sbjct: 134 SNSRMDSARRVFDGMGYRDIASWTTLLACYANSCSVEAARKVFDEMPERSVVSYSAMLAA 193
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ + L+LFRE+ S + + P + +VL C++LG+ L +G+ + F+ ++
Sbjct: 194 YVRGNRFREALELFRELFSVK-IEPSDSCVMSVLCACANLGA--LDVGRWVYSFVCHSKG 250
Query: 182 E-LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ ++ +IAT L+DM+ KCG +++AL+VFE +E++V WTA++ G A G E + FE
Sbjct: 251 DYVDSRIATALIDMFFKCGSIEHALLVFEGAKEKHVGEWTAMLSGLAMHGLGEQLIEAFE 310
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M +G+KP+E+TF +L+ C H+GLV+EG YF ++ ++ +EP ++H+GC+VDL G+A
Sbjct: 311 KMVDSGIKPDEVTFVALLSGCSHSGLVNEGLYYFDRMESDFGVEPTVEHFGCVVDLLGRA 370
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G +++A ++I M EPN IWG+ L AC+ +K ++ E + Q L +P N G ++
Sbjct: 371 GLIDQAMQLISEMPFEPNAAIWGALLNACRVYKNVEVGE-LAAQWLIKDEPWN-GALYMT 428
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ LY +W+ E+V+ M RK G S+I
Sbjct: 429 LLSLYREAGRWDEVEKVKLKMKEVGCRKGPGCSLI 463
>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
Length = 635
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 150/426 (35%), Positives = 234/426 (54%), Gaps = 37/426 (8%)
Query: 3 LFSQMHRQS-VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+F +M R+ V DSFS ++K+ +F +L +H LK G SH++V T+L+ Y
Sbjct: 84 VFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMY 143
Query: 62 V-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
FARK+FDE+ + N V WN +I + +V AR+ F++M +RN SW+ M+A
Sbjct: 144 GGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLA 203
Query: 121 AYLNAGAYDPGLKLFREM------------------------------ISNEGLTPDQMT 150
Y+ AG + ++F EM + G++P++++
Sbjct: 204 GYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVS 263
Query: 151 IGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFEL 210
+ VLS CS GS GK HGF+ K + + L+DMY++CG + A +VFE
Sbjct: 264 LTGVLSACSQSGS--FEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEG 321
Query: 211 MEE-RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
M+E R ++SWT++I G A G E+A+ LF M A GV P+ ++F +L AC H GL++E
Sbjct: 322 MQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEE 381
Query: 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAAC 329
G YF + Y +EP I+HYGCMVDL+G++G L++AY+ I M + P I+W + L AC
Sbjct: 382 GEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGAC 441
Query: 330 KEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKA 389
H ++AE+V KQ L + P N G + L+ + Y KW+ +RK M+ Q ++K
Sbjct: 442 SSHGNIELAEQV-KQRLNELDPNNSGDL-VLLSNAYATAGKWKDVASIRKSMIVQRIKKT 499
Query: 390 RGSSVI 395
S++
Sbjct: 500 TAWSLV 505
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/363 (23%), Positives = 153/363 (42%), Gaps = 48/363 (13%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT---SFGFARKLFDEL 76
L +L SC + LT IH L +K G + Y L+ ++ + +AR+L
Sbjct: 1 LSLLNSCKNLRALTQIHGL---FIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCF 57
Query: 77 PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA-----SWSAMIAAYLNAGAYDPG 131
PE +A +NT+++GYS+S + F M + S++ +I A N + G
Sbjct: 58 PEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTG 117
Query: 132 LKL------------------------------FREMISNEGLTPDQMTIGAVLSGCSHL 161
++ F + +E P+ + AV++ C
Sbjct: 118 FQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRG 177
Query: 162 GSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTA 221
V + +V+N N +++ Y K G L+ A +F M R+ +SW+
Sbjct: 178 NDVAGAR-EIFDKMLVRNHTSWN-----VMLAGYIKAGELESAKRIFSEMPHRDDVSWST 231
Query: 222 LICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY 281
+I G AH G ++ F +Q G+ PNE++ TGVL+AC +G + G+ + E+
Sbjct: 232 MIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFV-EKA 290
Query: 282 DLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERV 341
+ ++D++ + G + A V M+ + ++ W S +A H Q + A R+
Sbjct: 291 GYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRL 350
Query: 342 IKQ 344
+
Sbjct: 351 FNE 353
>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
Length = 951
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 138/360 (38%), Positives = 216/360 (60%), Gaps = 7/360 (1%)
Query: 38 LHSHILKLGFISHVYVATSLL--HEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSG 95
+H+H +KLG + V+ +L+ H ++ A L +A T+NT+I Y+++G
Sbjct: 232 VHAHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAG 291
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155
V +AR F+ MP RN SWSAM+ Y+ AG L LF M ++ G+ PD + VL
Sbjct: 292 RVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQAD-GVRPDDTVLVGVL 350
Query: 156 SGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERN 215
+ C+ LG L GK HG++ N + + T LVDMYAKCG ++ A+ VF++M+E+N
Sbjct: 351 AACAQLGV--LEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKN 408
Query: 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275
V++WT +I G A G +AL LF M+ GVKP+++ F G L AC HTGLVD+GR+ F
Sbjct: 409 VLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFD 468
Query: 276 MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQF 335
+ +Y ++P+I+HYGCMVDL + G L EA E++ M ++P+ +IWG+ +A C+ HK
Sbjct: 469 SMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNV 528
Query: 336 DMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++AE V+K + + +P+ G + L+ ++Y + + A +R LM + V K G S +
Sbjct: 529 ELAEYVVKHWIEL-EPDKS-GAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTV 586
>gi|90265157|emb|CAH67783.1| H0201G08.10 [Oryza sativa Indica Group]
Length = 530
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 142/403 (35%), Positives = 230/403 (57%), Gaps = 12/403 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHH----LHSHILKLGFISHVYVATS 56
+ +F M V D+ ++ L +C + T + +H+ ++ G + V+V+T
Sbjct: 96 IAVFGDMVADGVFPDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTE 155
Query: 57 LLHEYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASW 115
L+ Y + +R++FD++P R+ +TWN M+ Y++ G V A + F MP R+V SW
Sbjct: 156 LIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDVVSW 215
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNE--GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH 173
+ ++A Y AG L LFR+M+S + P+ T+ +L C+ G L G H
Sbjct: 216 NTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGC--LETGIWVH 273
Query: 174 GFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFE-LMEERNVISWTALICGSAHRGYS 232
+I +N + + L+DMY KCG + AL VFE ++++ SWT +ICG A G +
Sbjct: 274 AYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGRT 333
Query: 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC 292
DAL +F+MMQ G+ P+++T GVL AC H GLVDEG YF ++ ++ + P+I+HYGC
Sbjct: 334 TDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGC 393
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE 352
M+DL G+ G L+EAY +IRTM ++PN +IWG+FL+ACK H ++ ++ + L + P+
Sbjct: 394 MIDLLGRVGRLQEAYSMIRTMPMDPNTVIWGAFLSACKVHGNMELG-KIAAEELTRLDPD 452
Query: 353 NDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ G ++ +Y + W G R R+ M + V+K G S I
Sbjct: 453 DPWG-RVMLSSMYAKAQDWIGLARERREMNSMQVKKTPGCSSI 494
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 90/373 (24%), Positives = 159/373 (42%), Gaps = 47/373 (12%)
Query: 7 MHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHV--YVATSLLHEYV-V 63
MH ++ S + ++ L H +L+ +H +LK G + HV ++ T+LL Y +
Sbjct: 1 MHPLTLSSTALRLIKSLSPAVHGAHLSA-SSIHCLLLKAGLL-HVGAHLPTALLSAYAAL 58
Query: 64 TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL 123
S AR+LFDE+PE+ V M + + SG +A F M V + +A L
Sbjct: 59 GSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVFPDNVAVAVAL 118
Query: 124 ----NAGAY----DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
AG++ +PG K+ ++ G+ PD ++ + G+S
Sbjct: 119 GACHGAGSWTARRNPG-KMIHALVVTSGIVPDVFVSTELIR----------VYGESGELP 167
Query: 176 IVKNEWELNEQIATI----LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGY 231
+ + ++ +TI ++ YA+ G + A +F M R+V+SW ++ G G
Sbjct: 168 VSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGR 227
Query: 232 SEDALSLFEMM---QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQ 288
+AL LF M + V PN T + +L AC G ++ G I+ R+
Sbjct: 228 CREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERN-----RMN 282
Query: 289 HYG----CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
G C++D++ K G ++ A +V + ++ W + + H +
Sbjct: 283 DDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGR-------TTD 335
Query: 345 ALRMVKPENDGGV 357
ALRM D G+
Sbjct: 336 ALRMFDMMQDNGI 348
>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 643
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 150/426 (35%), Positives = 234/426 (54%), Gaps = 37/426 (8%)
Query: 3 LFSQMHRQS-VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+F +M R+ V DSFS ++K+ +F +L +H LK G SH++V T+L+ Y
Sbjct: 92 VFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMY 151
Query: 62 V-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
FARK+FDE+ + N V WN +I + +V AR+ F++M +RN SW+ M+A
Sbjct: 152 GGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLA 211
Query: 121 AYLNAGAYDPGLKLFREM------------------------------ISNEGLTPDQMT 150
Y+ AG + ++F EM + G++P++++
Sbjct: 212 GYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVS 271
Query: 151 IGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFEL 210
+ VLS CS GS GK HGF+ K + + L+DMY++CG + A +VFE
Sbjct: 272 LTGVLSACSQSGS--FEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEG 329
Query: 211 MEE-RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
M+E R ++SWT++I G A G E+A+ LF M A GV P+ ++F +L AC H GL++E
Sbjct: 330 MQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEE 389
Query: 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAAC 329
G YF + Y +EP I+HYGCMVDL+G++G L++AY+ I M + P I+W + L AC
Sbjct: 390 GEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGAC 449
Query: 330 KEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKA 389
H ++AE+V KQ L + P N G + L+ + Y KW+ +RK M+ Q ++K
Sbjct: 450 SSHGNIELAEQV-KQRLNELDPNNSGDL-VLLSNAYATAGKWKDVASIRKSMIVQRIKKT 507
Query: 390 RGSSVI 395
S++
Sbjct: 508 TAWSLV 513
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/363 (23%), Positives = 153/363 (42%), Gaps = 48/363 (13%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT---SFGFARKLFDEL 76
L +L SC + LT IH L +K G + Y L+ ++ + +AR+L
Sbjct: 9 LSLLNSCKNLRALTQIHGL---FIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCF 65
Query: 77 PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA-----SWSAMIAAYLNAGAYDPG 131
PE +A +NT+++GYS+S + F M + S++ +I A N + G
Sbjct: 66 PEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTG 125
Query: 132 LKL------------------------------FREMISNEGLTPDQMTIGAVLSGCSHL 161
++ F + +E P+ + AV++ C
Sbjct: 126 FQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRG 185
Query: 162 GSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTA 221
V + +V+N N +++ Y K G L+ A +F M R+ +SW+
Sbjct: 186 NDVAGAR-EIFDKMLVRNHTSWN-----VMLAGYIKAGELESAKRIFSEMPHRDDVSWST 239
Query: 222 LICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY 281
+I G AH G ++ F +Q G+ PNE++ TGVL+AC +G + G+ + E+
Sbjct: 240 MIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFV-EKA 298
Query: 282 DLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERV 341
+ ++D++ + G + A V M+ + ++ W S +A H Q + A R+
Sbjct: 299 GYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRL 358
Query: 342 IKQ 344
+
Sbjct: 359 FNE 361
>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 786
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 148/400 (37%), Positives = 237/400 (59%), Gaps = 10/400 (2%)
Query: 1 MQLFSQMHRQSVPS-DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+ +FS+M R S+ S D F++ +L +C + L + +HSHI+ GF V +L+
Sbjct: 263 LDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALIS 322
Query: 60 EYV-VTSFGFARKLFDELPERNAVT--WNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
Y AR+L ++ ++ + ++ GY K G++ EA++ F+ + R+V +W+
Sbjct: 323 MYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWT 382
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
AMI Y G Y + LFR M+ E P+ T+ A+LS S L S+G GK HG
Sbjct: 383 AMIVGYEQHGLYGEAINLFRSMVGEEQ-RPNSYTLAAMLSVASSLASLG--HGKQIHGSA 439
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSEDA 235
VK+ + ++ L+ MYAK G + A F+L+ ER+ +SWT++I A G++E+A
Sbjct: 440 VKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEA 499
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
L LFE M G++P+ +T+ GV +AC H GLV++GR+YF M+ + + P + HY CMVD
Sbjct: 500 LELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVD 559
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
LFG+AG L+EA E I M +EP+V+ WGS L+AC+ +K D+ +V + L +++PEN G
Sbjct: 560 LFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLG-KVAAERLLLLEPENSG 618
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++ + +LY+ KWE A ++RK M + V+K +G S I
Sbjct: 619 A-YSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWI 657
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 106/402 (26%), Positives = 187/402 (46%), Gaps = 72/402 (17%)
Query: 24 KSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGF-ARKLFDELPERNAV 82
KS N +H ++K G + VY+ +L++ Y T + ARKLFDE+P R A
Sbjct: 22 KSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAF 81
Query: 83 TWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNE 142
+WNT++ Y+K G++ + +FF+R+P R+ SW+ MI Y N G Y +++ EM+ E
Sbjct: 82 SWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMM-RE 140
Query: 143 GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC---- 198
G+ P Q T+ VL+ + + L GK H FIVK N ++ L++MYAKC
Sbjct: 141 GIEPSQFTLTNVLASVA--ATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPM 198
Query: 199 ---------------------------GFLKYALMVFELMEERNVISWTALICGSAHRGY 231
G + A+ FE M ER++++W ++I G RGY
Sbjct: 199 MAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGY 258
Query: 232 SEDALSLF-EMMQATGVKPNEMTFTGVLTAC-----------VHTGLVDEG--------- 270
AL +F +M++ + + P+ T VL+AC +H+ +V G
Sbjct: 259 DLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLN 318
Query: 271 ------------RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPN 318
++I++ + +I+ + ++D + K G + EA + +++ + +
Sbjct: 319 ALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLK-DRD 377
Query: 319 VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
V+ W + + ++H + A + + MV E +TL
Sbjct: 378 VVAWTAMIVGYEQHGLYGEAINLFRS---MVGEEQRPNSYTL 416
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/386 (24%), Positives = 184/386 (47%), Gaps = 43/386 (11%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+++ +M R+ + F++ ++L S L +HS I+KLG +V V+ SLL+
Sbjct: 131 IRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNM 190
Query: 61 YVVTSFG-FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A+ +FD + ++ +WN MI + + G + A FE+M R++ +W++MI
Sbjct: 191 YAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMI 250
Query: 120 AAYLNAGAYD-PGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
+ Y N YD L +F +M+ + L+PD+ T+ +VLS C++L L +G+ H IV
Sbjct: 251 SGY-NQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEK--LCIGEQIHSHIVT 307
Query: 179 NEWELNEQIATILVDMYAKC----------------------------GFLKYALM---- 206
++++ + L+ MY++C G++K M
Sbjct: 308 TGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAK 367
Query: 207 -VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG 265
+F+ +++R+V++WTA+I G G +A++LF M +PN T +L+
Sbjct: 368 NIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLA 427
Query: 266 LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSF 325
+ G++ + ++ + ++ ++ KAG + A +R E + + W S
Sbjct: 428 SLGHGKQIHGSAVKSGEIYS-VSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSM 486
Query: 326 LAACKEH----KQFDMAERVIKQALR 347
+ A +H + ++ E ++ + LR
Sbjct: 487 IIALAQHGHAEEALELFETMLMEGLR 512
>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 155/457 (33%), Positives = 239/457 (52%), Gaps = 69/457 (15%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-- 61
F QM + + D+F+ +LK+C+ ++L ++ +H+H+ K+GF ++V SL+ Y
Sbjct: 108 FFQMQKNGLFPDNFTYPFLLKACSGPSSLPLVRMIHAHVEKIGFYGDIFVPNSLIDSYSR 167
Query: 62 --------------------VVT------------SFGFARKLFDELPERNAVTWNTMIK 89
VVT A KLFDE+P+R+ V+WNTM+
Sbjct: 168 CGNAGLDGAMSLFLAMEERDVVTWNSMIGGLVRCGELQGACKLFDEMPDRDMVSWNTMLD 227
Query: 90 GYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF-------------- 135
GY+K+G + A + FERMP RN+ SWS M+ Y G D LF
Sbjct: 228 GYAKAGEMDTAFELFERMPWRNIVSWSTMVCGYSKGGDMDMARMLFDRCPVKNVVLWTTI 287
Query: 136 ----------REM------ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
RE + G+ PD + ++L+ C+ G +GL GK H + +
Sbjct: 288 IAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSILAACAESGMLGL--GKRIHASMRRW 345
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFE-LMEERNVISWTALICGSAHRGYSEDALSL 238
+ ++ +DMYAKCG L A VF +M +++V+SW ++I G A G+ E AL L
Sbjct: 346 RFRCGAKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALEL 405
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F M G +P+ TF G+L AC H GLV+EGRKYF +++ Y + P+++HYGCM+DL G
Sbjct: 406 FSWMVQEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLG 465
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+ G L+EA+ ++R+M +EPN II G+ L AC+ H D+A V +Q ++ +P +D G +
Sbjct: 466 RGGHLKEAFMLLRSMPMEPNAIILGTLLNACRMHNDVDLARAVCEQLFKL-EP-SDPGNY 523
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+L+ ++Y W VR M N K G+S I
Sbjct: 524 SLLSNIYAQAGDWMNVANVRLQMKNTGGEKPSGASSI 560
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 133/312 (42%), Gaps = 49/312 (15%)
Query: 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERNA 81
L CT NL ++ +H+ +LK ++VA L+ + + A +F+ +P N
Sbjct: 28 LHKCT---NLDSVNQIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNV 84
Query: 82 VTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISN 141
+N++I+ ++ + S+ + NA F +M N
Sbjct: 85 HLYNSIIRAHAHN---------------------SSHRSLPFNA---------FFQMQKN 114
Query: 142 EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG-- 199
GL PD T +L CS G L + + H + K + + + L+D Y++CG
Sbjct: 115 -GLFPDNFTYPFLLKACS--GPSSLPLVRMIHAHVEKIGFYGDIFVPNSLIDSYSRCGNA 171
Query: 200 FLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLT 259
L A+ +F MEER+V++W ++I G G + A LF+ M + +++ +L
Sbjct: 172 GLDGAMSLFLAMEERDVVTWNSMIGGLVRCGELQGACKLFDEMPDRDM----VSWNTMLD 227
Query: 260 ACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNV 319
G +D + F+ + I + MV + K G ++ A + ++ NV
Sbjct: 228 GYAKAGEMDTAFELFERMPWR-----NIVSWSTMVCGYSKGGDMDMARMLFDRCPVK-NV 281
Query: 320 IIWGSFLAACKE 331
++W + +A E
Sbjct: 282 VLWTTIIAGYAE 293
>gi|449446173|ref|XP_004140846.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 488
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 133/327 (40%), Positives = 206/327 (62%), Gaps = 6/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR+LF+++PE+N V+W +MI Y+K+G++ AR FF +MP RNV SW++MI++Y+ G +
Sbjct: 157 ARELFEKMPEKNVVSWTSMISAYAKAGDLATARMFFNKMPQRNVVSWNSMISSYVQHGDF 216
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L LF +M+S EG+TPD T +V S CSHLG+ L++G H + + + +L A
Sbjct: 217 QEALDLFNQMLS-EGITPDGYTFVSVFSACSHLGN--LMLGTKIH-YAIDDFSQLGVIAA 272
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
T L++MYAKCG + A +F + +++V W ++ A G ++DAL LF +MQ G+K
Sbjct: 273 TALIEMYAKCGDINRAFNLFIKIGKKDVFFWNVMLKSLALHGQAQDALKLFSLMQKQGLK 332
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
PN+ TF G L AC H G+V+EG+ F M+++EY + PRI+H+GC+VDL + G LEEA +
Sbjct: 333 PNDFTFLGALFACSHGGMVEEGQTIFDMMEKEYKIRPRIEHFGCIVDLLSRNGRLEEALD 392
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
V+ M E +V IWG+ L CK F A ++++A ++ E GG+ ++Y
Sbjct: 393 VVDKMPFEADVAIWGALLGGCKLRGDFKRAGEIVERARKLRSKE--GGIHVSFSNMYASV 450
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
E+W A R+ M N+N+ K G S +
Sbjct: 451 EQWAEAVNAREKMENENILKKTGQSSV 477
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 93/367 (25%), Positives = 153/367 (41%), Gaps = 38/367 (10%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+ + ++ + SF+ +LKSC +H ILK GF + V+ +L H
Sbjct: 15 VSLYGDLLQRGLKPHSFTYPFVLKSCADLGWFWDGKKVHCRILKTGFSLNSSVSDALFHL 74
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
YV + F + D G +AR F+ M +R+V W+ MI
Sbjct: 75 YVNFSKFTGPKDAAD--------------------GMASDARKVFDEMCVRSVEVWNRMI 114
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y + G KLF M + ++ + M G + VG +M + +
Sbjct: 115 LRYTSTGDVSGAQKLFNTMEDRDTVSWNTMISGYI--------KVGEVMKARE---LFEK 163
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
E N T ++ YAK G L A M F M +RNV+SW ++I G ++AL LF
Sbjct: 164 MPEKNVVSWTSMISAYAKAGDLATARMFFNKMPQRNVVSWNSMISSYVQHGDFQEALDLF 223
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M + G+ P+ TF V +AC H G + G K ID+ L + +++++ K
Sbjct: 224 NQMLSEGITPDGYTFVSVFSACSHLGNLMLGTKIHYAIDDFSQLG--VIAATALIEMYAK 281
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
G + A+ + + + +V W L + H Q A ++ + ND FT
Sbjct: 282 CGDINRAFNLFIKIG-KKDVFFWNVMLKSLALHGQAQDALKLFSLMQKQGLKPND---FT 337
Query: 360 LICDLYT 366
+ L+
Sbjct: 338 FLGALFA 344
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 103/233 (44%), Gaps = 38/233 (16%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF+QM + + D ++ + + +C+H NL + +H I
Sbjct: 220 LDLFNQMLSEGITPDGYTFVSVFSACSHLGNLMLGTKIHYAI------------------ 261
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
D+ + + +I+ Y+K G++ A + F ++ ++V W+ M+
Sbjct: 262 -------------DDFSQLGVIAATALIEMYAKCGDINRAFNLFIKIGKKDVFFWNVMLK 308
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
+ G LKLF ++ +GL P+ T L CSH G V G++ + K E
Sbjct: 309 SLALHGQAQDALKLF-SLMQKQGLKPNDFTFLGALFACSHGGMVE--EGQTIFDMMEK-E 364
Query: 181 WELNEQIATI--LVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRG 230
+++ +I +VD+ ++ G L+ AL V + M E +V W AL+ G RG
Sbjct: 365 YKIRPRIEHFGCIVDLLSRNGRLEEALDVVDKMPFEADVAIWGALLGGCKLRG 417
>gi|125546973|gb|EAY92795.1| hypothetical protein OsI_14599 [Oryza sativa Indica Group]
Length = 530
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 142/403 (35%), Positives = 230/403 (57%), Gaps = 12/403 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHH----LHSHILKLGFISHVYVATS 56
+ +F M V D+ ++ L +C + T + +H+ ++ G + V+V+T
Sbjct: 96 IAVFGDMVADGVFPDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTE 155
Query: 57 LLHEYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASW 115
L+ Y + +R++FD++P R+ +TWN M+ Y++ G V A + F MP R+V SW
Sbjct: 156 LIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDVVSW 215
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNE--GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH 173
+ ++A Y AG L LFR+M+S + P+ T+ +L C+ G L G H
Sbjct: 216 NTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGC--LETGIWVH 273
Query: 174 GFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFE-LMEERNVISWTALICGSAHRGYS 232
+I +N + + L+DMY KCG + AL VFE ++++ SWT +ICG A G +
Sbjct: 274 AYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGRT 333
Query: 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC 292
DAL +F+MMQ G+ P+++T GVL AC H GLVDEG YF ++ ++ + P+I+HYGC
Sbjct: 334 TDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGC 393
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE 352
M+DL G+ G L+EAY +IRTM ++PN +IWG+FL+ACK H ++ ++ + L + P+
Sbjct: 394 MIDLLGRIGRLQEAYSMIRTMPMDPNTVIWGAFLSACKVHGNMELG-KIAAEELTRLDPD 452
Query: 353 NDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ G ++ +Y + W G R R+ M + V+K G S I
Sbjct: 453 DPWG-RVMLSSMYAKAQDWIGLARERREMNSMQVKKTPGCSSI 494
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 90/373 (24%), Positives = 159/373 (42%), Gaps = 47/373 (12%)
Query: 7 MHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHV--YVATSLLHEYV-V 63
MH ++ S + ++ L H +L+ +H +LK G + HV ++ T+LL Y +
Sbjct: 1 MHPLTLSSTALRLIKSLSPAVHGAHLSA-SSIHCLLLKAGLL-HVGAHLPTALLSAYAAL 58
Query: 64 TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL 123
S AR+LFDE+PE+ V M + + SG +A F M V + +A L
Sbjct: 59 GSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVFPDNVAVAVAL 118
Query: 124 ----NAGAY----DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
AG++ +PG K+ ++ G+ PD ++ + G+S
Sbjct: 119 GACHGAGSWTARRNPG-KMIHALVVTSGIVPDVFVSTELIR----------VYGESGELP 167
Query: 176 IVKNEWELNEQIATI----LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGY 231
+ + ++ +TI ++ YA+ G + A +F M R+V+SW ++ G G
Sbjct: 168 VSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGR 227
Query: 232 SEDALSLFEMM---QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQ 288
+AL LF M + V PN T + +L AC G ++ G I+ R+
Sbjct: 228 CREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERN-----RMN 282
Query: 289 HYG----CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
G C++D++ K G ++ A +V + ++ W + + H +
Sbjct: 283 DDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGR-------TTD 335
Query: 345 ALRMVKPENDGGV 357
ALRM D G+
Sbjct: 336 ALRMFDMMQDNGI 348
>gi|115456858|ref|NP_001052029.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|38345581|emb|CAE01779.2| OSJNBa0027H06.17 [Oryza sativa Japonica Group]
gi|113563600|dbj|BAF13943.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|125589117|gb|EAZ29467.1| hypothetical protein OsJ_13541 [Oryza sativa Japonica Group]
gi|215736988|dbj|BAG95917.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 531
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 144/403 (35%), Positives = 228/403 (56%), Gaps = 12/403 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHH----LHSHILKLGFISHVYVATS 56
+ +F M V D+ ++ L +C + T + +H+ I+ G V+V+T
Sbjct: 97 IAVFGDMVADGVFPDNVALAVALGACHGAGSWTARRNPGKKIHALIVTSGIEPDVFVSTE 156
Query: 57 LLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASW 115
L+ Y +R++FD++P R+ +TWN M+ Y++ G V A + F MP R+V SW
Sbjct: 157 LIRVYGECGKLAVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYELFLAMPRRDVVSW 216
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNE--GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH 173
+ ++A Y AG L LFR+M+S + P+ T+ +L C+ G L G H
Sbjct: 217 NTVMAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGC--LETGIWVH 274
Query: 174 GFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFE-LMEERNVISWTALICGSAHRGYS 232
+I +N + + L+DMY KCG + AL VFE +R++ SWT +ICG A G +
Sbjct: 275 AYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKRDLFSWTTVICGLAMHGRA 334
Query: 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC 292
DAL +F+MMQ G+ P+++T GVL AC H GLVDEG YF ++ ++ + P+I+HYGC
Sbjct: 335 TDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGC 394
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE 352
M+DL G+ G L+EAY +IRTM ++PN +IWG+FL+ACK H ++ ++ + L + P+
Sbjct: 395 MIDLLGRVGRLQEAYSMIRTMPMDPNTVIWGAFLSACKVHGNMELG-KIAAEELTRLDPD 453
Query: 353 NDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ G ++ +Y + W G R R+ M + V+K G S I
Sbjct: 454 DPWG-RVMLSSMYAKAQDWIGLARERREMNSMQVKKTPGCSSI 495
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/363 (23%), Positives = 142/363 (39%), Gaps = 88/363 (24%)
Query: 38 LHSHILKLGFISHV--YVATSLLHEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKS 94
+H +LK G + HV ++ T+LL Y + S AR+LFDE+PE+ V M + + S
Sbjct: 32 IHCLLLKAGLL-HVGAHLPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVAS 90
Query: 95 GNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAV 154
G +A + +F +M++ +G+ PD + +
Sbjct: 91 GQAAQA-------------------------------IAVFGDMVA-DGVFPDNVALAVA 118
Query: 155 LSGCSHLGS--VGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFE--- 209
L C GS GK H IV + E + ++T L+ +Y +CG L + VF+
Sbjct: 119 LGACHGAGSWTARRNPGKKIHALIVTSGIEPDVFVSTELIRVYGECGKLAVSRRVFDDMP 178
Query: 210 ----------------------------LMEERNVISWTALICGSAHRGYSEDALSLFEM 241
M R+V+SW ++ G G +AL LF
Sbjct: 179 SRSTITWNAMLHQYARHGKVDTAYELFLAMPRRDVVSWNTVMAGYCVAGRCREALGLFRQ 238
Query: 242 M---QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG----CMV 294
M + V PN T + +L AC G ++ G I+ R+ G C++
Sbjct: 239 MVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERN-----RMNDDGYLDRCLI 293
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
D++ K G ++ A +V + ++ W + + H + ALRM D
Sbjct: 294 DMYCKCGSIDNALQVFEKAPRKRDLFSWTTVICGLAMHGR-------ATDALRMFDMMQD 346
Query: 355 GGV 357
G+
Sbjct: 347 NGI 349
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 75/177 (42%), Gaps = 7/177 (3%)
Query: 167 LMGKSAHGFIVK-NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICG 225
L S H ++K + + T L+ YA G +A +F+ M E+ ++ TA+
Sbjct: 27 LSASSIHCLLLKAGLLHVGAHLPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARA 86
Query: 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG----LVDEGRKYFKMIDEEY 281
G + A+++F M A GV P+ + L AC G + G+K +I
Sbjct: 87 HVASGQAAQAIAVFGDMVADGVFPDNVALAVALGACHGAGSWTARRNPGKKIHALIVTS- 145
Query: 282 DLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
+EP + ++ ++G+ G L + V M + I W + L H + D A
Sbjct: 146 GIEPDVFVSTELIRVYGECGKLAVSRRVFDDMPSR-STITWNAMLHQYARHGKVDTA 201
>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
Length = 649
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 140/394 (35%), Positives = 231/394 (58%), Gaps = 7/394 (1%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTH-FNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
F M R + + +L +C ++ + +H ++ G + + V +L+ Y
Sbjct: 132 FVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVVGSGVLPDLRVENALVDMYA 191
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
A KLFD + R+ V+W +++ G ++ G V EARD F RMP R+ SW+AMI
Sbjct: 192 ECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDG 251
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ A + L++FREM + ++ D+ T+ +V++ C+ LG+ L MG+ ++ +
Sbjct: 252 YVQAARFREALEMFREMQCSN-VSADEFTMVSVITACAQLGA--LEMGEWVRVYMSRQGI 308
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+++ + L+DMY+KCG ++ AL VF+ M R+ +WTA+I G A GY E+A+ +F
Sbjct: 309 KMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHR 368
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M P+E+TF GVLTAC H GLVD+GR++F + E Y++ P + HYGC++DLFG+AG
Sbjct: 369 MIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAG 428
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
+ EA + I M + PN IWG+ LAAC+ H ++ E V ++ L+M PEN V+TL+
Sbjct: 429 KITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQM-DPENS-TVYTLL 486
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y +WE R+R ++ + ++K G S+I
Sbjct: 487 SNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLI 520
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 78/342 (22%), Positives = 143/342 (41%), Gaps = 66/342 (19%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL-HEYV 62
+++M + D+++ +LK+ ++ + +H+H++K G + +VATSL+
Sbjct: 31 YARMLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAA 90
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
AR L E V WN +I G+++ EA F M
Sbjct: 91 GGDGAAARALLSERERDTPVVWNALISGHNRCRRFGEACCSFVDM--------------- 135
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+ G P +T +VLS C G+ +L+G HG +V +
Sbjct: 136 -----------------ARAGAAPTPVTYVSVLSACGK-GTGDVLLGMQVHGRVVGSGVL 177
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE--------- 233
+ ++ LVDMYA+C ++ A +F+ M+ R+V+SWT+L+ G G +
Sbjct: 178 PDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRM 237
Query: 234 ----------------------DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR 271
+AL +F MQ + V +E T V+TAC G ++ G
Sbjct: 238 PERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMG- 296
Query: 272 KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
++ ++ ++ ++D++ K G +E A +V + M
Sbjct: 297 EWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDM 338
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 121/289 (41%), Gaps = 25/289 (8%)
Query: 100 ARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCS 159
AR E +P R ++AA +A A + M++ G PD T +L +
Sbjct: 8 ARRLLEGIPRR------CLVAAREDAVAG------YARMLA-RGAMPDAYTFPPLLKAVA 54
Query: 160 HLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISW 219
S + ++ H +VK N +AT LV YA G A + E + W
Sbjct: 55 RGSSAAPV--RAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARALLSERERDTPVVW 112
Query: 220 TALICGSAH-RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH-TGLVDEGRKYFKMI 277
ALI G R + E S +M +A G P +T+ VL+AC TG V G + +
Sbjct: 113 NALISGHNRCRRFGEACCSFVDMARA-GAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRV 171
Query: 278 DEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDM 337
L P ++ +VD++ + +E A+++ M++ +V+ W S L+ + D
Sbjct: 172 VGSGVL-PDLRVENALVDMYAECADMESAWKLFDGMQVR-SVVSWTSLLSGLTRLGRVDE 229
Query: 338 AERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386
A + + PE D +T + D Y ++ A + + M NV
Sbjct: 230 ARDLFGRM-----PERDTVSWTAMIDGYVQAARFREALEMFREMQCSNV 273
>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 136/396 (34%), Positives = 233/396 (58%), Gaps = 6/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF QM ++V D +++ +L +C H + + +H+ I+ G + ++ +LL
Sbjct: 353 LELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDL 412
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A + F++LP ++A +WN+M+ G+ +SG V +ARDFF ++P +++ SW+ M+
Sbjct: 413 YAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMV 472
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
AY+ ++ ++F +M S+ + PD+ T+ ++LS C+ +G++ G + +I KN
Sbjct: 473 NAYVKHDLFNESFEIFCKMQSS-NVKPDKTTLISLLSSCAKVGALN--HGIWVNVYIEKN 529
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
E ++ + T L+DMY KCG ++ A +F + E+NV WTA++ A G + +A+ L+
Sbjct: 530 EIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLY 589
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M+ GVKP+ +TF +L AC H GLVDEG KYF + Y++ P I HYGCMVDL G+
Sbjct: 590 LEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGR 649
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
G LEE + I M +EP+V IW S + AC+ H ++AE+ KQ + + P N+G
Sbjct: 650 VGHLEETVKFIERMPIEPDVSIWSSLMRACRSHHNVELAEQAFKQLIE-IDPTNNGA-HV 707
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y +W+ +VR + V K G ++I
Sbjct: 708 LLSNIYADAGRWDDVSKVRTKLHETGVPKQPGFTMI 743
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 163/356 (45%), Gaps = 48/356 (13%)
Query: 79 RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM 138
RN N ++ YSK G + E FE+M R+V SW+ MI+ Y+ G Y L LF EM
Sbjct: 166 RNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEM 225
Query: 139 ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198
+ + G+ PD++T+ +++S C+ L L MGK H +IV N+ + + LVDMY+KC
Sbjct: 226 LVS-GVLPDEITMVSLVSTCAKLKD--LEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKC 282
Query: 199 GFLK---------------------------------YALMVFELMEERNVISWTALICG 225
G + A +F+ M ER+++SWT ++ G
Sbjct: 283 GKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSG 342
Query: 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP 285
GY ++L LF+ M+ V P+E+ VL+ACVH D GR I Y +
Sbjct: 343 YVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFI-VTYGMLV 401
Query: 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEP--NVIIWGSFLAACKEHKQFDMAERVIK 343
++DL+ K G L+EA +RT P + W S L D A
Sbjct: 402 DGFLGNALLDLYAKCGKLDEA---LRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFN 458
Query: 344 QALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLS 399
+ PE D + + + Y ++ + + + M + NV+ + +++IS LS
Sbjct: 459 KI-----PEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDK-TTLISLLS 508
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 78/329 (23%), Positives = 152/329 (46%), Gaps = 42/329 (12%)
Query: 19 ILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFDELP 77
I+ +LKSC++ + IH +H++ I + + +L + V + A ++
Sbjct: 38 IIDLLKSCSNIREFSPIH---AHLITANLIHDPEITSQVLAFLLSVNNLDCAHQILSYSH 94
Query: 78 ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
E ++ WNT+++ K G E L+ +
Sbjct: 95 EPESIIWNTLLENKLKEGCPQEV-------------------------------LECYYH 123
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
M++ +G+ D T ++ C V L G HG I+K + N+ + L+ +Y+K
Sbjct: 124 MVT-QGVLLDISTFHFLIHACCKNFDVKL--GSEVHGRILKCGFGRNKSLNNNLMGLYSK 180
Query: 198 CGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGV 257
CG LK +FE M R+VISW +I +G +AL LF+ M +GV P+E+T +
Sbjct: 181 CGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSL 240
Query: 258 LTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI-RTMRL 315
++ C ++ G++ + ++D + L R C+VD++ K G ++EA+ ++ R
Sbjct: 241 VSTCAKLKDLEMGKRLHLYIVDNK--LWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDES 298
Query: 316 EPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
E +V++W + ++ + + D A ++ +
Sbjct: 299 EVDVVLWTTLVSGYVKSNKIDKARQLFDK 327
>gi|357119334|ref|XP_003561397.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Brachypodium distachyon]
Length = 635
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 145/402 (36%), Positives = 235/402 (58%), Gaps = 10/402 (2%)
Query: 1 MQLFSQMHRQSVPSDSF---SILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSL 57
++LF + R+++ S +F SI + L + H + + H+H+ +K G +YV +L
Sbjct: 112 LRLFPNLPRRNLHSFTFLLASISNHLDATDHRASSFLGSHVHALAVKAGAAGDLYVRNAL 171
Query: 58 LHEY-VVTSFGFARKLFDELPE-RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASW 115
H Y V G R +FDELP R+ VTWN ++ GY ++G V AR+ FE MP+R+ SW
Sbjct: 172 THFYGVCGDVGAMRTVFDELPRVRDVVTWNAVLAGYVRAGMVRAAREVFEEMPVRDEVSW 231
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
S ++ Y+ G D L +FR+M+ +G+ ++ + LS + +G L G+ H
Sbjct: 232 STLVGGYVKEGELDVALGVFRDMV-EKGVRVNEAAVVTALSAAAQMGL--LEHGRFVHEV 288
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
+ + ++ + LVDM++KCG + A VF+ M R+V +W A+ICG A G +DA
Sbjct: 289 VQRTGMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPRRDVFAWNAMICGLASHGLGQDA 348
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
+ LF G+ P ++TF GVL AC GLV EGR+YFK++ ++Y +EP ++HYGCMVD
Sbjct: 349 VELFWRFLDEGLWPTDITFVGVLNACSRCGLVAEGRRYFKLMVDKYRIEPEMEHYGCMVD 408
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
L G+AG + EA E+I M + P+ ++WG+ L+ACK H D+ V + + + +P +DG
Sbjct: 409 LLGRAGLVSEAIELIEGMHIAPDPVLWGTVLSACKTHNLVDLGITVGNKLIEL-EPAHDG 467
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
+ L+ +Y +KW+ VRKLM ++ K+ G S++ +
Sbjct: 468 H-YVLLASIYAKAKKWDEVREVRKLMSSRGTGKSAGWSLMEA 508
>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
Length = 644
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 145/398 (36%), Positives = 229/398 (57%), Gaps = 6/398 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY- 61
LF M RQ + +D F+++ +L +C+ NL +HSH+L G + +A +L+ Y
Sbjct: 198 LFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYG 257
Query: 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
A FD +P +NAV+W +M+ +K ++ ARD+FE++P +++ SW+AMI+
Sbjct: 258 KCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISC 317
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ G + L L+ M GL PD+ T+ AVLS C LG L GK H I N
Sbjct: 318 YVQGGRFHEALDLYNRM-KLLGLAPDEFTLAAVLSACGQLGD--LASGKMIHDCIRDNFH 374
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ L+DMYA+CG + A+ +F M +NVISW A+I A G ++DAL F
Sbjct: 375 NPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRS 434
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M + P+E+TF +L+AC H GL++ G+ YF+ + Y+++P ++HY CMVDL G+ G
Sbjct: 435 MVSDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGG 494
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L +A ++I+ M + P+V++WG+ L AC+ H + ++VIKQ L + GG+F LI
Sbjct: 495 QLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLEL--EGMSGGLFVLI 552
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLS 399
++ +WE +R+RKLM ++K G S I + S
Sbjct: 553 SNMLYETHQWEDMKRLRKLMREWGMKKNMGVSSIETNS 590
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 99/366 (27%), Positives = 163/366 (44%), Gaps = 68/366 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L M R+ + + F++ +LK+C + H ++KLGF+ V+V +LLH
Sbjct: 95 LPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHS 154
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y S G +R+ FDE+ +RN V+WN+MI GY+++GN EA FE M
Sbjct: 155 YASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGM------------ 202
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+GL D+ T+ ++L CS G+ L GK H ++
Sbjct: 203 --------------------RRQGLLADEFTLVSLLFACSAEGN--LEFGKLVHSHLLVR 240
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR---------- 229
++ +A LVDMY KCG L A F++M +N +SWT+++C A R
Sbjct: 241 GCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWF 300
Query: 230 ---------------------GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
G +AL L+ M+ G+ P+E T VL+AC G +
Sbjct: 301 EQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLA 360
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
G+ I + + P + + ++D++ + G ++ A + M NVI W + + A
Sbjct: 361 SGKMIHDCIRDNFH-NPGVALFNSLLDMYARCGQVDTAISLFSEMP-SKNVISWNAIIGA 418
Query: 329 CKEHKQ 334
H +
Sbjct: 419 LAMHGR 424
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 129/289 (44%), Gaps = 31/289 (10%)
Query: 95 GNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAV 154
G V AR F+R+P + ++++I AY N+ L L R MI G+ P++ T+ +
Sbjct: 58 GGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMI-RRGILPNEFTLPFL 116
Query: 155 LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER 214
L C+ + + +M HG +VK + + L+ YA G L + F+ M +R
Sbjct: 117 LKACARVQAWEHVM--VTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDR 174
Query: 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF 274
NV+SW ++I G A G + +A SLFE M+ G+ +E T +L AC G ++ G+
Sbjct: 175 NVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKL-- 232
Query: 275 KMIDEEYDLEPRIQHYGC---------MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSF 325
+ + GC +VD++GK G L A+ M + N + W S
Sbjct: 233 --------VHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFK-NAVSWTSM 283
Query: 326 LAACKEHKQFDMA--------ERVIKQALRMVKPENDGGVFTLICDLYT 366
L A + D A E+ I M+ GG F DLY
Sbjct: 284 LCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYN 332
>gi|357146237|ref|XP_003573921.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 531
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 146/404 (36%), Positives = 225/404 (55%), Gaps = 12/404 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHH----LHSHILKLGFISHVYVATS 56
+ LF M D+ ++ +L +C + T +H+ I+ G V+V+T
Sbjct: 97 LDLFQDMIADGFMPDNVALAVVLAACHGAGSCTARRSPGRMVHAFIVACGIEPDVFVSTE 156
Query: 57 LLHEYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASW 115
L+ Y AR++FD +P ++ + WNTM+ Y ++ ++ A F MP R+V SW
Sbjct: 157 LIRVYGERGEMTVARRVFDSMPTKSTIAWNTMVHQYVRNKDIEAAYRLFLAMPRRDVVSW 216
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLT--PDQMTIGAVLSGCSHLGSVGLLMGKSAH 173
+ +IA Y G L LFR+M+S T P+ T+ VLS C+ G L G H
Sbjct: 217 NTVIAGYCLVGRCKEALGLFRQMVSPSSCTVHPNGPTMSTVLSACAGAGC--LETGIWVH 274
Query: 174 GFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYS 232
+I KN+ N + L+DMYAKCG + AL VFE +R++ SWT +ICG A G +
Sbjct: 275 LYIDKNQMNDNGTLDRCLIDMYAKCGSIDKALQVFEKAPGKRDLYSWTTVICGLAMHGRA 334
Query: 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC 292
D L +F MMQ +G+ P+++TF GVL AC H GLVDEG +F + E+Y + P+I+HYGC
Sbjct: 335 NDVLRMFSMMQDSGMCPDDVTFVGVLNACAHGGLVDEGLHHFYSMQEKYRITPKIEHYGC 394
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE 352
M+DL G+ G L EAY +I+TM ++PN++IWG+FL+ACK H ++ E + R+
Sbjct: 395 MIDLLGRVGRLPEAYRMIQTMPMKPNMVIWGAFLSACKVHSSVELGEIAAAEVTRL--DP 452
Query: 353 NDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
+D ++ +Y + W G R R+ M + ++K G S ++
Sbjct: 453 DDPWARVMMSSMYAKAQDWSGLARERREMNSLQMKKTPGCSSVA 496
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 84/358 (23%), Positives = 143/358 (39%), Gaps = 78/358 (21%)
Query: 38 LHSHILKLGFI-SHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSG 95
+H + K G + + ++ T+LL Y + G AR LFDE+P ++ V M + ++ SG
Sbjct: 32 IHCLLFKAGLLHAGAHLPTALLSAYGALGRSGHARDLFDEMPNQSLVARTAMARAHAVSG 91
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155
+A D LF++MI+ +G PD + + VL
Sbjct: 92 QAAQALD-------------------------------LFQDMIA-DGFMPDNVALAVVL 119
Query: 156 SGCSHLGSVGLLM--GKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFE---- 209
+ C GS G+ H FIV E + ++T L+ +Y + G + A VF+
Sbjct: 120 AACHGAGSCTARRSPGRMVHAFIVACGIEPDVFVSTELIRVYGERGEMTVARRVFDSMPT 179
Query: 210 ---------------------------LMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
M R+V+SW +I G G ++AL LF M
Sbjct: 180 KSTIAWNTMVHQYVRNKDIEAAYRLFLAMPRRDVVSWNTVIAGYCLVGRCKEALGLFRQM 239
Query: 243 ---QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+ V PN T + VL+AC G ++ G ID+ + C++D++ K
Sbjct: 240 VSPSSCTVHPNGPTMSTVLSACAGAGCLETGIWVHLYIDKN-QMNDNGTLDRCLIDMYAK 298
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
G +++A +V + ++ W + + H + + LRM D G+
Sbjct: 299 CGSIDKALQVFEKAPGKRDLYSWTTVICGLAMHGRAN-------DVLRMFSMMQDSGM 349
>gi|356529553|ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 540
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 138/399 (34%), Positives = 235/399 (58%), Gaps = 8/399 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+ QM + + + + +LK CT + + +H+ ++K GF+ VYVA SL+
Sbjct: 111 LMLYKQMFCKDIVPNCLTFPFLLKGCTQWLDGATGQAIHTQVIKFGFLKDVYVANSLISL 170
Query: 61 YVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y+ ARK+FDE+ + VTWN+M+ G ++G + A D F +M RN+ +W+++I
Sbjct: 171 YMAGGLLSNARKVFDEMLVTDVVTWNSMVIGCLRNGGLDMAMDLFRKMNGRNIITWNSII 230
Query: 120 AAYLNAGAYDPGLKLFREM--ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
G+ L+LF EM +S++ + PD++TI +VLS C+ LG++ GK HG++
Sbjct: 231 TGLAQGGSAKESLELFHEMQILSDDMVKPDKITIASVLSACAQLGAID--HGKWVHGYLR 288
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
+N E + I T LV+MY KCG ++ A +FE M E++ +WT +I A G A +
Sbjct: 289 RNGIECDVVIGTALVNMYGKCGDVQKAFEIFEEMPEKDASAWTVMISVFALHGLGWKAFN 348
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
F M+ GVKPN +TF G+L+AC H+GLV++GR F ++ Y +EP++ HY CMVD+
Sbjct: 349 CFLEMEKAGVKPNHVTFVGLLSACAHSGLVEQGRWCFDVMKRVYSIEPQVYHYACMVDIL 408
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
+A +E+ +IR+M ++P+V +WG+ L C+ H ++ E+V+ + + +P N
Sbjct: 409 SRARLFDESEILIRSMPMKPDVYVWGALLGGCQMHGNVELGEKVVHHLIDL-EPHNH-AF 466
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNV-RKARGSSVI 395
+ CD+Y ++ A+R+R +M + + +K G S+I
Sbjct: 467 YVNWCDIYAKAGMFDAAKRIRNIMKEKRIEKKIPGCSMI 505
>gi|38345134|emb|CAE02724.2| OSJNBa0055H05.11 [Oryza sativa Japonica Group]
gi|215697200|dbj|BAG91194.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 408
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 146/388 (37%), Positives = 221/388 (56%), Gaps = 6/388 (1%)
Query: 7 MHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTS 65
M R V D I +L +C H NL +HS++L + V+ +L++ Y
Sbjct: 1 MKRSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMYASCAD 60
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
A KL++ + E+ V TM+ GY+K+G V A F MP ++V SWSAMIA Y +
Sbjct: 61 MEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAES 120
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
L LF +M G+ PD++T+ +V+S C+++G+ L + H F+ +
Sbjct: 121 SKPMEALNLFHDM-QRSGVKPDEITMLSVISACANVGA--LEKARCIHSFVENHSMCKIL 177
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
I L+DM++KCG L AL VF M ++NV++WT++I SA G AL+LFE M++
Sbjct: 178 PIGNALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSE 237
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305
G++PN +TF G+L AC H GLV+EGR FK++ ++Y +EP +HYGCMVDL G+A L +
Sbjct: 238 GIQPNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQ 297
Query: 306 AYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365
A ++I++M L PNV+IWGS LAAC+ H ++ K+ L + N GG L+ ++Y
Sbjct: 298 AADLIQSMHLRPNVVIWGSLLAACRMHGDLELGTFAAKKILEL--DPNHGGAQVLLSNIY 355
Query: 366 TMNEKWEGAERVRKLMLNQNVRKARGSS 393
W + VR +M Q K +G S
Sbjct: 356 AEYGNWNDVKEVRGVMEVQGTWKKKGCS 383
>gi|357113878|ref|XP_003558728.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 532
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 151/436 (34%), Positives = 245/436 (56%), Gaps = 49/436 (11%)
Query: 1 MQLFSQMHRQS----VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATS 56
+ L+++M R+ V D + +L++CT +H+H++K G S +V +
Sbjct: 93 VSLYARMARRGSCGGVRPDKITFPFVLRACTAMGAGGTGAQVHAHVVKAGCESDAFVRNA 152
Query: 57 LLH------EYVVTSFGF--------------------------ARKLFDELPERNAVTW 84
L+ E V S F ARKLFDE P ++ V+W
Sbjct: 153 LIGMHASCGELGVASALFDGRAREDAVAWSAMITGCARRGDIVAARKLFDECPVKDHVSW 212
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
N MI Y+K G + AR F R+P R+V SW+AMI+ ++ G++ ++LF +M G
Sbjct: 213 NVMITAYAKRGEMAPARVLFNRIPERDVVSWNAMISGHVRCGSHVYAMELFEQM-QRMGQ 271
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL----VDMYAKCGF 200
PD +T+ ++LS C+ G + + G+ H + +E L IL +DMYAKCG
Sbjct: 272 KPDVVTMLSLLSACADSGDIDV--GRRLHSSL--SEMFLRTGFTVILGNALIDMYAKCGS 327
Query: 201 LKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260
+K AL VF +M +++V +W ++I G A G+ +++ +F+ M V+P+E+TF VL A
Sbjct: 328 MKSALQVFWVMRDKDVSTWNSIIGGLALHGHVLESIDVFKKMLKEKVRPDEITFVAVLIA 387
Query: 261 CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVI 320
C H G+VD+GR+YF ++ Y +EP ++HYGCMVD+ G+AG L+EA+E I TM++EPN +
Sbjct: 388 CSHGGMVDKGREYFNLMQHHYRIEPNVKHYGCMVDMLGRAGLLKEAFEFIDTMKVEPNSV 447
Query: 321 IWGSFLAACKEHKQFDMAERVIKQALRMVKPEND-GGVFTLICDLYTMNEKWEGAERVRK 379
IW + L AC+ H + ++AE +Q ++K ND G + L+ ++Y +W +E++RK
Sbjct: 448 IWRTLLGACRVHGEIELAEHANRQ---LLKARNDESGDYVLLSNIYASAGEWSESEKMRK 504
Query: 380 LMLNQNVRKARGSSVI 395
LM + V K G +V+
Sbjct: 505 LMDDSGVNKQAGRTVV 520
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 136/318 (42%), Gaps = 45/318 (14%)
Query: 30 NNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDELPERNAVTWNT 86
+L I +H+ ++ GF+S LL V G A +FD++P + +NT
Sbjct: 19 RSLRQIKQVHALMVLRGFLSDPSALRELLFASAVAVRGAIAHAYLVFDQIPRPDLFMYNT 78
Query: 87 MIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
+I+G + + +A + RM R S G+ P
Sbjct: 79 LIRGAAHTAAPRDAVSLYARMARRG----------------------------SCGGVRP 110
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
D++T VL C+ +G+ G G H +VK E + + L+ M+A CG L A
Sbjct: 111 DKITFPFVLRACTAMGAGG--TGAQVHAHVVKAGCESDAFVRNALIGMHASCGELGVASA 168
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
+F+ + ++W+A+I G A RG D ++ ++ VK + +++ ++TA G
Sbjct: 169 LFDGRAREDAVAWSAMITGCARRG---DIVAARKLFDECPVK-DHVSWNVMITAYAKRGE 224
Query: 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG---FLEEAYEVIRTMRLEPNVIIWG 323
+ R F I E + + M+ + G + E +E ++ M +P+V+
Sbjct: 225 MAPARVLFNRIPER-----DVVSWNAMISGHVRCGSHVYAMELFEQMQRMGQKPDVVTML 279
Query: 324 SFLAACKEHKQFDMAERV 341
S L+AC + D+ R+
Sbjct: 280 SLLSACADSGDIDVGRRL 297
>gi|15241651|ref|NP_196468.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171895|sp|Q9FNN7.1|PP371_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08510
gi|9759345|dbj|BAB10000.1| unnamed protein product [Arabidopsis thaliana]
gi|50897238|gb|AAT85758.1| At5g08510 [Arabidopsis thaliana]
gi|332003930|gb|AED91313.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 511
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 224/365 (61%), Gaps = 6/365 (1%)
Query: 38 LHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGN 96
LHS + GF S + T+L+ Y + + AR++FDE+ +R+ WN MI GY + G+
Sbjct: 104 LHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGD 163
Query: 97 VCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLS 156
+ A + F+ MP +NV SW+ +I+ + G Y LK+F M ++ + P+ +T+ +VL
Sbjct: 164 MKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLP 223
Query: 157 GCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFE-LMEERN 215
C++LG L +G+ G+ +N + N + ++MY+KCG + A +FE L +RN
Sbjct: 224 ACANLGE--LEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRN 281
Query: 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275
+ SW ++I A G ++AL+LF M G KP+ +TF G+L ACVH G+V +G++ FK
Sbjct: 282 LCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFK 341
Query: 276 MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQF 335
++E + + P+++HYGCM+DL G+ G L+EAY++I+TM ++P+ ++WG+ L AC H
Sbjct: 342 SMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHGNV 401
Query: 336 DMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++AE + +AL ++P N G ++ ++Y NEKW+G R+RKLM + + KA G S
Sbjct: 402 EIAE-IASEALFKLEPTNPGNC-VIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYSYF 459
Query: 396 SSLSV 400
+ V
Sbjct: 460 VEVGV 464
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/317 (23%), Positives = 132/317 (41%), Gaps = 14/317 (4%)
Query: 35 IHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKS 94
I LH+H L+ G + LL ++ + +ARKLFD +N +I+ Y
Sbjct: 4 IKQLHAHCLRTGVDETKDLLQRLL---LIPNLVYARKLFDHHQNSCTFLYNKLIQAYYVH 60
Query: 95 GNVCEARDFFERMP---LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTI 151
E+ + + LR I A + + L+L G D
Sbjct: 61 HQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRLLHSQFFRSGFESDSFCC 120
Query: 152 GAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELM 211
+++ + LG+ L + + K + + ++ Y + G +K A+ +F+ M
Sbjct: 121 TTLITAYAKLGA--LCCARRVFDEMSKRDVP----VWNAMITGYQRRGDMKAAMELFDSM 174
Query: 212 EERNVISWTALICGSAHRGYSEDALSLFEMMQA-TGVKPNEMTFTGVLTACVHTGLVDEG 270
+NV SWT +I G + G +AL +F M+ VKPN +T VL AC + G ++ G
Sbjct: 175 PRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIG 234
Query: 271 RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330
R+ + E I ++++ K G ++ A + + + N+ W S + +
Sbjct: 235 RR-LEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLA 293
Query: 331 EHKQFDMAERVIKQALR 347
H + D A + Q LR
Sbjct: 294 THGKHDEALTLFAQMLR 310
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 84/175 (48%), Gaps = 12/175 (6%)
Query: 1 MQLFSQMHR-QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+++F M + +SV + +++ +L +C + L + L + + GF ++YV + +
Sbjct: 199 LKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIE 258
Query: 60 EYVVTS-FGFARKLFDEL-PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR-----NV 112
Y A++LF+EL +RN +WN+MI + G EA F +M LR +
Sbjct: 259 MYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQM-LREGEKPDA 317
Query: 113 ASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL 167
++ ++ A ++ G G +LF+ M ++P G ++ LG VG L
Sbjct: 318 VTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCMI---DLLGRVGKL 369
>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
Length = 768
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 144/392 (36%), Positives = 225/392 (57%), Gaps = 5/392 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+FS + + DSF ++ + +C H +L+ +H + + S V +L+ Y
Sbjct: 341 IFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYS 400
Query: 63 VT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+ + A +F + ++ +W +++ G+ K ++ AR F+ MP+RN SW+AMI
Sbjct: 401 RSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITG 460
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ PGL+LF+EM + P +TI AVLSGC+ +G+ L G S HG++ K
Sbjct: 461 YVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDL--GSSVHGYVNKTNL 518
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+L+ + L+DMYAK G L AL +F+ M +R+V SWT +I G A G AL F
Sbjct: 519 DLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSD 578
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M +G PNE+T VL+AC H GLV EGR F+ + + + ++P+IQHYGCMVDL G+AG
Sbjct: 579 MSKSGXXPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAG 638
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L EA E+I M ++P+ +IW S L+AC H +AE K + + +P++D GV+ L+
Sbjct: 639 LLREAKELIEHMPIKPDSVIWRSLLSACLVHGNLALAEMAGKMIIEL-EPDDD-GVYILL 696
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
++Y +WE A + RK M ++ V+K G S
Sbjct: 697 WNIYCSASRWEDALKARKAMRDRRVKKKPGCS 728
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 124/278 (44%), Gaps = 37/278 (13%)
Query: 87 MIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
++ Y++ G+ +A+ F + ++ SW+ +I+ YL+ +F + + GL P
Sbjct: 294 LLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLF-HSGLRP 352
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
D + +S C H L G+ HG + + E + + L+DMY++ G ++ A
Sbjct: 353 DSFCVVGAVSACGHRKD--LSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACS 410
Query: 207 VFELMEERNVISWTALICG--------SAHRGYSE-----------------------DA 235
VF+ ME ++V SWT+L+ G +A R + E
Sbjct: 411 VFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPG 470
Query: 236 LSLFEMMQATGVK-PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
L LF+ M+A G P +T VL+ C G D G +++ +L+ + ++
Sbjct: 471 LELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKT-NLDLDVTVNNALM 529
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
D++ K+G L A ++ + M + +V W + ++ H
Sbjct: 530 DMYAKSGALVLALKIFQEMP-KRDVFSWTTMISGLALH 566
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 96/217 (44%), Gaps = 10/217 (4%)
Query: 130 PGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH-GFIVKNEWELNEQIA 188
P K F +N + T +L C L + + GK+ G + + +A
Sbjct: 237 PSXKKFASY-TNRNAHMNTQTFYFLLQKCGSLEKLKQIHGKAVTLGLLCSKR----QHLA 291
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L++ Y + G A VF ++ +++SWT LI H A S+F + +G++
Sbjct: 292 CKLLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLR 351
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDE-EYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
P+ G ++AC H + GR M+ E +P + + ++D++ ++G +E A
Sbjct: 352 PDSFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGN--ALIDMYSRSGAIEVAC 409
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
V +TM ++ +V W S L + + A R+ +
Sbjct: 410 SVFKTMEIK-DVSSWTSLLNGFIKCNDIEAARRIFDE 445
>gi|110741623|dbj|BAE98759.1| hypothetical protein [Arabidopsis thaliana]
Length = 504
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 224/365 (61%), Gaps = 6/365 (1%)
Query: 38 LHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGN 96
LHS + GF S + T+L+ Y + + AR++FDE+ +R+ WN MI GY + G+
Sbjct: 97 LHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGD 156
Query: 97 VCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLS 156
+ A + F+ MP +NV SW+ +I+ + G Y LK+F M ++ + P+ +T+ +VL
Sbjct: 157 MKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLP 216
Query: 157 GCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFE-LMEERN 215
C++LG L +G+ G+ +N + N + ++MY+KCG + A +FE L +RN
Sbjct: 217 ACANLGE--LEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRN 274
Query: 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275
+ SW ++I A G ++AL+LF M G KP+ +TF G+L ACVH G+V +G++ FK
Sbjct: 275 LCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFK 334
Query: 276 MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQF 335
++E + + P+++HYGCM+DL G+ G L+EAY++I+TM ++P+ ++WG+ L AC H
Sbjct: 335 SMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHGNV 394
Query: 336 DMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++AE + +AL ++P N G ++ ++Y NEKW+G R+RKLM + + KA G S
Sbjct: 395 EIAE-IASEALFKLEPTNPGNC-VIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYSYF 452
Query: 396 SSLSV 400
+ V
Sbjct: 453 VEVGV 457
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 121/290 (41%), Gaps = 11/290 (3%)
Query: 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP---LRNVASWSAM 118
++ + +ARKLFD +N +I+ Y E+ + + LR
Sbjct: 21 LIPNLVYARKLFDHHQNSCTFLYNKLIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNF 80
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I A + + L+L G D +++ + LG+ L + + K
Sbjct: 81 IFAASASFSSARPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGA--LCCARRVFDEMSK 138
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ + ++ Y + G +K A+ +F+ M +NV SWT +I G + G +AL +
Sbjct: 139 RDV----PVWNAMITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKM 194
Query: 239 FEMMQA-TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
F M+ VKPN +T VL AC + G ++ GR+ + E I ++++
Sbjct: 195 FLCMEKDKSVKPNHITVVSVLPACANLGELEIGRR-LEGYARENGFFDNIYVCNATIEMY 253
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALR 347
K G ++ A + + + N+ W S + + H + D A + Q LR
Sbjct: 254 SKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLR 303
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 84/175 (48%), Gaps = 12/175 (6%)
Query: 1 MQLFSQMHR-QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+++F M + +SV + +++ +L +C + L + L + + GF ++YV + +
Sbjct: 192 LKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIE 251
Query: 60 EYVVTS-FGFARKLFDEL-PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR-----NV 112
Y A++LF+EL +RN +WN+MI + G EA F +M LR +
Sbjct: 252 MYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQM-LREGEKPDA 310
Query: 113 ASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL 167
++ ++ A ++ G G +LF+ M ++P G ++ LG VG L
Sbjct: 311 VTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCMI---DLLGRVGKL 362
>gi|414873430|tpg|DAA51987.1| TPA: hypothetical protein ZEAMMB73_709752 [Zea mays]
Length = 536
Score = 274 bits (701), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 210/362 (58%), Gaps = 9/362 (2%)
Query: 38 LHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGN 96
+H+ I+ G + V+V+T L+ Y +R+LFD +P R+ V+WN M+ Y + N
Sbjct: 144 VHAIIVTSGIVPDVFVSTELIRVYGEYGELALSRRLFDAMPVRSTVSWNAMVHQYIRHSN 203
Query: 97 VCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEG--LTPDQMTIGAV 154
V +A + F MP R+V SW+ MIA Y G + L+L R+MIS + P+ T+ V
Sbjct: 204 VGDAYELFLAMPRRDVVSWNTMIAGYSLVGRFMEALELSRQMISPSSCPVYPNGPTMSTV 263
Query: 155 LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE- 213
L+ C+ G L G H F+ +N + + L+DMY KCG ++ AL VFE E
Sbjct: 264 LAACAGAGC--LETGIWVHAFVDRNRMNDDGSLDRSLIDMYVKCGSIEKALQVFEKAPEA 321
Query: 214 RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKY 273
R++ SWT +ICG A G + DAL +F MMQ G+ P+++T GVL AC H GLVDEG ++
Sbjct: 322 RDLYSWTTMICGLAMHGRAADALKMFGMMQDNGIHPDDVTLVGVLNACAHCGLVDEGLRH 381
Query: 274 FKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHK 333
F + E+Y + P+I+HYGC++DL G+ G L+EAY +IRTMR++PN +IWG+FL ACK H
Sbjct: 382 FYSL-EKYAITPKIEHYGCVIDLLGRVGRLQEAYNIIRTMRMKPNAVIWGAFLNACKVHS 440
Query: 334 QFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
++ E + R+ D ++ LY + W R R+ M N ++K G S
Sbjct: 441 NVELGEIAAAELTRL--DPGDPWAKVMLSSLYAKLQDWNSLARERREMNNLQIKKTPGCS 498
Query: 394 VI 395
I
Sbjct: 499 SI 500
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 76/318 (23%), Positives = 131/318 (41%), Gaps = 58/318 (18%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
++ Y+ G ARD F+ MP + S +AM A+ +G L +FR+MI+ +G+
Sbjct: 51 TALLSAYAALGRPRHARDLFDEMPDPGLVSRTAMARAHAASGQAAQALAVFRDMIA-DGV 109
Query: 145 TPDQMTIGAVLSGC---SHLGSVGLLM----GKSAHGFIVKNEWELNEQIATILVDMYAK 197
PD + + L+ C + L + G+ GK H IV + + ++T L+ +Y +
Sbjct: 110 LPDNVALAVALAACHTTASLPAAGMAAARRPGKMVHAIIVTSGIVPDVFVSTELIRVYGE 169
Query: 198 CGFLKYALMVFELMEERNVISWTALI--------CGSAHR------------------GY 231
G L + +F+ M R+ +SW A++ G A+ GY
Sbjct: 170 YGELALSRRLFDAMPVRSTVSWNAMVHQYIRHSNVGDAYELFLAMPRRDVVSWNTMIAGY 229
Query: 232 S-----EDALSLFEMM---QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDL 283
S +AL L M + V PN T + VL AC G ++ G +D
Sbjct: 230 SLVGRFMEALELSRQMISPSSCPVYPNGPTMSTVLAACAGAGCLETGIWVHAFVDRN--- 286
Query: 284 EPRIQHYG----CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAE 339
R+ G ++D++ K G +E+A +V ++ W + + H +
Sbjct: 287 --RMNDDGSLDRSLIDMYVKCGSIEKALQVFEKAPEARDLYSWTTMICGLAMHGR----- 339
Query: 340 RVIKQALRMVKPENDGGV 357
AL+M D G+
Sbjct: 340 --AADALKMFGMMQDNGI 355
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 162 GSVGLLMGKSAHGFIVKNEW-ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWT 220
G L HG + K + T L+ YA G ++A +F+ M + ++S T
Sbjct: 23 GPRAHLAAAEIHGLLFKEGLLHAGAHLPTALLSAYAALGRPRHARDLFDEMPDPGLVSRT 82
Query: 221 ALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
A+ A G + AL++F M A GV P+ + L AC HT
Sbjct: 83 AMARAHAASGQAAQALAVFRDMIADGVLPDNVALAVALAAC-HT 125
>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
Length = 1329
Score = 274 bits (701), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 149/428 (34%), Positives = 237/428 (55%), Gaps = 40/428 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++ + +M R SV S++ ++++ + L +HI K GF HV + T+L+
Sbjct: 863 LEFYVRMLRDSVSPSSYTYSSLVQASAFASGFG--ESLQAHIWKFGFGFHVQIQTTLIGF 920
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTM-------------------------------I 88
Y + ARK+FDE+PER+ VTW TM I
Sbjct: 921 YSASGRIREARKVFDEMPERDDVTWTTMVSAYRQVLDMDSANSLANQMPEKNEATWNCLI 980
Query: 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ 148
GY++ GN+ A F +MP++++ SW+ MI Y Y + +F +M+ EG+ PD+
Sbjct: 981 DGYTRLGNLELAESLFNQMPVKDIISWTTMINGYSRNKRYREAIAVFYKMM-EEGIIPDE 1039
Query: 149 MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVF 208
+T+ V+S C+HLG L +GK H + V+N + L+ I + LVDMY+KCG L+ AL+VF
Sbjct: 1040 VTMSTVISACAHLGV--LEIGKEVHMYTVQNGFVLDVYIGSALVDMYSKCGSLERALLVF 1097
Query: 209 ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
+ ++N+ W ++I G A G++++AL +F M+ VKPN +TF V TAC H GLV+
Sbjct: 1098 FNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNTVTFVSVFTACTHAGLVE 1157
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
EGR+ ++ + ++Y + ++HYGCMV LF KAG + EA E+I +M EPN +IWG+ L
Sbjct: 1158 EGRRIYRSMIDDYSIVSNVEHYGCMVHLFSKAGLIYEALELIGSMEFEPNAVIWGALLDG 1217
Query: 329 CKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRK 388
C+ HK ++AE + L +++P N G F L+ +Y +W +R M + K
Sbjct: 1218 CRIHKNLEIAEIAFNK-LMILEPMNSGYYFLLV-SMYAEQNRWRDVAEIRGRMRELGIEK 1275
Query: 389 -ARGSSVI 395
G+S I
Sbjct: 1276 ICPGTSSI 1283
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 74/342 (21%), Positives = 132/342 (38%), Gaps = 82/342 (23%)
Query: 79 RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM 138
+N N I S + A F +M NV ++A+I ++ L+ + M
Sbjct: 810 QNCYLMNQFITACSSFNRLDLAVSFMTQMQKPNVFVYNALIKGFVTCSHPIRSLEFYVRM 869
Query: 139 ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198
+ + ++P T +++ + G+S I K + + QI T L+ Y+
Sbjct: 870 L-RDSVSPSSYTYSSLVQASAFASG----FGESLQAHIWKFGFGFHVQIQTTLIGFYSAS 924
Query: 199 GFLKYALMVFELMEERNVISWTALICGSAHR----------------------------G 230
G ++ A VF+ M ER+ ++WT ++ SA+R G
Sbjct: 925 GRIREARKVFDEMPERDDVTWTTMV--SAYRQVLDMDSANSLANQMPEKNEATWNCLIDG 982
Query: 231 YS-----EDALSLFEMMQAT-------------------------------GVKPNEMTF 254
Y+ E A SLF M G+ P+E+T
Sbjct: 983 YTRLGNLELAESLFNQMPVKDIISWTTMINGYSRNKRYREAIAVFYKMMEEGIIPDEVTM 1042
Query: 255 TGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
+ V++AC H G+++ G++ + + + L+ I +VD++ K G LE A V +
Sbjct: 1043 STVISACAHLGVLEIGKEVHMYTVQNGFVLDVYIG--SALVDMYSKCGSLERALLVFFNL 1100
Query: 314 RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM----VKP 351
+ N+ W S + H A+ +K +M VKP
Sbjct: 1101 P-KKNLFCWNSIIEGLAAH---GFAQEALKMFAKMEMESVKP 1138
>gi|356561772|ref|XP_003549152.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Glycine max]
Length = 522
Score = 274 bits (701), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 150/400 (37%), Positives = 231/400 (57%), Gaps = 13/400 (3%)
Query: 1 MQLFSQMHRQSVP-SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+ LF M R P + F H LK+C LH+ I+K GF + V T+L+
Sbjct: 91 LSLFRHMLRSQPPRPNHFIFPHALKTCP---ESCAAESLHAQIVKSGFHEYPVVQTALVD 147
Query: 60 EY--VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
Y V G A+K+FDE+ +R+ V++ M+ G+++ G+V A F M R+V SW+A
Sbjct: 148 SYSKVSGGLGNAKKVFDEMSDRSVVSFTAMVSGFARVGDVESAVRVFGEMLDRDVPSWNA 207
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
+IA GA+ G++LFR M+ E P+ +T+ LS C H+G L +G+ HG++
Sbjct: 208 LIAGCTQNGAFTQGIELFRRMVF-ECNRPNGVTVVCALSACGHMGM--LQLGRWIHGYVY 264
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
KN + + LVDMY KCG L A VFE+ E+ + SW ++I A G S+ A++
Sbjct: 265 KNGLAFDSFVLNALVDMYGKCGSLGKARKVFEMNPEKGLTSWNSMINCFALHGQSDSAIA 324
Query: 238 LFEMM--QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
+FE M GV+P+E+TF G+L AC H GLV++G YF+M+ +EY +EP+I+HYGC++D
Sbjct: 325 IFEQMVEGGGGVRPDEVTFVGLLNACTHGGLVEKGYWYFEMMVQEYGIEPQIEHYGCLID 384
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
L G+AG +EA +V++ M +EP+ ++WGS L CK H + D+AE K+ + + P N G
Sbjct: 385 LLGRAGRFDEAMDVVKGMSMEPDEVVWGSLLNGCKVHGRTDLAEFAAKKLIE-IDPHN-G 442
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G ++ ++Y KW+ V + + Q K G S I
Sbjct: 443 GYRIMLANVYGELGKWDEVRNVWRTLKQQKSYKVPGCSWI 482
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 119/295 (40%), Gaps = 45/295 (15%)
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDP-GLKLFREMISNEGLTPDQMTIGAV 154
N+ AR F+ +P N ++AMI AY A P L LFR M+ ++ P+
Sbjct: 54 NLTYARLIFDHIPSLNTHLFTAMITAYAAHPATHPSALSLFRHMLRSQPPRPNHFIFPHA 113
Query: 155 LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY------------------- 195
L C + +S H IVK+ + + T LVD Y
Sbjct: 114 LKTCPESCAA-----ESLHAQIVKSGFHEYPVVQTALVDSYSKVSGGLGNAKKVFDEMSD 168
Query: 196 -------------AKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
A+ G ++ A+ VF M +R+V SW ALI G G + LF M
Sbjct: 169 RSVVSFTAMVSGFARVGDVESAVRVFGEMLDRDVPSWNALIAGCTQNGAFTQGIELFRRM 228
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
+PN +T L+AC H G++ GR + + L +VD++GK G
Sbjct: 229 VFECNRPNGVTVVCALSACGHMGMLQLGRWIHGYVYKN-GLAFDSFVLNALVDMYGKCGS 287
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
L +A +V M E + W S + H Q D A + +Q + E GGV
Sbjct: 288 LGKARKVFE-MNPEKGLTSWNSMINCFALHGQSDSAIAIFEQMV-----EGGGGV 336
>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 598
Score = 274 bits (701), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 134/358 (37%), Positives = 216/358 (60%), Gaps = 7/358 (1%)
Query: 38 LHSHILKLGFISHVYVATSLL--HEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSG 95
+H+H ++LG + V +L+ H ++ A L +A T+NT+I ++++G
Sbjct: 114 VHAHAVRLGLAGFLLVNNALIRVHAGLLGRLADAHLLLRTSAAVDASTFNTLITAHARAG 173
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155
V +AR F+ MP RN SWSAM+ Y+ AG L +F +M +G+ PD + VL
Sbjct: 174 RVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQM-QAQGVRPDDTVLVGVL 232
Query: 156 SGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERN 215
+ C+ LG+ L GK HG++ N + + T LVDMYAKCG ++ + VFE M+++N
Sbjct: 233 AACAQLGA--LEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKN 290
Query: 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275
V++WT +I G A G D+L+LF M+++GVKP+++ F G L AC HTGLVD+GR+ F
Sbjct: 291 VLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFN 350
Query: 276 MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQF 335
+ Y ++P+I+HYGCMVDL + G L EA +++ M ++P+ +IWG+ +A C+ HK
Sbjct: 351 SMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFHKNV 410
Query: 336 DMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
++AE VIK + + +P+ G + L+ ++Y+ + + A +R LM + V K G S
Sbjct: 411 ELAEYVIKHWIEL-EPDKSGA-YVLLGNIYSASGRHASAREIRNLMREKGVEKTPGCS 466
>gi|293332303|ref|NP_001170755.1| uncharacterized protein LOC100384848 [Zea mays]
gi|238007354|gb|ACR34712.1| unknown [Zea mays]
Length = 464
Score = 274 bits (701), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 210/362 (58%), Gaps = 9/362 (2%)
Query: 38 LHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGN 96
+H+ I+ G + V+V+T L+ Y +R+LFD +P R+ V+WN M+ Y + N
Sbjct: 72 VHAIIVTSGIVPDVFVSTELIRVYGEYGELALSRRLFDAMPVRSTVSWNAMVHQYIRHSN 131
Query: 97 VCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEG--LTPDQMTIGAV 154
V +A + F MP R+V SW+ MIA Y G + L+L R+MIS + P+ T+ V
Sbjct: 132 VGDAYELFLAMPRRDVVSWNTMIAGYSLVGRFMEALELSRQMISPSSCPVYPNGPTMSTV 191
Query: 155 LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE- 213
L+ C+ G L G H F+ +N + + L+DMY KCG ++ AL VFE E
Sbjct: 192 LAACAGAGC--LETGIWVHAFVDRNRMNDDGSLDRSLIDMYVKCGSIEKALQVFEKAPEA 249
Query: 214 RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKY 273
R++ SWT +ICG A G + DAL +F MMQ G+ P+++T GVL AC H GLVDEG ++
Sbjct: 250 RDLYSWTTMICGLAMHGRAADALKMFGMMQDNGIHPDDVTLVGVLNACAHCGLVDEGLRH 309
Query: 274 FKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHK 333
F + E+Y + P+I+HYGC++DL G+ G L+EAY +IRTMR++PN +IWG+FL ACK H
Sbjct: 310 FYSL-EKYAITPKIEHYGCVIDLLGRVGRLQEAYNIIRTMRMKPNAVIWGAFLNACKVHS 368
Query: 334 QFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
++ E + R+ D ++ LY + W R R+ M N ++K G S
Sbjct: 369 NVELGEIAAAELTRL--DPGDPWAKVMLSSLYAKLQDWNSLARERREMNNLQIKKTPGCS 426
Query: 394 VI 395
I
Sbjct: 427 SI 428
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 121/296 (40%), Gaps = 58/296 (19%)
Query: 107 MPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGC---SHLGS 163
MP + S +AM A+ +G L +FR+MI+ +G+ PD + + L+ C + L +
Sbjct: 1 MPDPGLVSRTAMARAHAASGQAAQALAVFRDMIA-DGVLPDNVALAVALAACHTTASLPA 59
Query: 164 VGLLM----GKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISW 219
G+ GK H IV + + ++T L+ +Y + G L + +F+ M R+ +SW
Sbjct: 60 AGMAAARRPGKMVHAIIVTSGIVPDVFVSTELIRVYGEYGELALSRRLFDAMPVRSTVSW 119
Query: 220 TALI--------CGSAHR------------------GYS-----EDALSLFEMM---QAT 245
A++ G A+ GYS +AL L M +
Sbjct: 120 NAMVHQYIRHSNVGDAYELFLAMPRRDVVSWNTMIAGYSLVGRFMEALELSRQMISPSSC 179
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG----CMVDLFGKAG 301
V PN T + VL AC G ++ G +D R+ G ++D++ K G
Sbjct: 180 PVYPNGPTMSTVLAACAGAGCLETGIWVHAFVDRN-----RMNDDGSLDRSLIDMYVKCG 234
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
+E+A +V ++ W + + H + AL+M D G+
Sbjct: 235 SIEKALQVFEKAPEARDLYSWTTMICGLAMHGR-------AADALKMFGMMQDNGI 283
>gi|242065790|ref|XP_002454184.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
gi|241934015|gb|EES07160.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
Length = 530
Score = 274 bits (701), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 140/387 (36%), Positives = 224/387 (57%), Gaps = 6/387 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF +M R P+ + + ++ + ++ +HSH K GF H + TS+L Y
Sbjct: 106 LFLRMLRHGRPAPNQFVYPLVLRAASGVGVGIVKSIHSHACKSGFCGHDIIRTSVLDGYS 165
Query: 63 VTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
ARKLFD L ERN V+W ++ GY+++G V +A FERMP R+VA+W+A+IA
Sbjct: 166 RHGMMADARKLFDGLTERNVVSWTALVSGYARAGKVGDAIVLFERMPERDVAAWNAIIAG 225
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
G + + +F M+ G P+ T+ VLS C HLG L +GK H + +
Sbjct: 226 CSQNGLFVEAVGIFGRMV-GAGFRPNATTVSCVLSACGHLGM--LKIGKLIHCYAWRTCV 282
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ L+DMY KCG L+ A +F+ + +R++ +W +LI A G+S+ A+S+F
Sbjct: 283 GFGSSVLNGLIDMYGKCGNLEGARWIFDEVSDRSLTTWNSLINCLALHGHSKCAISVFNE 342
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M+ GV+P+ +TF G+L AC H G VDEG +YF+++ E+ +EP I+HYGC++DL G+AG
Sbjct: 343 MRGEGVEPDVVTFVGLLNACTHGGFVDEGIRYFELMQHEHGIEPEIEHYGCIIDLLGRAG 402
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
++A VI MR+E + ++WGS L AC+ H+Q + AE I++ L + N+ ++
Sbjct: 403 RFQDALNVISDMRIEADEVMWGSLLNACRVHRQVEFAELAIRKLLEL--DPNNANYVVML 460
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRK 388
++Y+ WE +VRK + +N+ K
Sbjct: 461 ANVYSEGGLWEEVRKVRKFVKEENIGK 487
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 77/343 (22%), Positives = 131/343 (38%), Gaps = 58/343 (16%)
Query: 35 IHHLHSHILKLGFISHVYVATSLLH--EYVVTSFGFARKLFDELPERNAVTWNTMIKGYS 92
+ LH+H G + L+ + ++ +AR LFD P + ++ ++ Y
Sbjct: 25 LEQLHAHAFVAGRAAAQTTTFHLIRFAAFRLSCLTYARHLFDATPHPSVFLYSAILSAYV 84
Query: 93 KSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIG 152
+ + + L LF M+ + P+Q
Sbjct: 85 SAA--------------------ATASSYAHAHAHARDALALFLRMLRHGRPAPNQFVYP 124
Query: 153 AVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME 212
VL S +G VG++ KS H K+ + ++ I T ++D Y++ G + A +F+ +
Sbjct: 125 LVLRAASGVG-VGIV--KSIHSHACKSGFCGHDIIRTSVLDGYSRHGMMADARKLFDGLT 181
Query: 213 ERNVISWTALICGSAHRGYSEDALSLFEMMQ----------------------------- 243
ERNV+SWTAL+ G A G DA+ LFE M
Sbjct: 182 ERNVVSWTALVSGYARAGKVGDAIVLFERMPERDVAAWNAIIAGCSQNGLFVEAVGIFGR 241
Query: 244 --ATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
G +PN T + VL+AC H G++ G K + ++D++GK G
Sbjct: 242 MVGAGFRPNATTVSCVLSACGHLGMLKIG-KLIHCYAWRTCVGFGSSVLNGLIDMYGKCG 300
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
LE A + + + ++ W S + H A V +
Sbjct: 301 NLEGARWIFDEVS-DRSLTTWNSLINCLALHGHSKCAISVFNE 342
>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 634
Score = 274 bits (700), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 141/394 (35%), Positives = 231/394 (58%), Gaps = 6/394 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY- 61
LF +M RQ V +D F+ + +L C+ NL V +H H+L G + + +L+ Y
Sbjct: 196 LFREMRRQGVLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLASGSRVDLILGNALVDMYG 255
Query: 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
A + FD +P +N V+W +M+ +K G+V ARD+FE+MP RN+ SW+AMI+
Sbjct: 256 KCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKHGSVDAARDWFEQMPERNIISWNAMISC 315
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ G + L L+ M S GLTPD++T+ VLS H + L G+ H +I +
Sbjct: 316 YVQGGRFPETLGLYNRMKS-LGLTPDEVTLAGVLS--VHGQNGDLASGRMIHCYIQDSFS 372
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ + L+DMYA+CG + ++ +F M +N ISW +I A G +++A+ F
Sbjct: 373 DPGVTVLNSLIDMYARCGQVDTSISLFTEMPNKNTISWNVIIGALAMHGRAQEAVMFFRA 432
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M + P+E+TF G+L+AC H GL+++G+ YFK + Y+++P ++HY CMVDL G+ G
Sbjct: 433 MVSDAFSPDEITFVGLLSACSHGGLLEDGQYYFKAMRHIYNVKPEVEHYACMVDLLGRHG 492
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L +A ++I+ M ++P+V++WG+ + AC+ H ++ + IKQ L + +GG+F LI
Sbjct: 493 HLAKAVDLIKDMPMKPDVVVWGALIGACRIHGHVEIGKLAIKQLLEL--EGINGGLFVLI 550
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+L +WE +R+RKLM ++ +K G S I
Sbjct: 551 SNLLYETRQWEDMKRLRKLMRDRGTKKDMGVSSI 584
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 93/358 (25%), Positives = 155/358 (43%), Gaps = 43/358 (12%)
Query: 19 ILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPE 78
+L +L+ C +L LH+H+L G + V L+ Y S
Sbjct: 6 VLELLQQCRSIRHLD---QLHAHLLAHGPSAVASVVPQLVASYCALS------------- 49
Query: 79 RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM 138
G + +C AR F+R+P + +++++I AY N+G L L R++
Sbjct: 50 -----------GRAGDVALCHARRMFDRVPDPDRFAYNSLIRAYSNSGCPQEALCLHRDV 98
Query: 139 ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198
+ G+ P++ T+ VL CS + + + HG +K + + L+ A
Sbjct: 99 L-RRGILPNEFTLPFVLKACSRARAAEHAL--ATHGVAIKLGYVRQVFVGNALLHSSASA 155
Query: 199 GFLKYALMVF-ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGV 257
G L+ + +F E+ RNV+SW +I G A G + +A +LF M+ GV + TF +
Sbjct: 156 GSLRDSRRLFAEMAPHRNVVSWNTMIGGCAQAGETSEACALFREMRRQGVLADVFTFVSL 215
Query: 258 LTACVHTGLVDEGR-KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE 316
L C G ++ GR + M+ ++ + + +VD++GK G L A+ M ++
Sbjct: 216 LLVCSKEGNLEVGRLVHCHMLASGSRVDLILGN--ALVDMYGKCGDLWMAHRCFDVMPIK 273
Query: 317 PNVIIWGSFLAACKEHKQFD--------MAERVIKQALRMVKPENDGGVFTLICDLYT 366
NV+ W S L A +H D M ER I M+ GG F LY
Sbjct: 274 -NVVSWTSMLCALAKHGSVDAARDWFEQMPERNIISWNAMISCYVQGGRFPETLGLYN 330
>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
Length = 547
Score = 274 bits (700), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 142/383 (37%), Positives = 226/383 (59%), Gaps = 7/383 (1%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLF 73
D F+ +LK+C + +H+H+ + G SH V SL+ Y ARK+F
Sbjct: 116 DRFTYPFLLKACGGLAASQLGRQVHAHVARSGCESHAIVQNSLIEMYTRCGDLSLARKVF 175
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
D + E++AV+WNT+I +++ G + +AR+ F MP + V SW+A+++ Y G + ++
Sbjct: 176 DGMREKDAVSWNTLISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAGAVE 235
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
+FR+M EG PD ++I AVL C+ LG+ L +G+ + + K+ I L++
Sbjct: 236 VFRQM-QMEGFEPDDVSIVAVLPACAQLGA--LELGRWIYAYCNKHGMLGKIYICNALME 292
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG-VKPNEM 252
MYAKCG ++ AL +F M E++VISW+ I G A G + +A+ LFE+M G V PN +
Sbjct: 293 MYAKCGCIEEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVKLFEVMDREGRVMPNGI 352
Query: 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312
TF G+L+AC H GL+DEG +YF + EEY +EP ++HYGC+VDL G++G ++ A + I
Sbjct: 353 TFVGLLSACSHAGLLDEGLRYFDRMKEEYGVEPSVEHYGCVVDLLGRSGRIQRALDTIGG 412
Query: 313 MRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWE 372
M + P+ IWGS L+AC+ H D A V + L ++PE D G ++ ++Y +W
Sbjct: 413 MPIPPDGKIWGSLLSACRSHSDVDTAV-VAAERLVELEPE-DVGNLVMLANVYAAAGRWG 470
Query: 373 GAERVRKLMLNQNVRKARGSSVI 395
RK + +++ RK G S+I
Sbjct: 471 NVASTRKEIRSRSTRKTPGCSMI 493
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 84/346 (24%), Positives = 148/346 (42%), Gaps = 66/346 (19%)
Query: 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDELPER 79
L++C F +L H L ++L YVAT ++H V G A ++F +P
Sbjct: 17 LRACATFRDLLRAHGL---AVRLCLSQSSYVATQIVH--VCNGHGRAAHAARVFAHVPAP 71
Query: 80 NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI 139
N N MIK Y+++ +A + + RM LR + S ++G + G
Sbjct: 72 NLHLHNAMIKAYAQNHLHRDAVEVYVRM-LRCLPDPS-------SSGGFSVG-------- 115
Query: 140 SNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG 199
D+ T +L C L + L G+ H + ++ E + + L++MY +CG
Sbjct: 116 -------DRFTYPFLLKACGGLAASQL--GRQVHAHVARSGCESHAIVQNSLIEMYTRCG 166
Query: 200 FLKYALMVFELMEERN-------------------------------VISWTALICGSAH 228
L A VF+ M E++ V+SWTAL+ G
Sbjct: 167 DLSLARKVFDGMREKDAVSWNTLISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYTA 226
Query: 229 RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQ 288
G A+ +F MQ G +P++++ VL AC G ++ GR + + ++ + +I
Sbjct: 227 VGDFAGAVEVFRQMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCN-KHGMLGKIY 285
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
+++++ K G +EEA ++ M E +VI W + + H +
Sbjct: 286 ICNALMEMYAKCGCIEEALQLFHGMS-EKDVISWSTAIGGLAAHGR 330
>gi|225453406|ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
[Vitis vinifera]
gi|297734603|emb|CBI16654.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 274 bits (700), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 146/327 (44%), Positives = 207/327 (63%), Gaps = 5/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
ARKLFDE+PER+ V+W MI GYS +GN+ AR F+ MP +N+ SW+AMI+ Y
Sbjct: 204 ARKLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYRQNKQP 263
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
LKLF EM S L PD++TI +VL + LG++ L G H F+ + + + +
Sbjct: 264 YEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDL--GGWVHRFVRRKKLDRATNVG 321
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
T L+DMYAKCG + + VF+ M E+ SW ALI A G +++AL LF M G
Sbjct: 322 TALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFM 381
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
PNE+T GVL+AC H+GLV+EG+++FK + EE+ L P+I+HYGCMVDL G+AG L+EA +
Sbjct: 382 PNEITMIGVLSACNHSGLVEEGKRWFKAM-EEFGLTPKIEHYGCMVDLLGRAGCLQEAEK 440
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
++ +M E N II SFL AC K AERV+K+A++M + NDG + ++ +LY
Sbjct: 441 LMESMPYEANGIILSSFLFACGYSKDVARAERVLKEAIKM-EAWNDGN-YIMLRNLYANE 498
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
++W+ A+ V+ LM V+K G S I
Sbjct: 499 KRWKEADEVKGLMRRNGVKKEAGCSAI 525
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 138/328 (42%), Gaps = 45/328 (13%)
Query: 3 LFSQMHRQ-SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
L+ + R S DSF+ + KSC + +HSH++ +GF +Y AT+L
Sbjct: 74 LYRDLRRNTSFTPDSFTFSVLAKSCALNMAIWEGQEIHSHVVAVGFCLDLYAATAL---- 129
Query: 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+ Y+K G + AR F+ M R+ SW+A+I
Sbjct: 130 --------------------------VDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGG 163
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ +G D KLF +MI + + M V G + S L + +V W
Sbjct: 164 YVRSGDMDNAGKLFDQMIEKDSAAFNTMIDAYVKLG--DMCSARKLFDEMPERSVV--SW 219
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF-E 240
TI++ Y+ G L A +F+ M E+N+ SW A+I G +AL LF E
Sbjct: 220 -------TIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYRQNKQPYEALKLFHE 272
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M T ++P+E+T VL A G +D G + + + L+ ++D++ K
Sbjct: 273 MQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRK-KLDRATNVGTALIDMYAKC 331
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
G + ++ V M E W + + A
Sbjct: 332 GEIVKSRGVFDNMP-EKETASWNALINA 358
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 115/245 (46%), Gaps = 13/245 (5%)
Query: 91 YSKSGNVCEARDFFERMPLRNVASW-SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQM 149
Y + AR F+ P R+ A ++MI AY+ Y L+R++ N TPD
Sbjct: 30 YDPLAGIVHARRMFDHRPHRDDAFLCNSMIKAYVGMRQYSESFALYRDLRRNTSFTPDSF 89
Query: 150 TIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFE 209
T + C+ ++ + G+ H +V + L+ AT LVDMYAK G + A +F+
Sbjct: 90 TFSVLAKSCAL--NMAIWEGQEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDCARKLFD 147
Query: 210 LMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
M +R+ +SWTALI G G ++A LF+ M ++ + F ++ A V G +
Sbjct: 148 EMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQM----IEKDSAAFNTMIDAYVKLGDMCS 203
Query: 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAAC 329
RK F + E + I YG + G L+ A + M E N+ W + ++
Sbjct: 204 ARKLFDEMPERSVVSWTIMIYG-----YSSNGNLDSARSLFDAMP-EKNLFSWNAMISGY 257
Query: 330 KEHKQ 334
+++KQ
Sbjct: 258 RQNKQ 262
>gi|255578276|ref|XP_002530005.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530484|gb|EEF32367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 499
Score = 274 bits (700), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 144/404 (35%), Positives = 241/404 (59%), Gaps = 12/404 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCT------HFNNLTVIHHLHSHILKLGFISHVYVA 54
+ LF+QM + V D F+ ++K+ + +F + +H + K GF SH++V
Sbjct: 101 VNLFNQMRQNHVDPDEFTFNFLIKARSRVHKVHNFPSTLECDEIHGAVFKYGFCSHLFVQ 160
Query: 55 TSLLHEYVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA 113
+L++ Y V S A ++F+E + V+W+ ++ + + G + AR F+ MP ++V
Sbjct: 161 NALINLYAVKGSPAAAWRVFNETVGVDVVSWSGLVLAHVRGGELELARQVFDDMPEKDVV 220
Query: 114 SWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH 173
SW+AM++ Y A L+LF EM S+ G+ PD++TI +V+S C++LG V G + H
Sbjct: 221 SWTAMVSGYSKANCSREALELFWEM-SDAGIRPDEVTIVSVISACTNLGDVE--TGMNVH 277
Query: 174 GFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE 233
+I +N + + L++MYAKCG + A VF M+ +++I+W ++I A+ GY+E
Sbjct: 278 SYINENGFGWMVSLCNALINMYAKCGCVDRAWRVFNNMKRKSLITWNSMISACANHGYAE 337
Query: 234 DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293
DA LF M +G+ P+ +TF +L A H GLVDEG + F++++ +Y +E I+HYGC+
Sbjct: 338 DAFELFSCMLNSGIAPDGITFLALLIAYTHKGLVDEGYRLFQIMERDYGIEASIEHYGCI 397
Query: 294 VDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353
VD+ G+AG LEEAYE+I TM + N I+WG+ LAAC+ + +M ERV+K+ L + KP+
Sbjct: 398 VDMLGRAGRLEEAYELIVTMPIPSNDIVWGALLAACRIYGDVNMGERVVKKLLEL-KPD- 455
Query: 354 DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
+GG + L+ D+Y + + A +R+ M K G S + +
Sbjct: 456 EGGYYILLRDIYVASGRTAEANHIRQAMQESGAMKNPGYSWVGA 499
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 94/355 (26%), Positives = 165/355 (46%), Gaps = 45/355 (12%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
MQL Q + + + + + I ++C N+L +H+H L +H + +L
Sbjct: 1 MQLSVQQQCKPILALASILASIAENCQSMNHLK---QIHAHSLLTDLHNHSVILGKMLRF 57
Query: 61 YVVTSFG---FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
V+ G +A++LFD++P+ N +NT+I+GY+KS + + F +M +V
Sbjct: 58 AAVSPSGDLPYAQRLFDQMPQPNTFFYNTIIRGYAKSSSPSYCVNLFNQMRQNHV----- 112
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEG-----------LTPDQMTIGAVLSG--CSHLGSV 164
DP F +I L D++ GAV CSHL
Sbjct: 113 -----------DPDEFTFNFLIKARSRVHKVHNFPSTLECDEIH-GAVFKYGFCSHLFVQ 160
Query: 165 GLLM------GKSAHGFIVKNEWELNEQIA-TILVDMYAKCGFLKYALMVFELMEERNVI 217
L+ G A + V NE + ++ + LV + + G L+ A VF+ M E++V+
Sbjct: 161 NALINLYAVKGSPAAAWRVFNETVGVDVVSWSGLVLAHVRGGELELARQVFDDMPEKDVV 220
Query: 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI 277
SWTA++ G + S +AL LF M G++P+E+T V++AC + G V+ G I
Sbjct: 221 SWTAMVSGYSKANCSREALELFWEMSDAGIRPDEVTIVSVISACTNLGDVETGMNVHSYI 280
Query: 278 DEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
+E + +++++ K G ++ A+ V M+ ++I W S ++AC H
Sbjct: 281 NEN-GFGWMVSLCNALINMYAKCGCVDRAWRVFNNMK-RKSLITWNSMISACANH 333
>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
Length = 531
Score = 274 bits (700), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 147/440 (33%), Positives = 246/440 (55%), Gaps = 47/440 (10%)
Query: 1 MQLFSQMHRQS------VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVA 54
+ ++++M R S V D + +L++C +H+H++K G S +V
Sbjct: 93 VSIYARMARHSAGCGGGVRPDKRTFPFVLRACAAMGASETGAQVHAHVVKAGCESDAFVR 152
Query: 55 TSLLHEY--------------------------VVTSF------GFARKLFDELPERNAV 82
+L+ + +++ F G AR+LFDE P ++ V
Sbjct: 153 NALIGMHATCGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAARELFDESPVKDLV 212
Query: 83 TWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNE 142
+WN MI Y+K G++ AR+ F+ P R+V SW+AMI+ Y+ G++ ++LF +M +
Sbjct: 213 SWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSHKQAMELFEQMQAM- 271
Query: 143 GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ--IATILVDMYAKCGF 200
G PD +T+ ++LS C+ G + G+ H F+ + + L+DMYAKCG
Sbjct: 272 GEKPDTVTMLSLLSACADSGDMD--AGRRLHRFLSGRFSRIGPSTVLGNALIDMYAKCGS 329
Query: 201 LKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260
+ AL VF LM+++NV +W ++I G A G+ +A+ +F+ M VKP+E+TF VL A
Sbjct: 330 MTSALEVFWLMQDKNVSTWNSIIGGLALHGHVTEAIDVFQKMLQGNVKPDEITFVAVLVA 389
Query: 261 CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVI 320
C H G+VD+G +YF ++ + Y +EP ++HYGCMVD+ +AG L+EA+E I TM++EPN +
Sbjct: 390 CSHGGMVDKGHEYFNLMQQRYMIEPNVKHYGCMVDMLSRAGLLKEAFEFIGTMKIEPNPV 449
Query: 321 IWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG-GVFTLICDLYTMNEKWEGAERVRK 379
IW + L AC+ H + ++AE ++ ++K +D G F L+ ++Y +W G+E +RK
Sbjct: 450 IWRTLLGACRIHGELELAEHANQE---LLKARSDASGDFVLLSNIYASVGEWLGSENMRK 506
Query: 380 LMLNQNVRKARGSSVISSLS 399
LM + V K G +V+ S
Sbjct: 507 LMDDSGVNKEAGCAVVDGSS 526
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 88/362 (24%), Positives = 159/362 (43%), Gaps = 42/362 (11%)
Query: 31 NLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDELPERNAVTWNTM 87
+L I +H+ ++ GF+S L+ V G AR +FD +P + +NT+
Sbjct: 20 SLRQIKQVHALMVLRGFLSDPSALRELIFASSVGVRGGTAHARLVFDRIPHPDRFMYNTL 79
Query: 88 IKGYSKSGNVCEARDFFERMPLRNVA----------SWSAMIAAYLNAGAYDPGLKLFRE 137
I+G + S +A + RM + ++ ++ A GA + G ++
Sbjct: 80 IRGAAHSYAPRDAVSIYARMARHSAGCGGGVRPDKRTFPFVLRACAAMGASETGAQVHAH 139
Query: 138 MISNEGLTPDQMTIGAVL---SGCSHLGSVGLLMGKSAH-----------GFIVK----- 178
++ G D A++ + C LG+ L A GF +
Sbjct: 140 VV-KAGCESDAFVRNALIGMHATCGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGA 198
Query: 179 -----NEWELNEQIA-TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
+E + + ++ +++ YAK G + A +F+ +R+V+SW A+I G G
Sbjct: 199 ARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSH 258
Query: 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD-LEPRIQHYG 291
+ A+ LFE MQA G KP+ +T +L+AC +G +D GR+ + + + + P
Sbjct: 259 KQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDMDAGRRLHRFLSGRFSRIGPSTVLGN 318
Query: 292 CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALR-MVK 350
++D++ K G + A EV M+ + NV W S + H A V ++ L+ VK
Sbjct: 319 ALIDMYAKCGSMTSALEVFWLMQ-DKNVSTWNSIIGGLALHGHVTEAIDVFQKMLQGNVK 377
Query: 351 PE 352
P+
Sbjct: 378 PD 379
>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 1467
Score = 274 bits (700), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 143/382 (37%), Positives = 232/382 (60%), Gaps = 7/382 (1%)
Query: 9 RQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS-FG 67
RQ + D+F +LK+C LH+ +++ GF H YV T+L++ YV++
Sbjct: 472 RQHLADDTFVFTFVLKACAGLGWHRAGAQLHALVVQKGFEFHAYVHTALINVYVMSRCLV 531
Query: 68 FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
ARK+FDE+P +N V+WN MI G++ G V AR F++MP RNV SW+ +I Y A
Sbjct: 532 EARKVFDEMPVKNVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACL 591
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
Y L L R M++ G++P ++T+ AV+ S+LG G+LMG+ +G+ K + ++
Sbjct: 592 YAEALTLLRHMMAG-GISPSEITVLAVIPAISNLG--GILMGEMLNGYCEKKGIMSDARV 648
Query: 188 ATILVDMYAKCGFLKYALMVF-ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
L+D+YAK G ++ +L VF E+++ RN++SWT++I G A G S +AL LF M+ G
Sbjct: 649 GNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAG 708
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
+KPN +TF V+ AC H GLV++G +FK + EY+++P I+H+GC++D+ G+AG L EA
Sbjct: 709 IKPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEA 768
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366
++I + +E NV +W L C ++ + M ER IK + + GG F ++ ++ T
Sbjct: 769 EQIIEGLPMEVNVTVWRILLGCCSKYGEVAMGERAIKMISDLER--ESGGDFAVLSNVLT 826
Query: 367 MNEKWEGAERVRKLMLNQNVRK 388
++ AE+ RKL+ + + K
Sbjct: 827 ELGRFSDAEQARKLLDQRKIVK 848
Score = 263 bits (673), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 133/387 (34%), Positives = 225/387 (58%), Gaps = 6/387 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF M + V +D +++ ++ +CTH + ++ + +I VY+ +L+
Sbjct: 1026 LTLFKLMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIEHNHIEVDVYLGNTLIDY 1085
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + A K+F ++ ++N VT N MI Y+K GN+ A+ F+++P +++ SWS+MI
Sbjct: 1086 YCRIGQLQSAEKVFSQMKDKNTVTLNAMITAYAKGGNLVSAKKIFDQIPNKDLISWSSMI 1145
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
AY A + L+LFR+M + PD + I +VLS C+HLG++ L GK H ++ +N
Sbjct: 1146 CAYSQASHFSDSLELFRQM-QRAKVKPDAVVIASVLSACAHLGALDL--GKWIHDYVRRN 1202
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + + L+DM+AKCG ++ AL VF MEE++ +SW ++I G A+ G+ ++AL +F
Sbjct: 1203 NIKADTIMENSLIDMFAKCGCVQEALQVFTDMEEKDTLSWNSIILGLANNGFEDEALDIF 1262
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M G +PNE+TF GVL AC + LV+EG +F+ + ++LEP+++HYGC+VD+ +
Sbjct: 1263 HSMLTEGPRPNEVTFLGVLIACANRQLVEEGLDHFERMKSVHNLEPQMKHYGCVVDILSR 1322
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG LE+A I M L P+ ++W L AC+ H +AE K+ L + P N
Sbjct: 1323 AGQLEKAVSFISEMPLAPDPVVWRILLGACRTHGNVAVAEMATKK-LSELDPGNSADSM- 1380
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNV 386
L+ ++Y ++W A VR+ + V
Sbjct: 1381 LLSNIYASADRWSDAMNVRRWTADNAV 1407
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/355 (23%), Positives = 153/355 (43%), Gaps = 66/355 (18%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+ + + + D+ + +LK+C +H+H++KLGF+ ++V+ SL++ Y
Sbjct: 927 FYKKAQEKGMKPDNLTFPFVLKACAKTCAPKEGEQMHNHVIKLGFLLDIFVSNSLIYLY- 985
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
+ G + AR F M +++V SW+++I Y
Sbjct: 986 -----------------------------AACGALACARSVFNEMLVKDVVSWNSLIGGY 1016
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
L LF+ M + E + D++T+ V+S C+HLG M +I N E
Sbjct: 1017 SQHNRLKEVLTLFKLMQAEE-VQADKVTMVKVISACTHLGDWS--MADCMVRYIEHNHIE 1073
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERN--------------------------- 215
++ + L+D Y + G L+ A VF M+++N
Sbjct: 1074 VDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMITAYAKGGNLVSAKKIFDQI 1133
Query: 216 ----VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR 271
+ISW+++IC + + D+L LF MQ VKP+ + VL+AC H G +D G
Sbjct: 1134 PNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLG- 1192
Query: 272 KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
K+ +++ ++D+F K G ++EA +V M E + + W S +
Sbjct: 1193 KWIHDYVRRNNIKADTIMENSLIDMFAKCGCVQEALQVFTDME-EKDTLSWNSII 1246
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/315 (21%), Positives = 141/315 (44%), Gaps = 38/315 (12%)
Query: 32 LTVIHHLHSHILKLGFISHVYVATSLLHEYVV--TSFGFARKLFDELPERNAVTWNTMIK 89
+ + LH+H++ G + Y + ++ Y + + A K+F ++ WNT+++
Sbjct: 854 MEAVKKLHAHLVVSGLHNCQYAMSKVIRLYALHQSDLVSAHKVFKQIESPTTFLWNTLLR 913
Query: 90 GYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQM 149
G ++S +A F+++ +G+ PD +
Sbjct: 914 GLAQSDAPKDAIVFYKKA--------------------------------QEKGMKPDNL 941
Query: 150 TIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFE 209
T VL C+ + G+ H ++K + L+ ++ L+ +YA CG L A VF
Sbjct: 942 TFPFVLKACAK--TCAPKEGEQMHNHVIKLGFLLDIFVSNSLIYLYAACGALACARSVFN 999
Query: 210 LMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
M ++V+SW +LI G + ++ L+LF++MQA V+ +++T V++AC H G
Sbjct: 1000 EMLVKDVVSWNSLIGGYSQHNRLKEVLTLFKLMQAEEVQADKVTMVKVISACTHLGDWSM 1059
Query: 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAAC 329
+ I+ + +E + ++D + + G L+ A +V M+ + N + + + A
Sbjct: 1060 ADCMVRYIEHNH-IEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMK-DKNTVTLNAMITAY 1117
Query: 330 KEHKQFDMAERVIKQ 344
+ A+++ Q
Sbjct: 1118 AKGGNLVSAKKIFDQ 1132
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 110/233 (47%), Gaps = 23/233 (9%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHL------HSHILKLGFISHVYVATS 56
LF QM ++V S + I ++C + LT++ H+ S I L I +
Sbjct: 567 LFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISPSEITVLAVIPAISNLGG 626
Query: 57 LLHEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERM-PLRNVASW 115
+L ++ + + + + A N++I Y+K G+V + F+ M RN+ SW
Sbjct: 627 ILMGEMLNGYCEKKGIMSD-----ARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSW 681
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV--GLLMGKSAH 173
+++I+ + G L+LF EM G+ P+++T +V++ CSH G V GL KS
Sbjct: 682 TSIISGFAMHGLSVEALELFAEM-RRAGIKPNRITFLSVINACSHGGLVEQGLAFFKS-- 738
Query: 174 GFIVKNEWELNEQIATI--LVDMYAKCGFLKYALMVFE-LMEERNVISWTALI 223
+ E+ ++ +I ++DM + G L A + E L E NV W L+
Sbjct: 739 ---MVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILL 788
>gi|7671499|emb|CAB89340.1| putative protein [Arabidopsis thaliana]
Length = 514
Score = 274 bits (700), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 149/432 (34%), Positives = 246/432 (56%), Gaps = 43/432 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL-- 58
+ L+++M ++ V D ++ +LK+C+ + H +++ GF+ + YV +L+
Sbjct: 63 VSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILF 122
Query: 59 --------------------HEYVVTSF--GFARK--------LFDELPERNAVTWNTMI 88
H+ +S G+A++ LFDE+P ++ V WN MI
Sbjct: 123 HANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYKDQVAWNVMI 182
Query: 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ 148
G K + AR+ F+R ++V +W+AMI+ Y+N G L +F+EM + G PD
Sbjct: 183 TGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEM-RDAGEHPDV 241
Query: 149 MTIGAVLSGCSHLGSVGLLMGKSAHGFI-----VKNEWELNEQIATILVDMYAKCGFLKY 203
+TI ++LS C+ LG L GK H +I V + + I L+DMYAKCG +
Sbjct: 242 VTILSLLSACAVLGD--LETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDR 299
Query: 204 ALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263
A+ VF +++R++ +W LI G A ++E ++ +FE MQ V PNE+TF GV+ AC H
Sbjct: 300 AIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPNEVTFIGVILACSH 358
Query: 264 TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWG 323
+G VDEGRKYF ++ + Y++EP I+HYGCMVD+ G+AG LEEA+ + +M++EPN I+W
Sbjct: 359 SGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWR 418
Query: 324 SFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383
+ L ACK + ++ + ++ L M K E+ G + L+ ++Y +W+G ++VRK+ +
Sbjct: 419 TLLGACKIYGNVELGKYANEKLLSMRKDES--GDYVLLSNIYASTGQWDGVQKVRKMFDD 476
Query: 384 QNVRKARGSSVI 395
V+K G S+I
Sbjct: 477 TRVKKPTGVSLI 488
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 138/302 (45%), Gaps = 49/302 (16%)
Query: 46 GFISHVYVATSLLHEYVVTSFG---FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARD 102
G +S++ V L++ ++ G +A KLFDE+P+ + N +++G ++S
Sbjct: 5 GLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNHVLRGSAQSMK------ 58
Query: 103 FFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLG 162
P + V+ L+ EM G++PD+ T VL CS L
Sbjct: 59 -----PEKTVS--------------------LYTEM-EKRGVSPDRYTFTFVLKACSKLE 92
Query: 163 SVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTAL 222
G + HG +V++ + LNE + L+ +A CG L A +F+ + + ++W+++
Sbjct: 93 WRS--NGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSM 150
Query: 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD 282
G A RG ++A+ LF+ M +++ + ++T C+ +D R+ F E+
Sbjct: 151 TSGYAKRGKIDEAMRLFDEMPYK----DQVAWNVMITGCLKCKEMDSARELFDRFTEK-- 204
Query: 283 LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR---LEPNVIIWGSFLAACKEHKQFDMAE 339
+ + M+ + G+ +EA + + MR P+V+ S L+AC + +
Sbjct: 205 ---DVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGK 261
Query: 340 RV 341
R+
Sbjct: 262 RL 263
>gi|357498595|ref|XP_003619586.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
gi|355494601|gb|AES75804.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
Length = 528
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 149/407 (36%), Positives = 238/407 (58%), Gaps = 20/407 (4%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+LF M ++ ++F H+LKS ++ +H+ I+K GF+++ V TSL+ Y
Sbjct: 89 KLFKTMLNSNIRPNNFIYPHVLKSV---KERFLVDLVHAQIVKCGFLNYPVVETSLVDSY 145
Query: 62 --VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
V+ A K+FDE+ ERN V + ++ GY + G+V + F+ M R+V +W+A+I
Sbjct: 146 SKVLGGLRDAHKVFDEMSERNIVVFTVLVSGYLRVGDVEKGLMVFDEMVDRDVPAWNAVI 205
Query: 120 AAYLNAGAYDPGLKLFREMISNEGL---------TPDQMTIGAVLSGCSHLGSVGLLMGK 170
+ G + G++LFREM+ GL P+Q+T+ VLS C H G L +GK
Sbjct: 206 SGCTQNGFFSEGIRLFREMVFAAGLGEGGFCKGNKPNQVTVVCVLSACGHGGM--LQLGK 263
Query: 171 SAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRG 230
HG++ ++ + ++ ++ LVDMY KCG L+ A VFE+ + + + SW ++I A G
Sbjct: 264 WIHGYVYRHGFVVDSFVSNALVDMYGKCGSLELARKVFEMDQRKGLTSWNSMINCYALHG 323
Query: 231 YSEDALSLFEMMQ--ATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQ 288
EDA++ FE M GV+P+E+TF G+L AC H GLV++G YF+M+ +EY +EP+I
Sbjct: 324 KCEDAITFFEKMVECGGGVRPDEVTFIGLLNACTHGGLVEQGCGYFEMMIKEYGIEPQIA 383
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348
HYGC++DL G+AG +EA +V++ M +EP+ ++WGS L CK H + D+AE K+ +
Sbjct: 384 HYGCLIDLLGRAGQFDEAMDVVKGMSMEPDEVVWGSLLNGCKVHGRTDLAEFAAKKLVE- 442
Query: 349 VKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ P N GG T++ ++Y KW+ V + Q K G S I
Sbjct: 443 IDPHN-GGYGTMLANIYGQLGKWDEMRNVWSKLKQQKSYKIPGCSWI 488
>gi|147834049|emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
Length = 751
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 146/327 (44%), Positives = 207/327 (63%), Gaps = 5/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
ARKLFDE+PER+ V+W MI GYS +GN+ AR F+ MP +N+ SW+AMI+ Y
Sbjct: 378 ARKLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYXQNKQP 437
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
LKLF EM S L PD++TI +VL + LG++ L G H F+ + + + +
Sbjct: 438 YEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDL--GGWVHRFVRRKKLDRATNVG 495
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
T L+DMYAKCG + + VF+ M E+ SW ALI A G +++AL LF M G
Sbjct: 496 TALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFM 555
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
PNE+T GVL+AC H+GLV+EG+++FK + EE+ L P+I+HYGCMVDL G+AG L+EA +
Sbjct: 556 PNEITMIGVLSACNHSGLVEEGKRWFKAM-EEFGLTPKIEHYGCMVDLLGRAGCLQEAEK 614
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
++ +M E N II SFL AC K AERV+K+A++M + NDG + ++ +LY
Sbjct: 615 LMESMPYEANGIILSSFLFACGYSKDVARAERVLKEAIKM-EAWNDGN-YIMLRNLYANE 672
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
++W+ A+ V+ LM V+K G S I
Sbjct: 673 KRWKEADEVKGLMRRNGVKKEAGCSAI 699
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 138/328 (42%), Gaps = 45/328 (13%)
Query: 3 LFSQMHRQ-SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
L+ + R S DSF+ + KSC + +HSH++ +GF +Y AT+L
Sbjct: 248 LYRDLRRNTSFTPDSFTFSVLAKSCALNMAIWEGQEIHSHVVAVGFCLDLYAATAL---- 303
Query: 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+ Y+K G + AR F+ M R+ SW+A+I
Sbjct: 304 --------------------------VDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGG 337
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ +G D KLF +MI + + M V G + S L + +V W
Sbjct: 338 YVRSGDMDNAGKLFDQMIEKDSAAFNTMIDAYVKLG--DMCSARKLFDEMPERSVV--SW 393
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF-E 240
TI++ Y+ G L A +F+ M E+N+ SW A+I G +AL LF E
Sbjct: 394 -------TIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYXQNKQPYEALKLFHE 446
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M T ++P+E+T VL A G +D G + + + L+ ++D++ K
Sbjct: 447 MQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRK-KLDRATNVGTALIDMYAKC 505
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
G + ++ V M E W + + A
Sbjct: 506 GEIVKSRGVFDNM-PEKETASWNALINA 532
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 114/245 (46%), Gaps = 13/245 (5%)
Query: 91 YSKSGNVCEARDFFERMPLRNVASW-SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQM 149
Y + AR F+ P R+ A ++MI AY+ Y L+R++ N TPD
Sbjct: 204 YDPLAGIVHARRMFDHRPHRDDAFLCNSMIKAYVGMRQYSESFALYRDLRRNTSFTPDSF 263
Query: 150 TIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFE 209
T + C+ ++ + G+ H +V + L+ AT LVDMYAK G + A +F+
Sbjct: 264 TFSVLAKSCAL--NMAIWEGQEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDCARKLFD 321
Query: 210 LMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
M +R+ +SWTALI G G ++A LF+ M ++ + F ++ A V G +
Sbjct: 322 EMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQM----IEKDSAAFNTMIDAYVKLGDMCS 377
Query: 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAAC 329
RK F + E + I YG + G L+ A + M E N+ W + ++
Sbjct: 378 ARKLFDEMPERSVVSWTIMIYG-----YSSNGNLDSARSLFDAM-PEKNLFSWNAMISGY 431
Query: 330 KEHKQ 334
++KQ
Sbjct: 432 XQNKQ 436
>gi|42567862|ref|NP_197034.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635759|sp|Q9LXF2.2|PP385_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g15300
gi|332004762|gb|AED92145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 149/432 (34%), Positives = 246/432 (56%), Gaps = 43/432 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL-- 58
+ L+++M ++ V D ++ +LK+C+ + H +++ GF+ + YV +L+
Sbjct: 97 VSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILF 156
Query: 59 --------------------HEYVVTSF--GFARK--------LFDELPERNAVTWNTMI 88
H+ +S G+A++ LFDE+P ++ V WN MI
Sbjct: 157 HANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYKDQVAWNVMI 216
Query: 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ 148
G K + AR+ F+R ++V +W+AMI+ Y+N G L +F+EM + G PD
Sbjct: 217 TGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEM-RDAGEHPDV 275
Query: 149 MTIGAVLSGCSHLGSVGLLMGKSAHGFI-----VKNEWELNEQIATILVDMYAKCGFLKY 203
+TI ++LS C+ LG L GK H +I V + + I L+DMYAKCG +
Sbjct: 276 VTILSLLSACAVLGD--LETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDR 333
Query: 204 ALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263
A+ VF +++R++ +W LI G A ++E ++ +FE MQ V PNE+TF GV+ AC H
Sbjct: 334 AIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPNEVTFIGVILACSH 392
Query: 264 TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWG 323
+G VDEGRKYF ++ + Y++EP I+HYGCMVD+ G+AG LEEA+ + +M++EPN I+W
Sbjct: 393 SGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWR 452
Query: 324 SFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383
+ L ACK + ++ + ++ L M K E+ G + L+ ++Y +W+G ++VRK+ +
Sbjct: 453 TLLGACKIYGNVELGKYANEKLLSMRKDES--GDYVLLSNIYASTGQWDGVQKVRKMFDD 510
Query: 384 QNVRKARGSSVI 395
V+K G S+I
Sbjct: 511 TRVKKPTGVSLI 522
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 146/317 (46%), Gaps = 49/317 (15%)
Query: 31 NLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDELPERNAVTWNTM 87
N+ + +H+ ++ G +S++ V L++ ++ G +A KLFDE+P+ + N +
Sbjct: 24 NIRTLKQIHASMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNHV 83
Query: 88 IKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD 147
++G ++S P + V+ L+ EM G++PD
Sbjct: 84 LRGSAQSMK-----------PEKTVS--------------------LYTEM-EKRGVSPD 111
Query: 148 QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMV 207
+ T VL CS L G + HG +V++ + LNE + L+ +A CG L A +
Sbjct: 112 RYTFTFVLKACSKLEWRS--NGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASEL 169
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
F+ + + ++W+++ G A RG ++A+ LF+ M +++ + ++T C+ +
Sbjct: 170 FDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYK----DQVAWNVMITGCLKCKEM 225
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR---LEPNVIIWGS 324
D R+ F E+ + + M+ + G+ +EA + + MR P+V+ S
Sbjct: 226 DSARELFDRFTEK-----DVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILS 280
Query: 325 FLAACKEHKQFDMAERV 341
L+AC + +R+
Sbjct: 281 LLSACAVLGDLETGKRL 297
>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
Length = 644
Score = 273 bits (699), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 145/398 (36%), Positives = 228/398 (57%), Gaps = 6/398 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY- 61
LF M RQ + +D F+++ +L +C+ NL +HSH+L G + +A +L+ Y
Sbjct: 198 LFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYG 257
Query: 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
A FD +P +NAV+W +M+ +K ++ ARD+FE++P +++ SW+AMI+
Sbjct: 258 KCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISC 317
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ G + L L+ M GL PD+ T+ AVLS C LG L GK H I N
Sbjct: 318 YVQGGRFHEALDLYNRM-KLLGLAPDEFTLAAVLSACGQLGD--LASGKMIHDCIRDNFH 374
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ L+DMYA+CG + A+ +F M +NVISW A+I A G ++DAL F
Sbjct: 375 NPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRS 434
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M P+E+TF +L+AC H GL++ G+ YF+ + Y+++P ++HY CMVDL G+ G
Sbjct: 435 MVFDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGG 494
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L +A ++I+ M + P+V++WG+ L AC+ H + ++VIKQ L + GG+F LI
Sbjct: 495 QLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLEL--EGMSGGLFVLI 552
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLS 399
++ +WE +R+RKLM ++K G S I + S
Sbjct: 553 SNMLYETHQWEDMKRLRKLMREWGMKKNMGVSSIETNS 590
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 99/366 (27%), Positives = 163/366 (44%), Gaps = 68/366 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L M R+ + + F++ +LK+C + H ++KLGF+ V+V +LLH
Sbjct: 95 LPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHS 154
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y S G +R+ FDE+ +RN V+WN+MI GY+++GN EA FE M
Sbjct: 155 YASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGM------------ 202
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+GL D+ T+ ++L CS G+ L GK H ++
Sbjct: 203 --------------------RRQGLLADEFTLVSLLFACSAEGN--LEFGKLVHSHLLVR 240
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR---------- 229
++ +A LVDMY KCG L A F++M +N +SWT+++C A R
Sbjct: 241 GCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWF 300
Query: 230 ---------------------GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
G +AL L+ M+ G+ P+E T VL+AC G +
Sbjct: 301 EQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLA 360
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
G+ I + + P + + ++D++ + G ++ A + M NVI W + + A
Sbjct: 361 SGKMIHDCIRDNFH-NPGVALFNSLLDMYARCGQVDTAISLFSEMP-SKNVISWNAIIGA 418
Query: 329 CKEHKQ 334
H +
Sbjct: 419 LAMHGR 424
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 129/289 (44%), Gaps = 31/289 (10%)
Query: 95 GNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAV 154
G V AR F+R+P + ++++I AY N+ L L R MI G+ P++ T+ +
Sbjct: 58 GGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMI-RRGILPNEFTLPFL 116
Query: 155 LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER 214
L C+ + + +M HG +VK + + L+ YA G L + F+ M +R
Sbjct: 117 LKACARVQAWEHVM--VTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDR 174
Query: 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF 274
NV+SW ++I G A G + +A SLFE M+ G+ +E T +L AC G ++ G+
Sbjct: 175 NVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKL-- 232
Query: 275 KMIDEEYDLEPRIQHYGC---------MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSF 325
+ + GC +VD++GK G L A+ M + N + W S
Sbjct: 233 --------VHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFK-NAVSWTSM 283
Query: 326 LAACKEHKQFDMA--------ERVIKQALRMVKPENDGGVFTLICDLYT 366
L A + D A E+ I M+ GG F DLY
Sbjct: 284 LCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYN 332
>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 273 bits (699), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 135/360 (37%), Positives = 224/360 (62%), Gaps = 6/360 (1%)
Query: 37 HLHSHILKLGFISHVYVATSLLHEYVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSG 95
LH ++KLG + ++ ++L+ YV F G A+++FD + VTWNTMI G +K G
Sbjct: 118 QLHGRVIKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCG 177
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155
+ ++R F++M LRN SW++MI+ Y+ G + ++LF M EG+ P + T+ ++L
Sbjct: 178 EIDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRM-QEEGIKPSEFTMVSLL 236
Query: 156 SGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERN 215
+ C+ LG+ L G+ H +IVKN + LN + T ++DMY+KCG + AL VF+ ++
Sbjct: 237 NACACLGA--LRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKG 294
Query: 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275
+ W +LI G A G +A+ LF ++++ +KP+ ++F GVLTAC H G+VD + YF
Sbjct: 295 LSCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFL 354
Query: 276 MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQF 335
++ E Y +EP I+HY CMVD+ G+AG LEEA E+I++M + P+ IIWGS L++C+E+
Sbjct: 355 LMSETYKIEPSIKHYSCMVDVLGRAGLLEEAEELIKSMPVNPDAIIWGSLLSSCREYGNI 414
Query: 336 DMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+MA++ K+ + + P N+ F L+ ++Y + +E A R + + + K G S+I
Sbjct: 415 EMAKQAAKR-VNELDP-NESSSFILLSNVYAAHNHFEEAIEQRLSLKEKQMDKEPGCSLI 472
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 140/304 (46%), Gaps = 33/304 (10%)
Query: 24 KSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDELPERN 80
K+CT +L +H+ ++K G A+ +L + + G +A +F ++ N
Sbjct: 4 KNCTSMKDL---QKIHAQLIKTGLAKDTIAASRVL-AFCTSPAGDINYAYLVFTQIRNPN 59
Query: 81 AVTWNTMIKGYSKSGNVCEARDFFERM--------PLRNVASWSAMIAAYLNAGAYDPGL 132
WNT+I+G+S+S A F M P R ++ ++ AY G G
Sbjct: 60 LFVWNTIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQR--LTYPSVFKAYAQLGLAHEGA 117
Query: 133 KLFREMISNEGLTPDQMTIGAVLS---GCSHLGSVGLLMGKSAHGFIVKNEWELNEQIAT 189
+L +I GL DQ +L+ C LG + A GF V W T
Sbjct: 118 QLHGRVIK-LGLENDQFIQNTILNMYVNCGFLGEAQRIF-DGATGFDVVT-WN------T 168
Query: 190 ILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP 249
+++ + AKCG + + +F+ M RN +SW ++I G +G +A+ LF MQ G+KP
Sbjct: 169 MIIGL-AKCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKP 227
Query: 250 NEMTFTGVLTACVHTGLVDEGR-KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
+E T +L AC G + +G + ++ + L + ++D++ K G +++A +
Sbjct: 228 SEFTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIV--ITAIIDMYSKCGSIDKALQ 285
Query: 309 VIRT 312
V ++
Sbjct: 286 VFKS 289
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 69/325 (21%), Positives = 138/325 (42%), Gaps = 57/325 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
M+LFS+M + + F+++ +L +C L +H +I+K F + V T+++
Sbjct: 214 MELFSRMQEEGIKPSEFTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIVITAIIDM 273
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y S A ++F P++ WN++I G + SG EA F ++ N
Sbjct: 274 YSKCGSIDKALQVFKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSN-------- 325
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
L PD ++ VL+ C+H G ++ ++ F++ +
Sbjct: 326 ------------------------LKPDHVSFIGVLTACNHAG----MVDRAKDYFLLMS 357
Query: 180 E-WELNEQIA--TILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSEDA 235
E +++ I + +VD+ + G L+ A + + M + I W +L+ S+ R Y
Sbjct: 358 ETYKIEPSIKHYSCMVDVLGRAGLLEEAEELIKSMPVNPDAIIWGSLL--SSCREYGNIE 415
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTA--CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC- 292
++ + + PNE + +L+ H + + + +++ D EP GC
Sbjct: 416 MAKQAAKRVNELDPNESSSFILLSNVYAAHNHFEEAIEQRLSLKEKQMDKEP-----GCS 470
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEP 317
++++ G E +E + RL P
Sbjct: 471 LIEVNG------EVHEFVAGGRLHP 489
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 70/154 (45%), Gaps = 6/154 (3%)
Query: 196 AKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF--EMMQATGVKPNEMT 253
+ G + YA +VF + N+ W +I G + +A+SLF M + +P +T
Sbjct: 40 SPAGDINYAYLVFTQIRNPNLFVWNTIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLT 99
Query: 254 FTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312
+ V A GL EG + + ++I + + IQ+ +++++ GFL EA +
Sbjct: 100 YPSVFKAYAQLGLAHEGAQLHGRVIKLGLENDQFIQN--TILNMYVNCGFLGEAQRIFDG 157
Query: 313 MRLEPNVIIWGSFLAACKEHKQFDMAERVIKQAL 346
+V+ W + + + + D + R+ + L
Sbjct: 158 AT-GFDVVTWNTMIIGLAKCGEIDKSRRLFDKML 190
>gi|347954504|gb|AEP33752.1| chloroplast biogenesis 19, partial [Lobularia maritima]
Length = 496
Score = 273 bits (699), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 147/398 (36%), Positives = 241/398 (60%), Gaps = 12/398 (3%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNN--LTVIHHLHSHILKLGFI-SHVYVATSLLHE 60
FS M V + + + +L C F++ + LH + KLG +HV V T+++
Sbjct: 55 FSDMRFAGVEPNHITFIALLSGCGDFSSGSESFGDLLHGYACKLGLDRNHVMVGTAIIGM 114
Query: 61 YVV-TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y AR +FD + +N++TWNTMI GY + G + +A F+ MP R + SW+AMI
Sbjct: 115 YSKHGRVSKARLVFDHMEGKNSMTWNTMIDGYMRKGKIDDAYKLFDEMPERGLISWTAMI 174
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
++ G ++ L FREM S+ G+ PD + I AVL+ C++LG+ L G H ++V
Sbjct: 175 NGFVKKGFHEEALVWFREMQSS-GVEPDYVAIIAVLAACTNLGA--LSFGLWVHRYLVSR 231
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
++ N ++ +D++ +CG ++ A VF+ ME+R V+SW ++I + G+++++L F
Sbjct: 232 DFRNNVRVNNSSIDLHCRCGCVELAQPVFDHMEKRTVVSWNSVIVVFSANGHADESLVYF 291
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MQ G KPN +TFTG LTAC H GLV+EG +YF+ + +EY + PRI+HYGC+VDL+ +
Sbjct: 292 RRMQEEGFKPNAVTFTGALTACSHVGLVEEGLRYFQTMKKEYRISPRIEHYGCLVDLYSR 351
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFD-MAERVIKQ-ALRMVKPENDGGV 357
AG LE+A V+++M ++PN ++ GS LAAC+ H +AER++K + VK ++
Sbjct: 352 AGRLEDALNVVQSMPMKPNEVVIGSLLAACRTHGNNTVLAERLMKHLSDTNVKSHSN--- 408
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++ ++Y + KWEGA ++R+ M ++K G S I
Sbjct: 409 YVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSI 446
>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 535
Score = 273 bits (699), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 154/427 (36%), Positives = 232/427 (54%), Gaps = 36/427 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F +M V D +S +LK+C F +H +K ++ V+V +L++
Sbjct: 95 LTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFMKSDLVTDVFVENTLINV 154
Query: 61 YVVTS-FGFARK-------------------------------LFDELPERNAVTWNTMI 88
Y + F ARK LFDE+ ERN +WN MI
Sbjct: 155 YGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLDKGLVEEARALFDEMEERNVESWNFMI 214
Query: 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ 148
GY+ +G V EAR+ F+ MP+++V SW+AM+ AY + G Y+ L++F M+ + PD
Sbjct: 215 SGYAAAGLVKEAREVFDSMPVKDVVSWNAMVTAYAHVGCYNEVLEVFNMMLDDSAERPDG 274
Query: 149 MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVF 208
T+ VLS C+ LGS L G+ H +I K+ E+ +AT LVDMY+KCG + AL VF
Sbjct: 275 FTLVNVLSACASLGS--LSQGEWVHVYIDKHGIEIEGFVATALVDMYSKCGKIDKALEVF 332
Query: 209 ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
+R+V +W ++I G + G +DAL +F M G KPN +TF GVL+AC H GL+D
Sbjct: 333 RDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNHVGLLD 392
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
+ RK F+M++ Y +EP I+HYGCMVDL G+ G EEA E++ + + I+ S L A
Sbjct: 393 QARKLFEMMNSVYGIEPTIEHYGCMVDLLGRMGKFEEAEELVNEVPADEASILLESLLGA 452
Query: 329 CKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRK 388
CK + + AER+ + L E+ G + + +LY + +W+ A VR M + V+K
Sbjct: 453 CKRFGKLEQAERIANRLLESNPRESSG--YVQMSNLYASHGRWDEAMEVRGKMRAERVKK 510
Query: 389 ARGSSVI 395
G S+I
Sbjct: 511 NPGCSMI 517
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 90/389 (23%), Positives = 162/389 (41%), Gaps = 46/389 (11%)
Query: 16 SFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDE 75
S + + IL +L I H+ +LK G + A+ L+ + T+
Sbjct: 6 STTPVPILSFTERAKSLLEIQQAHAFMLKTGLFHDTFSASKLV-AFAATN---------- 54
Query: 76 LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF 135
PE V++ A R+ N + +++I AY N+ + L +F
Sbjct: 55 -PEPKTVSY---------------AHSILNRIESPNGFTHNSVIRAYANSSTPEIALTVF 98
Query: 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY 195
REM+ + PD+ + VL C+ G G+ HG +K++ + + L+++Y
Sbjct: 99 REMLLGP-VFPDKYSFTFVLKACAAF--CGFEEGRQIHGLFMKSDLVTDVFVENTLINVY 155
Query: 196 AKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT 255
+ G+ + A V + M R+ +SW +L+ +G E+A +LF+ M+ V+ +
Sbjct: 156 GRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLDKGLVEEARALFDEMEERNVESWNFMIS 215
Query: 256 GVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRL 315
G A GLV E R+ F + + + + MV + G E EV M
Sbjct: 216 GYAAA----GLVKEAREVFDSMPVK-----DVVSWNAMVTAYAHVGCYNEVLEVFNMMLD 266
Query: 316 E----PNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKW 371
+ P+ + L+AC E V + E +G V T + D+Y+ K
Sbjct: 267 DSAERPDGFTLVNVLSACASLGSLSQGEWV-HVYIDKHGIEIEGFVATALVDMYSKCGKI 325
Query: 372 EGAERVRKLMLNQNVRKARGSSVISSLSV 400
+ A V + ++V + +S+I+ LSV
Sbjct: 326 DKALEVFRDTSKRDV--STWNSIITGLSV 352
>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
Length = 793
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 150/400 (37%), Positives = 232/400 (58%), Gaps = 14/400 (3%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY- 61
LF +M+ + D +L +L +C+ + +H ++K+G ++V + +L+H Y
Sbjct: 276 LFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYS 335
Query: 62 ----VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
VVT A+KLF E + ++WN+MI GY K G + +AR F+ MP ++ SWSA
Sbjct: 336 SCEEVVT----AQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSA 391
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MI+ Y + L LF+EM EG PD+ + +V+S C+HL + L GK H +I
Sbjct: 392 MISGYAQQDRFTETLVLFQEM-QIEGTKPDETILVSVISACTHLAA--LDQGKWIHAYIR 448
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
KN ++N + T L++MY K G ++ AL VF+ +EE+ V +W ALI G A G + +L
Sbjct: 449 KNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLK 508
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
F M+ GV PNE+TF VL AC H GLVDEG ++F + +E+ + P I+HYGCMVDL
Sbjct: 509 TFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLL 568
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
G+AG L+EA E+I +M + P+V WG+ L ACK++ + ER+ ++ + + P++D G
Sbjct: 569 GRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVEL-HPDHD-GF 626
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
L+ ++Y W VR +M V K G S+I +
Sbjct: 627 NVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIEA 666
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 110/391 (28%), Positives = 186/391 (47%), Gaps = 76/391 (19%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCT----HFNNLTVIHHLHSHILKLGFISHVYVATSLL 58
++ M +V +D+++ + +SC+ F+ + H+LK+GF S VY+ +L+
Sbjct: 113 VYKFMLESNVAADNYTYPILFQSCSIRLAEFDGKCI----QDHVLKVGFDSDVYIQNTLI 168
Query: 59 HEYVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNV----- 112
+ Y V + ARK+FD + V+WN+M+ GY GNV EA+D ++RMP RNV
Sbjct: 169 NMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRMPERNVIASNS 228
Query: 113 --------------------------ASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
SWSA+I+ Y Y+ L LF+EM +N G+
Sbjct: 229 MIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNAN-GIMV 287
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA---------- 196
D++ + +VLS CS L + ++ GK HG +VK E + L+ MY+
Sbjct: 288 DEVVVLSVLSACSRL--LVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQK 345
Query: 197 ---------------------KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
KCG ++ A +F+ M +++ +SW+A+I G A + +
Sbjct: 346 LFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTET 405
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
L LF+ MQ G KP+E V++AC H +D+G K+ + L+ I +++
Sbjct: 406 LVLFQEMQIEGTKPDETILVSVISACTHLAALDQG-KWIHAYIRKNGLKINIILGTTLIN 464
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
++ K G +E+A EV + + E V W + +
Sbjct: 465 MYMKLGCVEDALEVFKGLE-EKGVSTWNALI 494
>gi|414879991|tpg|DAA57122.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 868
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 143/382 (37%), Positives = 232/382 (60%), Gaps = 7/382 (1%)
Query: 9 RQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS-FG 67
RQ + D+F +LK+C LH+ +++ GF H YV T+L++ YV++
Sbjct: 472 RQHLADDTFVFTFVLKACAGLGWHRAGAQLHALVVQKGFEFHAYVHTALINVYVMSRCLV 531
Query: 68 FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
ARK+FDE+P +N V+WN MI G++ G V AR F++MP RNV SW+ +I Y A
Sbjct: 532 EARKVFDEMPVKNVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACL 591
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
Y L L R M++ G++P ++T+ AV+ S+LG G+LMG+ +G+ K + ++
Sbjct: 592 YAEALTLLRHMMAG-GISPSEITVLAVIPAISNLG--GILMGEMLNGYCEKKGIMSDARV 648
Query: 188 ATILVDMYAKCGFLKYALMVF-ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
L+D+YAK G ++ +L VF E+++ RN++SWT++I G A G S +AL LF M+ G
Sbjct: 649 GNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAG 708
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
+KPN +TF V+ AC H GLV++G +FK + EY+++P I+H+GC++D+ G+AG L EA
Sbjct: 709 IKPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEA 768
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366
++I + +E NV +W L C ++ + M ER IK + + GG F ++ ++ T
Sbjct: 769 EQIIEGLPMEVNVTVWRILLGCCSKYGEVAMGERAIKMISDLER--ESGGDFAVLSNVLT 826
Query: 367 MNEKWEGAERVRKLMLNQNVRK 388
++ AE+ RKL+ + + K
Sbjct: 827 ELGRFSDAEQARKLLDQRKIVK 848
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 110/233 (47%), Gaps = 23/233 (9%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHL------HSHILKLGFISHVYVATS 56
LF QM ++V S + I ++C + LT++ H+ S I L I +
Sbjct: 567 LFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISPSEITVLAVIPAISNLGG 626
Query: 57 LLHEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERM-PLRNVASW 115
+L ++ + + + + A N++I Y+K G+V + F+ M RN+ SW
Sbjct: 627 ILMGEMLNGYCEKKGIMSD-----ARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSW 681
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV--GLLMGKSAH 173
+++I+ + G L+LF EM G+ P+++T +V++ CSH G V GL KS
Sbjct: 682 TSIISGFAMHGLSVEALELFAEM-RRAGIKPNRITFLSVINACSHGGLVEQGLAFFKS-- 738
Query: 174 GFIVKNEWELNEQIATI--LVDMYAKCGFLKYALMVFE-LMEERNVISWTALI 223
+ E+ ++ +I ++DM + G L A + E L E NV W L+
Sbjct: 739 ---MVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILL 788
>gi|357462223|ref|XP_003601393.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|358344321|ref|XP_003636238.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490441|gb|AES71644.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502173|gb|AES83376.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 486
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 145/400 (36%), Positives = 236/400 (59%), Gaps = 12/400 (3%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
F++M R S+ D FS +LKS + + ++H +H + K GF H++V +L+H Y
Sbjct: 94 FFNRMRRNSIAPDEFSFTFLLKSRSF--TMPLVHDIHGAVFKFGFCRHLHVQNALIHLYA 151
Query: 63 VTSFGF-ARKLFDELP----ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
V ARK+F++ + + V+W+ ++ ++K+G + AR F+ MP R+V SW+
Sbjct: 152 VGGVTISARKVFEDAVRVGLDVDIVSWSGLLVAHAKAGELDVARKVFDGMPERDVVSWTI 211
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
M++AY A L LF+EM G+ PD++T+ +V+S C+ LG MG+ H F+
Sbjct: 212 MLSAYSKAKRPHETLDLFQEM-RLAGVWPDEVTVLSVISACAELGDAE--MGRMVHKFVE 268
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
+N + + L+DMY KCG L+ A VF+ + +++I+W A++ A+ GY+EDA
Sbjct: 269 ENGFGWMVALCNSLIDMYGKCGCLEEAWQVFDRTKRKSLITWNAMMMVCANHGYAEDAFR 328
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LFE M +GV P+ +T +L A H G VDEG + F+ + +Y +EPRI+HYG +VD+
Sbjct: 329 LFEGMIGSGVVPDGVTILALLVAYAHKGFVDEGIRLFESMQRDYGVEPRIEHYGAVVDML 388
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
G++G L+EAY ++ +M + N +IWG+ L AC+ H M ERVIK+ L + KP+ +GG
Sbjct: 389 GRSGRLQEAYNLLTSMPIPSNDVIWGALLGACRIHGDVGMGERVIKKLLEL-KPD-EGGY 446
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
+ L+ D+Y + A +R+ ML RK G S + +
Sbjct: 447 YILLRDIYVAAGRTAEANEMRQAMLASGARKNPGCSWVEA 486
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 154/345 (44%), Gaps = 41/345 (11%)
Query: 18 SILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFD 74
+++++ + C N +IH +H + H V L V+ FG +A +FD
Sbjct: 9 ALVYMAEKCISMRNFKLIH---AHAFRTCLHQHAVVLGKLFRFAAVSPFGDLSYAHNMFD 65
Query: 75 ELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKL 134
++P+ +NT+I+ +S S + FF RM ++A P
Sbjct: 66 QMPQPTTFFYNTLIRAHSHSTTPSFSSLFFNRMRRNSIA----------------PDEFS 109
Query: 135 FREMISNEGLT-PDQMTI-GAV--LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATI 190
F ++ + T P I GAV C HL L+ A G + + ++ E +
Sbjct: 110 FTFLLKSRSFTMPLVHDIHGAVFKFGFCRHLHVQNALIHLYAVGGVTISARKVFEDAVRV 169
Query: 191 LVDM-----------YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+D+ +AK G L A VF+ M ER+V+SWT ++ + + L LF
Sbjct: 170 GLDVDIVSWSGLLVAHAKAGELDVARKVFDGMPERDVVSWTIMLSAYSKAKRPHETLDLF 229
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+ M+ GV P+E+T V++AC G + GR K + EE + ++D++GK
Sbjct: 230 QEMRLAGVWPDEVTVLSVISACAELGDAEMGRMVHKFV-EENGFGWMVALCNSLIDMYGK 288
Query: 300 AGFLEEAYEVI-RTMRLEPNVIIWGSFLAACKEHKQFDMAERVIK 343
G LEEA++V RT R ++I W + + C H + A R+ +
Sbjct: 289 CGCLEEAWQVFDRTKR--KSLITWNAMMMVCANHGYAEDAFRLFE 331
>gi|15240355|ref|NP_200988.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171532|sp|Q9FLS9.1|PP441_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61800
gi|10176873|dbj|BAB10080.1| unnamed protein product [Arabidopsis thaliana]
gi|332010136|gb|AED97519.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 499
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 141/404 (34%), Positives = 231/404 (57%), Gaps = 13/404 (3%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNN--LTVIHHLHSHILKLGFISHVYVATSLLH 59
+ F +M R+SVP D + + K+C N LT++ LH L+ G +S ++ +L+
Sbjct: 101 RFFVEMRRRSVPPDFHTFPFVFKACAAKKNGDLTLVKTLHCQALRFGLLSDLFTLNTLIR 160
Query: 60 EY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y ++ A +LFDE P+R+ VT+N +I G K+ + AR+ F+ MPLR++ SW+++
Sbjct: 161 VYSLIAPIDSALQLFDENPQRDVVTYNVLIDGLVKAREIVRARELFDSMPLRDLVSWNSL 220
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I+ Y +KLF EM++ GL PD + I + LS C+ G GK+ H + +
Sbjct: 221 ISGYAQMNHCREAIKLFDEMVA-LGLKPDNVAIVSTLSACAQSGD--WQKGKAIHDYTKR 277
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
++ +AT LVD YAKCGF+ A+ +FEL ++ + +W A+I G A G E +
Sbjct: 278 KRLFIDSFLATGLVDFYAKCGFIDTAMEIFELCSDKTLFTWNAMITGLAMHGNGELTVDY 337
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F M ++G+KP+ +TF VL C H+GLVDE R F + YD+ ++HYGCM DL G
Sbjct: 338 FRKMVSSGIKPDGVTFISVLVGCSHSGLVDEARNLFDQMRSLYDVNREMKHYGCMADLLG 397
Query: 299 KAGFLEEAYEVIRTMRLE----PNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
+AG +EEA E+I M + ++ W L C+ H ++AE+ + ++ + PE D
Sbjct: 398 RAGLIEEAAEMIEQMPKDGGNREKLLAWSGLLGGCRIHGNIEIAEKAANR-VKALSPE-D 455
Query: 355 GGVFTLICDLYTMNEKWEGAERVRKLM-LNQNVRKARGSSVISS 397
GGV+ ++ ++Y E+WE +VR+++ ++ V+K G S + S
Sbjct: 456 GGVYKVMVEMYANAERWEEVVKVREIIDRDKKVKKNVGFSKVLS 499
>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 143/396 (36%), Positives = 227/396 (57%), Gaps = 21/396 (5%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ + +M + + D +++ ++ SC +L + H +I + G V +A +L+
Sbjct: 165 LNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDM 224
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y+ + ARKLFD + + V+W TM+ F+ MP ++V W+AMI
Sbjct: 225 YMKCGNLESARKLFDSMTNKTMVSWTTML---------------FDEMPDKDVVPWNAMI 269
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y++A L LF EM + + PD++T+ + LS CS LG+ L +G H +I K+
Sbjct: 270 GGYVHANRGKEALALFNEMQAMN-INPDEVTMVSCLSACSQLGA--LDVGIWIHHYIEKH 326
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
E LN + T L+DMYAKCG + A+ VF+ + RN ++WTA+I G A G + A++ F
Sbjct: 327 ELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYF 386
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M V P+E+TF G+L+AC H GLV+EGRKYF + +++L P+++HY CMVDL G+
Sbjct: 387 SEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGR 446
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG LEEA E+I++M +E + ++WG+ AC+ H M ER + L+M +D G++
Sbjct: 447 AGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQM--DPHDSGIYV 504
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y E W+ A + RKLM + V K G S I
Sbjct: 505 LLANMYGEAEMWKEAGKXRKLMRQRGVEKTPGCSSI 540
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 163/335 (48%), Gaps = 53/335 (15%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLF 73
D+++ + K+C + + + + H+L LGF S ++V+ +++H V ARK+F
Sbjct: 78 DNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMF 137
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
D+ R+ V+WN+MI GY + G EA +F+ M +
Sbjct: 138 DKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKV------------------------ 173
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
EG+ PD++T+ V+S C+ L + L G+ +H +I +N +L +A L+D
Sbjct: 174 --------EGIKPDEVTMIGVVSSCAQLEDLDL--GRESHCYIEENGLKLTVPLANALMD 223
Query: 194 MYAKCGFLKYA----------------LMVFELMEERNVISWTALICGSAHRGYSEDALS 237
MY KCG L+ A M+F+ M +++V+ W A+I G H ++AL+
Sbjct: 224 MYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALA 283
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LF MQA + P+E+T L+AC G +D G I E+++L + ++D++
Sbjct: 284 LFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYI-EKHELSLNVALGTALIDMY 342
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
K G + +A +V + + N + W + ++ H
Sbjct: 343 AKCGKITKAIQVFQELPGR-NSLTWTAIISGLALH 376
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 113/224 (50%), Gaps = 6/224 (2%)
Query: 103 FFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLG 162
F R P N SW+ I +L++ + L++ ++ +G PD T + C+ L
Sbjct: 36 FNTRNP--NTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLS 93
Query: 163 SVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTAL 222
+ MG G ++ ++ + ++ ++ + CG L A +F+ R+++SW ++
Sbjct: 94 LI--RMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSM 151
Query: 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD 282
I G RG++ +AL+ + M+ G+KP+E+T GV+++C +D GR+ I EE
Sbjct: 152 INGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYI-EENG 210
Query: 283 LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
L+ + ++D++ K G LE A ++ +M ++ W + L
Sbjct: 211 LKLTVPLANALMDMYMKCGNLESARKLFDSMT-NKTMVSWTTML 253
>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 595
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 149/397 (37%), Positives = 236/397 (59%), Gaps = 10/397 (2%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV 63
+ QM SVP +S++ +L++C + + +H ++KLGF S V+ +LLH Y +
Sbjct: 76 YQQMLSSSVPHNSYTFPFLLRACRNLLAMGEALQVHGLVIKLGFGSDVFALNALLHVYAL 135
Query: 64 TS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
AR+LFD +PER+AV+WN MI GY KSG+V A F MPL+NV SW+++I+
Sbjct: 136 CGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGL 195
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+ AG L L EM N G D + I ++L+ C++LG+ L G+ H +++ N +
Sbjct: 196 VEAGQSVEALSLCYEM-QNAGFELDGVAIASLLTACANLGA--LDQGRWLHFYVLNNGVD 252
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELME--ERNVISWTALICGSAHRGYSEDALSLFE 240
++ I LV+MY KCG ++ AL VF ++ +++V WTA+I G A G +AL F
Sbjct: 253 VDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFN 312
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ G++PN +TFT VL AC + GLV+EG++ FK + Y++ P I+HYGCMVDL G++
Sbjct: 313 RMRREGIRPNSITFTAVLRACSYGGLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRS 372
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND-GGVFT 359
G L+EA E+I+ M ++P+ +IWG+ L AC H+ F + +V +V+ ++D G +
Sbjct: 373 GRLDEAKELIKKMPMKPSAVIWGALLKACWIHRDFLLGSQV---GAHLVEVDSDHSGRYI 429
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
+ + KW+ A VR M + V + G S ++
Sbjct: 430 QLATILAAEGKWKEAAEVRLKMKSLGVPISPGKSSVT 466
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 143/302 (47%), Gaps = 20/302 (6%)
Query: 35 IHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDELPERNAVTWNTMIKGY 91
+ + + ++K I+ +AT L G +A+++F+ + N WN +I+ Y
Sbjct: 4 LKQIQAQMIKTAIITEPKLATKFLTLCTSPHVGDLLYAQRVFNGITSPNTFMWNAIIRAY 63
Query: 92 SKSGNVCEARDFFERMPLRNVA----SWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD 147
S S A +++M +V ++ ++ A N A L++ ++ G D
Sbjct: 64 SNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRNLLAMGEALQV-HGLVIKLGFGSD 122
Query: 148 QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMV 207
+ A+L + G + + N E + I++D Y K G +K A V
Sbjct: 123 VFALNALLHVYALCGEI------HCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGV 176
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
F M +NV+SWT+LI G G S +ALSL MQ G + + + +LTAC + G +
Sbjct: 177 FLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGAL 236
Query: 268 DEGR-KYFKMIDEEYDLEPRIQHYGC-MVDLFGKAGFLEEAYEVIRTMR-LEPNVIIWGS 324
D+GR +F +++ D++ I GC +V+++ K G +EEA V ++ + +V IW +
Sbjct: 237 DQGRWLHFYVLNNGVDVDRVI---GCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTA 293
Query: 325 FL 326
+
Sbjct: 294 MI 295
>gi|255564780|ref|XP_002523384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537334|gb|EEF38963.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 538
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 144/395 (36%), Positives = 227/395 (57%), Gaps = 7/395 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF+++ + DS+S LK+ + HS ++ G SH++V SL+ Y
Sbjct: 97 LFNRIQSARLRPDSYSFPFALKAVIRLSATKTGLQFHSQAIRFGLHSHLHVLVSLIRMYS 156
Query: 63 VTSFGFARKLFDELP--ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ ARKLFD +P RN WN M+ Y+K ++ A+ F+ MP RN+ SW+A+I+
Sbjct: 157 SSHISDARKLFDGIPLTARNVALWNAMLTSYAKICDMPNAQHLFDSMPQRNLISWTALIS 216
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y + + +FR M + + PD++T+ AVLS C+ LG++ L G+ +I +
Sbjct: 217 GYAHINRPHQAIAIFRTM-QLQNVVPDEITLLAVLSACAQLGALEL--GEWIRNYIDIHG 273
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
N + L+DMYAK G +K AL++FE M+ + +++WT +I G A G AL +F
Sbjct: 274 LHRNVPLHNALIDMYAKSGNIKRALLIFESMKHKTIVTWTTMIAGLALHGLGTQALEMFS 333
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ VKPNE+TF VL+AC H GLV R +F + Y ++P+I+HYGCM+DL G+A
Sbjct: 334 RMERDRVKPNEITFIAVLSACSHVGLVQLARSFFTNMRSRYTIQPKIEHYGCMIDLLGRA 393
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G+L+EA ++++ M EPN IWGS LAA H + ER +K + + +P N G + L
Sbjct: 394 GYLQEAQQLLQQMPFEPNAAIWGSLLAASYTHGDAMLGERTLKHLIEL-EPNNSGN-YAL 451
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y +W+ + VRK+M ++ V+K G S I
Sbjct: 452 LSNIYASLGRWKASRIVRKMMRDRGVKKIPGGSFI 486
>gi|347954494|gb|AEP33747.1| chloroplast biogenesis 19, partial [Brassica oleracea]
Length = 485
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 148/396 (37%), Positives = 242/396 (61%), Gaps = 12/396 (3%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFI-SHVYVATSLLHEYV 62
F+ M V + +++ +L C LH + KLG + V V T++L Y
Sbjct: 52 FTAMRLAGVEPNHITLIALLSGCADCEPFG--DSLHGYACKLGLDRNQVMVGTAILGMYS 109
Query: 63 VTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
F AR +FD + ++N+VTWNTMI GY +SG V +A F+ MP R++ SW+AMI
Sbjct: 110 KRRRFRKARLVFDRVEDKNSVTWNTMIDGYMRSGRVDDAAKVFDEMPERDLISWTAMING 169
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
++ G ++ L FREM G+ PD + + A L+ C++LG+ L G H F+V ++
Sbjct: 170 FVKKGLHEEALAWFREM-QVSGVKPDYVAVIAALAACANLGA--LSFGLWVHRFVVSQDF 226
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ N +++ L+D+Y +CG +++A VF+ ME+R V+SW ++I G A G++ ++L F
Sbjct: 227 KNNVRVSNSLIDLYCRCGCVEFARQVFDEMEKRTVVSWNSVIVGFAANGHAHESLVYFRR 286
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
MQ KP+ +TFTG LTAC H GLV+EG +YF+ + +Y + PRI+HYGC+VDL+ +AG
Sbjct: 287 MQEERFKPDAVTFTGALTACSHVGLVEEGVRYFEAMKRDYRISPRIEHYGCLVDLYSRAG 346
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEH-KQFDMAERVIKQALRM-VKPENDGGVFT 359
LEEA +V+ +M ++PN ++ GS LAAC+ H ++AER++K+ + VK ++ +
Sbjct: 347 RLEEALKVVESMPMKPNEVVIGSLLAACRTHGNDTELAERMMKRLSELKVKGHSN---YV 403
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++ ++Y + +WEGA ++R+ M ++K G S I
Sbjct: 404 ILSNMYAADGQWEGASKMRRKMKGLGLKKQPGFSSI 439
>gi|23617093|dbj|BAC20776.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
Length = 681
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 144/409 (35%), Positives = 231/409 (56%), Gaps = 22/409 (5%)
Query: 1 MQLFSQMHRQSVPSDSFSILHI----------LKSCTHFNNLTVIHHLHSHILKLGFISH 50
+ LFS+ R++ S +F + I +C+ + H+H+ +K G
Sbjct: 126 LTLFSRFRRRNPHSFTFLLASISNHLNAAGPSASACSFLGS-----HVHALAVKAGAAGD 180
Query: 51 VYVATSLLHEYVVT-SFGFARKLFDELPE-RNAVTWNTMIKGYSKSGNVCEARDFFERMP 108
++V +L+H Y V+ G R++FDELP R+ +TWN ++ GY ++G + AR+ F+ MP
Sbjct: 181 LFVRNALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGYVRAGMMTVAREVFDEMP 240
Query: 109 LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLM 168
+R+ SWS ++ Y+ + L +FR M+ +G+ P+Q + LS + LG L
Sbjct: 241 VRDEISWSTLVGGYVKEEELEVALGVFRNMV-EQGVRPNQAAVVTALSAAARLGL--LEH 297
Query: 169 GKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAH 228
GK H + ++ + + LVDMYAKCG + A VF+ M R+V +W A+ICG A
Sbjct: 298 GKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAA 357
Query: 229 RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQ 288
G DA+ LFE + G+ P +TF GVL C +GLV EGR+YFK+I E+Y +EP ++
Sbjct: 358 HGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEME 417
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348
HYGCMVDL G+AG + EA E+I M + P+ ++WG+ L++CK H D+ V + + +
Sbjct: 418 HYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIEL 477
Query: 349 VKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
P + G + L+ +Y KW+ VRKLM ++ K+ G S++ +
Sbjct: 478 -DPTHS-GYYVLLSGIYAKANKWDEVREVRKLMSSRGTNKSAGWSLMEA 524
>gi|115470713|ref|NP_001058955.1| Os07g0163900 [Oryza sativa Japonica Group]
gi|113610491|dbj|BAF20869.1| Os07g0163900 [Oryza sativa Japonica Group]
Length = 664
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 144/409 (35%), Positives = 231/409 (56%), Gaps = 22/409 (5%)
Query: 1 MQLFSQMHRQSVPSDSFSILHI----------LKSCTHFNNLTVIHHLHSHILKLGFISH 50
+ LFS+ R++ S +F + I +C+ + H+H+ +K G
Sbjct: 126 LTLFSRFRRRNPHSFTFLLASISNHLNAAGPSASACSFLGS-----HVHALAVKAGAAGD 180
Query: 51 VYVATSLLHEYVVT-SFGFARKLFDELPE-RNAVTWNTMIKGYSKSGNVCEARDFFERMP 108
++V +L+H Y V+ G R++FDELP R+ +TWN ++ GY ++G + AR+ F+ MP
Sbjct: 181 LFVRNALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGYVRAGMMTVAREVFDEMP 240
Query: 109 LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLM 168
+R+ SWS ++ Y+ + L +FR M+ +G+ P+Q + LS + LG L
Sbjct: 241 VRDEISWSTLVGGYVKEEELEVALGVFRNMV-EQGVRPNQAAVVTALSAAARLGL--LEH 297
Query: 169 GKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAH 228
GK H + ++ + + LVDMYAKCG + A VF+ M R+V +W A+ICG A
Sbjct: 298 GKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAA 357
Query: 229 RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQ 288
G DA+ LFE + G+ P +TF GVL C +GLV EGR+YFK+I E+Y +EP ++
Sbjct: 358 HGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEME 417
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348
HYGCMVDL G+AG + EA E+I M + P+ ++WG+ L++CK H D+ V + + +
Sbjct: 418 HYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIEL 477
Query: 349 VKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
P + G + L+ +Y KW+ VRKLM ++ K+ G S++ +
Sbjct: 478 -DPTHS-GYYVLLSGIYAKANKWDEVREVRKLMSSRGTNKSAGWSLMEA 524
>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 513
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 135/349 (38%), Positives = 214/349 (61%), Gaps = 12/349 (3%)
Query: 6 QMHRQSVPS-DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT 64
Q+ S P+ + + ++K+C + +H+ ++K G +++++ TSL+ Y
Sbjct: 102 QLSLPSAPNPNEYIYTSLIKACAGLEAIADGLKVHAVVIKSGLDNNIHLGTSLVDMY--- 158
Query: 65 SFGF-----ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
F F A ++FDE+P R+ V+WNTM+ GY G++ AR F++M R+V SW+AMI
Sbjct: 159 -FKFREPASAGQVFDEMPLRDVVSWNTMVSGYCLCGDLESARRVFDQMLERDVISWNAMI 217
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y+ G Y +++F EM G+ PD +T+ +VLS C+H+G+ L G+ F+
Sbjct: 218 GGYVQNGKYSDAIEVFHEMQKVGGVVPDDVTLVSVLSACAHVGA--LDFGRWIDRFVGWR 275
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
LN + L+DMYAKCG ++ A +F+ M ER+VISW+ +ICGS G +++A +
Sbjct: 276 GRGLNLYLGNALIDMYAKCGTMEEARRIFDGMRERDVISWSTMICGSGTHGDADEAFGYY 335
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M GVKPNE+TF G+L+AC H GLVD+G + F + +EY + P++ HYGC++DL +
Sbjct: 336 SKMLECGVKPNEVTFMGLLSACSHAGLVDKGIELFSRMIQEYRIVPKVGHYGCVIDLLSR 395
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348
AG L+EA ++I +M +EPNVI+WG+ L C+ HK F ERV + L +
Sbjct: 396 AGRLDEAEDLINSMPIEPNVIVWGALLGGCRIHKDFRRGERVAQHLLEL 444
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/288 (29%), Positives = 135/288 (46%), Gaps = 43/288 (14%)
Query: 87 MIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMIS-NEGLT 145
+I + + N+ A+ F ++P NV SW+A+I A++N GA++ L F +S
Sbjct: 51 LIGACAANANLYHAQLIFAQLPNPNVFSWNAIIKAHINCGAWEHALNCFNRQLSLPSAPN 110
Query: 146 PDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK-------- 197
P++ +++ C+ L ++ G H ++K+ + N + T LVDMY K
Sbjct: 111 PNEYIYTSLIKACAGLEAIA--DGLKVHAVVIKSGLDNNIHLGTSLVDMYFKFREPASAG 168
Query: 198 -----------------------CGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
CG L+ A VF+ M ER+VISW A+I G G D
Sbjct: 169 QVFDEMPLRDVVSWNTMVSGYCLCGDLESARRVFDQMLERDVISWNAMIGGYVQNGKYSD 228
Query: 235 ALSLF-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR-IQHY-- 290
A+ +F EM + GV P+++T VL+AC H G +D GR ID R + Y
Sbjct: 229 AIEVFHEMQKVGGVVPDDVTLVSVLSACAHVGALDFGR----WIDRFVGWRGRGLNLYLG 284
Query: 291 GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
++D++ K G +EEA + MR E +VI W + + H D A
Sbjct: 285 NALIDMYAKCGTMEEARRIFDGMR-ERDVISWSTMICGSGTHGDADEA 331
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 82/193 (42%), Gaps = 9/193 (4%)
Query: 187 IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF--EMMQA 244
IA L+ A L +A ++F + NV SW A+I + G E AL+ F ++
Sbjct: 47 IAVKLIGACAANANLYHAQLIFAQLPNPNVFSWNAIIKAHINCGAWEHALNCFNRQLSLP 106
Query: 245 TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLE 304
+ PNE +T ++ AC + +G K ++ + L+ I +VD++ K
Sbjct: 107 SAPNPNEYIYTSLIKACAGLEAIADGLKVHAVVIKS-GLDNNIHLGTSLVDMYFKFREPA 165
Query: 305 EAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDL 364
A +V M L +V+ W + ++ + A RV Q L E D + +
Sbjct: 166 SAGQVFDEMPLR-DVVSWNTMVSGYCLCGDLESARRVFDQML-----ERDVISWNAMIGG 219
Query: 365 YTMNEKWEGAERV 377
Y N K+ A V
Sbjct: 220 YVQNGKYSDAIEV 232
>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
Length = 651
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 144/409 (35%), Positives = 231/409 (56%), Gaps = 22/409 (5%)
Query: 1 MQLFSQMHRQSVPSDSFSILHI----------LKSCTHFNNLTVIHHLHSHILKLGFISH 50
+ LFS+ R++ S +F + I +C+ + H+H+ +K G
Sbjct: 126 LTLFSRFRRRNPHSFTFLLASISNHLNAAGPSASACSFLGS-----HVHALAVKAGAAGD 180
Query: 51 VYVATSLLHEYVVT-SFGFARKLFDELPE-RNAVTWNTMIKGYSKSGNVCEARDFFERMP 108
++V +L+H Y V+ G R++FDELP R+ +TWN ++ GY ++G + AR+ F+ MP
Sbjct: 181 LFVRNALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGYVRAGMMTVAREVFDEMP 240
Query: 109 LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLM 168
+R+ SWS ++ Y+ + L +FR M+ +G+ P+Q + LS + LG L
Sbjct: 241 VRDEISWSTLVGGYVKEEELEVALGVFRNMV-EQGVRPNQAAVVTALSAAARLGL--LEH 297
Query: 169 GKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAH 228
GK H + ++ + + LVDMYAKCG + A VF+ M R+V +W A+ICG A
Sbjct: 298 GKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAA 357
Query: 229 RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQ 288
G DA+ LFE + G+ P +TF GVL C +GLV EGR+YFK+I E+Y +EP ++
Sbjct: 358 HGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEME 417
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348
HYGCMVDL G+AG + EA E+I M + P+ ++WG+ L++CK H D+ V + + +
Sbjct: 418 HYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIEL 477
Query: 349 VKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
P + G + L+ +Y KW+ VRKLM ++ K+ G S++ +
Sbjct: 478 -DPTHS-GYYVLLSGIYAKANKWDEVREVRKLMSSRGTNKSAGWSLMEA 524
>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 146/416 (35%), Positives = 228/416 (54%), Gaps = 41/416 (9%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG------- 67
+ F+ + K+CT +H+H++K G V++ ++ + Y SFG
Sbjct: 129 NKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMY--GSFGEVEGARR 186
Query: 68 ---------------------------FARKLFDELPERNAVTWNTMIKGYSKSGNVCEA 100
A++LF + ++N +WN M+ G +K G + EA
Sbjct: 187 MLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEA 246
Query: 101 RDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSH 160
R+ F M +N SWSAMI Y+ G Y L++F M E + P + + +VL+ C++
Sbjct: 247 RELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVM-QREEIRPRKFVLSSVLAACAN 305
Query: 161 LGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWT 220
LG+ L G+ H ++ N + + T LVDMYAKCG L A VFE ME++ V +W
Sbjct: 306 LGA--LDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWN 363
Query: 221 ALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE 280
A+ICG G +EDA+ LF MQ +PN +T GVL+AC H+G+VDEG + F ++E
Sbjct: 364 AMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEV 423
Query: 281 YDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAER 340
Y +EP ++HYGC+VDL G+AG L EA EV+ +M +EP+ +WG+ L AC++H ++ ER
Sbjct: 424 YGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGER 483
Query: 341 VIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
V K L + +P+N G + L+ ++Y +W+ VRKLM + V+ + G S+I
Sbjct: 484 VGKILLEL-EPQNS-GRYALLSNIYARAGRWDDVANVRKLMKERGVKTSTGISMID 537
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 91/370 (24%), Positives = 161/370 (43%), Gaps = 53/370 (14%)
Query: 33 TVIHHL---HSHILKLGFISHVYVATSLLHEYVVTSF---GFARKLFDELPERNAVTWNT 86
T +HHL H+ L+ G YV+ +L+ Y F FA K+F+ +P N +N
Sbjct: 41 TSLHHLKQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNI 100
Query: 87 MIKGYSKSGNVCEARDFFERMPLR----NVASWSAMIAAYLNAGAYDPGLKLFREMISNE 142
+IKG ++ C+A + +M + N ++ + A A A + G+++ +I +
Sbjct: 101 IIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIK-Q 159
Query: 143 GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLK 202
GL+ D A G GS G + G ++ + + ++D Y KCG ++
Sbjct: 160 GLSGDVHIRSA---GIQMYGSFGEVEGARR---MLGEDGNSDVICFNAMIDGYLKCGEVE 213
Query: 203 YALMVFELMEERNV-------------------------------ISWTALICGSAHRGY 231
A +F ME++NV ISW+A+I G GY
Sbjct: 214 AAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGY 273
Query: 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG 291
++AL +F +MQ ++P + + VL AC + G +D+GR ++ + +
Sbjct: 274 YKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTA 333
Query: 292 CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351
+VD++ K G L+ A++V M + V W + + H + AE I+ +M K
Sbjct: 334 -LVDMYAKCGRLDMAWDVFEKME-KKEVFTWNAMICGLGMHGR---AEDAIELFFKMQKQ 388
Query: 352 ENDGGVFTLI 361
+ TL+
Sbjct: 389 KFRPNGITLL 398
>gi|62321090|dbj|BAD94184.1| hypothetical protein [Arabidopsis thaliana]
Length = 577
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 149/428 (34%), Positives = 234/428 (54%), Gaps = 40/428 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L+ +M R SV S++ ++K+ + + L +HI K GF HV + T+L+
Sbjct: 111 LELYVRMLRDSVSPSSYTYSSLVKASSFASRFG--ESLQAHIWKFGFGFHVKIQTTLIDF 168
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTM-------------------------------I 88
Y T ARK+FDE+PER+ + W TM I
Sbjct: 169 YSATGGIREARKVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLI 228
Query: 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ 148
GY GN+ +A F +MP++++ SW+ MI Y Y + +F +M+ EG+ PD+
Sbjct: 229 NGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMM-EEGIIPDE 287
Query: 149 MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVF 208
+T+ V+S C+HLG L +GK H + ++N + L+ I + LVDMY+KCG L+ AL+VF
Sbjct: 288 VTMSTVISACAHLGV--LEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVF 345
Query: 209 ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
+ ++N+ W ++I G A G++++AL +F M+ VKPN +TF V TAC H GLVD
Sbjct: 346 FNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVD 405
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
EGR+ ++ + ++Y + ++HYG MV LF KAG + EA E+I M EPN +IWG+ L
Sbjct: 406 EGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLDG 465
Query: 329 CKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRK 388
C+ HK +AE + L +++P N G F L+ +Y +W +R M + K
Sbjct: 466 CRIHKNLVIAEIAFNK-LMVLEPMNSGYYFLLV-SMYAEQNRWRDVAEIRGRMRELGIEK 523
Query: 389 -ARGSSVI 395
G+S I
Sbjct: 524 ICPGTSSI 531
>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 138/392 (35%), Positives = 227/392 (57%), Gaps = 6/392 (1%)
Query: 5 SQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-V 63
SQ + D F+ ++K+C + +H+ K G SH+ +L+ Y
Sbjct: 84 SQTSEDLILPDEFTFPFVVKACARLGLHNLGKQVHAQFFKFGKKSHLITENALIDMYTKC 143
Query: 64 TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL 123
+ A LFDE+ ER A++WN +I G+ + G + AR F+ MP R + SW+A+I+ Y
Sbjct: 144 DNLLDAHNLFDEMHERGAISWNGIISGHVRLGQMRRARALFDEMPNRTIVSWTAIISGYT 203
Query: 124 NAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWEL 183
G+Y L +FREM G+ PD+ +I +VL C+ LG+ L GK H F +N
Sbjct: 204 RIGSYIDALDVFREM-QIAGIEPDEASIISVLPACAKLGA--LETGKWIHMFCARNGLLR 260
Query: 184 NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQ 243
I L++MY KCG + A +F+ M R+VISW+ +I G A+ G +A+++FE M+
Sbjct: 261 RTCICNALIEMYTKCGCIDQACQLFDQMRGRDVISWSTMIGGLANHGKVREAIAIFERMK 320
Query: 244 ATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFL 303
T +KPN +TF G+L+AC H G +EG YF + +++ +EP I+HYG +VDL G+AG L
Sbjct: 321 QTNIKPNGITFVGLLSACAHAGFWEEGLMYFDTMKKDFHIEPEIEHYGSLVDLLGRAGRL 380
Query: 304 EEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICD 363
+A +++ M ++P+ IWGS L++C+ H ++A + + L ++P+ D G + L+ +
Sbjct: 381 SQALDIVEKMPMKPDSKIWGSLLSSCRTHCNIEVA-VIAMEHLEELEPD-DTGNYVLLSN 438
Query: 364 LYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+Y KW+ R+RKL+ ++ ++K G S+I
Sbjct: 439 IYADLGKWDDVSRMRKLVRSKRMKKTPGCSLI 470
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 122/297 (41%), Gaps = 60/297 (20%)
Query: 68 FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
+A LF E+ + NA +N MI+ + + DF+++M
Sbjct: 38 YASFLFKEVIDPNAYLYNAMIRACTHNSMYSLTIDFYKQM-------------------- 77
Query: 128 YDPGLKLFREMISNEGLT-PDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ 186
L+ +R ++E L PD+ T V+ C+ LG L GK H K + +
Sbjct: 78 ----LREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNL--GKQVHAQFFKFGKKSHLI 131
Query: 187 IATILVDMYAKC-------------------------------GFLKYALMVFELMEERN 215
L+DMY KC G ++ A +F+ M R
Sbjct: 132 TENALIDMYTKCDNLLDAHNLFDEMHERGAISWNGIISGHVRLGQMRRARALFDEMPNRT 191
Query: 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275
++SWTA+I G G DAL +F MQ G++P+E + VL AC G ++ G K+
Sbjct: 192 IVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISVLPACAKLGALETG-KWIH 250
Query: 276 MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
M L R +++++ K G +++A ++ MR +VI W + + H
Sbjct: 251 MFCARNGLLRRTCICNALIEMYTKCGCIDQACQLFDQMRGR-DVISWSTMIGGLANH 306
Score = 37.7 bits (86), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 33/172 (19%), Positives = 70/172 (40%), Gaps = 19/172 (11%)
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR 229
K H ++K + + T ++D+ + + YA +F+ + + N + A+I H
Sbjct: 5 KKNHALVIKYALSQSNFLVTKMIDVCDRNEDMDYASFLFKEVIDPNAYLYNAMIRACTHN 64
Query: 230 GYSEDALSLFEMM---------QATGVKPNEMTFTGVLTACVHTGLVDEGR----KYFKM 276
+ ++ M + P+E TF V+ AC GL + G+ ++FK
Sbjct: 65 SMYSLTIDFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNLGKQVHAQFFK- 123
Query: 277 IDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
+ + + ++D++ K L +A+ + M E I W ++
Sbjct: 124 ----FGKKSHLITENALIDMYTKCDNLLDAHNLFDEMH-ERGAISWNGIISG 170
>gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310
gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana]
gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 530
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 140/384 (36%), Positives = 223/384 (58%), Gaps = 8/384 (2%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLF 73
D+F+ +LK +++ +H ++ GF S V+V T L+ Y G ARK+F
Sbjct: 115 DTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMF 174
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP--LRNVASWSAMIAAYLNAGAYDPG 131
DE+ ++ WN ++ GY K G + EAR E MP +RN SW+ +I+ Y +G
Sbjct: 175 DEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEA 234
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
+++F+ M+ E + PD++T+ AVLS C+ LGS L +G+ ++ + +
Sbjct: 235 IEVFQRMLM-ENVEPDEVTLLAVLSACADLGS--LELGERICSYVDHRGMNRAVSLNNAV 291
Query: 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE 251
+DMYAK G + AL VFE + ERNV++WT +I G A G+ +AL++F M GV+PN+
Sbjct: 292 IDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPND 351
Query: 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR 311
+TF +L+AC H G VD G++ F + +Y + P I+HYGCM+DL G+AG L EA EVI+
Sbjct: 352 VTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIK 411
Query: 312 TMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKW 371
+M + N IWGS LAA H ++ ER + + +++ +P N G + L+ +LY+ +W
Sbjct: 412 SMPFKANAAIWGSLLAASNVHHDLELGERALSELIKL-EPNNSGN-YMLLANLYSNLGRW 469
Query: 372 EGAERVRKLMLNQNVRKARGSSVI 395
+ + +R +M V+K G S I
Sbjct: 470 DESRMMRNMMKGIGVKKMAGESSI 493
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 141/395 (35%), Positives = 224/395 (56%), Gaps = 35/395 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F ++ ++ DSF+I+ +L +CT +L +H I+++G + +V+V TSL
Sbjct: 198 IDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSL--- 254
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ Y+K GN+ +AR F+ MP +++ SW AMI
Sbjct: 255 ---------------------------VDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQ 287
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y G + LF +M E + PD T+ VLS C+ LG+ L +G+ G + +NE
Sbjct: 288 GYALNGLPKEAIDLFLQM-QRENVKPDCYTVVGVLSACARLGA--LELGEWVSGLVDRNE 344
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ N + T L+D+YAKCG + A VF+ M+E++ + W A+I G A GY + + LF
Sbjct: 345 FLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFG 404
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
++ G+KP+ TF G+L C H GLVDEGR+YF + + L P I+HYGCMVDL G+A
Sbjct: 405 QVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRA 464
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G L+EA+++IR M +E N I+WG+ L AC+ H+ +AE +KQ + + +P N G + L
Sbjct: 465 GLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIEL-EPWNSGN-YVL 522
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y+ N KW+ A +VR M + ++K G S I
Sbjct: 523 LSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWI 557
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/365 (28%), Positives = 183/365 (50%), Gaps = 41/365 (11%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++ + M + ++F+ +LK+C +L + +H+ ++K GF V+V TSL
Sbjct: 97 IEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSL--- 153
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ Y+K G + +A F+ +P +NV SW+A+I+
Sbjct: 154 ---------------------------VCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIIS 186
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y+ G + + +FR ++ L PD TI VLS C+ LG + G+ H I++
Sbjct: 187 GYIGVGKFREAIDMFRRLLEMN-LAPDSFTIVRVLSACTQLGDLN--SGEWIHKCIMEMG 243
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
N + T LVDMYAKCG ++ A VF+ M E++++SW A+I G A G ++A+ LF
Sbjct: 244 MVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFL 303
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE-EYDLEPRIQHYGCMVDLFGK 299
MQ VKP+ T GVL+AC G ++ G ++D E+ P + ++DL+ K
Sbjct: 304 QMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGT--ALIDLYAK 361
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-VKPENDGGVF 358
G + A+EV + M+ E + ++W + ++ + ++ + Q ++ +KP DG F
Sbjct: 362 CGSMSRAWEVFKGMK-EKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKP--DGNTF 418
Query: 359 T-LIC 362
L+C
Sbjct: 419 IGLLC 423
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 117/227 (51%), Gaps = 5/227 (2%)
Query: 100 ARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCS 159
R F ++ N+ W+ MI ++ +D ++ F ++ +EG P+ T VL C+
Sbjct: 65 TRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIE-FYGLMRSEGFLPNNFTFPFVLKACA 123
Query: 160 HLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISW 219
L + L +G H +VK ++ + + T LV +YAKCG+L+ A VF+ + ++NV+SW
Sbjct: 124 RL--LDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSW 181
Query: 220 TALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE 279
TA+I G G +A+ +F + + P+ T VL+AC G ++ G K I
Sbjct: 182 TAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCI-M 240
Query: 280 EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
E + + +VD++ K G +E+A V M E +++ WG+ +
Sbjct: 241 EMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMP-EKDIVSWGAMI 286
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 191 LVDMYAKCGF----LKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
L++M +C F Y +F +++ N+ W +I G +DA+ + +M++ G
Sbjct: 48 LLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEG 107
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE-EYDLEPRIQHYGCMVDLFGKAGFLEE 305
PN TF VL AC + G K ++ + +D + ++ +V L+ K G+LE+
Sbjct: 108 FLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKT--SLVCLYAKCGYLED 165
Query: 306 AYEVIRTMRLEPNVIIWGS----FLAACKEHKQFDMAERVIKQAL 346
A++V + + NV+ W + ++ K + DM R+++ L
Sbjct: 166 AHKVFDDIP-DKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNL 209
>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like, partial [Cucumis sativus]
Length = 610
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 129/327 (39%), Positives = 205/327 (62%), Gaps = 4/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
ARKLFD +P R+ ++WNTM+ GY+ +G+V FE MP RNV SW+ +I Y + G +
Sbjct: 239 ARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCF 298
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L+ F+ M+ + + P+ T+ VLS C+ LG++ L GK H + ++ + +
Sbjct: 299 FEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDL--GKWVHVYAATIGFKGSIYVG 356
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+DMY+KCG ++ A+ VFE M+ +++I+W ++ICG A G DAL+LF M+ G K
Sbjct: 357 NALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEK 416
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+ +TF GVL +C H GLV+EG YF + EY + P+I+HYGCMVDLFG+AG L+ A E
Sbjct: 417 PDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIE 476
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
++ M +E + +IW + L AC+ +K D+AE + Q L +++P+N + L+ ++Y
Sbjct: 477 FVKRMPMEADAVIWAALLGACRIYKNIDLAELAL-QKLIVLEPKNPAN-YVLLSNIYGDL 534
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
+W+ R++ LM + +K G S+I
Sbjct: 535 GRWKDVARLKILMRDTGSKKLPGCSLI 561
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 99/390 (25%), Positives = 163/390 (41%), Gaps = 70/390 (17%)
Query: 5 SQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-V 63
+Q H + V + F + +L+SC + ++ + + I+ GF + YVA +++ +V +
Sbjct: 16 AQKHPRWVLEEHF--ISLLRSC---KTVALLQKVQAQIITHGFQYNGYVAPNVVTSWVGL 70
Query: 64 TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA----SWSAMI 119
AR LFD P+ WN + +GY + E F +M +V ++ ++
Sbjct: 71 KQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVL 130
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQM---TIGAVLSGCSHLGS-----VGLL---- 167
+ GA+ G ++ E+I GL +Q T+ V SG +GS VG+L
Sbjct: 131 KSCAKIGAFVEGEEIHCEVIKG-GLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNI 189
Query: 168 --MGKSAHGFIVKNEWELNEQIA-----------TILVDMYAKCGFLKYALMVFELM--- 211
G+I+ N L ++ I+V Y + G +K A +F+ M
Sbjct: 190 VAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYR 249
Query: 212 ----------------------------EERNVISWTALICGSAHRGYSEDALSLFEMMQ 243
ERNV SW LI G AH G + L F+ M
Sbjct: 250 DTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRML 309
Query: 244 ATG-VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
G V PN+ T VL+AC G +D G K+ + + I ++D++ K G
Sbjct: 310 IDGLVVPNDATLVTVLSACARLGALDLG-KWVHVYAATIGFKGSIYVGNALIDMYSKCGL 368
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
+E A EV +M L+ ++I W S + H
Sbjct: 369 IENAMEVFESMDLK-DLITWNSMICGLATH 397
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 105/244 (43%), Gaps = 46/244 (18%)
Query: 12 VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGF--- 68
VP+D+ +++ +L +C L + +H + +GF +YV +L+ Y + G
Sbjct: 315 VPNDA-TLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMY--SKCGLIEN 371
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A ++F+ + ++ +TWN+MI G + G +A F +M +
Sbjct: 372 AMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKI------------------- 412
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
G PD +T VL C+HLG V G S +V NE+ + QI
Sbjct: 413 -------------NGEKPDGITFIGVLCSCTHLGLVE--EGTSYFNSMV-NEYSIAPQIE 456
Query: 189 --TILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
+VD++ + G L A+ + M E + + W AL+ A R Y L+ + +
Sbjct: 457 HYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALL--GACRIYKNIDLAELALQKLI 514
Query: 246 GVKP 249
++P
Sbjct: 515 VLEP 518
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 9/192 (4%)
Query: 163 SVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTAL 222
+V LL A I+ + ++ N +A +V + + +A +F+ + V W A+
Sbjct: 37 TVALLQKVQAQ--IITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDPKVELWNAI 94
Query: 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD 282
G H + + + LF M++ V+PN TF VL +C G EG + + +
Sbjct: 95 SRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKG-G 153
Query: 283 LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVI 342
LE ++D++ + AY++ M LE N++ W S ++ + +A R+
Sbjct: 154 LEGNQFVATTLIDVYSGGRAIGSAYKLFVGM-LERNIVAWTSMISGYILCNRVALARRLF 212
Query: 343 KQALRMVKPEND 354
A PE D
Sbjct: 213 DLA-----PERD 219
>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
Length = 566
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 139/403 (34%), Positives = 234/403 (58%), Gaps = 16/403 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF M + V +D +++ ++ +CT + ++ ++ +I VY+ +L
Sbjct: 173 LALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTL--- 229
Query: 61 YVVTSFG------FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVAS 114
V FG A K+F + RN VT N MI Y+K ++ AR F+++P +++ S
Sbjct: 230 --VDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLIS 287
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
WS+MI+ Y A + L++FR+M + PD + I +V+S C+HLG++ L GK H
Sbjct: 288 WSSMISGYSQANHFSDALEIFRQM-QRAKVKPDAIVIASVVSSCAHLGALDL--GKWVHE 344
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
++ +N + + + L+DMY KCG K AL VF+ M+E++ +SW ++I G A+ G+ ++
Sbjct: 345 YVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKE 404
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
+L+LF+ M G +PN +TF GVL AC + LV+EG +F+ + Y LEP+++HYGC+V
Sbjct: 405 SLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVV 464
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
DL G+AG LE+A I M ++P+ ++W L +C H +AE V K+ L ++P N
Sbjct: 465 DLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKK-LNELEPSNS 523
Query: 355 GGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
G +TL+ + Y +W A VR+ M + +VRK+ G S + +
Sbjct: 524 GN-YTLLSNAYASAHRWSEAMNVRQCMADTDVRKSPGCSAVEA 565
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 158/347 (45%), Gaps = 69/347 (19%)
Query: 12 VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT-SFGFAR 70
VP D+ + ILK+C N L +H+HI KLG +S ++V+ SL+H Y + +AR
Sbjct: 84 VP-DNLTFPFILKACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYAR 142
Query: 71 KLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDP 130
+FDE+ ++ V+WN++I GYS+ +
Sbjct: 143 SVFDEMVVKDVVSWNSLICGYSQCNR-------------------------------FKD 171
Query: 131 GLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATI 190
L LF+ ++ NEG+ D++T+ V+S C+ LG M +I E++ +
Sbjct: 172 ILALFK-LMQNEGVKADKVTMIKVVSACTRLGDYS--MADYMVRYIEDYCIEVDVYLGNT 228
Query: 191 LVDMYAKCGFLKYALMVFELMEERNV-------------------------------ISW 219
LVD + + G L+ A VF M+ RN+ ISW
Sbjct: 229 LVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISW 288
Query: 220 TALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE 279
+++I G + + DAL +F MQ VKP+ + V+++C H G +D G+ + +
Sbjct: 289 SSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRR 348
Query: 280 EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
+++ ++D++ K G +EA +V + M+ E + + W S +
Sbjct: 349 N-NIKADTIMENSLIDMYMKCGSAKEALQVFKEMK-EKDTLSWNSII 393
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 146/318 (45%), Gaps = 44/318 (13%)
Query: 32 LTVIHHLHSHILKLGFISHVYVATSLLHEYVV--TSFGFARKLFDELPERNAVTWNTMIK 89
+ I LH++ + G + Y + +L Y + FA K+FD++ WN +I+
Sbjct: 1 MEAIKRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIR 60
Query: 90 GYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQM 149
G ++S +A F+++ G+ PD +
Sbjct: 61 GLAQSDAPADAIAFYKKA--------------------------------QGGGMVPDNL 88
Query: 150 TIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFE 209
T +L C+ + ++ G+ H I K + ++ L+ +YA CG L YA VF+
Sbjct: 89 TFPFILKACARINALN--EGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFD 146
Query: 210 LMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG---L 266
M ++V+SW +LICG + +D L+LF++MQ GVK +++T V++AC G +
Sbjct: 147 EMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSM 206
Query: 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
D +Y E+Y +E + +VD FG+ G L+ A +V M++ N++ + +
Sbjct: 207 ADYMVRYI----EDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVR-NIVTMNAMI 261
Query: 327 AACKEHKQFDMAERVIKQ 344
AA + + A ++ Q
Sbjct: 262 AAYAKGQDIVSARKIFDQ 279
>gi|359491588|ref|XP_002281032.2| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g61800 [Vitis vinifera]
Length = 576
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 136/395 (34%), Positives = 229/395 (57%), Gaps = 7/395 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+F +M R SVP D+ + LK+C+ L++ LHS K GF + ++V +L+H Y
Sbjct: 116 IFVRMRRLSVPPDTHTFPFCLKACSLLPALSLAQTLHSQAFKFGFGADLFVCNTLIHVYS 175
Query: 63 VTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
V A ++F+E ++ V++N +I G+ K G+ AR F++MP+R+ SW ++A
Sbjct: 176 VNKHLHHACQVFNETSLKDVVSYNALIGGFIKVGDTDRARRLFDKMPIRDAVSWGTLLAG 235
Query: 122 YLNAGAYD-PGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y +G ++LF M+ + + PD + + + LS C+ LG L GKS H +I +N
Sbjct: 236 YAQSGDLCMDAIQLFNRMLIST-VRPDNIALVSALSACAQLGE--LEQGKSIHVYIKQNR 292
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+N ++T LVD+YAKCG ++ A +FE ++N+ +W AL+ G G +L F
Sbjct: 293 IPINAFLSTGLVDLYAKCGCIETAREIFESSPDKNLFTWNALLVGLGMHGRGHLSLHYFS 352
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M G+KP+ ++F G+L C H GLV E R +F+ ++ Y + ++HYGCM DL G+A
Sbjct: 353 RMIEAGIKPDGVSFLGILVGCGHAGLVCEARNFFQEMEVVYRVPRELKHYGCMADLLGRA 412
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G + EA E+I M + +V +WG L C+ H ++AE+ + + + PE+D GV+++
Sbjct: 413 GLIREAMEMIERMPMGGDVFVWGGVLGGCRIHGNVEIAEKAAENVMAL-NPEDD-GVYSI 470
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ D+Y +WE R+R+LM ++ V+K G S++
Sbjct: 471 MADIYANAGRWEDVARIRRLMHSRQVKKNPGCSLV 505
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 86/368 (23%), Positives = 158/368 (42%), Gaps = 31/368 (8%)
Query: 9 RQSVPSDSFSILHILKSCT---HFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS 65
R+ SD +I++ ++ T +L +H +H+H + G + ++ +SLL ++T+
Sbjct: 2 RKEDGSDGNTIVNTSEAITVIRQCKSLKQLHQVHAHTITTGLLWGLH-HSSLLLTNILTA 60
Query: 66 F------------------GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERM 107
F G+A +F+ +P + +NTMI+ ++ + A F RM
Sbjct: 61 FTALLPTTNASPTTPAALTGYALSVFNRIPNPSTFGYNTMIRAHTLLSSPLAALVIFVRM 120
Query: 108 PLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL 167
+V + L A + P L L + + S + GA L C+ L V +
Sbjct: 121 RRLSVPPDTHTFPFCLKACSLLPALSLAQTLHSQA----FKFGFGADLFVCNTLIHVYSV 176
Query: 168 MGKSAHGFIVKNEWELNEQIA-TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGS 226
H V NE L + ++ L+ + K G A +F+ M R+ +SW L+ G
Sbjct: 177 NKHLHHACQVFNETSLKDVVSYNALIGGFIKVGDTDRARRLFDKMPIRDAVSWGTLLAGY 236
Query: 227 AHRG-YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP 285
A G DA+ LF M + V+P+ + L+AC G +++G+ I +
Sbjct: 237 AQSGDLCMDAIQLFNRMLISTVRPDNIALVSALSACAQLGELEQGKSIHVYIKQNRIPIN 296
Query: 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQA 345
G +VDL+ K G +E A E+ + + N+ W + L H + ++ +
Sbjct: 297 AFLSTG-LVDLYAKCGCIETAREIFESSP-DKNLFTWNALLVGLGMHGRGHLSLHYFSRM 354
Query: 346 LRM-VKPE 352
+ +KP+
Sbjct: 355 IEAGIKPD 362
>gi|193806402|sp|Q56X05.2|PPR15_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06145; AltName: Full=Protein EMBRYO DEFECTIVE 1444
Length = 577
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 149/428 (34%), Positives = 234/428 (54%), Gaps = 40/428 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L+ +M R SV S++ ++K+ + + L +HI K GF HV + T+L+
Sbjct: 111 LELYVRMLRDSVSPSSYTYSSLVKASSFASRFG--ESLQAHIWKFGFGFHVKIQTTLIDF 168
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTM-------------------------------I 88
Y T ARK+FDE+PER+ + W TM I
Sbjct: 169 YSATGRIREARKVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLI 228
Query: 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ 148
GY GN+ +A F +MP++++ SW+ MI Y Y + +F +M+ EG+ PD+
Sbjct: 229 NGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMME-EGIIPDE 287
Query: 149 MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVF 208
+T+ V+S C+HLG L +GK H + ++N + L+ I + LVDMY+KCG L+ AL+VF
Sbjct: 288 VTMSTVISACAHLGV--LEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVF 345
Query: 209 ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
+ ++N+ W ++I G A G++++AL +F M+ VKPN +TF V TAC H GLVD
Sbjct: 346 FNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVD 405
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
EGR+ ++ + ++Y + ++HYG MV LF KAG + EA E+I M EPN +IWG+ L
Sbjct: 406 EGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLDG 465
Query: 329 CKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRK 388
C+ HK +AE + L +++P N G F L+ +Y +W +R M + K
Sbjct: 466 CRIHKNLVIAEIAFNK-LMVLEPMNSGYYFLLV-SMYAEQNRWRDVAEIRGRMRELGIEK 523
Query: 389 -ARGSSVI 395
G+S I
Sbjct: 524 ICPGTSSI 531
>gi|357112521|ref|XP_003558057.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 656
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 144/399 (36%), Positives = 236/399 (59%), Gaps = 7/399 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +FS M R+ D ++ ++ +C + H +++ G S V V +L+H
Sbjct: 251 LHVFSCMRRERWHVDEPLMVSVVSACAQSEVIQNGQMCHGLVIRAGLCSQVNVQNALIHM 310
Query: 61 YVVTSFGFA-RKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y FA R+LFD + +WN+MI GY K+G+V +A F MP ++ SWS +I
Sbjct: 311 YSSCLDVFAARRLFDSGECLDQYSWNSMIAGYLKNGHVKDAMALFSAMPNKDNVSWSTVI 370
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ + L +F M + +G+ PD++TI +V+S C++L + L GKS H +I +N
Sbjct: 371 SGCVQNNQSSDALTVFDNMQA-QGIRPDEVTIVSVISACTNLSA--LEKGKSVHEYIKQN 427
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
++ ++ + T L++MY KCG L+ AL F +MEE+ W A+I G A G +L +F
Sbjct: 428 QYYVSLVLGTSLINMYMKCGCLEAALEAFNIMEEKGTPCWNAVIVGLAMNGLVMKSLDMF 487
Query: 240 EMMQATGV-KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
M+A+ PNE+TFTGVL+AC H GLVDEGR +FK++ Y + P I+HYGCMVDL G
Sbjct: 488 SEMEASDTATPNEITFTGVLSACRHAGLVDEGRHFFKLMQHRYQIVPNIRHYGCMVDLLG 547
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG+++EA ++I++M + P+V WG+ L AC +H ++++ ERV ++ + P +D G
Sbjct: 548 RAGYVKEAEDMIQSMPMSPDVPAWGALLGACWKHGEYEVGERVGRKLVNR-DPLHD-GFQ 605
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
T++ ++Y W+ + +R M ++V+K G SV+ S
Sbjct: 606 TMLSNIYAKEGMWQSVDDLRGSMKQRHVQKVSGHSVVKS 644
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/383 (22%), Positives = 165/383 (43%), Gaps = 80/383 (20%)
Query: 13 PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGF-ARK 71
P DS++ + +C ++ +H+H + GF ++Y+ +L+ Y + AR+
Sbjct: 100 PPDSYTHPILAAACASRKDVIEGRQVHAHAVSHGFGDNLYLRNALIFMYSACGCLWDARR 159
Query: 72 LFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRN-------------------- 111
+FD P +AV+WNT++ Y +G+V +A + F +MP RN
Sbjct: 160 VFDAGPVWDAVSWNTILAAYVHAGDVDQAVEVFAQMPKRNATAVSSMVSLFGRRGMVDEA 219
Query: 112 -----------VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSH 160
+ +W+AMI+ + + L +F M E D+ + +V+S C+
Sbjct: 220 RRVFDAAECRDIFTWTAMISCFERNDMFAEALHVFSCM-RRERWHVDEPLMVSVVSACAQ 278
Query: 161 LGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC---------------------- 198
S + G+ HG +++ + L+ MY+ C
Sbjct: 279 --SEVIQNGQMCHGLVIRAGLCSQVNVQNALIHMYSSCLDVFAARRLFDSGECLDQYSWN 336
Query: 199 ---------GFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP 249
G +K A+ +F M ++ +SW+ +I G S DAL++F+ MQA G++P
Sbjct: 337 SMIAGYLKNGHVKDAMALFSAMPNKDNVSWSTVISGCVQNNQSSDALTVFDNMQAQGIRP 396
Query: 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHY------GCMVDLFGKAGFL 303
+E+T V++AC + +++G+ + I + Q+Y +++++ K G L
Sbjct: 397 DEVTIVSVISACTNLSALEKGKSVHEYIKQN-------QYYVSLVLGTSLINMYMKCGCL 449
Query: 304 EEAYEVIRTMRLEPNVIIWGSFL 326
E A E M E W + +
Sbjct: 450 EAALEAFNIME-EKGTPCWNAVI 471
>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 652
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 129/327 (39%), Positives = 205/327 (62%), Gaps = 4/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
ARKLFD +P R+ ++WNTM+ GY+ +G+V FE MP RNV SW+ +I Y + G +
Sbjct: 281 ARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCF 340
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L+ F+ M+ + + P+ T+ VLS C+ LG++ L GK H + ++ + +
Sbjct: 341 FEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDL--GKWVHVYAATIGFKGSIYVG 398
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+DMY+KCG ++ A+ VFE M+ +++I+W ++ICG A G DAL+LF M+ G K
Sbjct: 399 NALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEK 458
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+ +TF GVL +C H GLV+EG YF + EY + P+I+HYGCMVDLFG+AG L+ A E
Sbjct: 459 PDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIE 518
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
++ M +E + +IW + L AC+ +K D+AE + Q L +++P+N + L+ ++Y
Sbjct: 519 FVKRMPMEADAVIWAALLGACRIYKNIDLAELAL-QKLIVLEPKNPAN-YVLLSNIYGDL 576
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
+W+ R++ LM + +K G S+I
Sbjct: 577 GRWKDVARLKILMRDTGSKKLPGCSLI 603
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 99/391 (25%), Positives = 163/391 (41%), Gaps = 70/391 (17%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV- 62
+Q H + V + F + +L+SC + ++ + + I+ GF + YVA +++ +V
Sbjct: 57 LTQKHPRWVLEEHF--ISLLRSC---KTVALLQKVQAQIITHGFQYNGYVAPNVVTSWVG 111
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA----SWSAM 118
+ AR LFD P+ WN + +GY + E F +M +V ++ +
Sbjct: 112 LKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLV 171
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQM---TIGAVLSGCSHLGS-----VGLL--- 167
+ + GA+ G ++ E+I GL +Q T+ V SG +GS VG+L
Sbjct: 172 LKSCAKIGAFVEGEEIHCEVIKG-GLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERN 230
Query: 168 ---MGKSAHGFIVKNEWELNEQIA-----------TILVDMYAKCGFLKYALMVFELM-- 211
G+I+ N L ++ I+V Y + G +K A +F+ M
Sbjct: 231 IVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPY 290
Query: 212 -----------------------------EERNVISWTALICGSAHRGYSEDALSLFEMM 242
ERNV SW LI G AH G + L F+ M
Sbjct: 291 RDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRM 350
Query: 243 QATG-VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
G V PN+ T VL+AC G +D G K+ + + I ++D++ K G
Sbjct: 351 LIDGLVVPNDATLVTVLSACARLGALDLG-KWVHVYAATIGFKGSIYVGNALIDMYSKCG 409
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
+E A EV +M L+ ++I W S + H
Sbjct: 410 LIENAMEVFESMDLK-DLITWNSMICGLATH 439
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 46/244 (18%)
Query: 12 VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGF--- 68
VP+D+ +++ +L +C L + +H + +GF +YV +L+ Y + G
Sbjct: 357 VPNDA-TLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMY--SKCGLIEN 413
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A ++F+ + ++ +TWN+MI G + G +A
Sbjct: 414 AMEVFESMDLKDLITWNSMICGLATHGCGADA---------------------------- 445
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L LF +M N G PD +T VL C+HLG V G S +V NE+ + QI
Sbjct: 446 ---LTLFHQMKIN-GEKPDGITFIGVLCSCTHLGLVE--EGTSYFNSMV-NEYSIAPQIE 498
Query: 189 --TILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
+VD++ + G L A+ + M E + + W AL+ A R Y L+ + +
Sbjct: 499 HYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALL--GACRIYKNIDLAELALQKLI 556
Query: 246 GVKP 249
++P
Sbjct: 557 VLEP 560
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 9/192 (4%)
Query: 163 SVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTAL 222
+V LL A I+ + ++ N +A +V + + +A +F+ + V W A+
Sbjct: 79 TVALLQKVQAQ--IITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDPKVELWNAI 136
Query: 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD 282
G H + + + LF M++ V+PN TF VL +C G EG + + +
Sbjct: 137 SRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKG-G 195
Query: 283 LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVI 342
LE ++D++ + AY++ M LE N++ W S ++ + +A R+
Sbjct: 196 LEGNQFVATTLIDVYSGGRAIGSAYKLFVGM-LERNIVAWTSMISGYILCNRVALARRLF 254
Query: 343 KQALRMVKPEND 354
A PE D
Sbjct: 255 DLA-----PERD 261
>gi|449459636|ref|XP_004147552.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Cucumis sativus]
gi|449484988|ref|XP_004157038.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Cucumis sativus]
Length = 495
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 146/399 (36%), Positives = 235/399 (58%), Gaps = 9/399 (2%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
Q Q R D+F+ +L SC + LH+ KLGF SHVYV T++L Y
Sbjct: 101 QPLRQFPRIPPSYDTFAYSFLLHSCADLELIGPGFQLHALTFKLGFPSHVYVQTAVLRMY 160
Query: 62 VVTSFGF-ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ F A K+FDE+P+R++VTWN +I G K G + ARD F++MP+R V SW+A+I
Sbjct: 161 AASGFLLDAMKVFDEMPDRSSVTWNVLITGLVKFGELKRARDVFDQMPMRTVVSWTAIID 220
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y ++ LF M+++ G+ P+++T+ + S+LG++ L +S H + K
Sbjct: 221 GYTRLNRHEEAAGLFWRMVAHFGMEPNEVTLLTIFPAISNLGALKLC--QSVHAYAEKKG 278
Query: 181 WELNE-QIATILVDMYAKCGFLKYALMVFELM--EERNVISWTALICGSAHRGYSEDALS 237
+++++ +IA L+D YAKCG + A VFE M E +N++SWT++I G G ++A+
Sbjct: 279 FKVSDVRIANSLIDCYAKCGCINSASKVFEEMSAEIKNLVSWTSIISGFTMHGMGKEAME 338
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
FE+M+ G +PN +TF +++AC H GLV+EG ++F+ + EY ++P I HYG ++D+
Sbjct: 339 SFEIMEKEGHEPNRVTFLSIVSACSHGGLVEEGLEFFEKMVAEYQIKPDIMHYGSLIDML 398
Query: 298 GKAGFLEEAYEVIRTMRLE-PNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
G+AG +EEA ++ + E +V+IW + L AC H MAERV ++ L M GG
Sbjct: 399 GRAGRIEEAEKIALEIPKEIASVVIWRTLLGACSFHGNVSMAERVTQRILNMEGAY--GG 456
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ +++ K+ AER R+LM + K G S++
Sbjct: 457 DYVLMSNIFAAAGKYGDAERWRRLMDSSKFSKIPGQSLV 495
>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 596
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 143/400 (35%), Positives = 229/400 (57%), Gaps = 44/400 (11%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFIS-HVYVATSLLH 59
M F +M R V ++ +++ +LK+ ++ +H L+ G + V++ +SL
Sbjct: 189 MTYFVEMKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIGSSL-- 246
Query: 60 EYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
+ Y K G +A+ F+ MP RNV +W+A+I
Sbjct: 247 ----------------------------VDMYGKCGCYDDAQKVFDEMPSRNVVTWTALI 278
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A Y+ ++ G+ +F EM+ ++ + P++ T+ +VLS C+H+G+ L G+ H +++KN
Sbjct: 279 AGYVQGRCFEKGMFVFEEMLKSD-VAPNEKTLSSVLSACAHVGA--LHRGRRVHCYVIKN 335
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
E+N + T L+D YAKCG L+ A++VFE + E+NV +WTA+I G A GY+ A+ LF
Sbjct: 336 SIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKNVYTWTAMINGFAAHGYAIGAVDLF 395
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M ++ V PNE+TF VL+AC H GLV+EGR+ F + E ++LEP+ HY CMVDLFG+
Sbjct: 396 HTMLSSHVSPNEVTFIVVLSACAHGGLVEEGRRLFLSMKERFNLEPKADHYACMVDLFGR 455
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDM----AERVIKQALRMVKPENDG 355
G LEEA +I M +EP +WG+ +C HK +++ A RVIK ++P + G
Sbjct: 456 KGLLEEAKALIERMPMEPTNAVWGALFGSCLIHKDYELGKYAASRVIK-----LQPSHSG 510
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+TL+ +LY+ ++ W+ RVRK M +Q V K+ G S I
Sbjct: 511 R-YTLLANLYSESQNWDDVARVRKQMKDQQVVKSPGCSWI 549
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 143/330 (43%), Gaps = 37/330 (11%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV 63
+ QM R V + +LK+ + H+HILK GF S ++V
Sbjct: 92 YRQMRRNGVVPSRHTFPPLLKAVFKLRDANPFQ-FHAHILKFGFDSDLFVR--------- 141
Query: 64 TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL 123
N++I GYS G F+ ++V SW+AMI ++
Sbjct: 142 ---------------------NSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFV 180
Query: 124 NAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK-NEWE 182
+ + F EM G+ ++MT+ +VL V G+S HGF ++
Sbjct: 181 RNDSSLEAMTYFVEM-KRSGVAANEMTVVSVLKATRKAEDVRF--GRSIHGFYLEAGRVR 237
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
+ I + LVDMY KCG A VF+ M RNV++WTALI G E + +FE M
Sbjct: 238 CDVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEM 297
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
+ V PNE T + VL+AC H G + GR+ + + +E ++D + K G
Sbjct: 298 LKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYVIKN-SIEINTTVGTTLIDFYAKCGC 356
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
LEEA V +R E NV W + + H
Sbjct: 357 LEEAILVFERLR-EKNVYTWTAMINGFAAH 385
>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
Length = 650
Score = 271 bits (692), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 133/388 (34%), Positives = 239/388 (61%), Gaps = 8/388 (2%)
Query: 10 QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGF 68
++V D +++ + C +L + LH + G V + +++ YV S
Sbjct: 218 KAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLEL 277
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A+ +F+ + + V+W TMI G+++ G + +AR F+ MP R+V W+A++A Y+
Sbjct: 278 AKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQG 337
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ LF EM ++ + P+++T+ +LS CS LG+ L MG H +I +++ L+ +
Sbjct: 338 KEAIALFHEMQESK-VDPNEITMVNLLSACSQLGA--LEMGMWVHHYIDRHQLYLSVALG 394
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
T LVDMYAKCG +K A+ +F+ + ++N ++WTA+ICG A+ G++++A+ F+ M G++
Sbjct: 395 TSLVDMYAKCGNIKKAICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQ 454
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+E+TF GVL+AC H GLV EGR++F ++ E+Y LE +++HY CM+DL G+AG L+EA +
Sbjct: 455 PDEITFIGVLSACCHAGLVKEGRQFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAEQ 514
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE-NDGGVFTLICDLYTM 367
++ TM ++P+ ++WG+ AC+ H + E K A+++V+ + +D G++ L+ ++Y
Sbjct: 515 LVNTMPMDPDAVVWGALFFACRMHGNITLGE---KAAMKLVELDPSDSGIYVLLANMYAE 571
Query: 368 NEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ A++VR +M + V K G S I
Sbjct: 572 ANMRKKADKVRVMMRHLGVEKVPGCSCI 599
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 100/374 (26%), Positives = 165/374 (44%), Gaps = 70/374 (18%)
Query: 10 QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT-SFGF 68
S D + +LK+C + H+ KLGF + V+V + +H + V+ S
Sbjct: 115 SSARPDHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGVHFWSVSGSMVL 174
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR+LFDE P R+ V+WNT+I GY +SG EA + F R+
Sbjct: 175 ARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRL--------------------- 213
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ + + PD++T+ +SGC+ +G + L GK H F+ ++
Sbjct: 214 ---------VEDGKAVRPDEVTMIGAVSGCAQMGDLEL--GKRLHEFVDSKGVRCTVRLM 262
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED-------------- 234
++DMY KCG L+ A VFE ++ + V+SWT +I G A G ED
Sbjct: 263 NAVMDMYVKCGSLELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVF 322
Query: 235 -----------------ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI 277
A++LF MQ + V PNE+T +L+AC G ++ G I
Sbjct: 323 PWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYI 382
Query: 278 DEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDM 337
D + L + +VD++ K G +++A + + + + N + W + + H D
Sbjct: 383 D-RHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIP-DKNALTWTAMICGLANHGHADE 440
Query: 338 A----ERVIKQALR 347
A +R+I L+
Sbjct: 441 AIEYFQRMIDLGLQ 454
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 95/210 (45%), Gaps = 9/210 (4%)
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
L L+R ++ + PD +T +L C+ L G + G + K + + +
Sbjct: 105 LPLYRALLCSSSARPDHLTFPFLLKACARLQYRPY--GAAVLGHVQKLGFSADVFVVNAG 162
Query: 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG--VKP 249
V ++ G + A +F+ R+V+SW LI G G +AL LF + G V+P
Sbjct: 163 VHFWSVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRP 222
Query: 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEV 309
+E+T G ++ C G ++ G++ + +D + + ++ ++D++ K G LE A V
Sbjct: 223 DEVTMIGAVSGCAQMGDLELGKRLHEFVDSK-GVRCTVRLMNAVMDMYVKCGSLELAKSV 281
Query: 310 IRTMRLEPNVIIWGSFLAACKEHKQFDMAE 339
+ V+ W + + H + M E
Sbjct: 282 FERID-NKTVVSWTTMIVG---HARLGMME 307
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 99/228 (43%), Gaps = 43/228 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF +M V + +++++L +C+ L + +H +I + V + TSL+
Sbjct: 341 IALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALGTSLVDM 400
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + A +F E+P++NA+TW MI G + G+ EA ++F+RM
Sbjct: 401 YAKCGNIKKAICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRM------------ 448
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF--IV 177
+ GL PD++T VLS C H G V K F ++
Sbjct: 449 --------------------IDLGLQPDEITFIGVLSACCHAGLV-----KEGRQFFSLM 483
Query: 178 KNEWELNEQIA--TILVDMYAKCGFLKYALMVFELME-ERNVISWTAL 222
++ L ++ + ++D+ + G L A + M + + + W AL
Sbjct: 484 HEKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMDPDAVVWGAL 531
>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
Length = 549
Score = 271 bits (692), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 153/428 (35%), Positives = 242/428 (56%), Gaps = 40/428 (9%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF +M + + F++ +LK+C + +H +KLG S V+V +L+ YV
Sbjct: 75 LFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYV 134
Query: 63 VTSF-GFARKLFDELP----------------------------------ERNAVTWNTM 87
V ARKLFD++ E+N V+W +M
Sbjct: 135 VCGLIHCARKLFDDITDKTLIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSM 194
Query: 88 IKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD 147
I Y++ G++ AR F++MP +NV SW++MI+ YL G Y L LF +M N + PD
Sbjct: 195 ISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKM-RNSRVVPD 253
Query: 148 QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMV 207
+ T+ ++L+ CS LG L+MGK H +I+ N+ + L+DMYAKCG + AL +
Sbjct: 254 EATLVSILAACSQLGD--LVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDI 311
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
F M +N++SW +I A G +A+ LFE MQA G P+E+T TG+L+AC H+GLV
Sbjct: 312 FLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLV 371
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
D G YF + Y + I+HY CMVDL G+ G L EA E+I M ++P+V++WG+ L
Sbjct: 372 DMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGALLG 431
Query: 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVR 387
AC+ H ++ ++++KQ L + +P + GG++ LI ++Y ++WE +++RKLM+++ ++
Sbjct: 432 ACRIHGNVEIGKQILKQLLEL-EPHS-GGLYVLISNIYWEAQRWEDVKKIRKLMIDRGIK 489
Query: 388 KARGSSVI 395
K R S I
Sbjct: 490 KGRAISSI 497
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 145/337 (43%), Gaps = 52/337 (15%)
Query: 38 LHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDELPERNAVTWNTMIKGYSKS 94
LH+ I+ G + L+ V G +A+++FD++P+ N +N++I+GYS S
Sbjct: 7 LHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNS 66
Query: 95 GNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAV 154
+ +A F RM ++ + L A + E + GL ++ IG++
Sbjct: 67 DDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSA---YWEAVLVHGLAI-KLGIGSL 122
Query: 155 LSGCSHLGSVGLLMG--KSAHGFI--VKNEWELNEQIATILVDMYAKCGFLKYALMVFEL 210
+ + L +V ++ G A + ++ ++ + LVDMYAKCG L A +F+
Sbjct: 123 VFVQNALIAVYVVCGLIHCARKLFDDITDKTLIDIIVRNALVDMYAKCGNLHSAQAIFDR 182
Query: 211 MEERNVISWTALICGSAHRGYSE-------------------------------DALSLF 239
+E+NV+SWT++I A G E +AL LF
Sbjct: 183 TQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLF 242
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR----IQHYGCMVD 295
M+ + V P+E T +L AC G + G+K Y L + + Y ++D
Sbjct: 243 NKMRNSRVVPDEATLVSILAACSQLGDLVMGKKI-----HNYILSNKGAYGVTLYNSLID 297
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
++ K G + A ++ M N++ W + A H
Sbjct: 298 MYAKCGPVVTALDIFLEMP-GKNLVSWNVIIGALALH 333
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 125/319 (39%), Gaps = 82/319 (25%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF++M V D +++ IL +C+ +L + +H++IL V + SL+
Sbjct: 239 LDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDM 298
Query: 61 Y-----VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASW 115
Y VVT A +F E+P +N V+WN +I + G EA
Sbjct: 299 YAKCGPVVT----ALDIFLEMPGKNLVSWNVIIGALALHGCGLEA--------------- 339
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
+KLF EM +G PD++T+ +LS CSH G
Sbjct: 340 ----------------IKLFEEM-QADGTLPDEITLTGLLSACSHSG------------- 369
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
LVDM G + M R + + ++ G +A
Sbjct: 370 ---------------LVDM----GLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEA 410
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
+ L M +KP+ + + +L AC G V+ G++ K + E LEP H G +
Sbjct: 411 IELIGRMP---MKPDVVVWGALLGACRIHGNVEIGKQILKQLLE---LEP---HSGGLYV 461
Query: 296 LFGKAGFLEEAYEVIRTMR 314
L + + +E ++ +R
Sbjct: 462 LISNIYWEAQRWEDVKKIR 480
>gi|242047514|ref|XP_002461503.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
gi|241924880|gb|EER98024.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
Length = 786
Score = 271 bits (692), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 140/363 (38%), Positives = 214/363 (58%), Gaps = 7/363 (1%)
Query: 37 HLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELP-ERNAVTWNTMIKGYSKS 94
H+H+ +K G +YV +L+H Y V RK+FDELP R+ VTWN ++ GY ++
Sbjct: 151 HVHALAVKAGAAGDLYVRNALIHFYGVCGDVAAMRKVFDELPLVRDVVTWNAVLAGYVRA 210
Query: 95 GNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAV 154
G V AR+ F+ MP+R+ SWS ++ Y+ G + L +F+ M+ +G+ ++ I
Sbjct: 211 GMVGVAREVFDGMPMRDEVSWSTVVGGYVKEGELEVALGVFKNMVV-QGVKANEAAIVTA 269
Query: 155 LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER 214
LS + LG L GK H I + ++ + LVDMY+KCG + A VF+ M R
Sbjct: 270 LSAAAQLGL--LEQGKFVHEVIKRAGVAMSMNLGAALVDMYSKCGSVAAAKEVFDAMPWR 327
Query: 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF 274
+V +W ++ICG A G DA+ LFE + G P +TF GVL AC TGLVDEGR YF
Sbjct: 328 DVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTNITFVGVLNACSRTGLVDEGRWYF 387
Query: 275 KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
K++ E+Y +E ++HYGCMVDL +AG ++EA E+I M + P+ ++WG+ L+ACK H
Sbjct: 388 KLMAEKYGIESEMEHYGCMVDLLSRAGLVQEAIELIEGMHIPPDPVLWGTVLSACKRHGL 447
Query: 335 FDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSV 394
D+ V + + + P +D G + L+ +Y +KW+ +VRKLM N+ K+ G S+
Sbjct: 448 VDLGITVGNKLIEL-DPAHD-GYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKSAGWSL 505
Query: 395 ISS 397
+ +
Sbjct: 506 MEA 508
>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
Length = 855
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 137/394 (34%), Positives = 227/394 (57%), Gaps = 5/394 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF+QM + + D F++ ++ C + +L + LHS LK G + V+ SL+
Sbjct: 346 VELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISL 405
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A +F + ER+ V+W +MI YS+ GN+ +AR+FF+ M RN +W+AM+
Sbjct: 406 YAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAML 465
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
AY+ GA + GLK++ M+S + +TPD +T + GC+ +G+ L G G VK
Sbjct: 466 GAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKL--GDQIIGHTVKA 523
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
LN +A + MY+KCG + A +F+L+ ++V+SW A+I G + G + A F
Sbjct: 524 GLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTF 583
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+ M + G KP+ +++ VL+ C H+GLV EG+ YF M+ + + P ++H+ CMVDL G+
Sbjct: 584 DDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGR 643
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG L EA ++I M ++P +WG+ L+ACK H ++AE K + P D G +
Sbjct: 644 AGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSP--DSGSYM 701
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
L+ +Y+ K + + +VRKLM ++ ++K G S
Sbjct: 702 LLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYS 735
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 92/334 (27%), Positives = 158/334 (47%), Gaps = 12/334 (3%)
Query: 2 QLFSQMHRQSVPS------DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVAT 55
+LF +M R+ V S D+ SC + L K F V T
Sbjct: 108 ELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCRELAPQLLGLFWKFDFWGDPDVET 167
Query: 56 SLLHEYVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVAS 114
+L+ +V + FA +LF ++ N+M+ GY+K + A ++FE M R+V S
Sbjct: 168 ALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVS 227
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
W+ MIAA +G L L EM +G+ D T + L+ C+ L S+G GK H
Sbjct: 228 WNMMIAALSQSGRVREALGLVVEM-HRKGVRLDSTTYTSSLTACARLFSLGW--GKQLHA 284
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
++++ +++ +A+ L+++YAKCG K A VF +++RN +SWT LI GS
Sbjct: 285 KVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSK 344
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
++ LF M+A + ++ +++ C + + GR+ + + I ++
Sbjct: 345 SVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGH-NRAIVVSNSLI 403
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
L+ K G L+ A V +M E +++ W S + A
Sbjct: 404 SLYAKCGDLQNAEFVFSSMS-ERDIVSWTSMITA 436
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/357 (25%), Positives = 161/357 (45%), Gaps = 67/357 (18%)
Query: 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFD-ELPERN 80
L+SC L LH ++ +G S V++ +LLH Y+ + AR+L ++ E N
Sbjct: 27 LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPN 86
Query: 81 AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA-AYLNAGAYDPGLKLFREMI 139
+T N M+ GY+K G++ +A + F+RMP R+VASW+ +++ AG++
Sbjct: 87 VITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSW----------- 135
Query: 140 SNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG 199
M+ GA+ GC L L G K ++ + + T LVDM+ +CG
Sbjct: 136 ---------MSCGAL--GCRELAPQLL-------GLFWKFDFWGDPDVETALVDMFVRCG 177
Query: 200 FLKY-------------------------------ALMVFELMEERNVISWTALICGSAH 228
++ + A+ FE M ER+V+SW +I +
Sbjct: 178 YVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQ 237
Query: 229 RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRI 287
G +AL L M GV+ + T+T LTAC + G++ + K+I ++P +
Sbjct: 238 SGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYV 297
Query: 288 QHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
+++L+ K G +EA V +++ + N + W + +++ F + + Q
Sbjct: 298 A--SALIELYAKCGSFKEAKRVFNSLQ-DRNSVSWTVLIGGSLQYECFSKSVELFNQ 351
>gi|297734524|emb|CBI15771.3| unnamed protein product [Vitis vinifera]
Length = 436
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 149/393 (37%), Positives = 222/393 (56%), Gaps = 9/393 (2%)
Query: 7 MHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTS 65
M R D++S +LK+C + L +HS LKLG V+V +L+ + +
Sbjct: 1 MLRNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGA 60
Query: 66 FGFARKLFDELPE--RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL 123
AR +FD LP R+ V+WN+MI GY +S A F+R+P RN W++MIA Y
Sbjct: 61 VEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFDRIPHRNTVCWTSMIAGYA 120
Query: 124 NAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWEL 183
+ + ++LFREM G D TI VLS C H G+ L G+ H + +N E+
Sbjct: 121 QSDLFKEAIELFREM-QIGGFAADAATIACVLSACGHWGA--LAQGRWIHLYCERNSIEM 177
Query: 184 NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQ 243
+ L+ MY+KCG ++ AL +F + + ++ SW+A+I G A G S+ AL LF M+
Sbjct: 178 DLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQME 237
Query: 244 -ATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
+ ++PNE+TF GVL AC H G VD+G YF + + Y+L P I+HYGCMVDL G+A
Sbjct: 238 MISDIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANL 297
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362
L EA + IRT+ ++P+V+IW S L AC+ H ++AE KQ + ++P G L+
Sbjct: 298 LVEAEKFIRTLPIQPDVVIWRSLLFACRNHGNIELAEFAAKQ-IEELEPRR-CGARVLLS 355
Query: 363 DLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y +W +RVRK M Q ++K G S +
Sbjct: 356 NVYASASRWGDVKRVRKDMATQRIKKQPGCSFV 388
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 70/169 (41%), Gaps = 40/169 (23%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF +M +D+ +I +L +C H+ L G H+Y
Sbjct: 129 IELFREMQIGGFAADAATIACVLSACGHWGALAQ-----------GRWIHLYC------- 170
Query: 61 YVVTSFGFARKLFDELPERNAV-----TWNTMIKGYSKSGNVCEARDFFERMPLRNVASW 115
ERN++ N +I YSK G++ +A + F + ++ SW
Sbjct: 171 -----------------ERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSW 213
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV 164
SA+I+ G D L LF +M + P+++T VL C+H G V
Sbjct: 214 SAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGGFV 262
>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
Length = 865
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 137/394 (34%), Positives = 227/394 (57%), Gaps = 5/394 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF+QM + + D F++ ++ C + +L + LHS LK G + V+ SL+
Sbjct: 356 VELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISL 415
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A +F + ER+ V+W +MI YS+ GN+ +AR+FF+ M RN +W+AM+
Sbjct: 416 YAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAML 475
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
AY+ GA + GLK++ M+S + +TPD +T + GC+ +G+ L G G VK
Sbjct: 476 GAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKL--GDQIIGHTVKA 533
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
LN +A + MY+KCG + A +F+L+ ++V+SW A+I G + G + A F
Sbjct: 534 GLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTF 593
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+ M + G KP+ +++ VL+ C H+GLV EG+ YF M+ + + P ++H+ CMVDL G+
Sbjct: 594 DDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGR 653
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG L EA ++I M ++P +WG+ L+ACK H ++AE K + P D G +
Sbjct: 654 AGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSP--DSGSYM 711
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
L+ +Y+ K + + +VRKLM ++ ++K G S
Sbjct: 712 LLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYS 745
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 94/356 (26%), Positives = 166/356 (46%), Gaps = 39/356 (10%)
Query: 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFD-ELPERN 80
L+SC L LH ++ +G S V++ +LLH Y+ + AR+L ++ E N
Sbjct: 11 LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPN 70
Query: 81 AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMIS 140
+T N M+ GY+K G++ +A + F+RMP R+VASW+ +++ Y A + GL+ F M
Sbjct: 71 VITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHR 130
Query: 141 NEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGF 200
+ P+ T V+ C LG L G K ++ + + T LVDM+ +CG+
Sbjct: 131 SGDSLPNAFTFCCVMKSCGALGCREL--APQLLGLFWKFDFWGDPDVETALVDMFVRCGY 188
Query: 201 LKY-------------------------------ALMVFELMEERNVISWTALICGSAHR 229
+ + A+ FE M ER+V+SW +I +
Sbjct: 189 VDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQS 248
Query: 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQ 288
G +AL L M GV+ + T+T LTAC + G++ + K+I ++P +
Sbjct: 249 GRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVA 308
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
+++L+ K G +EA V +++ + N + W + +++ F + + Q
Sbjct: 309 --SALIELYAKCGSFKEAKRVFNSLQ-DRNSVSWTVLIGGSLQYECFSKSVELFNQ 361
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/331 (28%), Positives = 163/331 (49%), Gaps = 9/331 (2%)
Query: 1 MQLFSQMHR--QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL 58
++ F MHR S+P ++F+ ++KSC + L K F V T+L+
Sbjct: 122 LETFVSMHRSGDSLP-NAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALV 180
Query: 59 HEYVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
+V + FA +LF ++ N+M+ GY+K + A ++FE M R+V SW+
Sbjct: 181 DMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNM 240
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MIAA +G L L EM +G+ D T + L+ C+ L S+G GK H ++
Sbjct: 241 MIAALSQSGRVREALGLVVEM-HRKGVRLDSTTYTSSLTACARLFSLGW--GKQLHAKVI 297
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
++ +++ +A+ L+++YAKCG K A VF +++RN +SWT LI GS ++
Sbjct: 298 RSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVE 357
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LF M+A + ++ +++ C + + GR+ + + I ++ L+
Sbjct: 358 LFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGH-NRAIVVSNSLISLY 416
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
K G L+ A V +M E +++ W S + A
Sbjct: 417 AKCGDLQNAEFVFSSMS-ERDIVSWTSMITA 446
>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 684
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 138/387 (35%), Positives = 231/387 (59%), Gaps = 5/387 (1%)
Query: 10 QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE-YVVTSFGF 68
Q VP D ++ ++ SC+H +L +H ++K GF S++YV S+++ V
Sbjct: 173 QVVP-DEYTFTFVITSCSHQISLIYGEIVHGMVVKSGFESNLYVGNSVINMCSVFARMED 231
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
ARK+F+++ ER+ +W +++ GY+K G + A + F MP+RN SW+ MI+ +L G Y
Sbjct: 232 ARKVFNQMSERDVFSWTSLLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRY 291
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L F M+ ++ + P++ + VLS C+HLG+ L G H +I K + I+
Sbjct: 292 PEALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGA--LDQGNWIHLYIDKIGIRQSSNIS 349
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
T L+DMYAKCG + A VF + +R+V+S+T++I G ++ G +DAL +F M V
Sbjct: 350 TALIDMYAKCGRIDCASRVFNGICKRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVM 409
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
PNE+T GVL C H+GLV+EG ++ + + P+I+HYGC +DL G+AG+LE A E
Sbjct: 410 PNEITILGVLNGCSHSGLVEEGSSILANMESLWGIAPKIEHYGCYIDLLGRAGYLERALE 469
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
V++TM +EP+++IW + L+A + H ++ E++I ++ +++GG L+ +LY
Sbjct: 470 VVKTMPMEPDIVIWRALLSASRIHHNVNLGEQIISHIGQLKSSDHNGGE-VLLSNLYASL 528
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
+WE +RKLM+++ + G S I
Sbjct: 529 GRWERVTEMRKLMVDRRSESSPGCSWI 555
>gi|357127896|ref|XP_003565613.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Brachypodium distachyon]
Length = 500
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 133/364 (36%), Positives = 217/364 (59%), Gaps = 5/364 (1%)
Query: 33 TVIHHLHSHILKLGFISHVYVATSLLHEYVVTS-FGFARKLFDELPERNAVTWNTMIKGY 91
T+ LHS I++ G S +V+ SL+ Y AR +FD+ +++ WN MI GY
Sbjct: 86 TLGPQLHSVIVRAGLASDAHVSASLIQTYFSCGRVASARSVFDQTTDKDIFCWNVMISGY 145
Query: 92 SKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTI 151
KSGN+ AR+ F+ MP RNV SW+ +I AY +++FR M EG+ PD + +
Sbjct: 146 VKSGNLACARELFDVMPARNVVSWTTVIGAYAQMKQPVEAVEVFRRMQVEEGIEPDGVAL 205
Query: 152 GAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELM 211
+VLS C LG+V L G+ H F+V+ + ++DMY K G ++ A+ VFE M
Sbjct: 206 LSVLSACGDLGAVDL--GEWVHRFVVRRGLCWQIPLMNAIIDMYVKLGCVRKAVEVFEGM 263
Query: 212 EERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR 271
++++V++WT +I G A G +A+ +F M+ V PN++TF +L+AC H GL D GR
Sbjct: 264 DQKSVVTWTTVIAGFALHGLGLEAIEMFRRMEMENVAPNDVTFLAILSACSHVGLTDLGR 323
Query: 272 KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKE 331
YFK++ +Y ++ R++HYGCMVDL G+AG+L EA ++++ M + N IWG+ LAA +
Sbjct: 324 WYFKIMVSQYRIKQRVEHYGCMVDLLGRAGYLMEAQDLVQDMPFKANAAIWGALLAAART 383
Query: 332 HKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARG 391
H ++ ++ + + + +P N G + L+ ++Y E+W+ ++RK M ++ +R G
Sbjct: 384 HGDAELGKQALLHLIEL-EPHNSGN-YILLSNIYAEQERWDDVSKLRKQMKDRGLRNVPG 441
Query: 392 SSVI 395
+S I
Sbjct: 442 ASSI 445
>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 270 bits (691), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 144/401 (35%), Positives = 235/401 (58%), Gaps = 24/401 (5%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILK------SCTHFNNLTVIHHLHSHILKLGFISHVYVA 54
M+LF M + V S + I +LK +C F+ + + + + + G YV
Sbjct: 1 MRLFKVMDERDVVSWNSMIRGLLKVGELSEACKLFDEMPMKDAVSWNTILDG-----YVK 55
Query: 55 TSLLHEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVAS 114
+++ +FG LF+ +PERN V+W+TM+ GY K+G++ AR F+RMP++N+ S
Sbjct: 56 AGEMNK----AFG----LFESMPERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVS 107
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
W+ +++ Y G ++ F +M GL PD T+ ++L+ C+ G +GL GK H
Sbjct: 108 WTIIVSGYAVKGLAKDAIRSFEQM-EEAGLKPDDGTVISILASCAESGLLGL--GKRVHT 164
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
I + ++ + ++ LVDMYAKCG + AL VF M +++++SW ++ G A G+ E
Sbjct: 165 SIERIRYKCSVNVSNALVDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEK 224
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
AL LF +M+ G +P+++T VL ACVH G VDEG +YF ++ +Y + P I+HYGCMV
Sbjct: 225 ALQLFSIMRQEGFRPDKVTLVAVLCACVHAGFVDEGIRYFNNMERDYGIVPHIEHYGCMV 284
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
DL G+ G L+EAY ++++M +EPNV+IWG+ L AC+ H +AE V+ L ++P +D
Sbjct: 285 DLLGRGGRLKEAYRLVQSMPVEPNVVIWGTLLGACRMHNAVGLAEEVL-DCLFKLEP-SD 342
Query: 355 GGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G ++L+ +++ W VR M N ++K G+S I
Sbjct: 343 PGNYSLLSNIFASAGDWSSVANVRLQMKNFGIQKPSGASSI 383
>gi|326507244|dbj|BAJ95699.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 524
Score = 270 bits (691), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 150/406 (36%), Positives = 231/406 (56%), Gaps = 19/406 (4%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+L S + R P D S L +L + L+ H L +L+LGF+SH ++ +LL Y
Sbjct: 119 RLLSSLRRLHAP-DRLSFLPLLGPTSSLPLLSAFHGL---LLRLGFLSHHAISLALLRPY 174
Query: 62 VVTSFGFARKLFDELPERNAVT--WNTMIKGYSKSGNVCEARDFFERM-----PLRNVAS 114
+ R LFDE+P++ T +NT+I Y K+ ++ AR F+ M R++ S
Sbjct: 175 RLP---HVRILFDEMPQQRKCTIAYNTLITAYVKAKDIFTARHLFDEMQRFKRSRRSMVS 231
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
W+AMI+ G D ++ F++M+ + PD T+ AVL C +G+ G G+ AH
Sbjct: 232 WNAMISGCTWCGRDDMAVRYFQDMVREGKVAPDDGTLAAVLPACGRIGNAG--AGRWAHE 289
Query: 175 FIVKNE-WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE 233
+ K +++ +A +VDMY KCG + A VFE M++R+V+SW +I G + G
Sbjct: 290 YACKKGILDISVHVANAVVDMYCKCGVVNSAREVFEGMQQRSVVSWNTMISGFSLNGQGI 349
Query: 234 DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293
+ LF M +G +PN +TF GVL C H G VD G+ F+ + E+ +E I+HYGCM
Sbjct: 350 KGIELFRQMVRSGGEPNSVTFLGVLGCCAHAGAVDTGQLIFQTMQSEHGIEAGIEHYGCM 409
Query: 294 VDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353
VDL G++G LEEA+ +I+ MR+ PN IWGS L+AC+ H +AE +K+ + + +P N
Sbjct: 410 VDLLGRSGLLEEAHALIQGMRMSPNSAIWGSLLSACRAHAGLGIAEVALKELISL-EPWN 468
Query: 354 DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLS 399
G + L+ +LY ++W+ A VRKLM +V+KA G S+I S
Sbjct: 469 SGN-YMLLANLYAETQRWDEAGDVRKLMRRMSVQKAPGQSLIEEPS 513
>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 1024
Score = 270 bits (691), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 143/397 (36%), Positives = 222/397 (55%), Gaps = 7/397 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
M++F M V + +++ ++ +C+ NL + +H + + + + +LL
Sbjct: 343 MEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDM 402
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
YV AR+LFD + ++ +W +M+ GY+K G++ AR FF++ P +N WSAMI
Sbjct: 403 YVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMI 462
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG-FIVK 178
A Y LKLF EM+ G+ P + T+ +VLS C L + L G H F+V
Sbjct: 463 AGYSQNNKPKESLKLFHEMME-RGVVPIEHTLVSVLSACGQLTCLNL--GDWIHQYFVVG 519
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
L+ + +VDMYAKCG + A VF M ERN+ISW +I G A G ++ A+++
Sbjct: 520 KIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINV 579
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F+ M+ G +PN +TF +LTAC H GL+ EGR+YF ++ +Y ++P HY CMVDL G
Sbjct: 580 FDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMERKYGIKPERGHYACMVDLLG 639
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+ G LEEAY++I M ++P WG+ L AC+ H ++A LR+ PE D G++
Sbjct: 640 RTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHGNVELARLSAHNLLRL-DPE-DSGIY 697
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ + + KW RVR LM ++ V+K G S+I
Sbjct: 698 VLLANTCANDRKWSDVRRVRSLMKDKGVKKIPGYSLI 734
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 113/390 (28%), Positives = 168/390 (43%), Gaps = 80/390 (20%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
F M + V DS S + LK+C F + ++ + K+GF + V L+H Y
Sbjct: 244 FFVYMFQLRVEMDSRSFVFALKACQQFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYA 303
Query: 63 VTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
AR++FDE +++ VTW TMI GY+ EA + FE M L +V
Sbjct: 304 ERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVE-------- 355
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
P+++T+ AV+S CS +G+ L MGK H + +
Sbjct: 356 ------------------------PNEVTLIAVVSACSDMGN--LEMGKRVHEKVEEKNM 389
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALI-----CG---SAHR---- 229
+ + L+DMY KC L A +F+ M ++V SWT+++ CG SA R
Sbjct: 390 RCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQ 449
Query: 230 --------------GYSED-----ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
GYS++ +L LF M GV P E T VL+AC ++ G
Sbjct: 450 TPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLG 509
Query: 271 ---RKYF---KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324
+YF K+I LE I VD++ K G ++ A EV TM E N+I W +
Sbjct: 510 DWIHQYFVVGKIIPLSVTLENAI------VDMYAKCGSIDAATEVFSTMP-ERNLISWNT 562
Query: 325 FLAACKEHKQFDMAERVIKQALRM-VKPEN 353
+A + + A V Q M +P N
Sbjct: 563 MIAGYAANGRAKQAINVFDQMRNMGFEPNN 592
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 85/370 (22%), Positives = 162/370 (43%), Gaps = 47/370 (12%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDEL 76
L I++SC+ L I + + G I+H + + ++ + G +A +F+ +
Sbjct: 161 LLIMESCSTMRQLKQIQ---ARMTLTGIITHAFPVSRVIAFCALAHSGDLHYAHTIFNRV 217
Query: 77 PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFR 136
+ N WNTMI+GY + A FF M +L
Sbjct: 218 EQPNTFMWNTMIRGYQNARKPIFAFSFFVYM------------------------FQLRV 253
Query: 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA 196
EM D + L C +V G+S + + K ++ + L+ YA
Sbjct: 254 EM--------DSRSFVFALKACQQFETV--FEGESVYCVVWKMGFDCELLVRNGLIHFYA 303
Query: 197 KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTG 256
+ G LK A VF+ +++V++WT +I G A SE+A+ +FE+M + V+PNE+T
Sbjct: 304 ERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIA 363
Query: 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE 316
V++AC G ++ G++ + + EE ++ + + ++D++ K L +A E+ M +
Sbjct: 364 VVSACSDMGNLEMGKRVHEKV-EEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATK 422
Query: 317 PNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAER 376
+V W S + + + A R Q P + ++ + Y+ N K + + +
Sbjct: 423 -DVYSWTSMVNGYAKCGDLESARRFFDQT-----PRKNAVCWSAMIAGYSQNNKPKESLK 476
Query: 377 VRKLMLNQNV 386
+ M+ + V
Sbjct: 477 LFHEMMERGV 486
>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
Length = 865
Score = 270 bits (691), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 137/394 (34%), Positives = 227/394 (57%), Gaps = 5/394 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF+QM + + D F++ ++ C + +L + LHS LK G + V+ SL+
Sbjct: 356 VELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISL 415
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A +F + ER+ V+W +MI YS+ GN+ +AR+FF+ M RN +W+AM+
Sbjct: 416 YAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAML 475
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
AY+ GA + GLK++ M+S + +TPD +T + GC+ +G+ L G G VK
Sbjct: 476 GAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKL--GDQIIGHTVKA 533
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
LN +A + MY+KCG + A +F+L+ ++V+SW A+I G + G + A F
Sbjct: 534 GLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTF 593
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+ M + G KP+ +++ VL+ C H+GLV EG+ YF M+ + + P ++H+ CMVDL G+
Sbjct: 594 DDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGR 653
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG L EA ++I M ++P +WG+ L+ACK H ++AE K + P D G +
Sbjct: 654 AGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSP--DSGSYM 711
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
L+ +Y+ K + + +VRKLM ++ ++K G S
Sbjct: 712 LLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYS 745
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 94/356 (26%), Positives = 165/356 (46%), Gaps = 39/356 (10%)
Query: 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFD-ELPERN 80
L+SC L LH ++ +G S V++ +LLH Y + AR+L ++ E N
Sbjct: 11 LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIKEPN 70
Query: 81 AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMIS 140
+T N M+ GY+K G++ +A + F+RMP R+VASW+ +++ Y A + GL+ F M
Sbjct: 71 VITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHR 130
Query: 141 NEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGF 200
+ P+ T V+ C LG L G K ++ + + T LVDM+ +CG+
Sbjct: 131 SGDSLPNAFTFCCVMKSCGALGCREL--APQLLGLFWKFDFWGDPDVETALVDMFVRCGY 188
Query: 201 LKY-------------------------------ALMVFELMEERNVISWTALICGSAHR 229
+ + A+ FE M ER+V+SW +I +
Sbjct: 189 VDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQS 248
Query: 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQ 288
G +AL L M GV+ + T+T LTAC + G++ + K+I ++P +
Sbjct: 249 GRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVA 308
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
+++L+ K G +EA V +++ + N + W + +++ F + + Q
Sbjct: 309 --SALIELYAKCGSFKEAKRVFNSLQ-DRNSVSWTVLIGGSLQYECFSKSVELFNQ 361
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/331 (28%), Positives = 163/331 (49%), Gaps = 9/331 (2%)
Query: 1 MQLFSQMHR--QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL 58
++ F MHR S+P ++F+ ++KSC + L K F V T+L+
Sbjct: 122 LETFVSMHRSGDSLP-NAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALV 180
Query: 59 HEYVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
+V + FA +LF ++ N+M+ GY+K + A ++FE M R+V SW+
Sbjct: 181 DMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNM 240
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MIAA +G L L EM +G+ D T + L+ C+ L S+G GK H ++
Sbjct: 241 MIAALSQSGRVREALGLVVEM-HRKGVRLDSTTYTSSLTACARLFSLGW--GKQLHAKVI 297
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
++ +++ +A+ L+++YAKCG K A VF +++RN +SWT LI GS ++
Sbjct: 298 RSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVE 357
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LF M+A + ++ +++ C + + GR+ + + I ++ L+
Sbjct: 358 LFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGH-NRAIVVSNSLISLY 416
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
K G L+ A V +M E +++ W S + A
Sbjct: 417 AKCGDLQNAEFVFSSMS-ERDIVSWTSMITA 446
>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Vitis vinifera]
Length = 590
Score = 270 bits (691), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 128/315 (40%), Positives = 200/315 (63%), Gaps = 6/315 (1%)
Query: 82 VTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISN 141
V N ++ Y K +CEAR F+ +P R++ SW+++I+ + L+LF +M
Sbjct: 239 VVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDM-QI 297
Query: 142 EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFL 201
G+ PD++ + +VLS C+ LG+ L G+ +I + E + I T LVDMYAKCG +
Sbjct: 298 SGVEPDRIILTSVLSACASLGA--LDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCI 355
Query: 202 KYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261
+ AL +F + RN+ +W AL+ G A G+ +AL FE+M G++PNE+TF +LTAC
Sbjct: 356 EMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTAC 415
Query: 262 VHTGLVDEGRKYF-KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVI 320
H+GLV EGR YF +MI + ++ PR++HYGCM+DL +AG L+EAY+ IR M L P+V+
Sbjct: 416 CHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVL 475
Query: 321 IWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKL 380
IWG+ L+ACK + ++++ ++ L + D GV+ L+ ++Y NE+W+ RVR+L
Sbjct: 476 IWGALLSACKANGNVELSQEILSHLLEL--KSQDSGVYVLLSNIYATNERWDDVTRVRRL 533
Query: 381 MLNQNVRKARGSSVI 395
M ++ +RK GSSVI
Sbjct: 534 MKDKGIRKFPGSSVI 548
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 97/322 (30%), Positives = 156/322 (48%), Gaps = 41/322 (12%)
Query: 12 VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFAR 70
VP D ++ +LK+CT F + +H +K+GF+ +YV SLLH Y V +G A
Sbjct: 102 VP-DMYTFPVVLKACTKFLGVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAG 160
Query: 71 KLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDP 130
++FDE M +R+V SW+ +I+ Y+ G +D
Sbjct: 161 RVFDE-------------------------------MLVRDVVSWTGLISGYVRTGLFDE 189
Query: 131 GLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATI 190
+ LF +M + P+ T +VL C +G L MGK HG + K + + +
Sbjct: 190 AINLFLKM----DVVPNVATFVSVLVACGRMGY--LSMGKGVHGLVYKRAFGIGLVVGNA 243
Query: 191 LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250
LVDMY KC L A +F+ + +R+++SWT++I G +D+L LF MQ +GV+P+
Sbjct: 244 LVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPD 303
Query: 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI 310
+ T VL+AC G +D GR + I+ + +E I +VD++ K G +E A +
Sbjct: 304 RIILTSVLSACASLGALDYGRWVQEYIERQ-GIEWDIHIGTALVDMYAKCGCIEMALHIF 362
Query: 311 RTMRLEPNVIIWGSFLAACKEH 332
+ N+ W + L H
Sbjct: 363 NGIP-NRNIFTWNALLGGLAMH 383
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 145/344 (42%), Gaps = 51/344 (14%)
Query: 17 FSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDEL 76
F L +L S + + +H+H++ G + +V S + E+ GF FD L
Sbjct: 3 FLKLRLLNSIHRCKTIRSLKQIHAHLIASGLLHDEFV-LSKVSEFFGKHIGFVDYAFDFL 61
Query: 77 PERN----AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGL 132
+ + + +NT+I Y+ S C + AA+L G
Sbjct: 62 NQTDLHVGTLPYNTLIAAYASS---CTPK------------------AAFLVYGR----- 95
Query: 133 KLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILV 192
I G PD T VL C+ +G+ G+ HG VK + + + L+
Sbjct: 96 ------IVGNGFVPDMYTFPVVLKACTKF--LGVQEGEQVHGVAVKMGFLCDLYVQNSLL 147
Query: 193 DMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEM 252
Y+ CG A VF+ M R+V+SWT LI G G ++A++LF M V PN
Sbjct: 148 HFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLKMD---VVPNVA 204
Query: 253 TFTGVLTACVHTGLVDEGRKYFKMI-DEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR 311
TF VL AC G + G+ ++ + + + + +VD++ K L EA ++
Sbjct: 205 TFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGN--ALVDMYVKCECLCEARKLFD 262
Query: 312 TMRLEPNVIIWGSFLAA---CKEHKQFDMAERVIKQALRMVKPE 352
+ + +++ W S ++ CK+ K D E + V+P+
Sbjct: 263 ELP-DRDIVSWTSIISGLVQCKQPK--DSLELFYDMQISGVEPD 303
>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Vitis vinifera]
Length = 677
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 145/428 (33%), Positives = 239/428 (55%), Gaps = 41/428 (9%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV- 62
F M R S+ D ++ +LKS ++ + LH ++KLG +V SL+ YV
Sbjct: 126 FVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVK 185
Query: 63 VTSFGFARKLFDE-----------------------------------LPERNAVTWNTM 87
+ GF +LFDE +PERNA +WN++
Sbjct: 186 IGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSL 245
Query: 88 IKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD 147
I G+ ++G++ AR+ F +MP +NV SW+ MI + G ++ L +F M+ EG+ P+
Sbjct: 246 INGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLE-EGVRPN 304
Query: 148 QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMV 207
+T+ + L C+ +G+ L +G+ H ++ N ++LN I T LVDMYAKCG +K A V
Sbjct: 305 DLTVVSALLACTKIGA--LQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRV 362
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
F + +++++W+ +I G A G + AL F M++ G+ P+E+ F +LTAC H+G V
Sbjct: 363 FVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNV 422
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
D+G +F+ + +Y +EP ++HY +VDL G+AG L+EA I++M + P+ +IWG+
Sbjct: 423 DQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFC 482
Query: 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVR 387
AC+ HK +MAE ++ L++ +P++ G + + ++Y +WE ERVR LM N+ V
Sbjct: 483 ACRAHKNIEMAELTAEKLLQL-EPKHPGS-YVFLSNVYAAVGRWEDVERVRTLMKNRGVE 540
Query: 388 KARGSSVI 395
K G S I
Sbjct: 541 KDPGWSYI 548
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 91/366 (24%), Positives = 148/366 (40%), Gaps = 59/366 (16%)
Query: 27 THF-------NNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFDELPE 78
THF N L +H +H+ I S+ V T L+ + S +A +F
Sbjct: 41 THFIPLIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDH 100
Query: 79 RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM 138
N +N +I+G +++ + F M L+L
Sbjct: 101 PNLFVFNALIRGLAENSRFEGSVSHFVLM------------------------LRL---- 132
Query: 139 ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198
+ PD++T+ VL + L VGL G+ HG ++K E + + LVDMY K
Sbjct: 133 ----SIRPDRLTLPFVLKSVAALVDVGL--GRCLHGGVMKLGLEFDSFVRVSLVDMYVKI 186
Query: 199 GFLKYALMVFELMEERN----VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTF 254
G L + L +F+ +RN ++ W LI G G A SLFE M + N ++
Sbjct: 187 GELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAMP----ERNAGSW 242
Query: 255 TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR 314
++ V G +D R+ F + E+ + + M++ F + G E+A + M
Sbjct: 243 NSLINGFVRNGDLDRARELFVQMPEK-----NVVSWTTMINGFSQNGDHEKALSMFWRML 297
Query: 315 LE---PNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKW 371
E PN + S L AC + + ER I L + + G+ T + D+Y
Sbjct: 298 EEGVRPNDLTVVSALLACTKIGALQVGER-IHNYLSSNGFQLNRGIGTALVDMYAKCGNI 356
Query: 372 EGAERV 377
+ A RV
Sbjct: 357 KSASRV 362
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 113/267 (42%), Gaps = 40/267 (14%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F +M + V + +++ L +CT L V +H+++ GF + + T+L+
Sbjct: 290 LSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDM 349
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + A ++F E ++ +TW+ MI G++
Sbjct: 350 YAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIH------------------------- 384
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV--GLLMGKSAHGFIV 177
G +D L+ F +M S G+ PD++ A+L+ CSH G+V GL +S +
Sbjct: 385 ------GCFDQALQCFVKMKS-AGINPDEVIFLAILTACSHSGNVDQGLNFFESMR---L 434
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALICG-SAHRGYSEDA 235
E + T++VD+ + G L AL + M + + W AL C AH+
Sbjct: 435 DYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAE 494
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACV 262
L+ +++Q P F + A V
Sbjct: 495 LTAEKLLQLEPKHPGSYVFLSNVYAAV 521
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 88/217 (40%), Gaps = 31/217 (14%)
Query: 184 NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQ 243
N ++ T L+ L YAL +F + N+ + ALI G A E ++S F +M
Sbjct: 71 NSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLML 130
Query: 244 ATGVKPNEMTFTGVLTA-----------CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC 292
++P+ +T VL + C+H G++ G E+D R+
Sbjct: 131 RLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGL--------EFDSFVRVS---- 178
Query: 293 MVDLF---GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349
+VD++ G+ GF + ++ ++++W + C + A + +
Sbjct: 179 LVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFE-----A 233
Query: 350 KPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386
PE + G + + + + N + A + M +NV
Sbjct: 234 MPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNV 270
>gi|334182333|ref|NP_172105.4| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
gi|8810477|gb|AAF80138.1|AC024174_20 Contains similarity to an unknown protein T5J8.5 gi|4263522 from
Arabidopsis thaliana BAC T5J8 gb|AC004044 and contains
multiple PPR PF|01535 repeats. ESTs gb|AV565358,
gb|AV558710, gb|AV524184 come from this gene [Arabidopsis
thaliana]
gi|332189826|gb|AEE27947.1| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
Length = 1322
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 149/428 (34%), Positives = 234/428 (54%), Gaps = 40/428 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L+ +M R SV S++ ++K+ + + L +HI K GF HV + T+L+
Sbjct: 856 LELYVRMLRDSVSPSSYTYSSLVKASSFASRFG--ESLQAHIWKFGFGFHVKIQTTLIDF 913
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTM-------------------------------I 88
Y T ARK+FDE+PER+ + W TM I
Sbjct: 914 YSATGRIREARKVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLI 973
Query: 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ 148
GY GN+ +A F +MP++++ SW+ MI Y Y + +F +M+ EG+ PD+
Sbjct: 974 NGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMM-EEGIIPDE 1032
Query: 149 MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVF 208
+T+ V+S C+HLG L +GK H + ++N + L+ I + LVDMY+KCG L+ AL+VF
Sbjct: 1033 VTMSTVISACAHLGV--LEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVF 1090
Query: 209 ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
+ ++N+ W ++I G A G++++AL +F M+ VKPN +TF V TAC H GLVD
Sbjct: 1091 FNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVD 1150
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
EGR+ ++ + ++Y + ++HYG MV LF KAG + EA E+I M EPN +IWG+ L
Sbjct: 1151 EGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLDG 1210
Query: 329 CKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRK 388
C+ HK +AE + L +++P N G F L+ +Y +W +R M + K
Sbjct: 1211 CRIHKNLVIAEIAFNK-LMVLEPMNSGYYFLLV-SMYAEQNRWRDVAEIRGRMRELGIEK 1268
Query: 389 -ARGSSVI 395
G+S I
Sbjct: 1269 ICPGTSSI 1276
>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 640
Score = 270 bits (690), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 151/429 (35%), Positives = 234/429 (54%), Gaps = 39/429 (9%)
Query: 1 MQLFSQMHRQ-SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+ F Q+ RQ ++ DSF+ LK+ + +L LHS + GF +H++V T+L+
Sbjct: 87 LHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGIQLHSQAFRHGFDAHIFVGTTLIS 146
Query: 60 EYV-VTSFGFARKLFDELPERNAVTWNT-------------------------------M 87
Y G AR++FDE+ E N VTWN M
Sbjct: 147 MYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDVEGAQDVFGCMPVRNLTSWNGM 206
Query: 88 IKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD 147
+ GY+K+G + AR F MPLR+ SWS MI + + G +D FRE++ E + +
Sbjct: 207 LAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELLREE-IRTN 265
Query: 148 QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMV 207
++++ VLS C+ G+ GK HGF+ K + + L+D Y+KCG + A +V
Sbjct: 266 EVSLTGVLSACAQAGA--FEFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLV 323
Query: 208 FELME-ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
F+ M R+++SWT++I G A G E+A+ LF M+ +GV+P+ +TF +L AC H+GL
Sbjct: 324 FQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFISLLYACSHSGL 383
Query: 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
V+EG F + Y +EP I+HYGCMVDL+G+A L++AYE I M + PN IIW + L
Sbjct: 384 VEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICEMPVSPNAIIWRTLL 443
Query: 327 AACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386
AC H +MAE ++K L + P+N G L+ ++Y + KW+ +R+ M ++
Sbjct: 444 GACSIHGNIEMAE-LVKARLAEMDPDNSGD-HVLLSNVYAVAGKWKDVSSIRRTMTEHSM 501
Query: 387 RKARGSSVI 395
+K G S+I
Sbjct: 502 KKTPGWSMI 510
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 87/350 (24%), Positives = 144/350 (41%), Gaps = 50/350 (14%)
Query: 22 ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT---SFGFARKLFDELPE 78
+L C+ +L +H+ I K G + V LL +T + +A +LF P
Sbjct: 8 LLSKCS---SLKPTKQIHAQICKTGLHTDPLVFGKLLLHCAITISDALHYALRLFHHFPN 64
Query: 79 RNAVTWNTMIKGYSKSGNVCEARDFF---ERMPLRNVASWSAMIA--AYLNAGAYDPGLK 133
+ NT+I+ S S + F R P + S++ A A N+ PG++
Sbjct: 65 PDTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGIQ 124
Query: 134 L----FRE-----------MIS---------------NEGLTPDQMTIGAVLSGCSHLGS 163
L FR +IS +E P+ +T AVL+ G
Sbjct: 125 LHSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCGD 184
Query: 164 VGLLMGKSAHGFI-VKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTAL 222
V + G + V+N N +A YAK G L A VF M R+ +SW+ +
Sbjct: 185 VE--GAQDVFGCMPVRNLTSWNGMLAG-----YAKAGELGLARRVFYEMPLRDEVSWSTM 237
Query: 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD 282
I G AH G ++A F + ++ NE++ TGVL+AC G + G+ +++
Sbjct: 238 IVGFAHNGCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGF 297
Query: 283 LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
L + ++D + K G + A V + M + +++ W S +A H
Sbjct: 298 LYVGSVN-NALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMH 346
>gi|242037745|ref|XP_002466267.1| hypothetical protein SORBIDRAFT_01g004770 [Sorghum bicolor]
gi|241920121|gb|EER93265.1| hypothetical protein SORBIDRAFT_01g004770 [Sorghum bicolor]
Length = 537
Score = 270 bits (690), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 141/364 (38%), Positives = 215/364 (59%), Gaps = 13/364 (3%)
Query: 38 LHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDELPERNAVTWNTMIKGYSKS 94
+H+ I+ G + V+V+T L+ Y +G +R+LFD +P ++ V+WN M+ Y +
Sbjct: 145 VHALIVTSGIVPDVFVSTELIRLY--GEYGELLVSRRLFDAMPVKSTVSWNAMVHQYIRH 202
Query: 95 GNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEG--LTPDQMTIG 152
NV +A + F MP R+V SW+ +IA Y G + L+LFR+M+S + P+ TI
Sbjct: 203 SNVGDAYELFLAMPKRDVVSWNTIIAGYCLIGRFMEALELFRQMMSPSSCPVHPNGPTIS 262
Query: 153 AVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME 212
VL+ C+ G L G H +I +N + + L+DMYAKCG ++ AL VFE
Sbjct: 263 TVLAACAGAGC--LETGIWVHAYIDRNRMNDDGSLDRSLIDMYAKCGSIEKALQVFEKAP 320
Query: 213 -ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR 271
+R++ SWT +ICG A G + DAL +F MMQ G++P+++T GVL AC H GLVDEG
Sbjct: 321 GKRDLYSWTTVICGLAMHGKAADALRMFGMMQDNGIRPDDVTLVGVLNACAHGGLVDEGL 380
Query: 272 KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKE 331
+F + E+Y + P+I+HYGC++DL G+ G L+EAY +IRTMR++PN +IWG+FL ACK
Sbjct: 381 HHFYSL-EKYAITPKIEHYGCVIDLLGRVGRLQEAYSIIRTMRMKPNAVIWGAFLNACKV 439
Query: 332 HKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARG 391
H ++ E + R+ +D ++ LY + W R R+ M + ++K G
Sbjct: 440 HSNVELGEIAAAELTRL--DPDDPWAKVMLSSLYAKAQDWSSLARERREMNSLQMKKTPG 497
Query: 392 SSVI 395
S I
Sbjct: 498 CSSI 501
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 84/343 (24%), Positives = 135/343 (39%), Gaps = 42/343 (12%)
Query: 38 LHSHILKLGFI-SHVYVATSLLHEYVVTSFG-FARKLFDELPERNAVTWNTMIKGYSKSG 95
+H + K G + + ++ T+LL Y AR LFDE+P+ VT M + ++ SG
Sbjct: 33 IHGLLFKEGLLHAGSHLPTALLSAYAALGRPRHARDLFDEMPDPGLVTRTAMARAHAASG 92
Query: 96 NVCEARDFFERMPLRNVAS--------------WSAMIAAYLNAGAYDPGLKLFREMISN 141
+A F M V + AA A A PG K+ +I
Sbjct: 93 QTAQALAVFGDMLADGVLPDNVALAVALAACHGTGSFPAALGMAAARRPG-KMVHALIVT 151
Query: 142 EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFL 201
G+ PD ++ G + L+ + VK+ N +V Y + +
Sbjct: 152 SGIVPDVFVSTELIRLYGEYGEL-LVSRRLFDAMPVKSTVSWNA-----MVHQYIRHSNV 205
Query: 202 KYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG---VKPNEMTFTGVL 258
A +F M +R+V+SW +I G G +AL LF M + V PN T + VL
Sbjct: 206 GDAYELFLAMPKRDVVSWNTIIAGYCLIGRFMEALELFRQMMSPSSCPVHPNGPTISTVL 265
Query: 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG----CMVDLFGKAGFLEEAYEVIRTMR 314
AC G ++ G ID R+ G ++D++ K G +E+A +V
Sbjct: 266 AACAGAGCLETGIWVHAYIDRN-----RMNDDGSLDRSLIDMYAKCGSIEKALQVFEKAP 320
Query: 315 LEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
+ ++ W + + H + ALRM D G+
Sbjct: 321 GKRDLYSWTTVICGLAMHGK-------AADALRMFGMMQDNGI 356
Score = 41.2 bits (95), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 162 GSVGLLMGKSAHGFIVKNEW-ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWT 220
G L + HG + K + T L+ YA G ++A +F+ M + +++ T
Sbjct: 23 GPRAHLAAAAIHGLLFKEGLLHAGSHLPTALLSAYAALGRPRHARDLFDEMPDPGLVTRT 82
Query: 221 ALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG 265
A+ A G + AL++F M A GV P+ + L AC TG
Sbjct: 83 AMARAHAASGQTAQALAVFGDMLADGVLPDNVALAVALAACHGTG 127
>gi|357140545|ref|XP_003571826.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Brachypodium distachyon]
Length = 489
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 143/366 (39%), Positives = 226/366 (61%), Gaps = 12/366 (3%)
Query: 38 LHSHILKLGFIS-HVYVATSLLHEYVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSG 95
LHSH L+LG + +++A S +H Y + AR+LFDE+P N V+WN ++ GY+K
Sbjct: 82 LHSHPLRLGLLPCDLHIANSFVHMYAACALPDLARRLFDEIPRPNPVSWNALLDGYAKCR 141
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM---ISNEGLTPDQMTIG 152
++ AR+ F+RMP R+V SWSAMI + G Y L LF M + G+ + +T+
Sbjct: 142 DLSAAREVFDRMPHRDVVSWSAMIDGCVKCGEYREALALFEMMEAAATGHGVRANDVTMI 201
Query: 153 AVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME 212
++L C+HLG L G+ H ++ + + LN ++AT LVDMYAKCG + AL VF +
Sbjct: 202 SMLGACAHLGD--LRRGRQMHRYLQERGFLLNLRLATSLVDMYAKCGAISEALEVFRAVP 259
Query: 213 --ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
+V+ W A+I G A G + + LF+ MQ +GV P+E+T+ G+L+ACVH GLVDE
Sbjct: 260 VASTDVLMWNAMIGGLAVHGMGMETVELFQEMQHSGVVPDEITYLGLLSACVHGGLVDEA 319
Query: 271 RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330
++F + E L P ++HY C+VD+ +AG LEEAY V+++M +EP+V + G+ L AC
Sbjct: 320 WRFFCSL-EAQGLRPHVEHYACLVDVLSRAGRLEEAYGVVKSMPMEPSVSVLGAILNACH 378
Query: 331 EHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKAR 390
H ++ E V +Q +R+ +P++DG L ++Y + ++W+ A++ RK+M + ++K
Sbjct: 379 LHGWVELGEVVGRQLVRL-QPDHDGRYIGL-SNIYAVAKRWQEAKKARKVMSERGLKKIP 436
Query: 391 GSSVIS 396
G S I
Sbjct: 437 GFSEID 442
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 95/223 (42%), Gaps = 39/223 (17%)
Query: 10 QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFA 69
V ++ +++ +L +C H +L +H ++ + GF+ ++ +ATSL
Sbjct: 191 HGVRANDVTMISMLGACAHLGDLRRGRQMHRYLQERGFLLNLRLATSL------------ 238
Query: 70 RKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL--RNVASWSAMIAAYLNAGA 127
+ Y+K G + EA + F +P+ +V W+AMI G
Sbjct: 239 ------------------VDMYAKCGAISEALEVFRAVPVASTDVLMWNAMIGGLAVHGM 280
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
++LF+EM + G+ PD++T +LS C H G L+ ++ F L +
Sbjct: 281 GMETVELFQEM-QHSGVVPDEITYLGLLSACVH----GGLVDEAWRFFCSLEAQGLRPHV 335
Query: 188 A--TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAH 228
LVD+ ++ G L+ A V + M +S I + H
Sbjct: 336 EHYACLVDVLSRAGRLEEAYGVVKSMPMEPSVSVLGAILNACH 378
>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 150/396 (37%), Positives = 232/396 (58%), Gaps = 7/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+QL+S+M +S+ D++ + ILK+C L +HS LKLGF S+ V ++
Sbjct: 132 IQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMEL 191
Query: 61 Y-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y G AR++F+E+PE + V MI YS G V EA F R+ ++ W+AMI
Sbjct: 192 YGKCGELGDARRVFEEMPE-DVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMI 250
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
++ + L+ FR M E + P++ TI VLS CS LG+ L +G+ H ++ K
Sbjct: 251 DGFVRNEETNRALEAFRGM-QGENVRPNEFTIVCVLSACSQLGA--LEIGRWVHSYMRKF 307
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
E ELN + L++MY++CG + A VF+ M++R+VI++ +I G + G S A+ LF
Sbjct: 308 EIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELF 367
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+M ++P +TF GVL AC H GLVD G + F + +Y +EP+I+HYGCMVDL G+
Sbjct: 368 RVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGR 427
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
G LEEAY++IRTM++ P+ I+ G+ L+ACK HK ++ E+V K+ + + D G +
Sbjct: 428 VGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELED--RGQADSGTYV 485
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ +Y + KW+ A +VR M ++K G S I
Sbjct: 486 LLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSI 521
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 98/241 (40%), Gaps = 13/241 (5%)
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
DQ I ++L H+ V + H +++N + + L+ +KC + YA
Sbjct: 48 DQKQIISLLQRSRHINQVLPI-----HAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASR 102
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
+F+ NV +TALI G G +A+ L+ M + P+ +L AC
Sbjct: 103 IFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLA 162
Query: 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
+ EGR+ + R+ M +L+GK G L +A V M +V+ +
Sbjct: 163 LREGREVHSRALKLGFSSNRLVRLRIM-ELYGKCGELGDARRVFEEM--PEDVVASTVMI 219
Query: 327 AACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386
++ + + A V + R D +T + D + NE+ A + M +NV
Sbjct: 220 SSYSDQGLVEEAGAVFSRVRR-----KDTVCWTAMIDGFVRNEETNRALEAFRGMQGENV 274
Query: 387 R 387
R
Sbjct: 275 R 275
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 140/401 (34%), Positives = 233/401 (58%), Gaps = 19/401 (4%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSH-ILKLGFISHVYVATSLLHE 60
+++M R V SF+ + K+C N+ + +H+ IL GF S +YV S++
Sbjct: 128 NFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDL 187
Query: 61 YVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
YV F G ARK+FDE+ ER+ V+W +I Y+K G++ A F+ +PL+++ +W+AM+
Sbjct: 188 YVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMV 247
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y G L+ F++M + G+ D++T+ V+S C+ LG+V H +++
Sbjct: 248 TGYAQNGRPKEALEYFQKM-QDVGMETDEVTLAGVISACAQLGAV-------KHANWIRD 299
Query: 180 EWEL-------NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
E N + + L+DMY+KCG A VFE+M+ERNV S++++I G A G +
Sbjct: 300 IAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRA 359
Query: 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC 292
AL LF M T ++PN++TF G+L+AC H GLV++GR+ F +++ + + P HY C
Sbjct: 360 HSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYAC 419
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE 352
MVDL G+AG LEEA ++++TM +EPN +WG+ L AC+ H D+A+ + ++
Sbjct: 420 MVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKL--EP 477
Query: 353 NDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
N G + L+ ++Y +WE ++RK++ + +K G S
Sbjct: 478 NGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCS 518
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 91/373 (24%), Positives = 156/373 (41%), Gaps = 77/373 (20%)
Query: 17 FSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSL---LHEYVVTSFGFARKLF 73
+ ++ IL CT F+ I +H+HI++ G YV T L L + V + +F
Sbjct: 43 WRLMSILHDCTLFSQ---IKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVF 99
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
++ N W MI+GY+ G + E+ +F+ RM
Sbjct: 100 GQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRM-------------------------- 133
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG-FIVKNEWELNEQIATILV 192
+G+ P T A+ C ++ + +GK H I+ + + + ++
Sbjct: 134 ------RRDGVGPVSFTFSALFKACG--AALNMDLGKQVHAQTILIGGFASDLYVGNSMI 185
Query: 193 DMYAKCGFLKYALMVFELMEERNVIS-------------------------------WTA 221
D+Y KCGFL A VF+ M ER+V+S WTA
Sbjct: 186 DLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTA 245
Query: 222 LICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY 281
++ G A G ++AL F+ MQ G++ +E+T GV++AC G V + + I E
Sbjct: 246 MVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHA-NWIRDIAERS 304
Query: 282 DLEP--RIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAE 339
P + ++D++ K G +EAY+V M+ E NV + S + H + A
Sbjct: 305 GFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMK-ERNVFSYSSMILGYAMHGRAHSAL 363
Query: 340 RVIKQALRM-VKP 351
++ L+ ++P
Sbjct: 364 QLFHDMLKTEIRP 376
>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
Length = 1031
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 136/398 (34%), Positives = 233/398 (58%), Gaps = 6/398 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF M + V +D +++ ++ +CT + ++ ++ +I VY+ +L+
Sbjct: 638 LALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDY 697
Query: 61 Y-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
+ A K+F + RN VT N MI Y+K ++ AR F+++P +++ SWS+MI
Sbjct: 698 FGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMI 757
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y A + L++FR+M + PD + I +V+S C+HLG++ L GK H ++ +N
Sbjct: 758 SGYSQANHFSDALEIFRQM-QRAKVKPDAIVIASVVSSCAHLGALDL--GKWVHEYVRRN 814
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + + L+DMY KCG K AL VF+ M+E++ +SW ++I G A+ G+ +++L+LF
Sbjct: 815 NIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLF 874
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+ M G +PN +TF GVL AC + LV+EG +F+ + Y LEP+++HYGC+VDL G+
Sbjct: 875 QAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGR 934
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG LE+A I M ++P+ ++W L +C H +AE V K+ L ++P N G +T
Sbjct: 935 AGQLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKK-LNELEPSNSGN-YT 992
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
L+ + Y +W A VR+ M + +VRK+ G S + +
Sbjct: 993 LLSNAYASAHRWSEAMNVRQCMADTDVRKSPGCSAVEA 1030
Score = 268 bits (684), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 141/391 (36%), Positives = 233/391 (59%), Gaps = 8/391 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+QLF R D+++ LK+C LH +++ GF YV T+L++
Sbjct: 75 LQLFRHA-RWHAADDTYAFTFALKACAGLGWPRCCMQLHGLVVRKGFEFQTYVHTALVNV 133
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y++ +R F+E+P +NAV+WN +I G++ G V AR FERMP RNV SWS MI
Sbjct: 134 YILCGCLADSRMAFEEMPVKNAVSWNVVITGFAGWGEVEYARLLFERMPCRNVVSWSGMI 193
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y A + LFR M++ EG++P ++T+ AV+ S++G + L+G++ HG+ K
Sbjct: 194 DGYTRACRPVEAVALFRRMMA-EGISPSEITVLAVVPALSNVGKI--LIGEALHGYCEKE 250
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVF-ELMEERNVISWTALICGSAHRGYSEDALSL 238
+ ++ L+D+YAK G ++ +L VF E+++ RN++SWT++I G A G S A+ L
Sbjct: 251 GLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVSWTSIISGFAMHGLSVKAVEL 310
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F M+ G++PN +TF VL AC H GLV++G +FK + EY++ P ++H+GC++D+ G
Sbjct: 311 FADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGCIIDMLG 370
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG L EA ++IR +E N +W + L C ++ + +M ER +K+ L + + GG F
Sbjct: 371 RAGRLREAEQIIRDFPVEVNATVWRTLLGCCSKYGEVEMGERTMKKILALER--EFGGDF 428
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKA 389
++ ++ T ++ AE VRKL+ +N K+
Sbjct: 429 VVLSNMLTELRRFSDAEIVRKLVDQRNSVKS 459
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 158/347 (45%), Gaps = 69/347 (19%)
Query: 12 VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT-SFGFAR 70
VP D+ + ILK+C N L +H+HI KLG +S ++V+ SL+H Y + +AR
Sbjct: 549 VP-DNLTFPFILKACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYAR 607
Query: 71 KLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDP 130
+FDE+ ++ V+WN++I GYS+ +
Sbjct: 608 SVFDEMVVKDVVSWNSLICGYSQCNR-------------------------------FKD 636
Query: 131 GLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATI 190
L LF+ ++ NEG+ D++T+ V+S C+ LG M +I E++ +
Sbjct: 637 ILALFK-LMQNEGVKADKVTMIKVVSACTRLGDYS--MADYMVRYIEDYCIEVDVYLGNT 693
Query: 191 LVDMYAKCGFLKYALMVFELMEERNV-------------------------------ISW 219
LVD + + G L+ A VF M+ RN+ ISW
Sbjct: 694 LVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISW 753
Query: 220 TALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE 279
+++I G + + DAL +F MQ VKP+ + V+++C H G +D G+ + +
Sbjct: 754 SSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRR 813
Query: 280 EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
+++ ++D++ K G +EA +V + M+ E + + W S +
Sbjct: 814 N-NIKADTIMENSLIDMYMKCGSAKEALQVFKEMK-EKDTLSWNSII 858
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 150/327 (45%), Gaps = 44/327 (13%)
Query: 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV--TSFGFARKLFDELPERN 80
+KS + + I LH++ + G + Y + +L Y + FA K+FD++
Sbjct: 457 VKSFFNIVRMEAIKRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPT 516
Query: 81 AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMIS 140
WN +I+G ++S +A F+++
Sbjct: 517 TFLWNILIRGLAQSDAPADAIAFYKKA--------------------------------Q 544
Query: 141 NEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGF 200
G+ PD +T +L C+ + ++ G+ H I K + ++ L+ +YA CG
Sbjct: 545 GGGMVPDNLTFPFILKACARINALN--EGEQMHNHITKLGLLSDIFVSNSLIHLYAACGN 602
Query: 201 LKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260
L YA VF+ M ++V+SW +LICG + +D L+LF++MQ GVK +++T V++A
Sbjct: 603 LCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSA 662
Query: 261 CVHTG---LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEP 317
C G + D +Y E+Y +E + +VD FG+ G L+ A +V M++
Sbjct: 663 CTRLGDYSMADYMVRYI----EDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVR- 717
Query: 318 NVIIWGSFLAACKEHKQFDMAERVIKQ 344
N++ + +AA + + A ++ Q
Sbjct: 718 NIVTMNAMIAAYAKGQDIVSARKIFDQ 744
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 108/264 (40%), Gaps = 40/264 (15%)
Query: 100 ARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCS 159
A F+R P W A++ AY + L+LFR + D L C+
Sbjct: 47 AHQVFDRRP----TPWHALLKAYSHGPHPQDALQLFRH--ARWHAADDTYAFTFALKACA 100
Query: 160 HLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFL------------------ 201
LG M HG +V+ +E + T LV++Y CG L
Sbjct: 101 GLGWPRCCM--QLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSW 158
Query: 202 -------------KYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
+YA ++FE M RNV+SW+ +I G +A++LF M A G+
Sbjct: 159 NVVITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGIS 218
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+E+T V+ A + G + G ++E L ++ ++DL+ K G ++ +
Sbjct: 219 PSEITVLAVVPALSNVGKILIGEALHGYCEKE-GLVWDVRVGNSLIDLYAKIGSIQNSLR 277
Query: 309 VIRTMRLEPNVIIWGSFLAACKEH 332
V M N++ W S ++ H
Sbjct: 278 VFDEMLDRRNLVSWTSIISGFAMH 301
>gi|225423493|ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 536
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 145/405 (35%), Positives = 235/405 (58%), Gaps = 21/405 (5%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+Q++SQM + D++++ ++LK+C + + H +KLGF ++V +L+
Sbjct: 90 IQIYSQMLENGLYPDNYTLPYVLKACAGLQSCHLGESAHGQSVKLGFWFDIFVGNTLIAM 149
Query: 61 YVVTSFG---FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
Y +SFG AR +FDE+P AV+W MI GY+K G+V AR F+ P+++ W +
Sbjct: 150 Y--SSFGNVRAARCIFDEMPWHTAVSWTVMISGYAKVGDVETARMLFDEAPMKDRGIWGS 207
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
+I+ Y+ + GL++FR M S GL PD+ + ++L C+HLG++ + G H ++
Sbjct: 208 IISGYVQNNCFKEGLQMFRLMQST-GLEPDEAILVSILCACAHLGAMEI--GVWVHRYLD 264
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
+ L+ +++T L+DMYAKCG L A +F+ M +R+ I W A+I G A G ++AL
Sbjct: 265 QLGHPLSVRLSTGLIDMYAKCGSLDIAKKLFDGMSQRDTICWNAMISGMAMNGDGDNALR 324
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LF M+ GVKP+++TF + TAC ++G+ E + + Y++EP+ +HYGC+VDL
Sbjct: 325 LFSEMEKAGVKPDDITFIAIFTACSYSGMAHEAIRLLNSMCTVYNMEPKSEHYGCIVDLL 384
Query: 298 GKAGFLEEAYEVIRTMRLEPN-------VIIWGSFLAACKEHKQFDMAERVIKQALRMVK 350
G+AG L+EA E+I M PN I W + L+AC H Q ++AE A R+
Sbjct: 385 GRAGLLKEAKELILKM---PNSSSPTEQAIAWRALLSACCSHGQTEVAEDA---AQRLFH 438
Query: 351 PENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
E+ G + L+ +LY K + R+RK+M N+ V KA G S +
Sbjct: 439 LEHHSGAYVLLSNLYAAAGKQDHVRRIRKMMENRGVDKAPGCSSV 483
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 86/366 (23%), Positives = 149/366 (40%), Gaps = 76/366 (20%)
Query: 24 KSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL---HEYVVTSFGFARKLFDELPERN 80
+ C H L H+ +L G + + + LL + S A KLF ++
Sbjct: 13 EKCRHMKQLK---EAHAQVLTCGLGTDSFALSRLLAFCSHPLHGSLPHAWKLFQQIQHPT 69
Query: 81 AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMIS 140
NTMIK + G + ++++ +M+
Sbjct: 70 ICICNTMIKAFVLKGKLINT-------------------------------IQIYSQMLE 98
Query: 141 NEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGF 200
N GL PD T+ VL C+ L S L G+SAHG VK + + + L+ MY+ G
Sbjct: 99 N-GLYPDNYTLPYVLKACAGLQSCHL--GESAHGQSVKLGFWFDIFVGNTLIAMYSSFGN 155
Query: 201 LKYALMVFELMEERNVISWTALICGSAHRGYSEDA------------------------- 235
++ A +F+ M +SWT +I G A G E A
Sbjct: 156 VRAARCIFDEMPWHTAVSWTVMISGYAKVGDVETARMLFDEAPMKDRGIWGSIISGYVQN 215
Query: 236 ------LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE-EYDLEPRIQ 288
L +F +MQ+TG++P+E +L AC H G ++ G + +D+ + L R+
Sbjct: 216 NCFKEGLQMFRLMQSTGLEPDEAILVSILCACAHLGAMEIGVWVHRYLDQLGHPLSVRLS 275
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348
++D++ K G L+ A ++ M + + I W + ++ + D A R+ + +
Sbjct: 276 TG--LIDMYAKCGSLDIAKKLFDGMS-QRDTICWNAMISGMAMNGDGDNALRLFSEMEKA 332
Query: 349 -VKPEN 353
VKP++
Sbjct: 333 GVKPDD 338
>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
isoform 1 [Vitis vinifera]
Length = 672
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 138/329 (41%), Positives = 205/329 (62%), Gaps = 9/329 (2%)
Query: 69 ARKLFDELPERNAV-TWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
AR+LF+ +P+R+ + TWN MI G+S+ G V AR+FF+ M R+ SWSAMI Y+ G
Sbjct: 223 ARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGC 282
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
+ L++F +M E + P + + +VLS C++LG+ L G+ H + +N +L+ +
Sbjct: 283 FMEALEIFHQM-QKEKIRPRKFVLPSVLSACANLGA--LDQGRWIHTYAKRNSIQLDGVL 339
Query: 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
T LVDMYAKCG + A VFE M + V SW A+I G A G +EDA+ LF M +
Sbjct: 340 GTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---I 396
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
PNE+TF GVL AC H GLV +G F + +EY +EP+I+HYGC+VDL G+AG L EA
Sbjct: 397 NPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAE 456
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM 367
+V+ ++ EP +WG+ L AC++H ++ ERV K L + +P+N G +TL+ ++Y
Sbjct: 457 KVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLEL-EPQNS-GRYTLLSNIYAK 514
Query: 368 NEKWEGAERVRKLMLNQNVRKARGSSVIS 396
+WE VRKLM + ++ G+S+I
Sbjct: 515 AGRWEEVGEVRKLMKERGIKTTPGTSIID 543
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 92/374 (24%), Positives = 158/374 (42%), Gaps = 73/374 (19%)
Query: 18 SILHILKS-CTHFNNLTVIHHL---HSHILKLGFISHVYVATSLLHEYV------VTSFG 67
+ILH+L + CT T +HHL H+ IL+ G + Y+A SL+ Y SF
Sbjct: 34 AILHLLNTQCT-----TSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFE 88
Query: 68 FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR----NVASWSAMIAAYL 123
+ ++FD + + N WN MIK ++ +A + M + N ++ A++ A
Sbjct: 89 SSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACS 148
Query: 124 NAGAYDPGLKLF-------------------------------REMISNEGLTPDQMTIG 152
+AG G+++ R ++ ++G D +
Sbjct: 149 DAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWN 208
Query: 153 AVLSGCSHLGSV----GLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVF 208
A++ G G V L G I + W ++ +++CG ++ A F
Sbjct: 209 AMIDGYLRFGEVEAARELFEGMPDRSMI--STW-------NAMISGFSRCGMVEVAREFF 259
Query: 209 ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
+ M+ER+ ISW+A+I G G +AL +F MQ ++P + VL+AC + G +D
Sbjct: 260 DEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALD 319
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGC----MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324
+GR Y IQ G +VD++ K G ++ A+EV M V W +
Sbjct: 320 QGRWI-----HTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMS-NKEVSSWNA 373
Query: 325 FLAACKEHKQFDMA 338
+ H + + A
Sbjct: 374 MIGGLAMHGRAEDA 387
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/306 (21%), Positives = 129/306 (42%), Gaps = 19/306 (6%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+++F QM ++ + F + +L +C + L +H++ + + TSL+
Sbjct: 287 LEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDM 346
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR-NVASWSAM 118
Y A ++F+++ + +WN MI G + G +A D F +M + N ++ +
Sbjct: 347 YAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDINPNEITFVGV 406
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
+ A + G GL +F M G+ P G ++ LG GLL A +
Sbjct: 407 LNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIV---DLLGRAGLLT--EAEKVVSS 461
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFEL---MEERNVISWTALICGSAHRGYSEDA 235
E + L+ K G ++ V ++ +E +N +T L A G E+
Sbjct: 462 IPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEV 521
Query: 236 LSLFEMMQATGVKPNEMT-FTGVLTACVHTGLVDEG-----RKYFKMIDEEYDLEPRIQH 289
+ ++M+ G+K T + VH ++ +G + ++M+D+ ++ R+Q
Sbjct: 522 GEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDK---VKERLQM 578
Query: 290 YGCMVD 295
G D
Sbjct: 579 EGYEPD 584
>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 145/431 (33%), Positives = 233/431 (54%), Gaps = 43/431 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F M + D ++ +LK+C+ +NL V +H I+K+G +++++ +L+
Sbjct: 122 LSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAM 181
Query: 61 Y-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGN------VCEARD----------- 102
Y ARK+ D++P R+ V+WN+M+ GY++SG +C+ D
Sbjct: 182 YGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTM 241
Query: 103 --------------------FFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNE 142
FERM +N+ SW+ MIA Y+N + + LF +M
Sbjct: 242 ASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQM-EEC 300
Query: 143 GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLK 202
G+ PD +TI ++L C L + L +G+ H +I K + N + L+DMYAKCG L+
Sbjct: 301 GMKPDAVTIASLLPACGDLSA--LFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLE 358
Query: 203 YALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACV 262
A VF+ M R+V+SWT+++ G DA++LF M +G P+ + F VL+AC
Sbjct: 359 EARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACS 418
Query: 263 HTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
HTGL+D+GR YF+M+ E+Y + PRI+H+ CMVDLFG+AG +EEAY I+ M +EPN +W
Sbjct: 419 HTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVW 478
Query: 323 GSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382
G+ L+AC+ H + D+ V L + P+ G + L+ ++Y W+ VR M
Sbjct: 479 GALLSACRVHSKMDIG-LVAADLLFQLAPKQ-SGYYVLLSNIYAKAGMWKDVMNVRYAMK 536
Query: 383 NQNVRKARGSS 393
++K G S
Sbjct: 537 KIGIKKVPGIS 547
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 119/260 (45%), Gaps = 9/260 (3%)
Query: 87 MIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
+++ YS G AR F+R +NV ++ MI +Y+N Y L +F+ M+S P
Sbjct: 77 LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSC-AFNP 135
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
D T VL CS L + L +G H IVK + N I LV MY KCG L+ A
Sbjct: 136 DHYTFPCVLKACSGLDN--LRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARK 193
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
V + M R+V+SW +++ G A G +DAL + + M + + + T + +T L
Sbjct: 194 VLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSL 253
Query: 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR---LEPNVIIWG 323
E +Y + E + I + M+ ++ EA + M ++P+ +
Sbjct: 254 --ENVQYIHNMFERMTKKNLIS-WNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIA 310
Query: 324 SFLAACKEHKQFDMAERVIK 343
S L AC + + R+ K
Sbjct: 311 SLLPACGDLSALFLGRRLHK 330
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 7/175 (4%)
Query: 173 HGFIVKNE-WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGY 231
H IV NE ++ +A L+ Y+ G A +F+ E+NV+ + +I +
Sbjct: 58 HSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNL 117
Query: 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE--EYDLEPRIQH 289
+ALS+F++M + P+ TF VL AC +GL D R ++ D + L+ +
Sbjct: 118 YVEALSIFQVMLSCAFNPDHYTFPCVLKAC--SGL-DNLRVGLQVHDAIVKVGLDTNLFI 174
Query: 290 YGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
+V ++GK G L EA +V+ M +V+ W S +A + QFD A + K+
Sbjct: 175 GNALVAMYGKCGCLREARKVLDQMPYR-DVVSWNSMVAGYAQSGQFDDALEICKE 228
>gi|242052493|ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
gi|241927367|gb|EES00512.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
Length = 506
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 135/360 (37%), Positives = 215/360 (59%), Gaps = 7/360 (1%)
Query: 38 LHSHILKLGFI-SHVYVATSLLHEYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSG 95
LHS +L+ G + S +V+ SL+ Y AR +F E+ R+ V WN MI GY K+G
Sbjct: 100 LHSLLLRTGHVASDTHVSASLVQLYCTCRHVADARSVFHEMAVRDVVAWNVMIAGYVKAG 159
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155
++ AR+ F+ MP RNV SW+ +I Y + +++FR M EG+ PD + + +VL
Sbjct: 160 DLAHARELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEVFRRM-QVEGIEPDGVALLSVL 218
Query: 156 SGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERN 215
S C LG+V L G+ H F+V+ + ++DMY KCG ++ A+ VFE MEE++
Sbjct: 219 SACGDLGAVDL--GEWVHRFVVRRGLRQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKS 276
Query: 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275
V++WT LI G A G A+ +F M+ + PN++TF +L+AC H GL D GR YF
Sbjct: 277 VVTWTTLIAGFALHGLGLQAVEMFRRMERENMAPNDVTFLAILSACSHVGLTDLGRWYFN 336
Query: 276 MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQF 335
++ +Y ++P+++HYGCMVDL G+AG L+EA ++++ M L+ N IWG+ LAA + H
Sbjct: 337 IMVSQYRIKPQVEHYGCMVDLLGRAGCLKEAQDLVKDMPLKANAAIWGALLAASRTHGDA 396
Query: 336 DMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
D+ E + + + +P N G + L+ +++ E+W+ ++RK M + +R G+S I
Sbjct: 397 DLGEEALVHLIEL-EPSNSGN-YILLSNIFAEQERWDDVSKLRKAMKERGLRNVPGASSI 454
>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 726
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 143/396 (36%), Positives = 228/396 (57%), Gaps = 6/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF M + DS + +L +C H NL+ +H + G+ ++ T+L++
Sbjct: 207 LRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINM 266
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + ARK++D L ++ + M+ GY+K G V +AR F++M R++ WSAMI
Sbjct: 267 YANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMI 326
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y + LKLF EM+ + PDQ+T+ +V+S CSH+G+ L H ++ ++
Sbjct: 327 SGYAESDQPQEALKLFDEMLQKRSV-PDQITMLSVISACSHVGA--LAQANWIHTYVDRS 383
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + L+DMYAKCG L A VFE M +NVISW+++I A G ++ A+ LF
Sbjct: 384 GFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLF 443
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M+ ++PN +TF GVL AC H GLV+EG K F + E+ + P +HYGCMVDL+ +
Sbjct: 444 RRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCR 503
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
A FL +A E+I TM PNVIIWGS ++AC+ H + ++ E K+ L + +P++DG +
Sbjct: 504 ANFLRKAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLEL-EPDHDGALVV 562
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L ++Y ++W +RK M + + K + SS I
Sbjct: 563 L-SNIYAKEKRWNDVGLIRKSMSYKGISKEKASSRI 597
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 106/380 (27%), Positives = 171/380 (45%), Gaps = 77/380 (20%)
Query: 15 DSFSILHILKSCTH---FNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFAR 70
D FS +LK+ + FN+ IH L S KLGF+ ++ T L+ Y AR
Sbjct: 120 DRFSFPSLLKAVSKVSAFNHGLEIHGLAS---KLGFVDDPFIQTGLIAMYASCRRIMDAR 176
Query: 71 KLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDP 130
LFD++ +AV WN +I GY ++G+ YD
Sbjct: 177 LLFDKMCHPDAVAWNMIIDGYCQNGH-------------------------------YDD 205
Query: 131 GLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATI 190
L+LF +M S++ + PD + + VLS C H G+ L G++ H F+ N + ++ + T
Sbjct: 206 ALRLFEDMRSSD-MKPDSVILCTVLSACGHAGN--LSYGRTIHEFVKDNGYAIDSHLQTA 262
Query: 191 LVDMYAKC-------------------------------GFLKYALMVFELMEERNVISW 219
L++MYA C G +K A +F+ M ER+++ W
Sbjct: 263 LINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCW 322
Query: 220 TALICGSAHRGYSEDALSLF-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMID 278
+A+I G A ++AL LF EM+Q V P+++T V++AC H G + + +D
Sbjct: 323 SAMISGYAESDQPQEALKLFDEMLQKRSV-PDQITMLSVISACSHVGALAQANWIHTYVD 381
Query: 279 EEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
+ ++D++ K G L +A EV M NVI W S + A H D A
Sbjct: 382 RS-GFGRALSVNNALIDMYAKCGNLVKAREVFENMP-RKNVISWSSMINAFAMHGNADSA 439
Query: 339 ERVIKQALRMVKPENDGGVF 358
++ ++ ++ V E +G F
Sbjct: 440 IKLFRR-MKEVNIEPNGVTF 458
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 88/177 (49%), Gaps = 5/177 (2%)
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
L+ + + D+ + ++L S + + G HG K + + I T L+
Sbjct: 107 LYHNLRAINAFALDRFSFPSLLKAVSKVSAFN--HGLEIHGLASKLGFVDDPFIQTGLIA 164
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
MYA C + A ++F+ M + ++W +I G G+ +DAL LFE M+++ +KP+ +
Sbjct: 165 MYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVI 224
Query: 254 FTGVLTACVHTGLVDEGRKYFKMI-DEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEV 309
VL+AC H G + GR + + D Y ++ +Q +++++ G ++ A ++
Sbjct: 225 LCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQ--TALINMYANCGAMDLARKI 279
>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
small; Tetratricopeptide-like helical [Medicago
truncatula]
Length = 971
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 138/396 (34%), Positives = 234/396 (59%), Gaps = 6/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++++ +M + V + +++ ++ SC+ +L + H +I + G + + +L+
Sbjct: 244 IKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDM 303
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
YV AR LFD + ++ V+W TM+ GY++ G + AR+ ++P ++V W+A+I
Sbjct: 304 YVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAII 363
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ + A L LF EM + PD++T+ LS CS LG+ L +G H +I ++
Sbjct: 364 SGCVQAKQGKEALALFHEM-QIRTIEPDKVTMVNCLSACSQLGA--LDVGIWIHHYIERH 420
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ ++ + T LVDMYAKCG + AL VFE + +RN ++WTA+ICG A G ++DALS F
Sbjct: 421 KLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYF 480
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M G+ P+E+TF GVL+AC H GLV+EGRKYF + ++++ P+++HY CMVDL G+
Sbjct: 481 SKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLGR 540
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG LEEA E+++ M + + + G+ AC+ + + ER + L + P+ D G +
Sbjct: 541 AGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLE-IDPQ-DSGNYV 598
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ +Y+ + W+ A RKLM ++ V K G S++
Sbjct: 599 LLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLV 634
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 141/325 (43%), Gaps = 57/325 (17%)
Query: 39 HSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVC 98
+S L LG + HV FGF +F N I G +
Sbjct: 172 YSSCLGLGVLGHVL------------KFGFECDIF---------VHNASITMLLSCGELS 210
Query: 99 EARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGC 158
A D F + +R++ +W++MI + G +K+++EM E + P+++T+ ++S C
Sbjct: 211 VAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEM-EAEKVRPNEITMIGMISSC 269
Query: 159 SHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVIS 218
S + + L GK H +I ++ E + L+DMY KCG L A ++F+ M ++ ++S
Sbjct: 270 SQVQDLNL--GKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVS 327
Query: 219 WTALICGSAHRGY-------------------------------SEDALSLFEMMQATGV 247
WT ++ G A G+ ++AL+LF MQ +
Sbjct: 328 WTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTI 387
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
+P+++T L+AC G +D G I E + L + +VD++ K G + A
Sbjct: 388 EPDKVTMVNCLSACSQLGALDVGIWIHHYI-ERHKLSIDVALGTALVDMYAKCGNIARAL 446
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEH 332
+V + + N + W + + H
Sbjct: 447 QVFEEIP-QRNCLTWTAVICGLALH 470
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 134/287 (46%), Gaps = 40/287 (13%)
Query: 102 DFFERMPLR----NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSG 157
D+ R+ R NV SW+A I Y+ +G + G L++ M+ L PD T +L G
Sbjct: 108 DYCTRILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKG 167
Query: 158 CSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVI 217
C G +G G ++K +E + + + M CG L A VF R+++
Sbjct: 168 CC--GQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLV 225
Query: 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI 277
+W ++I G RG + +A+ +++ M+A V+PNE+T G++++C ++ G+++ I
Sbjct: 226 TWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYI 285
Query: 278 DEEYDLEPRIQHYGCMVDLFGKA-------------------------------GFLEEA 306
+E+ LE I ++D++ K GFL+ A
Sbjct: 286 -KEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVA 344
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ-ALRMVKPE 352
E++ + E +V+ W + ++ C + KQ A + + +R ++P+
Sbjct: 345 REILYKIP-EKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPD 390
>gi|115482212|ref|NP_001064699.1| Os10g0442700 [Oryza sativa Japonica Group]
gi|31432332|gb|AAP53975.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113639308|dbj|BAF26613.1| Os10g0442700 [Oryza sativa Japonica Group]
gi|215694632|dbj|BAG89823.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768315|dbj|BAH00544.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 493
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 141/367 (38%), Positives = 229/367 (62%), Gaps = 13/367 (3%)
Query: 38 LHSHILKLGFISH-VYVATSLLHEYVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSG 95
+H+ L+ G + H ++V+ SL+H Y + G AR+LFDE+P N V+WN ++ GY+K
Sbjct: 84 VHAQPLRRGLLPHDLHVSNSLVHMYAACALPGLARRLFDEIPRPNHVSWNALLDGYAKCR 143
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM----ISNEGLTPDQMTI 151
++ AR F RMP R+V SWSAMI + G + L +F M ++G+ + +T+
Sbjct: 144 DLPAARRVFARMPQRDVVSWSAMIDGCVKCGEHREALAVFEMMEATAARHDGVRANDVTM 203
Query: 152 GAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFEL- 210
+VL C+HLG L+ G+ H ++ ++ + LN ++AT LVDMYAKCG + AL VF+
Sbjct: 204 VSVLGACAHLGD--LVRGRKMHRYLEEHGFPLNIRLATSLVDMYAKCGAIVEALEVFQAV 261
Query: 211 -MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
+E +V+ W A+I G A G S ++L +F+ M+ GV P+E+T+ +L+ACVH GLVDE
Sbjct: 262 PVENTDVLIWNAVIGGLAVHGMSRESLQMFQKMEHAGVVPDEITYLSLLSACVHGGLVDE 321
Query: 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAAC 329
+F+ + E L P ++HY C+VD+ G+AG LEEAY V+++M ++P+V + G+ L AC
Sbjct: 322 AWSFFRSL-EAQGLRPHVEHYACLVDVLGRAGRLEEAYGVVKSMPMKPSVSVLGALLNAC 380
Query: 330 KEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKA 389
H ++ E V +Q + + +P++DG L ++Y + +W+ A++ RK+M + V+K
Sbjct: 381 HLHGWVELGEAVGRQLVHL-QPDHDGRYIGL-SNIYAVARRWQEAKKARKVMEERGVKKV 438
Query: 390 RGSSVIS 396
G S I
Sbjct: 439 PGFSEID 445
>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 679
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 155/455 (34%), Positives = 236/455 (51%), Gaps = 67/455 (14%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF ++ + +P D+F++ ++K C + +H LK+GF S V+V SL++ Y
Sbjct: 100 LFHELVHEYLP-DNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYS 158
Query: 63 VTS------------------------FGFAR--------KLFDELPERNAVTWNTMIKG 90
G+AR +LF+E+PER+A +W ++ G
Sbjct: 159 KCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMPERDAFSWTVLVDG 218
Query: 91 YSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM------------ 138
SK G V AR F++MP RN+ SW+AMI Y+ +G +D L+LF +M
Sbjct: 219 LSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMI 278
Query: 139 ------------------ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
+ G P T+ +VLS S L +G G+ H ++ KN
Sbjct: 279 AGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLG--KGRWIHSYMEKNG 336
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+EL+ + T L++MYAKCG ++ AL VF ++++ V WTA+I G G + AL+LF
Sbjct: 337 FELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFL 396
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M TG+KPN + F GVL AC H GLVD+GR+YF M+ EY +EP ++HYGC+VD+ +A
Sbjct: 397 EMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRA 456
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G LEEA I M + PN +IW S L + H + D+ E ++ + V PE G + L
Sbjct: 457 GHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIE-VAPETI-GCYIL 514
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y + WE VR++M + RK G S +
Sbjct: 515 LSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSV 549
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 146/317 (46%), Gaps = 48/317 (15%)
Query: 35 IHHLHSHILKLGFISHVYVATSLLHEYV---VTSFGFARKLFDELPERNAVTWNTMIKGY 91
+ LH+ LK +H +V++ LL Y + G+AR +FD + R+ + WNT+IK Y
Sbjct: 29 VEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCY 88
Query: 92 SKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTI 151
+ N ++D G+ LF E++ PD T+
Sbjct: 89 VE------------------------------NQFSHD-GIVLFHELVHE--YLPDNFTL 115
Query: 152 GAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELM 211
V+ GC+ LG V GK HG +K + + + LV+MY+KCG + A VF+ M
Sbjct: 116 PCVIKGCARLGVVQ--EGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGM 173
Query: 212 EERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR 271
+++V+ W +LI G A G + AL LFE M + + ++T ++ G V+ R
Sbjct: 174 IDKDVVLWNSLIDGYARCGEIDIALQLFEEMP----ERDAFSWTVLVDGLSKCGKVESAR 229
Query: 272 KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKE 331
K F + + + M++ + K+G + A E+ M + +++ W +A +
Sbjct: 230 KLFDQMPCR-----NLVSWNAMINGYMKSGDFDSALELFYQMPIW-DLVTWNLMIAGYEL 283
Query: 332 HKQFDMAERVIKQALRM 348
+ QF A ++ L++
Sbjct: 284 NGQFMDAVKMFFMMLKL 300
>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
Length = 572
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 145/391 (37%), Positives = 226/391 (57%), Gaps = 6/391 (1%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV- 62
F++M V SD + +L +C H +L +HS++L + + +++++L++ Y
Sbjct: 159 FAKMKNSGVLSDQLILATVLSACGHIRHLRTGKSIHSYMLVSDILINAHLSSALINLYAS 218
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
S A KL++ +P ++ V+ M+ GY+++ AR F+ MP ++V SWSAMI+ Y
Sbjct: 219 CASMEMAEKLYNGMPRKDLVSSTAMVFGYARNRKFEIARYIFDGMPEKDVVSWSAMISGY 278
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
++ + L LF +M G+ PD++T+ +V+S C++LGS L K H FI N
Sbjct: 279 ADSNQPNEALSLFNDM-QECGIRPDEVTMLSVISACANLGS--LDKAKWIHAFIKNNGLN 335
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
I L+DM+AKCG + AL +F M ++NVI+WT++I A G + AL LFE M
Sbjct: 336 KILHICNALIDMFAKCGGINLALNIFNEMPQKNVITWTSMITAFAMHGDGKSALCLFEQM 395
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
+ GV+PNE+TF +L AC H GLV EGR F + ++Y +EP+ +HYGCMVDL G+A
Sbjct: 396 RNEGVEPNEVTFLNLLYACCHAGLVHEGRSLFSSMVQQYGIEPKHEHYGCMVDLLGRAKL 455
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362
++EA +I +M L PNV +WGS LAAC H + K+ L++ P +DG L+
Sbjct: 456 MQEAVNLIESMHLRPNVPVWGSLLAACWMHGDLKLGAFAAKKILQL-DPNHDGAS-VLLS 513
Query: 363 DLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
+Y ++ A+ VR +M Q V K G S
Sbjct: 514 KIYMKSDNLNDAQEVRDVMKLQGVSKETGLS 544
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 143/326 (43%), Gaps = 68/326 (20%)
Query: 39 HSHILKLGFISHVYVATSLLHEYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNV 97
H+ ++G + +V T+L+ Y G ARK+FD + R+ V+W M+ Y ++ N
Sbjct: 93 HALAFRVGSLDDGFVRTALVGAYAACGCVGDARKVFDGMAVRDVVSWGVMLDSYCQTRNY 152
Query: 98 CEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSG 157
EA F +M N G+ DQ+ + VLS
Sbjct: 153 KEALLQFAKM--------------------------------KNSGVLSDQLILATVLSA 180
Query: 158 CSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFL---------------- 201
C H+ L GKS H +++ ++ +N +++ L+++YA C +
Sbjct: 181 CGHIRH--LRTGKSIHSYMLVSDILINAHLSSALINLYASCASMEMAEKLYNGMPRKDLV 238
Query: 202 ---------------KYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
+ A +F+ M E++V+SW+A+I G A +ALSLF MQ G
Sbjct: 239 SSTAMVFGYARNRKFEIARYIFDGMPEKDVVSWSAMISGYADSNQPNEALSLFNDMQECG 298
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
++P+E+T V++AC + G +D+ K+ + L + ++D+F K G + A
Sbjct: 299 IRPDEVTMLSVISACANLGSLDKA-KWIHAFIKNNGLNKILHICNALIDMFAKCGGINLA 357
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEH 332
+ M + NVI W S + A H
Sbjct: 358 LNIFNEMP-QKNVITWTSMITAFAMH 382
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 37/226 (16%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF+ M + D ++L ++ +C + +L +H+ I G +++ +L+
Sbjct: 288 LSLFNDMQECGIRPDEVTMLSVISACANLGSLDKAKWIHAFIKNNGLNKILHICNALIDM 347
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
+ A +F+E+P++N +TW +MI ++ G+ A FE+M
Sbjct: 348 FAKCGGINLALNIFNEMPQKNVITWTSMITAFAMHGDGKSALCLFEQM------------ 395
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
NEG+ P+++T +L C H G V G+S +V+
Sbjct: 396 --------------------RNEGVEPNEVTFLNLLYACCHAGLVH--EGRSLFSSMVQQ 433
Query: 180 -EWELNEQIATILVDMYAKCGFLKYALMVFELMEER-NVISWTALI 223
E + +VD+ + ++ A+ + E M R NV W +L+
Sbjct: 434 YGIEPKHEHYGCMVDLLGRAKLMQEAVNLIESMHLRPNVPVWGSLL 479
>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
Length = 673
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 138/329 (41%), Positives = 205/329 (62%), Gaps = 9/329 (2%)
Query: 69 ARKLFDELPERNAV-TWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
AR+LF+ +P+R+ + TWN MI G+S+ G V AR+FF+ M R+ SWSAMI Y+ G
Sbjct: 224 ARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGC 283
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
+ L++F +M E + P + + +VLS C++LG+ L G+ H + +N +L+ +
Sbjct: 284 FMEALEIFHQM-QKEKIRPRKFVLPSVLSACANLGA--LDQGRWIHTYAKRNSIQLDGVL 340
Query: 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
T LVDMYAKCG + A VFE M + V SW A+I G A G +EDA+ LF M +
Sbjct: 341 GTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---I 397
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
PNE+TF GVL AC H GLV +G F + +EY +EP+I+HYGC+VDL G+AG L EA
Sbjct: 398 YPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAE 457
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM 367
+V+ ++ EP +WG+ L AC++H ++ ERV K L + +P+N G +TL+ ++Y
Sbjct: 458 KVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLEL-EPQNS-GRYTLLSNIYAK 515
Query: 368 NEKWEGAERVRKLMLNQNVRKARGSSVIS 396
+WE VRKLM + ++ G+S+I
Sbjct: 516 AGRWEEVGEVRKLMKERGIKTTPGTSIID 544
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 91/374 (24%), Positives = 158/374 (42%), Gaps = 73/374 (19%)
Query: 18 SILHILKS-CTHFNNLTVIHHL---HSHILKLGFISHVYVATSLLHEYV------VTSFG 67
+ILH+L + CT T +HHL H+ IL+ G + Y+A SL+ Y SF
Sbjct: 35 AILHLLNTQCT-----TSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFE 89
Query: 68 FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR----NVASWSAMIAAYL 123
+ ++FD + + N WN MIK ++ +A + M + N ++ A++ A
Sbjct: 90 SSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACS 149
Query: 124 NAGAYDPGLKLF-------------------------------REMISNEGLTPDQMTIG 152
++G G+++ R ++ ++G D +
Sbjct: 150 DSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWN 209
Query: 153 AVLSGCSHLGSV----GLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVF 208
A++ G G V L G I + W ++ +++CG ++ A F
Sbjct: 210 AMIDGYLRFGEVEAARELFEGMPDRSMI--STW-------NAMISGFSRCGMVEVAREFF 260
Query: 209 ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
+ M+ER+ ISW+A+I G G +AL +F MQ ++P + VL+AC + G +D
Sbjct: 261 DEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALD 320
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGC----MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324
+GR Y IQ G +VD++ K G ++ A+EV M V W +
Sbjct: 321 QGRWI-----HTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMS-NKEVSSWNA 374
Query: 325 FLAACKEHKQFDMA 338
+ H + + A
Sbjct: 375 MIGGLAMHGRAEDA 388
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/306 (21%), Positives = 129/306 (42%), Gaps = 19/306 (6%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+++F QM ++ + F + +L +C + L +H++ + + TSL+
Sbjct: 288 LEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDM 347
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL-RNVASWSAM 118
Y A ++F+++ + +WN MI G + G +A D F +M + N ++ +
Sbjct: 348 YAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDIYPNEITFVGV 407
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
+ A + G GL +F M G+ P G ++ LG GLL A +
Sbjct: 408 LNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIV---DLLGRAGLLT--EAEKVVSS 462
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFEL---MEERNVISWTALICGSAHRGYSEDA 235
E + L+ K G ++ V ++ +E +N +T L A G E+
Sbjct: 463 IPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEV 522
Query: 236 LSLFEMMQATGVKPNEMT-FTGVLTACVHTGLVDEG-----RKYFKMIDEEYDLEPRIQH 289
+ ++M+ G+K T + VH ++ +G + ++M+D+ ++ R+Q
Sbjct: 523 GEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDK---VKERLQM 579
Query: 290 YGCMVD 295
G D
Sbjct: 580 EGYEPD 585
>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
Length = 747
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 136/398 (34%), Positives = 235/398 (59%), Gaps = 10/398 (2%)
Query: 1 MQLFSQMHRQ-SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+Q FS + + S+ D FS+ L +C + L+ +H +I++ F + V +L+
Sbjct: 224 LQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALIS 283
Query: 60 EYVVTS-FGFARKLFDE--LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
Y + AR++ ++ + + + + + ++ GY K G++ AR F + +V +W+
Sbjct: 284 MYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWT 343
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
AMI Y+ G + +++F+ M+S EG P+ T+ A+LS S + S L GK H
Sbjct: 344 AMIVGYVQNGLNNDAIEVFKTMVS-EGPRPNSFTLAAMLSASSSVTS--LNHGKQIHASA 400
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE-RNVISWTALICGSAHRGYSEDA 235
+++ L+ + L MYAK G + A VF L+ + R+ +SWT++I A G E+A
Sbjct: 401 IRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEA 460
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
+ LFE M G+KP+ +T+ GVL+AC H GLV++GR YF ++ + ++P + HY CMVD
Sbjct: 461 IELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVD 520
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
LFG+AG L+EAY+ + M +EP+VI WGS L++CK +K D+A +V + L +++P N+
Sbjct: 521 LFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLA-KVAAERLLLIEP-NNS 578
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
G ++ + ++Y+ KW+ A ++RKLM + V+K +G S
Sbjct: 579 GAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLS 616
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 101/388 (26%), Positives = 185/388 (47%), Gaps = 40/388 (10%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+++F M + V F++ ++L SC + + +HS ++KLG + V VA SLL+
Sbjct: 92 IKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNM 151
Query: 61 YVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y T A+ +FD + RN +WN MI + G V A FE + R++ SW++MI
Sbjct: 152 YAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMI 211
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A G + L+ F ++ + L PD+ ++ + LS C++L L GK HG+IV+
Sbjct: 212 AGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEK--LSFGKQIHGYIVRT 269
Query: 180 EWELNEQIATILVDMYAKCGFLKY---------------------------------ALM 206
++ + + L+ MYAK G ++ A
Sbjct: 270 MFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQ 329
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
+F +++ +V++WTA+I G G + DA+ +F+ M + G +PN T +L+A
Sbjct: 330 IFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTS 389
Query: 267 VDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSF 325
++ G++ + I L P + + + ++ KAG + A +V +R + + W S
Sbjct: 390 LNHGKQIHASAIRSGEALSPSVGN--ALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSM 447
Query: 326 LAACKEHKQFDMAERVIKQALRM-VKPE 352
+ A +H + A + +Q L + +KP+
Sbjct: 448 IMALAQHGLGEEAIELFEQMLTLGIKPD 475
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 155/303 (51%), Gaps = 39/303 (12%)
Query: 42 ILKLGFISHVYVATSLLHEYVVTSFGF-ARKLFDELPERNAVTWNTMIKGYSKSGNVCEA 100
++KLG VY+ +L++ Y T F A LF+E+P + +WNT++ GY+K G + +A
Sbjct: 1 MVKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKA 60
Query: 101 RDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSH 160
F+ +P+R+ SW+ +I Y G ++ +K+F +M+ ++ L P Q T+ VL+ C+
Sbjct: 61 HQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVL-PTQFTLTNVLASCAA 119
Query: 161 LGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK----------------------- 197
GS G+ GK H F+VK +A L++MYAK
Sbjct: 120 TGSRGI--GKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWN 177
Query: 198 --------CGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF-EMMQATGVK 248
CG + AL FEL+ ER+++SW ++I G G+ +AL F +++ T +K
Sbjct: 178 AMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLK 237
Query: 249 PNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
P+ + L+AC + + G++ + ++ +D + + ++ ++ K+G +E A
Sbjct: 238 PDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGN--ALISMYAKSGGVEIAR 295
Query: 308 EVI 310
+I
Sbjct: 296 RII 298
>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
Group]
gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
Length = 651
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 137/399 (34%), Positives = 235/399 (58%), Gaps = 10/399 (2%)
Query: 1 MQLFSQMHRQS--VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL 58
++LF +M + V D +++ + C +L + LH + G V + +L+
Sbjct: 211 LELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLELGRRLHGFVDSDGVSCTVRLMNALM 270
Query: 59 HEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
Y+ S A+ +F+ + R V+W TMI G++K G + +AR F+ MP R+V W+A
Sbjct: 271 DMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNA 330
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
++ Y+ L LF EM + PD++T+ +L+ CS LG+ L MG H +I
Sbjct: 331 LMTGYVQCKQCKEALSLFHEM-QEASVVPDEITMVNLLTACSQLGA--LEMGMWVHRYIE 387
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
K+ + + T L+DMYAKCG ++ A+ +F+ + E+N ++WTA+ICG A+ G++ +A+
Sbjct: 388 KHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLANHGHANEAIE 447
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
F M G KP+E+TF GVL+AC H GLV EGR++F +++ +Y LE +++HY CM+DL
Sbjct: 448 HFRTMIELGQKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKMKHYSCMIDLL 507
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE-NDGG 356
G+AG L+EA +++ TM +EP+ ++WG+ AC+ + E K A+++V+ + +D G
Sbjct: 508 GRAGHLDEAEQLVNTMPMEPDAVVWGAIFFACRMQGNISLGE---KAAMKLVEIDPSDSG 564
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++ L+ ++Y + A++VR +M + V K G S I
Sbjct: 565 IYVLLANMYAEANMRKKADKVRAMMRHLGVEKVPGCSCI 603
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 98/351 (27%), Positives = 155/351 (44%), Gaps = 68/351 (19%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT-SFGFARKLF 73
D + +LK+C +H+L+LG S V+V + H + AR+LF
Sbjct: 124 DHLTFPFLLKACARLREWGYGDAALAHVLRLGLDSDVFVVNAATHFLSIRGPMEDARRLF 183
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
D P R+ V+WNT+I GY + GN EA L+
Sbjct: 184 DRSPVRDLVSWNTLIGGYVRRGNPAEA-------------------------------LE 212
Query: 134 LFREMISNEGLT-PDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILV 192
LF M++ + + PD++T+ A +SGC + + L G+ HGF+ + ++ L+
Sbjct: 213 LFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLEL--GRRLHGFVDSDGVSCTVRLMNALM 270
Query: 193 DMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED------------------ 234
DMY KCG L+ A VFE +E R V+SWT +I G A G +D
Sbjct: 271 DMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNA 330
Query: 235 -------------ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY 281
ALSLF MQ V P+E+T +LTAC G ++ G + I E++
Sbjct: 331 LMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWVHRYI-EKH 389
Query: 282 DLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
L + ++D++ K G +E+A + + + E N + W + + H
Sbjct: 390 RLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIP-EKNALTWTAMICGLANH 439
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 101/226 (44%), Gaps = 13/226 (5%)
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
L L+R ++ + PD +T +L C+ L G G +A +++ + + +
Sbjct: 109 LPLYRALLRSGTARPDHLTFPFLLKACARLREWGY--GDAALAHVLRLGLDSDVFVVNAA 166
Query: 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG--VKP 249
+ G ++ A +F+ R+++SW LI G RG +AL LF M A V+P
Sbjct: 167 THFLSIRGPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRP 226
Query: 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEV 309
+E+T ++ C ++ GR+ +D + + ++ ++D++ K G LE A V
Sbjct: 227 DEVTMIAAVSGCGQMRDLELGRRLHGFVDSD-GVSCTVRLMNALMDMYIKCGSLEMAKSV 285
Query: 310 IRTMRLEPNVII-WGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
R+E ++ W + + + D A +V + PE D
Sbjct: 286 FE--RIEHRTVVSWTTMIVGFAKFGLMDDARKVFDE-----MPERD 324
>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 868
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 140/395 (35%), Positives = 220/395 (55%), Gaps = 6/395 (1%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
QL +M R+ V + + + IL++CT L +H+ + K+GF + T++ + Y
Sbjct: 350 QLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMY 409
Query: 62 V-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
S A ++F ++ +N V W + + Y K G++ A F MP RNV SW+ MIA
Sbjct: 410 AKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIA 469
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y G +L M + EG PD++T+ +L C L GL GK H VK
Sbjct: 470 GYAQNGDIVKVFELLSSMKA-EGFQPDRVTVITILEACGALA--GLERGKLVHAEAVKLG 526
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
E + +AT L+ MY+KCG + A VF+ M R+ ++W A++ G G +A+ LF+
Sbjct: 527 LESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFK 586
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M V PNE+T T V++AC GLV EGR+ F+M+ E++ + PR QHYGCMVDL G+A
Sbjct: 587 RMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRA 646
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G L+EA E I++M EP++ +W + L ACK H +AER L + +P + V+
Sbjct: 647 GRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILEL-EP-SYASVYIT 704
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y +W+ + +VR++M ++ ++K RG S I
Sbjct: 705 LSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSI 739
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 96/347 (27%), Positives = 171/347 (49%), Gaps = 42/347 (12%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV 63
F +M ++ + + L ILK+C +++ L +H+ + +G + V VAT+L+
Sbjct: 145 FERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALI----- 199
Query: 64 TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL 123
TM YSK G + A + F +M RNV SW+A+I A
Sbjct: 200 ----------------------TM---YSKCGEISVACEVFHKMTERNVVSWTAIIQANA 234
Query: 124 NAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWEL 183
+ +L+ +M+ G++P+ +T ++L+ C+ L G+ H I + E
Sbjct: 235 QHRKLNEAFELYEQML-QAGISPNAVTFVSLLNSCN--TPEALNRGRRIHSHISERGLET 291
Query: 184 NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE-----DALSL 238
+ +A L+ MY KC ++ A +F+ M +R+VISW+A+I G A GY + + L
Sbjct: 292 DMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQL 351
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLF 297
E M+ GV PN++TF +L AC G +++GR+ + ++ ++L+ +Q + +++
Sbjct: 352 LERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQ--TAIFNMY 409
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
K G + EA +V M NV+ W SFL+ + AE+V +
Sbjct: 410 AKCGSIYEAEQVFSKM-ANKNVVAWTSFLSMYIKCGDLSSAEKVFSE 455
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 109/357 (30%), Positives = 168/357 (47%), Gaps = 47/357 (13%)
Query: 71 KLFDELP-ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYD 129
K DEL E + N++I YSK +V A F RM LR+V +WS+MIAAY AG
Sbjct: 80 KQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAY--AGNNH 137
Query: 130 PGLKLFR--EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
P K F E +++ + P+++T ++L C++ L G+ H + E + +
Sbjct: 138 PA-KAFDTFERMTDANIEPNRITFLSILKACNNYSI--LEKGRKIHTIVKAMGMETDVAV 194
Query: 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
AT L+ MY+KCG + A VF M ERNV+SWTA+I +A +A L+E M G+
Sbjct: 195 ATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGI 254
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE---EYDL-----------------EPR- 286
PN +TF +L +C ++ GR+ I E E D+ E R
Sbjct: 255 SPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEARE 314
Query: 287 ---------IQHYGCMVDLFGKAGF-----LEEAYEVIRTMRLE---PNVIIWGSFLAAC 329
+ + M+ + ++G+ ++E ++++ MR E PN + + S L AC
Sbjct: 315 IFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRAC 374
Query: 330 KEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386
H + R I L V E D + T I ++Y AE+V M N+NV
Sbjct: 375 TAHGALEQG-RQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNV 430
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 96/382 (25%), Positives = 174/382 (45%), Gaps = 73/382 (19%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+L+ QM + + ++ + + +L SC L +HSHI + G + + VA +L+ Y
Sbjct: 244 ELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMY 303
Query: 62 V-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
S AR++FD + +R+ ++W+ MI GY++SG
Sbjct: 304 CKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSG------------------------- 338
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y + + D +L M EG+ P+++T ++L C+ G+ L G+ H + K
Sbjct: 339 -YKDKESIDEVFQLLERM-RREGVFPNKVTFMSILRACTAHGA--LEQGRQIHAELSKVG 394
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALI-----CG---SAHRGYS 232
+EL+ + T + +MYAKCG + A VF M +NV++WT+ + CG SA + +S
Sbjct: 395 FELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFS 454
Query: 233 E--------------------DALSLFEM---MQATGVKPNEMTFTGVLTACVHTGLVDE 269
E D + +FE+ M+A G +P+ +T +L AC ++
Sbjct: 455 EMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLER 514
Query: 270 GRKYFKMIDEE---YDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
G K++ E LE ++ ++ K G + EA V M + + W + L
Sbjct: 515 G----KLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMS-NRDTVAWNAML 569
Query: 327 AACKEH----KQFDMAERVIKQ 344
A +H + D+ +R++K+
Sbjct: 570 AGYGQHGDGLEAVDLFKRMLKE 591
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 103/210 (49%), Gaps = 4/210 (1%)
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
+I GL + T G V+ C+ + GK H + + E++ + L++ Y+K
Sbjct: 46 IIKQRGLLVNSNTYGCVIEHCAK--ARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSK 103
Query: 198 CGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGV 257
+ A VF M R+V++W+++I A + A FE M ++PN +TF +
Sbjct: 104 FEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSI 163
Query: 258 LTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEP 317
L AC + ++++GRK ++ + +E + ++ ++ K G + A EV M E
Sbjct: 164 LKACNNYSILEKGRKIHTIV-KAMGMETDVAVATALITMYSKCGEISVACEVFHKM-TER 221
Query: 318 NVIIWGSFLAACKEHKQFDMAERVIKQALR 347
NV+ W + + A +H++ + A + +Q L+
Sbjct: 222 NVVSWTAIIQANAQHRKLNEAFELYEQMLQ 251
>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
Length = 627
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 137/394 (34%), Positives = 229/394 (58%), Gaps = 7/394 (1%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTH-FNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
F M R + + +L +C ++ + +H ++ G + + V +L+ Y
Sbjct: 110 FVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYA 169
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
G A K+FD + R+ V+W +++ G ++ G V EARD F+RMP R+ SW+AMI
Sbjct: 170 ECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDG 229
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ A + L++FREM ++ D+ T+ +V++ C+ LG+ L MG+ ++ +
Sbjct: 230 YVWAARFREALEMFREM-QYSNVSADEFTMVSVITACAQLGA--LEMGEWVRVYMSRQGI 286
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+++ + L+DMY+KCG ++ AL VF+ M R+ +WTA+I G A GY E+A+ +F
Sbjct: 287 KMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHR 346
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M P+E+TF GVLTAC H GLVD+GR++F + E Y++ P + HYGC++DL G+AG
Sbjct: 347 MIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAG 406
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
+ EA + I M + PN IWG+ LAAC+ H ++ E V ++ L + PEN V+ L+
Sbjct: 407 KITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVAERLLEL-DPENS-MVYILL 464
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y +WE R+R ++ + ++K G S+I
Sbjct: 465 SNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLI 498
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/346 (22%), Positives = 143/346 (41%), Gaps = 72/346 (20%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHF----NNLTVIHHLHSHILKLGFISHVYVATSLL- 58
+++M + D+++ +LK+ + +H+H+++LG + +VA+SL+
Sbjct: 7 YARMLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHVASSLVA 66
Query: 59 HEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
AR L E V WN +I G+++ G E+ F M
Sbjct: 67 AYTAGGDGAAARALVGECD--TPVAWNALISGHNRGGRFGESCGSFVDM----------- 113
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
+ G P +T +VLS C G+ +L+G HG +V
Sbjct: 114 ---------------------ARAGAAPTPVTYVSVLSACGK-GTRDVLLGMQVHGRVVG 151
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE----- 233
+ + ++ LVDMYA+C + A VF+ M+ R+V+SWT+L+ G A G +
Sbjct: 152 SGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDL 211
Query: 234 --------------------------DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
+AL +F MQ + V +E T V+TAC G +
Sbjct: 212 FDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGAL 271
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
+ G ++ ++ ++ ++D++ K G +E A +V + M
Sbjct: 272 EMG-EWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGM 316
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 102/252 (40%), Gaps = 22/252 (8%)
Query: 143 GLTPDQMTIGAVLSGCSHL--GSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGF 200
G PD T A+L + GS ++ H +V+ N +A+ LV Y G
Sbjct: 14 GGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHVASSLVAAYTAGGD 73
Query: 201 LKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260
A + + E ++W ALI G G ++ F M G P +T+ VL+A
Sbjct: 74 GAAARAL--VGECDTPVAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSA 131
Query: 261 C------VHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR 314
C V G+ GR + P ++ +VD++ + + A++V M+
Sbjct: 132 CGKGTRDVLLGMQVHGRVVGSGV------LPDLRVENALVDMYAECADMGSAWKVFDGMQ 185
Query: 315 LEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGA 374
+ +V+ W S L+ Q D A + RM PE D +T + D Y ++ A
Sbjct: 186 VR-SVVSWTSLLSGLARLGQVDEARDLFD---RM--PERDTVSWTAMIDGYVWAARFREA 239
Query: 375 ERVRKLMLNQNV 386
+ + M NV
Sbjct: 240 LEMFREMQYSNV 251
>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 1058
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 140/397 (35%), Positives = 237/397 (59%), Gaps = 9/397 (2%)
Query: 1 MQLFSQMHRQ-SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
++L ++HR SVPSDS S L +C + ++ + +HS +K G + YV L+
Sbjct: 540 LELLIELHRSGSVPSDS-SFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLIS 598
Query: 60 EYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y + +F + ++ V+WN++I G S++ + +AR FE+MP R+V SW+A+
Sbjct: 599 MYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAI 658
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I+AY+ AG + L LF +M++ G+ P+Q+T+ ++LS C +LG++ L G+ H I K
Sbjct: 659 ISAYVQAGHGEVALDLFLDMLA-RGIKPNQLTVTSLLSACGNLGAIKL--GEQFHALIFK 715
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
++ + L+ MY KCG+ + VFE M E ++I+W A++ G A G ++A+ +
Sbjct: 716 LGFDTFLFVGNSLITMYFKCGY-EDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKI 774
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
FE M+ G+ P++M+F GVL AC H GLVDEG +F + ++Y + P + HY CMVDL G
Sbjct: 775 FEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLG 834
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG+L EA +I M ++P+ +IW + L AC+ H+ ++ +RV ++ +M KP++ +
Sbjct: 835 RAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPKS--ATY 892
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ +L+ W+ +RKLM +Q + K G S I
Sbjct: 893 VLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWI 929
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 97/326 (29%), Positives = 162/326 (49%), Gaps = 38/326 (11%)
Query: 51 VYVATSLLHEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL 109
V T+++ Y V AR +FDE+ N V WN +I GY+++G + EA+D F++MP+
Sbjct: 458 VATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPV 517
Query: 110 RNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMG 169
+N ASW+AMIA ++ L+L E+ G P + + LS C+++G V + G
Sbjct: 518 KNSASWAAMIAGFVQNEESREALELLIEL-HRSGSVPSDSSFTSALSACANIGDVEI--G 574
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYAKCG------------------------------ 199
+ H +K + N + L+ MYAKCG
Sbjct: 575 RVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSEN 634
Query: 200 -FLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL 258
L A +VFE M +R+V+SWTA+I G+ E AL LF M A G+KPN++T T +L
Sbjct: 635 YMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLL 694
Query: 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPN 318
+AC + G + G ++ +I + + + ++ ++ K G+ E+ + V M E +
Sbjct: 695 SACGNLGAIKLGEQFHALI-FKLGFDTFLFVGNSLITMYFKCGY-EDGFCVFEEMP-EHD 751
Query: 319 VIIWGSFLAACKEHKQFDMAERVIKQ 344
+I W + L C ++ A ++ +Q
Sbjct: 752 LITWNAVLVGCAQNGLGKEAIKIFEQ 777
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 135/266 (50%), Gaps = 13/266 (4%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
ARKLFDE+PE+N +WN+++ GY + EAR+ F++MP RN SW MI+ Y++ Y
Sbjct: 283 ARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDY 342
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+F +M PDQ VLS + L + L+ S +K +E + +
Sbjct: 343 WEAWDVFVKMCRTVA-RPDQSIFVVVLSAITGLDDLELI--GSLRPIAIKTGYEGDVVVG 399
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
+ +++ Y + G L A+ FE M ERN SWT +I A G +DA+ L+E + V
Sbjct: 400 SAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVA 459
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
T T ++TA G + + R F I L P + + ++ + + G L+EA +
Sbjct: 460 ----TKTAMMTAYAQVGRIQKARLIFDEI-----LNPNVVAWNAIIAGYTQNGMLKEAKD 510
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQ 334
+ + M ++ N W + +A ++++
Sbjct: 511 LFQKMPVK-NSASWAAMIAGFVQNEE 535
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 145/319 (45%), Gaps = 20/319 (6%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR++F+E+ +R+ V+WN+MI GYS++G V EAR F+ +N+ +W+ ++ Y G
Sbjct: 190 ARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLTGYAKEGRI 249
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ ++F M ++ + M G V +G L + L + KN N
Sbjct: 250 EEAREVFESMTERNVVSWNAMISGYVQNG--DLKNARKLFDEMPE----KNVASWNS--- 300
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
+V Y C + A +F+ M ERN +SW +I G H +A +F M T +
Sbjct: 301 --VVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVAR 358
Query: 249 PNEMTFTGVLTACVHTGLVD-EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
P++ F VL+A TGL D E + I + E + +++ + + G L+ A
Sbjct: 359 PDQSIFVVVLSAI--TGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAM 416
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM 367
TM E N W + +AA + + D A ++ ++ PE T + Y
Sbjct: 417 HFFETMP-ERNEYSWTTMIAAFAQCGRLDDAIQLYERV-----PEQTVATKTAMMTAYAQ 470
Query: 368 NEKWEGAERVRKLMLNQNV 386
+ + A + +LN NV
Sbjct: 471 VGRIQKARLIFDEILNPNV 489
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 84/207 (40%), Gaps = 50/207 (24%)
Query: 75 ELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKL 134
E P+ + NT I+ + G V EAR F M R+V SW++MI Y G D L
Sbjct: 165 ETPQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLL 224
Query: 135 FREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN--EWELNEQIATILV 192
F F+ KN W TIL+
Sbjct: 225 F-------------------------------------DAFVGKNIRTW-------TILL 240
Query: 193 DMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEM 252
YAK G ++ A VFE M ERNV+SW A+I G G ++A LF+ M + N
Sbjct: 241 TGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMP----EKNVA 296
Query: 253 TFTGVLTACVHTGLVDEGRKYFKMIDE 279
++ V+T H + E R+ F + E
Sbjct: 297 SWNSVVTGYCHCYRMSEARELFDQMPE 323
>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
Length = 582
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 135/360 (37%), Positives = 216/360 (60%), Gaps = 7/360 (1%)
Query: 38 LHSHILKLGFISHVYVATSLL--HEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSG 95
+H+H +KLG V V+ +L+ H + S L +A T+NT+I Y+++G
Sbjct: 98 VHTHAVKLGLDRFVLVSNALIRVHAGFLGSLADGLLLLRTAAAVDASTFNTLITAYARAG 157
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155
+ +AR F+ MP RN SWSAM+ Y+ AG L++F M E + PD + VL
Sbjct: 158 RLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARM-QAEDVRPDDTVLVGVL 216
Query: 156 SGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERN 215
+ C+ G+ L GK HG++ + ++N T LVDMY+KCG ++ A+ VFE M+ +N
Sbjct: 217 AACAQHGA--LEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKN 274
Query: 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275
V++WT +I G A G +A+ LF M+++G++P+++ F GVL AC H GLVD+GR+ F
Sbjct: 275 VLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFD 334
Query: 276 MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQF 335
+ +Y ++P+I+HYGCMVDL + GFL EA E+I+ M +EP+ +IWG+ +A C+ HK
Sbjct: 335 SMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAGCRFHKNV 394
Query: 336 DMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ AE V K + +++P+ G + L+ ++Y + + A +R LM + V K G S +
Sbjct: 395 EFAEYVAKHWI-LLEPDKSGA-YVLLSNIYAASGRHASAREIRHLMREKGVDKTPGCSTV 452
>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1026
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 138/396 (34%), Positives = 234/396 (59%), Gaps = 6/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++++ +M + V + +++ ++ SC+ +L + H +I + G + + +L+
Sbjct: 244 IKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDM 303
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
YV AR LFD + ++ V+W TM+ GY++ G + AR+ ++P ++V W+A+I
Sbjct: 304 YVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAII 363
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ + A L LF EM + PD++T+ LS CS LG+ L +G H +I ++
Sbjct: 364 SGCVQAKQGKEALALFHEM-QIRTIEPDKVTMVNCLSACSQLGA--LDVGIWIHHYIERH 420
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ ++ + T LVDMYAKCG + AL VFE + +RN ++WTA+ICG A G ++DALS F
Sbjct: 421 KLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYF 480
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M G+ P+E+TF GVL+AC H GLV+EGRKYF + ++++ P+++HY CMVDL G+
Sbjct: 481 SKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLGR 540
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG LEEA E+++ M + + + G+ AC+ + + ER + L + P+ D G +
Sbjct: 541 AGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLE-IDPQ-DSGNYV 598
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ +Y+ + W+ A RKLM ++ V K G S++
Sbjct: 599 LLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLV 634
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 141/325 (43%), Gaps = 57/325 (17%)
Query: 39 HSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVC 98
+S L LG + HV FGF +F N I G +
Sbjct: 172 YSSCLGLGVLGHVL------------KFGFECDIF---------VHNASITMLLSCGELS 210
Query: 99 EARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGC 158
A D F + +R++ +W++MI + G +K+++EM E + P+++T+ ++S C
Sbjct: 211 VAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEM-EAEKVRPNEITMIGMISSC 269
Query: 159 SHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVIS 218
S + + L GK H +I ++ E + L+DMY KCG L A ++F+ M ++ ++S
Sbjct: 270 SQVQDLNL--GKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVS 327
Query: 219 WTALICGSAHRGY-------------------------------SEDALSLFEMMQATGV 247
WT ++ G A G+ ++AL+LF MQ +
Sbjct: 328 WTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTI 387
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
+P+++T L+AC G +D G I E + L + +VD++ K G + A
Sbjct: 388 EPDKVTMVNCLSACSQLGALDVGIWIHHYI-ERHKLSIDVALGTALVDMYAKCGNIARAL 446
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEH 332
+V + + N + W + + H
Sbjct: 447 QVFEEIP-QRNCLTWTAVICGLALH 470
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 134/287 (46%), Gaps = 40/287 (13%)
Query: 102 DFFERMPLR----NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSG 157
D+ R+ R NV SW+A I Y+ +G + G L++ M+ L PD T +L G
Sbjct: 108 DYCTRILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKG 167
Query: 158 CSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVI 217
C G +G G ++K +E + + + M CG L A VF R+++
Sbjct: 168 CC--GQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLV 225
Query: 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI 277
+W ++I G RG + +A+ +++ M+A V+PNE+T G++++C ++ G+++ I
Sbjct: 226 TWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYI 285
Query: 278 DEEYDLEPRIQHYGCMVDLFGKA-------------------------------GFLEEA 306
+E+ LE I ++D++ K GFL+ A
Sbjct: 286 -KEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVA 344
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ-ALRMVKPE 352
E++ + E +V+ W + ++ C + KQ A + + +R ++P+
Sbjct: 345 REILYKIP-EKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPD 390
>gi|255570475|ref|XP_002526196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534500|gb|EEF36200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 491
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 142/398 (35%), Positives = 230/398 (57%), Gaps = 10/398 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF M + ++++ + K+CT NNL + H +KLG+ + +V L+H
Sbjct: 96 IMLFKNMLYSNFLPNNYTYSFLFKACTDLNNLYLGLACHCQSIKLGWEFYDFVQNGLVHM 155
Query: 61 YVVTSFGF---ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
+ + FG ARKLFD R+ +TW +I GY ++G V R+ F++MP RN SWSA
Sbjct: 156 FAI--FGCMDSARKLFDLSSNRDVITWTALINGYVRAGQVLIGRELFDKMPERNSVSWSA 213
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MI Y+ G ++ L+LF M+ + G P+ I ++ C+ LG+ L G+ H +I
Sbjct: 214 MITGYVRVGFFEEALELFNAMLIS-GFWPNHAGIVCAINACASLGA--LDQGRWIHCYIK 270
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
+N +L+ + L+DMYAKCG ++ A +F + R+V +T LI G A+ G S A+
Sbjct: 271 RNRMDLDRVMGAALIDMYAKCGCIEIACSIFGELRNRDVHVYTCLISGLANHGQSATAVE 330
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LFE M + GV PNE+TF VL AC GLVD+G + F+ + + Y EP++QHYGC+VDL
Sbjct: 331 LFERMHSEGVVPNEVTFVSVLNACSRMGLVDKGLRIFENMSKIYGDEPQVQHYGCLVDLL 390
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
G+AG LEEA ++++ M ++P+ + G+ L A + + ++ E ++ ++ + GV
Sbjct: 391 GRAGKLEEAKKLVKEMPMKPDSYVLGALLNASRVYGDVELGEETVESLAQL--SLDHSGV 448
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++ ++Y KW+ RVR+ M ++ VRK G S+I
Sbjct: 449 HVVLSNMYASANKWDEVARVRRGMGDKKVRKVPGCSLI 486
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 79/350 (22%), Positives = 136/350 (38%), Gaps = 74/350 (21%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGF----ARKLFDE 75
L +L C ++ I + +H+ G + Y A ++ ++S F A +LF
Sbjct: 14 LFLLDKC---RTISQIKQIQTHLTVSGTLKDPYAAAKIISFCALSSNQFSLSHAYRLFLG 70
Query: 76 LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF 135
L R+ WNT+I+ +++ E R + LF
Sbjct: 71 LRHRSTFIWNTVIRAFAEKN---EPR----------------------------KAIMLF 99
Query: 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY 195
+ M+ + L P+ T + C+ L + L +G + H +K WE + + LV M+
Sbjct: 100 KNMLYSNFL-PNNYTYSFLFKACTDLNN--LYLGLACHCQSIKLGWEFYDFVQNGLVHMF 156
Query: 196 AKCGFLKYALMVFEL-------------------------------MEERNVISWTALIC 224
A G + A +F+L M ERN +SW+A+I
Sbjct: 157 AIFGCMDSARKLFDLSSNRDVITWTALINGYVRAGQVLIGRELFDKMPERNSVSWSAMIT 216
Query: 225 GSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLE 284
G G+ E+AL LF M +G PN + AC G +D+GR I
Sbjct: 217 GYVRVGFFEEALELFNAMLISGFWPNHAGIVCAINACASLGALDQGRWIHCYIKRNRMDL 276
Query: 285 PRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
R+ ++D++ K G +E A + +R +V ++ ++ H Q
Sbjct: 277 DRVMG-AALIDMYAKCGCIEIACSIFGELR-NRDVHVYTCLISGLANHGQ 324
>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 145/431 (33%), Positives = 232/431 (53%), Gaps = 43/431 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F M + D ++ +LK+C+ +NL V +H I+K+G +++++ +L+
Sbjct: 122 LSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAM 181
Query: 61 Y-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGN------VCEARD----------- 102
Y ARK+ D++P R+ V+WN+M+ GY++SG +C+ D
Sbjct: 182 YGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTM 241
Query: 103 --------------------FFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNE 142
FERM +N+ SW+ MIA Y+N + + LF +M
Sbjct: 242 ASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQM-EEC 300
Query: 143 GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLK 202
G+ PD +TI ++L C L + L +G+ H +I K N + L+DMYAKCG L+
Sbjct: 301 GMKPDAVTIASLLPACGDLSA--LFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLE 358
Query: 203 YALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACV 262
A VF+ M R+V+SWT+++ G DA++LF M +G P+ + F VL+AC
Sbjct: 359 EARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACS 418
Query: 263 HTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
HTGL+D+GR YF+M+ E+Y + PRI+H+ CMVDLFG+AG +EEAY I+ M +EPN +W
Sbjct: 419 HTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVW 478
Query: 323 GSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382
G+ L+AC+ H + D+ V L + P+ G + L+ ++Y W+ VR M
Sbjct: 479 GALLSACRVHSKMDIG-LVAADLLFQLAPKQ-SGYYVLLSNIYAKAGMWKDVMNVRYAMK 536
Query: 383 NQNVRKARGSS 393
++K G S
Sbjct: 537 KIGIKKVPGIS 547
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 119/260 (45%), Gaps = 9/260 (3%)
Query: 87 MIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
+++ YS G AR F+R +NV ++ MI +Y+N Y L +F+ M+S P
Sbjct: 77 LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSC-AFNP 135
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
D T VL CS L + L +G H IVK + N I LV MY KCG L+ A
Sbjct: 136 DHYTFPCVLKACSGLDN--LRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARK 193
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
V + M R+V+SW +++ G A G +DAL + + M + + + T + +T L
Sbjct: 194 VLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSL 253
Query: 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR---LEPNVIIWG 323
E +Y + E + I + M+ ++ EA + M ++P+ +
Sbjct: 254 --ENVQYIHNMFERMTKKNLIS-WNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIA 310
Query: 324 SFLAACKEHKQFDMAERVIK 343
S L AC + + R+ K
Sbjct: 311 SLLPACGDLSALFLGRRLHK 330
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 7/175 (4%)
Query: 173 HGFIVKNE-WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGY 231
H IV NE ++ +A L+ Y+ G A +F+ E+NV+ + +I +
Sbjct: 58 HSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNL 117
Query: 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE--EYDLEPRIQH 289
+ALS+F++M + P+ TF VL AC +GL D R ++ D + L+ +
Sbjct: 118 YVEALSIFQVMLSCAFNPDHYTFPCVLKAC--SGL-DNLRVGLQVHDAIVKVGLDTNLFI 174
Query: 290 YGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
+V ++GK G L EA +V+ M +V+ W S +A + QFD A + K+
Sbjct: 175 GNALVAMYGKCGCLREARKVLDQMPYR-DVVSWNSMVAGYAQSGQFDDALEICKE 228
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 158/464 (34%), Positives = 240/464 (51%), Gaps = 75/464 (16%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
++ QM + + D+++I +LK+C + +H +K+G S VYV+ +L+ Y
Sbjct: 112 VYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYA 171
Query: 63 VTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARD-FFE--------------- 105
V ARK+FD P+R+ V+W TMI+GY K G E FFE
Sbjct: 172 VCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVI 231
Query: 106 ------------------RMPLRN------VASWSAMIAAYLNAGAYDPGLKLFREM--- 138
R +RN V +A++ YL G + K+F+EM
Sbjct: 232 VLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVK 291
Query: 139 ---------------------------ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKS 171
+ G+ PD +T+ AVL+ C++LG L +GK
Sbjct: 292 NVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGV--LELGKW 349
Query: 172 AHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGY 231
H ++ +N+ + I LVDMYAKCG + A VF+ M ++V S+TA+I G A G
Sbjct: 350 VHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQ 409
Query: 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG 291
AL LF M G++P+E+TF GVLTAC H GLV+EGRKYF+ + Y+L P+++HYG
Sbjct: 410 GGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYG 469
Query: 292 CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351
CMVDL G+AG + EA E IR M +EP+ + G+ L ACK H + ++ E V+K+ + ++P
Sbjct: 470 CMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKK-IEKIEP 528
Query: 352 ENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
DG + L+ ++Y+ +W A ++RK M +N+ K G S I
Sbjct: 529 RKDGA-YVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSI 571
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 160/353 (45%), Gaps = 47/353 (13%)
Query: 11 SVPSD----SFSILHILKSCTHFNNLTVIHHLHSHILKL--GFISHVYVAT---SLLHEY 61
++P D S L L++C L +H+ I+K + + ++T +L +
Sbjct: 13 TLPHDFNPHKLSFLSTLQTCKSIKGL---KQIHASIIKTMPSPDAQLTISTRLSALCAQS 69
Query: 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+ +A L +L N +N +I+G + S N D E
Sbjct: 70 LPIDPRYALSLLAQLRTPNLPLYNAIIRGLATSNN-----DSIE---------------- 108
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
GL ++++M+S +G+ PD TI VL C+ S + G+ HG +K
Sbjct: 109 ---------GLVVYKQMLS-KGIVPDNYTIPFVLKACAE--SRAVREGEEVHGQAIKMGL 156
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ ++ L+ MYA C ++ A VF+ +R+++SWT +I G G++ + + LF
Sbjct: 157 ASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFE 216
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M ++ + MT VL++C G + GRK + I ++ + +VD++ K G
Sbjct: 217 MCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCG 276
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-VKPEN 353
A +V + M ++ NV+ W S ++ + QF + + ++ R+ VKP++
Sbjct: 277 DANFARKVFQEMPVK-NVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDD 328
>gi|326489701|dbj|BAK01831.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 484
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 137/350 (39%), Positives = 210/350 (60%), Gaps = 6/350 (1%)
Query: 47 FISHVYVATSLLHEYVVTSFG-FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFE 105
F SH+ + T L Y+ + A +LF + R+ VT+NTMI G ++G V AR+ F+
Sbjct: 102 FPSHLLLCTCLARFYLASRLPHLALQLFGSMTVRSLVTYNTMITGLMRNGLVAAAREVFD 161
Query: 106 RMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVG 165
MP + SW+A+I + G +D + F M+ +G+ PD +T+ A +S C+ +G++G
Sbjct: 162 GMPEPDKVSWTALIDGCVKNGRHDEAIDCFHAMLL-DGVEPDYVTLVAAISACAEVGALG 220
Query: 166 LLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICG 225
L G H + + E N +IA L+DMYA+CG +++A VF+ M R V+SW ++I G
Sbjct: 221 L--GMWVHRLVTRERLEGNIRIANSLIDMYARCGQVEFARQVFDSMRNRTVVSWNSMIVG 278
Query: 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP 285
A G DA+ FE M+ G +P+ +TFTGVLTAC H GL DEG +Y+K + E+ +
Sbjct: 279 FAANGRCTDAIEHFEAMRRKGFRPDAVTFTGVLTACSHAGLTDEGLRYYKAMRAEHGITA 338
Query: 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQA 345
R++HYGC+VDL G+AG L EA V+ TM + PN ++ G+ LA C+ H DMAE++++
Sbjct: 339 RMEHYGCVVDLLGRAGRLGEAMSVVATMPMRPNEVVLGALLAGCRMHGDVDMAEQLMQHL 398
Query: 346 LRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L P D + L+ ++Y KW+GA +VR LM + V+K G S +
Sbjct: 399 LEQ-DPGGDSN-YVLLSNIYAATGKWDGAGKVRGLMKARGVKKRPGRSAV 446
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 102/254 (40%), Gaps = 45/254 (17%)
Query: 111 NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL-TPDQMTIGAVLSGCSHLGSVGL--- 166
+V SW+A IA G M+S+ P+ +T+ VLS C+ S L
Sbjct: 30 DVVSWTAAIARPAREGDLPATAAALSAMLSSPAAPAPNDVTLLTVLSACAGAPSSPLARP 89
Query: 167 ---------------------------LMGKSAH-------GFIVKNEWELNEQIATILV 192
L + H V++ N I ++
Sbjct: 90 LALSLHALAAKLFPSHLLLCTCLARFYLASRLPHLALQLFGSMTVRSLVTYNTMITGLM- 148
Query: 193 DMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEM 252
+ G + A VF+ M E + +SWTALI G G ++A+ F M GV+P+ +
Sbjct: 149 ----RNGLVAAAREVFDGMPEPDKVSWTALIDGCVKNGRHDEAIDCFHAMLLDGVEPDYV 204
Query: 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312
T ++AC G + G +++ E LE I+ ++D++ + G +E A +V +
Sbjct: 205 TLVAAISACAEVGALGLGMWVHRLVTRER-LEGNIRIANSLIDMYARCGQVEFARQVFDS 263
Query: 313 MRLEPNVIIWGSFL 326
MR V+ W S +
Sbjct: 264 MR-NRTVVSWNSMI 276
>gi|326530063|dbj|BAK08311.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 490
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 145/366 (39%), Positives = 227/366 (62%), Gaps = 12/366 (3%)
Query: 38 LHSHILKLGFIS-HVYVATSLLHEYVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSG 95
LH+H L+LG + +YVA SL+H Y + AR+LFDE+P N V+WN ++ GY+K
Sbjct: 82 LHAHPLRLGLLPWDLYVANSLVHMYAACALPDLARRLFDEIPRPNLVSWNALLDGYAKCR 141
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI---SNEGLTPDQMTIG 152
++ AR F RMP R+V SWSAMI + G + L LF M + G+ + +T+
Sbjct: 142 DLLSARCVFNRMPQRDVVSWSAMIDGCVKCGEHREALALFEMMEAAGAGNGVRANDVTMV 201
Query: 153 AVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME 212
+VL C+HLG +G G+ H ++ ++ + LN ++AT LVDMYAKCG + AL VF +
Sbjct: 202 SVLGACAHLGDLG--RGRQMHRYLQEHGFLLNLRLATSLVDMYAKCGAISEALEVFRAVP 259
Query: 213 --ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
+V+ W A+I G A G S +++ +F+ MQ +GV P+E+T+ +L+ACVH GLV E
Sbjct: 260 VTTTDVLIWNAVIGGLAVHGLSMESVEIFQEMQNSGVVPDEITYLVLLSACVHGGLVGEA 319
Query: 271 RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330
+ F+ + E L P ++HY C+VD+ G+AG LEEAY V+++M +EPNV + G+ L AC
Sbjct: 320 WRLFRSL-EVQGLRPHVEHYACLVDVLGRAGHLEEAYGVVKSMPMEPNVSVLGALLNACH 378
Query: 331 EHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKAR 390
H ++ E V +Q +++ +P++DG L ++Y + +W+ A++ RK+M + V+K
Sbjct: 379 LHGWVELGEVVGRQLVQL-QPDHDGRYIGL-SNIYAIARRWQEAKKARKVMEERGVKKIP 436
Query: 391 GSSVIS 396
G S I
Sbjct: 437 GFSEID 442
>gi|242041125|ref|XP_002467957.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
gi|241921811|gb|EER94955.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
Length = 650
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 143/399 (35%), Positives = 235/399 (58%), Gaps = 8/399 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +FS M + P D ++ ++ +C + H +++ G S V V +L+H
Sbjct: 254 LAVFSDMREEGWPVDEAVMVSVVAACAKSEVIQNGEVCHGLVVRAGLGSRVNVQNALIHM 313
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y AR+LFD + +WN+MI GY K+G V +A+ F MP ++ SWSAMI
Sbjct: 314 YSSCLDVVAARRLFDSSESLDHFSWNSMISGYLKNGRVEDAKALFNVMPDKDNVSWSAMI 373
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A + L +F M ++E + PD++T+ +V+S C++L L GK H +I +
Sbjct: 374 AGCVQNNQSSEALTVFDNMRAHE-IKPDEVTLVSVISACTNL--CALEQGKLVHEYIRQY 430
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
++ + + T L+DMY KCG ++ AL VF+++EE+ W A+I G A G +L +F
Sbjct: 431 QYNITIVLGTSLIDMYMKCGCMEAALEVFDMVEEKGTPCWNAVIVGLAMNGLVTRSLDMF 490
Query: 240 EMMQATGVK-PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
M+ +G+ P+E+TFTGVL+AC H GLV+EGR++FK++ +Y + P I+HYGCMVDL G
Sbjct: 491 SEMETSGIAVPSEITFTGVLSACRHGGLVEEGRQFFKLMQNKYQIIPNIRHYGCMVDLLG 550
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG++ EA ++I++M + P+V WG+ L AC +H ++ ERV K+ +++ P +D G
Sbjct: 551 RAGYVREAEDLIQSMPMSPDVPAWGALLGACWKHSDSEVGERVGKKLVKL-DPHHD-GFQ 608
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
T++ ++Y W+ + +R M Q+V K G SV+ S
Sbjct: 609 TMLSNIYASEGMWQCVKDLRGSM-KQHVAKVAGCSVVES 646
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/353 (25%), Positives = 159/353 (45%), Gaps = 68/353 (19%)
Query: 37 HLHSHILKLGFISHVYVATSLLHEYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSG 95
+HSH +K GF ++Y+ +L+H Y AR++FD P +AV+WNT++ Y + G
Sbjct: 127 QVHSHAVKHGFGDNLYLRNALMHMYSACGCVAGARRVFDAGPVWDAVSWNTILATYVRDG 186
Query: 96 NVCEARDFFERMPLRNVA-------------------------------SWSAMIAAYLN 124
+V +A F RMP R+ A +W+AMI+ +
Sbjct: 187 DVEQAVGVFARMPERSAAAVSSMVALFARTGMVEEARGVFDGAEHRDAFTWTAMISCFER 246
Query: 125 AGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN 184
+ L +F +M EG D+ + +V++ C+ S + G+ HG +V+
Sbjct: 247 NDLFVEALAVFSDM-REEGWPVDEAVMVSVVAACAK--SEVIQNGEVCHGLVVRAGLGSR 303
Query: 185 EQIATILVDMYAKC--------------------------GFLKY-----ALMVFELMEE 213
+ L+ MY+ C G+LK A +F +M +
Sbjct: 304 VNVQNALIHMYSSCLDVVAARRLFDSSESLDHFSWNSMISGYLKNGRVEDAKALFNVMPD 363
Query: 214 RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKY 273
++ +SW+A+I G S +AL++F+ M+A +KP+E+T V++AC + +++G+
Sbjct: 364 KDNVSWSAMIAGCVQNNQSSEALTVFDNMRAHEIKPDEVTLVSVISACTNLCALEQGKLV 423
Query: 274 FKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
+ I +Y I ++D++ K G +E A EV M E W + +
Sbjct: 424 HEYI-RQYQYNITIVLGTSLIDMYMKCGCMEAALEVF-DMVEEKGTPCWNAVI 474
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 68/315 (21%), Positives = 115/315 (36%), Gaps = 61/315 (19%)
Query: 38 LHSHILKLGFISHVYVATSLLHEYVVTSFGFAR----------KLFDELPERNAVTWNTM 87
+H+ L G ++ Y A+ LL TS AR +LF + NA T NT+
Sbjct: 23 IHAQFLASGLLADAYAASRLL--LFTTSATAARLLPQPLHHSLQLFRLVRSPNAFTCNTL 80
Query: 88 IKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD 147
I+ + G +P +++M AA PD
Sbjct: 81 IRAALRQG-----------LPHLCFPLYASMPAA------------------------PD 105
Query: 148 QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMV 207
T + + C+ G G+ H VK+ + N + L+ MY+ CG + A V
Sbjct: 106 TYTHPLLAAACAARGDA--REGRQVHSHAVKHGFGDNLYLRNALMHMYSACGCVAGARRV 163
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
F+ + +SW ++ G E A+ +F M + + + ++ TG+V
Sbjct: 164 FDAGPVWDAVSWNTILATYVRDGDVEQAVGVFARMP----ERSAAAVSSMVALFARTGMV 219
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEP---NVIIWGS 324
+E R F + + M+ F + EA V MR E + + S
Sbjct: 220 EEARGVFDGAEHRDAFT-----WTAMISCFERNDLFVEALAVFSDMREEGWPVDEAVMVS 274
Query: 325 FLAACKEHKQFDMAE 339
+AAC + + E
Sbjct: 275 VVAACAKSEVIQNGE 289
>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Glycine max]
Length = 638
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 146/411 (35%), Positives = 230/411 (55%), Gaps = 22/411 (5%)
Query: 3 LFSQM-HRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+F QM +V + F+ +LK+C L +H +LK G + +V T+LL Y
Sbjct: 103 VFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMY 162
Query: 62 VVT-SFGFARKLF---------------DEL-PERNAVTWNTMIKGYSKSGNVCEARDFF 104
V+ S A LF DE E N V N M+ GY++ GN+ AR+ F
Sbjct: 163 VMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNVVLCNVMVDGYARVGNLKAARELF 222
Query: 105 ERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV 164
+RM R+V SW+ MI+ Y G Y +++F M+ + P+++T+ +VL S LG +
Sbjct: 223 DRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVL 282
Query: 165 GLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALIC 224
L GK H + KN+ +++ + + LVDMYAKCG ++ A+ VFE + + NVI+W A+I
Sbjct: 283 EL--GKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIG 340
Query: 225 GSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLE 284
G A G + D + M+ G+ P+++T+ +L+AC H GLVDEGR +F + L+
Sbjct: 341 GLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLK 400
Query: 285 PRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
P+I+HYGCMVDL G+AG+LEEA E+I M ++P+ +IW + L A K HK + R +
Sbjct: 401 PKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKMHKNIKIGMRAAEV 460
Query: 345 ALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++M +D G + + ++Y + W+G VR +M + ++RK G S I
Sbjct: 461 LMQMAP--HDSGAYVALSNMYASSGNWDGVAAVRLMMKDMDIRKDPGCSWI 509
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 90/361 (24%), Positives = 155/361 (42%), Gaps = 88/361 (24%)
Query: 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSF---GFARKLFDELPER 79
+K+C L +H+ ++K G +AT +L + F G+A +FD+LPER
Sbjct: 22 IKACKSMRELK---QVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPER 78
Query: 80 NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI 139
N WNT+I+ +++ + +L+A L +F +M+
Sbjct: 79 NCFAWNTVIRALAETQD------------------------RHLDA------LLVFCQML 108
Query: 140 SNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK-----NEW------------- 181
S + P+Q T +VL C+ + L GK HG ++K +E+
Sbjct: 109 SEATVEPNQFTFPSVLKACAVMAR--LAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCG 166
Query: 182 -----------------------------ELNEQIATILVDMYAKCGFLKYALMVFELME 212
E N + ++VD YA+ G LK A +F+ M
Sbjct: 167 SMEDANVLFYRNVEGVDDVRNLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMA 226
Query: 213 ERNVISWTALICGSAHRGYSEDALSLF-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGR 271
+R+V+SW +I G A G+ ++A+ +F MMQ V PN +T VL A G+++ G
Sbjct: 227 QRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELG- 285
Query: 272 KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKE 331
K+ + E+ + +VD++ K G +E+A +V + + NVI W + +
Sbjct: 286 KWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLP-QNNVITWNAVIGGLAM 344
Query: 332 H 332
H
Sbjct: 345 H 345
>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 143/399 (35%), Positives = 230/399 (57%), Gaps = 8/399 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++ +++MH + D+F++ +LKSC + + + +H L++G YV SL+
Sbjct: 92 LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDM 151
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
YV G ARKLFD++ R+ +WN +I GY K G + A D FERM RN+ SW+AMI
Sbjct: 152 YVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMI 211
Query: 120 AAYLNAGAYDPGLKLFREMISNEG-LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
+ Y G + L LF EM+ + + P+ +TI +VL C+ S L G+ H F
Sbjct: 212 SGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQ--SAALERGRRIHDFANG 269
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--RNVISWTALICGSAHRGYSEDAL 236
LN + T L MYAKC L A F+++ + +N+I+W +I A G +A+
Sbjct: 270 IGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAV 329
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
S+FE M GV+P+ +TF G+L+ C H+GL+D G +F + + +EPR++HY C+VDL
Sbjct: 330 SIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDL 389
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
G+AG L EA E+I M ++ +WG+ LAAC+ H+ ++AE ++ L +++P+N G
Sbjct: 390 LGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARR-LFVLEPDNSGN 448
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ +LY WE +++R L+ Q ++K+ G S I
Sbjct: 449 -YVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWI 486
>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 609
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 143/394 (36%), Positives = 231/394 (58%), Gaps = 8/394 (2%)
Query: 5 SQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT 64
S + + + + +S K C + + H +KLG ++++V +L+ YV
Sbjct: 91 SLIREERLVPNQYSFAFAFKGCGSGVGVLEGEQVRVHAIKLGLENNLFVTNALIGMYVNL 150
Query: 65 SFGF-ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL 123
F ARK+FD P R+ +WN M+ GY++ G + EAR F+ MP ++V SW+ MI+ L
Sbjct: 151 DFVVDARKVFDWSPNRDMYSWNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCL 210
Query: 124 NAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWEL 183
G + L +F M++ +G++P++ T+ + L+ C++L V L G+ H +I KN ++
Sbjct: 211 QVGYFMEALDIFHNMLA-KGMSPNEYTLASSLAACANL--VALDQGRWMHVYIKKNNIQM 267
Query: 184 NEQIATILVDMYAKCGFLKYALMVFELME--ERNVISWTALICGSAHRGYSEDALSLFEM 241
NE++ L+DMYAKCG L++A +F +R V W A+I G A G S++A+ +FE
Sbjct: 268 NERLLAGLIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQ 327
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M+ V PN++TF +L AC H V+EGR YF+ + Y ++P ++HYGC+VDL G+AG
Sbjct: 328 MKIEKVSPNKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPELEHYGCLVDLLGRAG 387
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L+EA E+I +M L P+V IWG+ L+ACK HK +M ERV K ++ + P N G L+
Sbjct: 388 RLKEAEEIISSMHLTPDVAIWGALLSACKIHKDAEMGERVGK-IVKELDP-NHLGCHVLL 445
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y++ W A +R+ + +K G S I
Sbjct: 446 ANIYSLTGNWNEARTLREKIAESGKKKTPGCSSI 479
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/357 (23%), Positives = 146/357 (40%), Gaps = 70/357 (19%)
Query: 22 ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY--VVTSFGFARKLFDELPER 79
+L SC F I +H+ ++ G I H LL + + +A +FD P+
Sbjct: 7 LLSSCKSFRQ---IKQVHARLITTGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHFPQP 63
Query: 80 NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI 139
+ +NT+IK + A+ + D K FR +I
Sbjct: 64 DLFLYNTIIK-----------------------------VLAFSTTSSADSFTK-FRSLI 93
Query: 140 SNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH-------------------------G 174
E L P+Q + GC VG+L G+
Sbjct: 94 REERLVPNQYSFAFAFKGCG--SGVGVLEGEQVRVHAIKLGLENNLFVTNALIGMYVNLD 151
Query: 175 FIVKN----EWELNEQIAT--ILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAH 228
F+V +W N + + I++ YA+ G + A +F+ M E++V+SWT +I G
Sbjct: 152 FVVDARKVFDWSPNRDMYSWNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQ 211
Query: 229 RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQ 288
GY +AL +F M A G+ PNE T L AC + +D+GR + + ++ +++ +
Sbjct: 212 VGYFMEALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQGR-WMHVYIKKNNIQMNER 270
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRT-MRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
++D++ K G LE A ++ + RL+ V W + + H + A V +Q
Sbjct: 271 LLAGLIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQ 327
>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 622
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 139/394 (35%), Positives = 238/394 (60%), Gaps = 6/394 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
++QM + + D+ + ++K+ + + V HS I++ GF + VYV SL+H Y
Sbjct: 104 FYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYA 163
Query: 63 VTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
F A ++F ++ R+ V+W +M+ GY K G V AR+ F+ MP RN+ +WS MI
Sbjct: 164 NCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMING 223
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y ++ + LF E + EG+ ++ + +V+S C+HLG+ L G+ A+ ++VK+
Sbjct: 224 YAKNNCFEKAIDLF-EFMKREGVVANETVMVSVISSCAHLGA--LEFGERAYEYVVKSHM 280
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+N + T LVDM+ +CG ++ A+ VFE + E + +SW+++I G A G++ A+ F
Sbjct: 281 TVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQ 340
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M + G P ++TFT VL+AC H GLV++G + ++ + +++ +EPR++HYGC+VD+ G+AG
Sbjct: 341 MISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAG 400
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L EA I M ++PN I G+ L ACK +K ++AERV ++ VKPE+ G + L+
Sbjct: 401 KLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIK-VKPEHS-GYYVLL 458
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y +W+ E +R +M + V+K G S+I
Sbjct: 459 SNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLI 492
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/368 (23%), Positives = 155/368 (42%), Gaps = 78/368 (21%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS--------FGFARK 71
L +L+SC+ F++L +I H +L+ IS V+VA+ LL V S G+A
Sbjct: 16 LALLQSCSSFSDLKII---HGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYG 72
Query: 72 LFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPG 131
+F ++ N +N +I+ +S +A F+ +M + W
Sbjct: 73 IFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRI--W---------------- 114
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
PD +T ++ S + V L+G+ H IV+ ++ + + L
Sbjct: 115 --------------PDNITFPFLIKASSEMECV--LVGEQTHSQIVRFGFQNDVYVENSL 158
Query: 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSA----------------HR------ 229
V MYA CGF+ A +F M R+V+SWT+++ G HR
Sbjct: 159 VHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWS 218
Query: 230 ----GYS-----EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE 280
GY+ E A+ LFE M+ GV NE V+++C H G ++ G + ++ + +
Sbjct: 219 IMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKS 278
Query: 281 YDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAER 340
+ + + +VD+F + G +E+A V + E + + W S + H A
Sbjct: 279 H-MTVNLILGTALVDMFWRCGDIEKAIHVFEGLP-ETDSLSWSSIIKGLAVHGHAHKAMH 336
Query: 341 VIKQALRM 348
Q + +
Sbjct: 337 YFSQMISL 344
>gi|297797141|ref|XP_002866455.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp.
lyrata]
gi|297312290|gb|EFH42714.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp.
lyrata]
Length = 1401
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 137/387 (35%), Positives = 222/387 (57%), Gaps = 12/387 (3%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNN--LTVIHHLHSHILKLGFISHVYVATSLLH 59
+ F +M R+SVP D + + K+C N L+++ LH L+ G +S ++ +L+
Sbjct: 515 RFFVEMRRRSVPPDFHTYPFVFKACAAKKNGDLSLVKTLHCQALRFGLLSDLFTLNTLIR 574
Query: 60 EY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y ++ G A +LFDE P+R+ VT+N +I G K+ + AR+ F+ MP R++ SW+++
Sbjct: 575 AYSLMAPIGSALQLFDENPQRDVVTYNVLIDGLVKACEIVRARELFDSMPFRDLVSWNSL 634
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
IA Y + LF EMI GL PD + I + LS C+ G L GK+ H + K
Sbjct: 635 IAGYAQMNQCREAISLFDEMIGL-GLKPDNVAIVSTLSACAQSGD--LEKGKAIHDYTKK 691
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
++ +AT LVD YAKCGF+ A+ +F L ++ + +W A+I G A G E +
Sbjct: 692 KRLFIDSFLATGLVDFYAKCGFIDTAMEIFHLSSDKTLFTWNAMITGLAMHGNGELTVDY 751
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F M ++G+KP+ ++F VL C H+GLV E RK F + YD++ ++HYGCM DL G
Sbjct: 752 FHKMVSSGIKPDGVSFISVLVGCSHSGLVGEARKLFDQMRSLYDVDREMKHYGCMADLLG 811
Query: 299 KAGFLEEAYEVIRTMRLE----PNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
+AG +EEA E+I M + ++ W L C+ H ++AE+ K+ ++ + PE D
Sbjct: 812 RAGLIEEAAEMIEQMPKDGGKREKLLAWSGLLGGCRIHGNIEVAEKAAKR-VKALSPE-D 869
Query: 355 GGVFTLICDLYTMNEKWEGAERVRKLM 381
GGV+ ++ ++Y E+WE +VR+++
Sbjct: 870 GGVYKVMVEMYANAERWEDVVKVREMI 896
>gi|357519199|ref|XP_003629888.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355523910|gb|AET04364.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 515
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 143/398 (35%), Positives = 237/398 (59%), Gaps = 12/398 (3%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+F++M ++ +S + ++K+C ++L + L +KLG S VY +S+++ +
Sbjct: 75 VFTKMLNTNIRPNSHTFTTLVKACVSLSSLEQVFTLS---MKLGNSSDVYFVSSVINAFS 131
Query: 63 V-TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
++ AR++FDE RN V W +++ GY G V EARD F++MPLRN AS+SAM++
Sbjct: 132 KHSAIHLARQVFDECSNRNVVCWTSLVSGYCSCGLVNEARDVFDKMPLRNEASYSAMVSG 191
Query: 122 YLNAGAYDPGLKLFREMISNEG----LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
Y+ G + G++LFRE+ + L + + +VL+ C+ +G+ GK H ++
Sbjct: 192 YVRNGFFSEGVQLFRELKKKDKGCACLKFNGALLVSVLNACTMVGA--FEEGKWIHSYVE 249
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
+N E + ++ T L+D Y KCG++K A VF M ++V +W+A+I G A G ++ AL
Sbjct: 250 ENGLEYDLELGTALIDFYMKCGWVKGAEKVFNKMPVKDVATWSAMILGLAINGNNKMALE 309
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LFE M+ G KPNE+TF GVLTAC H L E + F ++ E+Y++ P I+HYGC+VD+
Sbjct: 310 LFEKMEKVGPKPNEVTFVGVLTACNHKSLFGESARLFGIMSEKYNITPSIEHYGCVVDVL 369
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
++G +++A I +M +EP+ IWGS L C H +++ ++V K + +P++ G
Sbjct: 370 ARSGQVKKALTFINSMHIEPDGAIWGSLLNGCLMHGHYELGQKVGKYLIEF-EPKHSGR- 427
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ ++Y KWEG VRKLM ++ V G S I
Sbjct: 428 YVLLANMYANMGKWEGVSEVRKLMKDRGVMIVSGWSFI 465
>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 689
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 143/399 (35%), Positives = 230/399 (57%), Gaps = 8/399 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++ +++MH + D+F++ +LKSC + + + +H L++G YV SL+
Sbjct: 166 LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDM 225
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
YV G ARKLFD++ R+ +WN +I GY K G + A D FERM RN+ SW+AMI
Sbjct: 226 YVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMI 285
Query: 120 AAYLNAGAYDPGLKLFREMISNEG-LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
+ Y G + L LF EM+ + + P+ +TI +VL C+ S L G+ H F
Sbjct: 286 SGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQ--SAALERGRRIHDFANG 343
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--RNVISWTALICGSAHRGYSEDAL 236
LN + T L MYAKC L A F+++ + +N+I+W +I A G +A+
Sbjct: 344 IGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAV 403
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
S+FE M GV+P+ +TF G+L+ C H+GL+D G +F + + +EPR++HY C+VDL
Sbjct: 404 SIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDL 463
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
G+AG L EA E+I M ++ +WG+ LAAC+ H+ ++AE ++ L +++P+N G
Sbjct: 464 LGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARR-LFVLEPDNSGN 522
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ +LY WE +++R L+ Q ++K+ G S I
Sbjct: 523 -YVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWI 560
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 99/230 (43%), Gaps = 37/230 (16%)
Query: 78 ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
+ NA M+ Y+ SG++ A F+R+ + ++++I AY G
Sbjct: 109 QPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEA 168
Query: 138 MISNE--GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY 195
GL D T+ VL C+ L V MG+ HG ++ E + + L+DMY
Sbjct: 169 YARMHFLGLLGDNFTLPFVLKSCADLSRV--CMGRCVHGQGLRVGLEGDFYVGASLIDMY 226
Query: 196 AKCGFLKYALM-------------------------------VFELMEERNVISWTALIC 224
KCG + A +FE ME RN++SWTA+I
Sbjct: 227 VKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMIS 286
Query: 225 GSAHRGYSEDALSLFEMMQATG--VKPNEMTFTGVLTACVHTGLVDEGRK 272
G G++E AL LF+ M G +KPN +T VL AC + ++ GR+
Sbjct: 287 GYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRR 336
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 78/180 (43%), Gaps = 5/180 (2%)
Query: 168 MGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSA 227
+G+ AH IV + + N +A +V MYA G L A++VF+ ++ + + + ++I
Sbjct: 95 LGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYT 154
Query: 228 HRG---YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLE 284
G L + M G+ + T VL +C V GR LE
Sbjct: 155 RHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQ-GLRVGLE 213
Query: 285 PRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
++D++ K G + +A ++ M + ++ W + +A + + +AE + ++
Sbjct: 214 GDFYVGASLIDMYVKCGVIGDARKLFDKMIVR-DMASWNALIAGYMKEGEIGVAEDLFER 272
>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Brachypodium distachyon]
Length = 886
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 131/394 (33%), Positives = 230/394 (58%), Gaps = 5/394 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF+QM + + D F++ ++ C + ++ + LHS LK G V V+ SL+
Sbjct: 377 VELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISM 436
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + A +F+ + ER+ V+W MI YS+ GN+ +AR+FF+ M RNV +W+AM+
Sbjct: 437 YAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAML 496
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
AY+ GA + GLK++ +M++ + + PD +T + GC+ +G+ L G G VK
Sbjct: 497 GAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKL--GDQIIGHTVKV 554
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
L+ + ++ MY+KCG + A F+ + ++++SW A+I G + G + A+ +F
Sbjct: 555 GLILDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIF 614
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+ + G KP+ +++ VL+ C H+GLV+EG+ YF M+ ++++ P ++H+ CMVDL G+
Sbjct: 615 DDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGR 674
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG L EA +I M ++P +WG+ L+ACK H D+AE K + P + G +
Sbjct: 675 AGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNDLAELAAKHLFDLDSPGSGG--YM 732
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
L+ +Y K + + +VRKLM ++ ++K+ G S
Sbjct: 733 LLAKMYADAGKSDDSAQVRKLMRDKGIKKSPGYS 766
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 102/344 (29%), Positives = 167/344 (48%), Gaps = 47/344 (13%)
Query: 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLF-DELPERN 80
L+SC + LT LHS ++ +G S V++ +LLH Y+ + AR L DE+ E N
Sbjct: 32 LRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEITEPN 91
Query: 81 AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMIS 140
+T N M+ GY+K G++ +A + F RMP R+VASW+ +++ Y +G + L +F M
Sbjct: 92 VITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQ 151
Query: 141 NEGLTPDQMTIGAVLSGCSHLG--SVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198
P+ T G V+ C LG V L + G + K + + + + T LVDM +C
Sbjct: 152 TGDSLPNAFTFGCVMKSCGALGWHEVALQL----LGLLSKFDSQDDPDVQTALVDMLVRC 207
Query: 199 GFLKY-------------------------------ALMVFELMEERNVISWTALICGSA 227
G + + AL +F+ M ER+V+SW +I +
Sbjct: 208 GAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALS 267
Query: 228 HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPR 286
G +AL + M GV+P+ T+T LTAC ++ G++ + ++I ++P
Sbjct: 268 KSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPY 327
Query: 287 IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW----GSFL 326
+ MV+L+ K G +EA V ++R + N + W G FL
Sbjct: 328 VA--SAMVELYAKCGCFKEAKRVFSSLR-DRNSVSWTVLIGGFL 368
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 88/331 (26%), Positives = 159/331 (48%), Gaps = 9/331 (2%)
Query: 1 MQLFSQMHR--QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL 58
+ +F M + S+P ++F+ ++KSC V L + K V T+L+
Sbjct: 143 LDIFVSMRQTGDSLP-NAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALV 201
Query: 59 HEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
V + FA K F + + N+M+ GY+KS V A + F+ MP R+V SW+
Sbjct: 202 DMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNM 261
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
+I+A +G L + +M +G+ PD T + L+ C+ L S L GK H ++
Sbjct: 262 VISALSKSGRVREALDMVVDM-HGKGVRPDSTTYTSSLTACARLSS--LEWGKQLHVQVI 318
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
+N ++ +A+ +V++YAKCG K A VF + +RN +SWT LI G G +++
Sbjct: 319 RNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVE 378
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LF M+A + ++ +++ C +T + G + + + + ++ ++
Sbjct: 379 LFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVS-NSLISMY 437
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
K G L+ A E+I E +++ W + A
Sbjct: 438 AKCGNLQNA-ELIFNFMAERDIVSWTGMITA 467
>gi|449487105|ref|XP_004157498.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 142/410 (34%), Positives = 228/410 (55%), Gaps = 19/410 (4%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF +M V ++ F+ +L +C +H +L G+ S++YV T+L++
Sbjct: 110 IELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSNLYVRTNLINL 169
Query: 61 YVVTSFG------FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVAS 114
Y G AR LFDE+P+ N V WN+++ GY + G+ AR F+ MP RNV +
Sbjct: 170 YANGGDGGDFDLKRARYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRT 229
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
W+ M+A + G L LF +M G+ DQ+ + A LS C+ LG L +GK HG
Sbjct: 230 WTIMVAGFAQNGQCKLALSLFDQM-RRAGVELDQVALVAALSACAELGD--LTLGKWIHG 286
Query: 175 FIVKNEWELNE-----QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR 229
+ V+ W + L+ MYA CG + A VFE + +RN +SW+++I G A +
Sbjct: 287 Y-VERTWRSRHLPVLVSLNNALIHMYASCGVMDLAYKVFEEIPQRNTVSWSSIITGFAKQ 345
Query: 230 GYSEDALSLFEMMQATG---VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR 286
G +A+ +F++M +G V+P+E+TF G LTAC H GL+ +G + F+ + + + + P+
Sbjct: 346 GCGVEAIRIFQLMLCSGQNEVRPDEITFIGALTACSHAGLISDGIRLFQSMHKTFGVIPQ 405
Query: 287 IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQAL 346
I+HYGCMVDL +AG L EA +I +M ++PN +WG+ L+ C+ HK ++ V K
Sbjct: 406 IEHYGCMVDLLSRAGLLTEALSLIESMPMKPNNAVWGALLSGCRLHKNDEIVSHVAKHLS 465
Query: 347 RMVKPEND-GGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ P N G F L+ ++Y + +W+ VR+ M + V+K G S I
Sbjct: 466 FEIHPNNQAAGYFMLLANVYAADGRWQDTATVRRNMHDIGVKKPSGRSWI 515
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 155/333 (46%), Gaps = 15/333 (4%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV- 62
S + R S F I +LKSC F NL IH + I+ GF Y+ LL Y+
Sbjct: 16 ISAIGRSSRVRQQF-IFSVLKSCVSFRNLAKIH---AQIVVSGFSQKNYILNHLLSLYIS 71
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA----SWSAM 118
S G A+K+F+++ + WN +IKG+++S ++ + F+RM L V ++S +
Sbjct: 72 FGSLGSAQKVFEDITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFL 131
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
++A + + + G ++ ++ N G + +++ ++ G G K A ++
Sbjct: 132 LSACVRSRLFREGEQIHGRVLVN-GYWSNLYVRTNLINLYANGGDGGDFDLKRAR-YLFD 189
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ N L+ Y + G A VF+ M ERNV +WT ++ G A G + ALSL
Sbjct: 190 EMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSL 249
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR---KYFKMIDEEYDLEPRIQHYGCMVD 295
F+ M+ GV+ +++ L+AC G + G+ Y + L + ++
Sbjct: 250 FDQMRRAGVELDQVALVAALSACAELGDLTLGKWIHGYVERTWRSRHLPVLVSLNNALIH 309
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
++ G ++ AY+V + + N + W S +
Sbjct: 310 MYASCGVMDLAYKVFEEIP-QRNTVSWSSIITG 341
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 99/229 (43%), Gaps = 23/229 (10%)
Query: 148 QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMV 207
Q I +VL C ++ + H IV + + I L+ +Y G L A V
Sbjct: 27 QQFIFSVLKSCVSFRNLAKI-----HAQIVVSGFSQKNYILNHLLSLYISFGSLGSAQKV 81
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
FE + + W +I G S+ ++ LF+ M GV+ N T++ +L+ACV + L
Sbjct: 82 FEDITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLF 141
Query: 268 DEGRK-YFKMIDEEY--DLEPRIQHYGCMVDLFGKAG-----FLEEAYEVIRTMRLEPNV 319
EG + + +++ Y +L R +++L+ G L+ A + M + NV
Sbjct: 142 REGEQIHGRVLVNGYWSNLYVRTN----LINLYANGGDGGDFDLKRARYLFDEMP-DSNV 196
Query: 320 IIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+ W S LA FD A +V + PE + +T++ + N
Sbjct: 197 VGWNSLLAGYVRRGDFDGARKVFDEM-----PERNVRTWTIMVAGFAQN 240
>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
Length = 865
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 134/394 (34%), Positives = 230/394 (58%), Gaps = 5/394 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF+QM + + D F++ ++ C +L + LHS LK G I V V+ SL+
Sbjct: 356 VELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISM 415
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + A +F + E++ V+W +MI YS+ GNV +AR+FF+ M +NV +W+AM+
Sbjct: 416 YAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAML 475
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
AY+ GA + GL++++ M+S E + PD +T + GC+ LG+ L G G VK
Sbjct: 476 GAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKL--GDQIIGRTVKV 533
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
++ +A ++ MY+KCG + A VF+ + ++++SW A+I G + G + A+ +F
Sbjct: 534 GLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIF 593
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+ + G KP+ +++ VL+ C H+GLV EG+ YF M+ +++ P ++H+ CMVDL G+
Sbjct: 594 DDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGR 653
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG L EA ++I M ++P +WG+ L+ACK H ++AE K + P D G +
Sbjct: 654 AGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSP--DSGSYM 711
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
L+ +Y K + + ++RKLM ++ ++K G S
Sbjct: 712 LMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYS 745
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 155/332 (46%), Gaps = 40/332 (12%)
Query: 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLF-DELPERN 80
L+SC L LH ++ +G S V++ +LLH Y+ + AR+L ++ N
Sbjct: 11 LRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPN 70
Query: 81 AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMIS 140
+T N M+ GY+K G + +A + F RMP R+VASW+ +++ Y + Y L+ F M
Sbjct: 71 VITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHR 130
Query: 141 NEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG- 199
+ P+ T+ + C LG L + A + K + + + ++A LVDM+ +CG
Sbjct: 131 SGDSWPNAFTLACAMKSCGALGWHSLALQLLA--MVQKFDSQDDSEVAAALVDMFVRCGA 188
Query: 200 -------FLK-----------------------YALMVFELMEERNVISWTALICGSAHR 229
F++ +AL +F+ M ER+V+SW ++ +
Sbjct: 189 VDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQS 248
Query: 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQH 289
G +AL + MQ+ GV+ + T+T LTAC + G++ + P I
Sbjct: 249 GRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNL---PHIDP 305
Query: 290 Y--GCMVDLFGKAGFLEEAYEVIRTMRLEPNV 319
Y +V+L+ K+G +EA V ++ NV
Sbjct: 306 YVASALVELYAKSGCFKEAKGVFNSLHDRNNV 337
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 161/331 (48%), Gaps = 9/331 (2%)
Query: 1 MQLFSQMHR--QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL 58
++ F MHR S P ++F++ +KSC ++ L + + K VA +L+
Sbjct: 122 LETFLSMHRSGDSWP-NAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALV 180
Query: 59 HEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
+V + A +LF + E N+M+ GY K+ V A + F+ MP R+V SW+
Sbjct: 181 DMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNM 240
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
M++A +G L + +M S +G+ D T + L+ C+ L S L GK H ++
Sbjct: 241 MVSALSQSGRVREALDMVVDMQS-KGVRLDSTTYTSSLTACARLSS--LRWGKQLHAQVI 297
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
+N ++ +A+ LV++YAK G K A VF + +RN ++WT LI G G +++
Sbjct: 298 RNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVE 357
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LF M+A + ++ +++ C + GR+ + + ++ + ++ ++
Sbjct: 358 LFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVS-NSLISMY 416
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
K L+ A + R M E +++ W S + A
Sbjct: 417 AKCDNLQSAEAIFRFMN-EKDIVSWTSMITA 446
>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 150/396 (37%), Positives = 230/396 (58%), Gaps = 7/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+QL+S+M S+ D++ + ILK+C L +HS LKLG S+ V ++
Sbjct: 132 IQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMEL 191
Query: 61 Y-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y G AR++F+E+PE + V MI YS G V EA F R+ ++ W+AMI
Sbjct: 192 YGKCGELGDARRVFEEMPE-DVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMI 250
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
++ + L+ FR M E + P++ TI VLS CS LG+ L +G+ H ++ K
Sbjct: 251 DGFVRNEEMNRALEAFRGM-QGENVRPNEFTIVCVLSACSQLGA--LEIGRWVHSYMRKF 307
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
E ELN + L++MY++CG + A VF+ M++R+VI++ +I G + G S A+ LF
Sbjct: 308 EIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELF 367
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+M ++P +TF GVL AC H GLVD G K F + +Y +EP+I+HYGCMVDL G+
Sbjct: 368 RVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGR 427
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
G LEEAY++IRTM++ P+ I+ G+ L+ACK HK ++ E+V K + + + D G +
Sbjct: 428 VGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAK--VLEDRGQADSGTYV 485
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ +Y + KW+ A +VR M ++K G S I
Sbjct: 486 LLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSI 521
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 98/241 (40%), Gaps = 13/241 (5%)
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
DQ I ++L H+ V + H +++N + + L+ +KC + YA
Sbjct: 48 DQKQIISLLQRSKHINQVLPI-----HAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASR 102
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
+F+ NV +TALI G G DA+ L+ M + P+ +L AC
Sbjct: 103 IFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLA 162
Query: 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
+ EGR+ + R+ M +L+GK G L +A V M +V+ +
Sbjct: 163 LREGREVHSRALKLGLSSNRLVRLRIM-ELYGKCGELGDARRVFEEM--PEDVVASTVMI 219
Query: 327 AACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386
++ + + A V + R D +T + D + NE+ A + M +NV
Sbjct: 220 SSYSDQGLVEEAGAVFSRVRR-----KDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENV 274
Query: 387 R 387
R
Sbjct: 275 R 275
>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
Length = 761
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 145/401 (36%), Positives = 237/401 (59%), Gaps = 19/401 (4%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNN----LTVIHHLHSHILKLGFISHVYVATS 56
++LF +M + D + + ++ +C+ + +++ LH ++L + +V T+
Sbjct: 245 LRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQL----NCFVRTA 300
Query: 57 LLHEYV-VTSFGFARKLFDELPE-RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVAS 114
LL Y S G AR++FDEL RN+VTWN MI Y++ GN+ AR+ F MP RNV +
Sbjct: 301 LLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVT 360
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
W++MIA Y G ++LF+EMI+ + LTPD++T+ +V+S C HLG+ L +G
Sbjct: 361 WNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGA--LELGNWVVR 418
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
F+ +N+ +L+ ++ MY++CG ++ A VF+ M R+V+S+ LI G A G+ +
Sbjct: 419 FLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVE 478
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
A++L M+ G++P+ +TF GVLTAC H GL++EGRK F+ I +P I HY CMV
Sbjct: 479 AINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIK-----DPAIDHYACMV 533
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
DL G+ G LE+A + M +EP+ ++GS L A + HKQ ++ E + + +P+N
Sbjct: 534 DLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFEL-EPDNS 592
Query: 355 GGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G F L+ ++Y +W+ ER+R+ M V+K G S +
Sbjct: 593 GN-FILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWV 632
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 112/397 (28%), Positives = 183/397 (46%), Gaps = 77/397 (19%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+F M V D+F ++KS N + H+H+LKLG S +V +++ Y
Sbjct: 87 MFEHMQGCGVRPDAFVYPILIKSA---GNGGI--GFHAHVLKLGHGSDAFVRNAVIDMYA 141
Query: 63 -VTSFGFARKLFDE---------------------------------LPERNAVTWNTMI 88
+ G ARK+FDE +PERN +TW M+
Sbjct: 142 RLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMV 201
Query: 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ 148
GY+K ++ AR +F+ MP R+V SW+AM++ Y G + L+LF EM+ N G+ PD+
Sbjct: 202 TGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMV-NAGIEPDE 260
Query: 149 MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVF 208
T V+S CS G L S + + + +LN + T L+DMYAKCG + A +F
Sbjct: 261 TTWVTVISACSSRGDPCL--AASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGAARRIF 318
Query: 209 E--------------------------------LMEERNVISWTALICGSAHRGYSEDAL 236
+ M RNV++W ++I G A G S A+
Sbjct: 319 DELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAI 378
Query: 237 SLF-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
LF EM+ A + P+E+T V++AC H G ++ G + + E ++ I + M+
Sbjct: 379 ELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTEN-QIKLSISGHNAMIF 437
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
++ + G +E+A V + M +V+ + + ++ H
Sbjct: 438 MYSRCGSMEDAKRVFQEMATR-DVVSYNTLISGFAAH 473
>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
gi|223942207|gb|ACN25187.1| unknown [Zea mays]
gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
Length = 885
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 134/394 (34%), Positives = 230/394 (58%), Gaps = 5/394 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF+QM + + D F++ ++ C +L + LHS LK G I V V+ SL+
Sbjct: 376 VELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISM 435
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + A +F + E++ V+W +MI YS+ GNV +AR+FF+ M +NV +W+AM+
Sbjct: 436 YAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAML 495
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
AY+ GA + GL++++ M+S E + PD +T + GC+ LG+ L G G VK
Sbjct: 496 GAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKL--GDQIIGRTVKV 553
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
++ +A ++ MY+KCG + A VF+ + ++++SW A+I G + G + A+ +F
Sbjct: 554 GLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIF 613
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+ + G KP+ +++ VL+ C H+GLV EG+ YF M+ +++ P ++H+ CMVDL G+
Sbjct: 614 DDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGR 673
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG L EA ++I M ++P +WG+ L+ACK H ++AE K + P D G +
Sbjct: 674 AGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSP--DSGSYM 731
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
L+ +Y K + + ++RKLM ++ ++K G S
Sbjct: 732 LMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYS 765
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 155/332 (46%), Gaps = 40/332 (12%)
Query: 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLF-DELPERN 80
L+SC L LH ++ +G S V++ +LLH Y+ + AR+L ++ N
Sbjct: 31 LRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPN 90
Query: 81 AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMIS 140
+T N M+ GY+K G + +A + F RMP R+VASW+ +++ Y + Y L+ F M
Sbjct: 91 VITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHR 150
Query: 141 NEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG- 199
+ P+ T+ + C LG L + A + K + + + ++A LVDM+ +CG
Sbjct: 151 SGDSWPNAFTLACAMKSCGALGWHSLALQLLA--MVQKFDSQDDSEVAAALVDMFVRCGA 208
Query: 200 -------FLK-----------------------YALMVFELMEERNVISWTALICGSAHR 229
F++ +AL +F+ M ER+V+SW ++ +
Sbjct: 209 VDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQS 268
Query: 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQH 289
G +AL + MQ+ GV+ + T+T LTAC + G++ + P I
Sbjct: 269 GRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNL---PHIDP 325
Query: 290 Y--GCMVDLFGKAGFLEEAYEVIRTMRLEPNV 319
Y +V+L+ K+G +EA V ++ NV
Sbjct: 326 YVASALVELYAKSGCFKEAKGVFNSLHDRNNV 357
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 161/331 (48%), Gaps = 9/331 (2%)
Query: 1 MQLFSQMHR--QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL 58
++ F MHR S P ++F++ +KSC ++ L + + K VA +L+
Sbjct: 142 LETFLSMHRSGDSWP-NAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALV 200
Query: 59 HEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
+V + A +LF + E N+M+ GY K+ V A + F+ MP R+V SW+
Sbjct: 201 DMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNM 260
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
M++A +G L + +M S +G+ D T + L+ C+ L S L GK H ++
Sbjct: 261 MVSALSQSGRVREALDMVVDMQS-KGVRLDSTTYTSSLTACARLSS--LRWGKQLHAQVI 317
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
+N ++ +A+ LV++YAK G K A VF + +RN ++WT LI G G +++
Sbjct: 318 RNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVE 377
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LF M+A + ++ +++ C + GR+ + + ++ + ++ ++
Sbjct: 378 LFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVS-NSLISMY 436
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
K L+ A + R M E +++ W S + A
Sbjct: 437 AKCDNLQSAEAIFRFMN-EKDIVSWTSMITA 466
>gi|222628408|gb|EEE60540.1| hypothetical protein OsJ_13880 [Oryza sativa Japonica Group]
Length = 594
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 141/370 (38%), Positives = 213/370 (57%), Gaps = 6/370 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF M R V D I +L +C H NL +HS++L + V+ +L++ Y
Sbjct: 157 LFHSMKRSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMYA 216
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
A KL++ + E+ V TM+ GY+K+G V A F MP ++V SWSAMIA
Sbjct: 217 SCADMEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAG 276
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y + L LF +M G+ PD++T+ +V+S C+++G+ L + H F+ +
Sbjct: 277 YAESSKPMEALNLFHDM-QRSGVKPDEITMLSVISACANVGA--LEKARCIHSFVENHSM 333
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
I L+DM++KCG L AL VF M ++NV++WT++I SA G AL+LFE
Sbjct: 334 CKILPIGNALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFEN 393
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M++ G++PN +TF G+L AC H GLV+EGR FK++ ++Y +EP +HYGCMVDL G+A
Sbjct: 394 MKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAK 453
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L +A ++I++M L PNV+IWGS LAAC+ H ++ K+ L + N GG L+
Sbjct: 454 LLGQAADLIQSMHLRPNVVIWGSLLAACRMHGDLELGTFAAKKILEL--DPNHGGAQVLL 511
Query: 362 CDLYTMNEKW 371
++Y W
Sbjct: 512 SNIYAEYGNW 521
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/356 (25%), Positives = 159/356 (44%), Gaps = 75/356 (21%)
Query: 9 RQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS-FG 67
R+++PS +L++ +L H ++G +V T+L+ Y
Sbjct: 69 RRALPS-------LLRAIAFARSLGTAGAAHGLAFRVGAEVDGFVGTALVRAYAACGRVE 121
Query: 68 FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
AR++FD +P+R+ V W M+ Y C+AR+
Sbjct: 122 DARRVFDGMPDRDLVAWGVMLDCY------CQARN------------------------- 150
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
Y+ L LF M + + PDQ+ I VLS C+H + L GK+ H +++ ++ ++ Q+
Sbjct: 151 YEEALLLFHSMKRSR-VVPDQVIIATVLSTCAH--TRNLRFGKAIHSYMLVSDTLIDAQV 207
Query: 188 ATILVDMYAKC-------------------------------GFLKYALMVFELMEERNV 216
+ L++MYA C G ++ A +F M ++V
Sbjct: 208 SCALMNMYASCADMEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDV 267
Query: 217 ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKM 276
+SW+A+I G A +AL+LF MQ +GVKP+E+T V++AC + G +++ R
Sbjct: 268 VSWSAMIAGYAESSKPMEALNLFHDMQRSGVKPDEITMLSVISACANVGALEKARCIHSF 327
Query: 277 IDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
+ E + + + ++D+F K G L A +V M + NV+ W S + A H
Sbjct: 328 V-ENHSMCKILPIGNALIDMFSKCGSLTLALDVFNAMP-QKNVVTWTSIITASAMH 381
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
P + + ++L + S+G +AHG + E++ + T LV YA CG ++ A
Sbjct: 66 APGRRALPSLLRAIAFARSLG--TAGAAHGLAFRVGAEVDGFVGTALVRAYAACGRVEDA 123
Query: 205 LMVFELMEERNVISWTALI-CGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263
VF+ M +R++++W ++ C R Y E+AL LF M+ + V P+++ VL+ C H
Sbjct: 124 RRVFDGMPDRDLVAWGVMLDCYCQARNY-EEALLLFHSMKRSRVVPDQVIIATVLSTCAH 182
Query: 264 T 264
T
Sbjct: 183 T 183
>gi|356557876|ref|XP_003547236.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like [Glycine max]
Length = 912
Score = 268 bits (684), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 137/394 (34%), Positives = 230/394 (58%), Gaps = 8/394 (2%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
++ M R + + +++++ +C N + LH ++K GF + ++ T+++H Y
Sbjct: 520 MYRAMLRSGLALNEILVVNLVSACGRLNAIGDGWQLHGMVVKKGFDCYNFIQTTIIHFYA 579
Query: 63 VTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
A F+ + + +WN ++ G+ K+ V +AR F+ MP R+V SWS MI+
Sbjct: 580 ACGMMDLACLQFEVGAKDHLESWNALVSGFIKNRMVDQARKIFDDMPERDVFSWSTMISG 639
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y L+LF +M+++ G+ P+++T+ +V S + LG+ L G+ AH +I
Sbjct: 640 YAQTDQSRIALELFHKMVAS-GIKPNEVTMVSVFSAIATLGT--LKEGRWAHEYICNESI 696
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEER--NVISWTALICGSAHRGYSEDALSLF 239
LN+ + L+DMYAKCG + AL F + ++ +V W A+ICG A G++ L +F
Sbjct: 697 PLNDNLRAALIDMYAKCGSINSALQFFNQIRDKTFSVSPWNAIICGLASHGHASMCLDVF 756
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MQ +KPN +TF GVL+AC H GLV+ GR+ F+++ Y++EP I+HYGCMVDL G+
Sbjct: 757 SDMQRYNIKPNPITFIGVLSACCHAGLVEPGRRIFRIMKSAYNVEPDIKHYGCMVDLLGR 816
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG LEEA E+IR+M ++ +++IWG+ LAAC+ H ++ ER ++L + P + GG
Sbjct: 817 AGLLEEAEEMIRSMPMKADIVIWGTLLAACRTHGDVNIGERA-AESLAGLAPSHGGGK-V 874
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
L+ ++Y +WE VR+ + NQ + + G S
Sbjct: 875 LLSNIYADAGRWEDVSLVRRAIQNQRMERMPGCS 908
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 112/386 (29%), Positives = 187/386 (48%), Gaps = 40/386 (10%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+++F M V + ++++++ +C+HF + +H+ +KL V V+T+L+
Sbjct: 386 LEVFKDMRSDGVVPNDLTLVNVIYACSHFGEILNCRMIHAIAIKLFVEGLVLVSTNLMRA 445
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + S G AR+LFD +PE N V+WN M+ GY+K+G V AR+ FER+P ++V SW MI
Sbjct: 446 YCLCSGVGEARRLFDRMPEVNLVSWNVMLNGYAKAGLVDMARELFERVPDKDVISWGTMI 505
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y+ L ++R M+ + GL +++ + ++S C L ++G G HG +VK
Sbjct: 506 DGYILMNRLHEALVMYRAMLRS-GLALNEILVVNLVSACGRLNAIG--DGWQLHGMVVKK 562
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFEL----------------------------- 210
++ I T ++ YA CG + A + FE+
Sbjct: 563 GFDCYNFIQTTIIHFYAACGMMDLACLQFEVGAKDHLESWNALVSGFIKNRMVDQARKIF 622
Query: 211 --MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
M ER+V SW+ +I G A S AL LF M A+G+KPNE+T V +A G +
Sbjct: 623 DDMPERDVFSWSTMISGYAQTDQSRIALELFHKMVASGIKPNEVTMVSVFSAIATLGTLK 682
Query: 269 EGRKYFKMI-DEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEP-NVIIWGSFL 326
EGR + I +E L ++ ++D++ K G + A + +R + +V W + +
Sbjct: 683 EGRWAHEYICNESIPLNDNLR--AALIDMYAKCGSINSALQFFNQIRDKTFSVSPWNAII 740
Query: 327 AACKEHKQFDMAERVIKQALRM-VKP 351
H M V R +KP
Sbjct: 741 CGLASHGHASMCLDVFSDMQRYNIKP 766
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/354 (24%), Positives = 161/354 (45%), Gaps = 50/354 (14%)
Query: 37 HLHSHILKLGFISHVYVATSLLHEYVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSG 95
LHS +LKLG S+ ++ SL++ Y S A+ LFD P N ++ N M+ GY+K+G
Sbjct: 290 QLHSLVLKLGLHSNTFIQNSLINMYAKRGSIKDAQLLFDACPTLNPISCNIMVCGYAKAG 349
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155
+ AR F+ MP + S++ MI + + L++F++M S +G+ P+ +T+ V+
Sbjct: 350 QLDNARKLFDIMPDKGCVSYTTMIMGLVQNECFREALEVFKDMRS-DGVVPNDLTLVNVI 408
Query: 156 SGCSHLGSVGLLMGKSAHGFIVK-------------------------------NEWELN 184
CSH G + L + H +K E+N
Sbjct: 409 YACSHFGEI--LNCRMIHAIAIKLFVEGLVLVSTNLMRAYCLCSGVGEARRLFDRMPEVN 466
Query: 185 EQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQA 244
++++ YAK G + A +FE + +++VISW +I G +AL ++ M
Sbjct: 467 LVSWNVMLNGYAKAGLVDMARELFERVPDKDVISWGTMIDGYILMNRLHEALVMYRAMLR 526
Query: 245 TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE-YDLEPRIQHYGCMVDLFGKAGFL 303
+G+ NE+ +++AC + +G + M+ ++ +D IQ ++ + G +
Sbjct: 527 SGLALNEILVVNLVSACGRLNAIGDGWQLHGMVVKKGFDCYNFIQTT--IIHFYAACGMM 584
Query: 304 EEA---YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
+ A +EV LE W + ++ +++ D A ++ PE D
Sbjct: 585 DLACLQFEVGAKDHLES----WNALVSGFIKNRMVDQARKIFDDM-----PERD 629
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 85/224 (37%), Gaps = 72/224 (32%)
Query: 169 GKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAH 228
G+ H ++K N I L++MYAK G +K A ++F+ N IS ++CG A
Sbjct: 288 GRQLHSLVLKLGLHSNTFIQNSLINMYAKRGSIKDAQLLFDACPTLNPISCNIMVCGYAK 347
Query: 229 RGYSEDALSLFEM-------------------------------MQATGVKPNEMTFTGV 257
G ++A LF++ M++ GV PN++T V
Sbjct: 348 AGQLDNARKLFDIMPDKGCVSYTTMIMGLVQNECFREALEVFKDMRSDGVVPNDLTLVNV 407
Query: 258 LTACVHTGL-----------------------------------VDEGRKYFKMIDEEYD 282
+ AC H G V E R+ F + E
Sbjct: 408 IYACSHFGEILNCRMIHAIAIKLFVEGLVLVSTNLMRAYCLCSGVGEARRLFDRMPEV-- 465
Query: 283 LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
+ + M++ + KAG ++ A E+ + + +VI WG+ +
Sbjct: 466 ---NLVSWNVMLNGYAKAGLVDMARELFERVP-DKDVISWGTMI 505
>gi|356577724|ref|XP_003556973.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Glycine max]
Length = 549
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 146/400 (36%), Positives = 231/400 (57%), Gaps = 10/400 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF+ + +P DS+S +LK+ + + V +H + G SH V TSL+
Sbjct: 112 ISLFNAIRLLGMPPDSYSFPFVLKAVVCLSAVHVGKQIHCQAIVSGLDSHPSVVTSLVQM 171
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL--RNVASWSA 117
Y + ARKLFD ++A WN M+ GY+K GN+ AR+ FE MP R+V SW+
Sbjct: 172 YSSCAHLSSARKLFDGATFKHAPLWNAMLAGYAKVGNMSNARNLFECMPEKDRDVVSWTT 231
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
+I+ Y + + + LFR M+ + + PD++ I AVLS C+ LG+ L +G+ H +I
Sbjct: 232 LISGYTQTHSPNEAITLFRIMLL-QNVQPDEIAILAVLSACADLGA--LQLGEWIHNYIE 288
Query: 178 KNEWELNEQIATI--LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
K+ +L + + L+DMYAK G + A +F+ M+ + +I+WT +I G A G+ ++A
Sbjct: 289 KHNNKLRKTVPLCNSLIDMYAKSGDISKARQLFQNMKHKTIITWTTVISGLALHGFGKEA 348
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
L +F M+ VKPNE+T VL+AC H GLV+ GR F + +Y +EP+I+HYGCM+D
Sbjct: 349 LDVFSCMEKARVKPNEVTLIAVLSACSHVGLVELGRNIFTSMRSKYGIEPKIEHYGCMID 408
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
L G+AG+L+EA E++R M E N +WGS L+A + +A ++ L +++P N G
Sbjct: 409 LLGRAGYLQEAMELVRVMPSEANAAVWGSLLSASNRYGDAALAAEALRH-LSVLEPHNCG 467
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++L+ + Y W+ A VRK+M + K G S +
Sbjct: 468 N-YSLLSNTYAALGWWKEAAMVRKVMRDTCAEKVPGVSFV 506
>gi|326498517|dbj|BAJ98686.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 647
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 141/397 (35%), Positives = 231/397 (58%), Gaps = 7/397 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +FS M R+ P D ++ ++ +C + H +++ G S + + L+H
Sbjct: 251 LHMFSCMRREMWPVDEALMVSVVAACAQSEVIRNGELCHGLVIRAGLCSLLNIQNVLIHM 310
Query: 61 Y-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y AR+LFD + +WN+MI GY K+G+V A F MP ++ SWS MI
Sbjct: 311 YSCCLDVVAARRLFDSGDCLDQFSWNSMIAGYLKNGHVENAMTLFSAMPDKDNVSWSTMI 370
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ + L +F M + +G+ PD++TI +V+S C++L + L GKS H ++ +N
Sbjct: 371 SGCVQNNQSSHALTVFDNMRA-QGVRPDEVTIVSVISACTNLSA--LEKGKSVHDYVRQN 427
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + + T L+DMY KCG+L+ A+ VF +MEE+ W A+I G A G +L +F
Sbjct: 428 KCYITLVLGTSLIDMYMKCGYLEAAMDVFNIMEEKGAPCWNAVIVGLAMNGLVTKSLEIF 487
Query: 240 EMMQATGVK-PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
M+A+ PNE+TFTGVL+AC H GLV+EGR +FK++ +Y + P I+HYGCMVDL G
Sbjct: 488 SEMEASSTAIPNEITFTGVLSACRHAGLVEEGRHFFKLMQHKYQIVPNIRHYGCMVDLLG 547
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG+++EA ++I +M + P+V WG+ L AC +H + ++ ERV ++ + + P +D G
Sbjct: 548 RAGYVKEAEDLIESMPMSPDVPAWGALLGACWKHGENEVGERVGRKLVNL-DPRHD-GFQ 605
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
T++ ++Y W+ +R M ++V K G SV+
Sbjct: 606 TMLSNIYAKEGMWQSVNDLRDSMKQRHVPKVSGYSVV 642
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/381 (23%), Positives = 170/381 (44%), Gaps = 70/381 (18%)
Query: 11 SVPS--DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGF 68
S+P+ D+++ + +C +++ + SH ++ GF +Y+ +L+H Y V +
Sbjct: 96 SLPASPDTYTHPILAAACAARRDVSEGRQVQSHAIRHGFGDDLYLRNALMHMYSVCGCLW 155
Query: 69 -ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRN---------------- 111
AR++FD P +AV+WNT++ Y +G+V +A F RMP RN
Sbjct: 156 DARRVFDAGPVWDAVSWNTILAAYVHAGDVDQAVGVFARMPKRNATAVSSMVSLFGRRGM 215
Query: 112 ---------------VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLS 156
+ +W+AMI+ + + L +F M E D+ + +V++
Sbjct: 216 VEEARGVFDEAECRDIFTWTAMISCFERNDMFAEALHMFSCM-RREMWPVDEALMVSVVA 274
Query: 157 GCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC------------------ 198
C+ S + G+ HG +++ I +L+ MY+ C
Sbjct: 275 ACAQ--SEVIRNGELCHGLVIRAGLCSLLNIQNVLIHMYSCCLDVVAARRLFDSGDCLDQ 332
Query: 199 --------GFLK-----YALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
G+LK A+ +F M +++ +SW+ +I G S AL++F+ M+A
Sbjct: 333 FSWNSMIAGYLKNGHVENAMTLFSAMPDKDNVSWSTMISGCVQNNQSSHALTVFDNMRAQ 392
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305
GV+P+E+T V++AC + +++G+ + + + ++D++ K G+LE
Sbjct: 393 GVRPDEVTIVSVISACTNLSALEKGKSVHDYVRQNKCYITLVLGTS-LIDMYMKCGYLEA 451
Query: 306 AYEVIRTMRLEPNVIIWGSFL 326
A +V M E W + +
Sbjct: 452 AMDVFNIME-EKGAPCWNAVI 471
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 96/230 (41%), Gaps = 22/230 (9%)
Query: 106 RMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVG 165
R P N S + ++ A L AG L L+ + + +PD T + + C+ V
Sbjct: 67 RCP--NAFSCNTLLKAALLAGMPHLCLPLYTSLPA----SPDTYTHPILAAACAARRDVS 120
Query: 166 LLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICG 225
G+ +++ + + + L+ MY+ CG L A VF+ + +SW ++
Sbjct: 121 --EGRQVQSHAIRHGFGDDLYLRNALMHMYSVCGCLWDARRVFDAGPVWDAVSWNTILAA 178
Query: 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP 285
H G + A+ +F M K N + +++ G+V+E R F DE E
Sbjct: 179 YVHAGDVDQAVGVFARMP----KRNATAVSSMVSLFGRRGMVEEARGVF---DEA---EC 228
Query: 286 R-IQHYGCMVDLFGKAGFLEEAYEVIRTMRLE---PNVIIWGSFLAACKE 331
R I + M+ F + EA + MR E + + S +AAC +
Sbjct: 229 RDIFTWTAMISCFERNDMFAEALHMFSCMRREMWPVDEALMVSVVAACAQ 278
>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
Length = 890
Score = 267 bits (683), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 141/395 (35%), Positives = 222/395 (56%), Gaps = 6/395 (1%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
QL +M R+ V + + + ILK+C+ L +H+ I K+GF S + T++ + Y
Sbjct: 372 QLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMY 431
Query: 62 V-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
S A ++F ++ +N V W +++ Y K G++ A F M RNV SW+ MIA
Sbjct: 432 AKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIA 491
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y +G +L M EG PD++TI ++L C L + L GK H VK
Sbjct: 492 GYAQSGDIAKVFELLSSM-KVEGFQPDRVTIISILEACGALSA--LERGKLVHAEAVKLG 548
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
E + +AT L+ MY+KCG + A VF+ + R+ ++W A++ G G +A+ LF+
Sbjct: 549 LESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFK 608
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M V PNE+TFT V++AC GLV EGR+ F+++ E++ ++P QHYGCMVDL G+A
Sbjct: 609 RMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRA 668
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G L+EA E I+ M EP++ +W + L ACK H +AE LR+ +P N V+
Sbjct: 669 GRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILRL-EPSN-ASVYVT 726
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y +W+ + +VRK+M ++ ++K RG S I
Sbjct: 727 LSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSI 761
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 100/342 (29%), Positives = 163/342 (47%), Gaps = 46/342 (13%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFR--EMISNE 142
N++I YSK G+V F RM LR+V +WS+MIAAY AG P K F E + +
Sbjct: 117 NSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAY--AGNNHPA-KAFDTFERMKDA 173
Query: 143 GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLK 202
+ P+++T ++L C++ L + H + + E + +AT L+ MY+KCG +
Sbjct: 174 NIEPNRITFLSILKACNNYSM--LEKAREIHTVVKASGMETDVAVATALITMYSKCGEIS 231
Query: 203 YALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACV 262
A +F+ M+ERNV+SWTA+I +A +A L+E M G+ PN +TF +L +C
Sbjct: 232 LACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCN 291
Query: 263 HTGLVDEGRKYFKMIDE---EYDL---------------------------EPRIQHYGC 292
++ GR+ I E E D+ + + +
Sbjct: 292 TPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSA 351
Query: 293 MVDLFGKAGF-----LEEAYEVIRTMRLE---PNVIIWGSFLAACKEHKQFDMAERVIKQ 344
M+ + ++G+ L+E ++++ MR E PN + + S L AC H + R I
Sbjct: 352 MIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQG-RQIHA 410
Query: 345 ALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386
+ V E+D + T I ++Y AE+V M N+NV
Sbjct: 411 EISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNV 452
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 162/346 (46%), Gaps = 40/346 (11%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV 63
F +M ++ + + L ILK+C +++ L +H+ + G + V VAT+L+
Sbjct: 167 FERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALI----- 221
Query: 64 TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL 123
TM YSK G + A + F++M RNV SW+A+I A
Sbjct: 222 ----------------------TM---YSKCGEISLACEIFQKMKERNVVSWTAIIQANA 256
Query: 124 NAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWEL 183
+ +L+ +M+ G++P+ +T ++L+ C+ L G+ H I + E
Sbjct: 257 QHRKLNEAFELYEKML-QAGISPNAVTFVSLLNSCN--TPEALNRGRRIHSHISERGLET 313
Query: 184 NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS-----EDALSL 238
+ +A L+ MY KC ++ A F+ M +R+VISW+A+I G A GY ++ L
Sbjct: 314 DVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQL 373
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
E M+ GV PN++TF +L AC G +++GR+ I + E + +++
Sbjct: 374 LERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEIS-KVGFESDRSLQTAIFNMYA 432
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
K G + EA +V M NV+ W S L + AE+V +
Sbjct: 433 KCGSIYEAEQVFSKME-NKNVVAWASLLTMYIKCGDLTSAEKVFSE 477
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 104/214 (48%), Gaps = 5/214 (2%)
Query: 125 AGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN 184
AG ++L +I GL + T G ++ C+ L GK H + + ++
Sbjct: 56 AGRLKEAIQLL-GIIKQRGLLVNSNTYGCIIEHCAKLRR--FEDGKMVHKQLDELGLAID 112
Query: 185 EQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQA 244
+ L++ Y+K G + VF M R+V++W+++I A + A FE M+
Sbjct: 113 IYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKD 172
Query: 245 TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLE 304
++PN +TF +L AC + ++++ R+ ++ + +E + ++ ++ K G +
Sbjct: 173 ANIEPNRITFLSILKACNNYSMLEKAREIHTVV-KASGMETDVAVATALITMYSKCGEIS 231
Query: 305 EAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
A E+ + M+ E NV+ W + + A +H++ + A
Sbjct: 232 LACEIFQKMK-ERNVVSWTAIIQANAQHRKLNEA 264
>gi|147771061|emb|CAN60969.1| hypothetical protein VITISV_033859 [Vitis vinifera]
Length = 722
Score = 267 bits (683), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 141/402 (35%), Positives = 236/402 (58%), Gaps = 10/402 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFN-NLTVI---HHLHSHILKLGFISHVYVATS 56
+QLF+QM R V D F+ +LK + +L +I +H +LKLGF H++V +
Sbjct: 326 VQLFNQMRRNCVDPDGFTFTFLLKGRSRMRIDLPLIVASDEIHGAVLKLGFCFHLFVMNA 385
Query: 57 LLHEYVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASW 115
L+H Y A ++F+E+ + V+W+ ++ + ++G + AR F+ MP R+V SW
Sbjct: 386 LIHLYAARGVPAAAHQVFNEMVGADVVSWSGLVVAHVRAGELELARQVFDEMPERDVVSW 445
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
+ M++ Y A L+LFREM + G+ PD++ + V+S C+ LG L G H +
Sbjct: 446 TVMVSGYAQAKRSREALELFREM-RDVGVRPDEVAMVIVISACTSLGD--LETGFEVHRY 502
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
I +N + + L+DMYAKCG + A VF ME +++I+W ++I A+ G +EDA
Sbjct: 503 IDENGFGWMVSLCNALIDMYAKCGCMDLAWQVFNNMERKSLITWNSMISACANHGNAEDA 562
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
+F +M +G++P+ +TF +LTA H G VD+G F+ + +Y +E ++HYGCMVD
Sbjct: 563 FRVFTLMLXSGIRPDGVTFLALLTAYTHKGWVDDGYGLFESMQRDYGVEAGVEHYGCMVD 622
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
+ G+AG LEEAY++I +M + N ++WG+ LAAC+ + +M ERV+K+ + + KP+ +G
Sbjct: 623 MLGRAGRLEEAYKLITSMSMPCNDVVWGALLAACRIYGDVEMGERVLKKLIEL-KPD-EG 680
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
G + L+ D+Y + A +R+ M +K G S + +
Sbjct: 681 GYYILLRDIYVAAGRRAEAIELRRAMDVNGAKKTLGCSWVGA 722
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 81/419 (19%), Positives = 160/419 (38%), Gaps = 62/419 (14%)
Query: 16 SFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKL 72
S S+ + ++C L +IH + + +H V + V+ G +A +L
Sbjct: 87 SQSLASMAEACLAMQALKLIH---ARAFRANLHNHALVLAKIFRFAAVSPNGCLHYADRL 143
Query: 73 FDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL--------- 123
F ++ + N +NT+I+GYSKS + ++ F +M RN +L
Sbjct: 144 FSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMR-RNCVDPDGFTFTFLLKGRSRMRI 202
Query: 124 ------------NAGAYDPGLKLFREMISNE--GLTPDQMTIGAVLSGCSHLGSVGLLMG 169
AG K + ISN+ + P ++ ++ C + ++ L+
Sbjct: 203 DLPLIVASDEIHGAGVDYDKYKTLKSYISNKVMHMLPTSQSLASMAEACLAMQALKLIHA 262
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR 229
++ + + L + V + G L YA +F + + N + LI G +
Sbjct: 263 RAFRANLHNHALVLAKIFRFAAV---SPNGCLHYADRLFSQIHQPNTFFYNTLIRGYSKS 319
Query: 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK----MIDEEYDLEP 285
++ LF M+ V P+ TFT +L +GR + +I ++
Sbjct: 320 SSPSQSVQLFNQMRRNCVDPDGFTFTFLL----------KGRSRMRIDLPLIVASDEIHG 369
Query: 286 RIQHYG---------CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFD 336
+ G ++ L+ G A++V M + +V+ W + A + +
Sbjct: 370 AVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEM-VGADVVSWSGLVVAHVRAGELE 428
Query: 337 MAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+A +V + PE D +T++ Y ++ A + + M + VR + VI
Sbjct: 429 LARQVFDEM-----PERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVI 482
>gi|19071652|gb|AAL84319.1|AC073556_36 putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
Length = 545
Score = 267 bits (683), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 143/420 (34%), Positives = 235/420 (55%), Gaps = 41/420 (9%)
Query: 12 VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL------------- 58
V D + +L++CT +H+H++K G S +V +L+
Sbjct: 108 VRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAA 167
Query: 59 -------HEYVVT------------SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCE 99
E V G AR LFDE P ++ V+WN MI Y+K G++
Sbjct: 168 ALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMAL 227
Query: 100 ARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCS 159
AR+ F+++P R+V SW+ MI+ Y+ G++ L+LF +M G PD +T+ ++LS C+
Sbjct: 228 ARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQM-QRMGEKPDIVTMLSLLSACA 286
Query: 160 HLGS--VGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVI 217
G VG + S +N + + + L+DMYAKCG +K A VF M +++V
Sbjct: 287 DSGDLDVGQRLHSSLSDMFSRNGFPV--VLGNALIDMYAKCGSMKSAHEVFWSMRDKDVS 344
Query: 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI 277
+W +++ G A G+ +++ +FE M V+P+E+TF VL AC H G+VD+GR++F ++
Sbjct: 345 TWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLM 404
Query: 278 DEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDM 337
+Y +EP I+HYGCMVD+ G+AG L+EA+E I TM+ EPN +IW + L+AC+ H + ++
Sbjct: 405 QHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGEIEL 464
Query: 338 AERVIKQALRMVKPEND-GGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
A+ +Q ++K ND G + L+ ++Y +W G+E++RKLM + V K G + +
Sbjct: 465 AKHANRQ---LLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMDDSGVNKEAGQTFVD 521
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 84/352 (23%), Positives = 159/352 (45%), Gaps = 61/352 (17%)
Query: 40 SHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCE 99
S + +L F S V V ++ H Y+V FD++P + +NT+I+G + + +
Sbjct: 41 SELRELLFASAVAVRGAIAHAYLV---------FDQIPRPDRFMYNTLIRGAAHTAAPRD 91
Query: 100 ARDFFERMPLR--------NVASWSAMIAAYLNAGAYDPGLKLFREMI------------ 139
A + RM R + ++ ++ A GA D G+++ ++
Sbjct: 92 AVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKN 151
Query: 140 ---------SNEGLTP---------DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
N G+ D + A+++GC+ G +G +A +E
Sbjct: 152 ALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIG-----AARDLF--DEC 204
Query: 182 ELNEQIA-TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ + ++ +++ YAK G + A +F+ + ER+V+SW +I G G AL LFE
Sbjct: 205 PVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFE 264
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG-CMVDLFGK 299
MQ G KP+ +T +L+AC +G +D G++ + + + G ++D++ K
Sbjct: 265 QMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAK 324
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH----KQFDMAERVIKQALR 347
G ++ A+EV +MR + +V W S + H + DM E+++K +R
Sbjct: 325 CGSMKSAHEVFWSMR-DKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVR 375
>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
Length = 538
Score = 267 bits (683), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 152/456 (33%), Positives = 236/456 (51%), Gaps = 67/456 (14%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF QM V + F+ ILKSC N L +H ++K GF ++ +VAT+L+ Y
Sbjct: 38 LFRQMKGLDVMPNCFTFPVILKSCVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYA 97
Query: 63 VTS--------FG------------------------FARKLFDELPERNAVTWNTMIKG 90
FG AR+LFD PER+ V WNTMI G
Sbjct: 98 SGGAIHAAYRVFGEMIERNVIAWTAMINGYITCCDLVTARRLFDLAPERDIVLWNTMISG 157
Query: 91 YSKSGNVCEARD-------------------------------FFERMPLRNVASWSAMI 119
Y ++ +V AR+ FE MP RNV SW+A+I
Sbjct: 158 YIEAKDVIRARELFDKMPNKDVMSWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALI 217
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y G + L F+ M+ + + P+ T+ VLS C+ LG++ L GK H + +
Sbjct: 218 GGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLGALDL--GKWVHVYAESH 275
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
++ N + L+DMYAKCG ++ AL VF+ M+ +++ISW +I G A G+ DAL+LF
Sbjct: 276 GYKGNVYVRNALMDMYAKCGVVETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLF 335
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M+ G P+ +TF G+L AC H GLV++G YFK + ++Y + PRI+HYGC+VDL G+
Sbjct: 336 SHMKIAGENPDGITFIGILCACTHMGLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGR 395
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG L A + IR M +E + +IW + L AC+ +K ++AE +++ + +P+N +
Sbjct: 396 AGLLAHAVDFIRKMPIEADAVIWAALLGACRVYKNVELAELALEKLIEF-EPKNPAN-YV 453
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++ ++Y +W+ R++ M + +K G S+I
Sbjct: 454 MLSNIYGDFGRWKDVARLKVAMRDTGFKKLPGCSLI 489
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 34/157 (21%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A K+FD++PE NA WN M +GYS++ ++
Sbjct: 4 AHKVFDQIPEPNASIWNAMFRGYSQN-------------------------------ESH 32
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ LFR+M + P+ T +L C + + L G+ H F++K+ + N +A
Sbjct: 33 KDVIVLFRQM-KGLDVMPNCFTFPVILKSCVKINA--LKEGEEVHCFVIKSGFRANPFVA 89
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICG 225
T L+DMYA G + A VF M ERNVI+WTA+I G
Sbjct: 90 TTLIDMYASGGAIHAAYRVFGEMIERNVIAWTAMING 126
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 12/145 (8%)
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
VF+ + E N W A+ G + +D + LF M+ V PN TF +L +CV
Sbjct: 7 VFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSCVKINA 66
Query: 267 VDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS- 324
+ EG + + +I + P + ++D++ G + AY V M +E NVI W +
Sbjct: 67 LKEGEEVHCFVIKSGFRANPFVAT--TLIDMYASGGAIHAAYRVFGEM-IERNVIAWTAM 123
Query: 325 ---FLAACK---EHKQFDMA-ERVI 342
++ C + FD+A ER I
Sbjct: 124 INGYITCCDLVTARRLFDLAPERDI 148
>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Vitis vinifera]
Length = 731
Score = 267 bits (683), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 148/398 (37%), Positives = 231/398 (58%), Gaps = 8/398 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISH--VYVATSLL 58
++L +M+ V +++ ++ N+ + +H+++++ H V T+LL
Sbjct: 210 LELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALL 269
Query: 59 HEYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
Y G AR+LF+ L ++ V+W MI G +S + EAR F+ R+V W+A
Sbjct: 270 DMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTA 329
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
M++AY A D LF +M ++ G+ P ++TI ++LS C+ G++ L GK H +I
Sbjct: 330 MLSAYAQANCIDQAFNLFDQMRTS-GVRPTKVTIVSLLSLCAVAGALDL--GKWVHSYID 386
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
K E++ + T LVDMYAKCG + A +F R++ W A+I G A GY E+AL
Sbjct: 387 KERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALD 446
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
+F M+ GVKPN++TF G+L AC H GLV EG+K F+ + + L P+I+HYGCMVDL
Sbjct: 447 IFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLL 506
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
G+AG L+EA+E+I++M ++PN I+WG+ +AAC+ HK + E Q L ++PEN G
Sbjct: 507 GRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLE-IEPEN-CGY 564
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y +W A VRK M ++K G SVI
Sbjct: 565 NVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVI 602
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 87/388 (22%), Positives = 169/388 (43%), Gaps = 71/388 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +++Q+ + D+F +LK+C + + +H +LK G V+V +L+
Sbjct: 109 LNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLM 168
Query: 61 Y-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y +AR +FD++ ER+ V+W+TMI+ S++
Sbjct: 169 YGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKE----------------------- 205
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK- 178
+D L+L REM + + P ++ + ++++ + + + MGK+ H ++++
Sbjct: 206 --------FDMALELIREMNFMQ-VRPSEVAMVSMVNLFA--DTANMRMGKAMHAYVIRN 254
Query: 179 -NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGS----------- 226
N + T L+DMYAKCG L A +F + ++ V+SWTA+I G
Sbjct: 255 SNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARA 314
Query: 227 --------------------AHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
A + A +LF+ M+ +GV+P ++T +L+ C G
Sbjct: 315 LFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGA 374
Query: 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
+D G+ ID+E +E +VD++ K G + A + + ++ +W + +
Sbjct: 375 LDLGKWVHSYIDKER-VEVDCILNTALVDMYAKCGDINAAGRLF-IEAISRDICMWNAII 432
Query: 327 AACKEHKQFDMAERVIKQALRM-VKPEN 353
H + A + + R VKP +
Sbjct: 433 TGFAMHGYGEEALDIFAEMERQGVKPND 460
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 102/231 (44%), Gaps = 13/231 (5%)
Query: 113 ASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSA 172
A W+ +I +Y L ++ ++ + D +VL C + L GK
Sbjct: 90 AQWNFVITSYTKRNQPRNALNVYAQLRKMD-FEVDNFMAPSVLKACGQVSWTQL--GKEI 146
Query: 173 HGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
HGF++K + + + L+ MY +C ++YA +VF+ M ER+V+SW+ +I +
Sbjct: 147 HGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEF 206
Query: 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG- 291
+ AL L M V+P+E+ ++ T + G+ + + E H G
Sbjct: 207 DMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNE----HMGV 262
Query: 292 ----CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
++D++ K G L A ++ + + V+ W + +A C + + A
Sbjct: 263 PTTTALLDMYAKCGHLGLARQLFNGL-TQKTVVSWTAMIAGCIRSNRLEEA 312
>gi|15234044|ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098703|sp|O49399.2|PP321_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18840
gi|5738365|emb|CAA16741.2| putative protein [Arabidopsis thaliana]
gi|7268678|emb|CAB78886.1| putative protein [Arabidopsis thaliana]
gi|332658697|gb|AEE84097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 545
Score = 267 bits (683), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 146/421 (34%), Positives = 229/421 (54%), Gaps = 36/421 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F +M V D +S +LK+C F +H +K G ++ V+V +L++
Sbjct: 125 LTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNV 184
Query: 61 YVVTSF--------------------------------GFARKLFDELPERNAVTWNTMI 88
Y + + AR LFDE+ ERN +WN MI
Sbjct: 185 YGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDEMEERNVESWNFMI 244
Query: 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ 148
GY+ +G V EA++ F+ MP+R+V SW+AM+ AY + G Y+ L++F +M+ + PD
Sbjct: 245 SGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDG 304
Query: 149 MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVF 208
T+ +VLS C+ LGS L G+ H +I K+ E+ +AT LVDMY+KCG + AL VF
Sbjct: 305 FTLVSVLSACASLGS--LSQGEWVHVYIDKHGIEIEGFLATALVDMYSKCGKIDKALEVF 362
Query: 209 ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
+R+V +W ++I + G +DAL +F M G KPN +TF GVL+AC H G++D
Sbjct: 363 RATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNHVGMLD 422
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
+ RK F+M+ Y +EP I+HYGCMVDL G+ G +EEA E++ + + I+ S L A
Sbjct: 423 QARKLFEMMSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELVNEIPADEASILLESLLGA 482
Query: 329 CKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRK 388
CK Q + AER+ + L + ++ G + + +LY + +WE R+ M + V +
Sbjct: 483 CKRFGQLEQAERIANRLLELNLRDSSG--YAQMSNLYASDGRWEKVIDGRRNMRAERVNR 540
Query: 389 A 389
+
Sbjct: 541 S 541
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 94/410 (22%), Positives = 170/410 (41%), Gaps = 58/410 (14%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L + + + + S + + IL +LT I H+ +LK G + A+ L+
Sbjct: 21 LRLLQKENLKKMSVCSSTPVPILSFTERAKSLTEIQQAHAFMLKTGLFHDTFSASKLV-A 79
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ T+ PE V++ A R+ N + +++I
Sbjct: 80 FAATN-----------PEPKTVSY---------------AHSILNRIGSPNGFTHNSVIR 113
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
AY N+ + L +FREM+ + PD+ + VL C+ G G+ HG +K+
Sbjct: 114 AYANSSTPEVALTVFREMLLGP-VFPDKYSFTFVLKACAAF--CGFEEGRQIHGLFIKSG 170
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ + LV++Y + G+ + A V + M R+ +SW +L+ +G ++A +LF+
Sbjct: 171 LVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFD 230
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP--RIQHYGCMVDLFG 298
M+ V+ +G A GLV E ++ F D P + + MV +
Sbjct: 231 EMEERNVESWNFMISGYAAA----GLVKEAKEVF-------DSMPVRDVVSWNAMVTAYA 279
Query: 299 KAGFLEEAYEVIRTM----RLEPNVIIWGSFLAACKEHKQFDMAE----RVIKQALRMVK 350
G E EV M +P+ S L+AC E + K +
Sbjct: 280 HVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGI---- 335
Query: 351 PENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLSV 400
E +G + T + D+Y+ K + A V + ++V + +S+IS LSV
Sbjct: 336 -EIEGFLATALVDMYSKCGKIDKALEVFRATSKRDV--STWNSIISDLSV 382
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 267 bits (683), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 141/401 (35%), Positives = 234/401 (58%), Gaps = 19/401 (4%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSH-ILKLGFISHVYVATSLLHE 60
+++M R V SF+ + K+C N+ + +H+ IL GF S +YV S++
Sbjct: 128 NFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDL 187
Query: 61 YVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
YV F G ARK+FDE+ ER+ V+W +I Y+K G++ A F+ +P +++ +W+AM+
Sbjct: 188 YVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMV 247
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y G L+ F++M + G+ D++T+ V+S C+ LG+V H +++
Sbjct: 248 TGYAQNGRPKEALEYFQKM-QDVGMETDEVTLAGVISACAQLGAV-------KHANWIRD 299
Query: 180 EWEL-------NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
E N + + L+DMY+KCG A VFE+M+ERNV S++++I G A G +
Sbjct: 300 IAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRA 359
Query: 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC 292
AL LF M T ++PN++TF G+L+AC H GLV++GR+ F +++ + + P HY C
Sbjct: 360 HSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYAC 419
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE 352
MVDL G+AG LEEA ++++TM +EPN +WG+ L AC+ H D+A+ + L ++P
Sbjct: 420 MVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQ-IAANELFKLEP- 477
Query: 353 NDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
N G + L+ ++Y +WE ++RK++ + +K G S
Sbjct: 478 NGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCS 518
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 91/373 (24%), Positives = 156/373 (41%), Gaps = 77/373 (20%)
Query: 17 FSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSL---LHEYVVTSFGFARKLF 73
+ ++ IL CT F+ I +H+HI++ G YV T L L + V + +F
Sbjct: 43 WRLMSILHDCTLFSQ---IKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVF 99
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
++ N W MI+GY+ G + E+ +F+ RM
Sbjct: 100 GQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRM-------------------------- 133
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG-FIVKNEWELNEQIATILV 192
+G+ P T A+ C ++ + +GK H I+ + + + ++
Sbjct: 134 ------RRDGVGPVSFTFSALFKACG--AALNMDLGKQVHAQTILIGGFASDLYVGNSMI 185
Query: 193 DMYAKCGFLKYALMVFELMEERNVIS-------------------------------WTA 221
D+Y KCGFL A VF+ M ER+V+S WTA
Sbjct: 186 DLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTA 245
Query: 222 LICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY 281
++ G A G ++AL F+ MQ G++ +E+T GV++AC G V + + I E
Sbjct: 246 MVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHA-NWIRDIAERS 304
Query: 282 DLEP--RIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAE 339
P + ++D++ K G +EAY+V M+ E NV + S + H + A
Sbjct: 305 GFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMK-ERNVFSYSSMILGYAMHGRAHSAL 363
Query: 340 RVIKQALRM-VKP 351
++ L+ ++P
Sbjct: 364 QLFHDMLKTEIRP 376
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 82/203 (40%), Gaps = 8/203 (3%)
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFL--KYALMVFELMEERNVISWTALICGSA 227
K H I++N + T L+ M K Y L+VF + N WTA+I G A
Sbjct: 59 KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYA 118
Query: 228 HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRI 287
+G ++ + + M+ GV P TF+ + AC +D G++ +
Sbjct: 119 LQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDL 178
Query: 288 QHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALR 347
M+DL+ K GFL A +V M E +V+ W + A ++ + A +
Sbjct: 179 YVGNSMIDLYVKCGFLGCARKVFDEMS-ERDVVSWTELIVAYAKYGDMESASGLFDDL-- 235
Query: 348 MVKPENDGGVFTLICDLYTMNEK 370
P D +T + Y N +
Sbjct: 236 ---PSKDMVAWTAMVTGYAQNGR 255
>gi|296083752|emb|CBI23741.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 267 bits (683), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 138/397 (34%), Positives = 228/397 (57%), Gaps = 6/397 (1%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
QLF+QM V D F++ + K + L +H +++GF+S VA S++ Y
Sbjct: 110 QLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMY 169
Query: 62 V-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+F +RK+FDE+ RN+ +WN +I GY+ SGN+ R F+RM RNV SW+AMI
Sbjct: 170 CKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNLVVGRRVFDRMKCRNVFSWTAMIN 229
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y+ G D L LFR+M +G+ P+++++ +VL CS GLL G+ HGF V+ E
Sbjct: 230 GYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFS--GLLSGRQIHGFAVRKE 287
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEE-RNVISWTALICGSAHRGYSEDALSLF 239
+ L+DMY+KCG L A VFE ++ ISW+++I G G ++A+ L+
Sbjct: 288 LNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLY 347
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+ M G++P+ +T G+L+AC +GLV+EG + + +Y +EP ++ + C+VD+ G+
Sbjct: 348 DKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVDMLGR 407
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG L+ A + I+ M +EP +WG+ ++ H +M E + +++ +PEN +
Sbjct: 408 AGQLDPALDFIKAMPVEPGPSVWGALVSCSIIHGDLEMQELAYRFLIQL-EPENPSN-YV 465
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
I +LY + +W+ VR++M ++ +RK G S IS
Sbjct: 466 SISNLYASSRRWDAVAEVRRMMKDKRLRKVPGCSWIS 502
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 160/371 (43%), Gaps = 69/371 (18%)
Query: 16 SFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGF-ARKLFD 74
S ++L L +L + HS IL LG + +AT L+ Y + + +R +FD
Sbjct: 23 SLALLQSLHFSVTHKSLKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFD 82
Query: 75 ELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKL 134
L +N WN++I GY+K+ R+ Y+ +L
Sbjct: 83 SLQHKNVFLWNSLINGYAKN-----------RL--------------------YNEAFQL 111
Query: 135 FREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDM 194
F +M S++ L PD T+ + S LG+ L GKS HG ++ + + +A ++ M
Sbjct: 112 FNQMCSSDVL-PDDFTLSTLSKVSSELGA--LFSGKSIHGKSIRIGFVSDTVVANSIMSM 168
Query: 195 YAKCGFLK-----------------------YAL--------MVFELMEERNVISWTALI 223
Y KCG + YA+ VF+ M+ RNV SWTA+I
Sbjct: 169 YCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNLVVGRRVFDRMKCRNVFSWTAMI 228
Query: 224 CGSAHRGYSEDALSLFEMMQAT-GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD 282
G G S++ALSLF MQ G++PN ++ VL AC + GR+ + +
Sbjct: 229 NGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRK-E 287
Query: 283 LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVI 342
L + ++D++ K G L+ A V L + I W S ++ H + A +
Sbjct: 288 LNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLY 347
Query: 343 KQALRM-VKPE 352
+ L+ ++P+
Sbjct: 348 DKMLQAGIRPD 358
>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 591
Score = 267 bits (683), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 140/394 (35%), Positives = 231/394 (58%), Gaps = 11/394 (2%)
Query: 6 QMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VT 64
QM P+++ +++ L +C NL + +H +I ++ + + +LL Y
Sbjct: 201 QMESNEKPNEA-TVVSTLSACAVLRNLELGKEIHDYIANELDLTPI-MGNALLDMYCKCG 258
Query: 65 SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLN 124
AR++FD + +N W +M+ GY G + +AR FER P R+V W+AMI Y+
Sbjct: 259 CVSVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQARYLFERSPSRDVVLWTAMINGYVQ 318
Query: 125 AGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN 184
++ + LF EM G+ PD+ + +L+GC+ LG+ L GK H +I +N +++
Sbjct: 319 FNHFEDAIALFGEM-QIRGVEPDKFIVVTLLTGCAQLGA--LEQGKWIHNYIDENRIKMD 375
Query: 185 EQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQA 244
++T L++MYAKCG ++ +L +F +++ + SWT++ICG A G + +AL LFE MQ
Sbjct: 376 AVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTSWTSIICGLAMNGKTSEALELFEAMQT 435
Query: 245 TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLE 304
G+KP+++TF VL+AC H GLV+EGRK F + Y +EP ++HYGC +DL G+AG L+
Sbjct: 436 CGLKPDDITFVAVLSACGHAGLVEEGRKLFHSMSSIYHIEPNLEHYGCFIDLLGRAGLLQ 495
Query: 305 EAYEVIRTMRLEPNVII---WGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
EA E+++ + + N II +G+ L+AC+ + DM ER + AL VK +D + TL+
Sbjct: 496 EAEELVKKLPDQNNEIIVPLYGALLSACRTYGNIDMGER-LATALAKVK-SSDSSLHTLL 553
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+Y ++WE +VR M + ++K G S I
Sbjct: 554 ASIYASADRWEDVRKVRSKMKDLGIKKVPGYSAI 587
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/365 (26%), Positives = 162/365 (44%), Gaps = 78/365 (21%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF Q+ + V D+++ ++LK + +H+ ++K G YV SL+
Sbjct: 93 ISLFQQLRERGVWPDNYTYPYVLKGIGCIGEVREGEKIHAFVVKTGLEFDPYVCNSLMDM 152
Query: 61 YVVTSF--GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y GF ++F+E+PER+AV+WN MI GY + EA D + RM
Sbjct: 153 YAELGLVEGFT-QVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVYRRM----------- 200
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
+M SNE P++ T+ + LS C+ L + L +GK H +I
Sbjct: 201 ------------------QMESNE--KPNEATVVSTLSACAVLRN--LELGKEIHDYIA- 237
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELM--------------------------- 211
NE +L + L+DMY KCG + A +F+ M
Sbjct: 238 NELDLTPIMGNALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQARYL 297
Query: 212 ----EERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
R+V+ WTA+I G + EDA++LF MQ GV+P++ +LT C G +
Sbjct: 298 FERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGAL 357
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYG----CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWG 323
++G+ IDE RI+ +++++ K G +E++ E+ ++ + + W
Sbjct: 358 EQGKWIHNYIDEN-----RIKMDAVVSTALIEMYAKCGCIEKSLEIFNGLK-DMDTTSWT 411
Query: 324 SFLAA 328
S +
Sbjct: 412 SIICG 416
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 92/359 (25%), Positives = 157/359 (43%), Gaps = 49/359 (13%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDEL 76
+ +LKSC + L + +HI G + L+ + +S G +A ++F+ +
Sbjct: 12 ISLLKSCKSMSQL---KQIQAHIFCFGLQQDRDILNKLMAFSMDSSLGDFNYANRIFNHI 68
Query: 77 PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFR 136
+ +N MIK + K G+ LR+ S LF+
Sbjct: 69 HHPSLFIYNLMIKAFVKRGS------------LRSAIS-------------------LFQ 97
Query: 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA 196
++ G+ PD T VL G +G V G+ H F+VK E + + L+DMYA
Sbjct: 98 QL-RERGVWPDNYTYPYVLKGIGCIGEV--REGEKIHAFVVKTGLEFDPYVCNSLMDMYA 154
Query: 197 KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQ-ATGVKPNEMTFT 255
+ G ++ VFE M ER+ +SW +I G E+A+ ++ MQ + KPNE T
Sbjct: 155 ELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVYRRMQMESNEKPNEATVV 214
Query: 256 GVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRL 315
L+AC ++ G++ I E DL P + + ++D++ K G + A E+ M +
Sbjct: 215 STLSACAVLRNLELGKEIHDYIANELDLTPIMGN--ALLDMYCKCGCVSVAREIFDAMIV 272
Query: 316 EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGA 374
+ NV W S + Q D A + +++ P D ++T + + Y +E A
Sbjct: 273 K-NVNCWTSMVTGYVICGQLDQARYLFERS-----PSRDVVLWTAMINGYVQFNHFEDA 325
>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 596
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 142/401 (35%), Positives = 231/401 (57%), Gaps = 46/401 (11%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFIS-HVYVATSLLH 59
M F +M + V ++ +++ +LK+ ++ +H L+ G + V++ +SL+
Sbjct: 189 MVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVD 248
Query: 60 EY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y + + A+K+FDE MP RNV +W+A+
Sbjct: 249 MYGKCSCYDDAQKVFDE-------------------------------MPSRNVVTWTAL 277
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
IA Y+ + +D G+ +F EM+ ++ + P++ T+ +VLS C+H+G+ L G+ H +++K
Sbjct: 278 IAGYVQSRCFDKGMLVFEEMLKSD-VAPNEKTLSSVLSACAHVGA--LHRGRRVHCYMIK 334
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
N E+N T L+D+Y KCG L+ A++VFE + E+NV +WTA+I G A GY+ DA L
Sbjct: 335 NSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDL 394
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F M ++ V PNE+TF VL+AC H GLV+EGR+ F + +++EP+ HY CMVDLFG
Sbjct: 395 FYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFG 454
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDM----AERVIKQALRMVKPEND 354
+ G LEEA +I M +EP ++WG+ +C HK +++ A RVIK ++P +
Sbjct: 455 RKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIK-----LQPSHS 509
Query: 355 GGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G +TL+ +LY+ ++ W+ RVRK M +Q V K+ G S I
Sbjct: 510 GR-YTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWI 549
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 124/250 (49%), Gaps = 8/250 (3%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
N++I GYS SG A F+ ++V +W+AMI ++ G+ + F EM G+
Sbjct: 142 NSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEM-KKTGV 200
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHG-FIVKNEWELNEQIATILVDMYAKCGFLKY 203
++MT+ +VL + V G+S HG ++ + + I + LVDMY KC
Sbjct: 201 AANEMTVVSVLKAAGKVEDVRF--GRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDD 258
Query: 204 ALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263
A VF+ M RNV++WTALI G + + +FE M + V PNE T + VL+AC H
Sbjct: 259 AQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAH 318
Query: 264 TGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
G + GR+ + MI +E ++DL+ K G LEEA V + E NV W
Sbjct: 319 VGALHRGRRVHCYMIKNS--IEINTTAGTTLIDLYVKCGCLEEAILVFERLH-EKNVYTW 375
Query: 323 GSFLAACKEH 332
+ + H
Sbjct: 376 TAMINGFAAH 385
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 110/250 (44%), Gaps = 7/250 (2%)
Query: 100 ARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKL--FREMISNEGLTPDQMTIGAVLSG 157
AR ++ ++ W ++I + + L +R M N G+ P + T +L
Sbjct: 55 ARRLLCQLQTLSIQLWDSLIGHFSGGITLNRRLSFLAYRHMRRN-GVIPSRHTFPPLLKA 113
Query: 158 CSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVI 217
L H IVK + + + L+ Y+ G +A +F+ E+++V+
Sbjct: 114 VFKLRDSNPF---QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVV 170
Query: 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI 277
+WTA+I G G + +A+ F M+ TGV NEMT VL A V GR +
Sbjct: 171 TWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLY 230
Query: 278 DEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDM 337
E ++ + +VD++GK ++A +V M NV+ W + +A + + FD
Sbjct: 231 LETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMP-SRNVVTWTALIAGYVQSRCFDK 289
Query: 338 AERVIKQALR 347
V ++ L+
Sbjct: 290 GMLVFEEMLK 299
>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g22690-like [Glycine max]
Length = 836
Score = 267 bits (682), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 139/394 (35%), Positives = 233/394 (59%), Gaps = 6/394 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+ +M ++ D ++L + +C +L+V H+++L+ G ++ +++ Y+
Sbjct: 319 ILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYM 378
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
A K+F+ +P + VTWN++I G + G++ A F+ M R++ SW+ MI A
Sbjct: 379 KCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGA 438
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
+ ++ ++LFREM N+G+ D++T+ + S C +LG++ L K +I KN+
Sbjct: 439 LVQVSMFEEAIELFREM-QNQGIPGDRVTMVGIASACGYLGALDL--AKWVCTYIEKNDI 495
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
++ Q+ T LVDM+++CG A+ VF+ ME+R+V +WTA I A G +E A+ LF
Sbjct: 496 HVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNE 555
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M VKP+++ F +LTAC H G VD+GR+ F +++ + + P I HYGCMVDL G+AG
Sbjct: 556 MLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAG 615
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
LEEA ++I++M +EPN ++WGS LAAC++HK ++A ++ L + PE G+ L+
Sbjct: 616 LLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEK-LTQLAPER-VGIHVLL 673
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y KW RVR M + V+K GSS I
Sbjct: 674 SNIYASAGKWTDVARVRLQMKEKGVQKVPGSSSI 707
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 88/347 (25%), Positives = 153/347 (44%), Gaps = 41/347 (11%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ QM + D ++ +L +C+ L+ +H +LK+G ++V+ SL+H Y
Sbjct: 117 LYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYA 176
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
RKLFD + ERN V+W ++I GYS RD +
Sbjct: 177 ECGKVDLGRKLFDGMLERNVVSWTSLINGYS-------GRDLSKE--------------- 214
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
+ LF +M G+ P+ +T+ V+S C+ L L +GK +I +
Sbjct: 215 ---------AVSLFFQM-GEAGVEPNPVTMVCVISACAKLKD--LELGKKVCSYISELGM 262
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
EL+ + LVDMY KCG + A +F+ +N++ + ++ H ++ D L + +
Sbjct: 263 ELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDE 322
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M G +P+++T + AC G + G+ + LE ++D++ K G
Sbjct: 323 MLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRN-GLEGWDNISNAIIDMYMKCG 381
Query: 302 FLEEAYEVIRTMRLEPN--VIIWGSFLAACKEHKQFDMAERVIKQAL 346
E A +V M PN V+ W S +A ++A R+ + L
Sbjct: 382 KREAACKVFEHM---PNKTVVTWNSLIAGLVRDGDMELAWRIFDEML 425
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 110/202 (54%), Gaps = 7/202 (3%)
Query: 111 NVAS---WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL 167
N+AS ++ +I Y +AG D + L+ +M+ G+ PD+ T +LS CS + + L
Sbjct: 91 NMASLFMYNCLIRGYASAGLGDQAILLYVQMLV-MGIVPDKYTFPFLLSACSKI--LALS 147
Query: 168 MGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSA 227
G HG ++K E + ++ L+ YA+CG + +F+ M ERNV+SWT+LI G +
Sbjct: 148 EGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYS 207
Query: 228 HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRI 287
R S++A+SLF M GV+PN +T V++AC ++ G+K I E +E
Sbjct: 208 GRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYI-SELGMELST 266
Query: 288 QHYGCMVDLFGKAGFLEEAYEV 309
+VD++ K G + A ++
Sbjct: 267 IMVNALVDMYMKCGDICAARQI 288
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 110/257 (42%), Gaps = 49/257 (19%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF +M Q +P D +++ I +C + L + + ++I K + + T+L
Sbjct: 449 IELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTAL--- 505
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ +S+ G+ A F+RM R+V++W+A I
Sbjct: 506 ---------------------------VDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIG 538
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVG-----LLMGKSAHGF 175
G + ++LF EM+ + + PD + A+L+ CSH GSV + AHG
Sbjct: 539 VMAMEGNTEGAIELFNEMLEQK-VKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHG- 596
Query: 176 IVKNEWELNEQIA--TILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYS 232
+ I +VD+ + G L+ A+ + + M E N + W +L+ +A R +
Sbjct: 597 -------IRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLL--AACRKHK 647
Query: 233 EDALSLFEMMQATGVKP 249
L+ + + T + P
Sbjct: 648 NVELAHYAAEKLTQLAP 664
>gi|359489007|ref|XP_002278681.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 663
Score = 267 bits (682), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 141/402 (35%), Positives = 236/402 (58%), Gaps = 10/402 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFN-NLTVI---HHLHSHILKLGFISHVYVATS 56
+QLF+QM R V D F+ +LK + +L +I +H +LKLGF H++V +
Sbjct: 267 VQLFNQMRRNCVDPDGFTFTFLLKGRSRMRIDLPLIVASDEIHGAVLKLGFCFHLFVMNA 326
Query: 57 LLHEYVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASW 115
L+H Y A ++F+E+ + V+W+ ++ + ++G + AR F MP R+V SW
Sbjct: 327 LIHLYAARGVPAAAHQVFNEMVGADVVSWSGLVVAHVRAGELELARQVFYEMPERDVVSW 386
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
+ M++ Y A L+LFREM + G+ PD++ + +V+S C+ LG L G H +
Sbjct: 387 TVMVSGYAQAKRSREALELFREM-RDVGVRPDEVAMVSVISACTSLGD--LETGFEVHRY 443
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
I +N + + L+DMYAKCG + A VF ME +++I+W ++I A+ G +EDA
Sbjct: 444 IDENGFGWMVSLCNALIDMYAKCGCMDLAWQVFNNMERKSLITWNSMISACANHGNAEDA 503
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
+F +M +G++P+ +TF +LTA H G VD+G F+ + +Y +E ++HYGCMVD
Sbjct: 504 FRVFTLMLYSGIRPDGVTFLALLTAYTHKGWVDDGYGLFESMQRDYGVEAGVEHYGCMVD 563
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
+ G+AG LEEAY++I +M + N ++WG+ LAAC+ + +M ERV+K+ + + KP ++G
Sbjct: 564 MLGRAGRLEEAYKLITSMSMPCNDVVWGALLAACRIYGDVEMGERVLKKLIEL-KP-DEG 621
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
G + L+ D+Y + A +R+ M +K G S + +
Sbjct: 622 GYYILLRDIYVAAGRRAEAIELRRAMDVNGAKKTLGCSWVGA 663
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 100/364 (27%), Positives = 164/364 (45%), Gaps = 28/364 (7%)
Query: 16 SFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKL 72
S S+ + ++C L +IH L + H V + V+ G +A +L
Sbjct: 182 SQSLASMAEACLTMQALKLIHAL---AFRANLHHHALVLAKIFRFAAVSPNGCLHYADRL 238
Query: 73 FDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGL 132
F ++ + N +NT+I+GYSKS + ++ F +M RN +L G +
Sbjct: 239 FSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMR-RNCVDPDGFTFTFLLKGRSRMRI 297
Query: 133 KLFREMISNEGLTPDQMTIGAV--LSGCSHLGSVGLLMG-KSAHGFIVKNEWELNEQIA- 188
L + S+E GAV L C HL + L+ +A G NE +
Sbjct: 298 DLPLIVASDE-------IHGAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVGA 350
Query: 189 -----TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQ 243
+ LV + + G L+ A VF M ER+V+SWT ++ G A S +AL LF M+
Sbjct: 351 DVVSWSGLVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSREALELFREMR 410
Query: 244 ATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFL 303
GV+P+E+ V++AC G ++ G + + IDE + ++D++ K G +
Sbjct: 411 DVGVRPDEVAMVSVISACTSLGDLETGFEVHRYIDEN-GFGWMVSLCNALIDMYAKCGCM 469
Query: 304 EEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-VKPENDGGVFTLIC 362
+ A++V M ++I W S ++AC H + A RV L ++P DG F +
Sbjct: 470 DLAWQVFNNME-RKSLITWNSMISACANHGNAEDAFRVFTLMLYSGIRP--DGVTFLALL 526
Query: 363 DLYT 366
YT
Sbjct: 527 TAYT 530
>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
Length = 638
Score = 267 bits (682), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 141/394 (35%), Positives = 226/394 (57%), Gaps = 6/394 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY- 61
LF +M RQ D F+++ +L +C+ NL + +H +L G + + ++L+ Y
Sbjct: 200 LFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLILESALVDMYG 259
Query: 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
AR+ F+ +P ++ V+W +M+ +K G+V AR +F+ MP RN+ SW+AMI+
Sbjct: 260 KCGDLWMARRCFEMMPIKSVVSWTSMLCAQTKHGSVNAARCWFDHMPERNIVSWNAMISC 319
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ G L L+ +M S +GL PD++T+ AVLS +G L +GK H +I N +
Sbjct: 320 YVQRGQCHEALDLYNQMQS-QGLAPDEITLVAVLSASGRIGD--LTVGKMVHLYIRDNIY 376
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ + L+DMYAKCG + A+ +F M RNV+SW +I G A G + D ++ F
Sbjct: 377 NPDVSLVNSLLDMYAKCGQVDTAISLFSEMCNRNVVSWNVIIGGLAMHGRALDTITFFRS 436
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M P+ +TF +L+AC H GL++ G+ YF+ + Y+++ ++HY CMVDL G+ G
Sbjct: 437 MVTDSFAPDGITFVALLSACSHGGLLETGQHYFESMRHVYNVKHEVEHYACMVDLLGRRG 496
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
LE+A +I+ M ++P+V++WG+ L AC+ H + +VIKQ L + GG+F LI
Sbjct: 497 HLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGRQVIKQLLEL--EGISGGLFVLI 554
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+L +WE +R+RKLM RK G S I
Sbjct: 555 SNLLYETHQWEDMKRLRKLMKEWGTRKDMGVSSI 588
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/366 (25%), Positives = 160/366 (43%), Gaps = 68/366 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L M R+ + + F++ ++K+CT +H L+LG + V+V +LLH
Sbjct: 97 LRLHRGMLRRGILPNEFTLPFVVKACTIAQAREHALAVHGVALRLGLVGQVFVGNALLHS 156
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
Y + +G++ ++R FF+ M RNV SW++MI
Sbjct: 157 Y------------------------------ASAGSLGDSRRFFDEMVDRNVVSWNSMIG 186
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y AG LF EM +G D+ T+ ++L CS G+ L +G+ H ++ +
Sbjct: 187 GYAQAGDTREVCSLFGEM-RRQGFLEDEFTLVSLLIACSQEGN--LEIGRLVHCRMLVSG 243
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFEL------------------------------ 210
++ + + LVDMY KCG L A FE+
Sbjct: 244 SRVDLILESALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSMLCAQTKHGSVNAARCWFD 303
Query: 211 -MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
M ERN++SW A+I RG +AL L+ MQ+ G+ P+E+T VL+A G +
Sbjct: 304 HMPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVLSASGRIGDLTV 363
Query: 270 GRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
G+ + + D Y+ P + ++D++ K G ++ A + M NV+ W +
Sbjct: 364 GKMVHLYIRDNIYN--PDVSLVNSLLDMYAKCGQVDTAISLFSEM-CNRNVVSWNVIIGG 420
Query: 329 CKEHKQ 334
H +
Sbjct: 421 LAMHGR 426
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 118/246 (47%), Gaps = 7/246 (2%)
Query: 95 GNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAV 154
G +C AR F+ +P + ++ +I AY N+ L+L R M+ G+ P++ T+ V
Sbjct: 60 GVLCHARRLFDGIPGPDRVMYNTIIRAYCNSSCPREALRLHRGML-RRGILPNEFTLPFV 118
Query: 155 LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER 214
+ C+ + + + HG ++ + L+ YA G L + F+ M +R
Sbjct: 119 VKACTIAQAREHAL--AVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDR 176
Query: 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR-KY 273
NV+SW ++I G A G + + SLF M+ G +E T +L AC G ++ GR +
Sbjct: 177 NVVSWNSMIGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVH 236
Query: 274 FKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHK 333
+M+ ++ ++ +VD++GK G L A M ++ +V+ W S L A +H
Sbjct: 237 CRMLVSGSRVDLILE--SALVDMYGKCGDLWMARRCFEMMPIK-SVVSWTSMLCAQTKHG 293
Query: 334 QFDMAE 339
+ A
Sbjct: 294 SVNAAR 299
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 99/228 (43%), Gaps = 41/228 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L++QM Q + D +++ +L + +LTV +H +I + V + SLL
Sbjct: 330 LDLYNQMQSQGLAPDEITLVAVLSASGRIGDLTVGKMVHLYIRDNIYNPDVSLVNSLLDM 389
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A LF E+ RN V+WN +I G + G + F
Sbjct: 390 YAKCGQVDTAISLFSEMCNRNVVSWNVIIGGLAMHGRALDTITF---------------- 433
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF-IVK 178
FR M+++ PD +T A+LS CSH G L+ H F ++
Sbjct: 434 ---------------FRSMVTDS-FAPDGITFVALLSACSH----GGLLETGQHYFESMR 473
Query: 179 NEWELNEQIA--TILVDMYAKCGFLKYAL-MVFELMEERNVISWTALI 223
+ + + ++ +VD+ + G L+ A+ ++ E+ + +V+ W AL+
Sbjct: 474 HVYNVKHEVEHYACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALL 521
>gi|296082950|emb|CBI22251.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 267 bits (682), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 141/402 (35%), Positives = 236/402 (58%), Gaps = 10/402 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFN-NLTVI---HHLHSHILKLGFISHVYVATS 56
+QLF+QM R V D F+ +LK + +L +I +H +LKLGF H++V +
Sbjct: 80 VQLFNQMRRNCVDPDGFTFTFLLKGRSRMRIDLPLIVASDEIHGAVLKLGFCFHLFVMNA 139
Query: 57 LLHEYVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASW 115
L+H Y A ++F+E+ + V+W+ ++ + ++G + AR F MP R+V SW
Sbjct: 140 LIHLYAARGVPAAAHQVFNEMVGADVVSWSGLVVAHVRAGELELARQVFYEMPERDVVSW 199
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
+ M++ Y A L+LFREM + G+ PD++ + +V+S C+ LG L G H +
Sbjct: 200 TVMVSGYAQAKRSREALELFREM-RDVGVRPDEVAMVSVISACTSLGD--LETGFEVHRY 256
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
I +N + + L+DMYAKCG + A VF ME +++I+W ++I A+ G +EDA
Sbjct: 257 IDENGFGWMVSLCNALIDMYAKCGCMDLAWQVFNNMERKSLITWNSMISACANHGNAEDA 316
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
+F +M +G++P+ +TF +LTA H G VD+G F+ + +Y +E ++HYGCMVD
Sbjct: 317 FRVFTLMLYSGIRPDGVTFLALLTAYTHKGWVDDGYGLFESMQRDYGVEAGVEHYGCMVD 376
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
+ G+AG LEEAY++I +M + N ++WG+ LAAC+ + +M ERV+K+ + + KP+ +G
Sbjct: 377 MLGRAGRLEEAYKLITSMSMPCNDVVWGALLAACRIYGDVEMGERVLKKLIEL-KPD-EG 434
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
G + L+ D+Y + A +R+ M +K G S + +
Sbjct: 435 GYYILLRDIYVAAGRRAEAIELRRAMDVNGAKKTLGCSWVGA 476
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 160/356 (44%), Gaps = 28/356 (7%)
Query: 24 KSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDELPERN 80
++C L +IH L + H V + V+ G +A +LF ++ + N
Sbjct: 3 EACLTMQALKLIHAL---AFRANLHHHALVLAKIFRFAAVSPNGCLHYADRLFSQIHQPN 59
Query: 81 AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMIS 140
+NT+I+GYSKS + ++ F +M RN +L G + L + S
Sbjct: 60 TFFYNTLIRGYSKSSSPSQSVQLFNQMR-RNCVDPDGFTFTFLLKGRSRMRIDLPLIVAS 118
Query: 141 NEGLTPDQMTIGAV--LSGCSHLGSVGLLMG-KSAHGFIVKNEWELNEQIA------TIL 191
+E GAV L C HL + L+ +A G NE + + L
Sbjct: 119 DE-------IHGAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVGADVVSWSGL 171
Query: 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE 251
V + + G L+ A VF M ER+V+SWT ++ G A S +AL LF M+ GV+P+E
Sbjct: 172 VVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDE 231
Query: 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR 311
+ V++AC G ++ G + + IDE + ++D++ K G ++ A++V
Sbjct: 232 VAMVSVISACTSLGDLETGFEVHRYIDEN-GFGWMVSLCNALIDMYAKCGCMDLAWQVFN 290
Query: 312 TMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-VKPENDGGVFTLICDLYT 366
M ++I W S ++AC H + A RV L ++P DG F + YT
Sbjct: 291 NME-RKSLITWNSMISACANHGNAEDAFRVFTLMLYSGIRP--DGVTFLALLTAYT 343
>gi|212723118|ref|NP_001131685.1| hypothetical protein [Zea mays]
gi|194692242|gb|ACF80205.1| unknown [Zea mays]
gi|414879040|tpg|DAA56171.1| TPA: hypothetical protein ZEAMMB73_730680 [Zea mays]
Length = 590
Score = 267 bits (682), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 129/327 (39%), Positives = 204/327 (62%), Gaps = 5/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR+LFD++PER+ V WN+MI GY++ G + EAR FE MP RNV SWS +I +++ G
Sbjct: 233 ARELFDQMPERDLVCWNSMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVSCGEA 292
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L+ F+ M+ GL PD++ +S C+ LG+ L G+ H ++ K + + +
Sbjct: 293 KEALEYFQSMLRC-GLRPDRIAAVGAVSACAQLGA--LEQGRWLHSYLEKKKLLSDVVVQ 349
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
T L+DMY KCG L A+++FE M ER+V++W +I G G+ DA++LF M+A V
Sbjct: 350 TALIDMYVKCGCLDLAMLIFESMAERSVVTWNVMIVGLGTHGFGLDAVTLFHRMEAESVA 409
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
++++ G+LTAC H GLV EG + F + +++ ++P+++HYG +VDL G+AG L++A
Sbjct: 410 VDDLSVLGMLTACTHAGLVSEGLEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQARH 469
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
I TM +EP +WGS LAAC+ H ++AE +++ + +D GV+ L+ ++Y
Sbjct: 470 AIETMPMEPTPELWGSLLAACRSHSCVELAELSVERLADL--GADDSGVYVLLSNIYADE 527
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
W R+RKLM ++ +RK G SVI
Sbjct: 528 GMWGDVLRIRKLMSDEGMRKDIGRSVI 554
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 98/241 (40%), Gaps = 24/241 (9%)
Query: 104 FERMPL---RNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSH 160
F R+PL R+ +W+ I L+A A L+ + G+ PD T AVL C
Sbjct: 68 FARLPLPAARDPFAWNTAI--RLHAPARPRAALLYFARMRRCGVRPDAYTFPAVLKACG- 124
Query: 161 LGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME--ERNVIS 218
+ G G H V+ + L+ Y + ++ VF+ R+++S
Sbjct: 125 -CAPGCRAGLLVHAEAVRRGLAADLFTVNALISFYCRILDIRSGRKVFDEAGGVSRDLVS 183
Query: 219 WTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMID 278
W +++ G G A +F+ M P + TF+ A + G +G
Sbjct: 184 WNSMVAGYVGCGEMGLAQEMFDEM------PQKDTFS---WATLIDGYGKQGGAGVDRAR 234
Query: 279 EEYDLEPR--IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL---AACKEHK 333
E +D P + + M+D + + G ++EA + M E NVI W + +C E K
Sbjct: 235 ELFDQMPERDLVCWNSMIDGYARHGRMDEARSLFEEMP-ERNVISWSIVIDGHVSCGEAK 293
Query: 334 Q 334
+
Sbjct: 294 E 294
>gi|414879404|tpg|DAA56535.1| TPA: pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 544
Score = 267 bits (682), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 137/348 (39%), Positives = 206/348 (59%), Gaps = 7/348 (2%)
Query: 51 VYVATSLLHEYVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL 109
V T L+ YV AR++FD +P RNA W++M+ GY K+G+ EAR F+R+P
Sbjct: 186 VVTWTVLVQGYVCAGDMETAREVFDRMPARNAFVWSSMVTGYFKAGDAEEARAVFDRIPT 245
Query: 110 RNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMG 169
RN+ +W+A+IA Y G + L+ F M+ E + PD+ T+ ++LS C+ LGS L G
Sbjct: 246 RNLVNWNALIAGYAQIGCSEQALEAFHLML-QERVKPDEFTMASLLSACAQLGS--LEQG 302
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR 229
K H FI + N + L+DMYAKCG L +A +F+ M +N W +I A
Sbjct: 303 KKVHDFINQEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDSMRWKNNECWNTMISALASH 362
Query: 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQH 289
G S++AL LF M+ +G KPN +T VL AC H G VDEG + F +D Y +E ++H
Sbjct: 363 GQSDEALHLFFQMERSGRKPNTITVLAVLGACTHGGFVDEGLQIFNKLD-AYGVEAGVEH 421
Query: 290 YGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM- 348
YGC+VDL G+AG L+EAYE++ M EPN +IWGS L AC+ H+ +M+ V ++ LR+
Sbjct: 422 YGCLVDLLGRAGKLKEAYEIVNNMSEEPNEVIWGSLLGACRVHRDAEMSRLVTEEILRLH 481
Query: 349 -VKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++ + ++ ++ +E+WE AE++R+ M + V K G S +
Sbjct: 482 SFHASSNDAEYIMLANIMAASERWEQAEQMRRKMARRGVEKTPGCSSL 529
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 143/311 (45%), Gaps = 36/311 (11%)
Query: 79 RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM 138
R+ + T++ Y K G + +AR F+ MP RNV S++A++A Y AG D L LF M
Sbjct: 89 RDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVISYNALLAGYAVAGDMDGALALFGGM 148
Query: 139 ISNEGLTPDQMTIG---------------AVLSGCSHLGSVGLLMGKSAHGFIVKNEWEL 183
S +T + G A G + + +L+ G++ + E
Sbjct: 149 RSWTHVTWATLIRGFAEKGDMAEARRWFEATPPGMRTVVTWTVLV----QGYVCAGDMET 204
Query: 184 -----------NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
N + + +V Y K G + A VF+ + RN+++W ALI G A G S
Sbjct: 205 AREVFDRMPARNAFVWSSMVTGYFKAGDAEEARAVFDRIPTRNLVNWNALIAGYAQIGCS 264
Query: 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHY-- 290
E AL F +M VKP+E T +L+AC G +++G+K I++E+ R H+
Sbjct: 265 EQALEAFHLMLQERVKPDEFTMASLLSACAQLGSLEQGKKVHDFINQEH---IRKNHFVM 321
Query: 291 GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVK 350
++D++ K G L A + +MR + N W + ++A H Q D A + Q R +
Sbjct: 322 NGLIDMYAKCGDLAHARYIFDSMRWKNNE-CWNTMISALASHGQSDEALHLFFQMERSGR 380
Query: 351 PENDGGVFTLI 361
N V ++
Sbjct: 381 KPNTITVLAVL 391
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 8/182 (4%)
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
T Q + +L + L +GKS H +K+ + + + T +V MY KCG L A
Sbjct: 51 THHQPLLPVLLKAAAASSPAELGLGKSLHAEALKSAFARDLLVGTTIVSMYCKCGALADA 110
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
F+ M +RNVIS+ AL+ G A G + AL+LF M++ +T+ ++
Sbjct: 111 RRAFDEMPDRNVISYNALLAGYAVAGDMDGALALFGGMRSW----THVTWATLIRGFAEK 166
Query: 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324
G + E R++F+ + + +V + AG +E A EV M N +W S
Sbjct: 167 GDMAEARRWFEATPPGMRT---VVTWTVLVQGYVCAGDMETAREVFDRMPAR-NAFVWSS 222
Query: 325 FL 326
+
Sbjct: 223 MV 224
>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
Length = 631
Score = 267 bits (682), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 149/405 (36%), Positives = 229/405 (56%), Gaps = 18/405 (4%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF ++ + +P D+F++ ++K C + +H LK+GF S V+V SL++ Y
Sbjct: 103 LFHELVHEYLP-DNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYS 161
Query: 63 -VTSFGFARKLFDELPER-----------NAVTWNTMIKGYSKSGNVCEARDFFERMPLR 110
ARK+FD + ++ N V+WN MI GY KSG+ A + F +MP+
Sbjct: 162 KCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIW 221
Query: 111 NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGK 170
++ +W+ MIA Y G + +K+F M+ G P T+ +VLS S L +G G+
Sbjct: 222 DLVTWNLMIAGYELNGQFMDAVKMFFMMLK-LGSRPSHATLVSVLSAVSGLAVLG--KGR 278
Query: 171 SAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRG 230
H ++ KN +EL+ + T L++MYAKCG ++ AL VF ++++ V WTA+I G G
Sbjct: 279 WIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHG 338
Query: 231 YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHY 290
+ AL+LF M TG+KPN + F GVL AC H GLVD+GR+YF M+ EY +EP ++HY
Sbjct: 339 MANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHY 398
Query: 291 GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVK 350
GC+VD+ +AG LEEA I M + PN +IW S L + H + D+ E ++ + V
Sbjct: 399 GCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIE-VA 457
Query: 351 PENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
PE G + L+ ++Y + WE VR++M + RK G S +
Sbjct: 458 PETI-GCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSV 501
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 87/362 (24%), Positives = 151/362 (41%), Gaps = 87/362 (24%)
Query: 35 IHHLHSHILKLGFISHVYVATSLLHEYV---VTSFGFARKLFDELPERNAVTWNTMIKGY 91
+ LH+ LK +H +V++ LL Y + G+AR +FD + R+ + WNT+IK Y
Sbjct: 32 VEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCY 91
Query: 92 SKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTI 151
+ N ++D G+ LF E++ PD T+
Sbjct: 92 VE------------------------------NQFSHD-GIVLFHELVHE--YLPDNFTL 118
Query: 152 GAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELM 211
V+ GC+ LG V GK HG +K + + + LV+MY+KCG + A VF+ M
Sbjct: 119 PCVIKGCARLGVVQ--EGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGM 176
Query: 212 EERNVISWTALICG------SAHRGYSE-------------------------------- 233
+++V+ W +LI G + GY +
Sbjct: 177 IDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELN 236
Query: 234 ----DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE-YDLEPRIQ 288
DA+ +F MM G +P+ T VL+A ++ +GR +++ ++L+ +
Sbjct: 237 GQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILG 296
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348
+++++ K G +E A V R ++ + V W + + H MA + L M
Sbjct: 297 --TSLIEMYAKCGCIESALTVFRAIQ-KKKVGHWTAIIVGLGIH---GMANHALALFLEM 350
Query: 349 VK 350
K
Sbjct: 351 CK 352
>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
Length = 865
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 132/394 (33%), Positives = 229/394 (58%), Gaps = 5/394 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF+QM + + D F++ ++ C +L + LHS LK G I V V+ SL+
Sbjct: 356 VELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISM 415
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + A +F + E++ V+W +MI +S+ GN+ +AR+FF+ M +NV +W+AM+
Sbjct: 416 YAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAML 475
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
AY+ GA + GL+++ M+S + + PD +T + GC+ LG+ L G G VK
Sbjct: 476 GAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKL--GDQIIGRTVKV 533
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
L+ +A ++ MY+KCG + A VF+ + ++++SW A+I G + G + A+ +F
Sbjct: 534 GLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIF 593
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+ + G KP+ +++ VL+ C H+GLV EG+ YF M+ +++ P ++H+ CMVDL G+
Sbjct: 594 DDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGR 653
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG L EA ++I M ++P +WG+ L+ACK H ++AE K + P D G +
Sbjct: 654 AGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSP--DSGSYM 711
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
L+ +Y K + + ++RKLM ++ ++K G S
Sbjct: 712 LMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYS 745
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 94/357 (26%), Positives = 161/357 (45%), Gaps = 41/357 (11%)
Query: 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLF-DELPERN 80
L+SC L LH ++ +G S V++ +LLH Y+ + AR+L ++ N
Sbjct: 11 LRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTDIAHPN 70
Query: 81 AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMIS 140
+T N M+ GY K G + +A + F RMP R+VASW+ +++ Y + Y L+ F M
Sbjct: 71 VITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHR 130
Query: 141 NEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG- 199
+ +P+ T + C LG L + G + K + + +A LVDM+ +CG
Sbjct: 131 SGDSSPNAFTFAYAMKSCGALGERSLAL--QLLGMVQKFGSQDDSDVAAALVDMFVRCGT 188
Query: 200 -------FLK-----------------------YALMVFELMEERNVISWTALICGSAHR 229
F++ +AL +F+ M ER+V+SW ++ +
Sbjct: 189 VDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQS 248
Query: 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQH 289
G +AL + MQ+ GV+ + T+T LTAC + G++ + P I
Sbjct: 249 GRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNL---PCIDP 305
Query: 290 Y--GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
Y +V+L+ K G +EA V ++ + N + W +A +H F + + Q
Sbjct: 306 YVASALVELYAKCGCFKEAKGVFNSLH-DRNNVAWTVLIAGFLQHGCFTESVELFNQ 361
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 161/330 (48%), Gaps = 7/330 (2%)
Query: 1 MQLFSQMHRQSVPS-DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
++ F MHR S ++F+ + +KSC ++ L + K G VA +L+
Sbjct: 122 LESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVD 181
Query: 60 EYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
+V + A +LF + E N+M+ GY K+ V A + F+ MP R+V SW+ M
Sbjct: 182 MFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMM 241
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
++A +G L + +M S +G+ D T + L+ C+ L S L GK H +++
Sbjct: 242 VSALSQSGRVREALDMVVDMQS-KGVRLDSTTYTSSLTACARLSS--LRWGKQLHAQVIR 298
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
N ++ +A+ LV++YAKCG K A VF + +RN ++WT LI G G +++ L
Sbjct: 299 NLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVEL 358
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F M+A + ++ +++ C + GR+ + + ++ + ++ ++
Sbjct: 359 FNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVS-NSLISMYA 417
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
K L+ A + R M E +++ W S + A
Sbjct: 418 KCDNLQSAESIFRFMN-EKDIVSWTSMITA 446
>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 725
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 141/396 (35%), Positives = 231/396 (58%), Gaps = 6/396 (1%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+LF +M +V D + +I+ +C N+ ++ +++ ++ T+L+ Y
Sbjct: 201 KLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMY 260
Query: 62 V-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
A + F ++ RN M+ GYSK+G + +AR F++ ++++ W+ MI+
Sbjct: 261 AGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMIS 320
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
AY + L++F EM + G+ PD +T+ +V+S C +LG+ L K H + N
Sbjct: 321 AYAESDHPQEALRVFEEMCCS-GIKPDVVTMLSVISACVNLGT--LDKAKWVHRYTHLNG 377
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
E I L++MYAKCG L A VFE M RNV+SW+++I A G + D+LSLF
Sbjct: 378 LESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFA 437
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ V+PNE+TF GVL C H+GLV+EG+K F + +EY++ P+I+HYGCMVDLFG+A
Sbjct: 438 QMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGRA 497
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
L EA EVI +M + PNV+IWGS ++AC+ H + ++ E K+ L++ +P++DG + L
Sbjct: 498 NLLREALEVIESMPMAPNVVIWGSLMSACRVHGELELGELAAKRILKL-EPDHDGAL-VL 555
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
+ ++Y +W+ +R +M + V K +G S I
Sbjct: 556 MSNIYAREYRWDYVRIIRWIMEKKKVFKEKGLSRID 591
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 90/352 (25%), Positives = 154/352 (43%), Gaps = 68/352 (19%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS-FGFARKLF 73
D S ILK+ + + L LH K+ +S +V T L+ Y +AR +F
Sbjct: 113 DRISFPPILKAVSKVSALFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVF 172
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
DE+ +R+ VTWNTMI+ Y + G + EA FE M NV
Sbjct: 173 DEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNV--------------------- 211
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
PD+M + ++S C G+ + ++ + F+++N+ ++ + T LV
Sbjct: 212 -----------MPDEMILCNIVSACGRTGN--MRYNRAIYDFLIENDVRMDTHLLTALVT 258
Query: 194 MYA-------------------------------KCGFLKYALMVFELMEERNVISWTAL 222
MYA K G L A ++F+ E ++++ WT +
Sbjct: 259 MYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTM 318
Query: 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD 282
I A + ++AL +FE M +G+KP+ +T V++ACV+ G +D+ K+
Sbjct: 319 ISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKA-KWVHRYTHLNG 377
Query: 283 LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
LE + +++++ K G L+ A +V M NV+ W S + A H +
Sbjct: 378 LESVLPIDNALINMYAKCGGLDAARDVFEKMPTR-NVVSWSSMINAFAMHGE 428
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 85/339 (25%), Positives = 149/339 (43%), Gaps = 43/339 (12%)
Query: 13 PSDSFSILH---ILKSCTHFNNLTVIHHLHSHILKLGFISH--VYVATSLLHEYVVTSFG 67
P SF++ IL+ + +L I LH+HIL+ I+H +L +
Sbjct: 6 PRPSFAVSAANTILEKLSFCKSLNHIKQLHAHILR-TVINHKLNSFLFNLSFSSSSINLS 64
Query: 68 FARKLFDEL-PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAG 126
+A LF + P ++ +N++++ S+SG E R A I
Sbjct: 65 YALNLFSSISPLPESIVFNSLLRDLSRSG---EPR---------------ATI------- 99
Query: 127 AYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ 186
LF + I + G D+++ +L S + + L G HGF K +
Sbjct: 100 -------LFYQRIRHVGGRFDRISFPPILKAVSKVSA--LFEGMELHGFAFKIATLSDPF 150
Query: 187 IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
+ T L+DMYA CG + YA VF+ M +R+V++W +I G ++A LFE M+ +
Sbjct: 151 VETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSN 210
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
V P+EM +++AC TG + R + + E D+ +V ++ AG ++ A
Sbjct: 211 VMPDEMILCNIVSACGRTGNMRYNRAIYDFLIEN-DVRMDTHLLTALVTMYAGAGCMDMA 269
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQA 345
E R M + N+ + + ++ + + D A + Q
Sbjct: 270 MEFFRKMSVR-NLFVSTAMVSGYSKAGRLDDARVIFDQT 307
>gi|125525262|gb|EAY73376.1| hypothetical protein OsI_01257 [Oryza sativa Indica Group]
Length = 499
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 135/361 (37%), Positives = 212/361 (58%), Gaps = 7/361 (1%)
Query: 37 HLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFDELPE-RNAVTWNTMIKGYSKS 94
LHS +++ G + + + SL+ Y S AR++FDE + V+WN MI GY KS
Sbjct: 92 QLHSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAAYADVVSWNVMIDGYVKS 151
Query: 95 GNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAV 154
G++ AR+ F+ MP RNV SW+ +I AY + +++FR M EG+ PD + + +V
Sbjct: 152 GDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRM-QVEGIEPDGVALLSV 210
Query: 155 LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER 214
LS C LG V L G+ H F+++ + ++DMY KCG +K AL VFE ME++
Sbjct: 211 LSACGDLGVVDL--GEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQK 268
Query: 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF 274
++++WT +I G A G +A+ LF M+ V PN++TF VL+ C H GL D GR YF
Sbjct: 269 SIVTWTTMIAGFALHGLGSEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYF 328
Query: 275 KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
K + +Y ++PR++HYGCM+DL G+AG L EA +I+ M + N IWG+ LAA + H
Sbjct: 329 KTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHGD 388
Query: 335 FDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSV 394
++ E+ + + + +P N G + L+ ++Y E+W+ +R M ++ +R G+S
Sbjct: 389 TELGEQALLHLIEL-EPHNSGN-YILLSNIYAEQERWDAVRELRISMRDRGLRNVPGASS 446
Query: 395 I 395
I
Sbjct: 447 I 447
>gi|87240913|gb|ABD32771.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 497
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 144/397 (36%), Positives = 231/397 (58%), Gaps = 30/397 (7%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHH---LHSHILKLGF-ISHVYVATSLLH 59
F QM V + +++ +L +C H + T I LH+H K GF ++ V V T+L+
Sbjct: 75 FIQMLEAEVEPNHITLITLLSACAHSPSKTSITFGAALHTHAFKHGFAMNDVMVGTALID 134
Query: 60 EYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y +AR +FD++ RN V+WNTMI GY K+G+V +A F+++P++NV SW+ +
Sbjct: 135 MYAKCGKLDYARLVFDQMGVRNLVSWNTMIDGYMKNGDVDDALKLFDKLPVKNVVSWTVV 194
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I ++ Y+ L+ FREM G+ PD +T+ A++S C++LG++GL G H ++K
Sbjct: 195 IGGFVKKECYEEALECFREM-QLAGVVPDFVTVIAIISACANLGALGL--GLWVHRLVMK 251
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
E+ N ++ L+DMYA+CG ++ A VF+ M +RN++SW ++I G A G ++ ALS
Sbjct: 252 KEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLVSWNSIIVGFAVNGLADKALSF 311
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F C H GL+DEG K F I ++ PRI+HYGC+VDL+
Sbjct: 312 F--------------------PCSHAGLIDEGLKIFADIKRDHRNSPRIEHYGCLVDLYS 351
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG L+EA++VI+ M + PN ++ GS LAAC+ ++AE+V+K + + P D +
Sbjct: 352 RAGRLKEAWDVIKKMPMMPNEVVLGSLLAACRTQGDVELAEKVMKYQVELY-PGGDSN-Y 409
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L ++Y KW+GA +VR+ M + ++K S I
Sbjct: 410 VLFSNIYAAVGKWDGASKVRREMKERGLQKNLAFSSI 446
>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
Length = 688
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 153/441 (34%), Positives = 242/441 (54%), Gaps = 53/441 (12%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF +M + + F++ +LK+C + +H +KLG S V+V +L+ YV
Sbjct: 201 LFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYV 260
Query: 63 VTSF-GFARKLFDELP-------------------------------------------- 77
V ARKLFD++
Sbjct: 261 VCGLIHCARKLFDDITDKTLVSWNSMIEITGVKIDIIVRNALXDMYAKCGNLHSAQAIFD 320
Query: 78 ---ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKL 134
E+N V+W +MI Y++ G++ AR F++MP +NV SW++MI+ YL G Y L L
Sbjct: 321 RTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDL 380
Query: 135 FREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDM 194
F +M N + PD+ T+ ++L+ CS LG L+MGK H +I+ N+ + L+DM
Sbjct: 381 FNKM-RNSRVVPDEATLVSILAACSQLGD--LVMGKKIHNYILSNKGAYGVTLYNSLIDM 437
Query: 195 YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTF 254
YAKCG + AL +F M +N++SW +I A G +A+ LFE MQA G P+E+T
Sbjct: 438 YAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITL 497
Query: 255 TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR 314
TG+L+AC H+GLVD G YF + Y + I+HY CMVDL G+ G L EA E+I M
Sbjct: 498 TGLLSACSHSGLVDMGLYYFDRMGVIYRVXREIEHYACMVDLLGRGGLLGEAIELIGRMP 557
Query: 315 LEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGA 374
++P+V++WG+ L AC+ H ++ ++++KQ L + +P + GG++ LI ++Y ++WE
Sbjct: 558 MKPDVVVWGALLGACRIHGNVEIGKQILKQLLEL-EPHS-GGLYVLISNIYWEAQRWEDV 615
Query: 375 ERVRKLMLNQNVRKARGSSVI 395
+++RKLM+++ ++K R S I
Sbjct: 616 KKIRKLMIDRGIKKGRAISSI 636
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/367 (22%), Positives = 148/367 (40%), Gaps = 75/367 (20%)
Query: 26 CTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDELPERNAV 82
C +++ + LH+ I+ G + L+ V G +A+++FD++P+ N
Sbjct: 121 CEKCSSMRGLKLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKF 180
Query: 83 TWNTMIKGYSKSGNVCEARDFFERMPLRNV------------------ASW--------- 115
+N++I+GYS S + +A F RM + A W
Sbjct: 181 MYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLA 240
Query: 116 ------------SAMIAAYLNAGAYDPGLKLFRE-----------MISNEGLTPDQMTIG 152
+A+IA Y+ G KLF + MI G+ D +
Sbjct: 241 IKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIEITGVKIDIIVRN 300
Query: 153 AVL---SGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFE 209
A+ + C +L S + ++ +V W T ++ YA+ G ++ A +F+
Sbjct: 301 ALXDMYAKCGNLHSAQAIFDRTQEKNVV--SW-------TSMISAYAQHGSIEVARQIFD 351
Query: 210 LMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
M +NV+SW ++I G +AL LF M+ + V P+E T +L AC G +
Sbjct: 352 QMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVM 411
Query: 270 GRKYFKMIDEEYDLEPR----IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSF 325
G+K Y L + + Y ++D++ K G + A ++ M N++ W
Sbjct: 412 GKKI-----HNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMP-GKNLVSWNVI 465
Query: 326 LAACKEH 332
+ A H
Sbjct: 466 IGALALH 472
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 60/279 (21%), Positives = 122/279 (43%), Gaps = 55/279 (19%)
Query: 94 SGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGA 153
+G++ A+ F+++P N ++++I Y N+ + LFR MI + GL+P++ T+
Sbjct: 161 AGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICS-GLSPNEFTLPF 219
Query: 154 VLSGCSHLGSVGLLMGKSA-------HGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
VL C KSA HG +K + L+ +Y CG + A
Sbjct: 220 VLKACG---------CKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARK 270
Query: 207 VFELMEERNVISWTALI---------------------CGSAHRGYSEDALSLFEMMQAT 245
+F+ + ++ ++SW ++I CG+ H A ++F+ Q
Sbjct: 271 LFDDITDKTLVSWNSMIEITGVKIDIIVRNALXDMYAKCGNLH-----SAQAIFDRTQ-- 323
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305
+ N +++T +++A G ++ R+ F + + + + M+ + + G E
Sbjct: 324 --EKNVVSWTSMISAYAQHGSIEVARQIFDQMPGK-----NVVSWNSMISCYLREGQYRE 376
Query: 306 AYEV---IRTMRLEPNVIIWGSFLAACKEHKQFDMAERV 341
A ++ +R R+ P+ S LAAC + M +++
Sbjct: 377 ALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKI 415
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 125/319 (39%), Gaps = 82/319 (25%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF++M V D +++ IL +C+ +L + +H++IL V + SL+
Sbjct: 378 LDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDM 437
Query: 61 Y-----VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASW 115
Y VVT A +F E+P +N V+WN +I + G EA
Sbjct: 438 YAKCGPVVT----ALDIFLEMPGKNLVSWNVIIGALALHGCGLEA--------------- 478
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
+KLF EM +G PD++T+ +LS CSH G
Sbjct: 479 ----------------IKLFEEM-QADGTLPDEITLTGLLSACSHSG------------- 508
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
LVDM G + M R + + ++ G +A
Sbjct: 509 ---------------LVDM----GLYYFDRMGVIYRVXREIEHYACMVDLLGRGGLLGEA 549
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
+ L M +KP+ + + +L AC G V+ G++ K + E LEP H G +
Sbjct: 550 IELIGRMP---MKPDVVVWGALLGACRIHGNVEIGKQILKQLLE---LEP---HSGGLYV 600
Query: 296 LFGKAGFLEEAYEVIRTMR 314
L + + +E ++ +R
Sbjct: 601 LISNIYWEAQRWEDVKKIR 619
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 95/260 (36%), Gaps = 82/260 (31%)
Query: 131 GLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATI 190
GLKL I GLT + +T+G ++S C+
Sbjct: 129 GLKLLHAQIILHGLTNETLTLGKLISFCA------------------------------- 157
Query: 191 LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250
VD G L+YA +F+ + + N + +LI G ++ DA+ LF M +G+ PN
Sbjct: 158 -VD---DAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPN 213
Query: 251 EMTFTGVLTAC-----------------------------------VHTGLVDEGRKYFK 275
E T VL AC V GL+ RK F
Sbjct: 214 EFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFD 273
Query: 276 MIDEE-----------YDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324
I ++ ++ I + D++ K G L A + + E NV+ W S
Sbjct: 274 DITDKTLVSWNSMIEITGVKIDIIVRNALXDMYAKCGNLHSAQAIFDRTQ-EKNVVSWTS 332
Query: 325 FLAACKEHKQFDMAERVIKQ 344
++A +H ++A ++ Q
Sbjct: 333 MISAYAQHGSIEVARQIFDQ 352
>gi|125532120|gb|EAY78685.1| hypothetical protein OsI_33787 [Oryza sativa Indica Group]
Length = 493
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 140/367 (38%), Positives = 228/367 (62%), Gaps = 13/367 (3%)
Query: 38 LHSHILKLGFISH-VYVATSLLHEYVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSG 95
+H+ L+ G + ++V+ SL+H Y + G AR+LFDE+P N V+WN ++ GY+K
Sbjct: 84 VHAQPLRRGLLPQDLHVSNSLVHMYAACALPGLARRLFDEIPRPNHVSWNALLDGYAKCR 143
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM----ISNEGLTPDQMTI 151
++ AR F RMP R+V SWSAMI + G + L +F M ++G+ + +T+
Sbjct: 144 DLPAARRVFARMPQRDVVSWSAMIDGCVKCGEHREALAVFEMMEATAARHDGVRANDVTM 203
Query: 152 GAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFEL- 210
+VL C+HLG L+ G+ H ++ ++ + LN ++AT LVDMYAKCG + AL VF
Sbjct: 204 VSVLGACAHLGD--LVRGRKMHRYLEEHGFPLNIRLATSLVDMYAKCGAIVEALEVFHAV 261
Query: 211 -MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
+E +V+ W A+I G A G S ++L +F+ M+ GV P+E+T+ +L+ACVH GLVDE
Sbjct: 262 PVESTDVLIWNAVIGGLAVHGMSRESLQMFQKMEHAGVVPDEITYLCLLSACVHGGLVDE 321
Query: 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAAC 329
++F+ + E L P ++HY C+VD+ G+AG LEEAY V+++M ++P+V + G+ L AC
Sbjct: 322 AWRFFRSL-EAQRLRPHVEHYACLVDVLGRAGRLEEAYGVVKSMPMKPSVSVLGALLNAC 380
Query: 330 KEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKA 389
H ++ E V +Q + + +P++DG L ++Y + +W+ A++ RK+M + V+K
Sbjct: 381 HIHGWVELGEAVGRQLVHL-QPDHDGRYIGL-SNIYAVARRWQEAKKARKVMEERGVKKV 438
Query: 390 RGSSVIS 396
G S I
Sbjct: 439 PGFSEID 445
>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 889
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 130/394 (32%), Positives = 227/394 (57%), Gaps = 5/394 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF+QM + + D F++ I+ C++ ++ + LHS LK G V ++ SL+
Sbjct: 380 LELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISM 439
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + A +F + ER+ V+W M+ YS+ GN+ +AR+FF+ M RNV +W+AM+
Sbjct: 440 YAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAML 499
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
AY+ GA + GLK++ M++ + + PD +T + GC+ +G+ L G G VK
Sbjct: 500 GAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGANKL--GDQITGHTVKV 557
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
L+ + ++ MY+KCG + A +F+ + ++++SW A+I G + G + A+ +F
Sbjct: 558 GLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIF 617
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+ M G KP+ +++ VL++C H+GLV EG+ YF M+ ++++ P ++H+ CMVDL +
Sbjct: 618 DDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVSPGLEHFSCMVDLLAR 677
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG L EA +I M ++P +WG+ L+ACK H ++AE K + P D G +
Sbjct: 678 AGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNELAELAAKHLFDLDSP--DSGGYM 735
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
L+ +Y K + +VRKLM ++ ++K G S
Sbjct: 736 LLAKIYADAGKSVDSAQVRKLMRDKGIKKNPGYS 769
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 164/344 (47%), Gaps = 47/344 (13%)
Query: 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLF-DELPERN 80
L+SC L LH ++ +G S V++ +LLH Y+ + AR L ++ E N
Sbjct: 35 LRSCGARGALAGARALHGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDITEPN 94
Query: 81 AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMIS 140
+T N M+ GY+K G++ +A + F RMP R+V SW+ +++ Y +G + ++ F M
Sbjct: 95 VITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRR 154
Query: 141 NEGLTPDQMTIGAVLSGCSHLG--SVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198
+ P+ T G + C LG V L + G + K ++ + +AT +VDM+ +C
Sbjct: 155 SGDSLPNAFTFGCAMKSCGALGWHEVALQL----LGLLTKFGFQGDPDVATGIVDMFVRC 210
Query: 199 GFLKY-------------------------------ALMVFELMEERNVISWTALICGSA 227
G + + AL +FE M ER+V+SW ++ +
Sbjct: 211 GAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALS 270
Query: 228 HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPR 286
G + +ALS+ M GV+ + T+T LTAC + G++ + ++I ++P
Sbjct: 271 QSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPY 330
Query: 287 IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW----GSFL 326
+ MV+L+ K G +EA V ++R + N + W G FL
Sbjct: 331 VA--SAMVELYAKCGCFKEARRVFSSLR-DRNTVSWTVLIGGFL 371
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 94/337 (27%), Positives = 160/337 (47%), Gaps = 21/337 (6%)
Query: 1 MQLFSQMHR--QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL 58
M+ F M R S+P ++F+ +KSC V L + K GF VAT ++
Sbjct: 146 MESFVSMRRSGDSLP-NAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIV 204
Query: 59 HEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
+V + FA K F ++ N+M+ GY+KS V A + FE MP R+V SW+
Sbjct: 205 DMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNM 264
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
M++A +G L + +M N G+ D T + L+ C+ L S+G GK H ++
Sbjct: 265 MVSALSQSGRAREALSVAVDM-HNRGVRLDSTTYTSSLTACAKLSSLGW--GKQLHAQVI 321
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
++ ++ +A+ +V++YAKCG K A VF + +RN +SWT LI G G ++L
Sbjct: 322 RSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLE 381
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHY------G 291
LF M+A + ++ +++ C R + + + L + H
Sbjct: 382 LFNQMRAELMTVDQFALATIISGC-------SNRMDMCLARQLHSLSLKSGHTRAVVISN 434
Query: 292 CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
++ ++ K G L+ A + +M E +++ W L A
Sbjct: 435 SLISMYAKCGNLQNAESIFSSME-ERDIVSWTGMLTA 470
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 91/218 (41%), Gaps = 10/218 (4%)
Query: 172 AHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGY 231
A G + + E N I+++ YAK G L A +F M R+V SW L+ G G
Sbjct: 82 ARGLLRGDITEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGR 141
Query: 232 SEDALSLFEMMQATGVK-PNEMTFTGVLTACVHTGLVDEGRKYFKMIDE-EYDLEPRIQH 289
DA+ F M+ +G PN TF + +C G + + ++ + + +P +
Sbjct: 142 FLDAMESFVSMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVAT 201
Query: 290 YGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349
+VD+F + G ++ A + + P V S LA + D A + +
Sbjct: 202 --GIVDMFVRCGAVDFASKQFSQIE-RPTVFCRNSMLAGYAKSYGVDHALELFESM---- 254
Query: 350 KPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVR 387
PE D + ++ + + + A V M N+ VR
Sbjct: 255 -PERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVR 291
>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 722
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 139/396 (35%), Positives = 231/396 (58%), Gaps = 6/396 (1%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+LF +M +V D + +I+ +C N+ ++ +++ ++ T+L+ Y
Sbjct: 198 KLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMY 257
Query: 62 V-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
AR+ F ++ RN M+ GYSK G + +A+ F++ +++ W+ MI+
Sbjct: 258 AGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMIS 317
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
AY+ + L++F EM + G+ PD +++ +V+S C++LG L K H I N
Sbjct: 318 AYVESDYPQEALRVFEEMCCS-GIKPDVVSMFSVISACANLGI--LDKAKWVHSCIHVNG 374
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
E I L++MYAKCG L VFE M RNV+SW+++I + G + DALSLF
Sbjct: 375 LESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFA 434
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ V+PNE+TF GVL C H+GLV+EG+K F + +EY++ P+++HYGCMVDLFG+A
Sbjct: 435 RMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRA 494
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
L EA EVI +M + NV+IWGS ++AC+ H + ++ + K+ L + +P++DG + L
Sbjct: 495 NLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILEL-EPDHDGAL-VL 552
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
+ ++Y ++WE +R++M +NV K +G S I
Sbjct: 553 MSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRID 588
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 89/352 (25%), Positives = 153/352 (43%), Gaps = 68/352 (19%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS-FGFARKLF 73
D FS L ILK+ + + L LH K+ + +V T + Y +AR +F
Sbjct: 110 DQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVF 169
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
DE+ R+ VTWNTMI+ Y + G V EA FE M NV
Sbjct: 170 DEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNV--------------------- 208
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
PD+M + ++S C G+ + ++ + F+++N+ ++ + T LV
Sbjct: 209 -----------MPDEMILCNIVSACGRTGN--MRYNRAIYEFLIENDVRMDTHLLTALVT 255
Query: 194 MYA-------------------------------KCGFLKYALMVFELMEERNVISWTAL 222
MYA KCG L A ++F+ E+++++ WT +
Sbjct: 256 MYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTM 315
Query: 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD 282
I Y ++AL +FE M +G+KP+ ++ V++AC + G++D+ + I
Sbjct: 316 ISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVN-G 374
Query: 283 LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
LE + +++++ K G L+ +V M NV+ W S + A H +
Sbjct: 375 LESELSINNALINMYAKCGGLDATRDVFEKMP-RRNVVSWSSMINALSMHGE 425
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 100/212 (47%), Gaps = 4/212 (1%)
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
LF + I + G DQ + +L S + + L G HG K + + T +D
Sbjct: 97 LFYQRIRHVGGRLDQFSFLPILKAVSKVSA--LFEGMELHGVAFKIATLCDPFVETGFMD 154
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
MYA CG + YA VF+ M R+V++W +I G ++A LFE M+ + V P+EM
Sbjct: 155 MYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMI 214
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
+++AC TG + R ++ + E D+ +V ++ AG ++ A E R M
Sbjct: 215 LCNIVSACGRTGNMRYNRAIYEFLIEN-DVRMDTHLLTALVTMYAGAGCMDMAREFFRKM 273
Query: 314 RLEPNVIIWGSFLAACKEHKQFDMAERVIKQA 345
+ N+ + + ++ + + D A+ + Q
Sbjct: 274 SVR-NLFVSTAMVSGYSKCGRLDDAQVIFDQT 304
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 140/395 (35%), Positives = 217/395 (54%), Gaps = 35/395 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L +M + V + + IL+ CT L +H +I++ G+ ++V
Sbjct: 283 LELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVV------ 336
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
N +I Y K G + EAR F +P R+V +W+AM+
Sbjct: 337 ------------------------NALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVT 372
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y G +D + LFR M +G+ PD+MT + L+ CS L GKS H +V
Sbjct: 373 GYAQLGFHDEAIDLFRRM-QQQGIKPDKMTFTSALTSCS--SPAFLQEGKSIHQQLVHAG 429
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ L+ + + LV MYAKCG + A +VF M ERNV++WTA+I G A G +AL FE
Sbjct: 430 YSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFE 489
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ G+KP+++TFT VL+AC H GLV+EGRK+F+ + +Y ++P ++HY C VDL G+A
Sbjct: 490 QMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRA 549
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G LEEA VI TM +P +WG+ L+AC+ H + ER + L++ P++DG +
Sbjct: 550 GHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKL-DPDDDGA-YVA 607
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y ++E AE+VR++M ++V K G S I
Sbjct: 608 LSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWI 642
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 167/308 (54%), Gaps = 15/308 (4%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
+++ Y+K G++ +A+ F+++P +NV +W+ +IA Y G D L+L +M E +
Sbjct: 236 TSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAE-V 294
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
P+++T ++L GC+ + L GK H +I+++ + + L+ MY KCG LK A
Sbjct: 295 APNKITYTSILQGCT--TPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEA 352
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
+F + R+V++WTA++ G A G+ ++A+ LF MQ G+KP++MTFT LT+C
Sbjct: 353 RKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSP 412
Query: 265 GLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWG 323
+ EG+ + +++ Y L+ +Q +V ++ K G +++A V M E NV+ W
Sbjct: 413 AFLQEGKSIHQQLVHAGYSLDVYLQ--SALVSMYAKCGSMDDARLVFNQMS-ERNVVAWT 469
Query: 324 SFLAACKEHKQFDMAERVIKQALRM-VKPENDGGVFTLI---CDLYTMNEKWEGAERVRK 379
+ + C +H + A +Q + +KP D FT + C + E EG + R
Sbjct: 470 AMITGCAQHGRCREALEYFEQMKKQGIKP--DKVTFTSVLSACTHVGLVE--EGRKHFRS 525
Query: 380 LMLNQNVR 387
+ L+ ++
Sbjct: 526 MYLDYGIK 533
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 164/344 (47%), Gaps = 43/344 (12%)
Query: 12 VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARK 71
V SD F L L+ C +L +H+ ILK G + Y+
Sbjct: 94 VYSDVFRGL--LQECARLRSLEQGREVHAAILKSGIQPNRYLE----------------- 134
Query: 72 LFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPG 131
NT++ Y+K G++ +AR F+ + RN+ SW+AMI A++
Sbjct: 135 -------------NTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEA 181
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
K + E + G PD++T ++L+ ++ L +G+ H I K EL ++ T L
Sbjct: 182 YKCY-ETMKLAGCKPDKVTFVSLLNAFTN--PELLQVGQKVHMEIAKAGLELEPRVGTSL 238
Query: 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE 251
V MYAKCG + A ++F+ + E+NV++WT LI G A +G + AL L E MQ V PN+
Sbjct: 239 VGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNK 298
Query: 252 MTFTGVLTACVHTGLVDEGRKYFK-MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI 310
+T+T +L C ++ G+K + +I Y E I ++ ++ K G L+EA ++
Sbjct: 299 ITYTSILQGCTTPLALEHGKKVHRYIIQSGYGRE--IWVVNALITMYCKCGGLKEARKLF 356
Query: 311 RTMRLEPNVIIWGSFLAACKE----HKQFDMAERVIKQALRMVK 350
+ +V+ W + + + + D+ R+ +Q ++ K
Sbjct: 357 GDLP-HRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDK 399
>gi|56783979|dbj|BAD81434.1| pentatricopeptide (PPR) repeat-containing protein -like [Oryza
sativa Japonica Group]
Length = 503
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 135/361 (37%), Positives = 212/361 (58%), Gaps = 7/361 (1%)
Query: 37 HLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFDELP-ERNAVTWNTMIKGYSKS 94
LHS +++ G + + + SL+ Y S AR++FDE + V+WN MI GY KS
Sbjct: 96 QLHSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAASADVVSWNVMIDGYVKS 155
Query: 95 GNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAV 154
G++ AR+ F+ MP RNV SW+ +I AY + +++FR M EG+ PD + + +V
Sbjct: 156 GDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRM-QVEGIEPDGVALLSV 214
Query: 155 LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER 214
LS C LG V L G+ H F+++ + ++DMY KCG +K AL VFE ME++
Sbjct: 215 LSACGDLGVVDL--GEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQK 272
Query: 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF 274
++++WT +I G A G +A+ LF M+ V PN++TF VL+ C H GL D GR YF
Sbjct: 273 SIVTWTTMIAGFALHGLGLEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYF 332
Query: 275 KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
K + +Y ++PR++HYGCM+DL G+AG L EA +I+ M + N IWG+ LAA + H
Sbjct: 333 KTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHGD 392
Query: 335 FDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSV 394
++ E+ + + + +P N G + L+ ++Y E+W+ +R M ++ +R G+S
Sbjct: 393 TELGEQALLHLIEL-EPHNSGN-YILLSNIYAEQERWDAVRELRISMRDRGLRNVPGASS 450
Query: 395 I 395
I
Sbjct: 451 I 451
>gi|223946989|gb|ACN27578.1| unknown [Zea mays]
gi|414586292|tpg|DAA36863.1| TPA: hypothetical protein ZEAMMB73_743648 [Zea mays]
Length = 545
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 139/384 (36%), Positives = 223/384 (58%), Gaps = 9/384 (2%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLF 73
D F+ +LK+C + +H+H+ + G SH V SL+ Y ARK F
Sbjct: 115 DRFTYPFLLKACGALAASRLGRQVHAHVARSGCESHAVVQNSLIEMYTRCGDLSTARKAF 174
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
D + E++ V+WNT+I +++ G + AR+ F MP + V SW+A+++ Y G + ++
Sbjct: 175 DGMREKDVVSWNTLISAHARMGQMRRARELFYSMPDKTVVSWTALVSGYTAVGDFTGAVE 234
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
+FR ++ EG PD ++I AVL C+ LG+ L +G+ + + K+ I L++
Sbjct: 235 VFR-LMQMEGFEPDDVSIVAVLPACAQLGA--LELGRWIYAYCSKHGMLGKVYICNALME 291
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG-VKPNEM 252
MYAKCG ++ AL +F M E++VISW+ I G A G + +A+ LFE+M G V PN +
Sbjct: 292 MYAKCGCIEEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVRLFEVMDREGRVMPNGI 351
Query: 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312
TF G+L+AC H GLVDEG +Y + E+Y +EP ++HYGC+VDL G++G ++ A + IR
Sbjct: 352 TFVGLLSACSHAGLVDEGLRYLDQMKEDYGVEPGVEHYGCVVDLLGRSGRIQRALDTIRG 411
Query: 313 MRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE-NDGGVFTLICDLYTMNEKW 371
M + P+ IWGS L+AC+ H + A + A R+V+ E D G ++ ++Y +W
Sbjct: 412 MPVPPDGKIWGSLLSACRSHGDVETA---VVAAERLVELEPGDVGNLVMLANVYGAAGRW 468
Query: 372 EGAERVRKLMLNQNVRKARGSSVI 395
RK + +++ RK G S+I
Sbjct: 469 GEVASTRKEIRSRSTRKTPGCSMI 492
>gi|108706388|gb|ABF94183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 823
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 143/416 (34%), Positives = 233/416 (56%), Gaps = 41/416 (9%)
Query: 12 VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL------------- 58
V D + +L++CT +H+H++K G S +V +L+
Sbjct: 78 VRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAA 137
Query: 59 -------HEYVVT------------SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCE 99
E V G AR LFDE P ++ V+WN MI Y+K G++
Sbjct: 138 ALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMAL 197
Query: 100 ARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCS 159
AR+ F+++P R+V SW+ MI+ Y+ G++ L+LF +M G PD +T+ ++LS C+
Sbjct: 198 ARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQM-QRMGEKPDIVTMLSLLSACA 256
Query: 160 HLGS--VGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVI 217
G VG + S +N + + + L+DMYAKCG +K A VF M +++V
Sbjct: 257 DSGDLDVGQRLHSSLSDMFSRNGFPV--VLGNALIDMYAKCGSMKSAHEVFWSMRDKDVS 314
Query: 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI 277
+W +++ G A G+ +++ +FE M V+P+E+TF VL AC H G+VD+GR++F ++
Sbjct: 315 TWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLM 374
Query: 278 DEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDM 337
+Y +EP I+HYGCMVD+ G+AG L+EA+E I TM+ EPN +IW + L+AC+ H + ++
Sbjct: 375 QHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGEIEL 434
Query: 338 AERVIKQALRMVKPEND-GGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGS 392
A+ +Q ++K ND G + L+ ++Y +W G+E++RKLM + V K S
Sbjct: 435 AKHANRQ---LLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMDDSGVNKEADS 487
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 84/352 (23%), Positives = 159/352 (45%), Gaps = 61/352 (17%)
Query: 40 SHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCE 99
S + +L F S V V ++ H Y+V FD++P + +NT+I+G + + +
Sbjct: 11 SELRELLFASAVAVRGAIAHAYLV---------FDQIPRPDRFMYNTLIRGAAHTAAPRD 61
Query: 100 ARDFFERMPLR--------NVASWSAMIAAYLNAGAYDPGLKLFREMIS----------- 140
A + RM R + ++ ++ A GA D G+++ ++
Sbjct: 62 AVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKN 121
Query: 141 ----------NEGLTP---------DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
N G+ D + A+++GC+ G +G +A +E
Sbjct: 122 ALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIG-----AARDLF--DEC 174
Query: 182 ELNEQIA-TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ + ++ +++ YAK G + A +F+ + ER+V+SW +I G G AL LFE
Sbjct: 175 PVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFE 234
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG-CMVDLFGK 299
MQ G KP+ +T +L+AC +G +D G++ + + + G ++D++ K
Sbjct: 235 QMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAK 294
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH----KQFDMAERVIKQALR 347
G ++ A+EV +MR + +V W S + H + DM E+++K +R
Sbjct: 295 CGSMKSAHEVFWSMR-DKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVR 345
>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
[Vitis vinifera]
Length = 575
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 132/329 (40%), Positives = 209/329 (63%), Gaps = 6/329 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR++F+ +P+RN W++MI GY K GNV EAR F+R+P+RN+ +W+++I+ Y G
Sbjct: 243 AREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFS 302
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ L+ F +M + EG PD++TI +VLS CS LG L GK H + +LN+ +
Sbjct: 303 EEALEAFGKMQA-EGFEPDEVTIASVLSACSQLGL--LDAGKKIHHMMNHKGIKLNQFVL 359
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
LVDMYAKCG L A ++FE M RN W ++I G A G S++AL F M+ +
Sbjct: 360 NGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEG 419
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+E+TF VL+AC H G V+ G + F + E+Y L I+HYGC++DL G+AG ++EAY+
Sbjct: 420 PDEITFLSVLSACAHGGFVNAGLEIFSRM-EKYGLTTGIKHYGCLIDLLGRAGRIKEAYD 478
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG--GVFTLICDLYT 366
+I+ M ++PN ++WG+ L AC+ H +MA+RV+++ +++ + G + L+ ++Y
Sbjct: 479 LIKRMPVKPNDVVWGALLGACRVHLDMEMADRVVEEIVKVDSNISSGCDSHYVLLSNIYA 538
Query: 367 MNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+++WE AE++R M N+ +K G S I
Sbjct: 539 ASDRWEKAEKMRMEMANKGFQKTSGCSSI 567
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 154/318 (48%), Gaps = 20/318 (6%)
Query: 22 ILKSCTHFNNLTVIHH---LHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFDELP 77
+LK+C +L+++ H LH+ +K G V + TSL+ Y + +RK+FD +P
Sbjct: 100 VLKACA---SLSIVKHGKALHAESIKNGVDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMP 156
Query: 78 ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
ERNAVTWN MI GY +G+ A FE+M +R +W MI + +G + + F +
Sbjct: 157 ERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVTWIEMIDGFARSGDTETARRFFDD 216
Query: 138 MISN-EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA 196
+ S + + + + + G F W + ++ Y
Sbjct: 217 VPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFFA---W-------SSMISGYC 266
Query: 197 KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTG 256
K G +K A +F+ + RN+++W +LI G A G+SE+AL F MQA G +P+E+T
Sbjct: 267 KKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIAS 326
Query: 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE 316
VL+AC GL+D G+K M++ + + G +VD++ K G L A + M
Sbjct: 327 VLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNG-LVDMYAKCGDLANARLIFEGM-AH 384
Query: 317 PNVIIWGSFLAACKEHKQ 334
N W S ++ H Q
Sbjct: 385 RNRACWNSMISGFAIHGQ 402
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 112/238 (47%), Gaps = 21/238 (8%)
Query: 99 EARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF----REMISNEGLTPDQMTIGAV 154
+ DF ++++W +I +YL+ GA L ++ R+ + G+ P V
Sbjct: 47 QGSDFCPGKGTPSLSNWCHLIRSYLSQGAPREALLVYTGLRRKGVYLLGVAP------LV 100
Query: 155 LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER 214
L C+ L V GK+ H +KN + + I T LV MYAKCG + + VF+ M ER
Sbjct: 101 LKACASLSIVK--HGKALHAESIKNGVDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMPER 158
Query: 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF 274
N ++W A+ICG G S+ A+ LFE M +T+ ++ +G + R++F
Sbjct: 159 NAVTWNAMICGYLGNGDSKSAVLLFEKMSIR----TAVTWIEMIDGFARSGDTETARRFF 214
Query: 275 KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA-CKE 331
+ E + + MVD + + +E A EV M + N W S ++ CK+
Sbjct: 215 DDVPSELR---NVVTWTVMVDGYARNAEMEAAREVFEGMP-QRNFFAWSSMISGYCKK 268
>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 147/403 (36%), Positives = 222/403 (55%), Gaps = 14/403 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLG-FISHVYVATSLLH 59
+++F +M + D ++ ++ +C L +H+ ++K F + + +L+
Sbjct: 233 LEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVD 292
Query: 60 EYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y S AR++FD + RN V+ +M+ GY+++ +V AR F +M RNV SW+A+
Sbjct: 293 MYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNAL 352
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
IA Y G + L+LFR ++ E + P T G +LS C++L LL+G+ AH ++K
Sbjct: 353 IAGYTQNGENEEALRLFR-LLKRESIWPTHYTFGNLLSACANLAD--LLLGRQAHTHVLK 409
Query: 179 NEWELNEQ------IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
+E + L+DMY KCG ++ VFE M+ER+ +SW A+I G A GY
Sbjct: 410 QGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYG 469
Query: 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC 292
+AL +F M G KP+ +T GVL AC H GLV+EGR YF + EE+ L P HY C
Sbjct: 470 AEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSM-EEHGLIPLKDHYTC 528
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE 352
MVDL G+AG L EA +I M + P+ ++WGS LAACK H +M + ++ L + P
Sbjct: 529 MVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLE-IDPW 587
Query: 353 NDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
N G + L+ ++Y +W RVRKLM Q V K G S I
Sbjct: 588 N-SGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWI 629
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/307 (28%), Positives = 153/307 (49%), Gaps = 5/307 (1%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLF 73
+S +L SC + +H+ IL F +++ L+ Y ARKLF
Sbjct: 14 NSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLF 73
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
D +P+RN TWN++I +KSG + EA F MP + SW++M++ + ++ L+
Sbjct: 74 DRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLE 133
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
F +M E ++ + G+ LS C+ G + L MG H + K+ + + + + L+D
Sbjct: 134 YFVKM-HREDFLLNEYSFGSALSACA--GLMDLNMGTQVHALVSKSRYSTDVYMGSALID 190
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
MY+KCG + A VF M ERN+++W +LI G + +AL +F M +G++P+E+T
Sbjct: 191 MYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVT 250
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
V++AC + EG + + + + +VD++ K + EA V M
Sbjct: 251 LASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRM 310
Query: 314 RLEPNVI 320
+ NV+
Sbjct: 311 SIR-NVV 316
>gi|302142753|emb|CBI19956.3| unnamed protein product [Vitis vinifera]
Length = 446
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 132/329 (40%), Positives = 209/329 (63%), Gaps = 6/329 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR++F+ +P+RN W++MI GY K GNV EAR F+R+P+RN+ +W+++I+ Y G
Sbjct: 114 AREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFS 173
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ L+ F +M + EG PD++TI +VLS CS LG L GK H + +LN+ +
Sbjct: 174 EEALEAFGKMQA-EGFEPDEVTIASVLSACSQLGL--LDAGKKIHHMMNHKGIKLNQFVL 230
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
LVDMYAKCG L A ++FE M RN W ++I G A G S++AL F M+ +
Sbjct: 231 NGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEG 290
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+E+TF VL+AC H G V+ G + F + E+Y L I+HYGC++DL G+AG ++EAY+
Sbjct: 291 PDEITFLSVLSACAHGGFVNAGLEIFSRM-EKYGLTTGIKHYGCLIDLLGRAGRIKEAYD 349
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG--GVFTLICDLYT 366
+I+ M ++PN ++WG+ L AC+ H +MA+RV+++ +++ + G + L+ ++Y
Sbjct: 350 LIKRMPVKPNDVVWGALLGACRVHLDMEMADRVVEEIVKVDSNISSGCDSHYVLLSNIYA 409
Query: 367 MNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+++WE AE++R M N+ +K G S I
Sbjct: 410 ASDRWEKAEKMRMEMANKGFQKTSGCSSI 438
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 129/267 (48%), Gaps = 13/267 (4%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
+RK+FD +PERNAVTWN MI GY +G+ A FE+M +R +W MI + +G
Sbjct: 19 SRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVTWIEMIDGFARSGDT 78
Query: 129 DPGLKLFREMISN-EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
+ + F ++ S + + + + + G F W
Sbjct: 79 ETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFFA---W------ 129
Query: 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
+ ++ Y K G +K A +F+ + RN+++W +LI G A G+SE+AL F MQA G
Sbjct: 130 -SSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGF 188
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
+P+E+T VL+AC GL+D G+K M++ + + G +VD++ K G L A
Sbjct: 189 EPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNG-LVDMYAKCGDLANAR 247
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEHKQ 334
+ M N W S ++ H Q
Sbjct: 248 LIFEGM-AHRNRACWNSMISGFAIHGQ 273
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 72/146 (49%), Gaps = 9/146 (6%)
Query: 187 IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
I T LV MYAKCG + + VF+ M ERN ++W A+ICG G S+ A+ LFE M
Sbjct: 2 IGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIR- 60
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
+T+ ++ +G + R++F + E + + MVD + + +E A
Sbjct: 61 ---TAVTWIEMIDGFARSGDTETARRFFDDVPSEL---RNVVTWTVMVDGYARNAEMEAA 114
Query: 307 YEVIRTMRLEPNVIIWGSFLAA-CKE 331
EV M + N W S ++ CK+
Sbjct: 115 REVFEGMP-QRNFFAWSSMISGYCKK 139
>gi|413924746|gb|AFW64678.1| hypothetical protein ZEAMMB73_926861 [Zea mays]
Length = 655
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 145/392 (36%), Positives = 224/392 (57%), Gaps = 6/392 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF++M V D + +L +C H +L + +HS++L I +++++L+ Y
Sbjct: 238 LFAKMKNSGVVPDQLILATVLPACGHIRHLRIGKAIHSYMLVSDMIIGAHISSALISLYA 297
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+ A KL++E+P ++ V+ M+ GY+++ V AR F+ MP ++V SWSAMI+
Sbjct: 298 SCANMEMAEKLYNEMPRKDLVSSTAMVSGYARNRKVEIARSIFDGMPEKDVVSWSAMISG 357
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+++ + L LF M G+ D++T+ +V+S C++LGS L K H FI +
Sbjct: 358 YVDSNQPNEALSLFNGM-QECGIRSDEITMLSVISACANLGS--LDKAKWIHAFIKNSGL 414
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
I L+DM+AKCG + AL VF M +NVI+WT++I A G + +L LFE
Sbjct: 415 NKVLHICNALIDMFAKCGGINLALNVFNEMPLKNVITWTSMISAFAMHGDGKSSLRLFEQ 474
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M+ G +PNE+TF +L AC H GLV EGR F + ++Y +EP+ +HYGCMVDL G+A
Sbjct: 475 MKDEGAEPNEVTFLSLLYACCHAGLVHEGRLLFSSMVQQYGIEPKHEHYGCMVDLLGRAK 534
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
++EA +I +M LEPNV IWGS LAAC H + K+ L++ P +DG L+
Sbjct: 535 LMQEAVSLIESMHLEPNVPIWGSLLAACWMHGDLKLGAFAAKKILQL-DPNHDGASVLLL 593
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
+Y ++ A+ VR +M V K G S
Sbjct: 594 -KIYMKSDNLNNAQEVRGVMKLHRVSKETGLS 624
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 147/338 (43%), Gaps = 68/338 (20%)
Query: 39 HSHILKLGFISHVYVATSLLHEYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNV 97
H+ ++ G + +V T+L Y RK+FD + R+ V+W M+ Y
Sbjct: 173 HALAVRTGALDDGFVGTALAGAYAACGCVRDTRKVFDGMAVRDVVSWGVMLDSY------ 226
Query: 98 CEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSG 157
C+ R++ E L LF +M N G+ PDQ+ + VL
Sbjct: 227 CQTRNYKE-------------------------ALLLFAKM-KNSGVVPDQLILATVLPA 260
Query: 158 CSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFL---------------- 201
C H+ L +GK+ H +++ ++ + I++ L+ +YA C +
Sbjct: 261 CGHIRH--LRIGKAIHSYMLVSDMIIGAHISSALISLYASCANMEMAEKLYNEMPRKDLV 318
Query: 202 ---------------KYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
+ A +F+ M E++V+SW+A+I G +ALSLF MQ G
Sbjct: 319 SSTAMVSGYARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQPNEALSLFNGMQECG 378
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
++ +E+T V++AC + G +D+ K+ + L + ++D+F K G + A
Sbjct: 379 IRSDEITMLSVISACANLGSLDKA-KWIHAFIKNSGLNKVLHICNALIDMFAKCGGINLA 437
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
V M L+ NVI W S ++A H + R+ +Q
Sbjct: 438 LNVFNEMPLK-NVITWTSMISAFAMHGDGKSSLRLFEQ 474
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 75/160 (46%), Gaps = 5/160 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF+ M + SD ++L ++ +C + +L +H+ I G +++ +L+
Sbjct: 368 LSLFNGMQECGIRSDEITMLSVISACANLGSLDKAKWIHAFIKNSGLNKVLHICNALIDM 427
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR----NVASW 115
+ A +F+E+P +N +TW +MI ++ G+ + FE+M N ++
Sbjct: 428 FAKCGGINLALNVFNEMPLKNVITWTSMISAFAMHGDGKSSLRLFEQMKDEGAEPNEVTF 487
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155
+++ A +AG G LF M+ G+ P G ++
Sbjct: 488 LSLLYACCHAGLVHEGRLLFSSMVQQYGIEPKHEHYGCMV 527
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
P + A+L + G + + H V+ + + T L YA CG ++
Sbjct: 146 APGPRALPALLRSAARCEGAGAYVA-ATHALAVRTGALDDGFVGTALAGAYAACGCVRDT 204
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263
VF+ M R+V+SW ++ ++AL LF M+ +GV P+++ VL AC H
Sbjct: 205 RKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLLFAKMKNSGVVPDQLILATVLPACGH 263
>gi|218198855|gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indica Group]
Length = 1349
Score = 265 bits (676), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 137/395 (34%), Positives = 234/395 (59%), Gaps = 7/395 (1%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV- 62
F M + + D +++ +L +C+ +L + LHS + + G + +L+ Y
Sbjct: 228 FKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHSLVKEKGMSMSENLVVALIDMYAK 287
Query: 63 VTSFGFARKLFDELPE-RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
FG AR++FD + R +WN +I GY K G+V AR F++M +R++ ++++MI
Sbjct: 288 CGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITG 347
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+++G L LF M ++ L D T+ ++LS C+ LG+ L G++ H I
Sbjct: 348 YIHSGQLREALLLFMNMRRHD-LRVDNFTVVSLLSACASLGA--LPQGRALHACIELRLV 404
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
E + I T L+DMY KCG + A +VF+ M +R+V +WTA+I G A G + L F
Sbjct: 405 ETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQ 464
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M+ G +PN +++ VLTAC H+ L++EGR YF + Y++ P+I+HYGCM+DL G++G
Sbjct: 465 MRCDGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSG 524
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L+EA ++++TM ++PN +IW S L+AC+ HK+ D+A+ + L+ ++P+ D V+ +
Sbjct: 525 LLDEAMDLVKTMPMQPNSVIWASILSACRVHKRIDLAQCAAEHLLK-IEPDED-AVYVQL 582
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
++ + KWE A ++R LM + V+K G S ++
Sbjct: 583 YNICIDSRKWEDASKIRMLMEERQVKKTAGYSSVT 617
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 110/363 (30%), Positives = 177/363 (48%), Gaps = 46/363 (12%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVI--HHLHSHILKLGFISHV-YVATSLLH 59
LF +M R +V D F+ H L C+ + + LH+ L+ S +VA SL+H
Sbjct: 93 LFRRMRRAAVRPDGFT-FHFLFKCSSSSRPRALLCTMLHAACLRTMLPSAAPFVANSLIH 151
Query: 60 EYVVTSFGFA---RKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
Y T G A R+ FDE+P ++AV+W +I G +K G + +AR + P+R+V SW+
Sbjct: 152 MY--TELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGMLSDARLLLAQAPVRDVISWT 209
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
++IAAY A + F+ M+S EG+ PD +T+ VLS CS L + L G S H +
Sbjct: 210 SLIAAYSRADRAKEAVDCFKNMLS-EGIAPDDVTVIGVLSACSQLKDLEL--GCSLHSLV 266
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFEL-------------------------- 210
+ ++E + L+DMYAKCG +A VF+
Sbjct: 267 KEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVA 326
Query: 211 ------MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
ME R++I++ ++I G H G +AL LF M+ ++ + T +L+AC
Sbjct: 327 RSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASL 386
Query: 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324
G + +GR I+ +E I ++D++ K G + EA V + M + +V W +
Sbjct: 387 GALPQGRALHACIELRL-VETDIYIGTALLDMYMKCGRVNEATIVFQRMG-KRDVHAWTA 444
Query: 325 FLA 327
+A
Sbjct: 445 MIA 447
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 154/311 (49%), Gaps = 4/311 (1%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
T+I Y K + F +P + +++I + L +D L++ MI EG+
Sbjct: 1037 TTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITSSLRCNMFDAALEILHCMIV-EGV 1095
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
TPD +T A + S S L + H +VK +E++ + + L+ YA G L +
Sbjct: 1096 TPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSS 1155
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
++FE + + NVI +TA+I A G A+ LF+ M ++G+KP+ +TF + C
Sbjct: 1156 HLIFEGLLDPNVICFTAIISACARYGDGARAMELFDQMVSSGLKPDNVTFLCAIAGCDQA 1215
Query: 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324
G+ +EGR +++ +L+P +H+ CMV+L + GF++EA E++ L W S
Sbjct: 1216 GMFEEGRLVIELMRASRELDPDERHFACMVNLLSRDGFVKEAMEMMEQSPLRHYTKAWSS 1275
Query: 325 FLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384
L +CK H + + +R + + + D + + + E A R++++ +
Sbjct: 1276 LLQSCKAHGENVLGKRAANMLIDVGR--KDPATTLQVSNFFNDIGDRETALRIKEMTNVK 1333
Query: 385 NVRKARGSSVI 395
V+K+ G S+I
Sbjct: 1334 EVKKS-GHSLI 1343
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 89/378 (23%), Positives = 159/378 (42%), Gaps = 71/378 (18%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNN-LTVIHHLHSHILKLGFI-SHVYVATSLLHEY 61
F M RQ + + S + +K C L LH +LK G+I S+++++ SL+ Y
Sbjct: 882 FLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNIFLSNSLVDLY 941
Query: 62 --VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
+ S + L D L E + ++WN+++ Y+ G++ EA + ++M W +
Sbjct: 942 SAIGDSVDTVKALNDILSE-DVISWNSILSMYADRGHMKEAVYYLKQM------LWHGKM 994
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
P ++ F +++ G T D +G HG + K
Sbjct: 995 ----------PSIRSFVSLLALSGKTGDWQ------------------LGVQIHGIVHKL 1026
Query: 180 EWELNE-QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ + + T L+DMY KC ++L +F + + +LI S + AL +
Sbjct: 1027 GFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITSSLRCNMFDAALEI 1086
Query: 239 FEMMQATGVKPNEMTFTGV-----------LTAC--VHTGLVDEGRKYFKMIDEEYDLEP 285
M GV P+++TF+ LT+C +H+ LV G F+M +
Sbjct: 1087 LHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLG---FEM--DMAVCSS 1141
Query: 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQA 345
I Y C AG L ++ + + L+PNVI + + ++AC + A + Q
Sbjct: 1142 LITAYAC-------AGQLSSSHLIFEGL-LDPNVICFTAIISACARYGDGARAMELFDQM 1193
Query: 346 LRM-VKPENDGGVFTLIC 362
+ +KP+N T +C
Sbjct: 1194 VSSGLKPDN----VTFLC 1207
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 125/287 (43%), Gaps = 43/287 (14%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF M R + D+F+++ +L +C L LH+ I + +Y+ T+LL Y+
Sbjct: 360 LFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYM 419
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
K G V EA F+RM R+V +W+AMIA
Sbjct: 420 ------------------------------KCGRVNEATIVFQRMGKRDVHAWTAMIAGL 449
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI-VKNEW 181
G GL+ F +M +G P+ ++ AVL+ CSH L+ + F ++ +
Sbjct: 450 AFNGMGKAGLEYFYQM-RCDGFQPNPVSYIAVLTACSH----SCLLNEGRLYFDEMRILY 504
Query: 182 ELNEQIA--TILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSEDALSL 238
++ QI ++D+ + G L A+ + + M + N + W +++ SA R + L+
Sbjct: 505 NIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASIL--SACRVHKRIDLAQ 562
Query: 239 FEMMQATGVKPNE-MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLE 284
++P+E + + C+ + ++ K +M+ EE ++
Sbjct: 563 CAAEHLLKIEPDEDAVYVQLYNICIDSRKWEDASK-IRMLMEERQVK 608
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 1/156 (0%)
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
T+++ AK G L A ++ R+VISWT+LI + +++A+ F+ M + G+
Sbjct: 178 TMVISGLAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIA 237
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+++T GVL+AC ++ G ++ E+ + ++D++ K G A E
Sbjct: 238 PDDVTVIGVLSACSQLKDLELGCSLHSLVKEK-GMSMSENLVVALIDMYAKCGDFGHARE 296
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
V + W + + +H D+A + Q
Sbjct: 297 VFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQ 332
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 109/263 (41%), Gaps = 60/263 (22%)
Query: 13 PSD-SFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARK 71
P D +FS S + +LT LHS ++KLGF
Sbjct: 1097 PDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLGF------------------------ 1132
Query: 72 LFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPG 131
E + +++I Y+ +G + + FE + NV ++A+I+A G
Sbjct: 1133 ------EMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACARYGDGARA 1186
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV--GLLMGKSAHGFIVKNEWELNEQIAT 189
++LF +M+S+ GL PD +T ++GC G G L+ + E + +E+
Sbjct: 1187 MELFDQMVSS-GLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRA---SRELDPDERHFA 1242
Query: 190 ILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP 249
+V++ ++ GF+K A+ E+ME+ S R Y++ SL + +A G
Sbjct: 1243 CMVNLLSRDGFVKEAM---EMMEQ------------SPLRHYTKAWSSLLQSCKAHG--- 1284
Query: 250 NEMTFTGVLTACVHTGLVDEGRK 272
VL L+D GRK
Sbjct: 1285 -----ENVLGKRAANMLIDVGRK 1302
>gi|224136482|ref|XP_002326871.1| predicted protein [Populus trichocarpa]
gi|222835186|gb|EEE73621.1| predicted protein [Populus trichocarpa]
Length = 581
Score = 265 bits (676), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 136/327 (41%), Positives = 201/327 (61%), Gaps = 5/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR LFDE+PERN ++W +MI GY +G+V AR F+ MP +N+ SW+AMI Y
Sbjct: 218 ARSLFDEMPERNVISWTSMIYGYCNNGDVLSARFLFDAMPEKNLVSWNAMIGGYCQNKQP 277
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
LKLFRE+ S+ P+++T+ ++L + LG+ L +G+ H F+ + + + +
Sbjct: 278 HEALKLFRELQSSTVFEPNEVTVVSILPAIATLGA--LELGEWVHRFVQRKKLDAAVNVC 335
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
T LVDMY KCG + A VF + ++ +W ALI G A G + +AL F MQ G+K
Sbjct: 336 TSLVDMYLKCGEISKARKVFSEIPKKETATWNALINGFAMNGLASEALEAFSEMQQEGIK 395
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
PN++T TGVL+AC H GLV+EG+ FK + E L P+I+HYGC+VDL G+AG L+EA
Sbjct: 396 PNDITMTGVLSACSHGGLVEEGKGQFKAMIES-GLSPKIEHYGCLVDLLGRAGCLDEAEN 454
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+I++M E N II SF AC A+RV+ QA+ M +P N+ G++ ++ +LY M
Sbjct: 455 LIKSMPFEANGIILSSFSFACGFSNDVTRAQRVLNQAVNM-EPGNN-GIYVMMRNLYAME 512
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
E+W+ + + LM + +K GSS I
Sbjct: 513 ERWKDVKEINGLMRRRGAKKEVGSSAI 539
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 136/328 (41%), Gaps = 50/328 (15%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE 78
L +L+ C L IH L IL+ ++V + T + ++S AR LFD
Sbjct: 6 LFLLQRCRTRKTLLQIHAL---ILRNAIDANVNILTKFITTCGQLSSTRHARHLFDNRSH 62
Query: 79 R-NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
R + N+MIK + + +R +A L+++
Sbjct: 63 RGDTFLCNSMIKSH---------------VVMRQLAD----------------AFTLYKD 91
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
+ PD T VL+ C L + + G HG +VK + + ++T LVDMYAK
Sbjct: 92 LRRETCFVPDNFTF-TVLAKCCAL-RMAVWEGLETHGHVVKIGFCFDMYVSTALVDMYAK 149
Query: 198 CGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGV 257
G L A VF M +R+++SWTALI G RG +A LF++M + F +
Sbjct: 150 FGNLGLARKVFNDMPDRSLVSWTALIGGYVRRGDMGNAWFLFKLMPGR----DSAAFNLL 205
Query: 258 LTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG-CMVDLFGKAGFLEEAYEVIRTMRLE 316
+ V G ++ R F + E + YG C A FL +A E
Sbjct: 206 IDGYVKVGDMESARSLFDEMPERNVISWTSMIYGYCNNGDVLSARFLFDAMP-------E 258
Query: 317 PNVIIWGSFLAACKEHKQFDMAERVIKQ 344
N++ W + + ++KQ A ++ ++
Sbjct: 259 KNLVSWNAMIGGYCQNKQPHEALKLFRE 286
>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
Length = 648
Score = 265 bits (676), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 132/388 (34%), Positives = 234/388 (60%), Gaps = 8/388 (2%)
Query: 10 QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGF 68
+V D +++ + C +L + LH + G V + +++ YV S
Sbjct: 218 NAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGSLEL 277
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A +F+ + R AV+W TMI G+++ G + +AR F+ MP R+V W+A++A Y+
Sbjct: 278 ANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQG 337
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ LF EM ++ + P+++T+ +LS CS LG+ L MG H +I +++ L+ +
Sbjct: 338 KEAIALFHEMQKSK-VDPNEITMVNLLSACSQLGA--LEMGMWVHHYIDRHKLHLSVALG 394
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
T LVDMYAKCG +K A+ VF + +N ++WT++ICG A+ G++++A+ F+ M G++
Sbjct: 395 TSLVDMYAKCGNIKKAICVFNEIPVQNALTWTSMICGLANHGHADEAIEYFQRMIDLGLQ 454
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+E+TF GVL+AC H GLV+ GR++F ++ +Y LE +++HY CM+DL G+AG L+EA +
Sbjct: 455 PDEITFIGVLSACCHAGLVEAGRQFFSLMHAKYHLERKMKHYSCMIDLLGRAGHLDEAEQ 514
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE-NDGGVFTLICDLYTM 367
++ M ++P+ ++WG+ AC+ H + E K A+++V+ + +D G++ L+ ++Y
Sbjct: 515 LVNAMPMDPDAVVWGALFFACRMHGNITLGE---KAAMKLVELDPSDSGIYVLLANMYAE 571
Query: 368 NEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ A++VR +M + V K G S I
Sbjct: 572 ANMRKKADKVRVMMRHLGVEKVPGCSCI 599
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 104/377 (27%), Positives = 165/377 (43%), Gaps = 70/377 (18%)
Query: 7 MHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT-S 65
+H S D + ++K+C + + H+ KLGF + V+V + +H + V
Sbjct: 112 LHSGSARPDHLTFPFLIKACARLQYRSYGAAVLGHVQKLGFSADVFVVNAAMHFWSVRGP 171
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
FAR+LFDE P R+ V+WNT+I GY +SG EA + F R+
Sbjct: 172 MAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRL------------------ 213
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
A D + PD++T+ +SGC+ +G + L GK H F+
Sbjct: 214 -AED-----------GNAVRPDEVTVIGAVSGCAQMGDLEL--GKRLHEFVDNKGVRCTV 259
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED----------- 234
++ ++DMY KCG L+ A VFE + R +SWT +I G A G ED
Sbjct: 260 RLMNAVMDMYVKCGSLELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPER 319
Query: 235 --------------------ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF 274
A++LF MQ + V PNE+T +L+AC G ++ G
Sbjct: 320 DVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVH 379
Query: 275 KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
ID + L + +VD++ K G +++A V + ++ N + W S + H
Sbjct: 380 HYID-RHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEIPVQ-NALTWTSMICGLANHGH 437
Query: 335 FDMA----ERVIKQALR 347
D A +R+I L+
Sbjct: 438 ADEAIEYFQRMIDLGLQ 454
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 86/180 (47%), Gaps = 5/180 (2%)
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
L L+R ++ + PD +T ++ C+ L G + G + K + + +
Sbjct: 105 LPLYRALLHSGSARPDHLTFPFLIKACARLQYRSY--GAAVLGHVQKLGFSADVFVVNAA 162
Query: 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG--VKP 249
+ ++ G + +A +F+ R+V+SW LI G G +AL LF + G V+P
Sbjct: 163 MHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRP 222
Query: 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEV 309
+E+T G ++ C G ++ G++ + +D + + ++ ++D++ K G LE A V
Sbjct: 223 DEVTVIGAVSGCAQMGDLELGKRLHEFVDNK-GVRCTVRLMNAVMDMYVKCGSLELANSV 281
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 98/225 (43%), Gaps = 37/225 (16%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF +M + V + +++++L +C+ L + +H +I + V + TSL+
Sbjct: 341 IALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVALGTSLVDM 400
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + A +F+E+P +NA+TW +MI G + G+ EA ++F+RM
Sbjct: 401 YAKCGNIKKAICVFNEIPVQNALTWTSMICGLANHGHADEAIEYFQRM------------ 448
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI-VK 178
+ GL PD++T VLS C H G V G+ + K
Sbjct: 449 --------------------IDLGLQPDEITFIGVLSACCHAGLVE--AGRQFFSLMHAK 486
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTAL 222
E + + ++D+ + G L A + M + + + W AL
Sbjct: 487 YHLERKMKHYSCMIDLLGRAGHLDEAEQLVNAMPMDPDAVVWGAL 531
>gi|326518042|dbj|BAK07273.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 527
Score = 265 bits (676), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 143/395 (36%), Positives = 237/395 (60%), Gaps = 8/395 (2%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L +M R + D ++L L +C+ +L++ +H+++ + S + VA +LL YV
Sbjct: 134 LAEEMERGRLTPDRVTLLTALTACSRAGDLSLGRKIHAYMDGVTGFS-LPVANALLDMYV 192
Query: 63 VTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
A LF+++P RN V+W T++ GY+ +G V +AR F + +++ W+AMI A
Sbjct: 193 KNGCLEEAVNLFEKMPSRNVVSWTTLVSGYAFAGQVDKARLLFHQCTEKDLIMWTAMINA 252
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ G + L LFR+M ++ + PD+ T+ +L+ C++LG+ L G+ H F
Sbjct: 253 YVQHGCFIEALSLFRDMQMHQ-IEPDRFTVVTLLTCCANLGA--LDQGQLIHQFAEGRNM 309
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+L+ + T L+DMYAKCG ++ ++ VFE ME R+ +WTA+ICG A G + AL LFE
Sbjct: 310 KLDAVLGTALIDMYAKCGHVEKSVEVFERMEGRDTKAWTAIICGLATNGQAGRALELFED 369
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M+ + KP+ +TF GVL+AC H GLVDEGRK F+ + E Y + PR++HY C+V+L G+AG
Sbjct: 370 MERSEAKPDSVTFIGVLSACCHGGLVDEGRKQFRAMKEVYRIRPRVEHYSCLVNLLGRAG 429
Query: 302 FLEEAYEVIRTMRLEPNVI-IWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
L+EA ++I+++ + + + ++G+ + ACK M+ER+ K+ + D V L
Sbjct: 430 QLDEAEKLIKSIPINKDAMPLFGALITACKAQGNVKMSERLTKRIGKQGYQIPD--VNLL 487
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y +WE RVR M + +V+K G S+I
Sbjct: 488 MSNVYATASRWEDVVRVRSKMAHPSVKKNAGCSLI 522
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 147/345 (42%), Gaps = 68/345 (19%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
M ++ + + + +DSF+ +L++ H+ LK GF Y A+SL+
Sbjct: 31 MAVYYDLRERGLVADSFTYPFVLRAIGALQISVEGRKAHAATLKTGFRWDAYTASSLMDM 90
Query: 61 Y-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y ++ ARK+FDE+P+R V WN M++ Y + G EA E M
Sbjct: 91 YTMLGRLEAARKVFDEMPQRAVVVWNMMLRCYVRCGRNTEAVALAEEM------------ 138
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
LTPD++T+ L+ CS G + L G+ H ++
Sbjct: 139 --------------------ERGRLTPDRVTLLTALTACSRAGDLSL--GRKIHAYM-DG 175
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE------ 233
+ +A L+DMY K G L+ A+ +FE M RNV+SWT L+ G A G +
Sbjct: 176 VTGFSLPVANALLDMYVKNGCLEEAVNLFEKMPSRNVVSWTTLVSGYAFAGQVDKARLLF 235
Query: 234 -------------------------DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
+ALSLF MQ ++P+ T +LT C + G +D
Sbjct: 236 HQCTEKDLIMWTAMINAYVQHGCFIEALSLFRDMQMHQIEPDRFTVVTLLTCCANLGALD 295
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
+G + E +++ ++D++ K G +E++ EV M
Sbjct: 296 QG-QLIHQFAEGRNMKLDAVLGTALIDMYAKCGHVEKSVEVFERM 339
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 7/207 (3%)
Query: 139 ISNEGLTPDQMTIGAVLSGCSHLGSVGL-LMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
+ GL D T VL +G++ + + G+ AH +K + + A+ L+DMY
Sbjct: 37 LRERGLVADSFTYPFVLRA---IGALQISVEGRKAHAATLKTGFRWDAYTASSLMDMYTM 93
Query: 198 CGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGV 257
G L+ A VF+ M +R V+ W ++ G + +A++L E M+ + P+ +T
Sbjct: 94 LGRLEAARKVFDEMPQRAVVVWNMMLRCYVRCGRNTEAVALAEEMERGRLTPDRVTLLTA 153
Query: 258 LTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEP 317
LTAC G + GRK +D + + ++D++ K G LEEA + M
Sbjct: 154 LTACSRAGDLSLGRKIHAYMDGVTGFSLPVAN--ALLDMYVKNGCLEEAVNLFEKMP-SR 210
Query: 318 NVIIWGSFLAACKEHKQFDMAERVIKQ 344
NV+ W + ++ Q D A + Q
Sbjct: 211 NVVSWTTLVSGYAFAGQVDKARLLFHQ 237
>gi|222624265|gb|EEE58397.1| hypothetical protein OsJ_09562 [Oryza sativa Japonica Group]
Length = 523
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 142/412 (34%), Positives = 232/412 (56%), Gaps = 41/412 (9%)
Query: 12 VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL------------- 58
V D + +L++CT +H+H++K G S +V +L+
Sbjct: 78 VRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAA 137
Query: 59 -------HEYVVT------------SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCE 99
E V G AR LFDE P ++ V+WN MI Y+K G++
Sbjct: 138 ALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMAL 197
Query: 100 ARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCS 159
AR+ F+++P R+V SW+ MI+ Y+ G++ L+LF +M G PD +T+ ++LS C+
Sbjct: 198 ARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQM-QRMGEKPDIVTMLSLLSACA 256
Query: 160 HLGS--VGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVI 217
G VG + S +N + + + L+DMYAKCG +K A VF M +++V
Sbjct: 257 DSGDLDVGQRLHSSLSDMFSRNGFPV--VLGNALIDMYAKCGSMKSAHEVFWSMRDKDVS 314
Query: 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI 277
+W +++ G A G+ +++ +FE M V+P+E+TF VL AC H G+VD+GR++F ++
Sbjct: 315 TWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLM 374
Query: 278 DEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDM 337
+Y +EP I+HYGCMVD+ G+AG L+EA+E I TM+ EPN +IW + L+AC+ H + ++
Sbjct: 375 QHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGEIEL 434
Query: 338 AERVIKQALRMVKPEND-GGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRK 388
A+ +Q ++K ND G + L+ ++Y +W G+E++RKLM + V K
Sbjct: 435 AKHANRQ---LLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMDDSGVNK 483
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/352 (23%), Positives = 159/352 (45%), Gaps = 61/352 (17%)
Query: 40 SHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCE 99
S + +L F S V V ++ H Y+V FD++P + +NT+I+G + + +
Sbjct: 11 SELRELLFASAVAVRGAIAHAYLV---------FDQIPRPDRFMYNTLIRGAAHTAAPRD 61
Query: 100 ARDFFERMPLR--------NVASWSAMIAAYLNAGAYDPGLKLFREMI------------ 139
A + RM R + ++ ++ A GA D G+++ ++
Sbjct: 62 AVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKN 121
Query: 140 ---------SNEGLTP---------DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
N G+ D + A+++GC+ G +G +A +E
Sbjct: 122 ALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIG-----AARDLF--DEC 174
Query: 182 ELNEQIA-TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ + ++ +++ YAK G + A +F+ + ER+V+SW +I G G AL LFE
Sbjct: 175 PVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFE 234
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG-CMVDLFGK 299
MQ G KP+ +T +L+AC +G +D G++ + + + G ++D++ K
Sbjct: 235 QMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAK 294
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH----KQFDMAERVIKQALR 347
G ++ A+EV +MR + +V W S + H + DM E+++K +R
Sbjct: 295 CGSMKSAHEVFWSMR-DKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVR 345
>gi|297849216|ref|XP_002892489.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338331|gb|EFH68748.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1014
Score = 264 bits (675), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 147/404 (36%), Positives = 224/404 (55%), Gaps = 12/404 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ FS M + + +D ++ +LKSC+ ++L +H +++ GF V ++
Sbjct: 609 LSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFGKCVHGEVIRTGFHRLGKVRIGVVEL 668
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y G A+K+FDE+PERN V WN M++G+ SG+V FF++M R++ SW++MI
Sbjct: 669 YTSGGRMGDAQKVFDEMPERNVVVWNLMVRGFCDSGDVQRGLSFFKQMSERSIVSWNSMI 728
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
++ G L+LF EMI ++G PD+ T+ +L + LG L GK H N
Sbjct: 729 SSLSKCGRDREALELFCEMI-DQGFDPDEATVVTMLPISASLGV--LDTGKWIHSTAESN 785
Query: 180 EWELNEQIATI---LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
L + T+ LVD Y K G L+ A +F M+ RNV+SW +I GSA G E +
Sbjct: 786 G--LIKDFITVGNALVDFYCKSGDLEAATAIFRKMQRRNVVSWNTMISGSAVNGKGESGI 843
Query: 237 SLFEMMQATG-VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
LF+ M G V PNE TF GVL C +TG V+ G + F ++ E + LEPR +HYG MVD
Sbjct: 844 DLFDAMIEEGKVAPNEATFLGVLACCSYTGQVERGEELFGLMMERFKLEPRTEHYGAMVD 903
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
L ++G + EA+E +R M + N +WGS L+AC+ H +AE + ++ ++P N G
Sbjct: 904 LMSRSGRIREAFEFLRNMPVNANAAMWGSLLSACRSHGDVKLAELAAMELVK-IEPGNSG 962
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLS 399
+ L+ +LY +W+ E+VR LM +RK G S I +S
Sbjct: 963 N-YVLLSNLYAEEGRWQDVEKVRTLMKKNCLRKTTGQSTICDVS 1005
>gi|242059435|ref|XP_002458863.1| hypothetical protein SORBIDRAFT_03g041710 [Sorghum bicolor]
gi|241930838|gb|EES03983.1| hypothetical protein SORBIDRAFT_03g041710 [Sorghum bicolor]
Length = 544
Score = 264 bits (675), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 136/348 (39%), Positives = 202/348 (58%), Gaps = 7/348 (2%)
Query: 51 VYVATSLLHEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL 109
V T L+H YV AR++FD +P RNA W++M+ GY K+GN EA+ F R+P
Sbjct: 186 VVTWTVLVHGYVSAGDMEAAREVFDRMPARNAFVWSSMVTGYFKAGNAEEAQAVFHRIPT 245
Query: 110 RNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMG 169
RN+ +W+A+IA Y G + L+ F M+ E + PD+ T+ ++LS C+ LGS L G
Sbjct: 246 RNLVNWNALIAGYAQIGCSEKALEAFDSML-QERVKPDEFTMASLLSACAQLGS--LEQG 302
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR 229
K H FI + N + L+DMYAKCG L YA +F+ M +N W +I A
Sbjct: 303 KKVHDFINREHIRKNHFVLNGLIDMYAKCGDLVYARYIFDGMRWKNTECWNTMISALASH 362
Query: 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQH 289
G S++AL LF M+ +G PN +T VL AC H G VDEG + F +D Y +E ++H
Sbjct: 363 GRSDEALHLFFQMEHSGQTPNTITVLAVLGACTHGGFVDEGLRIFNKLD-AYGVEAGVEH 421
Query: 290 YGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM- 348
YGC+VDL G+AG L+EAYE+++ M EPN +IWGS L AC+ H +M+ V + R+
Sbjct: 422 YGCLVDLLGRAGKLKEAYEIVKNMPEEPNEVIWGSLLGACRVHGDAEMSRLVTDEIHRLH 481
Query: 349 -VKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
V ++ + ++ ++ +++WE AE++R+ M V K S +
Sbjct: 482 SVHASSNDAEYIMLSNIMAASKRWEQAEQIRRKMARHGVEKTPACSSL 529
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 131/284 (46%), Gaps = 28/284 (9%)
Query: 79 RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM 138
R+ + T++ Y K G + +AR F+ MP RNV S++A++A Y AG D L LF M
Sbjct: 89 RDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVISYNALLAGYAAAGDMDGALALFGGM 148
Query: 139 ISNEGLTPDQMTIGAVLSG----------CSHLGSVGLLMGKS-AHGFIVKNEWEL---- 183
S +T + G G + G ++ HG++ + E
Sbjct: 149 RSWTYVTWATLIRGFAKKGDMAEARRWFETTPPGMRTVVTWTVLVHGYVSAGDMEAAREV 208
Query: 184 -------NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
N + + +V Y K G + A VF + RN+++W ALI G A G SE AL
Sbjct: 209 FDRMPARNAFVWSSMVTGYFKAGNAEEAQAVFHRIPTRNLVNWNALIAGYAQIGCSEKAL 268
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHY--GCMV 294
F+ M VKP+E T +L+AC G +++G+K I+ E+ R H+ ++
Sbjct: 269 EAFDSMLQERVKPDEFTMASLLSACAQLGSLEQGKKVHDFINREH---IRKNHFVLNGLI 325
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
D++ K G L A + MR + N W + ++A H + D A
Sbjct: 326 DMYAKCGDLVYARYIFDGMRWK-NTECWNTMISALASHGRSDEA 368
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 8/159 (5%)
Query: 168 MGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSA 227
+GKS H +K+ + + + T +V MY KCG L A F+ M +RNVIS+ AL+ G A
Sbjct: 74 LGKSLHAEALKSAFARDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVISYNALLAGYA 133
Query: 228 HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRI 287
G + AL+LF M++ +T+ ++ G + E R++F+ +
Sbjct: 134 AAGDMDGALALFGGMRSW----TYVTWATLIRGFAKKGDMAEARRWFETTPPGMRT---V 186
Query: 288 QHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
+ +V + AG +E A EV M N +W S +
Sbjct: 187 VTWTVLVHGYVSAGDMEAAREVFDRMPAR-NAFVWSSMV 224
>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 601
Score = 264 bits (675), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 131/342 (38%), Positives = 201/342 (58%), Gaps = 6/342 (1%)
Query: 55 TSLLHEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA 113
++L YV V A KLFDE+PERN V+W+TM+ GY K+G++ AR F++MP++N+
Sbjct: 222 NTMLDGYVKVGKMDDAFKLFDEMPERNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLV 281
Query: 114 SWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH 173
SW+ +++ + G + LF +M L D T+ ++L+ C+ G +GL G+ H
Sbjct: 282 SWTIIVSGFAEKGLAREAISLFDQM-EKACLKLDNGTVMSILAACAESGLLGL--GEKIH 338
Query: 174 GFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE 233
I N ++ +I+ LVDMYAKCG L A VF ++ ++V+SW A++ G A G+
Sbjct: 339 ASIKNNNFKCTTEISNALVDMYAKCGRLNIAYDVFNDIKNKDVVSWNAMLQGLAMHGHGV 398
Query: 234 DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293
AL LF+ M+ G PN++T GVL AC H GL+D+G +YF ++ +Y L P ++HYGCM
Sbjct: 399 KALELFKRMKEEGFSPNKVTMIGVLCACTHAGLIDDGIRYFSTMERDYTLVPEVEHYGCM 458
Query: 294 VDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353
VDL G+ G LEEA +IR M + PN IIWG+ L AC+ H ++A V+ + +
Sbjct: 459 VDLLGRKGRLEEAIRLIRNMPMAPNAIIWGTLLGACRMHNAVELAREVLDHLVEL--EPT 516
Query: 354 DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
D G F+++ ++Y W R M + +K G+S I
Sbjct: 517 DSGNFSMLSNIYAAAGDWNCVANTRLRMRSIGTKKPSGASSI 558
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 98/333 (29%), Positives = 155/333 (46%), Gaps = 48/333 (14%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV- 62
F M R +D+F+ +LK CT L VI +H+ I K GF+S V+V SL+ Y
Sbjct: 106 FFAMQRDGHYADNFTFPFLLKVCTGNVWLPVIESVHAQIEKFGFMSDVFVPNSLIDSYSK 165
Query: 63 VTSFGF--ARKLFDEL-PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
S G A+KLF + R+ V+WN+MI G +K G EAR F+ MP ++ SW+ M+
Sbjct: 166 CGSCGISAAKKLFVSMGARRDVVSWNSMISGLAKGGLYEEARKVFDEMPEKDGISWNTML 225
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y+ G D KLF EM ++ M +G
Sbjct: 226 DGYVKVGKMDDAFKLFDEMPERNVVSWSTMVLG--------------------------- 258
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
Y K G ++ A M+F+ M +N++SWT ++ G A +G + +A+SLF
Sbjct: 259 ---------------YCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLF 303
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+ M+ +K + T +L AC +GL+ G K I + + + + +VD++ K
Sbjct: 304 DQMEKACLKLDNGTVMSILAACAESGLLGLGEKIHASI-KNNNFKCTTEISNALVDMYAK 362
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
G L AY+V ++ +V+ W + L H
Sbjct: 363 CGRLNIAYDVFNDIK-NKDVVSWNAMLQGLAMH 394
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 73/152 (48%), Gaps = 5/152 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF QM + + D+ +++ IL +C L + +H+ I F ++ +L+
Sbjct: 300 ISLFDQMEKACLKLDNGTVMSILAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDM 359
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR----NVASW 115
Y A +F+++ ++ V+WN M++G + G+ +A + F+RM N +
Sbjct: 360 YAKCGRLNIAYDVFNDIKNKDVVSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNKVTM 419
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPD 147
++ A +AG D G++ F M + L P+
Sbjct: 420 IGVLCACTHAGLIDDGIRYFSTMERDYTLVPE 451
>gi|115452665|ref|NP_001049933.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|108707812|gb|ABF95607.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548404|dbj|BAF11847.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|125586044|gb|EAZ26708.1| hypothetical protein OsJ_10614 [Oryza sativa Japonica Group]
Length = 648
Score = 264 bits (675), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 144/401 (35%), Positives = 234/401 (58%), Gaps = 11/401 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LFS M + P D ++ ++ +C H + G S + V +L+H
Sbjct: 251 LALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHM 310
Query: 61 YVVTSF---GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
Y +SF AR+LFD + +WN+MI GY K+G+V +A++ F MP ++ SW+
Sbjct: 311 Y--SSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTT 368
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MI+ + L +F M + +G+ PD++T+ +V+S C+++ S L GKS H +I
Sbjct: 369 MISGCVQNDQSSEALTIFNNMQA-QGIKPDEVTLVSVISACTNMSS--LEQGKSMHEYIR 425
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
++++ + + T L+DMY KCG L+ AL VF+ MEER W A+I G A G +L
Sbjct: 426 EHQYTITVILGTSLIDMYMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLD 485
Query: 238 LF-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
+F EM ++ PNE+TFTGVL+AC H GLV+EG+ +FK++ +Y + P I+HYGCMVDL
Sbjct: 486 MFSEMESSSTATPNEITFTGVLSACRHAGLVEEGQHFFKLMQHKYHIIPNIRHYGCMVDL 545
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
G+AG+++EA +I +M + P+V WG+ L +C +H ++ ERV ++ + + P +D G
Sbjct: 546 LGRAGYVKEAENLIESMPMSPDVPAWGALLGSCWKHGDNEVGERVGRKLVNL-DPHHD-G 603
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
T++ ++Y W+ + +R M +V K GSSV+ S
Sbjct: 604 FHTMLSNIYASEGMWQHVKDLRGSMKQWHVPKIPGSSVVES 644
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 99/389 (25%), Positives = 169/389 (43%), Gaps = 71/389 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L++ M S D ++ + +C + +H H ++ GF ++Y+A +L+
Sbjct: 91 LPLYASM---SAAPDCYTHTILAAACATRRAIEEGRQVHCHAVRHGFGRNLYLANALMSM 147
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA------ 113
Y G ARK+FD P +AV+WNT++ Y ++ +V +A F RMP R A
Sbjct: 148 YSACGCLGDARKVFDAGPVWDAVSWNTILAAYVQAEDVDQAVGVFARMPERGAAAVSSMV 207
Query: 114 -------------------------SWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ 148
+W+AMI+ + G + L LF +M EG D+
Sbjct: 208 SLFGRRGMVDEARKVFDVVERKDVFTWTAMISCFQRNGKFAEALALFSDM-RGEGWPVDE 266
Query: 149 MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW--ELNEQIATI---------------- 190
+ V++ C+ L G+ HG + LN Q A I
Sbjct: 267 AVMVCVVAACARLEVT--RNGEMCHGLAFRAGLGSRLNVQNALIHMYSSFLNVVAARRLF 324
Query: 191 -------------LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
++ Y K G +K A +F +M +++ +SWT +I G S +AL+
Sbjct: 325 DSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEALT 384
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
+F MQA G+KP+E+T V++AC + +++G+ + I E+ + ++D++
Sbjct: 385 IFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYI-REHQYTITVILGTSLIDMY 443
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
K G LE A EV TM E W + +
Sbjct: 444 MKCGCLESALEVFDTME-ERGTPCWNAVI 471
>gi|195651797|gb|ACG45366.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 544
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 136/348 (39%), Positives = 205/348 (58%), Gaps = 7/348 (2%)
Query: 51 VYVATSLLHEYVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL 109
V T L+ YV AR++FD +P RNA W++M+ GY K+G+ EAR F+R+P
Sbjct: 186 VVTWTVLVQGYVCAGDMETAREVFDRMPARNAFVWSSMVTGYFKAGDAEEARAVFDRIPT 245
Query: 110 RNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMG 169
RN+ +W+A+IA Y G + L+ F M+ E + PD+ T+ ++LS C+ LGS L G
Sbjct: 246 RNLVNWNALIAGYAQIGCSEQALEAFHLML-QERVKPDEFTMASLLSACAQLGS--LEQG 302
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR 229
K H FI + N + L+DMYAKCG L +A +F+ M +N W +I A
Sbjct: 303 KKVHDFINQEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDSMRWKNNECWNTMISALASH 362
Query: 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQH 289
G S++AL LF M+ +G KPN +T VL AC H G VDEG + F +D Y + ++H
Sbjct: 363 GQSDEALHLFFQMERSGRKPNTITVLAVLGACTHGGFVDEGLQIFNKLD-AYGVGAGVEH 421
Query: 290 YGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM- 348
YGC+VDL G+AG L+EAYE++ M EPN +IWGS L AC+ H+ +M+ V ++ LR+
Sbjct: 422 YGCLVDLLGRAGKLKEAYEIVNNMSEEPNEVIWGSLLGACRVHRDAEMSRLVTEEILRLH 481
Query: 349 -VKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++ + ++ ++ +E+WE AE++R+ M + V K G S +
Sbjct: 482 SFHASSNDAEYIMLANIMAASERWEQAEQMRRKMARRGVEKTPGCSSL 529
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/330 (27%), Positives = 149/330 (45%), Gaps = 40/330 (12%)
Query: 64 TSFGFARKLFDELPE----RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
T G + L E + R+ + T++ Y K G + +AR F+ MP RNV S++A++
Sbjct: 70 TELGLGKSLHAEALKSAFARDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVISYNALL 129
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIG---------------AVLSGCSHLGSV 164
A Y AG D L LF M S +T + G A G + +
Sbjct: 130 AGYAVAGDMDGALALFGGMRSWTHVTWATLIRGFAEKGDMAEARRWFEATPPGMRTVVTW 189
Query: 165 GLLMGKSAHGFIVKNEWEL-----------NEQIATILVDMYAKCGFLKYALMVFELMEE 213
+L+ G++ + E N + + +V Y K G + A VF+ +
Sbjct: 190 TVLV----QGYVCAGDMETAREVFDRMPARNAFVWSSMVTGYFKAGDAEEARAVFDRIPT 245
Query: 214 RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKY 273
RN+++W ALI G A G SE AL F +M VKP+E T +L+AC G +++G+K
Sbjct: 246 RNLVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTMASLLSACAQLGSLEQGKKV 305
Query: 274 FKMIDEEYDLEPRIQHY--GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKE 331
I++E+ R H+ ++D++ K G L A + +MR + N W + ++A
Sbjct: 306 HDFINQEH---IRKNHFVMNGLIDMYAKCGDLAHARYIFDSMRWKNNE-CWNTMISALAS 361
Query: 332 HKQFDMAERVIKQALRMVKPENDGGVFTLI 361
H Q D A + Q R + N V ++
Sbjct: 362 HGQSDEALHLFFQMERSGRKPNTITVLAVL 391
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 8/182 (4%)
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
T Q + +L + L +GKS H +K+ + + + T +V MY KCG L A
Sbjct: 51 THHQPLLPVLLKAAAASSPTELGLGKSLHAEALKSAFARDLLVGTTIVSMYCKCGALADA 110
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
F+ M +RNVIS+ AL+ G A G + AL+LF M++ +T+ ++
Sbjct: 111 RRAFDEMPDRNVISYNALLAGYAVAGDMDGALALFGGMRSW----THVTWATLIRGFAEK 166
Query: 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324
G + E R++F+ + + +V + AG +E A EV M N +W S
Sbjct: 167 GDMAEARRWFEATPPGMRT---VVTWTVLVQGYVCAGDMETAREVFDRMPAR-NAFVWSS 222
Query: 325 FL 326
+
Sbjct: 223 MV 224
>gi|125543615|gb|EAY89754.1| hypothetical protein OsI_11297 [Oryza sativa Indica Group]
Length = 648
Score = 264 bits (674), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 144/401 (35%), Positives = 234/401 (58%), Gaps = 11/401 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LFS M + P D ++ ++ +C H + G S + V +L+H
Sbjct: 251 LALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHM 310
Query: 61 YVVTSF---GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
Y +SF AR+LFD + +WN+MI GY K+G+V +A++ F MP ++ SW+
Sbjct: 311 Y--SSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTT 368
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MI+ + L +F M + +G+ PD++T+ +V+S C+++ S L GKS H +I
Sbjct: 369 MISGCVQNDQSSEALTIFNNMQA-QGIKPDEVTLVSVISACTNMSS--LEQGKSMHEYIR 425
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
++++ + + T L+DMY KCG L+ AL VF+ MEER W A+I G A G +L
Sbjct: 426 EHQYTITVILGTSLIDMYMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLD 485
Query: 238 LF-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
+F EM ++ PNE+TFTGVL+AC H GLV+EG+ +FK++ +Y + P I+HYGCMVDL
Sbjct: 486 MFSEMESSSTATPNEITFTGVLSACRHAGLVEEGQHFFKLMQHKYHIIPNIRHYGCMVDL 545
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
G+AG+++EA +I +M + P+V WG+ L +C +H ++ ERV ++ + + P +D G
Sbjct: 546 LGRAGYVKEAENLIESMPMSPDVPAWGALLGSCWKHGDNEVGERVGRKLVNL-DPHHD-G 603
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
T++ ++Y W+ + +R M +V K GSSV+ S
Sbjct: 604 FHTMLSNIYASEGMWQHVKDLRGSMKQWHVPKIPGSSVVES 644
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/389 (24%), Positives = 167/389 (42%), Gaps = 71/389 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L++ M S D ++ + +C + +H H ++ GF ++Y+A +L+
Sbjct: 91 LPLYASM---SAAPDCYTHTILAAACATRRAIEEGRQVHCHAVRHGFGRNLYLANALMSM 147
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA------ 113
Y G ARK+FD P +AV+WNT++ Y ++ +V +A F RMP R A
Sbjct: 148 YSACGCLGDARKVFDAGPVWDAVSWNTILAAYVQAEDVDQAVGVFARMPERGAAAVSSMV 207
Query: 114 -------------------------SWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ 148
+W+AMI+ + G + L LF +M EG D+
Sbjct: 208 SLFGRRGMVDEARKVFDGVERKDVFTWTAMISCFQRNGKFAEALALFSDM-RGEGWPVDE 266
Query: 149 MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA------------ 196
+ V++ C+ L G+ HG + + L+ MY+
Sbjct: 267 AVMVCVVAACARLEVT--RNGEMCHGLAFRAGLGSRLNVQNALIHMYSSFLNVVAARRLF 324
Query: 197 -------------------KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
K G +K A +F +M +++ +SWT +I G S +AL+
Sbjct: 325 DSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEALT 384
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
+F MQA G+KP+E+T V++AC + +++G+ + I E+ + ++D++
Sbjct: 385 IFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYI-REHQYTITVILGTSLIDMY 443
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
K G LE A EV TM E W + +
Sbjct: 444 MKCGCLESALEVFDTME-ERGTPCWNAVI 471
>gi|357123975|ref|XP_003563682.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Brachypodium distachyon]
Length = 527
Score = 264 bits (674), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 141/397 (35%), Positives = 238/397 (59%), Gaps = 8/397 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L +M R + D +++ + C+ +L++ +H+++ + F + VA +LL
Sbjct: 132 IALAEEMERSGLTPDKVTLVTSVTVCSRAGDLSLGRRIHAYMDGV-FGFSLPVANALLDM 190
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y+ A KLF+++P RN ++W ++ GY+ +G + +AR F + +++ W+AMI
Sbjct: 191 YMKNGCLEEAVKLFEQMPSRNIISWTILVSGYAFAGQLDKARVLFYQCSEKDLIMWTAMI 250
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A + G ++ L LFREM + + PD+ TI +L+ C++LG+ L G+ H F V
Sbjct: 251 NACVQHGCFEEALSLFREM-QMQRVEPDRFTIVTLLTCCANLGA--LDQGEWIHQFAVDR 307
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ +++ + T L+DMYAKCG +K ++ VFE M+ R+ +WT++ICG A G + AL LF
Sbjct: 308 KMKVDAVLGTALIDMYAKCGHVKKSMEVFEQMQGRDTTAWTSIICGLATNGQAGRALELF 367
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
E M+ + VKP+ +TF GVL+AC H GLVDEGRK F + + Y + PRI+HY C+V+L G+
Sbjct: 368 EDMERSKVKPDSITFIGVLSACCHGGLVDEGRKQFHAMKDVYRIPPRIEHYSCLVNLLGR 427
Query: 300 AGFLEEAYEVIRTMRLEPNVI-IWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
AG L+EA ++IR +++ + + ++G+ L ACK +M+ER+ K+ D V
Sbjct: 428 AGLLDEAEKLIRDIQINKDAMPLFGALLTACKAQGNVEMSERLTKRIGEQGYQIPD--VN 485
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y +WE A RVR M + ++K G S+I
Sbjct: 486 LLMSNVYATASRWEDAIRVRSKMAHPTIKKTAGCSLI 522
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 99/397 (24%), Positives = 167/397 (42%), Gaps = 72/397 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
M ++ + + + +DSF+ +L++ H+ +K GF Y A+SL+
Sbjct: 31 MAVYYDLRGRGLVADSFTYPFVLRAIGVLKLSVEGRKAHAAAMKTGFWWDAYTASSLMDM 90
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
Y + G AR F+ MP R + W+ MI
Sbjct: 91 YTLL------------------------------GRADVARKLFDEMPHRALVVWNMMIR 120
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y+ G Y + L EM GLTPD++T+ ++ CS G + L G+ H ++
Sbjct: 121 CYVRCGRYTAAIALAEEM-ERSGLTPDKVTLVTSVTVCSRAGDLSL--GRRIHAYM-DGV 176
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSA------------- 227
+ + +A L+DMY K G L+ A+ +FE M RN+ISWT L+ G A
Sbjct: 177 FGFSLPVANALLDMYMKNGCLEEAVKLFEQMPSRNIISWTILVSGYAFAGQLDKARVLFY 236
Query: 228 ------------------HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
G E+ALSLF MQ V+P+ T +LT C + G +D+
Sbjct: 237 QCSEKDLIMWTAMINACVQHGCFEEALSLFREMQMQRVEPDRFTIVTLLTCCANLGALDQ 296
Query: 270 GRKYFKM-IDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
G + +D + ++ + ++D++ K G ++++ EV M+ + W S +
Sbjct: 297 GEWIHQFAVDRKMKVDAVLGT--ALIDMYAKCGHVKKSMEVFEQMQGR-DTTAWTSIICG 353
Query: 329 CKEHKQFDMAERVIKQALR-MVKPENDG--GVFTLIC 362
+ Q A + + R VKP++ GV + C
Sbjct: 354 LATNGQAGRALELFEDMERSKVKPDSITFIGVLSACC 390
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 126/288 (43%), Gaps = 41/288 (14%)
Query: 107 MPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGL 166
MPLR+ + +I G++ + ++ ++ GL D T VL +G + L
Sbjct: 9 MPLRDC---NLLIRTLARRGSFARVMAVYYDL-RGRGLVADSFTYPFVLRA---IGVLKL 61
Query: 167 -LMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICG 225
+ G+ AH +K + + A+ L+DMY G A +F+ M R ++ W +I
Sbjct: 62 SVEGRKAHAAAMKTGFWWDAYTASSLMDMYTLLGRADVARKLFDEMPHRALVVWNMMIRC 121
Query: 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP 285
G A++L E M+ +G+ P+++T +T C G + GR+ +D +
Sbjct: 122 YVRCGRYTAAIALAEEMERSGLTPDKVTLVTSVTVCSRAGDLSLGRRIHAYMDGVFGFSL 181
Query: 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTM------------------------RL------ 315
+ + ++D++ K G LEEA ++ M R+
Sbjct: 182 PVAN--ALLDMYMKNGCLEEAVKLFEQMPSRNIISWTILVSGYAFAGQLDKARVLFYQCS 239
Query: 316 EPNVIIWGSFLAACKEHKQFDMAERVIKQ-ALRMVKPENDGGVFTLIC 362
E ++I+W + + AC +H F+ A + ++ ++ V+P+ V L C
Sbjct: 240 EKDLIMWTAMINACVQHGCFEEALSLFREMQMQRVEPDRFTIVTLLTC 287
>gi|297737154|emb|CBI26355.3| unnamed protein product [Vitis vinifera]
Length = 550
Score = 264 bits (674), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 147/434 (33%), Positives = 233/434 (53%), Gaps = 54/434 (12%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH-EY 61
LF QM R+ + +F+I +LK+ ++ GF ++
Sbjct: 88 LFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVY------GFAFDEMCEKDIVSWNM 141
Query: 62 VVTSFG------FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASW 115
+++ +G ARK FD +PERN V+W +MI GY K+G++ EA+ F+ MP++++ASW
Sbjct: 142 MISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASW 201
Query: 116 SAMIAAYLNAGAYDPGLK-LFREM------------------------------ISNEGL 144
+ M++ Y++ G Y G + LF +M + +
Sbjct: 202 NVMVSGYMDIGDYTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDI 261
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI---VKNEWELNEQIATILVDMYAKCGFL 201
PD+ I ++S CS LG + +A I V + ++ T L+DMYAKCG +
Sbjct: 262 KPDETFILGIISACSQLGII-----DAAESIIHNYVGPSLLSDLRVFTSLIDMYAKCGSI 316
Query: 202 KYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261
+ AL +FE+ ++++ ++ +I A+ G DA+ LF+ MQ +KP+ +TF GVLTAC
Sbjct: 317 EKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTAC 376
Query: 262 VHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVII 321
H GLVDEGRKYFK + EE+ ++P +HY C+VDL G+ G LEEAY +IR M + P+ ++
Sbjct: 377 NHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVV 436
Query: 322 WGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLM 381
WG+ LAAC+ H +AE V L ++P+N G + L+ ++Y +W +VR +
Sbjct: 437 WGALLAACRVHCNVQLAE-VAAAELFKIEPDNSGN-YILLSNIYAAAGRWGSVAKVRAKI 494
Query: 382 LNQNVRKARGSSVI 395
VRK RGSS I
Sbjct: 495 REHRVRKNRGSSWI 508
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 86/360 (23%), Positives = 150/360 (41%), Gaps = 66/360 (18%)
Query: 19 ILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDE 75
ILHI+ +C +L IH +++ S +V LL Y + FG +A K+FDE
Sbjct: 5 ILHIIHNCKTLKSLKSIHA--RLLIESSVASSEFVINKLLRLY--SRFGATDYAHKVFDE 60
Query: 76 LPERNAVTWNTMIKGYSKSGNVCEARDFF---ERMPL----------------------- 109
+ + NA W ++I GY ++ EA F R P+
Sbjct: 61 ITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGG 120
Query: 110 -------------RNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLS 156
+++ SW+ MI+ Y N D K F M ++ M G V +
Sbjct: 121 QAVYGFAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKA 180
Query: 157 GCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG-FLKYALMVFELMEERN 215
G + +L VK+ N ++V Y G + A +F+ M +N
Sbjct: 181 G--DMAEAQVLFDSMP----VKDLASWN-----VMVSGYMDIGDYTNGARCLFDQMPMKN 229
Query: 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275
+++W+ +I G A G AL LFE + +KP+E G+++AC G++D
Sbjct: 230 LVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAES--- 286
Query: 276 MIDEEY---DLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
I Y L ++ + ++D++ K G +E+A ++ M +++ + + +AA H
Sbjct: 287 -IIHNYVGPSLLSDLRVFTSLIDMYAKCGSIEKALQMFE-MAHPKDLLCYSTMIAALANH 344
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 31/164 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF + Q + D IL I+ +C+ +LG I A S++H
Sbjct: 250 LELFERFKEQDIKPDETFILGIISACS----------------QLGIID---AAESIIHN 290
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
YV S ++F ++I Y+K G++ +A FE +++ +S MIA
Sbjct: 291 YVGPSLLSDLRVF-----------TSLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIA 339
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV 164
A N G + LF +M + PD +T VL+ C+H G V
Sbjct: 340 ALANHGLGRDAIFLFDKM-QRANIKPDSVTFLGVLTACNHGGLV 382
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 81/187 (43%), Gaps = 10/187 (5%)
Query: 154 VLSGCSHLGSVGLLMGKSAHG-FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME 212
++ C L S+ KS H ++++ +E + L+ +Y++ G YA VF+ +
Sbjct: 8 IIHNCKTLKSL-----KSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEIT 62
Query: 213 ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK 272
+ N WT+LI G ++A SLF M+ + T + VL A G+
Sbjct: 63 QPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQA 122
Query: 273 YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
+ +E E I + M+ +G ++ A + M E NV+ W S + C
Sbjct: 123 VYGFAFDEM-CEKDIVSWNMMISGYGNNDRVDIARKFFDRMP-ERNVVSWTSMI--CGYV 178
Query: 333 KQFDMAE 339
K DMAE
Sbjct: 179 KAGDMAE 185
>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
Length = 452
Score = 264 bits (674), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 139/328 (42%), Positives = 199/328 (60%), Gaps = 5/328 (1%)
Query: 68 FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
A+KLF ++ RN V MI GYS+ G V +AR F++M +++ WSAMI+ Y +
Sbjct: 1 MAQKLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDK 60
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
L LF EM G+ PDQ+TI +V+S C+ LG L K H ++ KN +
Sbjct: 61 PQEALNLFSEM-QVFGIKPDQVTILSVISACARLGV--LDRAKWIHMYVDKNGLGGALPV 117
Query: 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
L+DMYAKCG L A VFE M+ RNVISWT++I A G + +AL F M+ +
Sbjct: 118 NNALIDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENI 177
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
KPN +TF GVL AC H GLV+EGR+ F + E+++ P+ +HYGCMVDLFG+A L +A
Sbjct: 178 KPNGVTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDAL 237
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM 367
E++ TM L PNV+IWGS +AAC+ H + ++ E KQ L + +P++DG + L ++Y
Sbjct: 238 ELVETMPLAPNVVIWGSLMAACQIHGENELGEFAAKQVLEL-EPDHDGALVQL-SNIYAK 295
Query: 368 NEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ +W+ +R LM + + K RG S I
Sbjct: 296 DRRWQDVGELRNLMKQRGISKERGCSRI 323
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 77/356 (21%), Positives = 146/356 (41%), Gaps = 69/356 (19%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LFS+M + D +IL ++ +C L +H ++ K G + V +L+
Sbjct: 65 LNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDM 124
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNV----ASW 115
Y + G AR +F+++ RN ++W +MI ++ G+ A FF +M N+ ++
Sbjct: 125 YAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTF 184
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
++ A +AG + G + F M + +TP H G
Sbjct: 185 VGVLYACSHAGLVEEGRRTFASMTNEHNITPKH----------EHYGC------------ 222
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSED 234
+VD++ + L+ AL + E M NV+ W +L+ +A + + E+
Sbjct: 223 ---------------MVDLFGRANLLRDALELVETMPLAPNVVIWGSLM--AACQIHGEN 265
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
L F Q ++P+ H G + + + Y + R Q G +
Sbjct: 266 ELGEFAAKQVLELEPD------------HDGALVQ-------LSNIYAKDRRWQDVGELR 306
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVK 350
+L + G +E R+E N ++ F+ A K+HKQ D + + ++ +K
Sbjct: 307 NLMKQRGISKER----GCSRIELNNQVY-EFVMADKKHKQADKIYEKLDEVVKELK 357
>gi|414886077|tpg|DAA62091.1| TPA: methyltransferase small domain protein [Zea mays]
Length = 656
Score = 264 bits (674), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 137/400 (34%), Positives = 230/400 (57%), Gaps = 11/400 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSIL--HILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL 58
M+ + QM + V ++ + +L ++K+C ++ +T LH+ ILK GF +H +V +L+
Sbjct: 261 MKAYVQMVGE-VGANDYEVLLVDLMKACARYSAVTEGQQLHTVILKNGFDAHAFVQATLV 319
Query: 59 HEYVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
H Y G A+ F + + +WN ++ ++G + EAR+ F+ MP R+ SWS
Sbjct: 320 HFYGCCGLIGLAQMTFRLSDKSHTASWNALLAALLRNGLIREARELFDDMPERDTVSWST 379
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MI+ Y+ G D LKLF M+ N + P+++T+ + LS + G+ L GK H +I+
Sbjct: 380 MISGYVQTGRSDMALKLFYSML-NTSIEPNEVTLASALSAIADSGT--LDQGKWIHDYIM 436
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER--NVISWTALICGSAHRGYSEDA 235
+L + +++ L+DMYAKCG + A+ F + ++ +V W A+IC A GY+ +
Sbjct: 437 NRPVQLTDNLSSGLIDMYAKCGSIADAVQFFNRVNDKFSSVSPWNAMICSLAIHGYAHMS 496
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
L LF +Q T +KPN +TF GVL+AC H G V +G+ YF+ + EY ++P I+HYGCMVD
Sbjct: 497 LDLFSQLQRTSIKPNSITFIGVLSACCHAGTVTKGKYYFESMTREYGIQPTIKHYGCMVD 556
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
L G+AG+LEEA +++ M ++P+V+IWGS L+A + + ER ++ ++ + G
Sbjct: 557 LLGRAGYLEEAEQLVSMMPMKPDVVIWGSILSASRAQGNVALGERAAEELAKL--DQTHG 614
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y W VRK + + N+ + G S I
Sbjct: 615 ASKIALSNIYADAGHWINVSVVRKELQDANLERLTGRSGI 654
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 99/404 (24%), Positives = 174/404 (43%), Gaps = 41/404 (10%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+F M ++V + ++ + + + +H L+ V VAT+L+H Y
Sbjct: 131 VFRSMLSENVVPNEATLAGAITAFARCGAPATVGMIHGFALQRALDGFVIVATNLVHAYA 190
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
V AR LFD + RN VTWN M+ GY K+ + A + F R+P R+ SW +I
Sbjct: 191 GVLELCSARALFDGMTYRNTVTWNVMLNGYVKAKMIDMAAEVFWRIPERDEVSWLTLIDG 250
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ A +K + +M+ G ++ + ++ C+ +V G+ H I+KN +
Sbjct: 251 YICADLISDAMKAYVQMVGEVGANDYEVLLVDLMKACARYSAV--TEGQQLHTVILKNGF 308
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFEL------------------------------- 210
+ + + LV Y CG + A M F L
Sbjct: 309 DAHAFVQATLVHFYGCCGLIGLAQMTFRLSDKSHTASWNALLAALLRNGLIREARELFDD 368
Query: 211 MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
M ER+ +SW+ +I G G S+ AL LF M T ++PNE+T L+A +G +D+G
Sbjct: 369 MPERDTVSWSTMISGYVQTGRSDMALKLFYSMLNTSIEPNEVTLASALSAIADSGTLDQG 428
Query: 271 RKYFKMI-DEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE-PNVIIWGSFLAA 328
+ I + L + ++D++ K G + +A + + + +V W + + +
Sbjct: 429 KWIHDYIMNRPVQLTDNLS--SGLIDMYAKCGSIADAVQFFNRVNDKFSSVSPWNAMICS 486
Query: 329 CKEHKQFDMAERVIKQALRM-VKPENDG--GVFTLICDLYTMNE 369
H M+ + Q R +KP + GV + C T+ +
Sbjct: 487 LAIHGYAHMSLDLFSQLQRTSIKPNSITFIGVLSACCHAGTVTK 530
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 89/390 (22%), Positives = 170/390 (43%), Gaps = 51/390 (13%)
Query: 37 HLHSHILKLGFI-SHVYVATSLLHEY--VVTSFGFARKLFDELPE--RNAVTWNTMIKGY 91
LH+ K G + S+V+V S+L Y + +S A +LFDE P R+A N+++
Sbjct: 27 QLHALAAKSGLLASNVFVRNSVLSSYSRLPSSLASALQLFDETPPPLRDATARNSVLAAL 86
Query: 92 SKSGNVCEARDFFERMPL--RNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQM 149
+++G + A+ E MP R+ S++ ++ ++ AG + +FR M+S E + P++
Sbjct: 87 TRAGYLDRAQGLLEEMPRIHRDAVSYTTLVTSFARAGHAARAVAVFRSMLS-ENVVPNEA 145
Query: 150 TIGAVLSG---CSHLGSVGLLMG----KSAHGFIV---------KNEWEL---------- 183
T+ ++ C +VG++ G ++ GF++ EL
Sbjct: 146 TLAGAITAFARCGAPATVGMIHGFALQRALDGFVIVATNLVHAYAGVLELCSARALFDGM 205
Query: 184 ---NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF- 239
N ++++ Y K + A VF + ER+ +SW LI G DA+ +
Sbjct: 206 TYRNTVTWNVMLNGYVKAKMIDMAAEVFWRIPERDEVSWLTLIDGYICADLISDAMKAYV 265
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI-DEEYDLEPRIQHYGCMVDLFG 298
+M+ G E+ ++ AC V EG++ +I +D +Q +V +G
Sbjct: 266 QMVGEVGANDYEVLLVDLMKACARYSAVTEGQQLHTVILKNGFDAHAFVQ--ATLVHFYG 323
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVK--PENDGG 356
G + A R + + + W + LAA + +I++A + PE D
Sbjct: 324 CCGLIGLAQMTFR-LSDKSHTASWNALLAAL-------LRNGLIREARELFDDMPERDTV 375
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNV 386
++ + Y + + A ++ MLN ++
Sbjct: 376 SWSTMISGYVQTGRSDMALKLFYSMLNTSI 405
>gi|356573508|ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
mitochondrial-like [Glycine max]
Length = 629
Score = 264 bits (674), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 134/399 (33%), Positives = 231/399 (57%), Gaps = 9/399 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++ + QM ++++P D +++ L +C+ + ++ +H ++K GF+ H V ++
Sbjct: 98 LRFYLQMRQRALPLDGVALICALGACSKLGDSNLVPQMHVGVVKFGFLRHTKVLNGVMDG 157
Query: 61 YVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
YV G AR++F+E+ E + V+W +++G K V + F+ MP RN +W+ +I
Sbjct: 158 YVKCGLVGEARRVFEEIEEPSVVSWTVVLEGVVKCEGVESGKVVFDEMPERNEVAWTVLI 217
Query: 120 AAYLNAGAYDPGLKLFREMI--SNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
Y+ +G L +EM+ G + +T+ +VLS CS G V + G+ H + V
Sbjct: 218 KGYVGSGFTKEAFLLLKEMVFGCGFGFGLNSITLCSVLSACSQSGDVSV--GRWVHCYAV 275
Query: 178 KN-EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
K W+L + T LVDMYAKCG + ALMVF M RNV++W A++CG A G + +
Sbjct: 276 KAVGWDLGVMVGTSLVDMYAKCGRISAALMVFRHMPRRNVVAWNAMLCGLAMHGMGKVVV 335
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
+F M VKP+ +TF +L++C H+GLV++G +YF ++ Y + P I+HY CMVDL
Sbjct: 336 EMFACM-VEEVKPDAVTFMALLSSCSHSGLVEQGWQYFHDLERAYGIRPEIEHYACMVDL 394
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
G+AG LEEA ++++ + + PN ++ GS L AC H + + E+++++ ++M P N
Sbjct: 395 LGRAGRLEEAEDLVKKLPIPPNEVVLGSLLGACYAHGKLRLGEKIMRELVQM-DPLNT-E 452
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y + K + A +RK++ N+ +RK G S I
Sbjct: 453 YHILLSNMYALCGKADKANSLRKVLKNRGIRKVPGMSSI 491
>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 577
Score = 263 bits (673), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 148/453 (32%), Positives = 234/453 (51%), Gaps = 69/453 (15%)
Query: 7 MHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV---- 62
M R V S IL+SC + H I+K+GF + + T LL Y
Sbjct: 1 MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGD 60
Query: 63 -------------------------VTSFGF---ARKLFDELPERNAVTWNTMIKGYSKS 94
++ G+ AR LFD + ERN+ +WN+MI Y K
Sbjct: 61 LKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYCKL 120
Query: 95 GNVCEARDFFERMPLRNVASWSA--------------------------------MIAAY 122
G++ AR F+ P+++V SW+A MI+AY
Sbjct: 121 GDINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAY 180
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+ G + + +F++M S E + P ++T+ ++LS C+HLG+ L MG+ HG+I +
Sbjct: 181 VQCGEFGTAISMFQQMQS-ENVKPTEVTMVSLLSACAHLGA--LDMGEWIHGYIRTKRLK 237
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
++ + L+DMY KCG L+ A+ VF + +N+ W ++I G G E+A++ F +M
Sbjct: 238 IDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVM 297
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
+ G+KP+ +TF G+L+ C H+GL+ G++YF + Y LEP ++HYGCMVDL G+AG+
Sbjct: 298 EKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGY 357
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362
L+EA E+IR M ++PN ++ GS L AC+ HK + E+V +Q L + DGG + +
Sbjct: 358 LKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLEL--DPCDGGNYVFLS 415
Query: 363 DLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+LY +W+ RKLM+ + V K G S I
Sbjct: 416 NLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSI 448
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 97/263 (36%), Gaps = 70/263 (26%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F QM ++V +++ +L +C H L +G H Y+ T L
Sbjct: 190 ISMFQQMQSENVKPTEVTMVSLLSACAHLG-----------ALDMGEWIHGYIRTKRLKI 238
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
VV N +I Y K G + A D F + +N+ W+++I
Sbjct: 239 DVVLG-------------------NALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIV 279
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
G + + F M EG+ PD +T +LSGCSH GLL + +
Sbjct: 280 GLGMNGRGEEAIAAFIVM-EKEGIKPDGVTFVGILSGCSH---SGLLSAGQRYFSEMLGV 335
Query: 181 WELNEQIA--TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ L + +VD+ + G+LK AL
Sbjct: 336 YGLEPGVEHYGCMVDLLGRAGYLKEAL--------------------------------- 362
Query: 239 FEMMQATGVKPNEMTFTGVLTAC 261
E+++A +KPN M +L AC
Sbjct: 363 -ELIRAMPMKPNSMVLGSLLRAC 384
>gi|293331391|ref|NP_001168246.1| uncharacterized protein LOC100382009 [Zea mays]
gi|223946981|gb|ACN27574.1| unknown [Zea mays]
gi|413932359|gb|AFW66910.1| hypothetical protein ZEAMMB73_426189 [Zea mays]
Length = 499
Score = 263 bits (673), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 140/399 (35%), Positives = 222/399 (55%), Gaps = 39/399 (9%)
Query: 32 LTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS-------------------------- 65
LTV LHS L+LG VYVA + + Y S
Sbjct: 94 LTVTGLLHSLALRLGHARDVYVANAAVSSYFAASDVASADRLFAEVSTDVADVVTWTTMV 153
Query: 66 --------FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
G AR FD + ERN V+WN M+ Y+++G + EARD F+ MP RN A+WS
Sbjct: 154 TGHASAGGLGRARHFFDAMSERNVVSWNAMLSAYARAGMLTEARDLFDAMPTRNAATWSC 213
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MI+ + +G L LF +M+ + G+ P++ + +V+S C+ + S L G H +
Sbjct: 214 MISGLVLSGRCWEALGLFGDMVHSSGIVPNEPALVSVVSACAQMRS--LEHGAWVHAYAE 271
Query: 178 KN-EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
+ + ++ +A+ ++DMY KCG + A+ VF M RN+ SW A+I G A G AL
Sbjct: 272 QELQGAMSVVLASAIIDMYGKCGGIHSAIRVFAAMPMRNIYSWNAMITGLAMNGGERQAL 331
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
SL MQ GV+PN++TF G+L+AC H+GLV+EGR+ F + E++ ++P QHYG MVDL
Sbjct: 332 SLLWKMQMVGVQPNDITFIGLLSACTHSGLVNEGRRLFDSMIEDFGIQPFPQHYGLMVDL 391
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
G++G + EA +++M +EP+ +WG+ +ACK H + ++ E V K+ + + +P + G
Sbjct: 392 IGRSGRVMEALYFVKSMPVEPHPGLWGALASACKMHGKVELGEEVAKKLIEL-EPRH-GS 449
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ +LY +W+ VRK++ + V K G++V+
Sbjct: 450 RYILLSNLYGSVNRWDDMASVRKILKRRKVPKGTGNAVV 488
>gi|449439631|ref|XP_004137589.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 263 bits (673), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 140/410 (34%), Positives = 227/410 (55%), Gaps = 19/410 (4%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF +M V ++ F+ +L +C +H +L G+ S++YV T+L++
Sbjct: 110 IELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSNLYVRTNLINL 169
Query: 61 YVVTSFG------FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVAS 114
Y G A LFDE+P+ N V WN+++ GY + G+ AR F+ MP RNV +
Sbjct: 170 YANGGDGGDFDLKRALYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRT 229
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
W+ M+A + G L LF +M G+ DQ+ + A LS C+ LG L +GK HG
Sbjct: 230 WTIMVAGFAQNGQCKLALSLFDQM-RRAGVELDQVALVAALSACAELGD--LTLGKWIHG 286
Query: 175 FIVKNEWELNE-----QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR 229
+ V+ W + L+ MYA CG + A +FE + +RN +SW+++I G A +
Sbjct: 287 Y-VERTWRSRHLPVLVSLNNALIHMYASCGAMDLAYKLFEEIPQRNTVSWSSIITGFAKQ 345
Query: 230 GYSEDALSLFEMMQATG---VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR 286
G +A+ +F++M +G V+P+E+TF G LTAC H GL+ +G + F+ + + + + P+
Sbjct: 346 GCGVEAIRIFQLMLCSGQNEVRPDEITFIGALTACSHAGLISDGIRLFQSMHKTFGVIPQ 405
Query: 287 IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQAL 346
I+HYGCMVDL +AG L EA +I +M ++PN +WG+ L+ C+ HK ++ V K
Sbjct: 406 IEHYGCMVDLLSRAGLLTEALSLIESMPMKPNNAVWGALLSGCRLHKNDEIVSHVAKHLS 465
Query: 347 RMVKPEND-GGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ P N G F L+ ++Y + +W+ VR+ M + V+K G S I
Sbjct: 466 FEIDPNNQAAGYFMLLANVYAADGRWQDTATVRRNMHDIGVKKPSGRSWI 515
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 83/333 (24%), Positives = 154/333 (46%), Gaps = 15/333 (4%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV- 62
S + R S F I +LKSC F NL H+ I+ GF Y+ LL Y+
Sbjct: 16 ISAIGRSSRVRQQF-IFSVLKSCVSFRNLA---KTHAQIVVSGFSQKNYILNHLLSLYIS 71
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA----SWSAM 118
S G A+K+F+++ + WN +IKG+++S ++ + F+RM L V ++S +
Sbjct: 72 FGSLGSAQKVFEDITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFL 131
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
++A + + + G ++ ++ N G + +++ ++ G G K A ++
Sbjct: 132 LSACVRSRLFREGEQIHGRVLVN-GYWSNLYVRTNLINLYANGGDGGDFDLKRAL-YLFD 189
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ N L+ Y + G A VF+ M ERNV +WT ++ G A G + ALSL
Sbjct: 190 EMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSL 249
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR---KYFKMIDEEYDLEPRIQHYGCMVD 295
F+ M+ GV+ +++ L+AC G + G+ Y + L + ++
Sbjct: 250 FDQMRRAGVELDQVALVAALSACAELGDLTLGKWIHGYVERTWRSRHLPVLVSLNNALIH 309
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
++ G ++ AY++ + + N + W S +
Sbjct: 310 MYASCGAMDLAYKLFEEIP-QRNTVSWSSIITG 341
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 100/229 (43%), Gaps = 23/229 (10%)
Query: 148 QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMV 207
Q I +VL C ++ H IV + + I L+ +Y G L A V
Sbjct: 27 QQFIFSVLKSCVSFRNLA-----KTHAQIVVSGFSQKNYILNHLLSLYISFGSLGSAQKV 81
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
FE + + W +I G S+ ++ LF+ M GV+ N T++ +L+ACV + L
Sbjct: 82 FEDITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLF 141
Query: 268 DEGRK-YFKMIDEEY--DLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRL-----EPNV 319
EG + + +++ Y +L R +++L+ G + +++ R + L + NV
Sbjct: 142 REGEQIHGRVLVNGYWSNLYVRTN----LINLYANGGDGGD-FDLKRALYLFDEMPDSNV 196
Query: 320 IIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+ W S LA FD A +V + PE + +T++ + N
Sbjct: 197 VGWNSLLAGYVRRGDFDGARKVFDEM-----PERNVRTWTIMVAGFAQN 240
>gi|356522492|ref|XP_003529880.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g08510-like [Glycine max]
Length = 474
Score = 263 bits (673), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 137/395 (34%), Positives = 227/395 (57%), Gaps = 6/395 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+SQ+ + + + +CT ++ ++ LH+H +K GF ++ AT+LL Y
Sbjct: 34 LYSQIRLHGFLPNQHTFNFLFSACTSLSSSSLGQMLHTHFIKSGFEPDLFAATALLDMYA 93
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
V + ARKLFDE+P R WN M+ G ++ G++ A + F MP RNV W+ MI+
Sbjct: 94 KVGALELARKLFDEMPVRGVPRWNAMMAGLARFGDMDGALELFXSMPSRNVVPWTTMISG 153
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y YD L LF M +G+ P+ +T+ ++L C++L + L +G+ + KN +
Sbjct: 154 YSWNKQYDKALGLFLGMEQEKGIMPNAVTLVSILPACANLXA--LEIGQRVEAYARKNGF 211
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVF-ELMEERNVISWTALICGSAHRGYSEDALSLFE 240
N + +++MY KCG + A VF E+ RN+ SW +++ G A G AL L++
Sbjct: 212 FKNXYASNAVLEMYVKCGKIDAAWRVFNEIGSLRNLCSWNSMVVGLAVHGECCKALELYD 271
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M G P+++TF G+L AC G+V +GR FK + + P+++HYGCMVDL G+A
Sbjct: 272 QMLGEGTSPDDVTFVGLLLACTQGGMVKKGRHIFKSKTTSFYIIPKLEHYGCMVDLLGRA 331
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G L EAYEVI++M ++P+ +IWG+ L AC H ++AE + ++L +++P N G + +
Sbjct: 332 GQLREAYEVIQSMSMKPDSVIWGALLGACSFHGNVELAE-IAAESLFVLEPWNPGN-YVI 389
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y +W+G ++RK+M + K+ G S I
Sbjct: 390 LSNIYASAGQWDGVAKLRKVMKGSKITKSAGHSFI 424
>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 263 bits (673), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 142/397 (35%), Positives = 236/397 (59%), Gaps = 7/397 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF M + D F++L +L C + +H+ I K S++ + +LL
Sbjct: 149 LELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDM 208
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
YV ARK+FD E++ V+WNT+I GY+K G + A D F ++P R++ SW+++I
Sbjct: 209 YVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLI 268
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y G Y LF M + E + PD++TI ++S + +G+ L G+ HG VK
Sbjct: 269 SGYAQNGDYVTVKCLFTRMFA-ENVKPDKVTIVNLISAVAEMGA--LDQGRWIHGLAVKM 325
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
++ + L+DMY KCG ++ A ++F + E++V +WT +I G A G+ AL LF
Sbjct: 326 LTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELF 385
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+MQA KPN++TF VL AC H+GLVDEG K F + + Y +EP ++HYGC+VDL +
Sbjct: 386 SVMQAE-TKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCR 444
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
+G L +A VI M +EP+ IWG+ L+AC+ H+ ++AER + + L++ +PE +GG +
Sbjct: 445 SGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALMELLKL-EPEKEGG-YI 502
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
L+ ++Y +W ++ +R++M ++ V+K G S ++
Sbjct: 503 LLSNVYATCGRWSYSDSIREVMNSRGVKKIAGCSSVA 539
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 160/365 (43%), Gaps = 76/365 (20%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFIS-HVYVATSLLHEY 61
++ M + D + L++L++ T F + + +H H L G +S Y+ SL+ Y
Sbjct: 52 IYRSMLQNGTYPDRQTFLYLLQT-TKF--VAEVKQIHCHALVFGLLSKEEYLRNSLIKRY 108
Query: 62 VVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
V F AR+LFDE+ +RN V++NTMI G++K GN+
Sbjct: 109 VDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGI-------------------- 148
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
L+LF +M S+ GL PD T+ +L C LG L GKS H I K+
Sbjct: 149 -----------LELFHDMRSH-GLEPDDFTMLGLLLLCGQLGETKL--GKSVHAQIEKSI 194
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFE-LMEE-------------------------- 213
N + L+DMY KC LK A VF+ ME+
Sbjct: 195 GSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFN 254
Query: 214 ----RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
R+++SW +LI G A G LF M A VKP+++T +++A G +D+
Sbjct: 255 QIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQ 314
Query: 270 GRKYFKMIDEEYDLEPRIQHY--GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
GR + + +I+ + ++D++ K G +E A+ VI E +V W + +
Sbjct: 315 GRWIHGL---AVKMLTKIEAFSGSALIDMYCKCGSIERAF-VIFNQIPEKDVTTWTTMIT 370
Query: 328 ACKEH 332
H
Sbjct: 371 GFAFH 375
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 121/284 (42%), Gaps = 16/284 (5%)
Query: 108 PLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL 167
P N+ ++ MI + + + ++R M+ N G PD+ T +L + V +
Sbjct: 28 PYPNLYIFNTMILGF--PFSNEKAFTIYRSMLQN-GTYPDRQTFLYLLQTTKFVAEVKQI 84
Query: 168 MGKS-AHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGS 226
+ G + K E+ N L+ Y G + A +F+ M +RNV+S+ +I G
Sbjct: 85 HCHALVFGLLSKEEYLRNS-----LIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGF 139
Query: 227 AHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR 286
A G L LF M++ G++P++ T G+L C G G+ I++
Sbjct: 140 AKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNL 199
Query: 287 IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQAL 346
I Y ++D++ K L+ A +V +E + + W + +A + + ++A + Q
Sbjct: 200 IL-YNALLDMYVKCNELKLARKVFDG-PMEKDTVSWNTIIAGYAKVGELELACDLFNQI- 256
Query: 347 RMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKAR 390
P D + + Y N + + + M +NV+ +
Sbjct: 257 ----PTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDK 296
>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
Length = 635
Score = 263 bits (673), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 140/394 (35%), Positives = 230/394 (58%), Gaps = 12/394 (3%)
Query: 5 SQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT 64
S+M + + S ++ L +C + L + LH++ KL YVAT+LL Y
Sbjct: 122 SEMLGRGLIPTSHTLSSSLPAC---HGLALGRALHAYAFKLALAGDSYVATALLGMYARG 178
Query: 65 SFG-FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL 123
AR LFDE+P+ + V M+ Y+K G + +AR+ F+ MP ++ W+AMI Y
Sbjct: 179 GDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYT 238
Query: 124 NAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW-- 181
G + L+LFR M+ + G+ PD++ I LS + LG+ G+ H + VKN
Sbjct: 239 QHGRPNEALRLFRWMLRS-GVDPDEVAIILALSAVAQLGTAE--SGRWLHSY-VKNSRRV 294
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+LN ++ T L+DMY KCG L+ A+ VF + +++++ W A+I G A G S AL +F
Sbjct: 295 QLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQ 354
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
+++ G+ P ++TF G+L AC H+GLVDEG ++F+ ++EEY + P+I+HYGCMVDL G+AG
Sbjct: 355 LRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAG 414
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
+EEA+ ++++M + P+ ++W S LAAC+ HK + +++ + + G++ L+
Sbjct: 415 LIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLV--AGGLANSGMYILL 472
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y WE RVR +M ++K G S I
Sbjct: 473 SNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAI 506
>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
Length = 634
Score = 263 bits (673), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 140/394 (35%), Positives = 230/394 (58%), Gaps = 12/394 (3%)
Query: 5 SQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT 64
S+M + + S ++ L +C + L + LH++ KL YVAT+LL Y
Sbjct: 121 SEMLGRGLIPTSHTLSSSLPAC---HGLALGRALHAYAFKLALAGDSYVATALLGMYARG 177
Query: 65 SFG-FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL 123
AR LFDE+P+ + V M+ Y+K G + +AR+ F+ MP ++ W+AMI Y
Sbjct: 178 GDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYT 237
Query: 124 NAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW-- 181
G + L+LFR M+ + G+ PD++ I LS + LG+ G+ H + VKN
Sbjct: 238 QHGRPNEALRLFRWMLRS-GVDPDEVAIILALSAVAQLGTAE--SGRWLHSY-VKNSRRV 293
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+LN ++ T L+DMY KCG L+ A+ VF + +++++ W A+I G A G S AL +F
Sbjct: 294 QLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQ 353
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
+++ G+ P ++TF G+L AC H+GLVDEG ++F+ ++EEY + P+I+HYGCMVDL G+AG
Sbjct: 354 LRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAG 413
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
+EEA+ ++++M + P+ ++W S LAAC+ HK + +++ + + G++ L+
Sbjct: 414 LIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLV--AGGLANSGMYILL 471
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y WE RVR +M ++K G S I
Sbjct: 472 SNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAI 505
>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Brachypodium distachyon]
Length = 554
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 135/383 (35%), Positives = 224/383 (58%), Gaps = 7/383 (1%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLF 73
D F+ +LK+C L + +H H+++ G S+ V SL+ Y ARK+F
Sbjct: 117 DRFTYPFLLKACGGLMALDLGKQVHGHVVRSGCESNAIVQNSLIEMYTRAGDLVLARKVF 176
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
D + ER+ V+WNT+I +++ G + +AR F MP + V SW+A+++ Y AG + ++
Sbjct: 177 DGMQERDVVSWNTVISAHARLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVE 236
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
FR ++ EG PD ++I AVL C+ LG+ L +G+ + + +++ + LV+
Sbjct: 237 AFR-LMQMEGFEPDDVSIVAVLPACAQLGA--LELGRWIYAYCNRHQMLRETYVCNALVE 293
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG-VKPNEM 252
MYAKCG + AL +F M E++VISW+ ++ G A G +++A+ LF M+ G VKPN +
Sbjct: 294 MYAKCGCIDQALQLFNGMAEKDVISWSTMVGGLAAHGRAQEAVQLFTEMERQGTVKPNGI 353
Query: 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312
TF G+L+AC H GL+DEG YF +++ Y +EP ++HYGC+VDL ++G ++ ++I
Sbjct: 354 TFVGLLSACSHAGLLDEGLDYFDRMNDVYGIEPGVEHYGCIVDLLCRSGQIQRTLDLISD 413
Query: 313 MRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWE 372
M L + IWGS L AC+ H D A + + L ++PE D G ++ ++Y +W
Sbjct: 414 MPLPADAKIWGSVLNACRSHGDVDTAV-LAAERLVALEPE-DVGNLVMLANVYAAARRWS 471
Query: 373 GAERVRKLMLNQNVRKARGSSVI 395
RK + ++++RK G S+I
Sbjct: 472 EVANTRKAIRSRSMRKTPGCSLI 494
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 92/372 (24%), Positives = 160/372 (43%), Gaps = 74/372 (19%)
Query: 18 SILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFD 74
+++ L++C F +L +H+H ++L Y+AT ++H + + G A ++F
Sbjct: 15 AVMASLRACASFRDLL---RVHAHAVRLSLSQSSYLATQIVH--LCNAHGRVAHATRVFS 69
Query: 75 ELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKL 134
++ E N N MIK Y+++ +A + RM R W
Sbjct: 70 QVREPNLHLHNAMIKAYAQNHRHLDAITVYIRMLRRRPFPW------------------- 110
Query: 135 FREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDM 194
IS G D+ T +L C G + L +GK HG +V++ E N + L++M
Sbjct: 111 ----ISCTG--GDRFTYPFLLKACG--GLMALDLGKQVHGHVVRSGCESNAIVQNSLIEM 162
Query: 195 YAKCGFLKYALMVFELMEERN-------------------------------VISWTALI 223
Y + G L A VF+ M+ER+ V+SWTAL+
Sbjct: 163 YTRAGDLVLARKVFDGMQERDVVSWNTVISAHARLGQMRKARAVFNSMPDKTVVSWTALV 222
Query: 224 CGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDL 283
G G A+ F +MQ G +P++++ VL AC G ++ GR + + L
Sbjct: 223 SGYTAAGDFSGAVEAFRLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNRHQML 282
Query: 284 EPRIQHYGC--MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERV 341
+ Y C +V+++ K G +++A ++ M E +VI W + + H + A ++
Sbjct: 283 R---ETYVCNALVEMYAKCGCIDQALQLFNGM-AEKDVISWSTMVGGLAAHGRAQEAVQL 338
Query: 342 IKQALRM--VKP 351
+ R VKP
Sbjct: 339 FTEMERQGTVKP 350
>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 614
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 134/382 (35%), Positives = 223/382 (58%), Gaps = 10/382 (2%)
Query: 18 SILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS-FGFARKLFDEL 76
+++ L +C NL + +H +I ++ + + +LL Y AR++FD +
Sbjct: 212 TVVSTLSACAVLRNLELGKEIHDYIASELDLTTI-MGNALLDMYCKCGHVSVAREIFDAM 270
Query: 77 PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFR 136
+N W +M+ GY G + +AR+ FER P R++ W+AMI Y+ ++ + LF
Sbjct: 271 TVKNVNCWTSMVTGYVICGQLDQARNLFERSPSRDIVLWTAMINGYVQFNRFEETIALFG 330
Query: 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA 196
EM G+ PD+ + +L+GC+ G+ L GK H +I +N +++ + T L++MYA
Sbjct: 331 EM-QIRGVKPDKFIVVTLLTGCAQSGA--LEQGKWIHNYIDENRIKVDAVVGTALIEMYA 387
Query: 197 KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTG 256
KCG ++ + +F ++E++ SWT++ICG A G +AL LF+ MQ G+KP+++TF
Sbjct: 388 KCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGKPSEALELFKAMQTCGLKPDDITFVA 447
Query: 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE 316
VL+AC H GLV+EGRK F + Y +EP ++HYGC +DL G+AG L+EA E+++ + +
Sbjct: 448 VLSACSHAGLVEEGRKLFHSMSSMYHIEPNLEHYGCFIDLLGRAGLLQEAEELVKKLPAQ 507
Query: 317 PNVII---WGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEG 373
N II +G+ L+AC+ + DM ER + AL VK +D + TL+ +Y ++WE
Sbjct: 508 NNEIIVPLYGALLSACRTYGNIDMGER-LATALAKVK-SSDSSLHTLLASIYASADRWED 565
Query: 374 AERVRKLMLNQNVRKARGSSVI 395
+VR M + ++K G S I
Sbjct: 566 VRKVRNKMKDLGIKKVPGYSAI 587
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 95/365 (26%), Positives = 163/365 (44%), Gaps = 78/365 (21%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF Q+ V D+++ ++LK + +H+ ++K G YV S +
Sbjct: 93 ISLFQQLREHGVWPDNYTYPYVLKGIGCIGEVREGEKVHAFVVKTGLEFDPYVCNSFMDM 152
Query: 61 YVVTSF--GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y GF ++F+E+P+R+AV+WN MI GY + EA D + RM W+
Sbjct: 153 YAELGLVEGFT-QVFEEMPDRDAVSWNIMISGYVRCKRFEEAVDVYRRM-------WTE- 203
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
SNE P++ T+ + LS C+ L + L +GK H +I
Sbjct: 204 ---------------------SNE--KPNEATVVSTLSACAVLRN--LELGKEIHDYIA- 237
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTAL-----ICGSAHR---- 229
+E +L + L+DMY KCG + A +F+ M +NV WT++ ICG +
Sbjct: 238 SELDLTTIMGNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNL 297
Query: 230 -----------------GYS-----EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
GY E+ ++LF MQ GVKP++ +LT C +G +
Sbjct: 298 FERSPSRDIVLWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGAL 357
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYG----CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWG 323
++G+ IDE RI+ +++++ K G +E+++E+ ++ E + W
Sbjct: 358 EQGKWIHNYIDEN-----RIKVDAVVGTALIEMYAKCGCIEKSFEIFNGLK-EKDTTSWT 411
Query: 324 SFLAA 328
S +
Sbjct: 412 SIICG 416
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/357 (23%), Positives = 154/357 (43%), Gaps = 49/357 (13%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDEL 76
+ +LKSC + L + +HI +G L+ + +S G +A ++F+ +
Sbjct: 12 ISLLKSCKSMSQL---KQIQAHIFCVGLQQDRDTLNKLMAFSMDSSLGDFNYANRIFNYI 68
Query: 77 PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFR 136
+ + +N MIK + KS G++ + LF+
Sbjct: 69 HDPSLFIYNLMIKAFVKS-------------------------------GSFRSAISLFQ 97
Query: 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA 196
++ G+ PD T VL G +G V G+ H F+VK E + + +DMYA
Sbjct: 98 QL-REHGVWPDNYTYPYVLKGIGCIGEV--REGEKVHAFVVKTGLEFDPYVCNSFMDMYA 154
Query: 197 KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM-QATGVKPNEMTFT 255
+ G ++ VFE M +R+ +SW +I G E+A+ ++ M + KPNE T
Sbjct: 155 ELGLVEGFTQVFEEMPDRDAVSWNIMISGYVRCKRFEEAVDVYRRMWTESNEKPNEATVV 214
Query: 256 GVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRL 315
L+AC ++ G++ I E DL + + ++D++ K G + A E+ M +
Sbjct: 215 STLSACAVLRNLELGKEIHDYIASELDLTTIMGN--ALLDMYCKCGHVSVAREIFDAMTV 272
Query: 316 EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWE 372
+ NV W S + Q D A + +++ P D ++T + + Y ++E
Sbjct: 273 K-NVNCWTSMVTGYVICGQLDQARNLFERS-----PSRDIVLWTAMINGYVQFNRFE 323
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 82/194 (42%), Gaps = 4/194 (2%)
Query: 152 GAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELM 211
G +S S+ L AH F V + + + + M + G YA +F +
Sbjct: 9 GTYISLLKSCKSMSQLKQIQAHIFCVGLQQDRDTLNKLMAFSMDSSLGDFNYANRIFNYI 68
Query: 212 EERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR 271
+ ++ + +I G A+SLF+ ++ GV P+ T+ VL G V EG
Sbjct: 69 HDPSLFIYNLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGCIGEVREGE 128
Query: 272 KYFK-MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330
K ++ + +P + + +D++ + G +E +V M + + + W ++
Sbjct: 129 KVHAFVVKTGLEFDPYVCN--SFMDMYAELGLVEGFTQVFEEMP-DRDAVSWNIMISGYV 185
Query: 331 EHKQFDMAERVIKQ 344
K+F+ A V ++
Sbjct: 186 RCKRFEEAVDVYRR 199
>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 142/397 (35%), Positives = 236/397 (59%), Gaps = 7/397 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF M + D F++L +L C + +H+ I K S++ + +LL
Sbjct: 214 LELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDM 273
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
YV ARK+FD E++ V+WNT+I GY+K G + A D F ++P R++ SW+++I
Sbjct: 274 YVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLI 333
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y G Y LF M + E + PD++TI ++S + +G+ L G+ HG VK
Sbjct: 334 SGYAQNGDYVTVKCLFTRMFA-ENVKPDKVTIVNLISAVAEMGA--LDQGRWIHGLAVKM 390
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
++ + L+DMY KCG ++ A ++F + E++V +WT +I G A G+ AL LF
Sbjct: 391 LTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELF 450
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+MQA KPN++TF VL AC H+GLVDEG K F + + Y +EP ++HYGC+VDL +
Sbjct: 451 SVMQAE-TKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCR 509
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
+G L +A VI M +EP+ IWG+ L+AC+ H+ ++AER + + L++ +PE +GG +
Sbjct: 510 SGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALMELLKL-EPEKEGG-YI 567
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
L+ ++Y +W ++ +R++M ++ V+K G S ++
Sbjct: 568 LLSNVYATCGRWSYSDSIREVMNSRGVKKIAGCSSVA 604
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 160/365 (43%), Gaps = 76/365 (20%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFIS-HVYVATSLLHEY 61
++ M + D + L++L++ T F + + +H H L G +S Y+ SL+ Y
Sbjct: 117 IYRSMLQNGTYPDRQTFLYLLQT-TKF--VAEVKQIHCHALVFGLLSKEEYLRNSLIKRY 173
Query: 62 VVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
V F AR+LFDE+ +RN V++NTMI G++K GN+
Sbjct: 174 VDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGI-------------------- 213
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
L+LF +M S+ GL PD T+ +L C LG L GKS H I K+
Sbjct: 214 -----------LELFHDMRSH-GLEPDDFTMLGLLLLCGQLGETKL--GKSVHAQIEKSI 259
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFE-LMEE-------------------------- 213
N + L+DMY KC LK A VF+ ME+
Sbjct: 260 GSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFN 319
Query: 214 ----RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
R+++SW +LI G A G LF M A VKP+++T +++A G +D+
Sbjct: 320 QIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQ 379
Query: 270 GRKYFKMIDEEYDLEPRIQHY--GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
GR + + +I+ + ++D++ K G +E A+ VI E +V W + +
Sbjct: 380 GRWIHGL---AVKMLTKIEAFSGSALIDMYCKCGSIERAF-VIFNQIPEKDVTTWTTMIT 435
Query: 328 ACKEH 332
H
Sbjct: 436 GFAFH 440
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 121/284 (42%), Gaps = 16/284 (5%)
Query: 108 PLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL 167
P N+ ++ MI + + + ++R M+ N G PD+ T +L + V +
Sbjct: 93 PYPNLYIFNTMILGF--PFSNEKAFTIYRSMLQN-GTYPDRQTFLYLLQTTKFVAEVKQI 149
Query: 168 MGKS-AHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGS 226
+ G + K E+ N L+ Y G + A +F+ M +RNV+S+ +I G
Sbjct: 150 HCHALVFGLLSKEEYLRNS-----LIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGF 204
Query: 227 AHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR 286
A G L LF M++ G++P++ T G+L C G G+ I++
Sbjct: 205 AKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNL 264
Query: 287 IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQAL 346
I Y ++D++ K L+ A +V +E + + W + +A + + ++A + Q
Sbjct: 265 IL-YNALLDMYVKCNELKLARKVFDG-PMEKDTVSWNTIIAGYAKVGELELACDLFNQI- 321
Query: 347 RMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKAR 390
P D + + Y N + + + M +NV+ +
Sbjct: 322 ----PTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDK 361
>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Vitis vinifera]
Length = 654
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 137/398 (34%), Positives = 239/398 (60%), Gaps = 9/398 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFI--SHVYVATSLL 58
++ +M + D F++L +L C + + +H+ I + G I S++ + +LL
Sbjct: 213 LKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSVHAWIERRGLIKSSNLILNNALL 272
Query: 59 HEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
YV A+ +F+ + ++ ++WNTMI GY+K GN+ A +FFE MP R++ SW++
Sbjct: 273 DMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPCRDLVSWNS 332
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
+IA Y G +LF M++ E + PD +TI ++S + +G+ L G+ HG++V
Sbjct: 333 IIAGYAQKGDCLMVQRLFENMVA-ENIWPDFVTIINLVSAAAEIGA--LHHGRWIHGWVV 389
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
+ + +++ + + +DMY KCG +K A MVF + E++V WT +I G A GY AL
Sbjct: 390 RMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREVTEKDVTVWTTMITGFAFHGYGSKALQ 449
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LF MQ V PN++TF VLTAC H+G V +G + F + E Y +EP ++HYGC+VDL
Sbjct: 450 LFYEMQEY-VMPNQVTFVAVLTACSHSGFVSQGLRIFNSMKERYGIEPGVEHYGCLVDLL 508
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
G++G E +VI M ++P+ IWG+ L+AC+ + ++AE K+ L++ +PE +GG
Sbjct: 509 GRSGRFSEVKDVIEMMPMKPSRSIWGAVLSACRAYGNIEIAEIAGKELLKL-EPEKEGG- 566
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ ++Y + +W+ ++++R++M ++ V+K G S +
Sbjct: 567 YVLLSNIYATSGRWKHSDKIREIMESRGVKKTAGCSSV 604
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 85/358 (23%), Positives = 143/358 (39%), Gaps = 74/358 (20%)
Query: 32 LTVIHHLHSHILKLGFISHVYVATSLLHEYVVT-SFGFARKLFDELPERNAVTWNTMIKG 90
L+ + +H H + G + Y+ +L+ Y+ G A ++F ++ +AV++N MI G
Sbjct: 143 LSQVMQIHCHAIITGSFYYGYLQNTLMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMIFG 202
Query: 91 YSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMT 150
Y+K G+ EA LK EM+ GL PD+ T
Sbjct: 203 YAKKGHNIEA-------------------------------LKFLHEMV-GLGLKPDEFT 230
Query: 151 IGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW--ELNEQIATILVDMYAKC---------- 198
+ +L C LG L GKS H +I + N + L+DMY KC
Sbjct: 231 MLGLLICCGRLGDAQL--GKSVHAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQSIF 288
Query: 199 ---------------------GFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
G L+ A FE M R+++SW ++I G A +G
Sbjct: 289 NVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPCRDLVSWNSIIAGYAQKGDCLMVQR 348
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHY--GCMVD 295
LFE M A + P+ +T +++A G + GR + ++ +I + +D
Sbjct: 349 LFENMVAENIWPDFVTIINLVSAAAEIGALHHGRWIHGWV---VRMQMKIDAFLGSAFID 405
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353
++ K G ++ A V R + E +V +W + + H A ++ + V P
Sbjct: 406 MYWKCGSIKRACMVFREVT-EKDVTVWTTMITGFAFHGYGSKALQLFYEMQEYVMPNQ 462
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 91/222 (40%), Gaps = 14/222 (6%)
Query: 130 PGLKLFREMISNEGLTPDQ--MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
P L ++ MIS L+ +Q ++LS C + L A F+ + I
Sbjct: 95 PNLYIYNTMISALSLSLNQSFAFYNSLLSSCIYPNRSTFLFLLQASKFLSQVMQIHCHAI 154
Query: 188 AT----------ILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
T L+ +Y + + A VF+ M + +S+ +I G A +G++ +AL
Sbjct: 155 ITGSFYYGYLQNTLMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMIFGYAKKGHNIEALK 214
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLE-PRIQHYGCMVDL 296
M G+KP+E T G+L C G G+ I+ ++ + ++D+
Sbjct: 215 FLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSVHAWIERRGLIKSSNLILNNALLDM 274
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
+ K L A + + + + I W + +A + ++A
Sbjct: 275 YVKCKELRIAQSIFNVI-VRKDTISWNTMIAGYAKVGNLEIA 315
>gi|357469567|ref|XP_003605068.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506123|gb|AES87265.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 494
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 143/393 (36%), Positives = 234/393 (59%), Gaps = 13/393 (3%)
Query: 10 QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGF- 68
S+ DSF++ + +C + + HLH + K+GF +HV+V T LLH Y +++GF
Sbjct: 108 HSLSLDSFTLTFLAHACANLDTTHFGFHLHCIVCKMGFENHVFVQTGLLHMY--SNWGFL 165
Query: 69 --ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAG 126
A ++F E+P+RN VTWN I G K G + AR F+RM +R+V SW+ +I Y
Sbjct: 166 VDAAQVFGEMPDRNTVTWNVFISGLIKWGQLEFARSVFDRMVVRSVVSWTLVIDGYTRMN 225
Query: 127 AYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE-LNE 185
L LFR+MI +G+ P+++T+ V +HLG+V M +S HG++ K + ++
Sbjct: 226 KPLKALALFRKMIEVDGIEPNEVTLLTVFPAIAHLGNVK--MCESVHGYVEKRGFNAVDI 283
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEE--RNVISWTALICGSAHRGYSEDALSLFEMMQ 243
+I L+D+YAKCG ++ A +F M + RN +SW +++ G A G +A+ FE M+
Sbjct: 284 RIVNALIDLYAKCGCIESASGLFSEMPDWRRNSVSWNSVMSGYATFGMVREAVDTFEKME 343
Query: 244 ATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFL 303
GV+PN + F +L+AC H+GLV+EG ++F + +Y L P I+HYGC++D+ G+AG L
Sbjct: 344 KAGVRPNHVAFLSILSACSHSGLVEEGLEFFGKMVNDYGLVPDIKHYGCVIDMLGRAGRL 403
Query: 304 EEAYEVIRTMRLE-PNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362
EA +V + E N +IW + L AC H ++ +RV K+ L M K GG + L+
Sbjct: 404 GEAEKVALEVPHEAANDVIWRTLLGACSVHDNVEIGKRVTKKILEMEK--GHGGDYVLMS 461
Query: 363 DLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+++ +++ ER+R+++ +NV K G S++
Sbjct: 462 NIFASVGRFKDVERLREMIDKRNVFKLPGYSIV 494
>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 719
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 149/456 (32%), Positives = 237/456 (51%), Gaps = 70/456 (15%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV 63
+ QM R+ V + ++ ++K C ++ +H+ ILK GF ++V SL+H Y V
Sbjct: 147 YEQMVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSV 206
Query: 64 TS--------------------------------FGFARKLFDELPERNAVTWNTMIKGY 91
G AR+LF+E+PER+ +WN+MI GY
Sbjct: 207 CGRIGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGY 266
Query: 92 SKSGNVCEARDFFERMPLR-------------------------------NVASWSAMIA 120
+G++ A D F +MP R NV SW+ M+A
Sbjct: 267 VGNGDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLA 326
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y+ YD L++F +M+ P++ T+ +VL+ C+HLG L GK H +I N
Sbjct: 327 LYVRIKDYDECLRMFDKMMGET--MPNEATLVSVLTACAHLGR--LDRGKWIHSYIKNNR 382
Query: 181 -WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
E + ++T L+ MYAKCG + A VF+ M R+V+SW ++I G G ++ AL +F
Sbjct: 383 VIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMF 442
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M+ G PN+ TF VL+AC H+G++ EG YF ++ Y +EP+++HYGCMVDL G+
Sbjct: 443 LDMEKRGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGR 502
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG +++ E+IR M +E +WG+ L+AC+ H ++AE V K+ + + +P D G +
Sbjct: 503 AGLMKDLEELIRKMPMEGGTALWGALLSACRTHSNSELAEIVAKRLIEL-EPR-DIGPYL 560
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y KW+ E VRK+M + + K G S +
Sbjct: 561 LLSNIYAAEGKWDDVEIVRKMMKERGLTKTTGFSWV 596
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 71/338 (21%), Positives = 129/338 (38%), Gaps = 47/338 (13%)
Query: 16 SFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV--VTSFGFARKLF 73
S IL L+SC + + +H+ ++ G + A + S A LF
Sbjct: 58 SHPILRTLESCC--GSTKEFNQIHTQLIVSGLLQQPLAAGRAVKTLCSFPDSVQHAVSLF 115
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
+ L E +A NT+++ Y+N L
Sbjct: 116 EGLEEPDAFICNTIMR-------------------------------TYVNVNDPYTALG 144
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
+ E + + + P+ T ++ C +GS+G G+ H I+K +EL+ + L+
Sbjct: 145 FYYEQMVRKCVAPNHYTFPLLVKVCWEIGSIG--DGEKIHARILKFGFELDLFVRNSLIH 202
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
MY+ CG + A +FE+ ++++W ++I G G A LFE M + +
Sbjct: 203 MYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDL----FS 258
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
+ ++ V G + F + I + CM+D + + +E A E+ M
Sbjct: 259 WNSMIAGYVGNGDMTAAEDLFNKMPFR-----DIVSWNCMIDGYAQVQNMEIACELFNWM 313
Query: 314 RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351
NV+ W LA K +D R+ + + P
Sbjct: 314 PYR-NVVSWNIMLALYVRIKDYDECLRMFDKMMGETMP 350
>gi|224126329|ref|XP_002329527.1| predicted protein [Populus trichocarpa]
gi|222870236|gb|EEF07367.1| predicted protein [Populus trichocarpa]
Length = 377
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 128/330 (38%), Positives = 207/330 (62%), Gaps = 8/330 (2%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
ARK+FDE+P +N + W +M+ GY G + +AR+ FER P+++V W+AMI Y+ +
Sbjct: 11 ARKIFDEMPHKNVICWTSMVSGYVNYGELDKARELFERSPVKDVVLWTAMINGYVQFNHF 70
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
D + LF+EM + + PD+ + A+L+GC+ +G+ L G HG+I + ++ +
Sbjct: 71 DEAVALFQEM-QIQRVKPDKFVLVALLTGCAQMGA--LEQGTWIHGYIDEKGIPVDAVVG 127
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
T L++MY+KCG ++ AL +F + E++ +WT++ICG A G + AL LF M+
Sbjct: 128 TSLIEMYSKCGCIEKALRIFCGLREKDTATWTSIICGLAMNGKTSKALELFSKMKQVEAI 187
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+E+TF GVL+AC H GLV+EGR++F + Y++EP+++HYGC++DL G+AG L+EA E
Sbjct: 188 PDEVTFIGVLSACSHGGLVEEGREFFNSMTSIYNIEPKLEHYGCLIDLLGRAGQLDEAEE 247
Query: 309 VIRTMRLEPNVII---WGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365
+I+ + N II +GS L+AC+ +K M ERV +Q +++ D V TL+ ++Y
Sbjct: 248 LIKKIVNANNEIIVPLYGSLLSACRIYKNVQMGERVAEQLVKI--ESRDSSVHTLLANIY 305
Query: 366 TMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+W RVR+ M + V+K G S I
Sbjct: 306 ASAGRWVDVNRVRREMKDLGVKKVPGCSSI 335
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 35/167 (20%)
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRG----------------------- 230
MY KCG L A +F+ M +NVI WT+++ G + G
Sbjct: 1 MYCKCGCLSVARKIFDEMPHKNVICWTSMVSGYVNYGELDKARELFERSPVKDVVLWTAM 60
Query: 231 --------YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD 282
+ ++A++LF+ MQ VKP++ +LT C G +++G IDE+
Sbjct: 61 INGYVQFNHFDEAVALFQEMQIQRVKPDKFVLVALLTGCAQMGALEQGTWIHGYIDEKGI 120
Query: 283 LEPRIQHYGC-MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
P G +++++ K G +E+A + +R E + W S +
Sbjct: 121 --PVDAVVGTSLIEMYSKCGCIEKALRIFCGLR-EKDTATWTSIICG 164
>gi|414886078|tpg|DAA62092.1| TPA: hypothetical protein ZEAMMB73_488923 [Zea mays]
Length = 714
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 137/400 (34%), Positives = 230/400 (57%), Gaps = 11/400 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSIL--HILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL 58
M+ + QM + V ++ + +L ++K+C ++ +T LH+ ILK GF +H +V +L+
Sbjct: 261 MKAYVQMVGE-VGANDYEVLLVDLMKACARYSAVTEGQQLHTVILKNGFDAHAFVQATLV 319
Query: 59 HEYVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
H Y G A+ F + + +WN ++ ++G + EAR+ F+ MP R+ SWS
Sbjct: 320 HFYGCCGLIGLAQMTFRLSDKSHTASWNALLAALLRNGLIREARELFDDMPERDTVSWST 379
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MI+ Y+ G D LKLF M+ N + P+++T+ + LS + G+ L GK H +I+
Sbjct: 380 MISGYVQTGRSDMALKLFYSML-NTSIEPNEVTLASALSAIADSGT--LDQGKWIHDYIM 436
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER--NVISWTALICGSAHRGYSEDA 235
+L + +++ L+DMYAKCG + A+ F + ++ +V W A+IC A GY+ +
Sbjct: 437 NRPVQLTDNLSSGLIDMYAKCGSIADAVQFFNRVNDKFSSVSPWNAMICSLAIHGYAHMS 496
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
L LF +Q T +KPN +TF GVL+AC H G V +G+ YF+ + EY ++P I+HYGCMVD
Sbjct: 497 LDLFSQLQRTSIKPNSITFIGVLSACCHAGTVTKGKYYFESMTREYGIQPTIKHYGCMVD 556
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
L G+AG+LEEA +++ M ++P+V+IWGS L+A + + ER ++ ++ + G
Sbjct: 557 LLGRAGYLEEAEQLVSMMPMKPDVVIWGSILSASRAQGNVALGERAAEELAKL--DQTHG 614
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y W VRK + + N+ + G S I
Sbjct: 615 ASKIALSNIYADAGHWINVSVVRKELQDANLERLTGRSGI 654
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 99/404 (24%), Positives = 174/404 (43%), Gaps = 41/404 (10%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+F M ++V + ++ + + + +H L+ V VAT+L+H Y
Sbjct: 131 VFRSMLSENVVPNEATLAGAITAFARCGAPATVGMIHGFALQRALDGFVIVATNLVHAYA 190
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
V AR LFD + RN VTWN M+ GY K+ + A + F R+P R+ SW +I
Sbjct: 191 GVLELCSARALFDGMTYRNTVTWNVMLNGYVKAKMIDMAAEVFWRIPERDEVSWLTLIDG 250
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ A +K + +M+ G ++ + ++ C+ +V G+ H I+KN +
Sbjct: 251 YICADLISDAMKAYVQMVGEVGANDYEVLLVDLMKACARYSAV--TEGQQLHTVILKNGF 308
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFEL------------------------------- 210
+ + + LV Y CG + A M F L
Sbjct: 309 DAHAFVQATLVHFYGCCGLIGLAQMTFRLSDKSHTASWNALLAALLRNGLIREARELFDD 368
Query: 211 MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
M ER+ +SW+ +I G G S+ AL LF M T ++PNE+T L+A +G +D+G
Sbjct: 369 MPERDTVSWSTMISGYVQTGRSDMALKLFYSMLNTSIEPNEVTLASALSAIADSGTLDQG 428
Query: 271 RKYFKMI-DEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE-PNVIIWGSFLAA 328
+ I + L + ++D++ K G + +A + + + +V W + + +
Sbjct: 429 KWIHDYIMNRPVQLTDNLS--SGLIDMYAKCGSIADAVQFFNRVNDKFSSVSPWNAMICS 486
Query: 329 CKEHKQFDMAERVIKQALRM-VKPENDG--GVFTLICDLYTMNE 369
H M+ + Q R +KP + GV + C T+ +
Sbjct: 487 LAIHGYAHMSLDLFSQLQRTSIKPNSITFIGVLSACCHAGTVTK 530
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 89/390 (22%), Positives = 170/390 (43%), Gaps = 51/390 (13%)
Query: 37 HLHSHILKLGFI-SHVYVATSLLHEY--VVTSFGFARKLFDELPE--RNAVTWNTMIKGY 91
LH+ K G + S+V+V S+L Y + +S A +LFDE P R+A N+++
Sbjct: 27 QLHALAAKSGLLASNVFVRNSVLSSYSRLPSSLASALQLFDETPPPLRDATARNSVLAAL 86
Query: 92 SKSGNVCEARDFFERMPL--RNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQM 149
+++G + A+ E MP R+ S++ ++ ++ AG + +FR M+S E + P++
Sbjct: 87 TRAGYLDRAQGLLEEMPRIHRDAVSYTTLVTSFARAGHAARAVAVFRSMLS-ENVVPNEA 145
Query: 150 TIGAVLSG---CSHLGSVGLLMG----KSAHGFIV---------KNEWEL---------- 183
T+ ++ C +VG++ G ++ GF++ EL
Sbjct: 146 TLAGAITAFARCGAPATVGMIHGFALQRALDGFVIVATNLVHAYAGVLELCSARALFDGM 205
Query: 184 ---NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF- 239
N ++++ Y K + A VF + ER+ +SW LI G DA+ +
Sbjct: 206 TYRNTVTWNVMLNGYVKAKMIDMAAEVFWRIPERDEVSWLTLIDGYICADLISDAMKAYV 265
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI-DEEYDLEPRIQHYGCMVDLFG 298
+M+ G E+ ++ AC V EG++ +I +D +Q +V +G
Sbjct: 266 QMVGEVGANDYEVLLVDLMKACARYSAVTEGQQLHTVILKNGFDAHAFVQ--ATLVHFYG 323
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVK--PENDGG 356
G + A R + + + W + LAA + +I++A + PE D
Sbjct: 324 CCGLIGLAQMTFR-LSDKSHTASWNALLAAL-------LRNGLIREARELFDDMPERDTV 375
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNV 386
++ + Y + + A ++ MLN ++
Sbjct: 376 SWSTMISGYVQTGRSDMALKLFYSMLNTSI 405
>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
Length = 601
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 138/353 (39%), Positives = 210/353 (59%), Gaps = 10/353 (2%)
Query: 48 ISHVYVATSLLHEYVVTSFGFARKLFDELPERNAVTWNT-----MIKGYSKSGNVCEARD 102
+ V + + L ++ F R + E V W+ ++ YSK G +A
Sbjct: 202 VDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVK 261
Query: 103 FFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLG 162
F MP RN+ SW A+IA Y+ Y LK+F+EMI EG+ P+Q T+ + L+ C+ LG
Sbjct: 262 VFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMII-EGIEPNQSTVTSALTACAQLG 320
Query: 163 SVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTAL 222
S L G+ H ++ +++ LN ++ T LVDMY+KCG + AL+VFE + ++V WTA+
Sbjct: 321 S--LDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAM 378
Query: 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD 282
I G A RG + +L+LF M + V+PN +TF GVL+AC H GLVDEG + F+++ +Y
Sbjct: 379 INGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYR 438
Query: 283 LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVI 342
LEP + HYGCMVDL G+AG LEEA + I +M +EP +WG+ + C HK F++ E +
Sbjct: 439 LEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIHKAFELGEHIG 498
Query: 343 KQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+++ +P + G + L+ +LY+ +KWE A VR+LM + V K+ G S I
Sbjct: 499 NHLIKL-QPHHSGR-YILLANLYSRCQKWEAAANVRRLMKGKGVDKSPGCSWI 549
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 78/329 (23%), Positives = 137/329 (41%), Gaps = 40/329 (12%)
Query: 18 SILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELP 77
SIL C F++L S ++ G H + + +L G+ LFD L
Sbjct: 10 SILCCFHKCGTFDHLK---QTTSILITSGLAHHTFFLSDILRS-ATKDLGYTLLLFDRLA 65
Query: 78 ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
WNT+I+G+S S ++ AY
Sbjct: 66 TPYIFLWNTIIRGFSASSQP------------------QMVLVAY--------------S 93
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
+ N G+ PD+ T +L S L + + IVK + + + LV +A
Sbjct: 94 RLRNHGVIPDRHTFPLLLKAFSKLRNENPF---QFYAHIVKFGLDFDAFVQNSLVSAFAH 150
Query: 198 CGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGV 257
CG++ + +F +++V+SWTALI G G + +AL F M+++GV+ +E+T V
Sbjct: 151 CGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTIVSV 210
Query: 258 LTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEP 317
L A V GR E + + +VD++ K G+ ++A +V M
Sbjct: 211 LCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTR- 269
Query: 318 NVIIWGSFLAACKEHKQFDMAERVIKQAL 346
N++ WG+ +A + ++ A +V ++ +
Sbjct: 270 NLVSWGALIAGYVQCNRYKEALKVFQEMI 298
>gi|357150678|ref|XP_003575540.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 491
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 138/363 (38%), Positives = 209/363 (57%), Gaps = 9/363 (2%)
Query: 37 HLHSHILKLGF---ISHVYVATSLLHEYVV-TSFGFARKLFDELPERNAVTWNTMIKGYS 92
+H+ ++K G +S VY +TSL Y ARK+FD +PE V+WN ++ G+
Sbjct: 86 QIHTLLVKSGLPRSVSGVYASTSLARVYARHGRLADARKVFDGMPETTVVSWNVLLDGFV 145
Query: 93 KSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIG 152
++G++ A + F M RNV SW+ ++ + G ++LF EM + GL PD+ T+
Sbjct: 146 RAGDLDAAWELFVEMTERNVVSWNTVMVGFARLGRAQEAVELFVEMTTVYGLVPDEATMV 205
Query: 153 AVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME 212
+S ++G +GL G+SAHG++++ E+ L+ + L++MY +CG + A + F +
Sbjct: 206 GFVSAVRNIGLLGL--GRSAHGYVIRREFSLDGALGVGLINMYTRCGSMTAAYLCFSSVT 263
Query: 213 ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK 272
+NV WT+ I G A G+ + AL LF M+ G++PN++TF VL AC H GLVDEG K
Sbjct: 264 SKNVEHWTSAIGGFAAHGHPDMALRLFAEMRELGIEPNDVTFVAVLNACSHGGLVDEGFK 323
Query: 273 YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
YF M+ + + P IQHYGC+VDL G+AGFLEEA+ + ++ +P + W S LAAC+ H
Sbjct: 324 YFNMM-RKMGIRPSIQHYGCLVDLLGRAGFLEEAFNLASSLPKDPGFVTWSSLLAACQTH 382
Query: 333 KQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGS 392
DMAE V Q L +P N G + L+ + Y +WE +R R M K G
Sbjct: 383 GNVDMAE-VAAQKLADAEP-NHGSSYVLLSNAYARAGQWEDLKRTRSRMEAHRAVKKPGL 440
Query: 393 SVI 395
S I
Sbjct: 441 SWI 443
>gi|218192167|gb|EEC74594.1| hypothetical protein OsI_10176 [Oryza sativa Indica Group]
Length = 523
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 141/412 (34%), Positives = 232/412 (56%), Gaps = 41/412 (9%)
Query: 12 VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL------------- 58
V D + +L++CT +H+H++K G S +V +L+
Sbjct: 78 VRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAA 137
Query: 59 -------HEYVVT------------SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCE 99
E V G AR LFDE P ++ V+WN MI Y+K G++
Sbjct: 138 ALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMAL 197
Query: 100 ARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCS 159
AR+ F+++P R+V SW+ MI+ Y+ G++ L+LF +M G PD +T+ ++LS C+
Sbjct: 198 ARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQM-QRMGEKPDIVTMLSLLSACA 256
Query: 160 HLGS--VGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVI 217
G VG + S +N + + + L+DMYAKCG +K A VF M +++V
Sbjct: 257 DSGDLDVGQRLHSSLSDMFSRNGFPV--VLGNALIDMYAKCGSMKSAHEVFWSMRDKDVS 314
Query: 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI 277
+W +++ G A G+ +++ +FE M V+P+E+TF VL AC H G+VD+GR++F ++
Sbjct: 315 TWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLM 374
Query: 278 DEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDM 337
+Y +EP I+HYGC+VD+ G+AG L+EA+E I TM+ EPN +IW + L+AC+ H + ++
Sbjct: 375 QHKYRVEPNIKHYGCIVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGEIEL 434
Query: 338 AERVIKQALRMVKPEND-GGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRK 388
A+ +Q ++K ND G + L+ ++Y +W G+E++RKLM + V K
Sbjct: 435 AKHANRQ---LLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMDDSGVNK 483
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/352 (23%), Positives = 159/352 (45%), Gaps = 61/352 (17%)
Query: 40 SHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCE 99
S + +L F S V V ++ H Y+V FD++P + +NT+I+G + + +
Sbjct: 11 SELRELLFASAVAVRGAIAHAYLV---------FDQIPRPDRFMYNTLIRGAAHTAAPRD 61
Query: 100 ARDFFERMPLR--------NVASWSAMIAAYLNAGAYDPGLKLFREMI------------ 139
A + RM R + ++ ++ A GA D G+++ ++
Sbjct: 62 AVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKN 121
Query: 140 ---------SNEGLTP---------DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
N G+ D + A+++GC+ G +G +A +E
Sbjct: 122 ALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIG-----AARDLF--DEC 174
Query: 182 ELNEQIA-TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ + ++ +++ YAK G + A +F+ + ER+V+SW +I G G AL LFE
Sbjct: 175 PVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFE 234
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG-CMVDLFGK 299
MQ G KP+ +T +L+AC +G +D G++ + + + G ++D++ K
Sbjct: 235 QMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAK 294
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH----KQFDMAERVIKQALR 347
G ++ A+EV +MR + +V W S + H + DM E+++K +R
Sbjct: 295 CGSMKSAHEVFWSMR-DKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVR 345
>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 141/398 (35%), Positives = 231/398 (58%), Gaps = 12/398 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L S M + + + ++ L +C L++ LH++ KL YVAT+LL
Sbjct: 107 LALLSDMLSEGLLPTAHTLSASLPAC---RGLSLGRALHAYAFKLALSGDSYVATALLSM 163
Query: 61 YVVTSFGFARK-LFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A + LFDE+P+ + V+ M+ Y+ G + +AR F+ +P ++ W+AMI
Sbjct: 164 YARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMI 223
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y G + L+LFR M+ + PD++T+ VLS + LG+V GK H + VKN
Sbjct: 224 DGYTQHGKPNEALQLFRRMLRSSA-EPDEVTVVLVLSAVAQLGTVE--SGKWLHSY-VKN 279
Query: 180 EW--ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
+LN ++AT LVDMY KCG L+ A+ VF + ++++ W A+I G A G S AL
Sbjct: 280 SRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALE 339
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
+F ++ G+ P ++TF G+L AC H+GLV+EGR +F+ ++ EY ++P+I+HYGCMVDL
Sbjct: 340 MFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYGCMVDLL 399
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
G+AG +EEA+ +++++ + P+ ++W S LAAC+ HK + +R+ + + G+
Sbjct: 400 GRAGLIEEAFHLVQSLTITPDAVMWVSLLAACRLHKNMALGQRIAD--FLVANGLANSGM 457
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ ++Y KWE RVR +M ++K G S I
Sbjct: 458 YILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAI 495
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 115/269 (42%), Gaps = 38/269 (14%)
Query: 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ 148
+ Y+ SG + + R +++ I A+ + G + PGL L +M+S EGL P
Sbjct: 64 RAYAASGRLDHSLTLLGRTKDPTTIFYTSAIHAHSSRGLHLPGLALLSDMLS-EGLLPTA 122
Query: 149 MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDM-------------- 194
T+ A L C GL +G++ H + K + +AT L+ M
Sbjct: 123 HTLSASLPACR-----GLSLGRALHAYAFKLALSGDSYVATALLSMYARAGDAAAARALF 177
Query: 195 -----------------YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
YA G L A +F+ + ++ I W A+I G G +AL
Sbjct: 178 DEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQ 237
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LF M + +P+E+T VL+A G V+ G+ + ++ ++ +VD++
Sbjct: 238 LFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMY 297
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
K G LE+A V + ++++W + +
Sbjct: 298 CKCGSLEDAVAVFHGIG-NKDIVVWNAMI 325
>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
Length = 596
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 141/401 (35%), Positives = 230/401 (57%), Gaps = 46/401 (11%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFIS-HVYVATSLLH 59
M F +M + V ++ +++ +LK+ ++ +H L+ G + V++ +SL+
Sbjct: 189 MVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVD 248
Query: 60 EY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y + + A+K+FDE MP RNV +W+A+
Sbjct: 249 MYGKCSCYDDAQKVFDE-------------------------------MPSRNVVTWTAL 277
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
IA Y+ + +D G+ +F EM+ ++ + P++ T+ +VLS C+H+G+ L G+ H +++K
Sbjct: 278 IAGYVQSRCFDKGMLVFEEMLKSD-VAPNEKTLSSVLSACAHVGA--LHRGRRVHCYMIK 334
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
N E+N T L+D+Y KCG L+ A++VFE + E+NV +WTA+I G A GY+ DA L
Sbjct: 335 NSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDL 394
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F M ++ V PNE+TF VL+AC H GLV+EGR+ F + +++E + HY CMVDLFG
Sbjct: 395 FYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMELKADHYACMVDLFG 454
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDM----AERVIKQALRMVKPEND 354
+ G LEEA +I M +EP ++WG+ +C HK +++ A RVIK ++P +
Sbjct: 455 RKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIK-----LQPSHS 509
Query: 355 GGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G +TL+ +LY+ ++ W+ RVRK M +Q V K+ G S I
Sbjct: 510 GR-YTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWI 549
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 124/250 (49%), Gaps = 8/250 (3%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
N++I GYS SG A F+ ++V +W+AMI ++ G+ + F EM G+
Sbjct: 142 NSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEM-KKTGV 200
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHG-FIVKNEWELNEQIATILVDMYAKCGFLKY 203
++MT+ +VL + V G+S HG ++ + + I + LVDMY KC
Sbjct: 201 AANEMTVVSVLKAAGKVEDVRF--GRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDD 258
Query: 204 ALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263
A VF+ M RNV++WTALI G + + +FE M + V PNE T + VL+AC H
Sbjct: 259 AQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAH 318
Query: 264 TGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
G + GR+ + MI +E ++DL+ K G LEEA V + E NV W
Sbjct: 319 VGALHRGRRVHCYMIKNS--IEINTTAGTTLIDLYVKCGCLEEAILVFERLH-EKNVYTW 375
Query: 323 GSFLAACKEH 332
+ + H
Sbjct: 376 TAMINGFAAH 385
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 110/250 (44%), Gaps = 7/250 (2%)
Query: 100 ARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKL--FREMISNEGLTPDQMTIGAVLSG 157
AR ++ ++ W ++I + + L +R M N G+ P + T +L
Sbjct: 55 ARRLLCQLQTLSIQLWDSLIGHFSGGITLNRRLSFLAYRHMRRN-GVIPSRHTFPPLLKA 113
Query: 158 CSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVI 217
L H IVK + + + L+ Y+ G +A +F+ E+++V+
Sbjct: 114 VFKLRDSNPF---QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVV 170
Query: 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI 277
+WTA+I G G + +A+ F M+ TGV NEMT VL A V GR +
Sbjct: 171 TWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLY 230
Query: 278 DEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDM 337
E ++ + +VD++GK ++A +V M NV+ W + +A + + FD
Sbjct: 231 LETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMP-SRNVVTWTALIAGYVQSRCFDK 289
Query: 338 AERVIKQALR 347
V ++ L+
Sbjct: 290 GMLVFEEMLK 299
>gi|297806919|ref|XP_002871343.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317180|gb|EFH47602.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 511
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 128/358 (35%), Positives = 218/358 (60%), Gaps = 6/358 (1%)
Query: 38 LHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGN 96
LHS + GF S + T+L+ Y + + AR++FDE+ R+ WN MI GY + G+
Sbjct: 104 LHSQFFRSGFESDSFCCTALITAYAKLGALCCARRVFDEMSNRDVPVWNAMITGYQRRGD 163
Query: 97 VCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLS 156
+ A + F+ MP +NV SW+ +I+ + G Y L +F M ++ + P+ +T+ +VL
Sbjct: 164 MKAAMELFDSMPNKNVTSWTTVISGFSQNGNYSEALTMFLCMEKDKSVKPNHITLVSVLP 223
Query: 157 GCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVF-ELMEERN 215
C++LG L +G+ G+ +N + N + ++MY+KCG + A +F E+ +RN
Sbjct: 224 ACANLGE--LEIGRRLEGYARENGFFDNIYVRNATLEMYSKCGMIDVAKRLFDEIGNQRN 281
Query: 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275
+ISW ++I A G ++AL L+ M G +P+ +TF G+L ACVH G+V +G++ K
Sbjct: 282 LISWNSMIGSLATHGKHDEALELYAQMLQEGERPDAVTFVGLLLACVHGGMVLKGKELLK 341
Query: 276 MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQF 335
++E + + P+++HYGCM+DL G+ G L+EA ++I+TM ++P+ ++WG+ L AC H
Sbjct: 342 SMEEVHKISPKLEHYGCMIDLLGRVGKLQEACDLIKTMPMKPDAVVWGTLLGACSFHGNV 401
Query: 336 DMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
++AE + +AL ++P N G ++ ++Y NEKW+G R+RKLM + + KA G S
Sbjct: 402 EIAE-IASEALMKLEPTNPGNC-VIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYS 457
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 101/234 (43%), Gaps = 46/234 (19%)
Query: 10 QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS-FGF 68
+SV + +++ +L +C + L + L + + GF ++YV + L Y
Sbjct: 209 KSVKPNHITLVSVLPACANLGELEIGRRLEGYARENGFFDNIYVRNATLEMYSKCGMIDV 268
Query: 69 ARKLFDEL-PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
A++LFDE+ +RN ++WN+ MI + G
Sbjct: 269 AKRLFDEIGNQRNLISWNS-------------------------------MIGSLATHGK 297
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
+D L+L+ +M+ EG PD +T +L C H G V L GK ++K+ E+++
Sbjct: 298 HDEALELYAQMLQ-EGERPDAVTFVGLLLACVHGGMV--LKGKE----LLKSMEEVHKIS 350
Query: 188 ATI-----LVDMYAKCGFLKYALMVFELMEER-NVISWTALICGSAHRGYSEDA 235
+ ++D+ + G L+ A + + M + + + W L+ + G E A
Sbjct: 351 PKLEHYGCMIDLLGRVGKLQEACDLIKTMPMKPDAVVWGTLLGACSFHGNVEIA 404
>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 780
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 142/394 (36%), Positives = 222/394 (56%), Gaps = 5/394 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF +M + V + +++ +L +C +L + S+I GF H+ + ++L YV
Sbjct: 261 LFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYV 320
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
A+ LF+++ E++ V+W TM+ G++K GN EA F+ MP + A+W+A+I+A
Sbjct: 321 KCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISA 380
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y G L LF EM ++ PD++T+ L + LG++ G H +I K++
Sbjct: 381 YEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDF--GHWIHVYIKKHDI 438
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
LN +AT L+DMYAKCG L A+ VF +E ++V W+A+I A G + AL LF
Sbjct: 439 NLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSS 498
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M +KPN +TFT +L AC H GLV+EG + F+ ++ Y + P+IQHY C+VD+FG+AG
Sbjct: 499 MLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVDIFGRAG 558
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
LE+A I M + P +WG+ L AC H ++AE + L + +P N G F L+
Sbjct: 559 LLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLEL-EPCNHGA-FVLL 616
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y WE +RKLM + +V+K S I
Sbjct: 617 SNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSI 650
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 97/367 (26%), Positives = 161/367 (43%), Gaps = 37/367 (10%)
Query: 11 SVPSDSFSI-LHILKSCTHFNN-------------LTVIHH---LHSHILKLGFISHVYV 53
S P+ SF I LH+L SC+ F N L V+H LH ++K S +++
Sbjct: 151 SDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFI 210
Query: 54 ATSLLHEYVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNV 112
SL++ Y + + A ++F +P ++ V+WN MI ++ G +A F+ M +++V
Sbjct: 211 LNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDV 270
Query: 113 ASWSAMIAAYLNAGAYDPGLKLFR---EMISNEGLTPDQMTIGAVLS---GCSHLGSVGL 166
+ + L+A A L+ R I N G T + A+L C +
Sbjct: 271 KPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKD 330
Query: 167 LMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGS 226
L K + IV W T ++D +AK G A +F+ M + +W ALI
Sbjct: 331 LFNKMSEKDIV--SW-------TTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAY 381
Query: 227 AHRGYSEDALSLFEMMQ-ATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP 285
G ALSLF MQ + KP+E+T L A G +D G + + +++D+
Sbjct: 382 EQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGH-WIHVYIKKHDINL 440
Query: 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQA 345
++D++ K G L +A EV + +V +W + + A + Q A +
Sbjct: 441 NCHLATSLLDMYAKCGNLNKAMEVFHAVE-RKDVYVWSAMIGALAMYGQGKAALDLFSSM 499
Query: 346 LRM-VKP 351
L +KP
Sbjct: 500 LEAYIKP 506
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/324 (24%), Positives = 137/324 (42%), Gaps = 35/324 (10%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFD 74
+S +IL + CT N + +H+H+L+ Y A+ LL Y ++S
Sbjct: 71 ESTNILEFIDQCT---NTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAISS--------- 118
Query: 75 ELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKL 134
+ A++ F ++P N+ W+ +I Y ++ +
Sbjct: 119 -------------------CSCLIYAKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLI 159
Query: 135 FREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDM 194
F M+ + P++ T + S L + L G HG ++K + I L++
Sbjct: 160 FLHMLHSCSEFPNKFTFPFLFKAASRLKVLHL--GSVLHGMVIKASLSSDLFILNSLINF 217
Query: 195 YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTF 254
Y G A VF M ++V+SW A+I A G + AL LF+ M+ VKPN +T
Sbjct: 218 YGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITM 277
Query: 255 TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR 314
VL+AC ++ GR I+ E I + M+D++ K G + +A ++ M
Sbjct: 278 VSVLSACAKKIDLEFGRWICSYIENNGFTEHLILN-NAMLDMYVKCGCINDAKDLFNKMS 336
Query: 315 LEPNVIIWGSFLAACKEHKQFDMA 338
E +++ W + L + +D A
Sbjct: 337 -EKDIVSWTTMLDGHAKLGNYDEA 359
>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic [Vitis vinifera]
gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 139/396 (35%), Positives = 229/396 (57%), Gaps = 23/396 (5%)
Query: 6 QMHRQSVPSDSFSILHILKSCTHFNNLTVIHH---LHSHILKLGFISHVYVATSLLHEYV 62
Q HR + PS + K+ + L + H+ LH ++KLG ++ +++ Y+
Sbjct: 122 QPHRLTYPS-------VFKA---YAQLGLAHYGAQLHGRVIKLGLQFDPFIRNTII--YM 169
Query: 63 VTSFGFARKLFDELPER---NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
+ GF +++ ER + V WN+MI G +K G V E+R F+ MPLRN SW++MI
Sbjct: 170 YANCGFLSEMWKAFYERMDFDIVAWNSMIMGLAKCGEVDESRKLFDEMPLRNTVSWNSMI 229
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y+ G L LF +M E + P + T+ ++L+ + LG+ L G+ H +I KN
Sbjct: 230 SGYVRNGRLREALDLFGQM-QEERIKPSEFTMVSLLNASARLGA--LKQGEWIHDYIRKN 286
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ELN + ++DMY KCG + A VFE+ + + SW +I G A G +A+ LF
Sbjct: 287 NFELNVIVTASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWNTMILGLAMNGCENEAIQLF 346
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
++ + ++P+++TF GVLTAC ++GLVD+ ++YF ++ + Y +EP I+HY CMVD G+
Sbjct: 347 SRLECSNLRPDDVTFVGVLTACNYSGLVDKAKEYFSLMSKTYKIEPSIKHYSCMVDTLGR 406
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG LEEA E+IR M + P+ IIW S L+AC++H ++A+R K + + ND +
Sbjct: 407 AGLLEEAEELIRNMPVNPDAIIWSSLLSACRKHGNVELAKRAAKHIVDL--DGNDSCGYV 464
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y ++++E A R M + + K G S+I
Sbjct: 465 LLSNIYAASDQFEEAMEQRLSMKEKQIEKEPGCSLI 500
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 88/363 (24%), Positives = 145/363 (39%), Gaps = 78/363 (21%)
Query: 24 KSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG----FARKLFDELPER 79
K CT +L IH +H+LK G H + +L + TS G +A +F ++
Sbjct: 32 KHCTTMKDLQKIH---AHLLKTGLAKHPLAVSPVL-AFCATSPGGDINYAYLVFTQIHSP 87
Query: 80 NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI 139
N +WNT+I+G+S+S A + LF +M+
Sbjct: 88 NLFSWNTIIRGFSQSSTPHHA-------------------------------ISLFIDML 116
Query: 140 SNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG 199
+ P ++T +V + LG G HG ++K + + I ++ MYA CG
Sbjct: 117 IVSSVQPHRLTYPSVFKAYAQLGLAHY--GAQLHGRVIKLGLQFDPFIRNTIIYMYANCG 174
Query: 200 FLK------YALMVFEL-------------------------MEERNVISWTALICGSAH 228
FL Y M F++ M RN +SW ++I G
Sbjct: 175 FLSEMWKAFYERMDFDIVAWNSMIMGLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVR 234
Query: 229 RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQ 288
G +AL LF MQ +KP+E T +L A G + +G I + + E +
Sbjct: 235 NGRLREALDLFGQMQEERIKPSEFTMVSLLNASARLGALKQGEWIHDYIRKN-NFELNVI 293
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRTMRLEP----NVIIWGSFLAACKEHKQFDMAERVIKQ 344
++D++ K G + EA++V L+ N +I G + C E++ + R+
Sbjct: 294 VTASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWNTMILGLAMNGC-ENEAIQLFSRLECS 352
Query: 345 ALR 347
LR
Sbjct: 353 NLR 355
>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 616
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 140/382 (36%), Positives = 224/382 (58%), Gaps = 12/382 (3%)
Query: 17 FSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLF 73
FSI +LK+C +H +LK +V S++ Y+ FG AR++F
Sbjct: 110 FSIPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYI--DFGEIELARRVF 167
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
D +P R+ V+WN+MI GY K+G + A+ FE M ++V +W++MI+AY+ L
Sbjct: 168 DRMPNRDVVSWNSMIAGYLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALD 227
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ-IATILV 192
LFREM+S GL PD I +VLS + LG V GK H ++ N+ EL+ I + L+
Sbjct: 228 LFREMLS-LGLRPDGPAIVSVLSAIADLGFVE--EGKWLHAYVSMNKIELSSGFIGSALI 284
Query: 193 DMYAKCGFLKYALMVFE-LMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE 251
DMY+KCG+++ A VF + RN+ W ++I G A G + +AL +F M+ ++PNE
Sbjct: 285 DMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNE 344
Query: 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR 311
+TF G+L+ C H GLV+EG+ YF+ + E+Y + PRIQHYGCM+DLFG+AG LE+A VI+
Sbjct: 345 ITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQ 404
Query: 312 TMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKW 371
M E +++ W + L+A +H ++ + +A+ + +D + L+ ++Y +W
Sbjct: 405 NMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELAP--DDSSSYVLLSNIYAKAGRW 462
Query: 372 EGAERVRKLMLNQNVRKARGSS 393
+ ++R +M + V+K G S
Sbjct: 463 DDVAKIRLMMRQRGVKKIAGCS 484
>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 613
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 139/395 (35%), Positives = 225/395 (56%), Gaps = 35/395 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L+ QMH + D+ + +LK+ ++ +HS ++ GF S V+V
Sbjct: 125 LELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQ------ 178
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
NT++ Y+ G+ A FE M RN+ +W+++I
Sbjct: 179 ------------------------NTLVHMYAACGHAESAHKLFELMAERNLVTWNSVIN 214
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y G + L LFREM G+ PD T+ ++LS C+ LG++ L G+ AH ++VK
Sbjct: 215 GYALNGRPNEALTLFREM-GLRGVEPDGFTMVSLLSACAELGALAL--GRRAHVYMVKVG 271
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ N L+D+YAKCG ++ A VF+ MEE++V+SWT+LI G A G+ ++AL LF+
Sbjct: 272 LDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFK 331
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
++ G+ P+E+TF GVL AC H G+VDEG YFK + EEY + P+I+HYGCMVDL G+A
Sbjct: 332 ELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRA 391
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G +++A+E I+ M ++PN ++W + L AC H + E V + L ++P++ G + L
Sbjct: 392 GLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGE-VARAQLLQLEPKHSGD-YVL 449
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ +LY ++W +VR+ ML + V+K G S++
Sbjct: 450 LSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLV 484
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 117/228 (51%), Gaps = 7/228 (3%)
Query: 100 ARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCS 159
A F ++ N+ +W+ MI Y + P L+L+R+M + PD T +L +
Sbjct: 93 AHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQM-HVSCIEPDTHTYPFLLKAIA 151
Query: 160 HLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISW 219
L V G+ H ++N +E + LV MYA CG + A +FELM ERN+++W
Sbjct: 152 KLMDVR--EGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTW 209
Query: 220 TALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMID 278
++I G A G +AL+LF M GV+P+ T +L+AC G + GR+ + M+
Sbjct: 210 NSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMV- 268
Query: 279 EEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
+ L+ + ++DL+ K G + +A++V M E +V+ W S +
Sbjct: 269 -KVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEME-EKSVVSWTSLI 314
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 87/195 (44%), Gaps = 9/195 (4%)
Query: 170 KSAHGFIVKNEWEL-NEQIATILV-DMYAKCGFLKYALMVFELMEERNVISWTALICGSA 227
+ H F +++ L N + L+ + + C + YA +F ++ N+ +W +I G A
Sbjct: 57 RQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYA 116
Query: 228 HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRI 287
AL L+ M + ++P+ T+ +L A V EG K I E +
Sbjct: 117 ESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHS-IAIRNGFESLV 175
Query: 288 QHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ-AL 346
+V ++ G E A+++ M E N++ W S + + + + A + ++ L
Sbjct: 176 FVQNTLVHMYAACGHAESAHKLFELM-AERNLVTWNSVINGYALNGRPNEALTLFREMGL 234
Query: 347 RMVKPENDGGVFTLI 361
R V+P DG FT++
Sbjct: 235 RGVEP--DG--FTMV 245
>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Cucumis sativus]
Length = 679
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 140/396 (35%), Positives = 223/396 (56%), Gaps = 8/396 (2%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-V 62
+ MH D F+ +LKS ++ + +H IL++G +YVATSL+ Y
Sbjct: 159 YFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGK 218
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
A K+FD + R+ +WN ++ GY+KSG + A FERMP RN+ SW+ MI+ Y
Sbjct: 219 CGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGY 278
Query: 123 LNAGAYDPGLKLFREMIS-NEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
+G L LF EM+ + G+ P+ +TI +VL C+ L + L G+ H +
Sbjct: 279 SQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLST--LERGRQIHELACRMGL 336
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELME--ERNVISWTALICGSAHRGYSEDALSLF 239
N + L MYAKCG L A F+ + E+N+I+W +I A G+ A+S F
Sbjct: 337 NSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTF 396
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M G++P+++TFTG+L+ C H+GLVD G KYF + Y + PR++HY C+ DL G+
Sbjct: 397 REMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGR 456
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG L EA +++ M + IWGS LAAC++H+ +MAE ++ L +++PEN G +
Sbjct: 457 AGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARK-LFVLEPENTGN-YV 514
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y +W+ +++R ++ +Q +K+ G S I
Sbjct: 515 LLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWI 550
>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 786
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 145/400 (36%), Positives = 233/400 (58%), Gaps = 10/400 (2%)
Query: 1 MQLFSQMHRQSVPS-DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+ +FS+M R S+ S D F++ +L +C + L + +HSHI+ GF V +L+
Sbjct: 263 LDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALIS 322
Query: 60 EYV-VTSFGFARKLFDELPERNAVT--WNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
Y AR+L ++ ++ + ++ GY K G++ +A++ F + R+V +W+
Sbjct: 323 MYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWT 382
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
AMI Y G+Y + LFR M+ G P+ T+ A+LS L GK HG
Sbjct: 383 AMIVGYEQHGSYGEAINLFRSMVGG-GQRPNSYTLAAMLS--VASSLASLSHGKQIHGSA 439
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSEDA 235
VK+ + ++ L+ MYAK G + A F+L+ ER+ +SWT++I A G++E+A
Sbjct: 440 VKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEA 499
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
L LFE M G++P+ +T+ GV +AC H GLV++GR+YF M+ + + P + HY CMVD
Sbjct: 500 LELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVD 559
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
LFG+AG L+EA E I M +EP+V+ WGS L+AC+ HK D+ +V + L +++PEN G
Sbjct: 560 LFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLG-KVAAERLLLLEPENSG 618
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++ + +LY+ KWE A ++RK M + V+K +G S I
Sbjct: 619 A-YSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWI 657
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/380 (25%), Positives = 178/380 (46%), Gaps = 69/380 (18%)
Query: 24 KSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGF-ARKLFDELPERNAV 82
KS N +H ++K G + VY+ +L++ Y T + ARKLFDE+P R A
Sbjct: 22 KSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAF 81
Query: 83 TWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNE 142
+WNT++ YSK G++ +FF+++P R+ SW+ MI Y N G Y +++ +M+ E
Sbjct: 82 SWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMV-KE 140
Query: 143 GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC---- 198
G+ P Q T+ VL+ + + + GK H FIVK N ++ L++MYAKC
Sbjct: 141 GIEPTQFTLTNVLASVA--ATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPM 198
Query: 199 ---------------------------GFLKYALMVFELMEERNVISWTALICGSAHRGY 231
G + A+ FE M ER++++W ++I G RGY
Sbjct: 199 MAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGY 258
Query: 232 SEDALSLF-EMMQATGVKPNEMTFTGVLTAC-----------VHTGLVDEG--------- 270
AL +F +M++ + + P+ T VL+AC +H+ +V G
Sbjct: 259 DLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLN 318
Query: 271 ------------RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPN 318
++I++ + +I+ + ++D + K G + +A + +++ + +
Sbjct: 319 ALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLK-DRD 377
Query: 319 VIIWGSFLAACKEHKQFDMA 338
V+ W + + ++H + A
Sbjct: 378 VVAWTAMIVGYEQHGSYGEA 397
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 93/386 (24%), Positives = 183/386 (47%), Gaps = 43/386 (11%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+++ M ++ + F++ ++L S + +HS I+KLG +V V+ SLL+
Sbjct: 131 IRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNM 190
Query: 61 YVVTSFGF-ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A+ +FD + R+ +WN MI + + G + A FE+M R++ +W++MI
Sbjct: 191 YAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMI 250
Query: 120 AAYLNAGAYD-PGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
+ + N YD L +F +M+ + L+PD+ T+ +VLS C++L L +GK H IV
Sbjct: 251 SGF-NQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEK--LCIGKQIHSHIVT 307
Query: 179 NEWELNEQIATILVDMYAKC----------------------------GFLKYALM---- 206
++++ + L+ MY++C G++K M
Sbjct: 308 TGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAK 367
Query: 207 -VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG 265
+F +++R+V++WTA+I G G +A++LF M G +PN T +L+
Sbjct: 368 NIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLA 427
Query: 266 LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSF 325
+ G++ + ++ + ++ ++ KAG + A +R E + + W S
Sbjct: 428 SLSHGKQIHGSAVKSGEIYS-VSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSM 486
Query: 326 LAACKEH----KQFDMAERVIKQALR 347
+ A +H + ++ E ++ + LR
Sbjct: 487 IIALAQHGHAEEALELFETMLMEGLR 512
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 10/180 (5%)
Query: 195 YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTF 254
Y+K G + F+ + +R+ +SWT +I G + G A+ + M G++P + T
Sbjct: 90 YSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTL 149
Query: 255 TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR 314
T VL + T ++ G+K I + L + +++++ K G A V M
Sbjct: 150 TNVLASVAATRCMETGKKVHSFI-VKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMV 208
Query: 315 LEPNVIIWGSFLAACKEHKQFD--------MAERVIKQALRMVKPENDGGVFTLICDLYT 366
+ ++ W + +A + Q D MAER I M+ N G D+++
Sbjct: 209 VR-DISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFS 267
>gi|222636196|gb|EEE66328.1| hypothetical protein OsJ_22569 [Oryza sativa Japonica Group]
Length = 1287
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 136/395 (34%), Positives = 233/395 (58%), Gaps = 7/395 (1%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV- 62
F M + + D +++ +L +C+ +L + LH + + G + +L+ Y
Sbjct: 166 FKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHLLVKEKGMSMSENLVVALIDMYAK 225
Query: 63 VTSFGFARKLFDELPE-RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
FG AR++FD + R +WN +I GY K G+V AR F++M +R++ ++++MI
Sbjct: 226 CGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITG 285
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+++G L LF M ++ L D T+ ++LS C+ LG+ L G++ H I
Sbjct: 286 YIHSGQLREALLLFMNMRRHD-LRVDNFTVVSLLSACASLGA--LPQGRALHACIELRLV 342
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
E + I T L+DMY KCG + A +VF+ M +R+V +WTA+I G A G + L F
Sbjct: 343 ETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQ 402
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M+ G +PN +++ VLTAC H+ L++EGR YF + Y++ P+I+HYGCM+DL G++G
Sbjct: 403 MRCDGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSG 462
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L+EA ++++TM ++PN +IW S L+AC+ HK+ D+A+ + L+ ++P+ D V+ +
Sbjct: 463 LLDEAMDLVKTMPMQPNSVIWASILSACRVHKRIDLAQCAAEHLLK-IEPDED-AVYVQL 520
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
++ + KWE A ++R LM + V+K G S ++
Sbjct: 521 YNICIDSRKWEDASKIRMLMEERQVKKTAGYSSVT 555
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 110/363 (30%), Positives = 177/363 (48%), Gaps = 46/363 (12%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVI--HHLHSHILKLGFISHV-YVATSLLH 59
LF +M R +V D F+ H L C+ + + LH+ L+ S +VA SL+H
Sbjct: 31 LFRRMRRAAVRPDGFT-FHFLFKCSSSSRPRALLCTMLHAACLRTMLPSAAPFVANSLIH 89
Query: 60 EYVVTSFGFA---RKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
Y T G A R+ FDE+P ++AV+W +I G +K G + +AR + P+R+V SW+
Sbjct: 90 MY--TELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGMLSDARLLLAQAPVRDVISWT 147
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
++IAAY A + F+ M+S EG+ PD +T+ VLS CS L + L G S H +
Sbjct: 148 SLIAAYSRADRAKEAVDCFKNMLS-EGIAPDDVTVIGVLSACSQLKDLEL--GCSLHLLV 204
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFEL-------------------------- 210
+ ++E + L+DMYAKCG +A VF+
Sbjct: 205 KEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVA 264
Query: 211 ------MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
ME R++I++ ++I G H G +AL LF M+ ++ + T +L+AC
Sbjct: 265 RSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASL 324
Query: 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324
G + +GR I+ +E I ++D++ K G + EA V + M + +V W +
Sbjct: 325 GALPQGRALHACIELRL-VETDIYIGTALLDMYMKCGRVNEATIVFQRMG-KRDVHAWTA 382
Query: 325 FLA 327
+A
Sbjct: 383 MIA 385
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 154/311 (49%), Gaps = 4/311 (1%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
T+I Y K + F +P + +++I + L +D L++ MI EG+
Sbjct: 975 TTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITSSLGCNMFDAALEILHCMIV-EGV 1033
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
TPD +T A + S S L + H +VK +E++ + + L+ YA G L +
Sbjct: 1034 TPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSS 1093
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
++FE + + NVI +TA+I A G A+ LF+ M ++G+KP+ +TF + C
Sbjct: 1094 HLIFEGLLDPNVICFTAIISACARYGDGARAMELFDQMVSSGLKPDNVTFLCAIAGCDQA 1153
Query: 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324
G+ +EGR +++ +L+P +H+ CMV+L + GF++EA E++ L W S
Sbjct: 1154 GMFEEGRLVIELMRASRELDPDERHFACMVNLLSRDGFVKEAMEMMEQSPLRHYTKAWSS 1213
Query: 325 FLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384
L +CK H + + +R + + + D + + + E A R++++ +
Sbjct: 1214 LLQSCKAHGENVLGKRAANMLIDVGR--KDPATTLQVSNFFNDIGDRETALRIKEMTNVK 1271
Query: 385 NVRKARGSSVI 395
V+K+ G S+I
Sbjct: 1272 EVKKS-GHSLI 1281
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 87/369 (23%), Positives = 156/369 (42%), Gaps = 67/369 (18%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNN-LTVIHHLHSHILKLGFI-SHVYVATSLLHEY 61
F M RQ + + S + +K C L LH +LK G+I S+++++ SL+ Y
Sbjct: 820 FLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNIFLSNSLVDLY 879
Query: 62 --VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
+ S + L D L E + ++WN+++ Y+ G++ EA + ++M W +
Sbjct: 880 SAIGDSVDTVKALNDILSE-DVISWNSILSMYADRGHMKEAVYYLKQM------LWHGKM 932
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
P ++ F +++ G T D +G HG + K
Sbjct: 933 ----------PSVRSFVSLLALSGKTGDWQ------------------LGVQIHGIVHKL 964
Query: 180 EWELNE-QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ + + T L+DMY KC ++L +F + + +LI S + AL +
Sbjct: 965 GFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITSSLGCNMFDAALEI 1024
Query: 239 FEMMQATGVKPNEMTFTGV-----------LTAC--VHTGLVDEGRKYFKMIDEEYDLEP 285
M GV P+++TF+ LT+C +H+ LV G F+M +
Sbjct: 1025 LHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLG---FEM--DMAVCSS 1079
Query: 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQA 345
I Y C AG L ++ + + L+PNVI + + ++AC + A + Q
Sbjct: 1080 LITAYAC-------AGQLSSSHLIFEGL-LDPNVICFTAIISACARYGDGARAMELFDQM 1131
Query: 346 LRM-VKPEN 353
+ +KP+N
Sbjct: 1132 VSSGLKPDN 1140
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 125/287 (43%), Gaps = 43/287 (14%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF M R + D+F+++ +L +C L LH+ I + +Y+ T+LL Y+
Sbjct: 298 LFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYM 357
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
K G V EA F+RM R+V +W+AMIA
Sbjct: 358 ------------------------------KCGRVNEATIVFQRMGKRDVHAWTAMIAGL 387
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI-VKNEW 181
G GL+ F +M +G P+ ++ AVL+ CSH L+ + F ++ +
Sbjct: 388 AFNGMGKAGLEYFYQM-RCDGFQPNPVSYIAVLTACSH----SCLLNEGRLYFDEMRILY 442
Query: 182 ELNEQIA--TILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSEDALSL 238
++ QI ++D+ + G L A+ + + M + N + W +++ SA R + L+
Sbjct: 443 NIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASIL--SACRVHKRIDLAQ 500
Query: 239 FEMMQATGVKPNE-MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLE 284
++P+E + + C+ + ++ K +M+ EE ++
Sbjct: 501 CAAEHLLKIEPDEDAVYVQLYNICIDSRKWEDASK-IRMLMEERQVK 546
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 109/263 (41%), Gaps = 60/263 (22%)
Query: 13 PSD-SFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARK 71
P D +FS S + +LT LHS ++KLGF
Sbjct: 1035 PDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLGF------------------------ 1070
Query: 72 LFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPG 131
E + +++I Y+ +G + + FE + NV ++A+I+A G
Sbjct: 1071 ------EMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACARYGDGARA 1124
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV--GLLMGKSAHGFIVKNEWELNEQIAT 189
++LF +M+S+ GL PD +T ++GC G G L+ + E + +E+
Sbjct: 1125 MELFDQMVSS-GLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRA---SRELDPDERHFA 1180
Query: 190 ILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP 249
+V++ ++ GF+K A+ E+ME+ S R Y++ SL + +A G
Sbjct: 1181 CMVNLLSRDGFVKEAM---EMMEQ------------SPLRHYTKAWSSLLQSCKAHG--- 1222
Query: 250 NEMTFTGVLTACVHTGLVDEGRK 272
VL L+D GRK
Sbjct: 1223 -----ENVLGKRAANMLIDVGRK 1240
>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 572
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 144/402 (35%), Positives = 230/402 (57%), Gaps = 11/402 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ ++ +M V D + +L S + +L + H+ IL G +V TSLL+
Sbjct: 46 ISVYFRMRHHCVSPDFHTFPFLLPSFHNPIHLPLGQRTHAQILLFGLDKDPFVRTSLLNM 105
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A ++FDE ++ WN+++ Y+K+G + AR F+ MP RNV SWS +I
Sbjct: 106 YSSCGDLSSALRIFDESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLI 165
Query: 120 AAYLNAGAYDPGLKLFREM---ISNEG-LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
Y+ G Y L LFREM NE ++P++ T+ VLS C LG+ L GK H +
Sbjct: 166 NGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGA--LEQGKWVHSY 223
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFE-LMEERNVISWTALICGSAHRGYSED 234
I K E++ + T L+DMYAKCG L+ A VF+ L +++V +++A+IC A G +++
Sbjct: 224 IDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSKKDVKAYSAMICCLAMYGLTDE 283
Query: 235 ALSLF-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293
+F EM + + PN +TF G+L ACVH GL+++G+ YFKM+ EE+ + P IQHYGCM
Sbjct: 284 CFQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKGKSYFKMMTEEFGITPSIQHYGCM 343
Query: 294 VDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353
VDL+G++G ++EA I +M +EP+V+IWGS L+ + E +K+ + + P N
Sbjct: 344 VDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIEL-DPMN 402
Query: 354 DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G + L+ ++Y +W +R+R M + ++K G S +
Sbjct: 403 SGA-YVLLSNVYAKTGRWIEVKRIRHEMEVKGIKKVPGCSYV 443
>gi|225433758|ref|XP_002267783.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 636
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 153/441 (34%), Positives = 231/441 (52%), Gaps = 54/441 (12%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSC-------------THFNNLTVIHHLHSHILKLGFIS 49
L++ MHR+ + SD F+ LK+C T + +H + +LG
Sbjct: 199 LYNFMHRKDIKSDHFTYPFGLKACARVLWCNEGDIKCTQLDIACKGAEIHCRLFRLGLDQ 258
Query: 50 HVYVATSLLHEYVVTSF-GFARKLFDEL-------------------------------P 77
++ SL++ Y F AR +FDE+ P
Sbjct: 259 DCFIQNSLVYLYSQCGFLDLARCVFDEMTEKTITSWNVMISAYDQINDFDSADSLIGSMP 318
Query: 78 ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
+N V+WN +I Y + G + +A+ F+ MP R+ SW++MIA Y+ Y L LFRE
Sbjct: 319 GKNVVSWNMLIARYIRLGKIEDAKVVFQEMPERDAVSWNSMIAGYVQIKDYARALALFRE 378
Query: 138 M-ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA 196
M I+N T +T+ +VL C+ G+ L +G+ H + + E+++ ++ LVDMYA
Sbjct: 379 MEIANVEAT--DITLISVLGACAETGA--LEIGRKIHLSLKQREYKIEGYLSNALVDMYA 434
Query: 197 KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT--GVKPNEMTF 254
KCG L A VF ++ +++ W A+I A GY E+AL LF M+ + G +PN +TF
Sbjct: 435 KCGHLNLAWEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVDGARPNRVTF 494
Query: 255 TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR 314
GVL AC H GLVDEGR +F + EY + P I+HYGCMVDL + G L+EA+ +I+TM
Sbjct: 495 IGVLIACSHKGLVDEGRTFFNRMVNEYKIMPDIKHYGCMVDLLSRCGLLKEAHHMIKTMP 554
Query: 315 LEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGA 374
E N ++W + L AC+ H D+AE +Q +M +P DG + L+ ++Y ++W
Sbjct: 555 FEANSVLWRTLLGACRVHHHVDLAEESFQQLGKM-EPLRDGD-YVLLSNIYAEAQRWNDV 612
Query: 375 ERVRKLMLNQNVRKARGSSVI 395
ERVR M+ V K GSS I
Sbjct: 613 ERVRSEMIGSGVPKKPGSSHI 633
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 85/394 (21%), Positives = 152/394 (38%), Gaps = 94/394 (23%)
Query: 16 SFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKL 72
+ + +L +++ + I K G +H +V + ++ ++ G +A+ +
Sbjct: 109 TIRVPDLLSKLQQLSSVKEVEQTQCLITKSGLFNHPFVISKIISFLSLSPLGSLVYAQAI 168
Query: 73 FDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGL 132
F++ N NTMI+ Y+KS +A + M +++ S + Y GL
Sbjct: 169 FEDTAMDNPFVCNTMIRAYAKSVFPIKAIYLYNFMHRKDIKS---------DHFTYPFGL 219
Query: 133 K-LFREMISNEG-LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATI 190
K R + NEG + Q+ I G H + + + + I
Sbjct: 220 KACARVLWCNEGDIKCTQLDIAC--------------KGAEIHCRLFRLGLDQDCFIQNS 265
Query: 191 LVDMYAKCGFLKYALMVFELMEE-------------------------------RNVISW 219
LV +Y++CGFL A VF+ M E +NV+SW
Sbjct: 266 LVYLYSQCGFLDLARCVFDEMTEKTITSWNVMISAYDQINDFDSADSLIGSMPGKNVVSW 325
Query: 220 TALICGSAHRGYSEDA-------------------------------LSLFEMMQATGVK 248
LI G EDA L+LF M+ V+
Sbjct: 326 NMLIARYIRLGKIEDAKVVFQEMPERDAVSWNSMIAGYVQIKDYARALALFREMEIANVE 385
Query: 249 PNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
++T VL AC TG ++ GRK + + EY +E + + +VD++ K G L A+
Sbjct: 386 ATDITLISVLGACAETGALEIGRKIHLSLKQREYKIEGYLSN--ALVDMYAKCGHLNLAW 443
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERV 341
EV ++++ ++ W + + + H + A R+
Sbjct: 444 EVFSELKMK-HISCWNAMIVSLAVHGYCEEALRL 476
>gi|356532565|ref|XP_003534842.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g50990-like [Glycine max]
Length = 569
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 223/383 (58%), Gaps = 22/383 (5%)
Query: 18 SILH-ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV------VTSFGFAR 70
++LH +L+ C +L H+ ++ LGF ++ + SL+ Y + F+R
Sbjct: 71 TVLHRVLERCRVSTDLKTATKTHARVVVLGFATYPSLVASLISTYAQCHRPHIALHVFSR 130
Query: 71 KLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDP 130
L + + N +I+ K G A+ F +M +R+V +W++MI Y+ +
Sbjct: 131 IL-------DLFSMNLVIESLVKGGQCDIAKKVFGKMSVRDVVTWNSMIGGYVRNLRFFD 183
Query: 131 GLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATI 190
L +FR M+S + + PD T +V++ C+ LG++G K HG +V+ ELN ++
Sbjct: 184 ALSIFRRMLSAK-VEPDGFTFASVVTACARLGALG--NAKWVHGLMVEKRVELNYILSAA 240
Query: 191 LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250
L+DMYAKCG + + VFE + +V W A+I G A G + DA +F M+ V P+
Sbjct: 241 LIDMYAKCGRIDVSRQVFEEVARDHVSVWNAMISGLAIHGLAMDATLVFSRMEMEHVLPD 300
Query: 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI 310
+TF G+LTAC H GLV+EGRKYF M+ + ++P+++HYG MVDL G+AG +EEAY VI
Sbjct: 301 SITFIGILTACSHCGLVEEGRKYFGMMQNRFMIQPQLEHYGTMVDLLGRAGLMEEAYAVI 360
Query: 311 RTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEK 370
+ MR+EP+++IW + L+AC+ H++ ++ E I R+ + G F L+ ++Y
Sbjct: 361 KEMRMEPDIVIWRALLSACRIHRKKELGEVAIANISRL-----ESGDFVLLSNMYCSLNN 415
Query: 371 WEGAERVRKLMLNQNVRKARGSS 393
W+GAERVR++M + VRK+RG S
Sbjct: 416 WDGAERVRRMMKTRGVRKSRGKS 438
>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 687
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 142/403 (35%), Positives = 227/403 (56%), Gaps = 13/403 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLG-FISHVYVATSLLH 59
+++F +M + V D ++ ++ +C + + +H+ ++K F + + + +LL
Sbjct: 237 LKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLD 296
Query: 60 EYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y AR +FD +P R+ V+ +M+ GY+K+ V AR F M +++V +W+A+
Sbjct: 297 MYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNAL 356
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
IA G + L LFR ++ E + P T G +L+ C++L L +G+ AH ++K
Sbjct: 357 IAGCTQNGENEEALILFR-LLKRESVWPTHYTFGNLLNACANLAD--LQLGRQAHSHVLK 413
Query: 179 N--EWELNEQ----IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
+ ++ E + L+DMY KCG ++ VF+ M E++ +SW A+I G A G+
Sbjct: 414 HGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNGFG 473
Query: 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC 292
AL +F M +G P+ +T GVL AC H GL+DEGR YF+ + ++ L P HY C
Sbjct: 474 NKALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTC 533
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE 352
MVDL G+AG+LEEA +I M ++P+ I+WGS LAACK H+ + E V+K+ L V PE
Sbjct: 534 MVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAACKVHRNIQLGEYVVKKLLE-VDPE 592
Query: 353 NDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
N G + L+ ++Y N W+ RVRKLM + V K G S I
Sbjct: 593 NSGP-YVLLSNMYAENRDWKNVVRVRKLMRQRGVVKQPGCSWI 634
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 154/306 (50%), Gaps = 4/306 (1%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLF 73
DS +L C + +H+ I+K F S ++ L+ Y ARKLF
Sbjct: 18 DSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLF 77
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
D + ERN +WN++I ++KSG + +A FE+MP + SW++MI+ + G +D L
Sbjct: 78 DRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALV 137
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
F +M G ++ + G+ LS C+ L L +G H + ++ + + + + LVD
Sbjct: 138 YFAQM-HGHGFLVNEYSFGSALSACAGLQD--LKLGSQIHSLVYRSNYLSDVYMGSALVD 194
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
MY+KCG ++YA VF+ M R+ +SW +LI G ++AL +F M GV+P+E+T
Sbjct: 195 MYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVT 254
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
V++AC + EG++ + + + + ++D++ K + EA + M
Sbjct: 255 LASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMM 314
Query: 314 RLEPNV 319
+ V
Sbjct: 315 PIRSVV 320
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 89/363 (24%), Positives = 163/363 (44%), Gaps = 73/363 (20%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV- 62
F+QMH + +S L +C +L + +HS + + ++S VY+ ++L+ Y
Sbjct: 139 FAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSK 198
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
+A+ +FDE+ R+ V+WN++I Y ++G V
Sbjct: 199 CGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPV------------------------- 233
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK-NEW 181
D LK+F EMI G+ PD++T+ +V+S C+ + ++ G+ H +VK +E+
Sbjct: 234 ------DEALKIFVEMIKC-GVEPDEVTLASVVSACATISAIK--EGQQIHARVVKCDEF 284
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEER--------------------------- 214
+ + L+DMYAKC + A ++F++M R
Sbjct: 285 RNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSN 344
Query: 215 ----NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
+VI+W ALI G G +E+AL LF +++ V P TF +L AC + + G
Sbjct: 345 MMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLG 404
Query: 271 RKYFKMIDE-----EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSF 325
R+ + + +Y + + ++D++ K G +E V + M LE + + W +
Sbjct: 405 RQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHM-LEKDCVSWNAM 463
Query: 326 LAA 328
+
Sbjct: 464 IVG 466
>gi|296084034|emb|CBI24422.3| unnamed protein product [Vitis vinifera]
Length = 502
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 146/396 (36%), Positives = 234/396 (59%), Gaps = 25/396 (6%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHF--NNLTVIHHLHSHILKLGF-ISHVYVATSLLHE 60
FS+M V + + L +L +CT F L +H+++ KLG +V V T+L+
Sbjct: 77 FSRMQIAGVRPNHITFLTLLSACTDFPLEGLRFGGSIHAYVRKLGLDTENVMVGTALVDM 136
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A +FDE+ RN+V+WNTMI G ++G V EA F++M R+ SW++MI
Sbjct: 137 YSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSERDAISWTSMI 196
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
++ G ++ L+ FREM G+ PD +TI +VL+ C++LG++GL G + F++K
Sbjct: 197 GGFVKKGCFEQALEWFREM-QLAGVEPDYVTIISVLAACANLGALGL--GLWINRFVMKQ 253
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+++ N +I+ L+DMY++CG ++ A VFE M +R+++SW ++I G A G++E+AL F
Sbjct: 254 DFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALNGHAEEALEFF 313
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+M+ G H+GLVDEG ++F ++ + PRI+HYGC+VDL+ +
Sbjct: 314 NLMRKEG----------------HSGLVDEGLQFFDIMKRTRKISPRIEHYGCLVDLYSR 357
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG LE+A VI M ++PN ++ GS LAAC+ H +AER++K L V P +D +
Sbjct: 358 AGRLEDALNVIANMPMKPNEVVLGSLLAACRTHGDVGLAERLMKY-LCEVDPGSDSN-YV 415
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y +W+GA +VRK M + K G S I
Sbjct: 416 LLSNIYAAVGRWDGASKVRKKMKALGIHKKPGFSSI 451
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 118/284 (41%), Gaps = 66/284 (23%)
Query: 77 PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFR 136
P V+W + I + ++G + EA F RM +
Sbjct: 50 PIDPIVSWTSSIALHCRNGQLPEAAAEFSRMQI--------------------------- 82
Query: 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWEL-NEQIATILVDMY 195
G+ P+ +T +LS C+ GL G S H ++ K + N + T LVDMY
Sbjct: 83 -----AGVRPNHITFLTLLSACTDFPLEGLRFGGSIHAYVRKLGLDTENVMVGTALVDMY 137
Query: 196 AKCGFLKY-------------------------------ALMVFELMEERNVISWTALIC 224
+KCG L A+++F+ M ER+ ISWT++I
Sbjct: 138 SKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSERDAISWTSMIG 197
Query: 225 GSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLE 284
G +G E AL F MQ GV+P+ +T VL AC + G + G + + ++ D +
Sbjct: 198 GFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGALGLGLWINRFVMKQ-DFK 256
Query: 285 PRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
I+ ++D++ + G + A +V M + +++ W S +
Sbjct: 257 DNIKISNSLIDMYSRCGCIRLARQVFEQMP-KRSLVSWNSMIVG 299
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275
++SWT+ I G +A + F MQ GV+PN +TF +L+AC L EG ++
Sbjct: 54 IVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPL--EGLRFGG 111
Query: 276 MID---EEYDLEPRIQHYG-CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAAC 329
I + L+ G +VD++ K G L+ A+ + M + N + W + + C
Sbjct: 112 SIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVR-NSVSWNTMIDGC 168
>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 776
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 129/327 (39%), Positives = 202/327 (61%), Gaps = 5/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A++LFD +P RN TWNTMI GY++ G + EA++ F++MP R+ SW+AMIA Y +G
Sbjct: 326 AKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHS 385
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L+LF ++ EG ++ + + LS C+ + V L +GK HG +VK +E +
Sbjct: 386 YEALRLF-VLMEREGGRLNRSSFSSALSTCADV--VALELGKQLHGRLVKGGYETGCFVG 442
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+ MY KCG ++ A +F+ M ++++SW +I G + G+ E+AL FE M+ G+K
Sbjct: 443 NALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLK 502
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P++ T VL+AC HTGLVD+GR+YF + ++Y + P QHY CMVDL G+AG LEEA+
Sbjct: 503 PDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHN 562
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+++ M EP+ IWG+ L A + H ++AE + M +PEN G++ L+ +LY +
Sbjct: 563 LMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAM-EPEN-SGMYVLLSNLYASS 620
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
+W ++R M ++ V+K G S I
Sbjct: 621 GRWGDVGKLRVRMRDKGVKKVPGYSWI 647
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 127/263 (48%), Gaps = 21/263 (7%)
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
F AR LFDE+PER+ V+WN MIKGY ++ N+ +AR+ FERMP R+V SW+ +++ Y
Sbjct: 106 FELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQN 165
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
G D ++F M ++ + + V + S L +L G + +V W
Sbjct: 166 GCVDDARRVFDRMPEKNDVSWNALLSAYVQN--SKLEEACVLFGSRENWALVS--W---- 217
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
L+ + K + A F+ M+ R+V+SW +I G A G ++A LF+
Sbjct: 218 ---NCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVH 274
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305
V T+T +++ + +V+E R+ F + E ++ + M+ + + +E
Sbjct: 275 DV----FTWTAMVSGYIQNRMVEEARELFDRMPERNEVS-----WNAMLAGYVQGERVEM 325
Query: 306 AYEVIRTMRLEPNVIIWGSFLAA 328
A E+ M NV W + +
Sbjct: 326 AKELFDVMPCR-NVSTWNTMITG 347
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 81/339 (23%), Positives = 142/339 (41%), Gaps = 30/339 (8%)
Query: 7 MHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS- 65
+ R+ ++S S H KS T T I + L S + + Y+ T
Sbjct: 19 LKRRYNNANSASNFHSSKSSTQ----TQIQKSQTKPLPKSGDSDIKEWNVAISSYMRTGR 74
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
A ++F +P ++V++N MI GY ++G AR F+ MP R++ SW+ MI Y+
Sbjct: 75 CSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRN 134
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
+LF M D + +LSG + G V + E N+
Sbjct: 135 RNLGKARELFERMPER-----DVCSWNTILSGYAQNGCV------DDARRVFDRMPEKND 183
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
L+ Y + L+ A ++F E ++SW L+ G + +A F+ M+
Sbjct: 184 VSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVR 243
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP--RIQHYGCMVDLFGKAGFL 303
V +++ ++T G +DE R+ F D P + + MV + + +
Sbjct: 244 DV----VSWNTIITGYAQNGEIDEARQLF-------DESPVHDVFTWTAMVSGYIQNRMV 292
Query: 304 EEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVI 342
EEA E+ M E N + W + LA + ++ +MA+ +
Sbjct: 293 EEARELFDRM-PERNEVSWNAMLAGYVQGERVEMAKELF 330
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 96/236 (40%), Gaps = 37/236 (15%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF M R+ + S L +C L + LH ++K G+ + +V +LL
Sbjct: 389 LRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLM 448
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y S A LF E+ ++ V+WNTMI GYS+ G EA FFE M
Sbjct: 449 YCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESM------------ 496
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSA-HGFIVK 178
EGL PD T+ AVLS CSH G V G+ H
Sbjct: 497 --------------------KREGLKPDDATMVAVLSACSHTGLVD--KGRQYFHTMTQD 534
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSE 233
N Q +VD+ + G L+ A + + M E + W L+ S G +E
Sbjct: 535 YGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTE 590
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 126/302 (41%), Gaps = 57/302 (18%)
Query: 84 WNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEG 143
WN I Y ++G EA F+RMP + S++AMI+ YL G ++ LF EM
Sbjct: 62 WNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEM----- 116
Query: 144 LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKY 203
P++ + W +++ Y + L
Sbjct: 117 --PERDLVS----------------------------W-------NVMIKGYVRNRNLGK 139
Query: 204 ALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263
A +FE M ER+V SW ++ G A G +DA +F+ M + N++++ +L+A V
Sbjct: 140 ARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMP----EKNDVSWNALLSAYVQ 195
Query: 264 TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWG 323
++E F E + L + C++ F K + EA + +M++ +V+ W
Sbjct: 196 NSKLEEACVLFGS-RENWAL----VSWNCLLGGFVKKKKIVEARQFFDSMKVR-DVVSWN 249
Query: 324 SFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383
+ + ++ + D A ++ ++ P +D +T + Y N E A + M
Sbjct: 250 TIITGYAQNGEIDEARQLFDES-----PVHDVFTWTAMVSGYIQNRMVEEARELFDRMPE 304
Query: 384 QN 385
+N
Sbjct: 305 RN 306
>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 143/393 (36%), Positives = 215/393 (54%), Gaps = 35/393 (8%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+++QM + + DS + +LKS + +H I+++GF S+VYV+T+L++ Y
Sbjct: 129 IYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQMGFESNVYVSTALVNMYG 188
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
S +V +AR F+ +P RN+ SW+A+I Y
Sbjct: 189 TCS------------------------------SVSDARQVFDEIPDRNIVSWNALITGY 218
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+ + + +FREM G P ++T+ VL C+HLG++ G+ +I N
Sbjct: 219 NHNRMFRKVIDVFREM-QIAGAKPVEVTMVGVLLACAHLGALN--QGRWIDDYIDHNRLR 275
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
LN + T L+DMYAKCG + A +F+ M +NV +W LI G A G E AL F M
Sbjct: 276 LNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRM 335
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
KP+E+TF GVL AC H GLV+EGR YF + EE+ L PRI+HYGCMVDL G+AGF
Sbjct: 336 IMEKFKPDEVTFLGVLCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGF 395
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362
L+EA ++I+ M ++P+ IIW L AC+ H + E IK+ L + N+G + L+
Sbjct: 396 LDEAQQLIQAMSMQPDPIIWRELLGACRIHGNIQLGEFAIKKLLEL--EPNNGENYVLLA 453
Query: 363 DLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+LY +++W+ VR++M + VRK G S I
Sbjct: 454 NLYARDQRWDKVGEVREMMDCRRVRKVPGCSSI 486
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 111/213 (52%), Gaps = 5/213 (2%)
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
++MI Y ++ + + ++ +M N G+ PD T VL + L L GK+ H
Sbjct: 111 NSMIRCYTDSNKHLHSVFIYTQMWKN-GIFPDSSTFPTVLKSVAQLCRQEL--GKAIHCC 167
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
I++ +E N ++T LV+MY C + A VF+ + +RN++SW ALI G H
Sbjct: 168 IIQMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKV 227
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
+ +F MQ G KP E+T GVL AC H G +++GR ID L + ++D
Sbjct: 228 IDVFREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHN-RLRLNVFVGTALID 286
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
++ K G ++EA ++ + MR++ NV W ++
Sbjct: 287 MYAKCGVVDEAEKIFKAMRVK-NVYTWNVLISG 318
>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 600
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 124/329 (37%), Positives = 208/329 (63%), Gaps = 7/329 (2%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL--RNVASWSAMIAAYLNAG 126
A +LF+++PERN V+W+TM+ GYSK+G++ AR F++MPL +NV +W+ +IA Y G
Sbjct: 235 AFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKG 294
Query: 127 AYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ 186
+L +M+++ GL D + ++L+ C+ G + L G H + ++ N
Sbjct: 295 LLKEADRLVDQMVAS-GLKFDAAAVISILAACTESGLLSL--GMRIHSILKRSNLGSNAY 351
Query: 187 IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
+ L+DMYAKCG LK A VF + +++++SW ++ G G+ ++A+ LF M+ G
Sbjct: 352 VLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREG 411
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
++P+++TF VL +C H GL+DEG YF +++ YDL P+++HYGC+VDL G+ G L+EA
Sbjct: 412 IRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEA 471
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366
+V++TM +EPNV+IWG+ L AC+ H + D+A+ V+ +++ D G ++L+ ++Y
Sbjct: 472 IKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKL--DPCDPGNYSLLSNIYA 529
Query: 367 MNEKWEGAERVRKLMLNQNVRKARGSSVI 395
E WEG +R M + V K G+S +
Sbjct: 530 AAEDWEGVADIRSKMKSMGVEKPSGASSV 558
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 105/226 (46%), Gaps = 39/226 (17%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+L QM + D+ +++ IL +CT L++ +HS + + S+ YV +LL Y
Sbjct: 301 RLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMY 360
Query: 62 V-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ A +F+++P+++ V+WNTM+ G G+ EA + F RM
Sbjct: 361 AKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRM------------- 407
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
EG+ PD++T AVL C+H GL+ + + ++
Sbjct: 408 -------------------RREGIRPDKVTFIAVLCSCNH---AGLIDEGIDYFYSMEKV 445
Query: 181 WELNEQIA--TILVDMYAKCGFLKYALMVFELME-ERNVISWTALI 223
++L Q+ LVD+ + G LK A+ V + M E NV+ W AL+
Sbjct: 446 YDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALL 491
>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 980
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 131/342 (38%), Positives = 207/342 (60%), Gaps = 6/342 (1%)
Query: 55 TSLLHEYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA 113
+++ YV T AR+LF+ +P RN +WNTMI GY + G++ +AR FF+ MP R+
Sbjct: 301 NAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCV 360
Query: 114 SWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH 173
SW+A+IA Y +G Y+ L +F E I +G + ++ T G LS C+ + + L +GK H
Sbjct: 361 SWAAIIAGYAQSGHYEEALNMFVE-IKQDGESLNRATFGCALSTCADIAA--LELGKQIH 417
Query: 174 GFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE 233
G VK + + L+ MY KCG + A FE +EE++V+SW ++ G A G+
Sbjct: 418 GQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGR 477
Query: 234 DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293
AL++FE M+ GVKP+E+T GVL+AC HTGL+D G +YF + ++Y + P +HY CM
Sbjct: 478 QALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCM 537
Query: 294 VDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353
+DL G+AG LEEA ++IR M +P WG+ L A + H ++ E+ + +M +P+N
Sbjct: 538 IDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKM-EPQN 596
Query: 354 DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G++ L+ +LY + +W A+++R M + V+K G S +
Sbjct: 597 S-GMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWV 637
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 135/273 (49%), Gaps = 21/273 (7%)
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
G AR+LFD +PE++ V+WN+++ GY+++G V EAR+ F+ MP +N SW+ ++AAY++
Sbjct: 127 LGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHN 186
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
G + LF E S+ L +G + LG L K V++ N
Sbjct: 187 GRIEEACLLF-ESKSDWDLISWNCLMGGFVRK-KKLGDARWLFDK----MPVRDAISWNT 240
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
I+ YA+ G L A +F+ R+V +WTA++ G G ++A + F+ M
Sbjct: 241 MISG-----YAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMP-- 293
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305
+ NE+++ ++ V T +D R+ F+ + I + M+ +G+ G + +
Sbjct: 294 --EKNEVSYNAMIAGYVQTKKMDIARELFESMPCR-----NISSWNTMITGYGQIGDIAQ 346
Query: 306 AYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
A + M + + + W + +A + ++ A
Sbjct: 347 ARKFFDMMP-QRDCVSWAAIIAGYAQSGHYEEA 378
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/303 (24%), Positives = 131/303 (43%), Gaps = 51/303 (16%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A +F+ +P R++V++N MI GY ++ AR+ F++MP R++ SW+ M+ Y+
Sbjct: 68 ALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRL 127
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV-------------------GLLMG 169
+LF M D ++ ++LSG + G V GLL
Sbjct: 128 GDARRLFDLMPEK-----DVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAA 182
Query: 170 KSAHG--------FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTA 221
+G F K++W+L L+ + + L A +F+ M R+ ISW
Sbjct: 183 YVHNGRIEEACLLFESKSDWDLISW--NCLMGGFVRKKKLGDARWLFDKMPVRDAISWNT 240
Query: 222 LICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY 281
+I G A G A LF+ V T+T +++ V G++DE + +F + E+
Sbjct: 241 MISGYAQGGGLSQARRLFDESPTRDV----FTWTAMVSGYVQNGMLDEAKTFFDEMPEKN 296
Query: 282 DLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA-------CKEHKQ 334
++ Y M+ + + ++ A E+ +M N+ W + + + K
Sbjct: 297 EVS-----YNAMIAGYVQTKKMDIARELFESMPCR-NISSWNTMITGYGQIGDIAQARKF 350
Query: 335 FDM 337
FDM
Sbjct: 351 FDM 353
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 120/293 (40%), Gaps = 57/293 (19%)
Query: 76 LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF 135
+ + + + WN I + ++G+ A F MP R+ S++AMI+ YL ++ LF
Sbjct: 44 VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLF 103
Query: 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY 195
+M + + + M G Y
Sbjct: 104 DQMPERDLFSWNVMLTG------------------------------------------Y 121
Query: 196 AKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT 255
+ L A +F+LM E++V+SW +L+ G A GY ++A +F+ M + N +++
Sbjct: 122 VRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMP----EKNSISWN 177
Query: 256 GVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRL 315
G+L A VH G ++E F+ ++DL + C++ F + L +A + M +
Sbjct: 178 GLLAAYVHNGRIEEACLLFES-KSDWDL----ISWNCLMGGFVRKKKLGDARWLFDKMPV 232
Query: 316 EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+ I W + ++ + A R+ ++ P D +T + Y N
Sbjct: 233 R-DAISWNTMISGYAQGGGLSQARRLFDES-----PTRDVFTWTAMVSGYVQN 279
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 18/98 (18%)
Query: 258 LTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEP 317
L ++TGL+D G +YF ++EEY + P +HY CM+DL G+ LEE
Sbjct: 771 LLVVIYTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE------------ 818
Query: 318 NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
G+ L A + H ++ E+ + +M P+N G
Sbjct: 819 -----GALLGASRIHGNTELGEKAAQMFFKM-GPQNSG 850
>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 619
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 127/338 (37%), Positives = 208/338 (61%), Gaps = 14/338 (4%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR+LFD +P+R+ ++WNT++ GY+ +G V FE MP+RNV SW+ +I Y+ G +
Sbjct: 238 ARELFDRMPDRDVMSWNTVLSGYATNGEVESFVKLFEEMPVRNVYSWNGLIGGYVRNGLF 297
Query: 129 DPGLKLFREM---ISNEG-------LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
L+ F+ M + EG + P+ T+ AVL+ CS LG L MGK H +
Sbjct: 298 KEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGD--LEMGKWVHVYAES 355
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
++ N + L+DMYAKCG ++ AL VF+ ++ +++I+W +I G A G+ DALSL
Sbjct: 356 IGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINGLAMHGHVADALSL 415
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
FE M+ G +P+ +TF G+L+AC H GLV G +F+ + ++Y + P+I+HYGCMVDL G
Sbjct: 416 FERMKRAGERPDGVTFVGILSACTHMGLVRNGLLHFQSMVDDYSIVPQIEHYGCMVDLLG 475
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG +++A +++R M +EP+ +IW + L AC+ +K +MAE +++ + + +P N G F
Sbjct: 476 RAGLIDKAVDIVRKMPMEPDAVIWAALLGACRMYKNVEMAELALQRLIEL-EPNNPGN-F 533
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
++ ++Y + + R++ M + RK G SVI
Sbjct: 534 VMVSNIYKDLGRSQDVARLKVAMRDTGFRKVPGCSVIG 571
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 146/344 (42%), Gaps = 58/344 (16%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF++MHR + F+ ++KSC N +H + K GF S+ +V +L+H Y
Sbjct: 107 LFARMHRAGASPNCFTFPMVVKSCATANAAKEGEEVHCVVAKRGFKSNTFVGCALIHMYS 166
Query: 63 VTSFGF---ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
+ F A K+F E+ ++N W ++ + ++ AR F+ P R+V W+ ++
Sbjct: 167 LRGGVFVADAYKVFAEMRDKNVFAWTAIVAAHVACRDMVSARRLFDLAPQRDVVLWNVVV 226
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y+ G +LF M D M+ VLSG
Sbjct: 227 SGYIELGDMVAARELFDRMPDR-----DVMSWNTVLSG---------------------- 259
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
YA G ++ + +FE M RNV SW LI G G ++AL F
Sbjct: 260 ---------------YATNGEVESFVKLFEEMPVRNVYSWNGLIGGYVRNGLFKEALECF 304
Query: 240 EMM----QATG-------VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQ 288
+ M + G V PN+ T VLTAC G ++ G K+ + E + +
Sbjct: 305 KRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMG-KWVHVYAESIGYKGNLF 363
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
++D++ K G +E+A +V + ++ ++I W + + H
Sbjct: 364 VGNALIDMYAKCGVIEKALDVFDGLDVK-DIITWNTIINGLAMH 406
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/361 (21%), Positives = 142/361 (39%), Gaps = 60/361 (16%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
Q +HR V D F + +L++C +H + + I+ G + YV S +
Sbjct: 12 QTSKPLHR--VVEDKF--ISLLRTC---GTCVRLHQIQAQIVTHGLEGNDYVTPSFITAC 64
Query: 62 V-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ AR++FD+ + N TWN M +GY+++ + F RM
Sbjct: 65 ARLGGIRRARRVFDKTAQPNGATWNAMFRGYAQANCHLDVVVLFARM------------- 111
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
G +P+ T V+ C+ + G+ H + K
Sbjct: 112 -------------------HRAGASPNCFTFPMVVKSCATANAAK--EGEEVHCVVAKRG 150
Query: 181 WELNEQIATILVDMYAKCG--FLKYALMVFELMEERNVISWTALICGSAHRGYSE--DAL 236
++ N + L+ MY+ G F+ A VF M ++NV +WTA++ +AH + A
Sbjct: 151 FKSNTFVGCALIHMYSLRGGVFVADAYKVFAEMRDKNVFAWTAIV--AAHVACRDMVSAR 208
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF-KMIDEEYDLEPRIQHYGCMVD 295
LF++ V + + V++ + G + R+ F +M D + + + ++
Sbjct: 209 RLFDLAPQRDV----VLWNVVVSGYIELGDMVAARELFDRMPDRD------VMSWNTVLS 258
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
+ G +E ++ M + NV W + + F A K+ L +V+ E
Sbjct: 259 GYATNGEVESFVKLFEEMPVR-NVYSWNGLIGGYVRNGLFKEALECFKRMLVLVEGEGKE 317
Query: 356 G 356
G
Sbjct: 318 G 318
>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
Length = 562
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 125/346 (36%), Positives = 214/346 (61%), Gaps = 6/346 (1%)
Query: 51 VYVATSLLHEYVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL 109
V+ T+++H + + A++LFD +PE++ V+ M+ Y+K G + AR F+ M
Sbjct: 93 VFFWTAIIHGHALRGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEE 152
Query: 110 RNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMG 169
R+ W+ MI Y G + L LFR M+ + P+++T+ +VLS C LG+ L G
Sbjct: 153 RDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKA-KPNEVTVLSVLSACGQLGA--LESG 209
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR 229
+ H +I N + N + T LVDMY+KCG L+ A +VF+ +++++V++W ++I G A
Sbjct: 210 RWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMH 269
Query: 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQH 289
G+S++AL LF+ M G+ P +TF G+L+AC H+G V EG F + +EY +EP+I+H
Sbjct: 270 GFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEH 329
Query: 290 YGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349
YGCMV+L G+AG +E+AYE+++ M +EP+ ++WG+ L AC+ H + + E++++ L +
Sbjct: 330 YGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVE--LLVD 387
Query: 350 KPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ + G + L+ ++Y W+G R+R +M + V+K G S I
Sbjct: 388 QNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSI 433
>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 145/396 (36%), Positives = 216/396 (54%), Gaps = 37/396 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F+ MH+ S+ DS + +LK+ + V +H ++++GFI VY +T+L+H
Sbjct: 74 LYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHL 133
Query: 61 YVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y S A +LFDE MP RN +W+A+I
Sbjct: 134 YCTCLSISDASQLFDE-------------------------------MPERNAVTWNALI 162
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y + + + FR M++ +G P + T+ VLS CSHLG+ GK H FI N
Sbjct: 163 TGYTHNRKFVKAIDAFRGMLA-DGAQPSERTVVVVLSACSHLGAFN--QGKWIHEFIYHN 219
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
LN + T L+DMYAKCG + VFE + E+NV +W LI G A G + AL F
Sbjct: 220 RLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAF 279
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M KP+E+TF GVL AC H GLV EGR F + +++ L+PRI+HYGCMVDL G+
Sbjct: 280 SRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGR 339
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG LEEA E+I++M +EP+ IIW + L AC+ H + E +IK+ + + +P N+G +
Sbjct: 340 AGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLIEL-EP-NNGENYV 397
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y+ +W ++R +M + +RK G S I
Sbjct: 398 LLSNIYSRERRWAEVGKLRGMMSLRGIRKVPGCSSI 433
>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
[Vitis vinifera]
gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
Length = 601
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 138/353 (39%), Positives = 209/353 (59%), Gaps = 10/353 (2%)
Query: 48 ISHVYVATSLLHEYVVTSFGFARKLFDELPERNAVTWNT-----MIKGYSKSGNVCEARD 102
+ V V + L ++ F R + E V W+ ++ YSK G +A
Sbjct: 202 VDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVK 261
Query: 103 FFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLG 162
F MP RN+ SW A+IA Y+ Y LK+F+EMI EG+ P+Q T+ + L+ C+ LG
Sbjct: 262 VFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMII-EGIEPNQSTVTSALTACAQLG 320
Query: 163 SVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTAL 222
S L G+ H ++ +++ LN ++ T LVDMY+KCG + AL+VFE + ++V WTA+
Sbjct: 321 S--LDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAM 378
Query: 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD 282
I G A RG + +L+LF M + V+PN +TF GVL+AC H GLVDEG + F+++ +Y
Sbjct: 379 INGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYR 438
Query: 283 LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVI 342
LEP + HYGCMVDL G+AG LEEA + I +M +EP +WG+ + C HK F++ E +
Sbjct: 439 LEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIHKAFELGEHIG 498
Query: 343 KQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+++ +P + G + L+ +LY+ +KWE A VR+LM + V K+ S I
Sbjct: 499 NHLIKL-QPHHSGR-YILLANLYSRCQKWEAAANVRRLMKGKGVDKSPACSWI 549
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/329 (23%), Positives = 137/329 (41%), Gaps = 40/329 (12%)
Query: 18 SILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELP 77
SIL C F++L + S ++ G H + + LL G+ LFD L
Sbjct: 10 SILCCFHKCGTFDHL---NQTTSILITSGLAHHTFFLSDLLRS-ATKDLGYTLLLFDRLA 65
Query: 78 ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
WNT+++ +S S ++ AY
Sbjct: 66 TPYIFLWNTIVRSFSASSQP------------------QMVLVAY--------------S 93
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
+ N G+ PD+ T +L S L + + IVK + + + LV +A
Sbjct: 94 RLRNHGVIPDRHTFPLLLKAFSKLRNENPF---QFYAHIVKFGLDFDAFVQNSLVSAFAH 150
Query: 198 CGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGV 257
CG++ + +F +++V+SWTALI G G + +AL F M+++GV+ +E+T V
Sbjct: 151 CGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTVVSV 210
Query: 258 LTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEP 317
L A V GR E + + +VD++ K G+ ++A +V M
Sbjct: 211 LCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTR- 269
Query: 318 NVIIWGSFLAACKEHKQFDMAERVIKQAL 346
N++ WG+ +A + ++ A +V ++ +
Sbjct: 270 NLVSWGALIAGYVQCNRYKEALKVFQEMI 298
>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 145/396 (36%), Positives = 216/396 (54%), Gaps = 37/396 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F+ MH+ S+ DS + +LK+ + V +H ++++GFI VY +T+L+H
Sbjct: 74 LYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHL 133
Query: 61 YVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y S A +LFDE MP RN +W+A+I
Sbjct: 134 YCTCLSISDASQLFDE-------------------------------MPERNAVTWNALI 162
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y + + + FR M++ +G P + T+ VLS CSHLG+ GK H FI N
Sbjct: 163 TGYTHNRKFVKAIDAFRGMLA-DGAQPSERTVVVVLSACSHLGAFN--QGKWIHEFIYHN 219
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
LN + T L+DMYAKCG + VFE + E+NV +W LI G A G + AL F
Sbjct: 220 RLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAF 279
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M KP+E+TF GVL AC H GLV EGR F + +++ L+PRI+HYGCMVDL G+
Sbjct: 280 SRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGR 339
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG LEEA E+I++M +EP+ IIW + L AC+ H + E +IK+ + + +P N+G +
Sbjct: 340 AGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLIEL-EP-NNGENYV 397
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y+ +W ++R +M + +RK G S I
Sbjct: 398 LLSNIYSRERRWAEVGKLRGMMNLRGIRKVPGCSSI 433
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 261 bits (667), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 136/386 (35%), Positives = 216/386 (55%), Gaps = 34/386 (8%)
Query: 10 QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFA 69
+VP DS ++ +L +C+ + + +H ++K GF + V
Sbjct: 1245 NNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVG--------------- 1289
Query: 70 RKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYD 129
NT++ Y+K G ++ F+ M ++ SW++MIA Y +G
Sbjct: 1290 ---------------NTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSG 1334
Query: 130 PGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIAT 189
L++F M+ + G+ + +T+ AVL C+H G+ L GK H ++K + E N + T
Sbjct: 1335 EALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGA--LRAGKCIHDQVIKMDLEYNVCVGT 1392
Query: 190 ILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP 249
++DMY KCG ++ A F+ M+E+NV SWTA++ G G +++AL +F M GVKP
Sbjct: 1393 SIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKP 1452
Query: 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEV 309
N +TF VL AC H GLV+EG +F + +YD+EP I+HYGCMVDLFG+AG L EAY +
Sbjct: 1453 NYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNL 1512
Query: 310 IRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNE 369
I+ M+++P+ ++WGS L AC+ HK D+ E + Q L + P+N G + L+ +LY
Sbjct: 1513 IKRMKMKPDFVVWGSLLGACRIHKNVDLGE-IAAQKLFELDPDN-CGYYVLLSNLYADAG 1570
Query: 370 KWEGAERVRKLMLNQNVRKARGSSVI 395
+W ER+R LM N+ + K G S++
Sbjct: 1571 RWADVERMRMLMKNRQLVKPPGFSLV 1596
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 106/309 (34%), Positives = 183/309 (59%), Gaps = 4/309 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+ M Q + +D F+ ++K+CT+F ++ + +H ++K GF V+V +L+
Sbjct: 110 LMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDF 169
Query: 61 YVVTSFG-FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y FA K+F+++ RN V+W T+I G G++ EAR F+ +P +NV SW+AMI
Sbjct: 170 YFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMI 229
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y+ + L+LF+ M + E + P++ T+ +++ C+ +G L +G+ H + +KN
Sbjct: 230 NGYIRNQQPEEALELFKRMQA-ENIFPNEYTMVSLIKACTEMGI--LTLGRGIHDYAIKN 286
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
E+ + T L+DMY+KCG +K A+ VFE M +++ +W ++I G ++AL+LF
Sbjct: 287 CIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLF 346
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M+ VKP+ +TF GVL ACVH V EG YF + + Y + P +HY CM +L+ +
Sbjct: 347 SEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYAR 406
Query: 300 AGFLEEAYE 308
+ L+EA++
Sbjct: 407 SNNLDEAFK 415
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 102/360 (28%), Positives = 169/360 (46%), Gaps = 43/360 (11%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++ FS + + + S +KSC+ +L H GF + ++V+++L
Sbjct: 1127 LRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSAL--- 1183
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
I YSK G + +AR F+ +PLRNV SW++MI
Sbjct: 1184 ---------------------------IDMYSKCGQLKDARALFDEIPLRNVVSWTSMIT 1216
Query: 121 AYLNAGAYDPGLKLFREMISNE-------GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH 173
Y+ D L LF++ + E + D + + +VLS CS + G+ G H
Sbjct: 1217 GYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEG--VH 1274
Query: 174 GFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE 233
GF+VK ++ + + L+D YAKCG + VF+ MEE++ ISW ++I A G S
Sbjct: 1275 GFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSG 1334
Query: 234 DALSLFE-MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC 292
+AL +F M++ GV+ N +T + VL AC H G + G+ + + DLE +
Sbjct: 1335 EALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVI-KMDLEYNVCVGTS 1393
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-VKP 351
++D++ K G +E A + M+ E NV W + +A H + A + + +R VKP
Sbjct: 1394 IIDMYCKCGRVEMAKKTFDRMK-EKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKP 1452
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 96/370 (25%), Positives = 163/370 (44%), Gaps = 80/370 (21%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV-TSFGFARKLFDELPE 78
L +L++C +F +L +H+ I++ G + + L+H Y +A LF ++
Sbjct: 31 LFLLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQN 87
Query: 79 RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM 138
TWN +I+ A +N G + L L++ M
Sbjct: 88 PCTFTWNLIIR------------------------------ANTIN-GLSEQALMLYKNM 116
Query: 139 ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198
+ +G+ D+ T V+ C++ S+ L GK HG ++K + + + L+D Y KC
Sbjct: 117 VC-QGIAADKFTFPFVIKACTNFLSIDL--GKVVHGSLIKYGFSGDVFVQNNLIDFYFKC 173
Query: 199 GFLKYALMVFELMEERNVISWTALICG--------SAHR------------------GY- 231
G ++AL VFE M RNV+SWT +I G A R GY
Sbjct: 174 GHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYI 233
Query: 232 ----SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRI 287
E+AL LF+ MQA + PNE T ++ AC G++ GR +Y ++ I
Sbjct: 234 RNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGI-----HDYAIKNCI 288
Query: 288 Q---HYG-CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIK 343
+ + G ++D++ K G +++A EV TM + ++ W S + + H A +
Sbjct: 289 EIGVYLGTALIDMYSKCGSIKDAIEVFETMPRK-SLPTWNSMITSLGVHGLGQEALNLFS 347
Query: 344 QALRM-VKPE 352
+ R+ VKP+
Sbjct: 348 EMERVNVKPD 357
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 144/332 (43%), Gaps = 56/332 (16%)
Query: 103 FFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLG 162
F++ + NV SW+++IA G L+ F + GL P + + + CS L
Sbjct: 1098 FYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSL-RKLGLIPTRSSFPCTIKSCSAL- 1155
Query: 163 SVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTAL 222
L+ G+ +H +E + +++ L+DMY+KCG LK A +F+ + RNV+SWT++
Sbjct: 1156 -CDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSM 1214
Query: 223 ICGSAHRGYSEDALSLF--------EMMQATGVKPNEMTFTGVLTAC-----------VH 263
I G +++AL LF E+ V + + VL+AC VH
Sbjct: 1215 ITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVH 1274
Query: 264 TGLVDEG------------------------RKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+V +G +K F ++E+ D+ + M+ ++ +
Sbjct: 1275 GFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDIS-----WNSMIAVYAQ 1329
Query: 300 AGFLEEAYEV----IRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
+G EA EV +R + + N + + L AC + + Q ++M E +
Sbjct: 1330 SGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKM-DLEYNV 1388
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVR 387
V T I D+Y + E A++ M +NV+
Sbjct: 1389 CVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVK 1420
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 102/218 (46%), Gaps = 9/218 (4%)
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR 229
+ H I+++ ++ + L+ +Y+ G + YA+++F ++ +W +I +
Sbjct: 44 RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103
Query: 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR-KYFKMIDEEYDLEPRIQ 288
G SE AL L++ M G+ ++ TF V+ AC + +D G+ + +I + + +Q
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQ 163
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348
+ ++D + K G A +V MR+ NV+ W + ++ A R+ +
Sbjct: 164 NN--LIDFYFKCGHTRFALKVFEKMRVR-NVVSWTTVISGLISCGDLQEARRIFDEI--- 217
Query: 349 VKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386
P + +T + + Y N++ E A + K M +N+
Sbjct: 218 --PSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENI 253
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 8/155 (5%)
Query: 204 ALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263
A ++ +++ NV SW ++I A G S +AL F ++ G+ P +F + +C
Sbjct: 1095 ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSA 1154
Query: 264 TGLVDEGRKYFKMIDEE---YDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVI 320
+ GR M ++ + E + ++D++ K G L++A + + L NV+
Sbjct: 1155 LCDLVSGR----MSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLR-NVV 1209
Query: 321 IWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
W S + +++Q D A + K L DG
Sbjct: 1210 SWTSMITGYVQNEQADNALLLFKDFLEEETEVEDG 1244
>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 261 bits (667), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 125/327 (38%), Positives = 204/327 (62%), Gaps = 4/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR+LFD++P R+ ++WN M+ GY+ +G V F+ MP RNV SW+ +I Y+ G +
Sbjct: 226 ARELFDKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLF 285
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L+ F+ M+ + P+ T+ AVLS CS LG+ L MGK H + ++ N +
Sbjct: 286 SETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGA--LDMGKWVHVYAESIGYKGNLFVG 343
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
+L+DMYAKCG ++ A++VF ++ +++ISW +I G A G++ DAL +F+ M++ G +
Sbjct: 344 NVLIDMYAKCGVIENAVVVFNCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEE 403
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+ +TF G+L+AC H GLV +G YFK + + Y + P+I+HYGCMVDL G+AG L++A
Sbjct: 404 PDGVTFVGILSACTHMGLVKDGFLYFKSMVDHYSIVPQIEHYGCMVDLLGRAGLLDQALN 463
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
IR M +EP+ +IW + L AC+ +K ++AE +++ + + +P N F ++ ++Y
Sbjct: 464 FIRKMPIEPDAVIWAALLGACRLYKNVEIAELALQRLIEL-EPNNPAN-FVMVSNIYKDL 521
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
+ E R++ M + RK G SVI
Sbjct: 522 GRSEDVARLKIAMRDTGFRKLPGCSVI 548
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 125/301 (41%), Gaps = 51/301 (16%)
Query: 78 ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
E N I S+ + AR F+++P N A+W+AM YL G + + LF E
Sbjct: 41 EHNDFVAPNFITTCSRFKRIHHARKLFDKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGE 100
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
+ G+ P+ T ++ C L G+ G+ H K+ ++ N +AT L+DMY+K
Sbjct: 101 LNRIAGM-PNCFTFPMIIKSCGKLE--GVREGEEVHCCATKHGFKSNSFVATSLIDMYSK 157
Query: 198 CGFLKYALMVFELMEERNVISWTALI-----CG---SAHR------------------GY 231
G ++ A VF M ERNV+ WTA+I CG S R GY
Sbjct: 158 KGCVEDAYKVFGEMHERNVVVWTAIINGYILCGDVVSGRRLFDLAPERDVVMWSVLISGY 217
Query: 232 SED-----ALSLFEMMQATGVKPNE--MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLE 284
E A LF+ M PN M++ +L G V+ K F + E
Sbjct: 218 IESKNMAAARELFDKM------PNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPER---- 267
Query: 285 PRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE----PNVIIWGSFLAACKEHKQFDMAER 340
+ + ++ + K G E E + M +E PN + L+AC DM +
Sbjct: 268 -NVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKW 326
Query: 341 V 341
V
Sbjct: 327 V 327
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 94/217 (43%), Gaps = 21/217 (9%)
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
IV + E N+ +A + ++ + +A +F+ + + N +W A+ G G+ D
Sbjct: 35 IVTHGLEHNDFVAPNFITTCSRFKRIHHARKLFDKIPQPNTATWNAMFRGYLQNGHHRDT 94
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
+ LF + PN TF ++ +C V EG + ++ + ++D
Sbjct: 95 VVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVREGEE-VHCCATKHGFKSNSFVATSLID 153
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA---CKE----HKQFDMAERVIKQALRM 348
++ K G +E+AY+V M E NV++W + + C + + FD+A
Sbjct: 154 MYSKKGCVEDAYKVFGEMH-ERNVVVWTAIINGYILCGDVVSGRRLFDLA---------- 202
Query: 349 VKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQN 385
PE D +++++ Y ++ A + M N++
Sbjct: 203 --PERDVVMWSVLISGYIESKNMAAARELFDKMPNRD 237
>gi|125552488|gb|EAY98197.1| hypothetical protein OsI_20110 [Oryza sativa Indica Group]
Length = 551
Score = 261 bits (667), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 132/384 (34%), Positives = 223/384 (58%), Gaps = 9/384 (2%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLF 73
D F+ +LK+C L + +H+H+++ G S V SL+ Y A K+F
Sbjct: 118 DRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVF 177
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
DE+ ER+ V+WN +I +++ G + +A F MP + + +W+AM++ Y G Y +
Sbjct: 178 DEMRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVD 237
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
FR M EG PD ++I AVL C+ LG+ L +G+ + + ++ + I L++
Sbjct: 238 AFRSM-QTEGFEPDDVSIVAVLPACAQLGA--LELGRWIYAYCKRHGMLTSTHICNALME 294
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG-VKPNEM 252
MYAKCG + AL +F+ M +++VISW+ +I G A G + +A+ LF M+ G V+PN +
Sbjct: 295 MYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVI 354
Query: 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312
TF G+L+AC + GLVDEG +F +++ Y +EP ++HYGC+VDL G++G + A +++R
Sbjct: 355 TFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRD 414
Query: 313 MRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE-NDGGVFTLICDLYTMNEKW 371
M + + +WGS L+AC+ H D A + A R+V+ E +D G ++ ++Y +W
Sbjct: 415 MPVPADAKVWGSLLSACRSHGDVDTA---VLAAERLVELEPDDVGNLVMLANVYAAARRW 471
Query: 372 EGAERVRKLMLNQNVRKARGSSVI 395
RK + ++++RK G S+I
Sbjct: 472 SDVASTRKAIRSRSMRKTPGCSLI 495
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 90/210 (42%), Gaps = 16/210 (7%)
Query: 173 HGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
HG +V+ + +AT +V + + +A VF + + N+ A+I A
Sbjct: 34 HGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQNHQH 93
Query: 233 EDALSLFEMMQATGVKP-------NEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLE 284
DA++++ M P + T+ +L AC T ++ G++ + ++ D
Sbjct: 94 RDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSS 153
Query: 285 PRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
+Q+ +++++ +AG L A++V MR E +V+ W ++A Q A
Sbjct: 154 AIVQN--SLIEMYTRAGDLALAHKVFDEMR-ERDVVSWNMLISAHARLGQMRKA-----T 205
Query: 345 ALRMVKPENDGGVFTLICDLYTMNEKWEGA 374
AL P+ +T + YT + GA
Sbjct: 206 ALFNSMPDKTIVTWTAMVSGYTTVGDYPGA 235
>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 766
Score = 261 bits (667), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 131/342 (38%), Positives = 207/342 (60%), Gaps = 6/342 (1%)
Query: 55 TSLLHEYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA 113
+++ YV T AR+LF+ +P RN +WNTMI GY + G++ +AR FF+ MP R+
Sbjct: 301 NAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCV 360
Query: 114 SWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH 173
SW+A+IA Y +G Y+ L +F E I +G + ++ T G LS C+ + + L +GK H
Sbjct: 361 SWAAIIAGYAQSGHYEEALNMFVE-IKQDGESLNRATFGCALSTCADIAA--LELGKQIH 417
Query: 174 GFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE 233
G VK + + L+ MY KCG + A FE +EE++V+SW ++ G A G+
Sbjct: 418 GQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGR 477
Query: 234 DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293
AL++FE M+ GVKP+E+T GVL+AC HTGL+D G +YF + ++Y + P +HY CM
Sbjct: 478 QALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCM 537
Query: 294 VDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353
+DL G+AG LEEA ++IR M +P WG+ L A + H ++ E+ + +M +P+N
Sbjct: 538 IDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKM-EPQN 596
Query: 354 DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G++ L+ +LY + +W A+++R M + V+K G S +
Sbjct: 597 S-GMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWV 637
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 135/273 (49%), Gaps = 21/273 (7%)
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
G AR+LFD +PE++ V+WN+++ GY+++G V EAR+ F+ MP +N SW+ ++AAY++
Sbjct: 127 LGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHN 186
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
G + LF E S+ L +G + LG L K V++ N
Sbjct: 187 GRIEEACLLF-ESKSDWDLISWNCLMGGFVRK-KKLGDARWLFDK----MPVRDAISWNT 240
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
I+ YA+ G L A +F+ R+V +WTA++ G G ++A + F+ M
Sbjct: 241 MISG-----YAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMP-- 293
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305
+ NE+++ ++ V T +D R+ F+ + I + M+ +G+ G + +
Sbjct: 294 --EKNEVSYNAMIAGYVQTKKMDIARELFESMPCR-----NISSWNTMITGYGQIGDIAQ 346
Query: 306 AYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
A + M + + + W + +A + ++ A
Sbjct: 347 ARKFFDMMP-QRDCVSWAAIIAGYAQSGHYEEA 378
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 73/303 (24%), Positives = 131/303 (43%), Gaps = 51/303 (16%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A +F+ +P R++V++N MI GY ++ AR+ F++MP R++ SW+ M+ Y+
Sbjct: 68 ALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRL 127
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV-------------------GLLMG 169
+LF M D ++ ++LSG + G V GLL
Sbjct: 128 GDARRLFDLMPEK-----DVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAA 182
Query: 170 KSAHG--------FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTA 221
+G F K++W+L L+ + + L A +F+ M R+ ISW
Sbjct: 183 YVHNGRIEEACLLFESKSDWDLISW--NCLMGGFVRKKKLGDARWLFDKMPVRDAISWNT 240
Query: 222 LICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY 281
+I G A G A LF+ V T+T +++ V G++DE + +F + E+
Sbjct: 241 MISGYAQGGGLSQARRLFDESPTRDV----FTWTAMVSGYVQNGMLDEAKTFFDEMPEKN 296
Query: 282 DLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA-------CKEHKQ 334
++ Y M+ + + ++ A E+ +M N+ W + + + K
Sbjct: 297 EVS-----YNAMIAGYVQTKKMDIARELFESMPCR-NISSWNTMITGYGQIGDIAQARKF 350
Query: 335 FDM 337
FDM
Sbjct: 351 FDM 353
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 120/293 (40%), Gaps = 57/293 (19%)
Query: 76 LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF 135
+ + + + WN I + ++G+ A F MP R+ S++AMI+ YL ++ LF
Sbjct: 44 VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLF 103
Query: 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY 195
+M + + + M G Y
Sbjct: 104 DQMPERDLFSWNVMLTG------------------------------------------Y 121
Query: 196 AKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT 255
+ L A +F+LM E++V+SW +L+ G A GY ++A +F+ M + N +++
Sbjct: 122 VRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMP----EKNSISWN 177
Query: 256 GVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRL 315
G+L A VH G ++E F+ ++DL + C++ F + L +A + M +
Sbjct: 178 GLLAAYVHNGRIEEACLLFES-KSDWDL----ISWNCLMGGFVRKKKLGDARWLFDKMPV 232
Query: 316 EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+ I W + ++ + A R+ ++ P D +T + Y N
Sbjct: 233 R-DAISWNTMISGYAQGGGLSQARRLFDES-----PTRDVFTWTAMVSGYVQN 279
>gi|334188487|ref|NP_200728.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170817|sp|Q9FIF7.1|PP435_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic; Flags: Precursor
gi|9759241|dbj|BAB09765.1| unnamed protein product [Arabidopsis thaliana]
gi|332009773|gb|AED97156.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 544
Score = 261 bits (667), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 139/397 (35%), Positives = 230/397 (57%), Gaps = 12/397 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+ +M SV D++ I +LK+C +L V +H+ +LKLGF S V ++
Sbjct: 112 VSLYHRMIHNSVLPDNYVITSVLKAC----DLKVCREIHAQVLKLGFGSSRSVGLKMMEI 167
Query: 61 YVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + A+K+FDE+P+R+ V MI YS+ G + EA + F+ + +++ W+AMI
Sbjct: 168 YGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMI 227
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ + L+LFREM E ++ ++ T VLS CS LG+ L +G+ H F+
Sbjct: 228 DGLVRNKEMNKALELFREM-QMENVSANEFTAVCVLSACSDLGA--LELGRWVHSFVENQ 284
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
EL+ + L++MY++CG + A VF +M +++VIS+ +I G A G S +A++ F
Sbjct: 285 RMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEF 344
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M G +PN++T +L AC H GL+D G + F + +++EP+I+HYGC+VDL G+
Sbjct: 345 RDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGR 404
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN-DGGVF 358
G LEEAY I + +EP+ I+ G+ L+ACK H ++ E++ K R+ + EN D G +
Sbjct: 405 VGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELGEKIAK---RLFESENPDSGTY 461
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ +LY + KW+ + +R+ M + + K G S I
Sbjct: 462 VLLSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTI 498
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 134/287 (46%), Gaps = 28/287 (9%)
Query: 71 KLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDP 130
K+ +++A +I+ S +V A D F + NV ++AMI ++++G
Sbjct: 51 KIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSAD 110
Query: 131 GLKLFREMISNEGLTPDQMTIGAVLSGCS------------HLG-----SVGLLM----G 169
G+ L+ MI N L PD I +VL C LG SVGL M G
Sbjct: 111 GVSLYHRMIHNSVL-PDNYVITSVLKACDLKVCREIHAQVLKLGFGSSRSVGLKMMEIYG 169
Query: 170 KSAHGFIVKNEW----ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICG 225
KS K + + + AT++++ Y++CGF+K AL +F+ ++ ++ + WTA+I G
Sbjct: 170 KSGELVNAKKMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDG 229
Query: 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP 285
AL LF MQ V NE T VL+AC G ++ GR + E +E
Sbjct: 230 LVRNKEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFV-ENQRMEL 288
Query: 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
+++++ + G + EA V R MR + +VI + + ++ H
Sbjct: 289 SNFVGNALINMYSRCGDINEARRVFRVMR-DKDVISYNTMISGLAMH 334
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 112/259 (43%), Gaps = 43/259 (16%)
Query: 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY 195
R+ SN + T+ +VL C ++ V S H I++ ++Q A ++ ++
Sbjct: 17 RDPDSNTLRLSRRKTLISVLRSCKNIAHV-----PSIHAKIIRT---FHDQDAFVVFELI 68
Query: 196 AKCGFLK---YALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEM 252
C L YA VF + NV +TA+I G G S D +SL+ M V P+
Sbjct: 69 RVCSTLDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNY 128
Query: 253 TFTGVLTAC-------VHTGLVDEG----RKY-FKMID------------EEYDLEPRIQ 288
T VL AC +H ++ G R KM++ + +D P
Sbjct: 129 VITSVLKACDLKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRD 188
Query: 289 HYGC--MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQAL 346
H M++ + + GF++EA E+ + ++++ + + W + + +K+ + A +
Sbjct: 189 HVAATVMINCYSECGFIKEALELFQDVKIK-DTVCWTAMIDGLVRNKEMNKA----LELF 243
Query: 347 RMVKPEN-DGGVFTLICDL 364
R ++ EN FT +C L
Sbjct: 244 REMQMENVSANEFTAVCVL 262
>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
Length = 698
Score = 261 bits (667), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 139/398 (34%), Positives = 227/398 (57%), Gaps = 10/398 (2%)
Query: 1 MQLFSQM-HRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
++LFS+M H S+ D F+I +L +C + N+ + +H++IL+ + V +L+
Sbjct: 175 LKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALIS 234
Query: 60 EYVVT-SFGFARKLFDELPER--NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
Y + S AR++ D+ E N +++ +++GY K G++ AR+ F M R+V +W+
Sbjct: 235 TYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWT 294
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
AMI Y G D + LFR MI+ G P+ T+ AVLS C+ L L GK H
Sbjct: 295 AMIVGYEQNGRNDEAIDLFRSMITC-GPEPNSYTLAAVLSVCASLAC--LDYGKQIHCRA 351
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVF-ELMEERNVISWTALICGSAHRGYSEDA 235
+++ E + ++ ++ MYA+ G +A +F ++ + I+WT++I A G E+A
Sbjct: 352 IRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEA 411
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
+ LFE M GV+P+ +T+ GVL+AC H G V+EG++Y+ I E+ + P + HY CMVD
Sbjct: 412 VGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVD 471
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
L +AG EA E IR M +EP+ I WGS L+AC+ HK ++AE + + L + P N+
Sbjct: 472 LLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAE-LAAEKLLSIDP-NNS 529
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
G ++ I ++Y+ +W A R+ K + VRK G S
Sbjct: 530 GAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFS 567
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/372 (28%), Positives = 176/372 (47%), Gaps = 40/372 (10%)
Query: 17 FSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDE 75
F++ ++L SC V +HS ++KLG S V VA S+L+ Y A +F+
Sbjct: 59 FTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFER 118
Query: 76 LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF 135
+P R+ +WN M+ + G + A FE MP R++ SW+AMIA Y G LKLF
Sbjct: 119 MPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLF 178
Query: 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY 195
M+ + PD+ TI +VLS C++LG+V + GK H +I++ E N Q+ L+ Y
Sbjct: 179 SRMLHESSMAPDEFTITSVLSACANLGNVRI--GKQVHAYILRTEMAYNSQVTNALISTY 236
Query: 196 AKCGFLKYALMV---------------------------------FELMEERNVISWTAL 222
AK G ++ A + F +M R+V++WTA+
Sbjct: 237 AKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAM 296
Query: 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEY 281
I G G +++A+ LF M G +PN T VL+ C +D G++ + + I
Sbjct: 297 IVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLL 356
Query: 282 DLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERV 341
+ + + ++ ++ ++G A + + I W S + A +H Q + A +
Sbjct: 357 EQSSSVSN--AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGL 414
Query: 342 IKQALRM-VKPE 352
++ LR V+P+
Sbjct: 415 FEEMLRAGVEPD 426
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 126/271 (46%), Gaps = 41/271 (15%)
Query: 91 YSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMT 150
++KSG + +AR F MP R+ SW+ M+ AG + +K +M + +G TP Q T
Sbjct: 2 FAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTA-DGFTPTQFT 60
Query: 151 IGAVLSGC--SHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVF 208
+ VLS C + G+V G+ H F+VK +A +++MY KCG + A VF
Sbjct: 61 LTNVLSSCAVTQAGAV----GRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVF 116
Query: 209 EL-------------------------------MEERNVISWTALICGSAHRGYSEDALS 237
E M +R+++SW A+I G G AL
Sbjct: 117 ERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALK 176
Query: 238 LF-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
LF M+ + + P+E T T VL+AC + G V G++ I ++ Q ++
Sbjct: 177 LFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYI-LRTEMAYNSQVTNALIST 235
Query: 297 FGKAGFLEEAYEVI-RTMRLEPNVIIWGSFL 326
+ K+G +E A ++ ++M + NVI + + L
Sbjct: 236 YAKSGSVENARRIMDQSMETDLNVISFTALL 266
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 2/146 (1%)
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
M+AK G L A VF M ER+ +SWT ++ G G +A+ M A G P + T
Sbjct: 1 MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
T VL++C T GRK + + L + +++++GK G E A V M
Sbjct: 61 LTNVLSSCAVTQAGAVGRKVHSFV-VKLGLGSCVPVANSVLNMYGKCGDSETATTVFERM 119
Query: 314 RLEPNVIIWGSFLAACKEHKQFDMAE 339
+ +V W + ++ + D+AE
Sbjct: 120 PVR-SVSSWNAMVSLNTHLGRMDLAE 144
>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
Length = 744
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 135/395 (34%), Positives = 232/395 (58%), Gaps = 7/395 (1%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV- 62
F M + D +++ +L +C +L + LH + + G + + +L+ Y
Sbjct: 227 FKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAK 286
Query: 63 VTSFGFARKLFDELPE-RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
FG A+++FD L +WN +I GY K G+V AR F+ M +R++ ++++M+
Sbjct: 287 CGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTG 346
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+++G L LF M ++ L D T+ +L+ C+ LG+ L G++ H I +
Sbjct: 347 YIHSGQLREALLLFMSMRRHD-LRVDNFTVVNLLTACASLGA--LQQGRALHACIEQRLV 403
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
E + + T L+DMY KCG + A +VF+ M +R+V +WTA+I G A G + AL F
Sbjct: 404 EADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQ 463
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M+ G +PN +++ VLTAC H+ L++EGR YF + Y++ P+I+HYGCM+DL G++G
Sbjct: 464 MRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSG 523
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L+EA ++++TM ++PN +IW S L+AC+ HK D+A+ + L++ +P+ D GV+ +
Sbjct: 524 LLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKL-EPDED-GVYVQL 581
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
++Y + +WE A ++R LM + V+K G S I+
Sbjct: 582 YNIYIDSRQWENASKIRMLMEERQVKKTAGYSSIT 616
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 105/363 (28%), Positives = 179/363 (49%), Gaps = 44/363 (12%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHF----NNLTVIHHLHSHILKLGFISHV-YVATSL 57
LF +M R V D F+ H L C+ ++L + LH+ L+ S +V+ SL
Sbjct: 90 LFRRMRRAGVRPDGFT-FHFLFKCSSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSL 148
Query: 58 LHEYVVTSFGF-ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
+H Y+ AR+ FDE+ ++AV W +I G +K G +C+ + + P+R+V SW+
Sbjct: 149 IHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWT 208
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
++IAAY A + F+ M+S+ G+ PD++T+ AVLS C+ L + L G+S H +
Sbjct: 209 SLIAAYSRANRAREAVGCFKTMLSH-GIAPDEVTVIAVLSACAKLKDLEL--GRSLHLLV 265
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFEL-------------------------- 210
+ +E + L+DMYAKCG +A VF+
Sbjct: 266 EEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVA 325
Query: 211 ------MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
ME R++I++ +++ G H G +AL LF M+ ++ + T +LTAC
Sbjct: 326 RSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASL 385
Query: 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324
G + +GR I++ +E I ++D++ K G ++EA V + M + +V W +
Sbjct: 386 GALQQGRALHACIEQRL-VEADIYLGTALLDMYMKCGRVDEATIVFQRMG-KRDVHTWTA 443
Query: 325 FLA 327
+A
Sbjct: 444 MIA 446
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 82/178 (46%), Gaps = 2/178 (1%)
Query: 168 MGKSAHGFIVKNEWELNEQIA-TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGS 226
+G +A +E + + +A T+L+ AK G L ++ R+VISWT+LI
Sbjct: 155 LGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAY 214
Query: 227 AHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR 286
+ + +A+ F+ M + G+ P+E+T VL+AC ++ GR ++ EE +
Sbjct: 215 SRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRS-LHLLVEEKGMPTS 273
Query: 287 IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
++D++ K G A +V + P W + + +H D+A + +
Sbjct: 274 ENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDE 331
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 111/253 (43%), Gaps = 41/253 (16%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF M R + D+F+++++L +C L LH+ I + + +Y+ T+LL Y+
Sbjct: 359 LFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYM 418
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
K G V EA F+RM R+V +W+AMIA
Sbjct: 419 ------------------------------KCGRVDEATIVFQRMGKRDVHTWTAMIAGL 448
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI-VKNEW 181
G L+ F +M +G P+ ++ AVL+ CSH L+ + F ++ +
Sbjct: 449 AFNGMGKAALEHFYQM-RCDGFQPNSVSYIAVLTACSH----SCLLNEGRLYFDEMRILY 503
Query: 182 ELNEQIA--TILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSEDALSL 238
++ QI ++D+ + G L A+ + + M + N + W +++ SA R + L+
Sbjct: 504 NIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASIL--SACRVHKHIDLAQ 561
Query: 239 FEMMQATGVKPNE 251
++P+E
Sbjct: 562 CAAEHLLKLEPDE 574
>gi|413937828|gb|AFW72379.1| hypothetical protein ZEAMMB73_412000 [Zea mays]
Length = 471
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 223/391 (57%), Gaps = 8/391 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVY--VATSLL 58
+ LF +M R PS + + ++ ++ ++ +HSH K GF + Y + TSLL
Sbjct: 43 LALFLRMLRHGRPSPNQFVYPLVLRAACAVDVRIVRSIHSHACKSGFCGYEYDVIRTSLL 102
Query: 59 HEYVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
Y + ARKLFD L ER+ V+W ++ GY+++G + +A FERM R+VA+W+A
Sbjct: 103 DCYSRHAMMADARKLFDGLTERSVVSWTALVSGYARAGKIGDAIMLFERMTERDVAAWNA 162
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
+I + + +F M+ GL P+ TI VLS C HLG L +GK H
Sbjct: 163 IITGCSQNRLFAEAVGIFGRMVGT-GLRPNATTISCVLSACGHLGM--LKIGKLIHCCAW 219
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
+ + L+DMY KCG L+ A +F + +R++ +W +LI A G+S+ A+S
Sbjct: 220 RTCVGFGSSVLNGLIDMYGKCGNLEGATWIFYEVSDRSLTAWNSLINCLALHGHSKCAIS 279
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
+F M+ GV+P+ +TF G+L AC H G VDEG KYF+++ E+ +EP I+HYGC+++L
Sbjct: 280 VFNEMRGEGVEPDVITFVGLLNACTHGGFVDEGIKYFELMQHEHGIEPEIEHYGCIINLL 339
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
G+AG ++A VI MR+E + +IWGS L AC+ H+ ++AE I++ L + N+
Sbjct: 340 GRAGRFQDALNVISNMRIESDEVIWGSLLNACRVHRNVELAELAIRKLLEL--DPNNANY 397
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRK 388
++ ++Y+ WE + RK M +N+ K
Sbjct: 398 VVMLANVYSEGGLWEEVRKARKFMEEENIGK 428
>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
Length = 799
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 135/395 (34%), Positives = 232/395 (58%), Gaps = 7/395 (1%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV- 62
F M + D +++ +L +C +L + LH + + G + + +L+ Y
Sbjct: 227 FKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAK 286
Query: 63 VTSFGFARKLFDELPE-RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
FG A+++FD L +WN +I GY K G+V AR F+ M +R++ ++++M+
Sbjct: 287 CGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTG 346
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+++G L LF M ++ L D T+ +L+ C+ LG+ L G++ H I +
Sbjct: 347 YIHSGQLREALLLFMSMRRHD-LRVDNFTVVNLLTACASLGA--LQQGRALHACIEQRLV 403
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
E + + T L+DMY KCG + A +VF+ M +R+V +WTA+I G A G + AL F
Sbjct: 404 EADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQ 463
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M+ G +PN +++ VLTAC H+ L++EGR YF + Y++ P+I+HYGCM+DL G++G
Sbjct: 464 MRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSG 523
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L+EA ++++TM ++PN +IW S L+AC+ HK D+A+ + L++ +P+ D GV+ +
Sbjct: 524 LLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKL-EPDED-GVYVQL 581
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
++Y + +WE A ++R LM + V+K G S I+
Sbjct: 582 YNIYIDSRQWENASKIRMLMEERQVKKTAGYSSIT 616
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 105/363 (28%), Positives = 179/363 (49%), Gaps = 44/363 (12%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHF----NNLTVIHHLHSHILKLGFISHV-YVATSL 57
LF +M R V D F+ H L C+ ++L + LH+ L+ S +V+ SL
Sbjct: 90 LFRRMRRAGVRPDGFT-FHFLFKCSSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSL 148
Query: 58 LHEYVVTSFGF-ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
+H Y+ AR+ FDE+ ++AV W +I G +K G +C+ + + P+R+V SW+
Sbjct: 149 IHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWT 208
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
++IAAY A + F+ M+S+ G+ PD++T+ AVLS C+ L + L G+S H +
Sbjct: 209 SLIAAYSRANRAREAVGCFKTMLSH-GIAPDEVTVIAVLSACAKLKDLEL--GRSLHLLV 265
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFEL-------------------------- 210
+ +E + L+DMYAKCG +A VF+
Sbjct: 266 EEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVA 325
Query: 211 ------MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
ME R++I++ +++ G H G +AL LF M+ ++ + T +LTAC
Sbjct: 326 RSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASL 385
Query: 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324
G + +GR I++ +E I ++D++ K G ++EA V + M + +V W +
Sbjct: 386 GALQQGRALHACIEQRL-VEADIYLGTALLDMYMKCGRVDEATIVFQRMG-KRDVHTWTA 443
Query: 325 FLA 327
+A
Sbjct: 444 MIA 446
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 82/178 (46%), Gaps = 2/178 (1%)
Query: 168 MGKSAHGFIVKNEWELNEQIA-TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGS 226
+G +A +E + + +A T+L+ AK G L ++ R+VISWT+LI
Sbjct: 155 LGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAY 214
Query: 227 AHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR 286
+ + +A+ F+ M + G+ P+E+T VL+AC ++ GR ++ EE +
Sbjct: 215 SRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLV-EEKGMPTS 273
Query: 287 IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
++D++ K G A +V + P W + + +H D+A + +
Sbjct: 274 ENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDE 331
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 111/253 (43%), Gaps = 41/253 (16%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF M R + D+F+++++L +C L LH+ I + + +Y+ T+LL Y+
Sbjct: 359 LFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYM 418
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
K G V EA F+RM R+V +W+AMIA
Sbjct: 419 ------------------------------KCGRVDEATIVFQRMGKRDVHTWTAMIAGL 448
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI-VKNEW 181
G L+ F +M +G P+ ++ AVL+ CSH L+ + F ++ +
Sbjct: 449 AFNGMGKAALEHFYQM-RCDGFQPNSVSYIAVLTACSH----SCLLNEGRLYFDEMRILY 503
Query: 182 ELNEQIA--TILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSEDALSL 238
++ QI ++D+ + G L A+ + + M + N + W +++ SA R + L+
Sbjct: 504 NIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASIL--SACRVHKHIDLAQ 561
Query: 239 FEMMQATGVKPNE 251
++P+E
Sbjct: 562 CAAEHLLKLEPDE 574
>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 804
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 139/398 (34%), Positives = 227/398 (57%), Gaps = 10/398 (2%)
Query: 1 MQLFSQM-HRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
++LFS+M H S+ D F+I +L +C + N+ + +H++IL+ + V +L+
Sbjct: 281 LKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALIS 340
Query: 60 EYVVT-SFGFARKLFDELPER--NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
Y + S AR++ D+ E N +++ +++GY K G++ AR+ F M R+V +W+
Sbjct: 341 TYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWT 400
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
AMI Y G D + LFR MI+ G P+ T+ AVLS C+ L L GK H
Sbjct: 401 AMIVGYEQNGRNDEAIDLFRSMITC-GPEPNSYTLAAVLSVCASLAC--LDYGKQIHCRA 457
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVF-ELMEERNVISWTALICGSAHRGYSEDA 235
+++ E + ++ ++ MYA+ G +A +F ++ + I+WT++I A G E+A
Sbjct: 458 IRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEA 517
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
+ LFE M GV+P+ +T+ GVL+AC H G V+EG++Y+ I E+ + P + HY CMVD
Sbjct: 518 VGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVD 577
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
L +AG EA E IR M +EP+ I WGS L+AC+ HK ++AE + + L + P N+
Sbjct: 578 LLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAE-LAAEKLLSIDP-NNS 635
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
G ++ I ++Y+ +W A R+ K + VRK G S
Sbjct: 636 GAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFS 673
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/372 (28%), Positives = 176/372 (47%), Gaps = 40/372 (10%)
Query: 17 FSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDE 75
F++ ++L SC V +HS ++KLG S V VA S+L+ Y A +F+
Sbjct: 165 FTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFER 224
Query: 76 LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF 135
+P R+ +WN M+ + G + A FE MP R++ SW+AMIA Y G LKLF
Sbjct: 225 MPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLF 284
Query: 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY 195
M+ + PD+ TI +VLS C++LG+V + GK H +I++ E N Q+ L+ Y
Sbjct: 285 SRMLHESSMAPDEFTITSVLSACANLGNVRI--GKQVHAYILRTEMAYNSQVTNALISTY 342
Query: 196 AKCGFLKYALMV---------------------------------FELMEERNVISWTAL 222
AK G ++ A + F +M R+V++WTA+
Sbjct: 343 AKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAM 402
Query: 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEY 281
I G G +++A+ LF M G +PN T VL+ C +D G++ + + I
Sbjct: 403 IVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLL 462
Query: 282 DLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERV 341
+ + + ++ ++ ++G A + + I W S + A +H Q + A +
Sbjct: 463 EQSSSVSN--AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGL 520
Query: 342 IKQALRM-VKPE 352
++ LR V+P+
Sbjct: 521 FEEMLRAGVEPD 532
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 103/355 (29%), Positives = 169/355 (47%), Gaps = 50/355 (14%)
Query: 14 SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGF----- 68
SD ++ +L+ C N +H+ +K G ++ Y+ +LL Y T+ G
Sbjct: 26 SDHYA--RLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRD 83
Query: 69 ARKLFDELP--ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAG 126
AR+LFDE+P RN TWN+++ ++KSG + +AR F MP R+ SW+ M+ AG
Sbjct: 84 ARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAG 143
Query: 127 AYDPGLKLFREMISNEGLTPDQMTIGAVLSGC--SHLGSVGLLMGKSAHGFIVKNEWELN 184
+ +K +M + +G TP Q T+ VLS C + G+V G+ H F+VK
Sbjct: 144 RFGEAIKTLLDMTA-DGFTPTQFTLTNVLSSCAVTQAGAV----GRKVHSFVVKLGLGSC 198
Query: 185 EQIATILVDMYAKCGFLKYALMVFEL-------------------------------MEE 213
+A +++MY KCG + A VFE M +
Sbjct: 199 VPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPD 258
Query: 214 RNVISWTALICGSAHRGYSEDALSLF-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK 272
R+++SW A+I G G AL LF M+ + + P+E T T VL+AC + G V G++
Sbjct: 259 RSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQ 318
Query: 273 YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI-RTMRLEPNVIIWGSFL 326
I ++ Q ++ + K+G +E A ++ ++M + NVI + + L
Sbjct: 319 VHAYI-LRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALL 372
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 2/153 (1%)
Query: 191 LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250
L+ M+AK G L A VF M ER+ +SWT ++ G G +A+ M A G P
Sbjct: 104 LLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPT 163
Query: 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI 310
+ T T VL++C T GRK + + L + +++++GK G E A V
Sbjct: 164 QFTLTNVLSSCAVTQAGAVGRKVHSFV-VKLGLGSCVPVANSVLNMYGKCGDSETATTVF 222
Query: 311 RTMRLEPNVIIWGSFLAACKEHKQFDMAERVIK 343
M + +V W + ++ + D+AE + +
Sbjct: 223 ERMPVR-SVSSWNAMVSLNTHLGRMDLAESLFE 254
>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
Length = 539
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 145/404 (35%), Positives = 235/404 (58%), Gaps = 19/404 (4%)
Query: 1 MQLFSQMHRQS--VPSDSFSILHILKSCTHFNNLTVIH--HLHSHILKLGFISHVYVATS 56
M++F M R S +P + ++ + + K+C N L V+ + H +K+G S+++V +
Sbjct: 16 MRIFLSMVRVSGFLP-NRYTFVFVFKACG--NGLGVLEGEQIRVHAIKIGLESNLFVTNA 72
Query: 57 LLHEYVVTSFGF---ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA 113
++ Y ++G AR++FD +++ +WN MI GY SG + A++ F+ M R+V
Sbjct: 73 MIRMY--ANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVV 130
Query: 114 SWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH 173
SW+ +IA Y+ G + L LF EM+ G P++ T+ + L+ C++L V L G+ H
Sbjct: 131 SWTTIIAGYVQVGCFKEALDLFHEMLQT-GPPPNEFTLASALAACANL--VALDQGRWIH 187
Query: 174 GFIVKNEWELNEQIATILVDMYAKCGFLKYALMVF--ELMEERNVISWTALICGSAHRGY 231
+I K+E ++NE++ L+DMYAKCG + +A VF E + V W A+I G A G
Sbjct: 188 VYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGK 247
Query: 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG 291
S++A+ LFE M+ V PN++TF +L AC H LV+EGR YFK + Y +EP I+HYG
Sbjct: 248 SKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYG 307
Query: 292 CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351
CMVDL G++G L+EA E + M + P+ IWG+ L AC+ HK + +R+ K +
Sbjct: 308 CMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKEL--D 365
Query: 352 ENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ G L+ +LY+ + +W+ A+ VR+ + +K G S I
Sbjct: 366 SDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSI 409
>gi|222631730|gb|EEE63862.1| hypothetical protein OsJ_18686 [Oryza sativa Japonica Group]
Length = 551
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 132/384 (34%), Positives = 223/384 (58%), Gaps = 9/384 (2%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLF 73
D F+ +LK+C L + +H+H+++ G S V SL+ Y A K+F
Sbjct: 118 DRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVF 177
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
DE+ ER+ V+WN +I +++ G + +A F MP + + +W+AM++ Y G Y +
Sbjct: 178 DEMRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVD 237
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
FR M EG PD ++I AVL C+ LG+ L +G+ + + ++ + I L++
Sbjct: 238 AFRSM-QTEGFEPDDVSIVAVLPACAQLGT--LELGRWIYAYCKRHGMLTSTHICNALME 294
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG-VKPNEM 252
MYAKCG + AL +F+ M +++VISW+ +I G A G + +A+ LF M+ G V+PN +
Sbjct: 295 MYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVI 354
Query: 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312
TF G+L+AC + GLVDEG +F +++ Y +EP ++HYGC+VDL G++G + A +++R
Sbjct: 355 TFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRD 414
Query: 313 MRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE-NDGGVFTLICDLYTMNEKW 371
M + + +WGS L+AC+ H D A + A R+V+ E +D G ++ ++Y +W
Sbjct: 415 MPVPADAKVWGSLLSACRSHGDVDTA---VLAAERLVELEPDDVGNLVMLANVYAAARRW 471
Query: 372 EGAERVRKLMLNQNVRKARGSSVI 395
RK + ++++RK G S+I
Sbjct: 472 SDVASTRKAIRSRSMRKTPGCSLI 495
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 90/210 (42%), Gaps = 16/210 (7%)
Query: 173 HGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
HG +V+ + +AT +V + + +A VF + + N+ A+I A
Sbjct: 34 HGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQNHQH 93
Query: 233 EDALSLFEMMQATGVKP-------NEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLE 284
DA++++ M P + T+ +L AC T ++ G++ + ++ D
Sbjct: 94 RDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSS 153
Query: 285 PRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
+Q+ +++++ +AG L A++V MR E +V+ W ++A Q A
Sbjct: 154 AIVQN--SLIEMYTRAGDLALAHKVFDEMR-ERDVVSWNMLISAHARLGQMRKA-----T 205
Query: 345 ALRMVKPENDGGVFTLICDLYTMNEKWEGA 374
AL P+ +T + YT + GA
Sbjct: 206 ALFNSMPDKTIVTWTAMVSGYTTVGDYPGA 235
>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 624
Score = 261 bits (666), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 145/404 (35%), Positives = 235/404 (58%), Gaps = 19/404 (4%)
Query: 1 MQLFSQMHRQS--VPSDSFSILHILKSCTHFNNLTVIH--HLHSHILKLGFISHVYVATS 56
M++F M R S +P + ++ + + K+C N L V+ + H +K+G S+++V +
Sbjct: 101 MRIFLSMVRVSGFLP-NRYTFVFVFKACG--NGLGVLEGEQIRVHAIKIGLESNLFVTNA 157
Query: 57 LLHEYVVTSFGF---ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA 113
++ Y ++G AR++FD +++ +WN MI GY SG + A++ F+ M R+V
Sbjct: 158 MIRMY--ANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVV 215
Query: 114 SWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH 173
SW+ +IA Y+ G + L LF EM+ G P++ T+ + L+ C++L V L G+ H
Sbjct: 216 SWTTIIAGYVQVGCFKEALDLFHEMLQT-GPPPNEFTLASALAACANL--VALDQGRWIH 272
Query: 174 GFIVKNEWELNEQIATILVDMYAKCGFLKYALMVF--ELMEERNVISWTALICGSAHRGY 231
+I K+E ++NE++ L+DMYAKCG + +A VF E + V W A+I G A G
Sbjct: 273 VYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGK 332
Query: 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG 291
S++A+ LFE M+ V PN++TF +L AC H LV+EGR YFK + Y +EP I+HYG
Sbjct: 333 SKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYG 392
Query: 292 CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351
CMVDL G++G L+EA E + M + P+ IWG+ L AC+ HK + +R+ K +
Sbjct: 393 CMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKEL--D 450
Query: 352 ENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ G L+ +LY+ + +W+ A+ VR+ + +K G S I
Sbjct: 451 SDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSI 494
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/380 (23%), Positives = 148/380 (38%), Gaps = 104/380 (27%)
Query: 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDELPER 79
L+SC N I H+H++ G I H A LL + +SFG +A +LFD++P+
Sbjct: 22 LESCKSMNQ---IKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKP 78
Query: 80 NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI 139
+ +NTMIK + A + +++ +++F M+
Sbjct: 79 DVFIYNTMIKAH-----------------------------AVIPTSSHN-SMRIFLSMV 108
Query: 140 SNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG 199
G P++ T V C + +G+L G+ +K E N + ++ MYA G
Sbjct: 109 RVSGFLPNRYTFVFVFKACGN--GLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWG 166
Query: 200 FLKYALMVFEL-------------------------------MEERNVISWTALICGSAH 228
+ A VF+ M ER+V+SWT +I G
Sbjct: 167 LVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQ 226
Query: 229 RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMID---------- 278
G ++AL LF M TG PNE T L AC + +D+GR ID
Sbjct: 227 VGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERL 286
Query: 279 ----------------------EEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE 316
+EY L+ ++ + M+ + G +EA ++ M++E
Sbjct: 287 LASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVE 346
Query: 317 ---PNVIIWGSFLAACKEHK 333
PN + + + L AC K
Sbjct: 347 KVSPNKVTFVALLNACSHGK 366
>gi|297724167|ref|NP_001174447.1| Os05g0439300 [Oryza sativa Japonica Group]
gi|46981301|gb|AAT07619.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
gi|215769333|dbj|BAH01562.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255676403|dbj|BAH93175.1| Os05g0439300 [Oryza sativa Japonica Group]
Length = 551
Score = 261 bits (666), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 132/384 (34%), Positives = 223/384 (58%), Gaps = 9/384 (2%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLF 73
D F+ +LK+C L + +H+H+++ G S V SL+ Y A K+F
Sbjct: 118 DRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVF 177
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
DE+ ER+ V+WN +I +++ G + +A F MP + + +W+AM++ Y G Y +
Sbjct: 178 DEMRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVD 237
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
FR M EG PD ++I AVL C+ LG+ L +G+ + + ++ + I L++
Sbjct: 238 AFRSM-QTEGFEPDDVSIVAVLPACAQLGA--LELGRWIYAYCKRHGMLTSTHICNALME 294
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG-VKPNEM 252
MYAKCG + AL +F+ M +++VISW+ +I G A G + +A+ LF M+ G V+PN +
Sbjct: 295 MYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVI 354
Query: 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312
TF G+L+AC + GLVDEG +F +++ Y +EP ++HYGC+VDL G++G + A +++R
Sbjct: 355 TFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRD 414
Query: 313 MRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE-NDGGVFTLICDLYTMNEKW 371
M + + +WGS L+AC+ H D A + A R+V+ E +D G ++ ++Y +W
Sbjct: 415 MPVPADAKVWGSLLSACRSHGDVDTA---VLAAERLVELEPDDVGNLVMLANVYAAARRW 471
Query: 372 EGAERVRKLMLNQNVRKARGSSVI 395
RK + ++++RK G S+I
Sbjct: 472 SDVASTRKAIRSRSMRKTPGCSLI 495
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 90/210 (42%), Gaps = 16/210 (7%)
Query: 173 HGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
HG +V+ + +AT +V + + +A VF + + N+ A+I A
Sbjct: 34 HGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQNHQH 93
Query: 233 EDALSLFEMMQATGVKP-------NEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLE 284
DA++++ M P + T+ +L AC T ++ G++ + ++ D
Sbjct: 94 RDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSS 153
Query: 285 PRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
+Q+ +++++ +AG L A++V MR E +V+ W ++A Q A
Sbjct: 154 AIVQN--SLIEMYTRAGDLALAHKVFDEMR-ERDVVSWNMLISAHARLGQMRKA-----T 205
Query: 345 ALRMVKPENDGGVFTLICDLYTMNEKWEGA 374
AL P+ +T + YT + GA
Sbjct: 206 ALFNSMPDKTIVTWTAMVSGYTTVGDYPGA 235
>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
Length = 682
Score = 261 bits (666), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 142/395 (35%), Positives = 221/395 (55%), Gaps = 35/395 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F ++ + DSFS++ +L +C +L + +I + G + +V+VAT+L
Sbjct: 194 IDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATAL--- 250
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ Y K GN+ AR F+ M +N+ SWS+MI
Sbjct: 251 ---------------------------VDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQ 283
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y + G L LF +M+ NEGL PD + VL C+ LG+ L +G A I NE
Sbjct: 284 GYASNGLPKEALDLFFKML-NEGLKPDCYAMVGVLCSCARLGA--LELGDWASNLINGNE 340
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ N + T L+DMYAKCG + A VF M +++ + W A I G A G+ +DAL LF
Sbjct: 341 FLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFG 400
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ +G+KP+ TF G+L AC H GLV+EGR+YF ++ + L P I+HYGCMVDL G+A
Sbjct: 401 QMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRA 460
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G L+EA+++I++M +E N I+WG+ L C+ H+ + E V+K+ L ++P + G + L
Sbjct: 461 GCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEVVLKK-LIALEPWHSGN-YVL 518
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y + KWE A ++R +M + V+K G S I
Sbjct: 519 LSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSWI 553
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 161/328 (49%), Gaps = 35/328 (10%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++++ M ++ + DSF+ +LK+C + + +HS ++K G + +V SL
Sbjct: 93 IEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVKISL--- 149
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
I Y+K G + A F+ +P +N ASW+A I+
Sbjct: 150 ---------------------------INLYTKCGFIDNAFKVFDDIPDKNFASWTATIS 182
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y+ G + +FR ++ GL PD ++ VLS C G L G+ +I +N
Sbjct: 183 GYVGVGKCREAIDMFRRLLE-MGLRPDSFSLVEVLSACKRTGD--LRSGEWIDEYITENG 239
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
N +AT LVD Y KCG ++ A VF+ M E+N++SW+++I G A G ++AL LF
Sbjct: 240 MVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFF 299
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M G+KP+ GVL +C G ++ G +I+ L+ + ++D++ K
Sbjct: 300 KMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTA-LIDMYAKC 358
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
G ++ A+EV R MR + + ++W + ++
Sbjct: 359 GRMDRAWEVFRGMR-KKDRVVWNAAISG 385
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 136/306 (44%), Gaps = 51/306 (16%)
Query: 29 FNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFAR-----KLFDELPERNAVT 83
F+ L + H+H+ +L+LG Y LL++ + SF F ++ D+ E N
Sbjct: 20 FSCLKHLKHIHAALLRLGLDEDTY----LLNKVLRFSFNFGNTNYSFRILDQTKEPNIFL 75
Query: 84 WNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEG 143
+NTMI+G + E+ + + M EG
Sbjct: 76 FNTMIRGLVLNDCFQESIEIYHSM--------------------------------RKEG 103
Query: 144 LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKY 203
L+PD T VL C+ + + +G H +VK E + + L+++Y KCGF+
Sbjct: 104 LSPDSFTFPFVLKACARV--LDSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDN 161
Query: 204 ALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263
A VF+ + ++N SWTA I G G +A+ +F + G++P+ + VL+AC
Sbjct: 162 AFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKR 221
Query: 264 TGLVDEGRKYFKMIDE---EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVI 320
TG + G + IDE E + + +VD +GK G +E A V M LE N++
Sbjct: 222 TGDLRSG----EWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGM-LEKNIV 276
Query: 321 IWGSFL 326
W S +
Sbjct: 277 SWSSMI 282
>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
Length = 804
Score = 261 bits (666), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 139/398 (34%), Positives = 227/398 (57%), Gaps = 10/398 (2%)
Query: 1 MQLFSQM-HRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
++LFS+M H S+ D F+I +L +C + N+ + +H++IL+ + V +L+
Sbjct: 281 LKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALIS 340
Query: 60 EYVVT-SFGFARKLFDELPER--NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
Y + S AR++ D+ E N +++ +++GY K G++ AR+ F M R+V +W+
Sbjct: 341 TYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWT 400
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
AMI Y G D + LFR MI+ G P+ T+ AVLS C+ L L GK H
Sbjct: 401 AMIVGYEQNGRNDEAIDLFRSMITC-GPEPNSYTLAAVLSVCASLAC--LDYGKQIHCRA 457
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVF-ELMEERNVISWTALICGSAHRGYSEDA 235
+++ E + ++ ++ MYA+ G +A +F ++ + I+WT++I A G E+A
Sbjct: 458 IRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEA 517
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
+ LFE M GV+P+ +T+ GVL+AC H G V+EG++Y+ I E+ + P + HY CMVD
Sbjct: 518 VGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVD 577
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
L +AG EA E IR M +EP+ I WGS L+AC+ HK ++AE + + L + P N+
Sbjct: 578 LLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAE-LAAEKLLSIDP-NNS 635
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
G ++ I ++Y+ +W A R+ K + VRK G S
Sbjct: 636 GAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFS 673
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/372 (28%), Positives = 176/372 (47%), Gaps = 40/372 (10%)
Query: 17 FSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDE 75
F++ ++L SC V +HS ++KLG S V VA S+L+ Y A +F+
Sbjct: 165 FTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFER 224
Query: 76 LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF 135
+P R+ +WN M+ + G + A FE MP R++ SW+AMIA Y G LKLF
Sbjct: 225 MPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLF 284
Query: 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY 195
M+ + PD+ TI +VLS C++LG+V + GK H +I++ E N Q+ L+ Y
Sbjct: 285 SRMLHESSMAPDEFTITSVLSACANLGNVRI--GKQVHAYILRTEMAYNSQVTNALISTY 342
Query: 196 AKCGFLKYALMV---------------------------------FELMEERNVISWTAL 222
AK G ++ A + F +M R+V++WTA+
Sbjct: 343 AKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAM 402
Query: 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEY 281
I G G +++A+ LF M G +PN T VL+ C +D G++ + + I
Sbjct: 403 IVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLL 462
Query: 282 DLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERV 341
+ + + ++ ++ ++G A + + I W S + A +H Q + A +
Sbjct: 463 ERSSSVSN--AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGL 520
Query: 342 IKQALRM-VKPE 352
++ LR V+P+
Sbjct: 521 FEEMLRAGVEPD 532
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 104/355 (29%), Positives = 170/355 (47%), Gaps = 50/355 (14%)
Query: 14 SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGF----- 68
SD ++ +L+ C N +H+ +K G ++ Y+ +LL Y T+ G
Sbjct: 26 SDHYA--RLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRD 83
Query: 69 ARKLFDELP--ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAG 126
AR+LFDE+P RN TWN+++ ++KSG + +AR F MP R+ SW+ M+ AG
Sbjct: 84 ARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAG 143
Query: 127 AYDPGLKLFREMISNEGLTPDQMTIGAVLSGC--SHLGSVGLLMGKSAHGFIVKNEWELN 184
+ +K +M + +G TP Q T+ VLS C + G+V G+ H F+VK
Sbjct: 144 RFGEAIKTLLDMTA-DGFTPTQFTLTNVLSSCAVTQAGAV----GRKVHSFVVKLGLGSC 198
Query: 185 EQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE---- 240
+A +++MY KCG + A VFE M R+V SW A++ + H G + A SLFE
Sbjct: 199 VPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPG 258
Query: 241 ----------------------------MMQATGVKPNEMTFTGVLTACVHTGLVDEGRK 272
M+ + + P+E T T VL+AC + G V G++
Sbjct: 259 RSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQ 318
Query: 273 YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI-RTMRLEPNVIIWGSFL 326
I ++ Q ++ + K+G +E A ++ ++M + NVI + + L
Sbjct: 319 VHAYI-LRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALL 372
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 2/153 (1%)
Query: 191 LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250
L+ M+AK G L A VF M ER+ +SWT ++ G G +A+ M A G P
Sbjct: 104 LLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPT 163
Query: 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI 310
+ T T VL++C T GRK + + L + +++++GK G E A V
Sbjct: 164 QFTLTNVLSSCAVTQAGAVGRKVHSFV-VKLGLGSCVPVANSVLNMYGKCGDAETASTVF 222
Query: 311 RTMRLEPNVIIWGSFLAACKEHKQFDMAERVIK 343
M + +V W + ++ + D+AE + +
Sbjct: 223 ERMPVR-SVSSWNAMVSLNTHLGRMDLAESLFE 254
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 261 bits (666), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 136/386 (35%), Positives = 216/386 (55%), Gaps = 34/386 (8%)
Query: 10 QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFA 69
+VP DS ++ +L +C+ + + +H ++K GF + V
Sbjct: 2118 NNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVG--------------- 2162
Query: 70 RKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYD 129
NT++ Y+K G ++ F+ M ++ SW++MIA Y +G
Sbjct: 2163 ---------------NTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSG 2207
Query: 130 PGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIAT 189
L++F M+ + G+ + +T+ AVL C+H G+ L GK H ++K + E N + T
Sbjct: 2208 EALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGA--LRAGKCIHDQVIKMDLEYNVCVGT 2265
Query: 190 ILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP 249
++DMY KCG ++ A F+ M+E+NV SWTA++ G G +++AL +F M GVKP
Sbjct: 2266 SIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKP 2325
Query: 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEV 309
N +TF VL AC H GLV+EG +F + +YD+EP I+HYGCMVDLFG+AG L EAY +
Sbjct: 2326 NYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNL 2385
Query: 310 IRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNE 369
I+ M+++P+ ++WGS L AC+ HK D+ E + Q L + P+N G + L+ +LY
Sbjct: 2386 IKRMKMKPDFVVWGSLLGACRIHKNVDLGE-IAAQKLFELDPDN-CGYYVLLSNLYADAG 2443
Query: 370 KWEGAERVRKLMLNQNVRKARGSSVI 395
+W ER+R LM N+ + K G S++
Sbjct: 2444 RWADVERMRMLMKNRQLVKPPGFSLV 2469
Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 106/312 (33%), Positives = 184/312 (58%), Gaps = 4/312 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+ M Q + +D F+ ++K+CT+F ++ + +H ++K GF V+V +L+
Sbjct: 110 LMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDF 169
Query: 61 YVVTSFG-FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y FA K+F+++ RN V+W T+I G G++ EAR F+ +P +NV SW+AMI
Sbjct: 170 YFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMI 229
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y+ + L+LF+ M + E + P++ T+ +++ C+ +G L +G+ H + +KN
Sbjct: 230 NGYIRNQQPEEALELFKRMQA-ENIFPNEYTMVSLIKACTEMGI--LTLGRGIHDYAIKN 286
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
E+ + T L+DMY+KCG +K A+ VFE M +++ +W ++I G ++AL+LF
Sbjct: 287 CIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLF 346
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M+ VKP+ +TF GVL ACVH V EG YF + + Y + P +HY CM +L+ +
Sbjct: 347 SEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYAR 406
Query: 300 AGFLEEAYEVIR 311
+ L+EA++ +
Sbjct: 407 SNNLDEAFKSTK 418
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 150/295 (50%), Gaps = 22/295 (7%)
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
FGF LF + +I YSK G + +AR F+ +PLRNV SW++MI Y+
Sbjct: 2044 FGFETDLF---------VSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQN 2094
Query: 126 GAYDPGLKLFREMISNE-------GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
D L LF++ + E + D + + +VLS CS + G+ G HGF+VK
Sbjct: 2095 EQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEG--VHGFVVK 2152
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
++ + + L+D YAKCG + VF+ MEE++ ISW ++I A G S +AL +
Sbjct: 2153 KGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEV 2212
Query: 239 FE-MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
F M++ GV+ N +T + VL AC H G + G+ + + DLE + ++D++
Sbjct: 2213 FHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVI-KMDLEYNVCVGTSIIDMY 2271
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-VKP 351
K G +E A + M+ E NV W + +A H + A + + +R VKP
Sbjct: 2272 CKCGRVEMAKKTFDRMK-EKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKP 2325
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 96/370 (25%), Positives = 163/370 (44%), Gaps = 80/370 (21%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV-TSFGFARKLFDELPE 78
L +L++C +F +L +H+ I++ G + + L+H Y +A LF ++
Sbjct: 31 LFLLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQN 87
Query: 79 RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM 138
TWN +I+ A +N G + L L++ M
Sbjct: 88 PCTFTWNLIIR------------------------------ANTIN-GLSEQALMLYKNM 116
Query: 139 ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198
+ +G+ D+ T V+ C++ S+ L GK HG ++K + + + L+D Y KC
Sbjct: 117 VC-QGIAADKFTFPFVIKACTNFLSIDL--GKVVHGSLIKYGFSGDVFVQNNLIDFYFKC 173
Query: 199 GFLKYALMVFELMEERNVISWTALICG--------SAHR------------------GY- 231
G ++AL VFE M RNV+SWT +I G A R GY
Sbjct: 174 GHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYI 233
Query: 232 ----SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRI 287
E+AL LF+ MQA + PNE T ++ AC G++ GR +Y ++ I
Sbjct: 234 RNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGI-----HDYAIKNCI 288
Query: 288 Q---HYG-CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIK 343
+ + G ++D++ K G +++A EV TM + ++ W S + + H A +
Sbjct: 289 EIGVYLGTALIDMYSKCGSIKDAIEVFETMPRK-SLPTWNSMITSLGVHGLGQEALNLFS 347
Query: 344 QALRM-VKPE 352
+ R+ VKP+
Sbjct: 348 EMERVNVKPD 357
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 85/357 (23%), Positives = 156/357 (43%), Gaps = 58/357 (16%)
Query: 80 NAVTWNTMIKGYS--KSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
+ +T+N+++ G + + A F++ + NV SW+++IA G L+ F
Sbjct: 1946 DGITYNSILFGVPSGREDHSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSS 2005
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
+ GL P + + + CS L L+ G+ +H +E + +++ L+DMY+K
Sbjct: 2006 L-RKLGLIPTRSSFPCTIKSCSAL--CDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSK 2062
Query: 198 CGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF--------EMMQATGVKP 249
CG LK A +F+ + RNV+SWT++I G +++AL LF E+ V
Sbjct: 2063 CGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPL 2122
Query: 250 NEMTFTGVLTAC-----------VHTGLVDEG------------------------RKYF 274
+ + VL+AC VH +V +G +K F
Sbjct: 2123 DSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVF 2182
Query: 275 KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEV----IRTMRLEPNVIIWGSFLAACK 330
++E+ D+ + M+ ++ ++G EA EV +R + + N + + L AC
Sbjct: 2183 DWMEEKDDIS-----WNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACA 2237
Query: 331 EHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVR 387
+ + Q ++M E + V T I D+Y + E A++ M +NV+
Sbjct: 2238 HAGALRAGKCIHDQVIKM-DLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVK 2293
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 102/218 (46%), Gaps = 9/218 (4%)
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR 229
+ H I+++ ++ + L+ +Y+ G + YA+++F ++ +W +I +
Sbjct: 44 RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103
Query: 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR-KYFKMIDEEYDLEPRIQ 288
G SE AL L++ M G+ ++ TF V+ AC + +D G+ + +I + + +Q
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQ 163
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348
+ ++D + K G A +V MR+ NV+ W + ++ A R+ +
Sbjct: 164 NN--LIDFYFKCGHTRFALKVFEKMRVR-NVVSWTTVISGLISCGDLQEARRIFDEI--- 217
Query: 349 VKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386
P + +T + + Y N++ E A + K M +N+
Sbjct: 218 --PSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENI 253
>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
Length = 644
Score = 261 bits (666), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 132/327 (40%), Positives = 201/327 (61%), Gaps = 5/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A KLF +PERN ++WN +I G++++G V EA F+ MP NV SW+AMIA Y G
Sbjct: 310 AFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQA 369
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ LKLF +M + + P+ T VL C+ L L G AH ++++ ++ + +
Sbjct: 370 ENALKLFGQMQMVD-MKPNTETFAIVLPACAALAV--LEQGNEAHEVVIRSGFQSDVLVG 426
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
LV MYAKCG ++ A VF+ M +++ S +A+I G A G S+++L LFE MQ TG+K
Sbjct: 427 NTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLK 486
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+ +TF GVL+AC H GLVDEGR+YF ++ Y + P ++HYGCM+DL G+AG +EA +
Sbjct: 487 PDRVTFVGVLSACCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEAND 546
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+I M ++P+ +WGS L+AC+ H D+ E+V Q L + P+N + L+ ++Y
Sbjct: 547 LINKMPIKPDADMWGSLLSACRTHNNIDLGEKV-AQHLIALNPQNPAP-YVLLSNIYAAA 604
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
+W+ VR M ++ V+K G S I
Sbjct: 605 GRWDDIGSVRNRMKDRKVKKKLGCSWI 631
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 96/313 (30%), Positives = 162/313 (51%), Gaps = 16/313 (5%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
F +M + + F+ IL +CT +L V+ H I+K GF S+V+V L+ Y
Sbjct: 153 FFYEMQDVGIQPNHFTFASILPACT---DLEVLGEFHDEIVKGGFESNVFVGNGLVDMYA 209
Query: 63 VTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
FAR+LFD++P+R+ V+WN MI GY ++G + +A F+ +P R+V +W+ M+A
Sbjct: 210 KRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAG 269
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y G + ++LF +M ++ + M G V +G S + L I N
Sbjct: 270 YAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNG-SVKEAFKLFQIMPERNVISWNA- 327
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
++ +A+ G ++ AL +F+ M E NV+SW A+I G + G +E+AL LF
Sbjct: 328 ---------VISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQ 378
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
MQ +KPN TF VL AC ++++G + +++ + + +V ++ K G
Sbjct: 379 MQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRS-GFQSDVLVGNTLVGMYAKCG 437
Query: 302 FLEEAYEVIRTMR 314
+E+A +V MR
Sbjct: 438 SIEDARKVFDRMR 450
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 149/304 (49%), Gaps = 40/304 (13%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
N ++ Y K G++ EAR F+ MP++NV SW+AMIAAY L F EM + G+
Sbjct: 104 NKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEM-QDVGI 162
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
P+ T ++L C+ L +G H IVK +E N + LVDMYAK G +++A
Sbjct: 163 QPNHFTFASILPACTDLEVLGEF-----HDEIVKGGFESNVFVGNGLVDMYAKRGCIEFA 217
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV----------------- 247
+F+ M +R+V+SW A+I G G EDAL LF+ + V
Sbjct: 218 RELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAGYAQCGDVE 277
Query: 248 ----------KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
+ N +++ ++ V G V E K F+++ E + + ++ F
Sbjct: 278 NAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPER-----NVISWNAVISGF 332
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
+ G +EEA ++ +TM E NV+ W + +A ++ Q + A ++ Q ++MV + +
Sbjct: 333 AQNGQVEEALKLFKTMP-ECNVVSWNAMIAGYSQNGQAENALKLFGQ-MQMVDMKPNTET 390
Query: 358 FTLI 361
F ++
Sbjct: 391 FAIV 394
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 106/214 (49%), Gaps = 9/214 (4%)
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
++ + G L + ++M+ N G+ P T ++L GC L + L K H
Sbjct: 33 DGLVKSLCKQGRLREALHILQDMVEN-GIWPHSSTYDSLLQGC--LNAKSLPDAKLLHAH 89
Query: 176 IVKNEWELNE-QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
+++ ++E + + LV +Y K G L A VF+ M +NV+SWTA+I A + ++
Sbjct: 90 MIQTQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQE 149
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
AL F MQ G++PN TF +L AC T L G + +++ + E + +V
Sbjct: 150 ALGFFYEMQDVGIQPNHFTFASILPAC--TDLEVLGEFHDEIVKGGF--ESNVFVGNGLV 205
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
D++ K G +E A E+ M + +V+ W + +A
Sbjct: 206 DMYAKRGCIEFARELFDKMP-QRDVVSWNAMIAG 238
>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
Length = 660
Score = 260 bits (665), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 141/396 (35%), Positives = 227/396 (57%), Gaps = 36/396 (9%)
Query: 1 MQLFSQMHR-QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
++LF +M + ++V + +++++L +C +L ++ +H +I + GF HV + T L+
Sbjct: 171 VRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMD 230
Query: 60 EYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y K G V ARD F++ +N+ SW+ MI
Sbjct: 231 VYC------------------------------KCGCVQLARDLFDKAQEKNLFSWNIMI 260
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
++ Y+ L LFREM +G+ D++T+ ++L C+HLG+ L +GK H +I K
Sbjct: 261 NGHVEDSNYEEALLLFREM-QTKGIKGDKVTMASLLLACTHLGA--LELGKWLHAYIKKQ 317
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+++ + T LVDMYAKCG ++ A+ VF M E++V++WTALI G A G +E+AL F
Sbjct: 318 RIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYF 377
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+ M GVKP+ +TF GVL AC H G VDEG +F + + Y ++P I+HYG +VD+ G+
Sbjct: 378 DEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGR 437
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG + EA E+I++M + P+ + G L AC+ H + AER KQ L + P + G +
Sbjct: 438 AGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLE-IDPYH-SGTYV 495
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y ++KWE A+R R+LM + +RK G S I
Sbjct: 496 LLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQI 531
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 89/332 (26%), Positives = 158/332 (47%), Gaps = 40/332 (12%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+ +M Q + D ++ + KSC N + +H H KLGF S Y
Sbjct: 75 FYQEMMVQGLIPDRYTFPSLFKSC---RNSSEGKQIHCHSTKLGFASDTYAQ-------- 123
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
NT++ YS G + AR F++M + V SW+ MI +
Sbjct: 124 ----------------------NTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVH 161
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+ ++LF M+ +E + P+++T+ VL+ C+ + L M K H +I ++ +
Sbjct: 162 AQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACAR--ARDLAMVKRIHEYIDEHGFG 219
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
+ + T+L+D+Y KCG ++ A +F+ +E+N+ SW +I G E+AL LF M
Sbjct: 220 RHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREM 279
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
Q G+K +++T +L AC H G ++ G K+ ++ ++ + +VD++ K G
Sbjct: 280 QTKGIKGDKVTMASLLLACTHLGALELG-KWLHAYIKKQRIDVDVALGTALVDMYAKCGS 338
Query: 303 LEEAYEVIRTMRLEPNVIIWGSF---LAACKE 331
+E A +V M E +V+ W + LA C +
Sbjct: 339 IETAIQVFHEMP-EKDVMTWTALILGLAMCGQ 369
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 135/311 (43%), Gaps = 43/311 (13%)
Query: 32 LTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDELPERNAVTWNTMI 88
++ + +H+ +L+ G + A+ ++ + G +AR +F ++P + T N++I
Sbjct: 1 MSQLKQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSII 60
Query: 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ 148
+G + EA F++ M + +GL PD+
Sbjct: 61 RGCTDKNLHQEALLFYQEMMV--------------------------------QGLIPDR 88
Query: 149 MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVF 208
T ++ C + GK H K + + L++MY+ CG L A VF
Sbjct: 89 YTFPSLFKSCRNSSE-----GKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVF 143
Query: 209 ELMEERNVISWTALICGSAHRGYSEDALSLFE-MMQATGVKPNEMTFTGVLTACVHTGLV 267
+ ME++ V+SW +I A +A+ LF+ MM++ VKPNE+T VLTAC +
Sbjct: 144 DKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDL 203
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
++ + ID E+ + ++D++ K G ++ A ++ + E N+ W +
Sbjct: 204 AMVKRIHEYID-EHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQ-EKNLFSWNIMIN 261
Query: 328 ACKEHKQFDMA 338
E ++ A
Sbjct: 262 GHVEDSNYEEA 272
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 67/155 (43%), Gaps = 8/155 (5%)
Query: 199 GFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL 258
G L+YA +VF + + ++I G + ++AL ++ M G+ P+ TF +
Sbjct: 36 GSLQYARLVFSQIPNPTSYTCNSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLF 95
Query: 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPN 318
+C ++ EG++ + +++++ G L A +V M +
Sbjct: 96 KSCRNSS---EGKQ-IHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKME-DKT 150
Query: 319 VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353
V+ W + + H Q+D ++ RM+K EN
Sbjct: 151 VVSWATMIGV---HAQWDQPNEAVRLFDRMMKSEN 182
>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 642
Score = 260 bits (665), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 129/330 (39%), Positives = 197/330 (59%), Gaps = 11/330 (3%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A+ FD +P +N ++W M+ GY K+G+ AR F++MP++N+ +WS MI Y G
Sbjct: 279 AKDFFDRMPNKNVISWGIMLDGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQP 338
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI---VKNEWELNE 185
L+LF E + + PD+ I ++S CS LG + +A I V +
Sbjct: 339 LKALELF-ERFKEQDIKPDETFILGIISACSQLGII-----DAAESIIHNYVGPSLLSDL 392
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
++ T L+DMYAKCG ++ AL +FE+ ++++ ++ +I A+ G DA+ LF+ MQ
Sbjct: 393 RVFTSLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRA 452
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305
+KP+ +TF GVLTAC H GLVDEGRKYFK + EE+ ++P +HY C+VDL G+ G LEE
Sbjct: 453 NIKPDSVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEE 512
Query: 306 AYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365
AY +IR M + P+ ++WG+ LAAC+ H +AE V L ++P+N G + L+ ++Y
Sbjct: 513 AYNLIRNMPIAPHSVVWGALLAACRVHCNVQLAE-VAAAELFKIEPDNSGN-YILLSNIY 570
Query: 366 TMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+W +VR + VRK RGSS I
Sbjct: 571 AAAGRWGSVAKVRAKIREHRVRKNRGSSWI 600
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 99/354 (27%), Positives = 169/354 (47%), Gaps = 29/354 (8%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF QM R+ + +F+I +LK+ ++ +LK GF + V S+L ++
Sbjct: 88 LFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFVLKYGFAFDLIVQNSVLDLFM 147
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
AR+ FDE+ E++ V+WN MI GY + V AR FF+RMP RNV SW++MI
Sbjct: 148 RCRKVDTARQAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICG 207
Query: 122 YLNAGAYDPGLKLF-----REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH--- 173
Y+ AG LF +++ S + M IG ++ G + + S +
Sbjct: 208 YVKAGDMAEAQVLFDSMPVKDLASWNVMVSGYMDIGDCVNARIIFGKMPIHDTGSWNIMI 267
Query: 174 -GFIVKNEWE---------LNEQIAT--ILVDMYAKCGFLKYALMVFELMEERNVISWTA 221
GF E E N+ + + I++D Y K G A +F+ M +N+++W+
Sbjct: 268 SGFCKAGELESAKDFFDRMPNKNVISWGIMLDGYIKNGDTNGARCLFDQMPMKNLVTWST 327
Query: 222 LICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY 281
+I G A G AL LFE + +KP+E G+++AC G++D I Y
Sbjct: 328 MIGGYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAES----IIHNY 383
Query: 282 ---DLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
L ++ + ++D++ K G +E+A ++ M +++ + + +AA H
Sbjct: 384 VGPSLLSDLRVFTSLIDMYAKCGSIEKALQMFE-MAHPKDLLCYSTMIAALANH 436
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 79/341 (23%), Positives = 132/341 (38%), Gaps = 80/341 (23%)
Query: 19 ILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPE 78
ILHI+ +C +L IH LL E V S F
Sbjct: 5 ILHIIHNCKTLKSLKSIH------------------ARLLIESSVASSEF---------- 36
Query: 79 RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM 138
N +++ YS+ G A F+ + N W+++I Y+ YD LF +M
Sbjct: 37 ----VINKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQM 92
Query: 139 ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198
E ++ TI +VL + L G++ +GF++K + + + ++D++ +C
Sbjct: 93 -RREPISVLNFTISSVLKALARL--TRFKGGQAVYGFVLKYGFAFDLIVQNSVLDLFMRC 149
Query: 199 ----------------GFLKYALMV---------------FELMEERNVISWTALICGSA 227
+ + +M+ F+ M ERNV+SWT++ICG
Sbjct: 150 RKVDTARQAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYV 209
Query: 228 HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA--CVHTGLVDEGRKYFKMIDEEYDLEP 285
G +A LF+ M + + +G + CV+ ++ + KM +
Sbjct: 210 KAGDMAEAQVLFDSMPVKDLASWNVMVSGYMDIGDCVNARII-----FGKMPIHD----- 259
Query: 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
+ M+ F KAG LE A + M NVI WG L
Sbjct: 260 -TGSWNIMISGFCKAGELESAKDFFDRMP-NKNVISWGIML 298
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 31/164 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF + Q + D IL I+ +C+ +LG I A S++H
Sbjct: 342 LELFERFKEQDIKPDETFILGIISACS----------------QLGIID---AAESIIHN 382
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
YV S ++F ++I Y+K G++ +A FE +++ +S MIA
Sbjct: 383 YVGPSLLSDLRVF-----------TSLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIA 431
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV 164
A N G + LF +M + PD +T VL+ C+H G V
Sbjct: 432 ALANHGLGRDAIFLFDKM-QRANIKPDSVTFLGVLTACNHGGLV 474
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 82/188 (43%), Gaps = 8/188 (4%)
Query: 154 VLSGCSHLGSVGLLMGKSAHG-FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME 212
++ C L S+ KS H ++++ +E + L+ +Y++ G YA VF+ +
Sbjct: 8 IIHNCKTLKSL-----KSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEIT 62
Query: 213 ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK 272
+ N WT+LI G ++A SLF M+ + T + VL A G+
Sbjct: 63 QPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQA 122
Query: 273 YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
+ + +Y + ++DLF + ++ A + M E +++ W ++ +
Sbjct: 123 VYGFV-LKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEM-CEKDIVSWNMMISGYGNN 180
Query: 333 KQFDMAER 340
+ D+A +
Sbjct: 181 DRVDIARK 188
>gi|226531155|ref|NP_001148193.1| methyltransferase small domain [Zea mays]
gi|195616632|gb|ACG30146.1| methyltransferase small domain [Zea mays]
Length = 656
Score = 260 bits (665), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 136/400 (34%), Positives = 229/400 (57%), Gaps = 11/400 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSIL--HILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL 58
M+ + QM + V ++ + +L ++K+C ++ +T LH+ ILK GF + +V +L+
Sbjct: 261 MKAYVQMVGE-VGANDYEVLLVDLMKACARYSAVTEGQQLHTVILKNGFDALAFVQATLV 319
Query: 59 HEYVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
H Y G A+ F + + +WN ++ ++G + EAR+ F+ MP R+ SWS
Sbjct: 320 HFYGCCGLIGLAQMTFRLSDKSHTASWNALLAALLRNGLIREARELFDDMPERDTVSWST 379
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MI+ Y+ G D LKLF M+ N + P+++T+ + LS + G+ L GK H +I+
Sbjct: 380 MISGYVQTGRSDMALKLFYSML-NTSIEPNEVTLASALSAIADSGT--LDQGKWIHDYIM 436
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER--NVISWTALICGSAHRGYSEDA 235
+L + +++ L+DMYAKCG + A+ F + ++ +V W A+IC A GY+ +
Sbjct: 437 NRPVQLTDNLSSGLIDMYAKCGSIADAVQFFNRVNDKFSSVSPWNAMICSLAIHGYAHMS 496
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
L LF +Q T +KPN +TF GVL+AC H G V +G+ YF+ + EY ++P I+HYGCMVD
Sbjct: 497 LDLFSQLQRTSIKPNSITFIGVLSACCHAGTVTKGKYYFESMTREYGIQPTIKHYGCMVD 556
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
L G+AG+LEEA +++ M ++P+V+IWGS L+A + + ER ++ ++ + G
Sbjct: 557 LLGRAGYLEEAEQLVSMMPMKPDVVIWGSILSASRAQGNVALGERAAEELAKL--DQTHG 614
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y W VRK + + N+ + G S I
Sbjct: 615 ASKIALSNIYADAGHWTNVSVVRKELQDANLERLTGRSGI 654
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/404 (24%), Positives = 173/404 (42%), Gaps = 41/404 (10%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+F M ++V + ++ + + + +H L+ V VAT+L+H Y
Sbjct: 131 VFRSMLSENVVPNEATLAGAITAFARCGAPATVGMIHGFALQRALDGFVIVATNLVHAYA 190
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
V AR LFD + RN VTWN M+ GY K+ + A + F R+P R+ SW +I
Sbjct: 191 GVLELCSARALFDGMTHRNTVTWNVMLNGYVKAKMIDMAAEVFWRIPERDEVSWLTLIDG 250
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ A +K + +M+ G ++ + ++ C+ +V G+ H I+KN +
Sbjct: 251 YICADLISDAMKAYVQMVGEVGANDYEVLLVDLMKACARYSAV--TEGQQLHTVILKNGF 308
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFEL------------------------------- 210
+ + LV Y CG + A M F L
Sbjct: 309 DALAFVQATLVHFYGCCGLIGLAQMTFRLSDKSHTASWNALLAALLRNGLIREARELFDD 368
Query: 211 MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
M ER+ +SW+ +I G G S+ AL LF M T ++PNE+T L+A +G +D+G
Sbjct: 369 MPERDTVSWSTMISGYVQTGRSDMALKLFYSMLNTSIEPNEVTLASALSAIADSGTLDQG 428
Query: 271 RKYFKMI-DEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE-PNVIIWGSFLAA 328
+ I + L + ++D++ K G + +A + + + +V W + + +
Sbjct: 429 KWIHDYIMNRPVQLTDNLS--SGLIDMYAKCGSIADAVQFFNRVNDKFSSVSPWNAMICS 486
Query: 329 CKEHKQFDMAERVIKQALRM-VKPENDG--GVFTLICDLYTMNE 369
H M+ + Q R +KP + GV + C T+ +
Sbjct: 487 LAIHGYAHMSLDLFSQLQRTSIKPNSITFIGVLSACCHAGTVTK 530
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 90/390 (23%), Positives = 171/390 (43%), Gaps = 51/390 (13%)
Query: 37 HLHSHILKLGFI-SHVYVATSLLHEY--VVTSFGFARKLFDELPE--RNAVTWNTMIKGY 91
LH+ K G + S+V+V S+L Y + +S A +LFDE P R+A N+++
Sbjct: 27 QLHALAAKSGLLASNVFVRNSVLSSYSRLPSSLASALQLFDETPPPLRDATARNSILAAL 86
Query: 92 SKSGNVCEARDFFERMPL--RNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQM 149
+++G++ A+ E MP R+ S++ ++ A+ AG + +FR M+S E + P++
Sbjct: 87 TRAGHLDRAQGLLEEMPRIHRDAVSYTTLVTAFARAGHAARAVAVFRSMLS-ENVVPNEA 145
Query: 150 TIGAVLSG---CSHLGSVGLLMG----KSAHGFIV---------KNEWEL---------- 183
T+ ++ C +VG++ G ++ GF++ EL
Sbjct: 146 TLAGAITAFARCGAPATVGMIHGFALQRALDGFVIVATNLVHAYAGVLELCSARALFDGM 205
Query: 184 ---NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF- 239
N ++++ Y K + A VF + ER+ +SW LI G DA+ +
Sbjct: 206 THRNTVTWNVMLNGYVKAKMIDMAAEVFWRIPERDEVSWLTLIDGYICADLISDAMKAYV 265
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI-DEEYDLEPRIQHYGCMVDLFG 298
+M+ G E+ ++ AC V EG++ +I +D +Q +V +G
Sbjct: 266 QMVGEVGANDYEVLLVDLMKACARYSAVTEGQQLHTVILKNGFDALAFVQ--ATLVHFYG 323
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVK--PENDGG 356
G + A R + + + W + LAA + +I++A + PE D
Sbjct: 324 CCGLIGLAQMTFR-LSDKSHTASWNALLAAL-------LRNGLIREARELFDDMPERDTV 375
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNV 386
++ + Y + + A ++ MLN ++
Sbjct: 376 SWSTMISGYVQTGRSDMALKLFYSMLNTSI 405
>gi|125555946|gb|EAZ01552.1| hypothetical protein OsI_23585 [Oryza sativa Indica Group]
Length = 530
Score = 260 bits (665), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 139/395 (35%), Positives = 233/395 (58%), Gaps = 8/395 (2%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L QM R V D +++ + +C+ +L++ +H ++ + F ++ VA +LL Y
Sbjct: 137 LSEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNV-FGFNLPVANALLDMYT 195
Query: 63 VTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
A KLF+++P RN ++W ++ GY +G + +AR F + +++ W+AMI A
Sbjct: 196 KNDCLEEAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINA 255
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
+ G ++ L LFR+M + + PD+ T+ +L+ C++LG+ L G+ H + + +
Sbjct: 256 CVQHGCFEEALTLFRDM-QMQRVEPDRFTVVTLLTCCANLGA--LDQGEWIHQYAEQRKM 312
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+++ + T L+DMY+KCG ++ +L VF M+ R+ +WTA+ICG A G + AL LF+
Sbjct: 313 KIDAVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQD 372
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
MQ + VKP+ +TF GVL+AC H GLVDEGRK F + E Y +EPR++HY C+V+L G+AG
Sbjct: 373 MQRSKVKPDGVTFIGVLSACCHGGLVDEGRKQFHAMREVYQIEPRVEHYSCLVNLLGRAG 432
Query: 302 FLEEAYEVIRTMRLEPNVI-IWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
L+EA +I + + + + ++G+ L ACK H +M+ER+ K+ D V L
Sbjct: 433 LLDEAERLIGDVPINKDAMPLFGALLTACKAHGNVEMSERLTKRICEQDSQITD--VNLL 490
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y +WE RVR M + V+K G S+I
Sbjct: 491 MSNVYATASRWEDVIRVRGKMAHPTVKKTAGCSLI 525
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 98/398 (24%), Positives = 167/398 (41%), Gaps = 74/398 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
M ++ + + + +DSF+ +L++ H+ +K GF Y +SL+
Sbjct: 34 MAVYYDLRARGLVADSFTYPFVLRAVGVLKLSVEGRKAHAAAIKTGFRWDAYTGSSLMEM 93
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
Y TM+ G V AR F+ MP R + W+ M+
Sbjct: 94 Y------------------------TML------GRVDIARKVFDEMPSRALVLWNMMVR 123
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y+ G Y + L +M G+TPD++T+ ++ CS + L +G+ H ++ N
Sbjct: 124 CYIRCGRYSAAVALSEQM-ERSGVTPDRVTLVTAVTACSR--ARDLSLGRRIHVYM-DNV 179
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICG--------------- 225
+ N +A L+DMY K L+ A+ +FE M RN+ISWT L+ G
Sbjct: 180 FGFNLPVANALLDMYTKNDCLEEAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFN 239
Query: 226 ----------------SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
G E+AL+LF MQ V+P+ T +LT C + G +D+
Sbjct: 240 QCKEKDLILWTAMINACVQHGCFEEALTLFRDMQMQRVEPDRFTVVTLLTCCANLGALDQ 299
Query: 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAAC 329
G ++ E+ ++ ++D++ K G +E++ EV M+ + W + +
Sbjct: 300 G-EWIHQYAEQRKMKIDAVLGTALIDMYSKCGHIEKSLEVFWRMQ-GRDATAWTAIICGL 357
Query: 330 KEHKQFDMAERVIKQALR-MVKPENDG----GVFTLIC 362
+ Q A + + R VKP DG GV + C
Sbjct: 358 ATNGQAGRALELFQDMQRSKVKP--DGVTFIGVLSACC 393
>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
gi|194706828|gb|ACF87498.1| unknown [Zea mays]
Length = 570
Score = 260 bits (664), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 140/394 (35%), Positives = 223/394 (56%), Gaps = 7/394 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF +M RQ D F++ +L +C+ NL +H +L G + + +L+ Y
Sbjct: 133 LFGEMRRQGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVDLILGGALVDMYS 192
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
AR+ F+ +P ++ V+W +M+ +K G+V AR +F+ MP RN SW+ MI+
Sbjct: 193 KCGDLCMARRCFEMMPIKSVVSWTSMLCAQTKHGSVDAARCWFDHMPERNTVSWNTMISC 252
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ G Y L L+++M S+ G PD+ T+ VLS C +G L +GK H +I N
Sbjct: 253 YVQRGQYHEALDLYKQMQSH-GPAPDEATLVPVLSACGRIGD--LTVGKMVHLYIRDNIH 309
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ + L+DMYAKCG + A+ +F M RNV+SW +I G A G + DA++ F
Sbjct: 310 NPDISLINSLLDMYAKCGQVDTAIRLFREMCNRNVVSWNVIIGGLAMHGRALDAITFFRS 369
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M P+ +TF +L++C H GL++ G+ YF+ + Y+++ ++HY CMVDL G+ G
Sbjct: 370 M-VRNTSPDGITFVALLSSCSHGGLLETGQHYFESMRHVYNVKHEVEHYACMVDLLGRRG 428
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
LE+A +I+ M ++P+V++WG+ L AC+ H + ++VIKQ L + GG+F LI
Sbjct: 429 HLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGKQVIKQLLEL--EGISGGLFVLI 486
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+L +WE +R+RKLM + RK G S I
Sbjct: 487 SNLLYETNQWEDMKRLRKLMKERGTRKDMGVSSI 520
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 101/383 (26%), Positives = 166/383 (43%), Gaps = 66/383 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L M R+ V + F++ ++K+CT +H LKLGF+ V+VA +LLH
Sbjct: 30 LRLHRCMLRRGVLPNEFTLPFVVKACTRAQAWDNALAVHGVALKLGFVGQVFVANALLHS 89
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
Y + +G++ ++R FF+ M RNV SW++MI
Sbjct: 90 Y------------------------------ASAGSLGDSRRFFDEMAGRNVVSWNSMIG 119
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y AG LF EM +G D+ T+ ++L CS G+ L G+ H ++ +
Sbjct: 120 GYAQAGDTREACALFGEM-RRQGFLGDEFTLASLLLACSQEGN--LEFGRLVHCLMLVSG 176
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSA------------- 227
++ + LVDMY+KCG L A FE+M ++V+SWT+++C
Sbjct: 177 SPVDLILGGALVDMYSKCGDLCMARRCFEMMPIKSVVSWTSMLCAQTKHGSVDAARCWFD 236
Query: 228 ------------------HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
RG +AL L++ MQ+ G P+E T VL+AC G +
Sbjct: 237 HMPERNTVSWNTMISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVPVLSACGRIGDLTV 296
Query: 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAAC 329
G+ I + P I ++D++ K G ++ A + R M NV+ W +
Sbjct: 297 GKMVHLYIRDNIH-NPDISLINSLLDMYAKCGQVDTAIRLFREM-CNRNVVSWNVIIGGL 354
Query: 330 KEHKQFDMAERVIKQALRMVKPE 352
H + A + +R P+
Sbjct: 355 AMHGRALDAITFFRSMVRNTSPD 377
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 107/226 (47%), Gaps = 7/226 (3%)
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
++ + AY N+ L+L R M+ G+ P++ T+ V+ C+ + + + HG
Sbjct: 13 YNTITRAYCNSDCPREALRLHRCML-RRGVLPNEFTLPFVVKACTRAQAWDNAL--AVHG 69
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
+K + +A L+ YA G L + F+ M RNV+SW ++I G A G + +
Sbjct: 70 VALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGGYAQAGDTRE 129
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR-KYFKMIDEEYDLEPRIQHYGCM 293
A +LF M+ G +E T +L AC G ++ GR + M+ ++ + G +
Sbjct: 130 ACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVDLILG--GAL 187
Query: 294 VDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAE 339
VD++ K G L A M ++ +V+ W S L A +H D A
Sbjct: 188 VDMYSKCGDLCMARRCFEMMPIK-SVVSWTSMLCAQTKHGSVDAAR 232
>gi|224066751|ref|XP_002302197.1| predicted protein [Populus trichocarpa]
gi|222843923|gb|EEE81470.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 260 bits (664), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 132/329 (40%), Positives = 200/329 (60%), Gaps = 6/329 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR LF+++P+RN W++MI GY K GNV EAR F+R+P+RN+ +W+++I Y G
Sbjct: 106 ARLLFEDMPQRNFFVWSSMISGYCKIGNVKEARAIFDRVPVRNLVNWNSLICGYSQNGFC 165
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ L F +M NEG PD++T+ VLS C+ L L +GK H I +LNE +
Sbjct: 166 EEALDAFGKM-QNEGYEPDEVTVVGVLSACAQLSL--LDVGKDVHKMICAKGMKLNEFVV 222
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
LVDMYAKCG L A ++FE M +N W ++I G A G +++AL F M+ + K
Sbjct: 223 NALVDMYAKCGDLTGARLIFERMTNKNNACWNSMISGFAVHGKTKEALEFFGRMEESNEK 282
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+E+TF VL+ACVH G V+ G + F + E Y L I+HYGC+VDL G+AG +++AY
Sbjct: 283 PDEITFLSVLSACVHGGFVEVGLEIFSKM-ERYGLSASIKHYGCLVDLLGRAGRIQDAYH 341
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV--FTLICDLYT 366
+I++M ++PN +WG+FL AC+ H DM E+V++ + G + L+ ++Y
Sbjct: 342 LIKSMPMKPNDTVWGAFLGACRIHMDNDMVEQVVEDVCTSDSSVDSGNDPHYALLLNIYA 401
Query: 367 MNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ WE A RV +M ++ ++K G S +
Sbjct: 402 GSGSWEKAGRVSMVMADRGLQKTSGRSSL 430
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 136/268 (50%), Gaps = 15/268 (5%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
+RKLF+ +PERN VTWN MI GY K+G++ A F++M RN SW MI + +G
Sbjct: 11 SRKLFEYMPERNVVTWNAMISGYGKNGDMKSASVLFDKMSTRNAVSWIEMIDGFARSGDM 70
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ F E+ + +T ++ G + G + A + ++ + N +
Sbjct: 71 VAARRTFNEVPFE---LKNVVTWTVMIDGYASKGEM------EAARLLFEDMPQRNFFVW 121
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
+ ++ Y K G +K A +F+ + RN+++W +LICG + G+ E+AL F MQ G +
Sbjct: 122 SSMISGYCKIGNVKEARAIFDRVPVRNLVNWNSLICGYSQNGFCEEALDAFGKMQNEGYE 181
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHY--GCMVDLFGKAGFLEEA 306
P+E+T GVL+AC L+D G+ KMI + ++ + +VD++ K G L A
Sbjct: 182 PDEVTVVGVLSACAQLSLLDVGKDVHKMICAK---GMKLNEFVVNALVDMYAKCGDLTGA 238
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
+ M + N W S ++ H +
Sbjct: 239 RLIFERMTNKNNA-CWNSMISGFAVHGK 265
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 9/138 (6%)
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
MYAKCG + + +FE M ERNV++W A+I G G + A LF+ M N ++
Sbjct: 1 MYAKCGDIPDSRKLFEYMPERNVVTWNAMISGYGKNGDMKSASVLFDKMSTR----NAVS 56
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
+ ++ +G + R+ F + E + + M+D + G +E A + M
Sbjct: 57 WIEMIDGFARSGDMVAARRTFNEVPFEL---KNVVTWTVMIDGYASKGEMEAARLLFEDM 113
Query: 314 RLEPNVIIWGSFLAA-CK 330
+ N +W S ++ CK
Sbjct: 114 P-QRNFFVWSSMISGYCK 130
>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 573
Score = 260 bits (664), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 144/402 (35%), Positives = 227/402 (56%), Gaps = 11/402 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ ++ +M V D + +L S + +L + H+ IL G +V TSLL+
Sbjct: 47 ISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNM 106
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A+++FD+ ++ WN+++ Y+K+G + +AR F+ MP RNV SWS +I
Sbjct: 107 YSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLI 166
Query: 120 AAYLNAGAYDPGLKLFREM---ISNEGLT-PDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
Y+ G Y L LFREM NE P++ T+ VLS C LG+ L GK H +
Sbjct: 167 NGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGA--LEQGKWVHAY 224
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFE-LMEERNVISWTALICGSAHRGYSED 234
I K E++ + T L+DMYAKCG L+ A VF L +++V +++A+IC A G +++
Sbjct: 225 IDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDE 284
Query: 235 ALSLF-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293
LF EM + + PN +TF G+L ACVH GL++EG+ YFKM+ EE+ + P IQHYGCM
Sbjct: 285 CFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCM 344
Query: 294 VDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353
VDL+G++G ++EA I +M +EP+V+IWGS L+ + E +K+ + + P N
Sbjct: 345 VDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIEL-DPMN 403
Query: 354 DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G + L+ ++Y +W + +R M + + K G S +
Sbjct: 404 SGA-YVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYV 444
>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
Length = 639
Score = 260 bits (664), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 144/401 (35%), Positives = 233/401 (58%), Gaps = 13/401 (3%)
Query: 1 MQLFSQMHRQS-VPSDSFSILHILKSCTHFNNLTVIHHLHSHI-LKLGFISHVYVATSLL 58
+ +F +M R+S + +D +++ L +C+ N V +H ++ +L + + +LL
Sbjct: 200 IAVFRRMRRESNLKADEATVVSTLSACSVLRNQEVGEEIHRYVDAELEMTTKI--GNALL 257
Query: 59 HEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
Y AR +FDE+ +N + W +M+ GY+ +G++ EAR+ FER P+R++ W+A
Sbjct: 258 DMYCKCGCVDKARAIFDEMGNKNVICWTSMVSGYASNGSLDEARELFERSPVRDIVLWTA 317
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MI Y+ +D LKLFR+M + L PD + +L GC+ G+ L GK HG+I
Sbjct: 318 MINGYVQFNLFDEALKLFRKM-QIQRLRPDNFILVTLLKGCAQTGA--LEQGKWLHGYIH 374
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
+N L+ + T LVD+YAKCG ++ AL VF M+ER+ SWT++I G A G + AL
Sbjct: 375 ENSITLDRVVGTALVDVYAKCGCVEKALEVFYEMKERDTASWTSVIYGLAVNGMTSKALD 434
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
F M+ G +P+++TF GVLTAC H GLV+EGR+YF + + Y ++P+ +HY C++DL
Sbjct: 435 FFSQMEEAGFRPDDITFIGVLTACNHGGLVEEGRRYFDSMTKTYKIQPKSEHYSCLIDLL 494
Query: 298 GKAGFLEEAYEVIRTMRLEPNVII---WGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
+AG L+EA ++ + +E + I+ + S L+AC+ + M+ERV ++ R+ D
Sbjct: 495 CRAGLLDEAELLLEMIPIESSDIVVPLYCSLLSACRNYGNLKMSERVGRRLERV--EVKD 552
Query: 355 GGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
V TL+ +Y +WE VR+ M +RK G S I
Sbjct: 553 SSVHTLLASVYASANRWEDVTTVRRKMKELGIRKFPGCSSI 593
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/355 (24%), Positives = 154/355 (43%), Gaps = 68/355 (19%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LFS++ +Q + D+F++ + K+ + +H +++K GF
Sbjct: 103 LFSELRKQGLNPDNFTLPPVFKAMGCLGKVVEGEKVHGYVVKSGF--------------- 147
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
+A N+++ Y G + A+ F+ +P R+V SW+ +I++Y
Sbjct: 148 -----------------DACVCNSVMGMYGALGKMEVAKKVFDEIPERDVVSWNVLISSY 190
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+ ++ + +FR M L D+ T+ + LS CS L + + G+ H + V E E
Sbjct: 191 VGHRKFEDAIAVFRRMRRESNLKADEATVVSTLSACSVLRNQEV--GEEIHRY-VDAELE 247
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRG------------ 230
+ +I L+DMY KCG + A +F+ M +NVI WT+++ G A G
Sbjct: 248 MTTKIGNALLDMYCKCGCVDKARAIFDEMGNKNVICWTSMVSGYASNGSLDEARELFERS 307
Query: 231 -------------------YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR 271
++AL LF MQ ++P+ +L C TG +++G+
Sbjct: 308 PVRDIVLWTAMINGYVQFNLFDEALKLFRKMQIQRLRPDNFILVTLLKGCAQTGALEQGK 367
Query: 272 KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
I E R+ +VD++ K G +E+A EV M+ E + W S +
Sbjct: 368 WLHGYIHENSITLDRVVGTA-LVDVYAKCGCVEKALEVFYEMK-ERDTASWTSVI 420
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/370 (23%), Positives = 170/370 (45%), Gaps = 47/370 (12%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPER 79
+ +L+SC +LT +H+ I ++G ++ T ++ LF P R
Sbjct: 20 VDLLQSCESMAHLT---QIHAKIFRVGLQDNMDTLTKIV-------------LFCTDPSR 63
Query: 80 NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI 139
++ + + G+ +S P + ++ MI A + L LF E+
Sbjct: 64 GSIRYAERVLGFVQS-------------PC--LVMYNLMIKAVAKDENFRKVLVLFSEL- 107
Query: 140 SNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG 199
+GL PD T+ V LG V + G+ HG++VK+ + + + ++ MY G
Sbjct: 108 RKQGLNPDNFTLPPVFKAMGCLGKV--VEGEKVHGYVVKSGF--DACVCNSVMGMYGALG 163
Query: 200 FLKYALMVFELMEERNVISWTALICG-SAHRGYSEDALSLFEMMQ-ATGVKPNEMTFTGV 257
++ A VF+ + ER+V+SW LI HR + EDA+++F M+ + +K +E T
Sbjct: 164 KMEVAKKVFDEIPERDVVSWNVLISSYVGHRKF-EDAIAVFRRMRRESNLKADEATVVST 222
Query: 258 LTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEP 317
L+AC + G + + +D E ++ +I + ++D++ K G +++A + M
Sbjct: 223 LSACSVLRNQEVGEEIHRYVDAELEMTTKIGN--ALLDMYCKCGCVDKARAIFDEMG-NK 279
Query: 318 NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERV 377
NVI W S ++ + D A + +++ P D ++T + + Y ++ A ++
Sbjct: 280 NVICWTSMVSGYASNGSLDEARELFERS-----PVRDIVLWTAMINGYVQFNLFDEALKL 334
Query: 378 RKLMLNQNVR 387
+ M Q +R
Sbjct: 335 FRKMQIQRLR 344
>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
Length = 914
Score = 260 bits (664), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 143/436 (32%), Positives = 233/436 (53%), Gaps = 53/436 (12%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-- 61
FS M R+ DSF+ ++K+ + + + +HSH++KLG + +V +L+ Y
Sbjct: 440 FSAMPRR----DSFTYSFLIKALS-AAGVAPVRAVHSHVVKLGSVEDTFVGNALIDAYSK 494
Query: 62 ------------------VVT------------SFGFARKLFDELPERNAVTWNTMIKGY 91
VV+ ARKLFDE+PE++ V+WNT++ GY
Sbjct: 495 NGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGARKLFDEMPEKDTVSWNTILDGY 554
Query: 92 SKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYD---------PGLKL--FREMIS 140
+K+G V A + F+RMP RNV SWS M++ Y G + PG L + M+
Sbjct: 555 TKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPGKNLVTWTIMMK 614
Query: 141 NEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGF 200
+ D + ++L+ C+ GS+ L GK H ++ K + + L+DM+ KCG
Sbjct: 615 EASVELDVAAVVSILAACAESGSLSL--GKRIHRYVRKRNLGRSTHVCNALIDMFCKCGC 672
Query: 201 LKYALMVFELME-ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLT 259
+ A VF+ +++ +SW ++I G A G+ + AL LF M+ G P+ +T VL+
Sbjct: 673 VNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLS 732
Query: 260 ACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNV 319
AC H G VDEGR+YF ++ +Y + P+I+HYGCM+DL G+ G ++EA ++I++M EPN
Sbjct: 733 ACTHMGFVDEGRRYFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNE 792
Query: 320 IIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRK 379
+IWGS L+AC+ HK + AE + + L ++P N G + ++ ++Y +W + R
Sbjct: 793 VIWGSLLSACRLHKNVEYAEIAVNE-LSKLQPSNAGN-YAVLSNIYAEAGQWSDMAKARM 850
Query: 380 LMLNQNVRKARGSSVI 395
M +K GSS +
Sbjct: 851 QMKGTGSQKTAGSSWV 866
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 77/326 (23%), Positives = 128/326 (39%), Gaps = 68/326 (20%)
Query: 35 IHHLHSHILKLGFISHVYVATSLLHEYVVTSF-GFARKLFDEL--PERNAVTWNTMIKGY 91
+ LH+ +LK G + A L+ Y + +R++FD + P +A NTM++ Y
Sbjct: 368 VRELHAQVLKQGLHLNPRAAARLVSAYALLRLLPSSRRVFDAIRDPHADAFLANTMLRAY 427
Query: 92 SKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTI 151
+ G +A F MP R+ ++S +I A +S G+ P +
Sbjct: 428 ALGGAPRDALAAFSAMPRRDSFTYSFLIKA-----------------LSAAGVAP----V 466
Query: 152 GAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELM 211
AV S LGSV + + L+D Y+K G A VF+ M
Sbjct: 467 RAVHSHVVKLGSV------------------EDTFVGNALIDAYSKNGGFSDARKVFDEM 508
Query: 212 EERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR 271
ER+V+SW + G A LF+ M + + +++ +L G V+
Sbjct: 509 PERDVVSWNTAMAAMVREGELAGARKLFDEMP----EKDTVSWNTILDGYTKAGEVEAAF 564
Query: 272 KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWG-------- 323
+ F+ + E + + MV + K G LE A + M + N++ W
Sbjct: 565 ELFQRMPER-----NVVSWSTMVSGYCKKGDLEMARVIFDKMPGK-NLVTWTIMMKEASV 618
Query: 324 --------SFLAACKEHKQFDMAERV 341
S LAAC E + +R+
Sbjct: 619 ELDVAAVVSILAACAESGSLSLGKRI 644
>gi|357439099|ref|XP_003589826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478874|gb|AES60077.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 526
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 151/398 (37%), Positives = 226/398 (56%), Gaps = 9/398 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F + R + DS+S+ ++LKS N+ + +H + G +V V +SL+
Sbjct: 97 VSIFRSVRRLGLSFDSYSLPYVLKSVVCLNDFGLGKQIHCVGVVTGLDKNVSVCSSLIQM 156
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRN--VASWSAM 118
Y ARKLFDE N N MI Y K G+V AR F+ M R+ V SW+AM
Sbjct: 157 YSCYDVCSARKLFDEFGG-NGCVLNAMIVAYVKVGDVSNARKLFDSMLERDKDVFSWTAM 215
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I+ Y A + +KLFR M E + PD++ I AVLS C+ LG+ L +G+ H +I K
Sbjct: 216 ISGYTQAHNPNEAIKLFRRM-QLENVKPDEIAILAVLSACADLGA--LHLGEWIHNYIEK 272
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
++ + L+DMYAK G ++ AL +FE M+ + +I+WT +I G A G ++AL +
Sbjct: 273 HKLSKIVPLYNSLIDMYAKSGNIRKALELFENMKHKTIITWTTMIAGLALHGLGKEALRV 332
Query: 239 FEMMQATG-VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
F M+ VKPNE+TF +L+AC H GLV+ GR YF + Y +EP+I+HYGCM+DL
Sbjct: 333 FSCMEKEDRVKPNEVTFIAILSACSHVGLVELGRDYFTSMRSRYGIEPKIEHYGCMIDLL 392
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
G+AG L+EA E++ M E N IWGS LAA ++AE ++ L +++P + G
Sbjct: 393 GRAGHLQEAKEMVLRMPFEANAAIWGSLLAASTRCGDAELAEEALRH-LTVLEPGHCGN- 450
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++L+ + Y +W + VRK+M + V K G S I
Sbjct: 451 YSLLSNTYASLGRWNESRMVRKVMQDAGVEKVPGVSFI 488
>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 642
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 138/385 (35%), Positives = 220/385 (57%), Gaps = 8/385 (2%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLF 73
D F+ +LKS ++ + +H IL++G +YVATSL+ Y A K+F
Sbjct: 133 DYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVF 192
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
D + R+ +WN ++ GY+KSG + A FERMP RN+ SW+ MI+ Y +G L
Sbjct: 193 DNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALS 252
Query: 134 LFREMIS-NEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILV 192
LF EM+ + G+ P+ +TI +VL C+ L + L G+ H + N + L
Sbjct: 253 LFDEMVKEDSGVRPNWVTIMSVLPACAQLST--LERGRQIHELACRMGLNSNASVLIALT 310
Query: 193 DMYAKCGFLKYALMVFELME--ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250
MYAKCG L A F+ + E+N+I+W +I A G+ A+S F M G++P+
Sbjct: 311 AMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPD 370
Query: 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI 310
++TFTG+L+ C H+GLVD G KYF + Y + PR++HY C+ DL G+AG L EA +++
Sbjct: 371 DITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLV 430
Query: 311 RTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEK 370
M + IWGS LAAC++H+ +MAE ++ L +++PEN G + L+ ++Y +
Sbjct: 431 GEMPMPAGPSIWGSLLAACRKHRNLEMAETAARK-LFVLEPENTGN-YVLLSNMYAEAGR 488
Query: 371 WEGAERVRKLMLNQNVRKARGSSVI 395
W+ +++R ++ +Q +K+ G S I
Sbjct: 489 WQEVDKLRAIVKSQGTKKSPGCSWI 513
>gi|297742136|emb|CBI33923.3| unnamed protein product [Vitis vinifera]
Length = 461
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 148/451 (32%), Positives = 234/451 (51%), Gaps = 70/451 (15%)
Query: 7 MHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS- 65
M R+ V + ++ ++K C ++ +H+ ILK GF ++V SL+H Y V
Sbjct: 1 MVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGR 60
Query: 66 -------------------------------FGFARKLFDELPERNAVTWNTMIKGYSKS 94
G AR+LF+E+PER+ +WN+MI GY +
Sbjct: 61 IGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGYVGN 120
Query: 95 GNVCEARDFFERMPLR-------------------------------NVASWSAMIAAYL 123
G++ A D F +MP R NV SW+ M+A Y+
Sbjct: 121 GDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYV 180
Query: 124 NAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE-WE 182
YD L++F +M+ P++ T+ +VL+ C+HLG L GK H +I N E
Sbjct: 181 RIKDYDECLRMFDKMMGET--MPNEATLVSVLTACAHLGR--LDRGKWIHSYIKNNRVIE 236
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
+ ++T L+ MYAKCG + A VF+ M R+V+SW ++I G G ++ AL +F M
Sbjct: 237 PDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDM 296
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
+ G PN+ TF VL+AC H+G++ EG YF ++ Y +EP+++HYGCMVDL G+AG
Sbjct: 297 EKRGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGL 356
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362
+++ E+IR M +E +WG+ L+AC+ H ++AE V K+ + + +P D G + L+
Sbjct: 357 MKDLEELIRKMPMEGGTALWGALLSACRTHSNSELAEIVAKRLIEL-EPR-DIGPYLLLS 414
Query: 363 DLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
++Y KW+ E VRK+M + + K G S
Sbjct: 415 NIYAAEGKWDDVEIVRKMMKERGLTKTTGLS 445
>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Vitis vinifera]
Length = 647
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 139/400 (34%), Positives = 234/400 (58%), Gaps = 19/400 (4%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSH-ILKLGFISHVYVATSLLHEY 61
L++ M RQ + SF+ +LK+C+ ++ + +H+ IL GF S +YV +L+ Y
Sbjct: 126 LYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMY 185
Query: 62 V-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
V G ++FDE+ +R+ ++W ++I Y+K GN+ A + F+ +P++++ +W+AM+
Sbjct: 186 VKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVT 245
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y L++F M G+ D++T+ V+S C+ LG+ + + V++
Sbjct: 246 GYAQNARPREALEVFERM-QAAGVKTDEVTLVGVISACAQLGA-------AKYANWVRDV 297
Query: 181 WEL-------NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE 233
E N + + L+DMYAKCG ++ A VFE MEERNV S++++I G A G +
Sbjct: 298 AEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAG 357
Query: 234 DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293
A+ LF+ M T +KPN +TF GVLTAC H G+V++G++ F M++E + + P HY CM
Sbjct: 358 AAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYACM 417
Query: 294 VDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353
VDL G+AG LEEA +++ M + P+ +WG+ L AC+ H DMA+ + L ++P N
Sbjct: 418 VDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQ-IAASHLFELEP-N 475
Query: 354 DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
G + L+ ++Y +W+ +VRKLM + ++K G S
Sbjct: 476 GIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCS 515
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 94/371 (25%), Positives = 148/371 (39%), Gaps = 77/371 (20%)
Query: 19 ILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV---VTSFGFARKLFDE 75
++ +L CTH N + +H+HI + G +V LL V + R +F +
Sbjct: 42 LVSVLHGCTHINQ---VKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQ 98
Query: 76 LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF 135
+ N W +I+GY+ G F E + L N
Sbjct: 99 VEYPNPFLWTALIRGYALQG------PFMESVLLYNS----------------------- 129
Query: 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG-FIVKNEWELNEQIATILVDM 194
+ +G+ P T A+L CS V L G+ H I+ + + + L+DM
Sbjct: 130 ---MRRQGIGPVSFTFTALLKACSAALDVNL--GRQVHTQTILIGGFGSDLYVGNTLIDM 184
Query: 195 YAKCGFLKYALMVFELMEERNVISWTALIC------------------------------ 224
Y KCG L VF+ M +R+VISWT+LI
Sbjct: 185 YVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMV 244
Query: 225 -GSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDL 283
G A +AL +FE MQA GVK +E+T GV++AC G + + + E+
Sbjct: 245 TGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYA-NWVRDVAEQSGF 303
Query: 284 EP--RIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERV 341
P + ++D++ K G +E+AY+V M E NV + S + H A +
Sbjct: 304 GPTSNVVVGSALIDMYAKCGSVEDAYKVFERME-ERNVYSYSSMIVGFAMHGLAGAAMEL 362
Query: 342 IKQALRM-VKP 351
+ L+ +KP
Sbjct: 363 FDEMLKTEIKP 373
>gi|125528598|gb|EAY76712.1| hypothetical protein OsI_04667 [Oryza sativa Indica Group]
Length = 548
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 128/329 (38%), Positives = 199/329 (60%), Gaps = 6/329 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR+LF+++P RNA W++M+ G K+GN EA+ F+++P+RN+ +W+A+IA Y G
Sbjct: 204 ARELFNKMPARNAFVWSSMVTGNFKAGNADEAQAVFDKIPVRNLVNWNALIAGYAKMGCC 263
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ L+ F M+ ++ + PD+ T+ VLS C+ LGS L + H FI+++ N+ +
Sbjct: 264 EKALEAFHSMLKDK-IKPDEFTMAGVLSACAQLGS--LEQARKVHNFIIQHRIRKNQFVM 320
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
LVDM+AKCG L +A +F+ M+ RN W ++I + G S +A+ LF M+ + K
Sbjct: 321 NGLVDMFAKCGDLAFARNIFDNMQWRNTECWNSMISALSSHGQSIEAIRLFSKMECSEQK 380
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
PNE+T VL AC H G VDEG + F D Y + ++HYGC+VDL G+AG L EAYE
Sbjct: 381 PNEITLLAVLGACTHGGFVDEGLRIFSKFD-IYGVAAAVEHYGCLVDLLGRAGRLREAYE 439
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ--ALRMVKPENDGGVFTLICDLYT 366
+++ M +EPN +IWGS L AC+ H +M+E V + L + + + L+ ++
Sbjct: 440 IVKNMLVEPNEVIWGSLLGACRVHGDAEMSELVSSEIHQLHSRRVSTNDAEYILLSNIMA 499
Query: 367 MNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+E+WE AER+R+ M V K G S +
Sbjct: 500 SSERWEQAERMRRKMALHGVGKTPGCSSV 528
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 118/278 (42%), Gaps = 46/278 (16%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL--RNVASWSAMIAAYLNAG 126
A LF + R VTW T+I+G++ G++ E R +FE MPL +NV +W+ + AY+ AG
Sbjct: 140 AEALFAGMGSRTPVTWATLIRGFAGKGDMAETRRWFEAMPLGMQNVVTWTVAVQAYVAAG 199
Query: 127 AYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ 186
+ +LF +M + M G
Sbjct: 200 DMETARELFNKMPARNAFVWSSMVTGNF-------------------------------- 227
Query: 187 IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
K G A VF+ + RN+++W ALI G A G E AL F M
Sbjct: 228 ----------KAGNADEAQAVFDKIPVRNLVNWNALIAGYAKMGCCEKALEAFHSMLKDK 277
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
+KP+E T GVL+AC G +++ RK I + + + G +VD+F K G L A
Sbjct: 278 IKPDEFTMAGVLSACAQLGSLEQARKVHNFIIQHRIRKNQFVMNG-LVDMFAKCGDLAFA 336
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
+ M+ N W S ++A H Q A R+ +
Sbjct: 337 RNIFDNMQWR-NTECWNSMISALSSHGQSIEAIRLFSK 373
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 100/240 (41%), Gaps = 46/240 (19%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++ F M + + D F++ +L +C +L +H+ I++ + +V L+
Sbjct: 267 LEAFHSMLKDKIKPDEFTMAGVLSACAQLGSLEQARKVHNFIIQHRIRKNQFVMNGLVDM 326
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
+ FAR +FD + RN WN+MI S G EA
Sbjct: 327 FAKCGDLAFARNIFDNMQWRNTECWNSMISALSSHGQSIEA------------------- 367
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
++LF +M +E P+++T+ AVL C+H G V G + +
Sbjct: 368 ------------IRLFSKMECSEQ-KPNEITLLAVLGACTHGGFVD-------EGLRIFS 407
Query: 180 EWELNEQIATI-----LVDMYAKCGFLKYAL-MVFELMEERNVISWTALICGSAHRGYSE 233
++++ A + LVD+ + G L+ A +V ++ E N + W +L+ G +E
Sbjct: 408 KFDIYGVAAAVEHYGCLVDLLGRAGRLREAYEIVKNMLVEPNEVIWGSLLGACRVHGDAE 467
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 79/178 (44%), Gaps = 8/178 (4%)
Query: 167 LMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGS 226
++G++ H VK+ + + T LV +Y KCG L A VF+ M +RN ++ A++ G
Sbjct: 72 VLGRALHAEAVKSANAHDRLVGTTLVSVYCKCGLLADARRVFDGMLDRNAVTCNAMLAGY 131
Query: 227 AHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR 286
A G A +LF M + +T+ ++ G + E R++F+ +
Sbjct: 132 AAAGDMVSAEALFAGMGSR----TPVTWATLIRGFAGKGDMAETRRWFEAMPLGMQ---N 184
Query: 287 IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
+ + V + AG +E A E+ M N +W S + + D A+ V +
Sbjct: 185 VVTWTVAVQAYVAAGDMETARELFNKMPAR-NAFVWSSMVTGNFKAGNADEAQAVFDK 241
>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 658
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 128/327 (39%), Positives = 197/327 (60%), Gaps = 4/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A+ +F ++PE+ V+W MI GY+ +G++ A + F MP++NV SW+AMI+ Y++ +
Sbjct: 222 AQSIFYQMPEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEF 281
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
D L +F M+ N PDQ T+ ++LS C+HLGS L GK + +I KN+ L+ +
Sbjct: 282 DQALCVFHHMLINGECRPDQTTLISILSACAHLGS--LEHGKWINSYIKKNKLHLSIPLG 339
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+DM+AKCG ++ A VF M +R +I+WT ++ G A G +A++LF+ M G K
Sbjct: 340 NALIDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTK 399
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+++ F VL+AC H GLV+EG++ F + +E+ ++PRI+HYGCMVDL G+AG LEEA
Sbjct: 400 PDDVIFIAVLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEEAVR 459
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
M L+PN +IW + L CK H D+ + V ++ + +P N TL+ +L
Sbjct: 460 FTARMHLKPNAVIWATLLFCCKIHGNGDLLKSVTEKIMDQ-EPSNP-SYLTLVSNLSASF 517
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
+WE R M Q + K G S I
Sbjct: 518 GRWEDVLSFRVAMRQQRMEKVPGCSSI 544
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 115/404 (28%), Positives = 192/404 (47%), Gaps = 39/404 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++++S+M V ++SF+ +LK L +H ILKLGF S V+V SLL
Sbjct: 59 LRVYSRMKALMVEANSFTFTFLLKCFETSQALEDGRVIHGEILKLGFGSSVFVQNSLLGF 118
Query: 61 YVVTS--FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y S G A ++F+E+PER+ ++WN+MI Y G + A ++MP RN+ +W+++
Sbjct: 119 YANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNIVTWNSV 178
Query: 119 IAAYLNAGAYDPGLKLFREM-ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
+ AG + +F +M + NE ++ +++SG +G V ++A
Sbjct: 179 VCGLSKAGNMELAHSVFEQMPLRNE------VSWNSMISGYVRIGDV-----RAAQSIF- 226
Query: 178 KNEWELNEQIA---TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
+++ E+ T ++ YA G LK A +F M +NV+SW A+I G H +
Sbjct: 227 ---YQMPEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQ 283
Query: 235 ALSLFEMMQATG-VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293
AL +F M G +P++ T +L+AC H G ++ G K+ ++ L I +
Sbjct: 284 ALCVFHHMLINGECRPDQTTLISILSACAHLGSLEHG-KWINSYIKKNKLHLSIPLGNAL 342
Query: 294 VDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA------CKEH-KQFDMAERVIKQAL 346
+D+F K G +E A EV M + +I W + ++ C+E FD K L
Sbjct: 343 IDMFAKCGDVENAKEVFHHMS-KRCIITWTTMVSGLAVNGKCREAINLFD------KMCL 395
Query: 347 RMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKAR 390
KP D +F + T E +RV M+ + K R
Sbjct: 396 EGTKP--DDVIFIAVLSACTHGGLVEEGKRVFDQMVQEFGIKPR 437
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 134/393 (34%), Positives = 228/393 (58%), Gaps = 35/393 (8%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF M + +VP + +I+ +L +C N L + + + S I G S++ +
Sbjct: 248 LFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLV-------- 299
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
N +I YSK G++ AR+ F+ M R+V SW+ MI Y
Sbjct: 300 ----------------------NALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGY 337
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+ +Y L LFREM+++ G+ P ++T ++L C+HLG++ L GK H +I KN
Sbjct: 338 THMCSYKEALALFREMLAS-GVEPTEITFLSILPSCAHLGAIDL--GKWIHAYINKNFNS 394
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
++ ++T L+D+YAKCG + A VF+ M+ +++ SW A+ICG A G ++ A LF M
Sbjct: 395 VSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKM 454
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
+ G++PNE+TF G+L+AC H GLVD G+++F + ++Y + P+ QHYGCM+DL G+AG
Sbjct: 455 SSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGL 514
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362
EEA +++ M ++P+ IWGS L AC++H + ++ E ++ + L ++P+N G + L+
Sbjct: 515 FEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGE-LVAERLFELEPDNPGA-YVLLS 572
Query: 363 DLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y KW+ R+R + ++ ++K G + I
Sbjct: 573 NIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTI 605
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 112/337 (33%), Positives = 185/337 (54%), Gaps = 6/337 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
F +M V +S++ +LKSC + +H+H+LKLGF+S V++ TSL++ Y
Sbjct: 116 FFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYA 175
Query: 63 VTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+ A+ +FD+ R+A+++ +I GY+ G + AR F+ MP+++V SW+AMIA
Sbjct: 176 QSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAG 235
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y G L LF +M + P++ TI +VLS C+ S L +G S +I
Sbjct: 236 YAQMGRSKEALLLFEDM-RKANVPPNESTIVSVLSACAQ--SNALDLGNSMRSWIEDRGL 292
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
N ++ L+DMY+KCG L+ A +F+ M ER+VISW +I G H ++AL+LF
Sbjct: 293 CSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFRE 352
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M A+GV+P E+TF +L +C H G +D G+ I++ ++ ++DL+ K G
Sbjct: 353 MLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTS-LIDLYAKCG 411
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
+ A +V M+++ ++ W + + H Q D A
Sbjct: 412 NIVAARQVFDGMKIK-SLASWNAMICGLAMHGQADKA 447
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/337 (26%), Positives = 143/337 (42%), Gaps = 73/337 (21%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDEL 76
L +L C ++ +H+HI+K G + ++ + L+ V+ G +A LF+ +
Sbjct: 33 LKLLSKC---QSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSI 89
Query: 77 PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFR 136
E N WN+MI+G S S + A FF RM
Sbjct: 90 EEPNLFIWNSMIRGLSMSLSPALALVFFVRMIY--------------------------- 122
Query: 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA 196
G+ P+ T +L C+ L S GK H ++K + + I T L++MYA
Sbjct: 123 -----SGVEPNSYTFPFLLKSCAKLASAH--EGKQIHAHVLKLGFVSDVFIHTSLINMYA 175
Query: 197 KC-------------------------------GFLKYALMVFELMEERNVISWTALICG 225
+ G++ A +F+ M ++V+SW A+I G
Sbjct: 176 QSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAG 235
Query: 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP 285
A G S++AL LFE M+ V PNE T VL+AC + +D G I E+ L
Sbjct: 236 YAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWI-EDRGLCS 294
Query: 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
++ ++D++ K G L+ A E+ M LE +VI W
Sbjct: 295 NLKLVNALIDMYSKCGDLQTARELFDDM-LERDVISW 330
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 88/393 (22%), Positives = 156/393 (39%), Gaps = 96/393 (24%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF +M V + L IL SC H + + +H++I K ++TSL+
Sbjct: 347 LALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDL 406
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + AR++FD + ++ +WN MI G + G +A + F +M
Sbjct: 407 YAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKM------------ 454
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
S++G+ P+++T +LS C H G V
Sbjct: 455 --------------------SSDGIEPNEITFVGILSACKHAGLV--------------- 479
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+L +Q + +V Y ++ + +L+ G E+A SL
Sbjct: 480 --DLGQQFFSSMVQDYKISPKSQHYGCMIDLL---------------GRAGLFEEAESLL 522
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE-YDLEP-RIQHYGCMVDLF 297
+ M+ VKP+ + +L AC G V+ G +++ E ++LEP Y + +++
Sbjct: 523 QNME---VKPDGAIWGSLLGACRDHGRVELG----ELVAERLFELEPDNPGAYVLLSNIY 575
Query: 298 GKAGFLEEAYEV-----IRTMRLEPNVI------IWGSFLAACKEHKQFDMAERVIKQAL 346
AG ++ + R M+ P + FL K H Q + R++++
Sbjct: 576 AGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVD 635
Query: 347 RMVKPENDGGVFTLICD----LYTMNEKW-EGA 374
+K VF + D LY M+E+W EGA
Sbjct: 636 EQLK------VFGFVADTSEVLYDMDEEWKEGA 662
>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 638
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 133/400 (33%), Positives = 227/400 (56%), Gaps = 8/400 (2%)
Query: 1 MQLFSQMHRQSVPS-DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+ L+S M R V + + ++ +L++C++ + + +H++KLGF+ V+V +L+H
Sbjct: 117 ISLYSHMCRSFVAAPNKHTLTFVLQACSNAFAIREGAQVQTHVIKLGFVKDVFVRNALIH 176
Query: 60 EYVVTS-FGFARKLFDELPE-RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
Y A+++FDE+P R+ V+WN+MI G+ + G + A+ F MP ++V SW
Sbjct: 177 LYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQISVAQKLFVEMPEKDVISWGT 236
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
+I+ + G + L F+E+ + L P++ + ++L+ + LG+ L GK H
Sbjct: 237 IISGCVQNGELEKALDYFKEL-GEQKLRPNEAILVSLLAAAAQLGT--LEYGKRIHSIAN 293
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
+ + + T LVDMYAKCG + + +F+ M E++ SW +ICG A G ++AL+
Sbjct: 294 SLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLATHGLGQEALA 353
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LFE G P +TF GVLTAC GLV EG+ +FK++ + Y +EP ++HYGCMVDL
Sbjct: 354 LFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEMEHYGCMVDLL 413
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
+AGF+ +A E+I M P+ ++W S L +C+ H ++ E + + ++M N G
Sbjct: 414 SRAGFVYDAVEMINRMPAPPDPVLWASVLGSCQVHGFIELGEEIGNKLIQMDPTHN--GH 471
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
+ + ++ KWE +VR+LM +N K G S+I +
Sbjct: 472 YVQLARIFARLRKWEDVSKVRRLMAERNSNKIAGWSLIEA 511
>gi|357142551|ref|XP_003572610.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Brachypodium distachyon]
Length = 454
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 137/361 (37%), Positives = 215/361 (59%), Gaps = 10/361 (2%)
Query: 39 HSHILKLGFISHVYVATSLLHEYVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNV 97
H+ LK G ++H V SLL Y AR++FD + +WNTM+ GY KSG++
Sbjct: 99 HAQALKCGALAHSVVTNSLLKLYCTLGLLPHARRVFDSGAALDVASWNTMVSGYGKSGDL 158
Query: 98 CEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSG 157
AR+ F RMP RN+ SWSAMI A ++A + L +F +M+ EG PD + + ++L
Sbjct: 159 AAAREVFGRMPGRNLVSWSAMIDALVHAEEFGEALSVFDQMM-REGFKPDVVVLVSMLKA 217
Query: 158 CSHLGSVGLLMGKSAHGFIVKNEW---ELNEQIATILVDMYAKCGFLKYALMVFELMEER 214
C+HLG+V G+ AH ++ + + N + T LVDMY KCG ++ A VF+ + R
Sbjct: 218 CAHLGAVK--RGRWAHQYLETEGFAGRQRNVMVETALVDMYCKCGCMEEAWCVFDGVRYR 275
Query: 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF 274
+V+ W ++I G A G+ + AL LF+ M G PN+ TF G L AC HTG VDEGR+ F
Sbjct: 276 DVVLWNSMIGGLAMNGHGDRALELFQRMLQEGFVPNQSTFAGALCACTHTGHVDEGREIF 335
Query: 275 KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
K + + +EP+ +HYGC+ DL G+AG + EA V+ M +EP+ WG+ + +C+ H
Sbjct: 336 KSM-WHHGIEPQREHYGCLADLLGRAGRVGEAEAVLLDMPMEPHASQWGALMLSCQMHND 394
Query: 335 FDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSV 394
+ ERV K+ + + +P + GG + ++ +LY +N W+ A +R++M+ + +K G S+
Sbjct: 395 ITVGERVGKRLIEL-EPHH-GGRYAILFNLYAVNGLWDDARAIRQMMVEKGAKKDAGLSL 452
Query: 395 I 395
+
Sbjct: 453 V 453
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 97/228 (42%), Gaps = 39/228 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F QM R+ D ++ +LK+C H +K G +H Y+ T
Sbjct: 193 LSVFDQMMREGFKPDVVVLVSMLKACAHLG-----------AVKRGRWAHQYLETE---- 237
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
GFA + +RN + ++ Y K G + EA F+ + R+V W++MI
Sbjct: 238 ------GFAGR------QRNVMVETALVDMYCKCGCMEEAWCVFDGVRYRDVVLWNSMIG 285
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
G D L+LF+ M+ EG P+Q T L C+H G V G+ I K+
Sbjct: 286 GLAMNGHGDRALELFQRML-QEGFVPNQSTFAGALCACTHTGHVD--EGRE----IFKSM 338
Query: 181 W----ELNEQIATILVDMYAKCGFLKYA-LMVFELMEERNVISWTALI 223
W E + L D+ + G + A ++ ++ E + W AL+
Sbjct: 339 WHHGIEPQREHYGCLADLLGRAGRVGEAEAVLLDMPMEPHASQWGALM 386
>gi|115468780|ref|NP_001057989.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|50725579|dbj|BAD33047.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|113596029|dbj|BAF19903.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|125597760|gb|EAZ37540.1| hypothetical protein OsJ_21869 [Oryza sativa Japonica Group]
Length = 530
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 139/395 (35%), Positives = 233/395 (58%), Gaps = 8/395 (2%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L QM R V D +++ + +C+ +L++ +H ++ + F ++ VA +LL Y
Sbjct: 137 LSEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNV-FGFNLPVANALLDMYT 195
Query: 63 VTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
A KLF+++P RN ++W ++ GY +G + +AR F + +++ W+AMI A
Sbjct: 196 KNDCLEEAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINA 255
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
+ G ++ L LFR+M + + PD+ T+ +L+ C++LG+ L G+ H + + +
Sbjct: 256 CVQHGCFEEALTLFRDM-QMQRVEPDRFTVVTLLTCCANLGA--LDQGEWIHQYAEQRKM 312
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+++ + T L+DMY+KCG ++ +L VF M+ R+ +WTA+ICG A G + AL LF+
Sbjct: 313 KIDAVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQD 372
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
MQ + VKP+ +TF GVL+AC H GLVDEGRK F + E Y +EPR++HY C+V+L G+AG
Sbjct: 373 MQRSKVKPDGVTFIGVLSACCHGGLVDEGRKQFHAMREVYQIEPRVEHYSCLVNLLGRAG 432
Query: 302 FLEEAYEVIRTMRLEPNVI-IWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
L+EA +I + + + + ++G+ L ACK H +M+ER+ K+ D V L
Sbjct: 433 LLDEAERLIGDVPINKDAMPLFGALLTACKAHGNVEMSERLTKRICEQDSQITD--VNLL 490
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y +WE RVR M + V+K G S+I
Sbjct: 491 MSNVYATASRWEDVIRVRGKMAHPTVKKNAGCSLI 525
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 98/398 (24%), Positives = 167/398 (41%), Gaps = 74/398 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
M ++ + + + +DSF+ +L++ H+ +K GF Y +SL+
Sbjct: 34 MAVYYDLRARGLVADSFTYPFVLRAVGVLKLSVEGRKAHAAAVKTGFRWDAYTGSSLMEM 93
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
Y TM+ G V AR F+ MP R + W+ M+
Sbjct: 94 Y------------------------TML------GRVDIARKVFDEMPSRALVLWNMMVR 123
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y+ G Y + L +M G+TPD++T+ ++ CS + L +G+ H ++ N
Sbjct: 124 CYIRCGWYSAAVALSEQM-ERSGVTPDRVTLVTAVTACSR--ARDLSLGRRIHVYM-DNV 179
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICG--------------- 225
+ N +A L+DMY K L+ A+ +FE M RN+ISWT L+ G
Sbjct: 180 FGFNLPVANALLDMYTKNDCLEEAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFN 239
Query: 226 ----------------SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
G E+AL+LF MQ V+P+ T +LT C + G +D+
Sbjct: 240 QCKEKDLILWTAMINACVQHGCFEEALTLFRDMQMQRVEPDRFTVVTLLTCCANLGALDQ 299
Query: 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAAC 329
G ++ E+ ++ ++D++ K G +E++ EV M+ + W + +
Sbjct: 300 G-EWIHQYAEQRKMKIDAVLGTALIDMYSKCGHIEKSLEVFWRMQ-GRDATAWTAIICGL 357
Query: 330 KEHKQFDMAERVIKQALR-MVKPENDG----GVFTLIC 362
+ Q A + + R VKP DG GV + C
Sbjct: 358 ATNGQAGRALELFQDMQRSKVKP--DGVTFIGVLSACC 393
>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Brachypodium distachyon]
Length = 552
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 134/393 (34%), Positives = 229/393 (58%), Gaps = 6/393 (1%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV 63
F M R V + + +L +C + + +H ++ G + + V +L+ Y
Sbjct: 111 FVDMVRTGVVPTPVTYITVLSACGKDKYIWLGMQVHKCVVASGVLPDLKVGNALIDMYAE 170
Query: 64 TS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
S A +LF+ + RN V+W ++I G+ + G V +AR F+ MP R+ SW+AMI Y
Sbjct: 171 CSEMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGY 230
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+ AG + L++FREM ++ + D+ T+ +V++ C+ LG+ L G+ A ++ ++ +
Sbjct: 231 VQAGQFREALEMFREMQFSK-VRADEFTMVSVVTACAQLGA--LETGEWARIYMSRHGIK 287
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
++ + LVDMY+KCG ++ AL VF+ M R+ +WTA+I G A G+ E+A+++F M
Sbjct: 288 MDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRM 347
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
P+E+TF GVLTAC H GLVD+GR +F + Y + P + H+GC++DL G+AG
Sbjct: 348 LRVFEAPDEVTFIGVLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHFGCLIDLLGRAGK 407
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362
L+EA E I M + PN IWG+ LAAC+ H ++ + + L + +G V+ L+
Sbjct: 408 LKEALETIGNMPMRPNSAIWGTLLAACRVHGNSEIGQLAAEHLLEL--DTENGMVYILLS 465
Query: 363 DLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+LY + +WE R+R++++ + ++K G S+I
Sbjct: 466 NLYAKSNRWEDVRRLRQVIMEKGIKKEPGCSLI 498
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 85/349 (24%), Positives = 149/349 (42%), Gaps = 71/349 (20%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVI-HHLHSHILKLGFISHVYVATSLLH 59
++++ M + D+++ +LK+ T + +H+H++K G + +VA+SL+
Sbjct: 3 LRVYVGMLARGARPDAYTFPPLLKAVTAAAERGAVGDAVHAHVVKFGMELNAHVASSLVL 62
Query: 60 EYVVTSFG-FARKLFDELPERNA---VTWNTMIKGYSKSGNVCEARDFFERMPLRNVASW 115
Y G AR L D P R V WN +I G+ +S R F R+ +
Sbjct: 63 MYAARGDGAVARTLLDAWPARGGDTPVVWNALISGHRRS------RQF--RLSCCS---- 110
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
F +M+ G+ P +T VLS C + L G H
Sbjct: 111 -------------------FVDMVRT-GVVPTPVTYITVLSACGKDKYIWL--GMQVHKC 148
Query: 176 IVKNEWELNEQIATILVDMYAKC--------------------------GFLKY-----A 204
+V + + ++ L+DMYA+C GFL+ A
Sbjct: 149 VVASGVLPDLKVGNALIDMYAECSEMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVDQA 208
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
+F+ M ER+ +SWTA+I G G +AL +F MQ + V+ +E T V+TAC
Sbjct: 209 RTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVTACAQL 268
Query: 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
G ++ G ++ ++ + ++ +VD++ K G +++A V + M
Sbjct: 269 GALETG-EWARIYMSRHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEM 316
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 112/261 (42%), Gaps = 16/261 (6%)
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
L+++ M++ G PD T +L + G + G + H +VK ELN +A+ L
Sbjct: 3 LRVYVGMLAR-GARPDAYTFPPLLKAVTAAAERGAV-GDAVHAHVVKFGMELNAHVASSL 60
Query: 192 VDMYAKCGFLKYALMVFELMEER---NVISWTALICGSAHRGYSEDALSL--FEMMQATG 246
V MYA G A + + R + W ALI G HR + LS F M TG
Sbjct: 61 VLMYAARGDGAVARTLLDAWPARGGDTPVVWNALISG--HRRSRQFRLSCCSFVDMVRTG 118
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
V P +T+ VL+AC + G + K + L P ++ ++D++ + ++ A
Sbjct: 119 VVPTPVTYITVLSACGKDKYIWLGMQVHKCVVASGVL-PDLKVGNALIDMYAECSEMDAA 177
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366
+E+ M + N + W S ++ Q D A + PE D +T + D Y
Sbjct: 178 WELFEGMEVR-NTVSWTSVISGFLRLGQVDQARTLFD-----CMPERDTVSWTAMIDGYV 231
Query: 367 MNEKWEGAERVRKLMLNQNVR 387
++ A + + M VR
Sbjct: 232 QAGQFREALEMFREMQFSKVR 252
>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
Length = 704
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 139/367 (37%), Positives = 215/367 (58%), Gaps = 18/367 (4%)
Query: 42 ILKLGFISHVYV-----ATSL-LHEYVVTSFG------FARKLFDELPERNAVTWNTMIK 89
+L G + H YV A S+ L +V FG +AR++FD + ++ +W +M+
Sbjct: 260 LLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVN 319
Query: 90 GYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQM 149
Y+K G++ A F+ MP RNV SWS MIAAY + + LFREMI+ G+ P
Sbjct: 320 AYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIA-AGVDPIDA 378
Query: 150 TIGAVLSGCSHLGSVGLLMGKSAH-GFIVKNEWELNEQIATILVDMYAKCGFLKYALMVF 208
T+ +VLS C+ LG + L G+ + +IV N+ L + L+DM+AKCG + A +F
Sbjct: 379 TLVSVLSACAQLGCLDL--GRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLF 436
Query: 209 ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
+ M ERNV+SW +I A G SE+A+ LFE ++ + P+++TF G+L +C H+GLV
Sbjct: 437 DEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVS 496
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
EGR+YFK ++ Y +EPR++HY CM+DL GK G LEEA+EV R M +E + WG+ L A
Sbjct: 497 EGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNA 556
Query: 329 CKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRK 388
C+ H ++ V + + + +D G++ L+ +Y KW+ + +R M ++ V+K
Sbjct: 557 CRMHGNVEIGACVADKLVEL--DPSDSGIYVLMSQIYASKNKWDQVKMLRMTMRDRGVKK 614
Query: 389 ARGSSVI 395
G S I
Sbjct: 615 NPGCSSI 621
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 102/384 (26%), Positives = 167/384 (43%), Gaps = 75/384 (19%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILK------SCTHFNNLTVIHHLHSHILKLGFISH-VYV 53
+ LF ++ R +P+D+ + + +K H + +H LK GF+ V V
Sbjct: 121 LGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGGTPSGGEAIHCAALKCGFVGESVLV 180
Query: 54 ATSLLHEYVV-TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNV 112
+L+H Y S A K+FDE+PER+ V+W T++ GY++
Sbjct: 181 GNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYAR------------------- 221
Query: 113 ASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL-MGKS 171
AG D +LF M+ G+ P+ +T+ A +S +G +GLL G
Sbjct: 222 ------------AGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSA---IGQMGLLAFGIM 266
Query: 172 AHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME------------------- 212
H ++ + + + LVDM+ KCG ++YA VF+ ME
Sbjct: 267 LHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGD 326
Query: 213 ------------ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260
RNV+SW+ +I + E+A+ LF M A GV P + T VL+A
Sbjct: 327 LESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSA 386
Query: 261 CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVI 320
C G +D GR ++ + + ++D+F K G + EA ++ M E NV+
Sbjct: 387 CAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMA-ERNVV 445
Query: 321 IWGSFLAACKEHKQFDMAERVIKQ 344
W + + A H Q + A R+ +Q
Sbjct: 446 SWNTMIMAHAVHGQSEEAIRLFEQ 469
>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 658
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 135/397 (34%), Positives = 228/397 (57%), Gaps = 9/397 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ ++ M ++ + SF+ +LK+C +L + H+ +L VYV +++
Sbjct: 135 IAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQFHAQTFRLRGFCFVYVGNTMIDM 194
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
YV S ARK+FDE+PER+ ++W +I Y++ GN+ A D FE +P +++ +W+AM+
Sbjct: 195 YVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESAADLFESLPTKDMVAWTAMV 254
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ L+ F M G+ D++T+ +S C+ LG+ A K+
Sbjct: 255 TGFAQNAKPQEALEYFDRM-EKSGIRADEVTVAGYISACAQLGASKY--ADRAVQIAQKS 311
Query: 180 EWELNEQ--IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
+ ++ I + L+DMY+KCG ++ A+ VF M +NV S++++I G A G +++AL
Sbjct: 312 GYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLATHGRAQEALD 371
Query: 238 LFE-MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
LF M+ T +KPN +TF G LTAC H+GLVD+GR+ F + + + +EP HY CMVDL
Sbjct: 372 LFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTRDHYTCMVDL 431
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
G+AG L+EA E+I+TM +EP+ +WG+ L AC+ H D+AE + + L ++P+ G
Sbjct: 432 LGRAGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPDIAE-IAAEHLFELEPDIIGN 490
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
+ L+ ++Y+ W G VRKL+ + ++K S
Sbjct: 491 -YILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVS 526
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 136/347 (39%), Gaps = 67/347 (19%)
Query: 18 SILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELP 77
S++ L C NL I +H H+L+ G Y+ T L+ +T G D P
Sbjct: 52 SLISKLDDCI---NLNQIKQIHGHVLRKGLDQSCYILTKLIR--TLTKLGVP---MDPYP 103
Query: 78 ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
R E + RN W+A+I Y G +D + ++
Sbjct: 104 RR-----------------------VIEPVQFRNPFLWTAVIRGYTIEGKFDEAIAMYGC 140
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
M E +TP T A+L C +G + L G+ H + + ++DMY K
Sbjct: 141 M-RKEEITPVSFTFSALLKACGSMGDLNL--GRQFHAQTFRLRGFCFVYVGNTMIDMYVK 197
Query: 198 CGFLKYALMVFELMEERNVIS-------------------------------WTALICGS 226
CG + A VF+ M ER+VIS WTA++ G
Sbjct: 198 CGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESAADLFESLPTKDMVAWTAMVTGF 257
Query: 227 AHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE-YDLEP 285
A ++AL F+ M+ +G++ +E+T G ++AC G + ++ + Y
Sbjct: 258 AQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSD 317
Query: 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
+ ++D++ K G +EEA V +M NV + S + H
Sbjct: 318 HVVIGSALIDMYSKCGNVEEAVNVFVSMN-NKNVFSYSSMILGLATH 363
>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 146/401 (36%), Positives = 232/401 (57%), Gaps = 21/401 (5%)
Query: 11 SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG--- 67
SV + F+ + K+C L +H +K G S +V ++++ Y+
Sbjct: 107 SVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDA 166
Query: 68 ---FARKLF----DELPER------NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVAS 114
F R++F D + ++ + V WN MI GY + G + AR+ F+ MP R+V S
Sbjct: 167 HRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVS 226
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
W+ MIA Y +G + +++FREM E + P+ +T+ +VL S LG+ L +GK H
Sbjct: 227 WNVMIAGYAQSGHFKEAVEVFREMQMAE-VPPNYVTLVSVLPAMSRLGA--LELGKWVHL 283
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
+ V+N +++ + + L+DMYAKCG ++ AL VFE + +RNV++W+ +I G A G ++D
Sbjct: 284 YAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKD 343
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
L FE M+ GV P+++T+ G+L+AC H GLV+EGR +F + LEPRI+HYGCMV
Sbjct: 344 TLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMV 403
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
DL G+AG LEE+ E+I M ++P+ +IW + L ACK H +M +RV + + + +D
Sbjct: 404 DLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAP--HD 461
Query: 355 GGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G + + ++Y WEG +VR +M +VRK G S I
Sbjct: 462 SGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKDPGCSWI 502
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 14/136 (10%)
Query: 201 LKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF-EMMQATGVKPNEMTFTGVLT 259
L YA +F M N S+ LI + DAL +F EM++ V+PN TF V
Sbjct: 61 LDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFK 120
Query: 260 ACVHTGLVDEGRKY------FKMIDEEYDLEPRIQHY---GCMVD---LFGKAGFLEEAY 307
AC + EGR+ F + +E+ + ++ Y G M D LF + F++
Sbjct: 121 ACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCD 180
Query: 308 EV-IRTMRLEPNVIIW 322
+ + R++ +V++W
Sbjct: 181 GIRDKKRRVDGDVVLW 196
>gi|125528817|gb|EAY76931.1| hypothetical protein OsI_04889 [Oryza sativa Indica Group]
Length = 565
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 131/326 (40%), Positives = 203/326 (62%), Gaps = 5/326 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR++FD++P R++ +W+ +I GY K G++ AR+ F+RMP +N+ +W+AMI Y +G
Sbjct: 198 ARRVFDQMPTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVP 257
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L LFREM G+ PD T+ V+S S +GS L ++ K E N+++
Sbjct: 258 KESLALFREM-EAAGIEPDAATMVGVISAASQIGSTEL--AGWVGSYVDKKRIERNDKVL 314
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
T LVDM+AKCG + AL F + + + +TALI G A G+++ AL +FE MQA V
Sbjct: 315 TALVDMHAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVW 374
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+ +TF GVLTAC H GLVD+G Y++ + + Y +E R HY C+VD+ G+AG LEEA+E
Sbjct: 375 PDPITFVGVLTACSHAGLVDKGLDYWEAMVKYYGMERRADHYACVVDMLGRAGRLEEAFE 434
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+++TM + P+ G+ L+ACK H ++AE ++ L ++P N G + ++ ++Y
Sbjct: 435 MVQTMPMGPHPGALGALLSACKTHGNVEIAE-IVANKLFELEPHNTGN-YIMLSNIYAEK 492
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSV 394
E+WE AER+R +M + K GSS+
Sbjct: 493 EQWEEAERIRSVMRTRVPFKQPGSSM 518
>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 766
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 204/327 (62%), Gaps = 5/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR+LF+ +P +N +WNTMI GY+++G++ +AR+FF+RMP R+ SW+A+IA Y +G
Sbjct: 316 ARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYG 375
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ L LF EM +G ++ T + LS C+ + + L +GK HG +VK E +
Sbjct: 376 EEALHLFVEM-KRDGERLNRSTFTSTLSTCAEIAA--LELGKQVHGRVVKAGLESGCYVG 432
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+ MY KCG + A +VFE +EE+ V+SW +I G A G+ ++AL LFE M+ TG+
Sbjct: 433 NALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGIL 492
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+++T GVL+AC HTGLVD+G +YF + ++Y + +HY CM+DL G+AG L++A
Sbjct: 493 PDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQN 552
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+++ M EP+ WG+ L A + H ++ E+ K M +P+N G++ L+ +LY +
Sbjct: 553 LMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEM-EPDN-SGMYVLLSNLYAAS 610
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
+W R+R M ++ V+K G S +
Sbjct: 611 GRWGDVGRMRLRMRDRGVKKVPGYSWV 637
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 89/374 (23%), Positives = 168/374 (44%), Gaps = 45/374 (12%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFIS-HVYVATSLLH 59
++LF+ M R+S S S ++ C + + L + +S +V ++ + +
Sbjct: 69 LRLFNSMPRRS----SISWNAMISGCLSNDKFYLARQLFEKMPTRDLVSWNVMISGCVRY 124
Query: 60 EYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
+ AR LFD++PER+ V+WN M+ GY+++G V EA++ F+ MP +N SW+ M+
Sbjct: 125 R----NLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGML 180
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAV--------------LSGCSHLGSVG 165
AAY+ G + +LF E ++ + M G V + +
Sbjct: 181 AAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNT 240
Query: 166 LLMGKSAHGFIVKNEWELNEQIA------TILVDMYAKCGFLKYALMVFELMEERNVISW 219
++ G + +G +++ + E T +V Y + G L A VF+ M E+N +SW
Sbjct: 241 MISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSW 300
Query: 220 TALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE 279
A+I G + A LFE M V ++ ++T G + + R +F + +
Sbjct: 301 NAIIAGYVQCKRMDQARELFEAMPCQNVS----SWNTMITGYAQNGDIAQARNFFDRMPQ 356
Query: 280 EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEP---NVIIWGSFLAACKEHKQFD 336
+ + ++ + ++G+ EEA + M+ + N + S L+ C E +
Sbjct: 357 RDSIS-----WAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALE 411
Query: 337 MAE----RVIKQAL 346
+ + RV+K L
Sbjct: 412 LGKQVHGRVVKAGL 425
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 129/304 (42%), Gaps = 57/304 (18%)
Query: 82 VTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISN 141
V WN I + ++G A F MP R+ SW+AMI+ L+ + +LF +M
Sbjct: 50 VKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMP-- 107
Query: 142 EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFL 201
T D ++ ++SGC + L
Sbjct: 108 ---TRDLVSWNVMISGCVRYRN-------------------------------------L 127
Query: 202 KYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261
+ A ++F+ M ER+V+SW A++ G A GY ++A +F+ M N +++ G+L A
Sbjct: 128 RAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK----NSISWNGMLAAY 183
Query: 262 VHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVII 321
V G +++ R+ F E + + + CM+ + K L +A + M E + +
Sbjct: 184 VQNGRIEDARRLF-----ESKADWELISWNCMMGGYVKRNRLVDARGIFDRM-PERDEVS 237
Query: 322 WGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLM 381
W + ++ ++ + A+R+ +++ P D +T + Y N + A RV M
Sbjct: 238 WNTMISGYAQNGELLEAQRLFEES-----PVRDVFTWTAMVSGYVQNGMLDEARRVFDGM 292
Query: 382 LNQN 385
+N
Sbjct: 293 PEKN 296
>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
Length = 789
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 135/395 (34%), Positives = 228/395 (57%), Gaps = 8/395 (2%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF+QM V SD F++ +L C ++++ LH+H + G S V VA +L+ Y
Sbjct: 334 LFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYA 393
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
A F+ +P R+ ++W MI +S++G+V +AR++F++MP RNV SW++M+A
Sbjct: 394 KCGDVWKANHAFELMPIRDIISWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLAT 453
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ G ++ GLK++ +M+ EG+ D +T +S C+ L L++G K +
Sbjct: 454 YMQRGYWEEGLKVYIQML-REGVKTDWITFSTSISACADLAV--LILGNQILAQAEKLGF 510
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
N +A +V MY++CG ++ A +F + +N++SW A++ G A G + +FE
Sbjct: 511 SSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEK 570
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M G P+++++ VL+ C H+G V EG+ YF + +++ + P +H+ CMVDL G+AG
Sbjct: 571 MLNIGNVPDQISYVSVLSGCSHSGFVSEGQYYFLSMTKDHGISPMSEHFVCMVDLLGRAG 630
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG-GVFTL 360
LE+A +I M +PN IWG+ LAAC+ H +AE +K L + + +G G + L
Sbjct: 631 QLEQAKNLINQMPFKPNAAIWGALLAACRIHGNTKLAELAVKNLLEL---DAEGPGSYCL 687
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y+ + K +G VRKLM ++ VRK G S I
Sbjct: 688 LANIYSESGKIQGVTNVRKLMRDKGVRKNPGCSWI 722
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 116/356 (32%), Positives = 165/356 (46%), Gaps = 35/356 (9%)
Query: 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFDELPERNA 81
+K+ L + LH K F V TS+L Y+ + FA+K+F P +
Sbjct: 121 IKASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSL 180
Query: 82 VTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISN 141
WN+MI GYSK G+V +A + F +MP R+ SW+ MI+ G L F EM N
Sbjct: 181 FCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMW-N 239
Query: 142 EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFL 201
+G P+ MT +VLS C+ + L G H IV+ E L+ L+DMYAKCG L
Sbjct: 240 QGFRPNSMTYASVLSACTSI--YDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRL 297
Query: 202 KYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261
+ A VF+ + E N +SWT+LI G A G+ E+AL LF M+ V ++ T VL C
Sbjct: 298 ESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVC 357
Query: 262 VHTGLVDEGRK-----------------------YFKMID-----EEYDLEP--RIQHYG 291
+ + G + Y K D ++L P I +
Sbjct: 358 LSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWT 417
Query: 292 CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALR 347
M+ F +AG +E+A E M E NVI W S LA + ++ +V Q LR
Sbjct: 418 AMITAFSQAGDVEKAREYFDKMP-ERNVISWNSMLATYMQRGYWEEGLKVYIQMLR 472
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 98/375 (26%), Positives = 165/375 (44%), Gaps = 72/375 (19%)
Query: 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGF---ARKLFDELPER 79
+K C ++ + LH+ ++ +G S +++ LL+ Y ++ G A ++F +
Sbjct: 11 MKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMY--SNCGLISDAYRVFGGIMFP 68
Query: 80 NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI 139
N +WNTMI G++ SG + EA FE+MP R+ SW++M++ Y + G + +K
Sbjct: 69 NVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKAS---- 124
Query: 140 SNEGLTPDQMTIGAVLSGCSHLGSVGLL-MGKSAHGFIVKNEWELNEQIATILVDMYAKC 198
GS+G L + HGF K ++ ++ + T ++DMY KC
Sbjct: 125 ----------------------GSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKC 162
Query: 199 GFL-------------------------------KYALMVFELMEERNVISWTALICGSA 227
G + K AL +F M ER+ +SW +I +
Sbjct: 163 GAMDFAQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILS 222
Query: 228 HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRI 287
G+ + L+ F M G +PN MT+ VL+AC ++ G I +EP +
Sbjct: 223 QHGFGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARI---VRMEPCL 279
Query: 288 QHY-GC-MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQA 345
Y GC ++D++ K G LE A +V + E N + W S + + F V+
Sbjct: 280 DVYAGCGLIDMYAKCGRLESARQVFDGLT-EHNAVSWTSLIGGVAQ-AGFQEEALVLFNQ 337
Query: 346 LRMVKPENDGGVFTL 360
+R V +D FTL
Sbjct: 338 MREVPVASDQ--FTL 350
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 90/366 (24%), Positives = 153/366 (41%), Gaps = 68/366 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ F +M Q +S + +L +CT +L HLH+ I+++ VY L+
Sbjct: 231 LNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDM 290
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y AR++FD L E NAV+W ++I G +++G EA F +M VAS
Sbjct: 291 YAKCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVAS----- 345
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
DQ T+ VL C L + +G+ H +
Sbjct: 346 ---------------------------DQFTLATVLGVC--LSQKDISIGEQLHAHTITR 376
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFEL----------------------------- 210
+ + +A LV MYAKCG + A FEL
Sbjct: 377 GLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQAGDVEKAREYF 436
Query: 211 --MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
M ERNVISW +++ RGY E+ L ++ M GVK + +TF+ ++AC ++
Sbjct: 437 DKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFSTSISACADLAVLI 496
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
G + E+ + +V ++ + G +EEA ++ ++ ++ N++ W + +A
Sbjct: 497 LGNQILAQA-EKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMK-NLVSWNAMMAG 554
Query: 329 CKEHKQ 334
++ Q
Sbjct: 555 YAQNGQ 560
>gi|115441777|ref|NP_001045168.1| Os01g0912900 [Oryza sativa Japonica Group]
gi|20161377|dbj|BAB90301.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113534699|dbj|BAF07082.1| Os01g0912900 [Oryza sativa Japonica Group]
gi|125573076|gb|EAZ14591.1| hypothetical protein OsJ_04514 [Oryza sativa Japonica Group]
Length = 533
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 131/325 (40%), Positives = 202/325 (62%), Gaps = 5/325 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR++FD++P R++ +W+ +I GY K G++ AR+ F+RMP +N+ +W+AMI Y +G
Sbjct: 198 ARRVFDQMPTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVP 257
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L LFREM G+ PD T+ V+S S +GS L ++ K E N+++
Sbjct: 258 KESLALFREM-EAAGIEPDAATMVGVISAASQIGSTEL--AGWVGSYVDKKRIERNDKVL 314
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
T LVDM+AKCG + AL F + + + +TALI G A G+++ AL +FE MQA V
Sbjct: 315 TALVDMHAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVW 374
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+ +TF GVLTAC H GLVD+G Y++ + + Y +E R HY C+VD+ G+AG LEEA+E
Sbjct: 375 PDPITFVGVLTACSHAGLVDKGLDYWEAMVKYYGMERRADHYACVVDMLGRAGRLEEAFE 434
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+++TM + P+ G+ L+ACK H ++AE ++ L ++P N G + ++ ++Y
Sbjct: 435 MVQTMPMGPHPGALGALLSACKTHGNVEIAE-IVANKLFELEPHNTGN-YIMLSNIYAEK 492
Query: 369 EKWEGAERVRKLMLNQNVRKARGSS 393
E+WE AER+R +M + K GSS
Sbjct: 493 EQWEEAERIRSVMRTRLPFKQPGSS 517
>gi|255586940|ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223525897|gb|EEF28314.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 131/360 (36%), Positives = 220/360 (61%), Gaps = 6/360 (1%)
Query: 37 HLHSHILKLGFISHVYVATSLLHEYVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSG 95
LH ++KLG + ++ ++L YV F ARK+FD + + V WNTMI G +K G
Sbjct: 143 QLHGKMIKLGLENDSFIRNTILFMYVNCGFTSEARKVFDRGMDFDIVAWNTMIMGVAKCG 202
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155
V E+R F++M LRN SW++MI+ Y+ G + L+LF++M E + P + T+ ++L
Sbjct: 203 LVDESRRLFDKMSLRNAVSWNSMISGYVRNGRFFDALELFQKM-QVERIEPSEFTMVSLL 261
Query: 156 SGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERN 215
+ C+ LG++ G+ H ++VK ++ELN + T ++DMY+KCG + A+ VF+ R
Sbjct: 262 NACACLGAIR--QGEWIHDYMVKKKFELNPIVVTAIIDMYSKCGSIDKAVQVFQSAPRRG 319
Query: 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275
+ W ++I G A G +AL LF ++Q++ ++P++++F VLTAC HTG+VD+ + YF
Sbjct: 320 LSCWNSMILGLAMNGQENEALQLFSVLQSSDLRPDDVSFIAVLTACDHTGMVDKAKDYFL 379
Query: 276 MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQF 335
++ ++Y ++P I+H+ CMVD+ G+AG LEEA E+IR+M ++P+ IIWGS L +C ++
Sbjct: 380 LMRDKYKIKPGIKHFSCMVDVLGRAGLLEEAEELIRSMHVDPDAIIWGSLLWSCCKYGNI 439
Query: 336 DMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
MA+R + + E+ F L+ + Y +E A + R + ++ K G S I
Sbjct: 440 KMAKRAANHLIELNPSESSS--FVLVANAYAAANNFEEALKERLTLKENHIGKEPGCSCI 497
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 140/311 (45%), Gaps = 28/311 (9%)
Query: 14 SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FAR 70
SD + + K+CT +L IH S ++K G A+ +L + + G +A
Sbjct: 20 SDQTYLSMLDKNCTTMKDLKKIH---SQLIKTGLAKDTNAASRIL-AFCASPAGDINYAY 75
Query: 71 KLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA-----SWSAMIAAYLNA 125
+F ++ N WNT+I+G+S+S + + M L + ++ ++ A+
Sbjct: 76 LVFVQIQNPNIFAWNTIIRGFSRSSVPQNSISLYIDMLLTSPVQPQRLTYPSVFKAFAQL 135
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVL---SGCSHLGSVGLLMGKSAHGFIVKNEWE 182
G +L +MI GL D +L C + + IV W
Sbjct: 136 DLASEGAQLHGKMI-KLGLENDSFIRNTILFMYVNCGFTSEARKVFDRGMDFDIVA--W- 191
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
N I + AKCG + + +F+ M RN +SW ++I G G DAL LF+ M
Sbjct: 192 -NTMIMGV-----AKCGLVDESRRLFDKMSLRNAVSWNSMISGYVRNGRFFDALELFQKM 245
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGR-KYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
Q ++P+E T +L AC G + +G + M+ ++++L P + ++D++ K G
Sbjct: 246 QVERIEPSEFTMVSLLNACACLGAIRQGEWIHDYMVKKKFELNPIV--VTAIIDMYSKCG 303
Query: 302 FLEEAYEVIRT 312
+++A +V ++
Sbjct: 304 SIDKAVQVFQS 314
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 96/209 (45%), Gaps = 14/209 (6%)
Query: 144 LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIAT-ILVDMYAKCGFLK 202
L DQ + + C+ + + K H ++K + A+ IL + G +
Sbjct: 18 LISDQTYLSMLDKNCTTMKDL-----KKIHSQLIKTGLAKDTNAASRILAFCASPAGDIN 72
Query: 203 YALMVFELMEERNVISWTALICGSAHRGYSEDALSLF-EMMQATGVKPNEMTFTGVLTAC 261
YA +VF ++ N+ +W +I G + ++++SL+ +M+ + V+P +T+ V A
Sbjct: 73 YAYLVFVQIQNPNIFAWNTIIRGFSRSSVPQNSISLYIDMLLTSPVQPQRLTYPSVFKAF 132
Query: 262 VHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI-RTMRLEPNV 319
L EG + + KMI + + I++ ++ ++ GF EA +V R M + +
Sbjct: 133 AQLDLASEGAQLHGKMIKLGLENDSFIRN--TILFMYVNCGFTSEARKVFDRGMDFD--I 188
Query: 320 IIWGSFLAACKEHKQFDMAERVI-KQALR 347
+ W + + + D + R+ K +LR
Sbjct: 189 VAWNTMIMGVAKCGLVDESRRLFDKMSLR 217
>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
Length = 608
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 131/384 (34%), Positives = 216/384 (56%), Gaps = 5/384 (1%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGF-ARKLF 73
D F + + + +L + LH+H + + V +SL+ Y ARK+F
Sbjct: 102 DHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSADNVVKSSLIDMYCKCGVPQDARKVF 161
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
D + +N+V W +I GY+ +G EA D F+ MP + +W+A+I+ ++ AG Y +
Sbjct: 162 DSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPAHGLFTWTALISGFVKAGNYTGAMG 221
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
LF EM ++ D + V+ G + L + L++G+ HGF+++ + + + LVD
Sbjct: 222 LFVEMRRDDIRIHDAFVLATVIGGAADLAA--LVLGRQLHGFVMRLGFLSSMIVGNALVD 279
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
MY+KC + A VFE + R+VISWT ++ G A G +E+ +L+ M G+KPNE+T
Sbjct: 280 MYSKCSDIHSAREVFEGITVRDVISWTTILVGEAQHGRAEEVFALYNRMLLAGMKPNEVT 339
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
F G++ AC H GLV +GR+ F + EY ++P +QHY C +DL ++G+L EA ++I TM
Sbjct: 340 FVGLIYACSHAGLVQKGRQLFDSMKREYGMKPGVQHYTCYLDLLSRSGYLSEAEKLITTM 399
Query: 314 RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEG 373
EP+ WG+ L+ACK+H M RV L + +P+ D + L+ ++Y +N KW+
Sbjct: 400 PYEPDEATWGALLSACKKHNDTQMCLRVADNLLEL-RPK-DPSTYILLSNVYAVNCKWDS 457
Query: 374 AERVRKLMLNQNVRKARGSSVISS 397
+VRK+M +RK G S + +
Sbjct: 458 VAKVRKIMAEMEIRKVPGYSWVEA 481
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 102/191 (53%), Gaps = 10/191 (5%)
Query: 75 ELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKL 134
+LP A+ ++ Y++S + +AR F+ P R++ +SA++AA ++ + L L
Sbjct: 34 DLPSAPAL----LVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAVSHSSDPELVLPL 89
Query: 135 FREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDM 194
R M+S++ L PD + ++ S L S L +G+ H + + + + + L+DM
Sbjct: 90 LRRMLSDDALRPDHFVLASLASAAGRLRS--LRLGRQLHAHFAASPYSADNVVKSSLIDM 147
Query: 195 YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTF 254
Y KCG + A VF+ + +N + WTALI G A G + +AL LF+ M A G+ T+
Sbjct: 148 YCKCGVPQDARKVFDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPAHGL----FTW 203
Query: 255 TGVLTACVHTG 265
T +++ V G
Sbjct: 204 TALISGFVKAG 214
>gi|218202317|gb|EEC84744.1| hypothetical protein OsI_31741 [Oryza sativa Indica Group]
Length = 563
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 142/397 (35%), Positives = 219/397 (55%), Gaps = 28/397 (7%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF + R D + L C + LHSH K G SH V L+H
Sbjct: 63 LRLFDHLLRSGADPDHVAYALALGRCARGRDHRAAAQLHSHAAKRGAASHRRVCNGLIHA 122
Query: 61 YVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y V S ARK+FD E +AV WN++++GY+ +G+V R+FF M R+ SW+ +I
Sbjct: 123 YAVCGSLLDARKVFDRGHEGDAVAWNSLLRGYAAAGDVNALREFFVGMQARDTVSWNTII 182
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A + G Y+ + +FREM+++ PD++T L GK
Sbjct: 183 AWCVENGEYEEAIAVFREMLASMECLPDRVT---------------LFPGKGI------- 220
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFE-LMEERNVISWTALICGSAHRGYSEDALSL 238
E+ E++++ L++MY+KC ++ A+ VFE L + NV +W A++ G G SE AL L
Sbjct: 221 --EVEERLSSALINMYSKCACIEGAVHVFENLGAQMNVDTWNAMLAGFTANGCSEKALEL 278
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F M+ TG+ PN++TF VL AC H G V+EG F+ + + Y +EP I HYGCMVDLF
Sbjct: 279 FARMEITGLVPNKITFNTVLNACSHGGFVEEGMGCFERMTKVYGIEPDIAHYGCMVDLFC 338
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG ++A ++I+ M ++P+ +W + + ACK H+ F++ R L P ND +
Sbjct: 339 RAGLFDKAEKMIQMMPMKPDAAVWKALVGACKTHRNFELG-RKAGHMLIEAAP-NDHAGY 396
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y ++ W G +VRKLML++ V+K GSS I
Sbjct: 397 VLLSNIYALDGNWTGVHKVRKLMLDRGVQKVPGSSSI 433
>gi|356527575|ref|XP_003532384.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61800-like [Glycine max]
Length = 577
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 138/397 (34%), Positives = 223/397 (56%), Gaps = 7/397 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LFS + R S+P D + +LK+ ++L++ LHS LK G + ++ +L+
Sbjct: 94 LHLFSTLRRLSLPPDFHTFPFVLKASAQLHSLSLAQSLHSQALKFGLLPDLFSLNTLIGV 153
Query: 61 YVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + A KLF E P + V++N +I G K+ + AR+ F+ MP+R+ SW MI
Sbjct: 154 YSIHHRVNDAHKLFYECPHGDVVSYNALIHGLVKTRQISRARELFDEMPVRDEISWGTMI 213
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A Y + + ++LF EM+ E + PD + + +VLS C+ LG L G H +I +N
Sbjct: 214 AGYSHLKLCNQAIELFNEMMRLE-VKPDNIALVSVLSACAQLGE--LEQGSIVHDYIKRN 270
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
++ +AT LVD+YAKCG ++ A VFE E+ V +W A++ G A G L F
Sbjct: 271 RIRVDSYLATGLVDLYAKCGCVETARDVFESCMEKYVFTWNAMLVGFAIHGEGSMVLEYF 330
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M + GVKP+ +T GVL C H GLV E R+ F ++ Y ++ +HYGCM D+ +
Sbjct: 331 SRMVSEGVKPDGVTLLGVLVGCSHAGLVLEARRIFDEMENVYGVKREGKHYGCMADMLAR 390
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG +EE E+++ M +V WG L C+ H ++A++ +Q + +KPE DGGV++
Sbjct: 391 AGLIEEGVEMVKAMPSGGDVFAWGGLLGGCRIHGNVEVAKKAAQQVME-IKPE-DGGVYS 448
Query: 360 LICDLYTMNEKWEGAERVRK-LMLNQNVRKARGSSVI 395
++ ++Y E+W+ +VR+ L N+ +K G S+I
Sbjct: 449 VMANIYAHTEQWDDLVKVRRSLSANKRAKKITGRSLI 485
>gi|413938708|gb|AFW73259.1| hypothetical protein ZEAMMB73_606431 [Zea mays]
Length = 488
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 141/383 (36%), Positives = 213/383 (55%), Gaps = 10/383 (2%)
Query: 18 SILHILKSCTHFNNLTV-IHHLHSHILKLG---FISHVYVATSLLHEYV-VTSFGFARKL 72
+++ L +C + +H+ ++K G +SHV TSL+ Y + ARK+
Sbjct: 62 ALMPALAACARLPSAVAEAEQIHALLVKSGGSRAVSHVQAFTSLIRAYARLGRVCDARKV 121
Query: 73 FDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGL 132
FD + +R VTWN ++ + G++ A + F +MP RN SW+ +I+ + G +
Sbjct: 122 FDGMADRTVVTWNVLLDALIRDGDLDAAWEVFVKMPQRNAVSWNTIISGFARNGWAPVAV 181
Query: 133 KLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILV 192
LF EM GL PD+ T+ +S +G L +GKSAHG++++ E+ L+ + LV
Sbjct: 182 DLFIEMTVAYGLAPDEATMVGFVSAVRDIGL--LAIGKSAHGYVLRREFSLDGPLGVALV 239
Query: 193 DMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEM 252
MY +CG + A F + +NV WT+LI G A G E+AL LF M+ G++PN +
Sbjct: 240 SMYTRCGSMGAAHSCFLSVTTKNVEHWTSLIAGFAAHGQPENALRLFVEMRQVGIEPNGV 299
Query: 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312
TF VL+AC H GLVDEG KYF ++ + P IQHYGC+VDL G+AGFL+EA+ +
Sbjct: 300 TFVAVLSACSHGGLVDEGFKYFDLM-RSMGIRPMIQHYGCLVDLLGRAGFLKEAFNLASN 358
Query: 313 MRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWE 372
+ +P +IW S LAAC+ H +MAE + L KP + G + L+ + Y E+WE
Sbjct: 359 LPEDPGFVIWSSLLAACRSHGNVEMAE-LTASKLAEAKPSH-GSSYVLLSNTYARAEQWE 416
Query: 373 GAERVRKLMLNQNVRKARGSSVI 395
++R R+ M V K G S I
Sbjct: 417 DSKRTRRRMEEHRVAKKPGLSWI 439
>gi|357150569|ref|XP_003575504.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 548
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 139/430 (32%), Positives = 229/430 (53%), Gaps = 37/430 (8%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY- 61
LF M R + F++ +LKS + + +H ++K G S ++V +LL Y
Sbjct: 95 LFMFMLRSGPRPNGFTVSSVLKSLSKLRAAHQVCQVHGFLVKAGLASSLHVGATLLDSYG 154
Query: 62 VVTSFGFARKLFDELP-------------------------------ERNAVTWNTMIKG 90
+ AR++FDE+P ER++++WNT++ G
Sbjct: 155 NLCRVKDARRVFDEMPRSNVVVGNAMVSGYVKAGDVEAARQVFDGMVERDSISWNTLMSG 214
Query: 91 YSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMT 150
Y + G+ ARD F+ MP RNV SW+ MI+A G + + +F +M PD T
Sbjct: 215 YLRRGDAGLARDLFDEMPQRNVNSWNMMISACSEVGLWADSVAVFNQM-RFMSFRPDAAT 273
Query: 151 IGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFEL 210
+ ++S C+ LG L + + +G + K E+N + LVDM+AKCG A ++F
Sbjct: 274 MAVLMSACAQLGF--LSVARQVYGLLRKGCVEMNCHVHNSLVDMFAKCGCFSEAHLLFAE 331
Query: 211 MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
M+ ++V+S+ ++ AH G+ +DAL LFE M G++P+ +TF GVL+AC H GLVD G
Sbjct: 332 MDPKDVVSYNVMVSALAHHGHGKDALKLFEQMIEGGLQPDAVTFLGVLSACAHAGLVDSG 391
Query: 271 RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330
+ YF+ + Y +E HY CMVDL+G+ G +EEA+ ++ M ++P+ IWG+ L AC+
Sbjct: 392 KYYFETMGTTYAIEKSADHYACMVDLYGRVGLIEEAHYFVKIMPVKPHAGIWGALLNACR 451
Query: 331 EHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKAR 390
+H D+ E ++ +R ++P N G + L+ + +++W+ VR+LM + K
Sbjct: 452 KHCNIDVGEVAARELIR-IEPMNPGN-YVLLSNTLAWSQQWDAVGDVRQLMRGNGIDKNT 509
Query: 391 GSSVISSLSV 400
G S + SV
Sbjct: 510 GFSWVEVESV 519
>gi|297824523|ref|XP_002880144.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325983|gb|EFH56403.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 555
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 131/327 (40%), Positives = 203/327 (62%), Gaps = 6/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR+LFDE+ + +TW TMI GY S ++ AR F+ MP RN+ SW+ MI Y
Sbjct: 195 ARRLFDEMTHKTVITWTTMIHGYCNSNDIDSARKLFDAMPERNLVSWNTMIGGYCQNKQP 254
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
++LF+EM + L PD +TI +VL S G++ L G+ H F+ + + ++
Sbjct: 255 QEAIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSL--GEWCHCFVQRKNLDKKVKVC 312
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
T ++DMY+KCG ++ A +F+ M E+ V SW A+I G A G + AL LF M A K
Sbjct: 313 TAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNAHAALDLFLTM-AKEEK 371
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+E+T V++AC H GLV+EGRK+F+M+ ++ L +I+HYGCMVDL G+AG L++A
Sbjct: 372 PDEITMLAVISACNHGGLVEEGRKWFQMM-RKFGLNAKIEHYGCMVDLLGRAGNLKQAEH 430
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+I M +PN II SFL+AC ++K + AER++K+A+ + +P+NDG + L+ +LY +
Sbjct: 431 LITNMPFKPNGIILSSFLSACGQYKDIERAERILKKAVEL-EPQNDGN-YVLLRNLYAAD 488
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
++W+ V+ +M +K G S+I
Sbjct: 489 KRWDDFGMVKNMMRKNEAKKEVGCSLI 515
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 121/257 (47%), Gaps = 14/257 (5%)
Query: 100 ARDFFERMPLRNVASW-SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGC 158
AR F++ P R + ++MI AYL Y+ +R++ L PD T + C
Sbjct: 29 ARKLFDQRPHREDSFLCNSMIKAYLETRHYNDSFAFYRDLRKETCLAPDNFTFTTMTKSC 88
Query: 159 SHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVIS 218
+ S+ + G H I ++ + + ++T +VDMYAK G + A VF+ M +R+ +S
Sbjct: 89 TL--SMCVYQGLQLHSQIWRSGFCADMYVSTGVVDMYAKFGKMGCARNVFDEMPQRSEVS 146
Query: 219 WTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMID 278
WTALICG G + A LF+ M + + + ++ V +G + R+ F +
Sbjct: 147 WTALICGYVRFGELDLASKLFDQMPQV---KDVVIYNAMMDGFVKSGDMTSARRLFDEMT 203
Query: 279 EEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
+ + + M+ + + ++ A ++ M E N++ W + + ++KQ A
Sbjct: 204 HK-----TVITWTTMIHGYCNSNDIDSARKLFDAMP-ERNLVSWNTMIGGYCQNKQPQEA 257
Query: 339 ERVIK--QALRMVKPEN 353
R+ + QA + P++
Sbjct: 258 IRLFQEMQATTSLDPDD 274
>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g14050, mitochondrial-like [Cucumis sativus]
Length = 611
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 219/383 (57%), Gaps = 7/383 (1%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLF 73
D F I+++C+ L + +H+ + F V +SL+ Y AR +F
Sbjct: 104 DHFVFACIVRACSSLGYLRLGKQVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDEARAVF 163
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
D + +N+V+W +MI GY++SG CEA D F + P+RN+ SW+A+I+ + +G
Sbjct: 164 DSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFS 223
Query: 134 LFREMISNEGLT-PDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILV 192
LF EM EG+ D + + +V+ GC++L + L GK HG ++ +E I+ LV
Sbjct: 224 LFNEM-RREGIDIVDPLVLSSVVGGCANLALLEL--GKQIHGLVIALGFESCLFISNALV 280
Query: 193 DMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEM 252
DMYAKC + A +F M ++VISWT++I G+A G +E+AL+L++ M + +KPNE+
Sbjct: 281 DMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEV 340
Query: 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312
TF G+L AC H GLV GR+ F+ + +Y + P +QHY C++DL ++G L+EA ++
Sbjct: 341 TFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDK 400
Query: 313 MRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWE 372
+ +P+ W S L+AC H +M R+ + L + KPE D + L+ ++Y E W
Sbjct: 401 IPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDL-KPE-DPSTYILLSNVYAGAEMWG 458
Query: 373 GAERVRKLMLNQNVRKARGSSVI 395
+VRKLM + VRK G S I
Sbjct: 459 SVSKVRKLMSSMEVRKEPGYSSI 481
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/365 (23%), Positives = 151/365 (41%), Gaps = 67/365 (18%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPER 79
LH L+ C + + LHS I+K GF ++
Sbjct: 7 LHQLQLCARRQSASAAGELHSQIIKAGF------------------------------DK 36
Query: 80 NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI 139
+++ NT++ Y K G + +A F+ MP R+ SW++++ A+ A L + M
Sbjct: 37 SSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKALIPRRTLSMLNTMF 96
Query: 140 SNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG 199
+++GL PD ++ CS LG L +GK H + + + +E + + L+DMY KCG
Sbjct: 97 THDGLQPDHFVFACIVRACSSLGY--LRLGKQVHARFMLSXFCDDEVVKSSLIDMYTKCG 154
Query: 200 FLKYALMVFELM-------------------------------EERNVISWTALICGSAH 228
A VF+ + RN+ SWTALI G
Sbjct: 155 QPDEARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQ 214
Query: 229 RGYSEDALSLFEMMQATGVK-PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRI 287
G+ + SLF M+ G+ + + + V+ C + L++ G++ ++ E +
Sbjct: 215 SGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLV-IALGFESCL 273
Query: 288 QHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ-AL 346
+VD++ K + A ++ M +VI W S + +H + + A + + L
Sbjct: 274 FISNALVDMYAKCSDILAAKDIFYRMP-RKDVISWTSIIVGTAQHGKAEEALTLYDEMVL 332
Query: 347 RMVKP 351
+KP
Sbjct: 333 SRIKP 337
>gi|225450622|ref|XP_002278152.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09190
[Vitis vinifera]
Length = 485
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 143/397 (36%), Positives = 227/397 (57%), Gaps = 11/397 (2%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LFSQM + + D F+ +LKSC+ + + +H ++ +GF + ++ Y
Sbjct: 94 LFSQMKNRGIWPDEFTFAPLLKSCSGICDNRIGKGVHGVVIVVGFERFSSIRIGIIDLY- 152
Query: 63 VTSFGF---ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
TS G A+K+FDE+ +R+ + WN MI+G+ K G++ F +M R+V SW++MI
Sbjct: 153 -TSCGRMEDAKKVFDEMLDRDVIVWNMMIRGFCKVGDIEMGFRLFRQMRDRSVVSWNSMI 211
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A +G L+LFREM + G PD T+ +L C+ LG+V + G+ H + +
Sbjct: 212 AGLEQSGRDGEALELFREMW-DHGFEPDDATVVTILPVCARLGAVDV--GEWIHSYAESS 268
Query: 180 EWELN-EQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ + LVD Y KCG L+ A VF M ++NV+SW A+I G G E L
Sbjct: 269 RLLRDFISVGNSLVDFYCKCGILETAWRVFNEMPQKNVVSWNAMISGLTFNGKGELGADL 328
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
FE M GV+PN+ TF GVL+ C H GLV+ GR F + ++ +EP+++H+GCMVDL
Sbjct: 329 FEEMINKGVRPNDATFVGVLSCCAHAGLVERGRNLFTSMTVDHKMEPKLEHFGCMVDLLA 388
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+ G +EEA +++RTM + PN ++WGS L+A + AE +K+ + + +P N G +
Sbjct: 389 RNGCMEEARDLVRTMPMRPNAVLWGSLLSAYRTIGDVKHAECAVKELIEL-EPWNSGN-Y 446
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y + KW+ E+VR LM +N+RK G S++
Sbjct: 447 VLLSNVYAEDGKWDEVEKVRALMKEKNIRKNPGQSMV 483
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 88/367 (23%), Positives = 149/367 (40%), Gaps = 76/367 (20%)
Query: 33 TVIHHLHSHILKLGFISHVYVATSLLHEYV-----VTSFGFARKLFDELPERNAVTWNTM 87
T + +H+HIL+ H++ + +L ++ + G+A +F + N + +N+M
Sbjct: 23 TQLPQIHAHILR----HHLHQSNQILSHFISVCGALDKMGYANLVFHQTQNPNLLLFNSM 78
Query: 88 IKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD 147
IKGYS G P N L LF +M N G+ PD
Sbjct: 79 IKGYSLCG------------PSEN-------------------SLLLFSQM-KNRGIWPD 106
Query: 148 QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMV 207
+ T +L CS G +GK HG ++ +E I ++D+Y CG ++ A V
Sbjct: 107 EFTFAPLLKSCS--GICDNRIGKGVHGVVIVVGFERFSSIRIGIIDLYTSCGRMEDAKKV 164
Query: 208 FE-------------------------------LMEERNVISWTALICGSAHRGYSEDAL 236
F+ M +R+V+SW ++I G G +AL
Sbjct: 165 FDEMLDRDVIVWNMMIRGFCKVGDIEMGFRLFRQMRDRSVVSWNSMIAGLEQSGRDGEAL 224
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
LF M G +P++ T +L C G VD G + L I +VD
Sbjct: 225 ELFREMWDHGFEPDDATVVTILPVCARLGAVDVGEWIHSYAESSRLLRDFISVGNSLVDF 284
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQAL-RMVKPENDG 355
+ K G LE A+ V M + NV+ W + ++ + + ++ + ++ + + V+P +
Sbjct: 285 YCKCGILETAWRVFNEMP-QKNVVSWNAMISGLTFNGKGELGADLFEEMINKGVRPNDAT 343
Query: 356 GVFTLIC 362
V L C
Sbjct: 344 FVGVLSC 350
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 102/236 (43%), Gaps = 46/236 (19%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHI----LKLGFISHVYVATS 56
++LF +M D +++ IL C + V +HS+ L FIS V S
Sbjct: 224 LELFREMWDHGFEPDDATVVTILPVCARLGAVDVGEWIHSYAESSRLLRDFIS---VGNS 280
Query: 57 LLHEYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASW 115
L+ Y A ++F+E+P++N V+WN MI G + +G
Sbjct: 281 LVDFYCKCGILETAWRVFNEMPQKNVVSWNAMISGLTFNGK------------------- 321
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH-G 174
+ G LF EMI N+G+ P+ T VLS C+H G V G++
Sbjct: 322 ------------GELGADLFEEMI-NKGVRPNDATFVGVLSCCAHAGLVE--RGRNLFTS 366
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER-NVISWTALICGSAHR 229
V ++ E + +VD+ A+ G ++ A + M R N + W +L+ SA+R
Sbjct: 367 MTVDHKMEPKLEHFGCMVDLLARNGCMEEARDLVRTMPMRPNAVLWGSLL--SAYR 420
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 138/395 (34%), Positives = 224/395 (56%), Gaps = 35/395 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF +M SV + +++++L +C +L +H +I + G H + ++L+
Sbjct: 223 IKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDV 282
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
Y K G ARD F +MP +N+ W+ MI
Sbjct: 283 YC------------------------------KCGCYPLARDLFNKMPEKNLFCWNIMIN 312
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
++ Y+ L LF EM G+ D++T+ ++L C+HLG++ L GK H +I K +
Sbjct: 313 GHVEDSDYEEALSLFNEM-QLSGVKGDKVTMASLLIACTHLGALEL--GKWLHVYIEKEK 369
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
E++ + T LVDMYAKCG ++ A+ VF+ M E++V++WTALI G A G AL LF
Sbjct: 370 IEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFH 429
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
MQ + VKP+ +TF GVL AC H GLV+EG YF + +Y ++P I+HYGCMVD+ G+A
Sbjct: 430 EMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRA 489
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G + EA ++I+ M + P+ + L+AC+ H +AER +Q + + P+N GG + L
Sbjct: 490 GRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIEL-DPKN-GGTYVL 547
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y+ + WE A+++R+LM+ +N++K G S I
Sbjct: 548 LSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAI 582
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 100/333 (30%), Positives = 153/333 (45%), Gaps = 42/333 (12%)
Query: 3 LFSQ-MHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
LF Q M Q + D F+ + KSC L LH H KLGF S Y+
Sbjct: 126 LFYQLMMLQGLDPDRFTFPSLFKSC---GVLCEGKQLHCHSTKLGFASDAYIQ------- 175
Query: 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
NT++ YS G + AR F++M ++V SW+ MI A
Sbjct: 176 -----------------------NTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGA 212
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y +KLFR M + P+++T+ VL+ C+ S L K H +I +
Sbjct: 213 YAQWDLPHEAIKLFRRM-EIASVKPNEITLVNVLTACAR--SRDLETAKQVHKYIDETGI 269
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ + + L+D+Y KCG A +F M E+N+ W +I G E+ALSLF
Sbjct: 270 GFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNE 329
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
MQ +GVK +++T +L AC H G ++ G K+ + E+ +E + +VD++ K G
Sbjct: 330 MQLSGVKGDKVTMASLLIACTHLGALELG-KWLHVYIEKEKIEVDVALGTALVDMYAKCG 388
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSF---LAACKE 331
+E A V + M E +V+ W + LA C +
Sbjct: 389 SIESAMRVFQEMP-EKDVMTWTALIVGLAMCGQ 420
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 137/318 (43%), Gaps = 43/318 (13%)
Query: 23 LKSCTHFNNLTVIHH--LHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPERN 80
L+ CT + L IH L + + F + VA LH+ S +AR +F+++P
Sbjct: 47 LEKCTTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDS--GSLPYARLVFNQIPNPT 104
Query: 81 AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMIS 140
T N++I+GY+ + +P + + LF +++
Sbjct: 105 TFTCNSIIRGYTN-----------KNLPRQAI---------------------LFYQLMM 132
Query: 141 NEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGF 200
+GL PD+ T ++ C L GK H K + + I L++MY+ CG
Sbjct: 133 LQGLDPDRFTFPSLFKSCGVLCE-----GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGC 187
Query: 201 LKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260
L A VF+ M ++V+SW +I A +A+ LF M+ VKPNE+T VLTA
Sbjct: 188 LVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTA 247
Query: 261 CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVI 320
C + ++ ++ K IDE + ++D++ K G A ++ M E N+
Sbjct: 248 CARSRDLETAKQVHKYIDET-GIGFHTVLTSALMDVYCKCGCYPLARDLFNKMP-EKNLF 305
Query: 321 IWGSFLAACKEHKQFDMA 338
W + E ++ A
Sbjct: 306 CWNIMINGHVEDSDYEEA 323
>gi|21952815|dbj|BAC06231.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125572862|gb|EAZ14377.1| hypothetical protein OsJ_04297 [Oryza sativa Japonica Group]
gi|215697551|dbj|BAG91545.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 548
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 127/329 (38%), Positives = 199/329 (60%), Gaps = 6/329 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR+LF+++P RNA W++M+ G K+GN EA+ F+++P+RN+ +W+A+IA Y G
Sbjct: 204 ARELFNKMPARNAFVWSSMVTGNFKAGNADEAQAVFDKIPVRNLVNWNALIAGYAKMGCC 263
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ L+ F M+ ++ + PD+ T+ VLS C+ LGS L + H FI+++ N+ +
Sbjct: 264 EKALEAFHSMLKDK-IKPDEFTMAGVLSACAQLGS--LEQARKVHNFIIQHRIRKNQFVM 320
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
LVDM+AKCG L +A +F+ M+ RN W ++I + G S +A+ LF M+ + K
Sbjct: 321 NGLVDMFAKCGDLAFARNIFDNMQWRNTECWNSMISALSSHGQSIEAIRLFSKMECSEQK 380
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
PNE+T VL AC H G VDEG + F D Y + ++HYGC+VDL G++G L EAYE
Sbjct: 381 PNEITLLAVLGACTHGGFVDEGLRIFSKFD-IYGVAAAVEHYGCLVDLLGRSGRLREAYE 439
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ--ALRMVKPENDGGVFTLICDLYT 366
+++ M +EPN +IWGS L AC+ H +M+E V + L + + + L+ ++
Sbjct: 440 IVKNMLVEPNEVIWGSLLGACRVHGDAEMSELVSSEIHQLHSRRVSTNDAEYILLSNIMA 499
Query: 367 MNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+E+WE AER+R+ M V K G S +
Sbjct: 500 SSERWEQAERMRRKMALHGVGKTPGCSSV 528
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 118/278 (42%), Gaps = 46/278 (16%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL--RNVASWSAMIAAYLNAG 126
A LF + R VTW T+I+G++ G++ E R +FE MPL +NV +W+ + AY+ AG
Sbjct: 140 AEALFAGMGSRTPVTWATLIRGFAGKGDMAETRRWFEAMPLGMQNVVTWTVAVQAYVAAG 199
Query: 127 AYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ 186
+ +LF +M + M G
Sbjct: 200 DMETARELFNKMPARNAFVWSSMVTGNF-------------------------------- 227
Query: 187 IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
K G A VF+ + RN+++W ALI G A G E AL F M
Sbjct: 228 ----------KAGNADEAQAVFDKIPVRNLVNWNALIAGYAKMGCCEKALEAFHSMLKDK 277
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
+KP+E T GVL+AC G +++ RK I + + + G +VD+F K G L A
Sbjct: 278 IKPDEFTMAGVLSACAQLGSLEQARKVHNFIIQHRIRKNQFVMNG-LVDMFAKCGDLAFA 336
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
+ M+ N W S ++A H Q A R+ +
Sbjct: 337 RNIFDNMQWR-NTECWNSMISALSSHGQSIEAIRLFSK 373
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 16/176 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++ F M + + D F++ +L +C +L +H+ I++ + +V L+
Sbjct: 267 LEAFHSMLKDKIKPDEFTMAGVLSACAQLGSLEQARKVHNFIIQHRIRKNQFVMNGLVDM 326
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR----NVASW 115
+ FAR +FD + RN WN+MI S G EA F +M N +
Sbjct: 327 FAKCGDLAFARNIFDNMQWRNTECWNSMISALSSHGQSIEAIRLFSKMECSEQKPNEITL 386
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKS 171
A++ A + G D GL++F + I V + H G + L+G+S
Sbjct: 387 LAVLGACTHGGFVDEGLRIF-----------SKFDIYGVAAAVEHYGCLVDLLGRS 431
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 79/178 (44%), Gaps = 8/178 (4%)
Query: 167 LMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGS 226
++G++ H VK+ + + T LV +Y KCG L A VF+ M +RN ++ A++ G
Sbjct: 72 VLGRALHAEAVKSANAHDRLVGTTLVSVYCKCGLLADARRVFDGMLDRNAVTCNAMLAGY 131
Query: 227 AHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR 286
A G A +LF M + +T+ ++ G + E R++F+ +
Sbjct: 132 AAAGDMVSAEALFAGMGSR----TPVTWATLIRGFAGKGDMAETRRWFEAMPLGMQ---N 184
Query: 287 IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
+ + V + AG +E A E+ M N +W S + + D A+ V +
Sbjct: 185 VVTWTVAVQAYVAAGDMETARELFNKMPAR-NAFVWSSMVTGNFKAGNADEAQAVFDK 241
>gi|225456505|ref|XP_002280974.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50990
[Vitis vinifera]
Length = 523
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 132/385 (34%), Positives = 224/385 (58%), Gaps = 11/385 (2%)
Query: 12 VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFAR 70
+ SD + IL++C ++ H+ I+K G+ ++ + TSL+ Y A
Sbjct: 16 ILSDHQKLNCILEACKFSSDFRTAFQSHAKIIKFGYGTYPSLITSLVSTYAHCDCLDLAH 75
Query: 71 KLFDELPER--NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
+L DE+P + +T N +I K G A+ F +M R+V +W++MI + +
Sbjct: 76 QLLDEMPYWGFDLITANLIIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERF 135
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ L+ FREM+ N + PD T +V++GC+ LGS + HG +++ + +LN ++
Sbjct: 136 EEALRFFREML-NSNVEPDGFTFASVINGCARLGSSH--HAELVHGLMIEKKIQLNFILS 192
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
+ L+D+Y+KCG + A VF ++ +V W ++I G A G + DA+ +F M+ V
Sbjct: 193 SALIDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEMESVS 252
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+ +TF G+LTAC H GLV++GR+YF ++ Y ++P+++HYG MVDL G+AG +EEAY
Sbjct: 253 PDSITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEHYGAMVDLLGRAGLVEEAYA 312
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+I+ M +EP+++IW + L+AC+ K ++ E I + + + G + L+ ++Y
Sbjct: 313 MIKAMPMEPDIVIWRALLSACRNFKNPELGEVAIAKISHL-----NSGDYILLSNMYCSL 367
Query: 369 EKWEGAERVRKLMLNQNVRKARGSS 393
EKW+ AERVR++M VRK RG S
Sbjct: 368 EKWDSAERVREMMKRDGVRKNRGRS 392
>gi|15225365|ref|NP_182015.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546766|sp|Q1PEU4.2|PP201_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g44880
gi|2344896|gb|AAC31836.1| hypothetical protein [Arabidopsis thaliana]
gi|330255385|gb|AEC10479.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 555
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 133/327 (40%), Positives = 202/327 (61%), Gaps = 6/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR+LFDE+ + +TW TMI GY ++ AR F+ MP RN+ SW+ MI Y
Sbjct: 195 ARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQP 254
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
G++LF+EM + L PD +TI +VL S G++ L G+ H F+ + + + ++
Sbjct: 255 QEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSL--GEWCHCFVQRKKLDKKVKVC 312
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
T ++DMY+KCG ++ A +F+ M E+ V SW A+I G A G + AL LF M K
Sbjct: 313 TAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEE-K 371
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+E+T V+TAC H GLV+EGRK+F ++ E L +I+HYGCMVDL G+AG L+EA +
Sbjct: 372 PDEITMLAVITACNHGGLVEEGRKWFHVM-REMGLNAKIEHYGCMVDLLGRAGSLKEAED 430
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+I M EPN II SFL+AC ++K + AER++K+A+ + +P+NDG + L+ +LY +
Sbjct: 431 LITNMPFEPNGIILSSFLSACGQYKDIERAERILKKAVEL-EPQNDGN-YVLLRNLYAAD 488
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
++W+ V+ +M +K G S+I
Sbjct: 489 KRWDDFGMVKNVMRKNQAKKEVGCSLI 515
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 115/257 (44%), Gaps = 14/257 (5%)
Query: 100 ARDFFERMPLRNVASWS-AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGC 158
AR F++ P R+ + S +MI AYL Y L+R++ PD T + C
Sbjct: 29 ARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLTKSC 88
Query: 159 SHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVIS 218
S S+ + G H I + + + ++T +VDMYAK G + A F+ M R+ +S
Sbjct: 89 SL--SMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVS 146
Query: 219 WTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMID 278
WTALI G G + A LF+ M + + + ++ V +G + R+ F +
Sbjct: 147 WTALISGYIRCGELDLASKLFDQMPHV---KDVVIYNAMMDGFVKSGDMTSARRLFDEMT 203
Query: 279 EEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
+ + + M+ + ++ A ++ M E N++ W + + ++KQ
Sbjct: 204 HK-----TVITWTTMIHGYCNIKDIDAARKLFDAMP-ERNLVSWNTMIGGYCQNKQPQEG 257
Query: 339 ERVIK--QALRMVKPEN 353
R+ + QA + P++
Sbjct: 258 IRLFQEMQATTSLDPDD 274
>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 204/327 (62%), Gaps = 5/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR+LF+ +P +N +WNTMI GY+++G++ +AR+FF+RMP R+ SW+A+IA Y +G
Sbjct: 235 ARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYG 294
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ L LF EM +G ++ T + LS C+ + + L +GK HG +VK E +
Sbjct: 295 EEALHLFVEM-KRDGERLNRSTFTSTLSTCAEIAA--LELGKQVHGRVVKAGLESGCYVG 351
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+ MY KCG + A +VFE +EE+ V+SW +I G A G+ ++AL LFE M+ TG+
Sbjct: 352 NALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGIL 411
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+++T GVL+AC HTGLVD+G +YF + ++Y + +HY CM+DL G+AG L++A
Sbjct: 412 PDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQN 471
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+++ M EP+ WG+ L A + H ++ E+ K M +P+N G++ L+ +LY +
Sbjct: 472 LMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEM-EPDN-SGMYVLLSNLYAAS 529
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
+W R+R M ++ V+K G S +
Sbjct: 530 GRWGDVGRMRLRMRDRGVKKVPGYSWV 556
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 141/305 (46%), Gaps = 36/305 (11%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR LFD++PER+ V+WN M+ GY+++G V EA++ F+ MP +N SW+ M+AAY+ G
Sbjct: 49 ARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRI 108
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAV--------------LSGCSHLGSVGLLMGKSAHG 174
+ +LF E ++ + M G V + + ++ G + +G
Sbjct: 109 EDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNG 168
Query: 175 FIVKNEWELNEQIA------TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAH 228
+++ + E T +V Y + G L A VF+ M E+N +SW A+I G
Sbjct: 169 ELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQ 228
Query: 229 RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQ 288
+ A LFE M V ++ ++T G + + R +F + + +
Sbjct: 229 CKRMDQARELFEAMPCQNVS----SWNTMITGYAQNGDIAQARNFFDRMPQRDSIS---- 280
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRTMRLEP---NVIIWGSFLAACKEHKQFDMAE----RV 341
+ ++ + ++G+ EEA + M+ + N + S L+ C E ++ + RV
Sbjct: 281 -WAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRV 339
Query: 342 IKQAL 346
+K L
Sbjct: 340 VKAGL 344
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 109/241 (45%), Gaps = 21/241 (8%)
Query: 88 IKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD 147
++G + N+ AR F++MP R+V SW+AM++ Y G ++F EM ++ +
Sbjct: 37 LRGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWN 96
Query: 148 QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMV 207
M V +G + + F K +WEL ++ Y K L A +
Sbjct: 97 GMLAAYVQNG---------RIEDARRLFESKADWELISW--NCMMGGYVKRNRLVDARGI 145
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
F+ M ER+ +SW +I G A G +A LFE V T+T +++ V G++
Sbjct: 146 FDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDV----FTWTAMVSGYVQNGML 201
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
DE R+ F + E+ + + ++ + + +++A E+ M + NV W + +
Sbjct: 202 DEARRVFDGMPEKNSVS-----WNAIIAGYVQCKRMDQARELFEAMPCQ-NVSSWNTMIT 255
Query: 328 A 328
Sbjct: 256 G 256
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 90/185 (48%), Gaps = 15/185 (8%)
Query: 201 LKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260
L+ A ++F+ M ER+V+SW A++ G A GY ++A +F+ M N +++ G+L A
Sbjct: 46 LRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK----NSISWNGMLAA 101
Query: 261 CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVI 320
V G +++ R+ F E + + + CM+ + K L +A + M E + +
Sbjct: 102 YVQNGRIEDARRLF-----ESKADWELISWNCMMGGYVKRNRLVDARGIFDRM-PERDEV 155
Query: 321 IWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKL 380
W + ++ ++ + A+R+ +++ P D +T + Y N + A RV
Sbjct: 156 SWNTMISGYAQNGELLEAQRLFEES-----PVRDVFTWTAMVSGYVQNGMLDEARRVFDG 210
Query: 381 MLNQN 385
M +N
Sbjct: 211 MPEKN 215
>gi|147811906|emb|CAN68178.1| hypothetical protein VITISV_000846 [Vitis vinifera]
Length = 633
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 147/429 (34%), Positives = 226/429 (52%), Gaps = 54/429 (12%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSC-------------THFNNLTVIHHLHSHILKLGFIS 49
L++ MHR+ + SD F LK+C T + +H + +LG
Sbjct: 93 LYNFMHRKDIKSDHFMYPFGLKACARVLWCNEGDIKCTQLDIACKGAEIHCRLFRLGLDQ 152
Query: 50 HVYVATSLLHEYVVTSF-GFARKLFDEL-------------------------------P 77
++ SL++ Y F AR++FDE+ P
Sbjct: 153 DCFIQNSLVYLYSQCGFLDLARRVFDEMTEKTITSWNVMISAYDQINDFDSADSLIGSMP 212
Query: 78 ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
+N V+WN +I Y + G + +A+ F+ MP R+ SW++MIA Y+ Y L LFRE
Sbjct: 213 GKNVVSWNMLIARYIRLGKIEDAKAVFQEMPERDAVSWNSMIAGYVQIKDYARALALFRE 272
Query: 138 M-ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA 196
M I+N T +T+ +VL C+ G+ L +G+ H + + E+++ ++ LVDMYA
Sbjct: 273 MEIANVEAT--DITLISVLGACAETGA--LEIGRKIHLSLKQREYKIEGYLSNALVDMYA 328
Query: 197 KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT--GVKPNEMTF 254
KCG L A VF ++ +++ W A+I A GY E+AL LF M+ + G +PN +TF
Sbjct: 329 KCGHLNLAWEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVDGARPNRVTF 388
Query: 255 TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR 314
GVL AC H GLVDEGRK+F + EY + P I+HYGCMVDL + G L+EA+ +I+TM
Sbjct: 389 IGVLIACSHKGLVDEGRKFFNRMVNEYKIMPDIKHYGCMVDLLSRCGLLKEAHHMIKTMP 448
Query: 315 LEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGA 374
E N ++W + L AC+ H D+AE +Q +M +P DG + L+ ++Y ++W
Sbjct: 449 FEANSVLWRTLLGACRVHHHVDLAEESFQQLGKM-EPLRDGD-YVLLSNIYAEAQRWNDV 506
Query: 375 ERVRKLMLN 383
ER K++ N
Sbjct: 507 ERASKILAN 515
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 85/387 (21%), Positives = 149/387 (38%), Gaps = 92/387 (23%)
Query: 22 ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDELPE 78
+L +++ + I K G +H +V + ++ ++ G +A+ +F++
Sbjct: 9 LLSKLQQLSSVKEVEQTQCLITKSGLFNHPFVISKIISFLSLSPLGSLVYAQAIFEDTTM 68
Query: 79 RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM 138
N NTMI+ Y+KS +A + M +++ S M L A A R +
Sbjct: 69 DNPFVCNTMIRAYAKSVFPIKAIYLYNFMHRKDIKSDHFMYPFGLKACA--------RVL 120
Query: 139 ISNEG-LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
NEG + Q+ I G H + + + + I LV +Y++
Sbjct: 121 WCNEGDIKCTQLDIAC--------------KGAEIHCRLFRLGLDQDCFIQNSLVYLYSQ 166
Query: 198 CGFLKYALMVFELMEE-------------------------------RNVISWTALICGS 226
CGFL A VF+ M E +NV+SW LI
Sbjct: 167 CGFLDLARRVFDEMTEKTITSWNVMISAYDQINDFDSADSLIGSMPGKNVVSWNMLIARY 226
Query: 227 AHRGYSEDA-------------------------------LSLFEMMQATGVKPNEMTFT 255
G EDA L+LF M+ V+ ++T
Sbjct: 227 IRLGKIEDAKAVFQEMPERDAVSWNSMIAGYVQIKDYARALALFREMEIANVEATDITLI 286
Query: 256 GVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR 314
VL AC TG ++ GRK + + EY +E + + +VD++ K G L A+EV ++
Sbjct: 287 SVLGACAETGALEIGRKIHLSLKQREYKIEGYLSN--ALVDMYAKCGHLNLAWEVFSELK 344
Query: 315 LEPNVIIWGSFLAACKEHKQFDMAERV 341
++ ++ W + + + H + A R+
Sbjct: 345 MK-HISCWNAMIVSLAVHGYCEEALRL 370
>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
Length = 662
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 135/350 (38%), Positives = 202/350 (57%), Gaps = 11/350 (3%)
Query: 53 VATSLLHEYVVTSFGFARKL------FDELPER-NAVTWNTMIKGYSKSGNVCEARDFFE 105
V S+ +V+ F +R + F PE+ +AV W M+ GY GNV +A ++FE
Sbjct: 188 VRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFE 247
Query: 106 RMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVG 165
MP+RN+ SW+A++A Y+ D L+LFR M+ + P+ T+ +VL GCS+L ++G
Sbjct: 248 AMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALG 307
Query: 166 LLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICG 225
GK H + +K N + T LV MY KCG L A +F M R+V++W A+I G
Sbjct: 308 F--GKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISG 365
Query: 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP 285
A G ++A++LFE M+ GV+PN +TF VLTAC+HTGL D G + F+ + E Y +EP
Sbjct: 366 YAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEP 425
Query: 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQA 345
R+ HY CMVDL +AG LE A ++IR+M EP+ +G+ LAAC+ +K + AE +
Sbjct: 426 RVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKL 485
Query: 346 LRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ K G + + ++Y +W+ RVR+ M + V K G S I
Sbjct: 486 IE--KDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWI 533
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 135/291 (46%), Gaps = 22/291 (7%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR LFD +P +AV++NT++ + SG+ AR F MP+R+V SW+ M++ +GA
Sbjct: 117 ARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAV 176
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ +F M ++ + M G CS SA +N E + +
Sbjct: 177 EEAKAVFLAMPVRNSVSWNAMVSGF---ACSR--------DMSAAEEWFRNAPEKGDAVL 225
Query: 189 -TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE-MMQATG 246
T +V Y G + A+ FE M RN++SW A++ G +++DAL LF M++
Sbjct: 226 WTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREAN 285
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
V+PN T + VL C + + G++ + + L + +V ++ K G L A
Sbjct: 286 VQPNASTLSSVLLGCSNLSALGFGKQIHQWC-MKLPLSRNLTVGTSLVSMYCKCGDLSSA 344
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
++ M +V+ W + ++ +H K+A+ + + D GV
Sbjct: 345 CKLFGEMHTR-DVVAWNAMISGYAQHGDG-------KEAINLFERMKDEGV 387
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 6/152 (3%)
Query: 1 MQLFSQMHRQS-VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
++LF M R++ V ++ ++ +L C++ + L +H +KL ++ V TSL+
Sbjct: 274 LRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVS 333
Query: 60 EYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA----S 114
Y A KLF E+ R+ V WN MI GY++ G+ EA + FERM V +
Sbjct: 334 MYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWIT 393
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
+ A++ A ++ G D G++ F M G+ P
Sbjct: 394 FVAVLTACIHTGLCDFGIRCFEGMQELYGIEP 425
>gi|449440231|ref|XP_004137888.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
gi|449521725|ref|XP_004167880.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 521
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 150/439 (34%), Positives = 232/439 (52%), Gaps = 53/439 (12%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSC------THFNNLTVIHHL--------HSHILKLGFI 48
++++M R V SD F+ +L++C T ++ HH+ H+ ILKLGF
Sbjct: 86 IYNRMQRMDVDSDHFTYNFVLRACARAIKCTEMDDQCFGHHIISRKGSEIHARILKLGFD 145
Query: 49 SHVYVATSLLHEYVVTSF-GFARKLFDEL------------------------------- 76
+V SLL Y + GFAR +F+E+
Sbjct: 146 QDHHVQNSLLLVYSGSGLVGFARLIFNEMTVKTAVSWNIMMSAYNRVHDYKSADVLLESM 205
Query: 77 PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFR 136
P+ NAV+WNT++ Y + N+ AR FE MP R+V SW+++I+ Y+N Y L LF
Sbjct: 206 PQTNAVSWNTLLARYIRLNNLVAARKVFEEMPERDVVSWNSIISGYVNVKDYKGALDLFH 265
Query: 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA 196
M + ++T ++L C+ LG+ L +GK H + + + + + +VDMYA
Sbjct: 266 SM-KQWNIRATEVTFISILGACAELGA--LEIGKKIHDSLKEKHYRIEGYLGNAIVDMYA 322
Query: 197 KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV--KPNEMTF 254
KCG L AL VF ME + V W A+I G A G+ E AL +F+ M+A KPN +TF
Sbjct: 323 KCGELGLALEVFNEMEMKPVSCWNAMIMGLAVHGHCERALEMFDSMKAEDGDHKPNRITF 382
Query: 255 TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR 314
+L AC H GL+ EGR +F ++ +Y + P ++HYGCM+DL + GFLEEAY +I+T
Sbjct: 383 IALLIACSHKGLLAEGRHFFSLMVTKYKIMPDLKHYGCMIDLLSRWGFLEEAYVMIKTCP 442
Query: 315 LEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGA 374
++W + L C+ H+ ++ E ++ L ++P DG + L+ ++Y E+W+
Sbjct: 443 FSSCSVLWRTLLGGCRLHRHVELGEESFRK-LAELEPGKDGD-YVLLSNIYAEEERWDDV 500
Query: 375 ERVRKLMLNQNVRKARGSS 393
ER+RK M+N V K GSS
Sbjct: 501 ERLRKEMINYGVCKKAGSS 519
>gi|413937223|gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]
Length = 625
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 143/363 (39%), Positives = 211/363 (58%), Gaps = 12/363 (3%)
Query: 39 HSHILKLGFISHVYVATSLLHEYVVTS-FGFARKLFDE--LPERNAVTWNTMIKGYSKSG 95
H LK G ++H V LL Y AR++FD +A +WNTM+ GY K G
Sbjct: 139 HGQALKHGALAHPVVTNCLLKLYCALGMLSDARRVFDTSGATSLDAFSWNTMVSGYGKCG 198
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155
++ AR+ F RMP R + SWSAMI A + AG + L++F +M+ N G PD + + +VL
Sbjct: 199 DLEAAREVFVRMPERGLVSWSAMIDACIRAGEFSEALRMFDQMMGN-GFRPDAVVLSSVL 257
Query: 156 SGCSHLGSVGLLMGKSAHGFIVK---NEWELNEQIATILVDMYAKCGFLKYALMVFELME 212
C+HLG+ L G+ H F+ N + T LVDMY KCG + A VF+ ++
Sbjct: 258 KACAHLGA--LERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCKCGCMDEAWWVFDGVQ 315
Query: 213 ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK 272
++V+ W A+I G A G+ + AL LF M G PNE TF VL AC HTG VDEG++
Sbjct: 316 SQDVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFVVVLCACTHTGRVDEGKE 375
Query: 273 YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
F+ + ++ +EPR +HYGC+ DL G+AG LEEA V+ M +EP+ WG+ +++C H
Sbjct: 376 IFRSMC-DHGIEPRREHYGCLADLLGRAGLLEEAEAVLLDMPMEPHASQWGALMSSCLMH 434
Query: 333 KQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGS 392
+ ERV K+ + + +P +DGG + ++ +LY +N WE A+ +RK+M + +K G
Sbjct: 435 NNVGVGERVGKKLIEL-EP-DDGGRYVVLFNLYAVNGLWEDAKALRKMMEERGAKKETGL 492
Query: 393 SVI 395
S I
Sbjct: 493 SFI 495
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 105/258 (40%), Gaps = 41/258 (15%)
Query: 158 CSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA--------------------- 196
C L + GL AHG +K+ + + L+ +Y
Sbjct: 129 CDRLAAAGL-----AHGQALKHGALAHPVVTNCLLKLYCALGMLSDARRVFDTSGATSLD 183
Query: 197 ------------KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQA 244
KCG L+ A VF M ER ++SW+A+I G +AL +F+ M
Sbjct: 184 AFSWNTMVSGYGKCGDLEAAREVFVRMPERGLVSWSAMIDACIRAGEFSEALRMFDQMMG 243
Query: 245 TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE-YDLEP-RIQHYGCMVDLFGKAGF 302
G +P+ + + VL AC H G ++ GR + + E P + +VD++ K G
Sbjct: 244 NGFRPDAVVLSSVLKACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCKCGC 303
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362
++EA+ V ++ + +V++W + + + A + ++ L M N+ ++C
Sbjct: 304 MDEAWWVFDGVQSQ-DVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFVVVLC 362
Query: 363 DLYTMNEKWEGAERVRKL 380
EG E R +
Sbjct: 363 ACTHTGRVDEGKEIFRSM 380
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 134/331 (40%), Gaps = 65/331 (19%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGF---ISHVYVATSL 57
+++F QM D+ + +LK+C H L +H + G +V + T+L
Sbjct: 235 LRMFDQMMGNGFRPDAVVLSSVLKACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETAL 294
Query: 58 LHEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP----LRNV 112
+ Y A +FD + ++ V WN MI G + +G+ A + F RM + N
Sbjct: 295 VDMYCKCGCMDEAWWVFDGVQSQDVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNE 354
Query: 113 ASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSA 172
+++ ++ A + G D G ++FR M + G+ P + H G + L+G++
Sbjct: 355 STFVVVLCACTHTGRVDEGKEIFRSMC-DHGIEPRR----------EHYGCLADLLGRAG 403
Query: 173 HGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNV---------------- 216
L E+ +L+DM + ++ ++ + NV
Sbjct: 404 ----------LLEEAEAVLLDMPMEPHASQWGALMSSCLMHNNVGVGERVGKKLIELEPD 453
Query: 217 --ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE----- 269
+ L A G EDA +L +MM+ G K TG L+ GLV E
Sbjct: 454 DGGRYVVLFNLYAVNGLWEDAKALRKMMEERGAKKE----TG-LSFIEWNGLVHEFRSGD 508
Query: 270 -----GRKYFKMIDEEYDLEPRIQHYGCMVD 295
R+ + +++ D+E R+Q G + D
Sbjct: 509 TRHPQTRQIYALLE---DMEQRLQLIGYVKD 536
>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
Length = 1434
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 136/359 (37%), Positives = 210/359 (58%), Gaps = 37/359 (10%)
Query: 38 LHSHILKLGFISHVYVATSLLHEYVVTSFG-FARKLFDELPERNAVTWNTMIKGYSKSGN 96
+HS ++ GF S V+V +L+H Y A KLF+ + ERN VTWN++I GY+ +G
Sbjct: 17 VHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGR 76
Query: 97 VCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLS 156
EA F M LR G+ PD T+ ++LS
Sbjct: 77 PNEALTLFREMGLR--------------------------------GVEPDGFTMVSLLS 104
Query: 157 GCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNV 216
C+ LG+ L +G+ AH ++VK + N L+D+YAKCG ++ A VF+ MEE++V
Sbjct: 105 ACAELGA--LALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSV 162
Query: 217 ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKM 276
+SWT+LI G A G+ ++AL LF+ ++ G+ P+E+TF GVL AC H G+VDEG YFK
Sbjct: 163 VSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKR 222
Query: 277 IDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFD 336
+ EEY + P+I+HYGCMVDL G+AG +++A+E I+ M ++PN ++W + L AC H
Sbjct: 223 MKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLA 282
Query: 337 MAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ E V + L ++P++ G + L+ +LY ++W +VR+ ML + V+K G S++
Sbjct: 283 LGE-VARAQLLQLEPKHSGD-YVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLV 339
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 87/159 (54%), Gaps = 4/159 (2%)
Query: 169 GKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAH 228
G+ H ++N +E + LV MYA CG + A +FELM ERN+++W ++I G A
Sbjct: 14 GEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYAL 73
Query: 229 RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRI 287
G +AL+LF M GV+P+ T +L+AC G + GR+ + M+ + L+ +
Sbjct: 74 NGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMV--KVGLDGNL 131
Query: 288 QHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
++DL+ K G + +A++V M E +V+ W S +
Sbjct: 132 HAGNALLDLYAKCGSIRQAHKVFDEME-EKSVVSWTSLI 169
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 111/252 (44%), Gaps = 51/252 (20%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF +M + V D F+++ +L +C L + H +++K+G +++ +LL
Sbjct: 81 LTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDL 140
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y S A K+FDE+ E++ V+W ++I G + +G EA
Sbjct: 141 YAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEA------------------- 181
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI--- 176
L+LF+E+ +GL P ++T VL CSH G V GF
Sbjct: 182 ------------LELFKEL-ERKGLMPSEITFVGVLYACSHCGMVD-------EGFDYFK 221
Query: 177 -VKNEWELNEQIA--TILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYS 232
+K E+ + +I +VD+ + G +K A + M + N + W L+ G+
Sbjct: 222 RMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGH- 280
Query: 233 EDALSLFEMMQA 244
L+L E+ +A
Sbjct: 281 ---LALGEVARA 289
>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 613
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 131/328 (39%), Positives = 194/328 (59%), Gaps = 5/328 (1%)
Query: 69 ARKLFDELPER-NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
A + F PE+ +AV W M+ GY GNV +A ++FE MP+RN+ SW+A++A Y+
Sbjct: 161 AEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSH 220
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
D L+LFR M+ + P+ T+ +VL GCS+L ++G GK H + +K N +
Sbjct: 221 ADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGF--GKQIHQWCMKLPLSRNLTV 278
Query: 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
T LV MY KCG L A +F M R+V++W A+I G A G ++A++LFE M+ GV
Sbjct: 279 GTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGV 338
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
+PN +TF VLTAC+HTGL D G + F+ + E Y +EPR+ HY CMVDL +AG LE A
Sbjct: 339 EPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAV 398
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM 367
++IR+M EP+ +G+ LAAC+ +K + AE + + K G + + ++Y
Sbjct: 399 DLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIE--KDPQSAGAYVQLANIYAG 456
Query: 368 NEKWEGAERVRKLMLNQNVRKARGSSVI 395
+W+ RVR+ M + V K G S I
Sbjct: 457 ANQWDDVSRVRRWMKDNAVVKTPGYSWI 484
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 135/291 (46%), Gaps = 22/291 (7%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR LFD +P +AV++NT++ + SG+ AR F MP+R+V SW+ M++ +GA
Sbjct: 68 ARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAV 127
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ +F M ++ + M G CS SA +N E + +
Sbjct: 128 EEAKAVFLAMPVRNSVSWNAMVSG---FACSR--------DMSAAEEWFRNAPEKGDAVL 176
Query: 189 -TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE-MMQATG 246
T +V Y G + A+ FE M RN++SW A++ G +++DAL LF M++
Sbjct: 177 WTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREAN 236
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
V+PN T + VL C + + G++ + + L + +V ++ K G L A
Sbjct: 237 VQPNASTLSSVLLGCSNLSALGFGKQIHQWC-MKLPLSRNLTVGTSLVSMYCKCGDLSSA 295
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
++ M +V+ W + ++ +H K+A+ + + D GV
Sbjct: 296 CKLFGEMHTR-DVVAWNAMISGYAQHGDG-------KEAINLFERMKDEGV 338
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 6/152 (3%)
Query: 1 MQLFSQMHRQS-VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
++LF M R++ V ++ ++ +L C++ + L +H +KL ++ V TSL+
Sbjct: 225 LRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVS 284
Query: 60 EYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA----S 114
Y A KLF E+ R+ V WN MI GY++ G+ EA + FERM V +
Sbjct: 285 MYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWIT 344
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
+ A++ A ++ G D G++ F M G+ P
Sbjct: 345 FVAVLTACIHTGLCDFGIRCFEGMQELYGIEP 376
>gi|242091784|ref|XP_002436382.1| hypothetical protein SORBIDRAFT_10g001540 [Sorghum bicolor]
gi|241914605|gb|EER87749.1| hypothetical protein SORBIDRAFT_10g001540 [Sorghum bicolor]
Length = 507
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 128/347 (36%), Positives = 213/347 (61%), Gaps = 7/347 (2%)
Query: 52 YVATSLLHEYVVTS-FGFARKLFDELPER-NAVTWNTMIKGYSKSGNVCEARDFFERMPL 109
Y+A++L+ Y + +R++FDELP +A N ++ Y++ G V +A F MP
Sbjct: 120 YLASALVASYARSGHLAESRRVFDELPPHSDAAARNALLSAYARCGRVDDAESLFAGMPD 179
Query: 110 RNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMG 169
RNV SW+AM++ Y G ++ ++ F EM G+ P+++T+ +VL C+ +G++ L G
Sbjct: 180 RNVISWTAMVSGYAQNGRHEEAVRTFLEMWEGCGVRPNEVTVSSVLPACAAVGALAL--G 237
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFE-LMEERNVISWTALICGSAH 228
+ + N +A LV+MYAKCG ++ A MVF + ++R++ SW ++I A
Sbjct: 238 RKVERYARGRGMLTNVYVANALVEMYAKCGSIRRAWMVFRGIGKQRDLCSWNSMIMAFAV 297
Query: 229 RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQ 288
G + L LF ++ TG KP+ +TF GV+ AC H GLVDEG+ F + EE+ L+PRI+
Sbjct: 298 HGLWREVLGLFHKLRMTGAKPDGITFVGVILACTHGGLVDEGKLLFNSMREEFGLKPRIE 357
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348
HYGCMVDL G+AG L+EA +I +M +EP+ +IWG+ L AC H ++AE +++ +R+
Sbjct: 358 HYGCMVDLLGRAGLLKEADSLIASMPMEPDAVIWGALLGACSFHGNLELAEVAVEKLMRL 417
Query: 349 VKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+P+N + ++ ++Y + KW+G +V KL+ ++ +K+ G S I
Sbjct: 418 -EPQNTANL-VILSNIYASHGKWDGVAQVWKLLKEKDHKKSAGYSFI 462
>gi|147860852|emb|CAN83162.1| hypothetical protein VITISV_022557 [Vitis vinifera]
Length = 562
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 130/375 (34%), Positives = 220/375 (58%), Gaps = 11/375 (2%)
Query: 22 ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFDELPER- 79
IL++C ++ H+ I+K G+ ++ + TSL+ Y A +L DE+P
Sbjct: 65 ILEACKFSSDFRTAFQSHAKIIKFGYGTYPSLITSLVSTYAHCDCLDLAHQLLDEMPYWG 124
Query: 80 -NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM 138
+ +T N +I K G A+ F +M R+V +W++MI + ++ L+ FREM
Sbjct: 125 FDLITANLIIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREM 184
Query: 139 ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198
+ N + PD T +V++GC+ LGS + HG +++ + +LN +++ L+D+Y+KC
Sbjct: 185 L-NSNVEPDGFTFASVINGCARLGSSH--HAELVHGLMIEKKIQLNFILSSALIDLYSKC 241
Query: 199 GFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL 258
G + A VF ++ +V W ++I G A G + DA+ +F M+ V P+ +TF G+L
Sbjct: 242 GRINTAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEMESVSPDSITFIGIL 301
Query: 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPN 318
TAC H GLV++GR+YF ++ Y ++P+++HYG MVDL G+AG +EEAY +I+ M +EP+
Sbjct: 302 TACSHCGLVEQGRRYFDLMRRHYSIQPQLEHYGAMVDLLGRAGLVEEAYAMIKAMPMEPD 361
Query: 319 VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVR 378
++IW + L+AC+ K ++ E I + + + G + L+ ++Y EKW+ AERVR
Sbjct: 362 IVIWRALLSACRNFKNPELGEVAIAKISHL-----NSGDYILLSNMYCSLEKWDSAERVR 416
Query: 379 KLMLNQNVRKARGSS 393
++M VRK RG S
Sbjct: 417 EMMKRDGVRKNRGRS 431
>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Cucumis sativus]
Length = 611
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 219/383 (57%), Gaps = 7/383 (1%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLF 73
D F I+++C+ L + +H+ + F V +SL+ Y AR +F
Sbjct: 104 DHFVFACIVRACSSLGYLRLGKQVHARFMLSFFCDDEVVKSSLIDMYTKCGQPDDARAVF 163
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
D + +N+V+W +MI GY++SG CEA D F + P+RN+ SW+A+I+ + +G
Sbjct: 164 DSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFS 223
Query: 134 LFREMISNEGLT-PDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILV 192
LF EM EG+ D + + +V+ GC++L + L GK HG ++ +E I+ LV
Sbjct: 224 LFNEM-RREGIDIVDPLVLSSVVGGCANLALLEL--GKQIHGLVIALGFESCLFISNALV 280
Query: 193 DMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEM 252
DMYAKC + A +F M ++VISWT++I G+A G +E+AL+L++ M + +KPNE+
Sbjct: 281 DMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEV 340
Query: 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312
TF G+L AC H GLV GR+ F+ + +Y + P +QHY C++DL ++G L+EA ++
Sbjct: 341 TFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDK 400
Query: 313 MRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWE 372
+ +P+ W S L+AC H +M R+ + L + KPE D + L+ ++Y E W
Sbjct: 401 IPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDL-KPE-DPSTYILLSNVYAGAEMWG 458
Query: 373 GAERVRKLMLNQNVRKARGSSVI 395
+VRKLM + VRK G S I
Sbjct: 459 SVSKVRKLMSSMEVRKEPGYSSI 481
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 84/365 (23%), Positives = 151/365 (41%), Gaps = 67/365 (18%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPER 79
LH L+ C + + LHS I+K GF ++
Sbjct: 7 LHQLQLCARRQSASAAGELHSQIIKAGF------------------------------DK 36
Query: 80 NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI 139
+++ NT++ Y K G + +A F+ MP R+ SW++++ A+ A L + M
Sbjct: 37 SSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKALIPRRTLSMLNTMF 96
Query: 140 SNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG 199
+++GL PD ++ CS LG L +GK H + + + +E + + L+DMY KCG
Sbjct: 97 THDGLQPDHFVFACIVRACSSLGY--LRLGKQVHARFMLSFFCDDEVVKSSLIDMYTKCG 154
Query: 200 FLKYALMVFELM-------------------------------EERNVISWTALICGSAH 228
A VF+ + RN+ SWTALI G
Sbjct: 155 QPDDARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQ 214
Query: 229 RGYSEDALSLFEMMQATGVK-PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRI 287
G+ + SLF M+ G+ + + + V+ C + L++ G++ ++ E +
Sbjct: 215 SGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLV-IALGFESCL 273
Query: 288 QHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ-AL 346
+VD++ K + A ++ M +VI W S + +H + + A + + L
Sbjct: 274 FISNALVDMYAKCSDILAAKDIFYRMP-RKDVISWTSIIVGTAQHGKAEEALTLYDEMVL 332
Query: 347 RMVKP 351
+KP
Sbjct: 333 SRIKP 337
>gi|357466867|ref|XP_003603718.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355492766|gb|AES73969.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 629
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 145/402 (36%), Positives = 232/402 (57%), Gaps = 16/402 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F++M ++ +S + ++KSC ++L + L +K G S VY +S+++
Sbjct: 109 LSVFTKMLNMNIRPNSHTFTTLVKSCVTLSSLEQVFTL---TMKSGNSSDVYFVSSVIN- 164
Query: 61 YVVTSFG---FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
V + G AR++FDE RN V W +++ GY G V E RD F++MP RN AS SA
Sbjct: 165 -VFSKHGAIHLARQVFDESSNRNVVCWTSLVSGYCSCGLVNEVRDVFDKMPQRNEASNSA 223
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGA----VLSGCSHLGSVGLLMGKSAH 173
M++ Y+ + G++LFRE+ + GA VL+ C+ +G+ GK H
Sbjct: 224 MVSGYVRNSFFSEGVQLFRELKKKDKGRARVKFNGALLVSVLNACTVMGA--FEEGKWIH 281
Query: 174 GFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE 233
++ +N E + ++ T L+D YAKCG++K A VF+ M ++V +W+A+I G A G ++
Sbjct: 282 SYVEENGLEYDLELGTALIDFYAKCGWVKDAEKVFDKMLVKDVATWSAMILGLAINGNNK 341
Query: 234 DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293
AL LFE M+ G KPNE+TF GVLTAC H L E + F ++ E+Y++ P I+HYGC+
Sbjct: 342 MALELFEKMEKVGPKPNEVTFVGVLTACNHKSLFGESSRLFGIMSEKYNITPSIEHYGCI 401
Query: 294 VDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353
VD+ ++G +++A I +M +EP+ IWGS L C H +++ ++V K + PE+
Sbjct: 402 VDILARSGQVKKALIFINSMHIEPDGAIWGSLLNGCLMHGHYELGQKVGKYLIEF-DPEH 460
Query: 354 DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G + L+ ++Y KWEG VRKLM ++ V G S I
Sbjct: 461 SGR-YVLLANMYANMGKWEGVSEVRKLMKDRGVVIVYGWSFI 501
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 76/179 (42%), Gaps = 11/179 (6%)
Query: 156 SGCSHL----GSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC--GFLKYALMVFE 209
S C HL ++ + K H + N I++ ++ +A G +YA +F
Sbjct: 23 SPCLHLLQQWQNLTMKQTKQIHAHAIANNLTRFSYISSRILAFFAASPRGDFRYAETLFT 82
Query: 210 LMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
M N+ + ++I + +LS+F M ++PN TFT ++ +CV +++
Sbjct: 83 HMPNPNIFDYNSIITSYTTNSQFDKSLSVFTKMLNMNIRPNSHTFTTLVKSCVTLSSLEQ 142
Query: 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
F + + + + ++++F K G + A +V NV+ W S ++
Sbjct: 143 ---VFTLTMKSGN-SSDVYFVSSVINVFSKHGAIHLARQVFDESS-NRNVVCWTSLVSG 196
>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 781
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 129/327 (39%), Positives = 201/327 (61%), Gaps = 5/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A++LFD +P RN TWNTMI GY++ G + EA++ F++MP R+ SW+AMIA Y +G
Sbjct: 331 AKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHS 390
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L+LF +M EG ++ + + LS C+ + V L +GK HG +VK +E +
Sbjct: 391 FEALRLFVQM-EREGGRLNRSSFSSALSTCADV--VALELGKQLHGRLVKGGYETGCFVG 447
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+ MY KCG ++ A +F+ M ++++SW +I G + G+ E AL FE M+ G+K
Sbjct: 448 NALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLK 507
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P++ T VL+AC HTGLVD+GR+YF + ++Y + P QHY CMVDL G+AG LE+A+
Sbjct: 508 PDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHN 567
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+++ M EP+ IWG+ L A + H ++AE + M +PEN G++ L+ +LY +
Sbjct: 568 LMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAM-EPEN-SGMYVLLSNLYASS 625
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
+W ++R M ++ V+K G S I
Sbjct: 626 GRWGDVGKLRVRMRDKGVKKVPGYSWI 652
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 124/263 (47%), Gaps = 21/263 (7%)
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
F ARKLFDE+PER+ V+WN MIKGY ++ N+ +AR+ FE MP R+V SW+ M++ Y
Sbjct: 111 FELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQN 170
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
G D +F M + ++ A+LS M ++ F + W L
Sbjct: 171 GCVDDARSVFDRMPEK-----NDVSWNALLSAYVQNSK----MEEACMLFKSRENWALVS 221
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
L+ + K + A F+ M R+V+SW +I G A G ++A LF+
Sbjct: 222 W--NCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQ 279
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305
V T+T +++ + +V+E R+ F + E ++ + M+ + + +E
Sbjct: 280 DV----FTWTAMVSGYIQNRMVEEARELFDKMPERNEVS-----WNAMLAGYVQGERMEM 330
Query: 306 AYEVIRTMRLEPNVIIWGSFLAA 328
A E+ M NV W + +
Sbjct: 331 AKELFDVMPCR-NVSTWNTMITG 352
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 125/267 (46%), Gaps = 27/267 (10%)
Query: 65 SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLN 124
+ G AR+LF+ +PER+ +WNTM+ GY+++G V +AR F+RMP +N SW+A+++AY+
Sbjct: 141 NLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQ 200
Query: 125 AGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN 184
+ LF+ N L +G + + + + + N
Sbjct: 201 NSKMEEACMLFKSR-ENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWN----- 254
Query: 185 EQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQA 244
++ YA+ G + A +F+ ++V +WTA++ G E+A LF+ M
Sbjct: 255 -----TIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMP- 308
Query: 245 TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP--RIQHYGCMVDLFGKAGF 302
+ NE+++ +L V + +M E +D+ P + + M+ + + G
Sbjct: 309 ---ERNEVSWNAMLAGYVQG-------ERMEMAKELFDVMPCRNVSTWNTMITGYAQCGK 358
Query: 303 LEEAYEVIRTM-RLEPNVIIWGSFLAA 328
+ EA + M + +P + W + +A
Sbjct: 359 ISEAKNLFDKMPKRDP--VSWAAMIAG 383
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 121/276 (43%), Gaps = 25/276 (9%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A ++F +P ++V++N MI GY ++G AR F+ MP R++ SW+ MI Y+
Sbjct: 83 ALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNL 142
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+LF M + + + M G +GC + E N+
Sbjct: 143 GKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARS-----------VFDRMPEKNDVSW 191
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+ Y + ++ A M+F+ E ++SW L+ G + +A F+ M V
Sbjct: 192 NALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDV- 250
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP--RIQHYGCMVDLFGKAGFLEEA 306
+++ ++T +G +DE R+ F D P + + MV + + +EEA
Sbjct: 251 ---VSWNTIITGYAQSGKIDEARQLF-------DESPVQDVFTWTAMVSGYIQNRMVEEA 300
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVI 342
E+ M E N + W + LA + ++ +MA+ +
Sbjct: 301 RELFDKM-PERNEVSWNAMLAGYVQGERMEMAKELF 335
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 126/302 (41%), Gaps = 57/302 (18%)
Query: 84 WNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEG 143
WN I Y ++G EA F+RMP + S++ MI+ YL G ++ KLF EM
Sbjct: 67 WNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEM----- 121
Query: 144 LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKY 203
P++ + W +++ Y + L
Sbjct: 122 --PERDLVS----------------------------W-------NVMIKGYVRNRNLGK 144
Query: 204 ALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263
A +FE+M ER+V SW ++ G A G +DA S+F+ M + N++++ +L+A V
Sbjct: 145 ARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMP----EKNDVSWNALLSAYVQ 200
Query: 264 TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWG 323
++E FK E + L + C++ F K + EA + +M + +V+ W
Sbjct: 201 NSKMEEACMLFKS-RENWAL----VSWNCLLGGFVKKKKIVEARQFFDSMNVR-DVVSWN 254
Query: 324 SFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383
+ + + + D A ++ ++ P D +T + Y N E A + M
Sbjct: 255 TIITGYAQSGKIDEARQLFDES-----PVQDVFTWTAMVSGYIQNRMVEEARELFDKMPE 309
Query: 384 QN 385
+N
Sbjct: 310 RN 311
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 102/237 (43%), Gaps = 39/237 (16%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF QM R+ + S L +C L + LH ++K G+ + +V +LL
Sbjct: 394 LRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLM 453
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y S A LF E+ ++ V+WNTMI GYS+ G F + LR
Sbjct: 454 YCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHG--------FGEVALR--------- 496
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
F E + EGL PD T+ AVLS CSH GL+ + + +
Sbjct: 497 ---------------FFESMKREGLKPDDATMVAVLSACSH---TGLVDKGRQYFYTMTQ 538
Query: 180 EWEL--NEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSE 233
++ + N Q +VD+ + G L+ A + + M E + W L+ S G +E
Sbjct: 539 DYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTE 595
>gi|297607983|ref|NP_001061009.2| Os08g0153600 [Oryza sativa Japonica Group]
gi|255678154|dbj|BAF22923.2| Os08g0153600 [Oryza sativa Japonica Group]
Length = 551
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 131/328 (39%), Positives = 194/328 (59%), Gaps = 5/328 (1%)
Query: 69 ARKLFDELPER-NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
A + F PE+ +AV W M+ GY GNV +A ++FE MP+RN+ SW+A++A Y+
Sbjct: 161 AEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSH 220
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
D L+LFR M+ + P+ T+ +VL GCS+L ++G GK H + +K N +
Sbjct: 221 ADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGF--GKQIHQWCMKLPLSRNLTV 278
Query: 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
T LV MY KCG L A +F M R+V++W A+I G A G ++A++LFE M+ GV
Sbjct: 279 GTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGV 338
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
+PN +TF VLTAC+HTGL D G + F+ + E Y +EPR+ HY CMVDL +AG LE A
Sbjct: 339 EPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAV 398
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM 367
++IR+M EP+ +G+ LAAC+ +K + AE + + K G + + ++Y
Sbjct: 399 DLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIE--KDPQSAGAYVQLANIYAG 456
Query: 368 NEKWEGAERVRKLMLNQNVRKARGSSVI 395
+W+ RVR+ M + V K G S I
Sbjct: 457 ANQWDDVSRVRRWMKDNAVVKTPGYSWI 484
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 135/291 (46%), Gaps = 22/291 (7%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR LFD +P +AV++NT++ + SG+ AR F MP+R+V SW+ M++ +GA
Sbjct: 68 ARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAV 127
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ +F M ++ + M G CS SA +N E + +
Sbjct: 128 EEAKAVFLAMPVRNSVSWNAMVSG---FACSR--------DMSAAEEWFRNAPEKGDAVL 176
Query: 189 -TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE-MMQATG 246
T +V Y G + A+ FE M RN++SW A++ G +++DAL LF M++
Sbjct: 177 WTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREAN 236
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
V+PN T + VL C + + G++ + + L + +V ++ K G L A
Sbjct: 237 VQPNASTLSSVLLGCSNLSALGFGKQIHQWC-MKLPLSRNLTVGTSLVSMYCKCGDLSSA 295
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
++ M +V+ W + ++ +H K+A+ + + D GV
Sbjct: 296 CKLFGEMHTR-DVVAWNAMISGYAQHGDG-------KEAINLFERMKDEGV 338
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 6/152 (3%)
Query: 1 MQLFSQMHRQS-VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
++LF M R++ V ++ ++ +L C++ + L +H +KL ++ V TSL+
Sbjct: 225 LRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVS 284
Query: 60 EYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA----S 114
Y A KLF E+ R+ V WN MI GY++ G+ EA + FERM V +
Sbjct: 285 MYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWIT 344
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
+ A++ A ++ G D G++ F M G+ P
Sbjct: 345 FVAVLTACIHTGLCDFGIRCFEGMQELYGIEP 376
>gi|356533546|ref|XP_003535324.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Glycine max]
Length = 483
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 135/394 (34%), Positives = 219/394 (55%), Gaps = 7/394 (1%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
FS M +++ D +++ + KS ++ + +H+H+++LGF H V + L Y
Sbjct: 92 SFFSLMKTRAISPDEYTLAPLFKSASNLRYYVLGGCVHAHVVRLGFTRHASVRVAALEVY 151
Query: 62 V-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
G A K+FDE+ + + V WN MI+G+ K G++ F +M R V SW+ M++
Sbjct: 152 ASCERMGDASKVFDEMRDPDVVVWNLMIRGFCKMGDLETGMKVFGQMKERTVVSWNLMMS 211
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI-VKN 179
+ L+LF EM+ +G PD ++ VL C+ LG+V + G+ H + K
Sbjct: 212 CLAKNNKEEKALELFNEMLE-QGFEPDDASLVTVLPVCARLGAVDI--GEWIHSYANSKG 268
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + LVD Y KCG L+ A +F M +NV+SW A+I G A+ G E ++LF
Sbjct: 269 FLQDTINVGNSLVDFYCKCGNLQAAWSIFNDMASKNVVSWNAMISGLAYNGEGEVGVNLF 328
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
E M G +PN+ TF GVL C H GLVD GR F + ++ + P+++HYGC+VDL G+
Sbjct: 329 EEMVHGGFEPNDSTFVGVLACCAHVGLVDRGRDLFASMSVKFKVSPKLEHYGCVVDLLGR 388
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
G + EA ++I +M L+P +WG+ L+AC+ + ++AE K+ +R+ +P N G +
Sbjct: 389 CGHVREARDLITSMPLKPTAALWGALLSACRTYGDREIAENAAKELVRL-EPWNSGN-YV 446
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
L+ ++Y +W+ E+VR LM V+K G S
Sbjct: 447 LLSNVYAEEGRWDEVEKVRVLMRGGGVKKVPGQS 480
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 128/321 (39%), Gaps = 28/321 (8%)
Query: 19 ILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-----VTSFGFARKLF 73
IL +L ++LT IH H L+ G + +L +V + +A +LF
Sbjct: 11 ILRLLHGGKTRSHLTEIH---GHFLRHGLQQ----SNQILAHFVSVCASLRRVPYATRLF 63
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA----YD 129
N + +N +IK +S + FF M R ++ +A + + Y
Sbjct: 64 AHTHNPNILLFNAIIKAHSLHPPFHASFSFFSLMKTRAISPDEYTLAPLFKSASNLRYYV 123
Query: 130 PGLKLFREMISNEGLTPDQMTIGA--VLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
G + ++ + + A V + C +G + + +V +
Sbjct: 124 LGGCVHAHVVRLGFTRHASVRVAALEVYASCERMGDASKVFDEMRDPDVV---------V 174
Query: 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
+++ + K G L+ + VF M+ER V+SW ++ A E AL LF M G
Sbjct: 175 WNLMIRGFCKMGDLETGMKVFGQMKERTVVSWNLMMSCLAKNNKEEKALELFNEMLEQGF 234
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
+P++ + VL C G VD G + + L+ I +VD + K G L+ A+
Sbjct: 235 EPDDASLVTVLPVCARLGAVDIGEWIHSYANSKGFLQDTINVGNSLVDFYCKCGNLQAAW 294
Query: 308 EVIRTMRLEPNVIIWGSFLAA 328
+ M NV+ W + ++
Sbjct: 295 SIFNDM-ASKNVVSWNAMISG 314
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 101/243 (41%), Gaps = 44/243 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISH-VYVATSLLH 59
++LF++M Q D S++ +L C + + +HS+ GF+ + V SL+
Sbjct: 223 LELFNEMLEQGFEPDDASLVTVLPVCARLGAVDIGEWIHSYANSKGFLQDTINVGNSLVD 282
Query: 60 EYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y + A +F+++ +N V+WN MI G + +G
Sbjct: 283 FYCKCGNLQAAWSIFNDMASKNVVSWNAMISGLAYNGE---------------------- 320
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGL---LMGKSAHGF 175
+ G+ LF EM+ G P+ T VL+ C+H+G V L + F
Sbjct: 321 ---------GEVGVNLFEEMVHG-GFEPNDSTFVGVLACCAHVGLVDRGRDLFASMSVKF 370
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVIS-WTALICGSAHRGYSED 234
V + E +VD+ +CG ++ A + M + + W AL+ SA R Y +
Sbjct: 371 KVSPKLEH----YGCVVDLLGRCGHVREARDLITSMPLKPTAALWGALL--SACRTYGDR 424
Query: 235 ALS 237
++
Sbjct: 425 EIA 427
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 45/221 (20%), Positives = 83/221 (37%), Gaps = 35/221 (15%)
Query: 173 HGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
HG +++ + + QI V + A + YA +F N++ + A+I +
Sbjct: 28 HGHFLRHGLQQSNQILAHFVSVCASLRRVPYATRLFAHTHNPNILLFNAIIKAHSLHPPF 87
Query: 233 EDALSLFEMMQATGVKPNEMTFTG-----------VLTACVHTGLVDEG----------- 270
+ S F +M+ + P+E T VL CVH +V G
Sbjct: 88 HASFSFFSLMKTRAISPDEYTLAPLFKSASNLRYYVLGGCVHAHVVRLGFTRHASVRVAA 147
Query: 271 ----------RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVI 320
K+ DE D P + + M+ F K G LE +V M+ E V+
Sbjct: 148 LEVYASCERMGDASKVFDEMRD--PDVVVWNLMIRGFCKMGDLETGMKVFGQMK-ERTVV 204
Query: 321 IWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
W ++ ++ + + A + + L +D + T++
Sbjct: 205 SWNLMMSCLAKNNKEEKALELFNEMLEQGFEPDDASLVTVL 245
>gi|224141027|ref|XP_002323876.1| predicted protein [Populus trichocarpa]
gi|222866878|gb|EEF04009.1| predicted protein [Populus trichocarpa]
Length = 410
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 135/368 (36%), Positives = 221/368 (60%), Gaps = 15/368 (4%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFN-----NLTVI---HHLHSHILKLGFISHVY 52
+ L +QM + V D F+ ++K+ + NL ++ +H +LKLGF SH++
Sbjct: 48 LHLVNQMRQNGVDPDEFTFNFLIKARSRVRVNINRNLPLVVECDEIHGAVLKLGFSSHLF 107
Query: 53 VATSLLHEYVVTSFGF-ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRN 111
V +L+H Y A ++FDE + V+W+ ++ + ++G + AR F++MP R+
Sbjct: 108 VRNALIHLYAARGNPVVAWRVFDETVGVDVVSWSGLVLAHVRAGELERARWVFDQMPERD 167
Query: 112 VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKS 171
V SW+ M++AY A L+L+ M+ ++G+ PD++T+ +V+S C++LG L MG S
Sbjct: 168 VVSWTTMVSAYSQAKYSREALELYVTML-DKGVRPDEVTLVSVISACTNLGD--LQMGYS 224
Query: 172 AHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGY 231
H +I +N + + L+DMYAKCG + A VF M +++++W ++I A+
Sbjct: 225 VHSYIDENGFRWMVSLCNALIDMYAKCGCMDRAWQVFNSMSRKSLVTWNSMISACANNRN 284
Query: 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG 291
EDA LF M GV P+ +TF VLTA H GLVDEG + F+ + ++ +E RI+HYG
Sbjct: 285 PEDAFGLFSRMFNYGVAPDGVTFLAVLTAYAHVGLVDEGYRLFESMQRDHGIEARIEHYG 344
Query: 292 CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351
C+V++ G+AG+LEEA+E+I +M L N ++WG LAAC++H M ERV+K+ L +
Sbjct: 345 CVVNMLGQAGWLEEAFELITSMPLPSNDVVWGVLLAACRKHGDVYMGERVVKKLLEL--- 401
Query: 352 ENDGGVFT 359
+ DGG +T
Sbjct: 402 KLDGGYYT 409
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 132/291 (45%), Gaps = 41/291 (14%)
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
+A++LFD+LP N +NT+I+GY+KS ++ S+S + +
Sbjct: 13 LAYAQRLFDQLPHPNTFFYNTLIRGYAKS----------------SIPSYSLHLVNQMRQ 56
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIG-AVLSGCSHLGSVGLLMGKSAHGFIVKN----- 179
DP F +I + ++ C + L +G S+H F V+N
Sbjct: 57 NGVDPDEFTFNFLIKARSRVRVNINRNLPLVVECDEIHGAVLKLGFSSHLF-VRNALIHL 115
Query: 180 ---------EWELNEQIATI-------LVDMYAKCGFLKYALMVFELMEERNVISWTALI 223
W + ++ + LV + + G L+ A VF+ M ER+V+SWT ++
Sbjct: 116 YAARGNPVVAWRVFDETVGVDVVSWSGLVLAHVRAGELERARWVFDQMPERDVVSWTTMV 175
Query: 224 CGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDL 283
+ YS +AL L+ M GV+P+E+T V++AC + G + G IDE
Sbjct: 176 SAYSQAKYSREALELYVTMLDKGVRPDEVTLVSVISACTNLGDLQMGYSVHSYIDEN-GF 234
Query: 284 EPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
+ ++D++ K G ++ A++V +M +++ W S ++AC ++
Sbjct: 235 RWMVSLCNALIDMYAKCGCMDRAWQVFNSMS-RKSLVTWNSMISACANNRN 284
>gi|224141025|ref|XP_002323875.1| predicted protein [Populus trichocarpa]
gi|222866877|gb|EEF04008.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 135/368 (36%), Positives = 221/368 (60%), Gaps = 15/368 (4%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFN-----NLTVI---HHLHSHILKLGFISHVY 52
+ L +QM + V D F+ ++K+ + NL ++ +H +LKLGF SH++
Sbjct: 80 LHLVNQMRQNGVDPDEFTFNFLIKARSRVRVNINRNLPLVVECDEIHGAVLKLGFSSHLF 139
Query: 53 VATSLLHEYVVTSFGF-ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRN 111
V +L+H Y A ++FDE + V+W+ ++ + ++G + AR F++MP R+
Sbjct: 140 VRNALIHLYAARGNPVVAWRVFDETVGVDVVSWSGLVLAHVRAGELERARWVFDQMPERD 199
Query: 112 VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKS 171
V SW+ M++AY A L+L+ M+ ++G+ PD++T+ +V+S C++LG L MG S
Sbjct: 200 VVSWTTMVSAYSQAKYSREALELYVTML-DKGVRPDEVTLVSVISACTNLGD--LQMGYS 256
Query: 172 AHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGY 231
H +I +N + + L+DMYAKCG + A VF M +++++W ++I A+
Sbjct: 257 VHSYIDENGFRWMVSLCNALIDMYAKCGCMDRAWQVFNSMSRKSLVTWNSMISACANNRN 316
Query: 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG 291
EDA LF M GV P+ +TF VLTA H GLVDEG + F+ + ++ +E RI+HYG
Sbjct: 317 PEDAFGLFSRMFNYGVAPDGVTFLAVLTAYAHVGLVDEGYRLFESMQRDHGIEARIEHYG 376
Query: 292 CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351
C+V++ G+AG+LEEA+E+I +M L N ++WG LAAC++H M ERV+K+ L +
Sbjct: 377 CVVNMLGQAGWLEEAFELITSMPLPSNDVVWGVLLAACRKHGDVYMGERVVKKLLEL--- 433
Query: 352 ENDGGVFT 359
+ DGG +T
Sbjct: 434 KLDGGYYT 441
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/330 (24%), Positives = 150/330 (45%), Gaps = 44/330 (13%)
Query: 30 NNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDELPERNAVTWNT 86
N+++ + +H+H L G H + +L V+ G +A++LFD+LP N +NT
Sbjct: 6 NSMSRLKQIHAHSLLAGLHDHSIILAKMLRFAAVSPSGDLAYAQRLFDQLPHPNTFFYNT 65
Query: 87 MIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
+I+GY+KS ++ S+S + + DP F +I
Sbjct: 66 LIRGYAKS----------------SIPSYSLHLVNQMRQNGVDPDEFTFNFLIKARSRVR 109
Query: 147 DQMTIG-AVLSGCSHLGSVGLLMGKSAHGFIVKN--------------EWELNEQIATI- 190
+ ++ C + L +G S+H F V+N W + ++ +
Sbjct: 110 VNINRNLPLVVECDEIHGAVLKLGFSSHLF-VRNALIHLYAARGNPVVAWRVFDETVGVD 168
Query: 191 ------LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQA 244
LV + + G L+ A VF+ M ER+V+SWT ++ + YS +AL L+ M
Sbjct: 169 VVSWSGLVLAHVRAGELERARWVFDQMPERDVVSWTTMVSAYSQAKYSREALELYVTMLD 228
Query: 245 TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLE 304
GV+P+E+T V++AC + G + G IDE + ++D++ K G ++
Sbjct: 229 KGVRPDEVTLVSVISACTNLGDLQMGYSVHSYIDEN-GFRWMVSLCNALIDMYAKCGCMD 287
Query: 305 EAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
A++V +M +++ W S ++AC ++
Sbjct: 288 RAWQVFNSMS-RKSLVTWNSMISACANNRN 316
>gi|356544269|ref|XP_003540576.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 522
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 137/368 (37%), Positives = 218/368 (59%), Gaps = 14/368 (3%)
Query: 35 IHHLHSHILKLGFISHVYVATSLLHEYVV-TSFGFARKLFDELPERNAVTWNTMIKGYSK 93
+H LHSHI++ G +S YV TSLL Y S AR+LFD+ P +N W +++ GY
Sbjct: 114 LHQLHSHIIRRGHVSDFYVITSLLAAYSNHGSTRAARRLFDQSPYKNVACWTSLVTGYCN 173
Query: 94 SGNVCEARDFFERMPLR--NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTI 151
+G V +AR+ F+ +P R N S+SAM++ Y+ G + G++LFRE+ + + P+ +
Sbjct: 174 NGLVNDARNLFDAIPERERNDVSYSAMVSGYVKNGCFREGIQLFREL-KDRNVKPNNSLL 232
Query: 152 GAVLSGCSHLGSVGLLMGKSAHGFIVKNE----WELNEQIATILVDMYAKCGFLKYALMV 207
+VLS C+ +G+ GK H ++ +N+ +EL ++ T L+D Y KCG ++ A V
Sbjct: 233 ASVLSACASVGA--FEEGKWIHAYVDQNKSQCYYEL--ELGTALIDFYTKCGCVEPAQRV 288
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
F M+ ++V +W+A++ G A +++AL LFE M+ G +PN +TF GVLTAC H L
Sbjct: 289 FGNMKTKDVAAWSAMVLGLAINAKNQEALELFEEMEKVGPRPNAVTFIGVLTACNHKDLF 348
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
E K F + ++Y + I+HYGC+VD+ ++G +EEA E I++M +EP+ +IWGS L
Sbjct: 349 GEALKLFGYMSDKYGIVASIEHYGCVVDVLARSGKIEEALEFIKSMEVEPDGVIWGSLLN 408
Query: 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVR 387
C H ++ +V K + + +P GG + L+ ++Y KWE RK M ++ V
Sbjct: 409 GCFLHNNIELGHKVGKYLVEL-EP-GHGGRYVLLSNVYATMGKWEAVLETRKFMKDRGVP 466
Query: 388 KARGSSVI 395
GSS I
Sbjct: 467 AVSGSSFI 474
>gi|356565111|ref|XP_003550788.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 478
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 139/406 (34%), Positives = 219/406 (53%), Gaps = 14/406 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++ ++ M D F+ +L +C + +H+ +L G+ S+V+V TSL+
Sbjct: 26 VECYTHMVSSKAEPDGFTHSSLLSACARGGLVKEGEQVHATVLVKGYCSNVFVDTSLITF 85
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y AR +FD +P+R+ V+WN+M+ GY + + AR F+ MP RNV SW+ M+
Sbjct: 86 YAGRGGVERARHVFDGMPQRSVVSWNSMLAGYVRCADFDGARRVFDVMPCRNVVSWTTMV 145
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG----- 174
A G L LF EM + DQ+ + A LS C+ LG L +G+ H
Sbjct: 146 AGCARNGKSRQALLLFGEM-RRACVELDQVALVAALSACAELGD--LKLGRWIHWYVQQR 202
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
F+ +N + + ++ L+ MYA CG L A VF M ++ +SWT++I A +G ++
Sbjct: 203 FVARNWQQPSVRLNNALIHMYASCGILHEAYQVFVKMPRKSTVSWTSMIMAFAKQGLGKE 262
Query: 235 ALSLFEMM-----QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQH 289
AL LF+ M + GV+P+E+TF GVL AC H G VDEG + F + + + P I+H
Sbjct: 263 ALDLFKTMLSDGVKVDGVRPDEITFIGVLCACSHAGFVDEGHQIFASMKHTWGISPSIEH 322
Query: 290 YGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349
YGCMVDL +AG L+EA +I TM L PN IWG+ L C+ H+ ++A +V + + +
Sbjct: 323 YGCMVDLLSRAGLLDEARGLIETMPLNPNDAIWGALLGGCRIHRNSELASQVENKLVPEL 382
Query: 350 KPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ G L+ ++Y ++W+ VR+ M+ V+K G S I
Sbjct: 383 NGDQAAGYLVLLSNIYAFGQRWQDVITVRQKMIEMGVKKPPGRSWI 428
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 4/132 (3%)
Query: 211 MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
M+ W +I G A A+ + M ++ +P+ T + +L+AC GLV EG
Sbjct: 1 MDNPTTTVWNHVIRGYARSHTPWKAVECYTHMVSSKAEPDGFTHSSLLSACARGGLVKEG 60
Query: 271 RK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAAC 329
+ + ++ + Y + ++ + G +E A V M + +V+ W S LA
Sbjct: 61 EQVHATVLVKGYCSNVFVDT--SLITFYAGRGGVERARHVFDGMP-QRSVVSWNSMLAGY 117
Query: 330 KEHKQFDMAERV 341
FD A RV
Sbjct: 118 VRCADFDGARRV 129
>gi|91806359|gb|ABE65907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 555
Score = 257 bits (657), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 133/327 (40%), Positives = 201/327 (61%), Gaps = 6/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR+LFDE+ + +TW TMI GY ++ AR F+ MP RN+ SW+ MI Y
Sbjct: 195 ARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQP 254
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
G+ LF+EM + L PD +TI +VL S G++ L G+ H F+ + + + ++
Sbjct: 255 QEGITLFQEMQATTSLDPDDVTILSVLPAISDTGALSL--GEWCHCFVQRKKLDKKVKVC 312
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
T ++DMY+KCG ++ A +F+ M E+ V SW A+I G A G + AL LF M K
Sbjct: 313 TAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEE-K 371
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+E+T V+TAC H GLV+EGRK+F ++ E L +I+HYGCMVDL G+AG L+EA +
Sbjct: 372 PDEITMLAVITACNHGGLVEEGRKWFHVM-REMGLNAKIEHYGCMVDLLGRAGSLKEAED 430
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+I M EPN II SFL+AC ++K + AER++K+A+ + +P+NDG + L+ +LY +
Sbjct: 431 LITNMPFEPNGIILSSFLSACGQYKDIERAERILKKAVEL-EPQNDGN-YVLLRNLYAAD 488
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
++W+ V+ +M +K G S+I
Sbjct: 489 KRWDDFGMVKNVMRKNQAKKEVGCSLI 515
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 106/236 (44%), Gaps = 12/236 (5%)
Query: 100 ARDFFERMPLRNVASWS-AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGC 158
AR F++ P R+ + S +MI AYL Y L+R++ PD T + C
Sbjct: 29 ARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLTKSC 88
Query: 159 SHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVIS 218
S S+ + G H I + + + ++T +VDMYAK G + A F+ M R+ +S
Sbjct: 89 SL--SMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVS 146
Query: 219 WTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMID 278
WTALI G G + A LF+ M + + + ++ V +G + R+ F +
Sbjct: 147 WTALISGYIRCGELDLASKLFDQMPHV---KDVVIYNAMMDGFVKSGDMTSARRLFDEMT 203
Query: 279 EEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
+ + + M+ + ++ A ++ M E N++ W + + ++KQ
Sbjct: 204 HK-----TVITWTTMIHGYCNIKDIDAARKLFDAMP-ERNLVSWNTMIGGYCQNKQ 253
>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
Length = 585
Score = 257 bits (657), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 129/327 (39%), Positives = 196/327 (59%), Gaps = 5/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR FD +P R+ V+WN+MI GY+K G + AR+ F++M +NV SWS MI Y
Sbjct: 227 ARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFBKMLQKNVISWSIMIDGYAXHRDS 286
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L LFR+M+ +G+ PD++++ +S CS LG+ L G+ H ++ +N L+ +
Sbjct: 287 KEALNLFRQMLC-QGIKPDRVSVVGAVSACSQLGA--LDQGRWIHLYMKRNRMLLDIVVQ 343
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
T LVDMY KCG A +F M ERNV+SW +I G G+ ++AL F M+ +
Sbjct: 344 TALVDMYLKCGSXDEARXIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFXQMEMERIP 403
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
+++ F GVL AC H LV EG F + Y LEP+++HYGC+VDL G+AG L++
Sbjct: 404 MDDLLFLGVLMACSHANLVTEGLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQN 463
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+I++M ++PN +WGS L AC+ H+ +AE V+++ + +D GV+ L+ ++Y
Sbjct: 464 IIQSMPMKPNAALWGSLLLACRIHQNVTLAEIVVERLAEL--KADDSGVYVLMSNIYADV 521
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
WEG R+RKLM + ++K G SVI
Sbjct: 522 GMWEGMLRIRKLMKERKMKKDIGRSVI 548
>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 742
Score = 257 bits (657), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 135/395 (34%), Positives = 233/395 (58%), Gaps = 7/395 (1%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV- 62
F+ M + D +++ +L +C +L LH + + G + + +L+ Y
Sbjct: 225 FNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAK 284
Query: 63 VTSFGFARKLFDELPE-RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
G A ++FD L R +WN MI GY K G+V AR F++M R++ +++++I
Sbjct: 285 CGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITG 344
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y++ G L LF +M ++ L D T+ ++L+ C+ LG+ L G++ H I +
Sbjct: 345 YIHGGRLREALLLFMQMRRHD-LRADNFTMVSLLTACASLGA--LPQGRALHACIEQRLV 401
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
E++ + T L+DMY KCG ++ A +VF+ M R+V +W+A+I G A G + AL F
Sbjct: 402 EVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFW 461
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M+ G +PN +T+ +LTAC H+ L+DEGR YF+ + +++ P I+HYGCM+DL G++G
Sbjct: 462 MKVDGFQPNSVTYIAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSG 521
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L+EA +++RTM ++PN +IW S L+AC+ HK ++A + L++ +P+ D V+ +
Sbjct: 522 LLDEAMDLVRTMPMQPNAVIWASILSACRVHKDANLARNAAEHLLKL-EPDED-AVYVQL 579
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
++Y + +WE A ++R+LM + V+KA G S I+
Sbjct: 580 YNIYIDSRQWEDASQIRRLMEERGVKKAAGYSSIT 614
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 102/360 (28%), Positives = 176/360 (48%), Gaps = 40/360 (11%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFN-NLTVIHHLHSHILKLGFISHV-YVATSLLHE 60
L+ +M R V +D+F+ + K C ++ + LH+ + S V V+ ++H
Sbjct: 90 LYRRMRRTGVCTDAFTFHFLFKCCARGRAHVLLCQMLHAACFRTMLPSAVPLVSNPIIHM 149
Query: 61 YVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
YV G AR+ FD++P ++AV W T+I G +K G + +A P RNV SW+ +I
Sbjct: 150 YVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLI 209
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y AG + F M+S +G+ PD++T+ +LS C+ L L+ G+S H + +
Sbjct: 210 SGYSRAGRAAEAVDCFNSMLS-DGIEPDEVTVIGLLSACAQLKD--LVFGRSLHKLVGEK 266
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFEL----------------------------- 210
++ ++ L+DMYAKCG + A VF+
Sbjct: 267 GMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYL 326
Query: 211 ---MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
ME+R+++++ +LI G H G +AL LF M+ ++ + T +LTAC G +
Sbjct: 327 FDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGAL 386
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
+GR I++ +E I ++D++ K G +EEA V + M + +V W + +A
Sbjct: 387 PQGRALHACIEQRL-VEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVR-DVHTWSAMIA 444
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 111/274 (40%), Gaps = 35/274 (12%)
Query: 103 FFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLG 162
F+RMP +A+ A + + + L L+R M G+ D T + C+ G
Sbjct: 59 LFDRMPCSTFLFDTALRACFRASSGPESPLILYRRM-RRTGVCTDAFTFHFLFKCCAR-G 116
Query: 163 SVGLLMGKSAHGFIVK-------------------------------NEWELNEQIA-TI 190
+L+ + H + ++ + + +A T
Sbjct: 117 RAHVLLCQMLHAACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTT 176
Query: 191 LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250
++ AK G L A + RNVISWT LI G + G + +A+ F M + G++P+
Sbjct: 177 VISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPD 236
Query: 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI 310
E+T G+L+AC + GR K++ E+ L + ++D++ K G + A+EV
Sbjct: 237 EVTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSG-KLVVALIDMYAKCGDIGRAWEVF 295
Query: 311 RTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
+ W + + + D+A + Q
Sbjct: 296 DALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQ 329
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 108/252 (42%), Gaps = 39/252 (15%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF QM R + +D+F+++ +L +C L LH+ I + +Y+ T+LL Y+
Sbjct: 357 LFMQMRRHDLRADNFTMVSLLTACASLGALPQGRALHACIEQRLVEVDIYLGTALLDMYL 416
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
K G V EA F+ M +R+V +WSAMIA
Sbjct: 417 ------------------------------KCGRVEEASLVFQAMSVRDVHTWSAMIAGL 446
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSH--LGSVGLLMGKSAHGFIVKNE 180
G L+ F M +G P+ +T A+L+ CSH L G L + ++ N
Sbjct: 447 AFNGMGKAALEYFFWM-KVDGFQPNSVTYIAILTACSHSCLLDEGRLYFEEMR--LLHNI 503
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSEDALSLF 239
L E ++D+ + G L A+ + M + N + W +++ SA R + + L+
Sbjct: 504 RPLIEHYGC-MIDLLGRSGLLDEAMDLVRTMPMQPNAVIWASIL--SACRVHKDANLARN 560
Query: 240 EMMQATGVKPNE 251
++P+E
Sbjct: 561 AAEHLLKLEPDE 572
>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
Length = 444
Score = 257 bits (657), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 124/320 (38%), Positives = 197/320 (61%), Gaps = 5/320 (1%)
Query: 76 LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF 135
+PE++ V+ MI Y+K G + EAR F+ + R+ W+ MI Y G + GL LF
Sbjct: 1 MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLF 60
Query: 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY 195
R+M+ N + P+++T+ AVLS C G+ L G+ H +I N +N ++ T L+DMY
Sbjct: 61 RQML-NAKVRPNEVTVLAVLSACGQTGA--LETGRWVHSYIENNGIGINVRVGTSLIDMY 117
Query: 196 AKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT 255
+KCG L+ A +VFE + ++V++W +++ G A G+S+DAL LF+ M G +P ++TF
Sbjct: 118 SKCGSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFI 177
Query: 256 GVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRL 315
GVL AC H GLV EG K+F + +EY +EP+++HYGCMV+L G+AG+LEEAYE+++ M +
Sbjct: 178 GVLNACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEI 237
Query: 316 EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAE 375
+ + ++WG+ L AC+ H + E++ + + + + G + L+ ++Y WEG
Sbjct: 238 DQDPVLWGTLLGACRLHGNIALGEQIAEYLVS--QNLANSGTYVLLSNIYAAAGNWEGVA 295
Query: 376 RVRKLMLNQNVRKARGSSVI 395
RVR LM K G S I
Sbjct: 296 RVRTLMKESGFEKEPGCSSI 315
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 99/225 (44%), Gaps = 39/225 (17%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF QM V + ++L +L +C L +HS+I G +V V TSL+ Y
Sbjct: 59 LFRQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYS 118
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
S AR +F+ + ++ V WN+M+ GY+ G +A
Sbjct: 119 KCGSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDA--------------------- 157
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
L+LF+EM G P +T VL+ CSH GL+ + +K+E+
Sbjct: 158 ----------LRLFKEMCM-IGYQPTDITFIGVLNACSH---AGLVSEGWKFFYSMKDEY 203
Query: 182 ELNEQIA--TILVDMYAKCGFLKYALMVFELME-ERNVISWTALI 223
+ ++ +V++ + G+L+ A + + ME +++ + W L+
Sbjct: 204 GIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLL 248
>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 257 bits (657), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 129/327 (39%), Positives = 196/327 (59%), Gaps = 5/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR FD +P R+ V+WN+MI GY+K G + AR+ F++M +NV SWS MI Y
Sbjct: 227 ARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFDKMLQKNVISWSIMIDGYAQHRDS 286
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L LFR+M+ +G+ PD++++ +S CS LG+ L G+ H ++ +N L+ +
Sbjct: 287 KEALNLFRQMLC-QGIKPDRVSVVGAVSACSQLGA--LDQGRWIHLYMKRNRMLLDIVVQ 343
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
T LVDMY KCG A +F M ERNV+SW +I G G+ ++AL F M+ +
Sbjct: 344 TALVDMYLKCGSRDEARRIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFTQMEMERIP 403
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
+++ F GVL AC H LV EG F + Y LEP+++HYGC+VDL G+AG L++
Sbjct: 404 MDDLLFLGVLMACSHANLVTEGLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQN 463
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+I++M ++PN +WGS L AC+ H+ +AE V+++ + +D GV+ L+ ++Y
Sbjct: 464 IIQSMPMKPNAALWGSLLLACRIHQNVTLAEIVVERLAEL--KADDSGVYVLMSNIYADV 521
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
WEG R+RKLM + ++K G SVI
Sbjct: 522 GMWEGMLRIRKLMKERKMKKDIGRSVI 548
>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
Length = 613
Score = 257 bits (657), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 131/328 (39%), Positives = 194/328 (59%), Gaps = 5/328 (1%)
Query: 69 ARKLFDELPER-NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
A + F PE+ +AV W M+ GY GNV +A +FE MP+RN+ SW+A++A Y+
Sbjct: 161 AEEWFRNAPEKEDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSH 220
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
D L+LFR M+ + P+ T+ +VL GCS+L ++G GK H + +K N +
Sbjct: 221 ADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGF--GKQIHQWCMKLLLSRNLTV 278
Query: 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
T LV MY KCG L A ++F M R+V++W A+I G A G ++A++LFE M+ GV
Sbjct: 279 GTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGV 338
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
+PN +TF VLTAC+HTGL D G + F+ + E Y +EPR+ HY CMVDL +AG LE A
Sbjct: 339 EPNWITFVVVLTACIHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAV 398
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM 367
+ IR+M EP+ +G+ LAAC+ +K + AE + + K G + + ++Y +
Sbjct: 399 DFIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIE--KDPQSAGAYVQLANIYAV 456
Query: 368 NEKWEGAERVRKLMLNQNVRKARGSSVI 395
+W+ RVR+ M + V K G S I
Sbjct: 457 ANQWDDVSRVRRWMKDNTVVKTPGYSWI 484
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 134/290 (46%), Gaps = 20/290 (6%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR LFD +P + V++NT++ + SG+ AR F MP+R+VASW+ M++ +GA
Sbjct: 68 ARHLFDRIPTPDVVSYNTLLLCHFASGDADGARRLFASMPVRDVASWNTMVSGLSKSGAV 127
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ +F M ++ + M G SG M + F E E + +
Sbjct: 128 EEAKVVFLAMPVRNSVSWNAMVSGFACSG---------DMSTAEEWFRNAPEKE-DAVLW 177
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE-MMQATGV 247
T +V Y G + A+ FE M RN++SW A++ G +++DAL LF M++ V
Sbjct: 178 TAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANV 237
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
+PN T + VL C + + G++ + + L + +V ++ K G L A
Sbjct: 238 QPNASTLSSVLLGCSNLSALGFGKQIHQWC-MKLLLSRNLTVGTSLVSMYCKCGDLSSAC 296
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
+ M +V+ W + ++ +H K+A+ + + D GV
Sbjct: 297 ILFGEMHTR-DVVAWNAMISGYAQHGDG-------KEAINLFERMKDEGV 338
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 6/152 (3%)
Query: 1 MQLFSQMHRQS-VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
++LF M R++ V ++ ++ +L C++ + L +H +KL ++ V TSL+
Sbjct: 225 LRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVS 284
Query: 60 EYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA----S 114
Y A LF E+ R+ V WN MI GY++ G+ EA + FERM V +
Sbjct: 285 MYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWIT 344
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
+ ++ A ++ G D G++ F M G+ P
Sbjct: 345 FVVVLTACIHTGLCDFGIQCFEGMQELYGIEP 376
>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 763
Score = 257 bits (656), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 196/327 (59%), Gaps = 5/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A +LF+ +P RN +WNTMI GY ++G + +AR F+ MP R+ SW+A+I+ Y G Y
Sbjct: 313 AGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHY 372
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ L +F EM +G + ++ T LS C+ + + L +GK HG +VK +E +
Sbjct: 373 EEALNMFVEM-KRDGESSNRSTFSCALSTCADIAA--LELGKQVHGQVVKAGFETGCFVG 429
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+ MY KCG A VFE +EE++V+SW +I G A G+ AL LFE M+ GVK
Sbjct: 430 NALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVK 489
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+E+T GVL+AC H+GL+D G +YF +D +Y+++P +HY CM+DL G+AG LEEA
Sbjct: 490 PDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAEN 549
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
++R M +P WG+ L A + H ++ E+ + +M +P+N G++ L+ +LY +
Sbjct: 550 LMRNMPFDPGAASWGALLGASRIHGNTELGEKAAEMVFKM-EPQNS-GMYVLLSNLYAAS 607
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
+W ++R M V+K G S +
Sbjct: 608 GRWVDVGKMRSKMREAGVQKVTGYSWV 634
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 151/295 (51%), Gaps = 28/295 (9%)
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
G AR+LFD +P R+ ++WNTMI GY++ G++ +A+ F P+R+V +W+AM++ Y+
Sbjct: 217 LGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQN 276
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
G D K F EM ++++ A+L+G + ++ G+ +N N
Sbjct: 277 GMVDEARKYFDEMP-----VKNEISYNAMLAGYVQYKKM-VIAGELFEAMPCRNISSWNT 330
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
I Y + G + A +F++M +R+ +SW A+I G A G+ E+AL++F M+
Sbjct: 331 MITG-----YGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRD 385
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMV-----DLFGK 299
G N TF+ L+ C ++ G++ + +++ ++ GC V ++ K
Sbjct: 386 GESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFET-------GCFVGNALLGMYFK 438
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM--VKPE 352
G +EA +V + E +V+ W + +A H F V+ ++++ VKP+
Sbjct: 439 CGSTDEANDVFEGIE-EKDVVSWNTMIAGYARHG-FGRQALVLFESMKKAGVKPD 491
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 140/313 (44%), Gaps = 34/313 (10%)
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
F AR LFD++PER+ +WN M+ GY ++ + EA F+ MP ++V SW+AM++ Y
Sbjct: 93 FSLARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQN 152
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
G D ++F +M ++ + + V +G + ++ F ++ WEL
Sbjct: 153 GFVDEAREVFNKMPHRNSISWNGLLAAYVHNG---------RLKEARRLFESQSNWELIS 203
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
L+ Y K L A +F+ M R+VISW +I G A G A LF
Sbjct: 204 W--NCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIR 261
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305
V T+T +++ V G+VDE RKYF +E ++ I Y M+ AG+++
Sbjct: 262 DV----FTWTAMVSGYVQNGMVDEARKYF----DEMPVKNEIS-YNAML-----AGYVQY 307
Query: 306 AYEVIRTMRLEP----NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
VI E N+ W + + ++ A ++ + P+ D + I
Sbjct: 308 KKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFD-----MMPQRDCVSWAAI 362
Query: 362 CDLYTMNEKWEGA 374
Y N +E A
Sbjct: 363 ISGYAQNGHYEEA 375
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 119/294 (40%), Gaps = 57/294 (19%)
Query: 75 ELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKL 134
+ + + VTWN I + ++G+ A F MP R+ S++AMI+ YL + L
Sbjct: 40 KFKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDL 99
Query: 135 FREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDM 194
F +M + + + M G
Sbjct: 100 FDKMPERDLFSWNVMLTG------------------------------------------ 117
Query: 195 YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTF 254
Y + L A +F+LM +++V+SW A++ G A G+ ++A +F M N +++
Sbjct: 118 YVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHR----NSISW 173
Query: 255 TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR 314
G+L A VH G + E R+ F E + + C++ + K L +A ++ M
Sbjct: 174 NGLLAAYVHNGRLKEARRLF-----ESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMP 228
Query: 315 LEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+ +VI W + ++ + A+R+ ++ P D +T + Y N
Sbjct: 229 VR-DVISWNTMISGYAQVGDLSQAKRLFNES-----PIRDVFTWTAMVSGYVQN 276
>gi|242062638|ref|XP_002452608.1| hypothetical protein SORBIDRAFT_04g028970 [Sorghum bicolor]
gi|241932439|gb|EES05584.1| hypothetical protein SORBIDRAFT_04g028970 [Sorghum bicolor]
Length = 485
Score = 257 bits (656), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 139/363 (38%), Positives = 203/363 (55%), Gaps = 9/363 (2%)
Query: 37 HLHSHILKLGF---ISHVYVATSLLHEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYS 92
+H+ ++K G +S V V+TSL+ Y + ARK+FD +P+R VTWN ++
Sbjct: 78 QIHALLVKSGVPRTVSDVQVSTSLIRAYARLGRVCDARKVFDGMPDRTVVTWNVLLDALV 137
Query: 93 KSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIG 152
+ G++ A + F MP RNV SW+ +IA + G + LF EM GL PD+ T+
Sbjct: 138 RDGDLDAAWEVFVEMPQRNVVSWNTIIAGFTRNGWAQEAVDLFVEMTVAYGLAPDEATMV 197
Query: 153 AVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME 212
+S +G +G+ GKSAHG++++ E+ L+ + L+ MY +CG + A F +
Sbjct: 198 GFVSAVRDIGLLGI--GKSAHGYVLRREFSLDGALGVALISMYTRCGSMGAAHSCFLSVT 255
Query: 213 ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK 272
+NV WT+LI G A G E AL LF M+ G++PN +TF VL AC H GLV EG K
Sbjct: 256 TKNVEHWTSLIAGFAAHGQPEKALRLFAEMRRVGIEPNGVTFVAVLNACNHGGLVSEGFK 315
Query: 273 YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
YF ++ + P IQHYGC+VDL G+AGFL+EA+ + + +P +IW S LAAC H
Sbjct: 316 YFDLM-RSMGIRPMIQHYGCLVDLLGRAGFLKEAFNLASNLPEDPGFVIWSSLLAACHSH 374
Query: 333 KQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGS 392
+MAE + L KP + G + L+ + Y ++WE R R+ M V K G
Sbjct: 375 GDVEMAE-LTASKLADAKPSH-GSSYVLLSNTYARAKQWEDLRRTRRRMEEHGVTKKPGL 432
Query: 393 SVI 395
S I
Sbjct: 433 SWI 435
>gi|357441857|ref|XP_003591206.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480254|gb|AES61457.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 490
Score = 257 bits (656), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 210/390 (53%), Gaps = 7/390 (1%)
Query: 10 QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGF 68
++ D+F+ +LK+ ++ + + LH+H+ LGF H V LL Y
Sbjct: 102 HNILPDNFTFPPLLKATSYLRDYDLGQCLHAHVTALGFYRHSPVEIGLLEVYSNCGKMED 161
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A K+FDE+ R V WN MI G+ K G++ F+RM R+V SW+ MI+
Sbjct: 162 ANKVFDEMLHREVVVWNIMINGFCKMGDLEIGLKLFKRMGQRSVVSWNLMISCLAQRKKD 221
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV-KNEWELNEQI 187
+FREM+ +G PD T+ VL C+ LG V G+ H + K +
Sbjct: 222 GEAFGIFREMLE-QGFEPDDATLVTVLPVCARLGDVD--AGEWIHSYADGKGLLRKVISV 278
Query: 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
LVD Y KCG L+ A VF M ++NV+SW A+I G G E + LFE M GV
Sbjct: 279 GNSLVDFYCKCGNLEAAWKVFNEMTKKNVVSWNAMISGLGLNGKGELGVELFEKMARKGV 338
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
P++ TF GVL C H G VD+GR+ F + ++ L P+++HYGC+VDL G+ G ++EAY
Sbjct: 339 TPSDSTFVGVLACCAHAGFVDKGREIFDSMTVKFKLSPKLEHYGCVVDLLGRCGHVKEAY 398
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM 367
++IR M L PN +WG+ L+AC+ H ++AE K+ +R+ +P N G + L+ ++Y
Sbjct: 399 DLIRNMPLMPNAALWGALLSACRTHGDREVAEIAAKELVRL-EPGNSGN-YVLLSNVYAE 456
Query: 368 NEKWEGAERVRKLMLNQNVRKARGSSVISS 397
KW E+VR LM ++K G S +
Sbjct: 457 ERKWNEVEKVRVLMQGVGIKKNPGQSALQD 486
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 88/389 (22%), Positives = 148/389 (38%), Gaps = 79/389 (20%)
Query: 10 QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGF------ISHVYVATSLLHEYVV 63
Q + S +LH K+ TH + +H+H L+ G +SH + LH+
Sbjct: 6 QKIESKILHLLHNTKTQTH------LPQIHAHFLRHGLHHSNQILSHFVSVCTSLHQ--- 56
Query: 64 TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL 123
+A +F+ N + +N++IK +S ++ FF M +
Sbjct: 57 --IPYATTIFNHTHHPNILLFNSIIKAHSSFPPFHQSFHFFNLMKM-------------- 100
Query: 124 NAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH----GFIVKN 179
+ PD T +L S+L L AH GF +
Sbjct: 101 -----------------THNILPDNFTFPPLLKATSYLRDYDLGQCLHAHVTALGFYRHS 143
Query: 180 EWE-----------------------LNEQIA--TILVDMYAKCGFLKYALMVFELMEER 214
E L+ ++ I+++ + K G L+ L +F+ M +R
Sbjct: 144 PVEIGLLEVYSNCGKMEDANKVFDEMLHREVVVWNIMINGFCKMGDLEIGLKLFKRMGQR 203
Query: 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF 274
+V+SW +I A R +A +F M G +P++ T VL C G VD G
Sbjct: 204 SVVSWNLMISCLAQRKKDGEAFGIFREMLEQGFEPDDATLVTVLPVCARLGDVDAGEWIH 263
Query: 275 KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
D + L I +VD + K G LE A++V M + NV+ W + ++ + +
Sbjct: 264 SYADGKGLLRKVISVGNSLVDFYCKCGNLEAAWKVFNEMT-KKNVVSWNAMISGLGLNGK 322
Query: 335 FDMA-ERVIKQALRMVKPENDGGVFTLIC 362
++ E K A + V P + V L C
Sbjct: 323 GELGVELFEKMARKGVTPSDSTFVGVLAC 351
>gi|413925246|gb|AFW65178.1| hypothetical protein ZEAMMB73_703358 [Zea mays]
Length = 572
Score = 257 bits (656), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 126/329 (38%), Positives = 201/329 (61%), Gaps = 9/329 (2%)
Query: 68 FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
ARK+FDE+P RN V+WN M++GY+ +G+V AR+ F+ MP ++V SW+ M++ Y AG
Sbjct: 242 LARKMFDEMPARNLVSWNAMVRGYAVNGDVDGARELFDAMPEKDVVSWTCMVSGYARAGR 301
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE-- 185
+ L+LFR M S + + P+++T+ +V S C+ L + L G+ AH FI K L++
Sbjct: 302 HAQALELFRTMQSGD-VRPNEVTMVSVFSACARLAA--LKEGRWAHAFIGKRGMVLDDGF 358
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
+ L+DMYAKCG A VF ++ +NV +W ALI G A G + + +FE M+ +
Sbjct: 359 NLGAALIDMYAKCGRPDVAAKVFRSLDRKNVSAWNALIAGLAANGDARRCIDVFEQMKVS 418
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305
KP+ +TF VL AC GLVDEGR+ F+ + + ++P ++HYGCMVDL G+AG ++E
Sbjct: 419 DEKPDSVTFVSVLAACARAGLVDEGRRCFRSMSSGFGVQPELKHYGCMVDLLGRAGLVDE 478
Query: 306 AYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIK--QALRMVKPENDGGVFTLICD 363
A E++R M + P+ + + L AC+ ++ D+AERV + Q+L +P + + +I D
Sbjct: 479 AEELVRGMPMAPDDKVLATLLGACRVRRRPDVAERVRRRIQSLNTKQPSRES--YFMISD 536
Query: 364 LYTMNEKWEGAERVRKLMLNQNVRKARGS 392
+ ++W A + + M N+ K GS
Sbjct: 537 VRATADRWAVALKAKGFMHKYNIMKLDGS 565
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/340 (28%), Positives = 156/340 (45%), Gaps = 38/340 (11%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVI-HHLHSHILKLGFISHVYVATSLLHEYV 62
FS + R D F+ + KS + F + +H+ + G ++ + SLL Y
Sbjct: 80 FSSLLRSGHLPDHFTFPPLAKSASKFPSFPRTGAQVHAQAARRGLLADAFAVNSLLAMYA 139
Query: 63 VTSFGFA-RKLFDELPER-NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ R + + E + V+WNT++ GY++ G + AR F+ MP RN ASWSAM+
Sbjct: 140 ALRDAASMRGVLESCAEAADVVSWNTVVAGYARCGELGNARRAFDGMPRRNGASWSAMVG 199
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
AY AG D +F A +G S + ++ G + HG +
Sbjct: 200 AYAAAGQLDVARDMFDR---------------APAAGRSVVTWNSMVAGLARHGLLPLAR 244
Query: 181 WELNEQIATILVDM------YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
+E A LV YA G + A +F+ M E++V+SWT ++ G A G
Sbjct: 245 KMFDEMPARNLVSWNAMVRGYAVNGDVDGARELFDAMPEKDVVSWTCMVSGYARAGRHAQ 304
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR-------KYFKMIDEEYDLEPRI 287
AL LF MQ+ V+PNE+T V +AC + EGR K ++D+ ++L
Sbjct: 305 ALELFRTMQSGDVRPNEVTMVSVFSACARLAALKEGRWAHAFIGKRGMVLDDGFNLG--- 361
Query: 288 QHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
++D++ K G + A +V R++ + NV W + +A
Sbjct: 362 ---AALIDMYAKCGRPDVAAKVFRSLDRK-NVSAWNALIA 397
>gi|242071929|ref|XP_002451241.1| hypothetical protein SORBIDRAFT_05g026370 [Sorghum bicolor]
gi|241937084|gb|EES10229.1| hypothetical protein SORBIDRAFT_05g026370 [Sorghum bicolor]
Length = 505
Score = 257 bits (656), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 146/402 (36%), Positives = 223/402 (55%), Gaps = 19/402 (4%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+L S + R P D + L +L + F V+ LHS +L+LGF+SH + +LL Y
Sbjct: 103 RLLSTLRRFHAP-DRLTFLPLLGCASSF---PVLSALHSLLLRLGFLSHHPITLALLKPY 158
Query: 62 VVTSFGFARKLFDELPERN--AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVAS----- 114
+ R LFD++P++N V +NT+I K+ ++ AR F+ M +
Sbjct: 159 PMPHV---RALFDDMPQKNKCTVAYNTLITACLKARDIRAARHLFDEMQRHRRSRRSVVS 215
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
W+ +I +G D ++ F M+ + PD T+ AVL C G+ G G+ AH
Sbjct: 216 WNLIITGCARSGRDDMAVQCFERMVREGEVAPDDGTLVAVLPACGKTGNAG--AGRWAHE 273
Query: 175 FIVKNEW-ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE 233
+ K+ E +A ++DMY KCG + A VF +R+V+SW A+I G + G+
Sbjct: 274 YAKKSGLLEGTVHVANAVMDMYCKCGDVDSAREVFMTTPQRSVVSWNAMITGFSLNGHGV 333
Query: 234 DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293
+ + LF+ M GV+PN +TF VL C H G VD GR+ F+ + E+ +EP I+HYGCM
Sbjct: 334 EGIDLFQKMMRHGVEPNAVTFLAVLGCCAHAGAVDIGREIFQSMVSEHGIEPAIEHYGCM 393
Query: 294 VDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353
VDLFG+ G LEEA+ +I+ M ++PN IWG+ L+AC+ H AE +K+ + + +P N
Sbjct: 394 VDLFGRCGLLEEAHALIQGMPMKPNAAIWGALLSACRAHAGLGTAEVALKELINL-EPWN 452
Query: 354 DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G + L+ +LY E+WE A VR+LM +V KA G SV+
Sbjct: 453 SGN-YVLLANLYAETERWEEAGEVRRLMRRMSVNKAPGQSVM 493
>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 695
Score = 257 bits (656), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 142/395 (35%), Positives = 219/395 (55%), Gaps = 35/395 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF ++ + D +++ +L +C NL + L+ E
Sbjct: 207 VKLFRKILELRIEFDDVTMISVLMACGRLANLEI--------------------GELIGE 246
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
Y+V+ G RN ++I Y+K G V AR F+ M R+V +WSAMI+
Sbjct: 247 YIVSK-GL---------RRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMIS 296
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y A L LF EM + P+++T+ +VL C+ LG+ GK H +I K +
Sbjct: 297 GYAQADRCKEALNLFHEM-QKGNVYPNEVTMVSVLYSCAMLGAYE--TGKWVHFYIKKKK 353
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+L + T L+D YAKCG++ ++ VF+ M +NV +WTALI G A+ G + AL F
Sbjct: 354 MKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFS 413
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M VKPN++TF GVL+AC H LVD+GR F + ++D+EPRI+HYGCMVD+ G+A
Sbjct: 414 SMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRA 473
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
GFLEEAY+ I M PN ++W + LA+C+ HK +MAE+ ++ R+ +P + G + L
Sbjct: 474 GFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRL-EPAHSGD-YIL 531
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ + Y + + E A RVR L+ + ++K G S+I
Sbjct: 532 LSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLI 566
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 103/354 (29%), Positives = 177/354 (50%), Gaps = 40/354 (11%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF +MH +SV D F+ +LK+C+ L +H+ ILK GF S+ +V
Sbjct: 108 LFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVE-------- 159
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
NT+I+ Y+ G + AR F+ MP R++ +W++M++ Y
Sbjct: 160 ----------------------NTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGY 197
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGS--VGLLMGKSAHGFIVKNE 180
G +D +KLFR+++ + D +T+ +VL C L + +G L+G+ +IV
Sbjct: 198 TKNGLWDEVVKLFRKILELR-IEFDDVTMISVLMACGRLANLEIGELIGE----YIVSKG 252
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
N + T L+DMYAKCG + A +F+ M++R+V++W+A+I G A ++AL+LF
Sbjct: 253 LRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFH 312
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
MQ V PNE+T VL +C G + G K+ ++ ++ + ++D + K
Sbjct: 313 EMQKGNVYPNEVTMVSVLYSCAMLGAYETG-KWVHFYIKKKKMKLTVTLGTQLIDFYAKC 371
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-VKPEN 353
G+++ + EV + M + NV W + + + + MA L VKP +
Sbjct: 372 GYIDRSVEVFKEMSFK-NVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPND 424
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/356 (21%), Positives = 160/356 (44%), Gaps = 61/356 (17%)
Query: 22 ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV---TSFGFARKLFDELPE 78
IL+ C +L +H+H+LK + + ++L + + +A +F+ + +
Sbjct: 27 ILQQCKTPKDL---QQVHAHLLKTRRLLDPIITEAVLESAALLLPDTIDYALSIFNHIDK 83
Query: 79 RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM 138
+ +N MI+G + F+R P D L LF++M
Sbjct: 84 PESSAYNVMIRGLA-----------FKRSP--------------------DNALLLFKKM 112
Query: 139 ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198
+ + D+ T +VL CS + + L G+ H I+K+ ++ NE + L+ MYA C
Sbjct: 113 -HEKSVQHDKFTFSSVLKACSRMKA--LREGEQVHALILKSGFKSNEFVENTLIQMYANC 169
Query: 199 GFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL 258
G + A VF+ M ER++++W +++ G G ++ + LF + ++ +++T VL
Sbjct: 170 GQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVL 229
Query: 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC----MVDLFGKAGFLEEAYEVIRTMR 314
AC ++ G + EY + ++ ++D++ K G ++ A ++ M
Sbjct: 230 MACGRLANLEIGE-----LIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMD 284
Query: 315 LEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF----TLICDLYT 366
+ +V+ W + ++ + A+R K+AL + G V+ T++ LY+
Sbjct: 285 -KRDVVAWSAMISG------YAQADRC-KEALNLFHEMQKGNVYPNEVTMVSVLYS 332
>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Glycine max]
Length = 617
Score = 257 bits (656), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 138/403 (34%), Positives = 235/403 (58%), Gaps = 13/403 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLG-FISHVYVATSLLH 59
+ +S M ++ V SF+ + +C + + LH+ L LG F S +YV +++
Sbjct: 94 LSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQLHAQTLLLGGFSSDLYVNNAVID 153
Query: 60 EYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
YV S AR +FDE+PER+ ++W +I Y++ G++ ARD F+ +P++++ +W+AM
Sbjct: 154 MYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAM 213
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVG----LLMGKSAHG 174
+ Y L++FR + +EG+ D++T+ V+S C+ LG+ + + G
Sbjct: 214 VTGYAQNAMPMDALEVFRRL-RDEGVEIDEVTLVGVISACAQLGASKYANWIRDIAESSG 272
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
F V + N + + L+DMY+KCG ++ A VF+ M ERNV S++++I G A G +
Sbjct: 273 FGVGD----NVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIHGRARA 328
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
A+ LF M TGVKPN +TF GVLTAC H GLVD+G++ F +++ Y + P + Y CM
Sbjct: 329 AIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPTAELYACMT 388
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
DL +AG+LE+A +++ TM +E + +WG+ L A H D+AE + + L ++P+N
Sbjct: 389 DLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVAE-IASKRLFELEPDNI 447
Query: 355 GGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
G + L+ + Y +W+ +VRKL+ +N++K G S + +
Sbjct: 448 GN-YLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWSWVEA 489
Score = 45.1 bits (105), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 51/126 (40%), Gaps = 1/126 (0%)
Query: 203 YALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACV 262
Y ++F + N +WTALI A RG ALS + M+ V P TF+ + +AC
Sbjct: 61 YPRLLFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACA 120
Query: 263 HTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
G + + ++D++ K G L A V M E +VI W
Sbjct: 121 AVRHSALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMP-ERDVISW 179
Query: 323 GSFLAA 328
+ A
Sbjct: 180 TGLIVA 185
>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 705
Score = 257 bits (656), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 139/403 (34%), Positives = 228/403 (56%), Gaps = 13/403 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLG-FISHVYVATSLLH 59
+++F M V D ++ ++ +C ++ + +H+ ++K + + + + +L+
Sbjct: 237 LEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVD 296
Query: 60 EYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y AR +FD +P RN V+ +M+ GY+++ +V AR F M +NV SW+A+
Sbjct: 297 MYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNAL 356
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH----- 173
IA Y G + ++LF ++ E + P T G +L+ C++L L +G+ AH
Sbjct: 357 IAGYTQNGENEEAVRLFL-LLKRESIWPTHYTFGNLLNACANLAD--LKLGRQAHTQILK 413
Query: 174 -GFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
GF ++ E + + L+DMY KCG ++ +VFE M ER+V+SW A+I G A GY
Sbjct: 414 HGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMIVGYAQNGYG 473
Query: 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC 292
+AL +F M +G KP+ +T GVL+AC H GLV+EGR+YF + E L P H+ C
Sbjct: 474 TNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTC 533
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE 352
MVDL G+AG L+EA ++I+TM ++P+ ++WGS LAACK H ++ + + + L + P
Sbjct: 534 MVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAACKVHGNIELG-KYVAEKLMEIDPL 592
Query: 353 NDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
N G + L+ ++Y +W+ RVRK M + V K G S I
Sbjct: 593 N-SGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVIKQPGCSWI 634
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 93/307 (30%), Positives = 155/307 (50%), Gaps = 5/307 (1%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS-FGFARKLF 73
DS +L SC + +H+ I+K F S +++ L+ Y F ARK+F
Sbjct: 18 DSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVF 77
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
D +P+RN ++N ++ +K G + EA + F+ MP + SW+AM++ + ++ L+
Sbjct: 78 DRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALR 137
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
F +M S E ++ + G+ LS C+ G L MG H I K+ + L+ + + LVD
Sbjct: 138 FFVDMHS-EDFVLNEYSFGSALSACA--GLTDLNMGIQIHALISKSRYLLDVYMGSALVD 194
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
MY+KCG + A F+ M RN++SW +LI G + AL +F MM GV+P+E+T
Sbjct: 195 MYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEIT 254
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
V++AC + EG + + + + +VD++ K + EA V M
Sbjct: 255 LASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRM 314
Query: 314 RLEPNVI 320
L NV+
Sbjct: 315 PLR-NVV 320
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/364 (24%), Positives = 158/364 (43%), Gaps = 73/364 (20%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++ F MH + + +S L +C +L + +H+ I K ++ VY+ ++L+
Sbjct: 136 LRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDM 195
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A++ FD + RN V+WN++I Y ++G +A
Sbjct: 196 YSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKA------------------- 236
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
L++F M+ N G+ PD++T+ +V+S C+ ++ G H +VK
Sbjct: 237 ------------LEVFVMMMDN-GVEPDEITLASVVSACASWSAI--REGLQIHARVVKR 281
Query: 180 EWELNEQI-ATILVDMYAKCGFLKYALMVFELME-------------------------- 212
+ N+ + LVDMYAKC + A +VF+ M
Sbjct: 282 DKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLM 341
Query: 213 -----ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
E+NV+SW ALI G G +E+A+ LF +++ + P TF +L AC + +
Sbjct: 342 FSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADL 401
Query: 268 DEGRKYFKMIDE-----EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
GR+ I + + E I ++D++ K G +E+ V M +E +V+ W
Sbjct: 402 KLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERM-VERDVVSW 460
Query: 323 GSFL 326
+ +
Sbjct: 461 NAMI 464
>gi|297599623|ref|NP_001047477.2| Os02g0625100 [Oryza sativa Japonica Group]
gi|125582938|gb|EAZ23869.1| hypothetical protein OsJ_07586 [Oryza sativa Japonica Group]
gi|255671102|dbj|BAF09391.2| Os02g0625100 [Oryza sativa Japonica Group]
Length = 493
Score = 257 bits (656), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 124/335 (37%), Positives = 209/335 (62%), Gaps = 12/335 (3%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR FD +PE+N V+WNTM+ Y+++G + +AR F+RMP RN A+W +MI L +
Sbjct: 158 ARWFFDAMPEKNVVSWNTMLGAYARAGMLPKARKLFDRMPSRNAATWGSMITGLLQSDHC 217
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ-- 186
+ L++F +M+++ G+ P++ + + +S C+ L + G HG+ E ELN
Sbjct: 218 EEALRVFSDMVAS-GVVPNEPALVSTVSACTQLR--WMEHGTWVHGYA---ERELNGAMS 271
Query: 187 --IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQA 244
+AT +VDMY KCG ++ A+ VF M RN+ SW ++I G A G ALSLF MQ
Sbjct: 272 AVLATAIVDMYGKCGSIRDAVRVFAAMPVRNIYSWNSMIAGLAMNGSERQALSLFWKMQL 331
Query: 245 TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLE 304
GV+PN++TF G+L+AC H+GLVDEGR F + + ++P +HYG MVDL G++G +
Sbjct: 332 AGVRPNDITFIGLLSACSHSGLVDEGRWLFYKMVNHFGIQPVPEHYGLMVDLLGRSGHVR 391
Query: 305 EAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDL 364
EA + +++M +EP+ +WG+ ACK H + ++ E V K+ + + +P++ G + L+ ++
Sbjct: 392 EAVDFVKSMPVEPHPGLWGALAGACKIHGEVELGEEVAKKLIEL-EPQH-GSRYILLSNI 449
Query: 365 YTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLS 399
Y + +W+ VR+++ ++ V K G++++ + S
Sbjct: 450 YATSNRWDDMANVRRILKDRKVPKGTGNAIVGNDS 484
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 92/249 (36%), Gaps = 63/249 (25%)
Query: 141 NEGLTPDQMTIGAVLSGCSHLG---------SVGLLMGKSAHGFIVKNEW---------- 181
N L PD +++ L CS L S+ + +G + ++V
Sbjct: 64 NHRLLPDHLSLSFSLHPCSRLPSHPVASVVHSLAVRLGHARDVYVVNAAASAYFAAADVA 123
Query: 182 -------ELNEQIA-----TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR 229
E + +A T +V +A G ++ A F+ M E+NV+SW ++ A
Sbjct: 124 SAERLFSEASRDVADVVTWTTMVTGHANAGDVERARWFFDAMPEKNVVSWNTMLGAYARA 183
Query: 230 G-------------------------------YSEDALSLFEMMQATGVKPNEMTFTGVL 258
G + E+AL +F M A+GV PNE +
Sbjct: 184 GMLPKARKLFDRMPSRNAATWGSMITGLLQSDHCEEALRVFSDMVASGVVPNEPALVSTV 243
Query: 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPN 318
+AC ++ G + E + +VD++GK G + +A V M + N
Sbjct: 244 SACTQLRWMEHGTWVHGYAERELNGAMSAVLATAIVDMYGKCGSIRDAVRVFAAMPVR-N 302
Query: 319 VIIWGSFLA 327
+ W S +A
Sbjct: 303 IYSWNSMIA 311
>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
Length = 677
Score = 256 bits (655), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 139/429 (32%), Positives = 232/429 (54%), Gaps = 44/429 (10%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+F M Q D+++ +LK+C+ NL V +H ++KLG ++Y+ L+ Y
Sbjct: 124 VFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYG 183
Query: 63 VTSF-GFARKLFDELPERNAVTWNTMIKGYSKSG-------------------------- 95
+ AR++ DE+P R+ V+WN+M+ GY+++G
Sbjct: 184 KCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGS 243
Query: 96 -----------NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
NV +D F ++ +++ SW+ MIA Y+N + + L+ +M G+
Sbjct: 244 LLPAVTNTSCDNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQM-QVHGV 302
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
PD ++I +VL C L + ++G+ H ++ + + N + L+DMYAKCG LK A
Sbjct: 303 EPDAVSISSVLPACGDLSAA--VLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEA 360
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
VF+ M R+V+SWT++I G +DA++LF+ M+ +G P+ + F VL AC H
Sbjct: 361 RAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHA 420
Query: 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324
GLVDEGR F ++ EY + P I+HY CMVDL G+AG ++EAY + R M +EPN +WGS
Sbjct: 421 GLVDEGRYCFNLM-AEYGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGS 479
Query: 325 FLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384
L+AC+ + ++A + L + PE G + L+ ++Y +W+ E VR +M ++
Sbjct: 480 LLSACRVYSSMNIA-LLAADHLFQLAPEQ-SGYYVLLSNIYAKAGRWQDVETVRSIMNSK 537
Query: 385 NVRKARGSS 393
++K G+S
Sbjct: 538 GIKKIPGNS 546
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 131/276 (47%), Gaps = 9/276 (3%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
++ L D+ N +++ Y+ G C R F+ + +NV ++ MI +Y+N G Y
Sbjct: 59 SKILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLY 118
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L +F+ M +N+G PD T VL CS G+ L +G HG +VK ++N I
Sbjct: 119 QDALLVFKTM-ANQGFYPDNYTYPCVLKACSVSGN--LWVGLQIHGAVVKLGLDMNLYIG 175
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
LV MY KC +L A V + M R+++SW +++ G A G DAL L M+ +K
Sbjct: 176 NGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLK 235
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+ T +L A +T + Y K + + E + + M+ ++ EA +
Sbjct: 236 PDAGTMGSLLPAVTNTSC--DNVLYVKDMFVKLK-EKSLISWNVMIAVYVNNAMPNEAVD 292
Query: 309 VIRTMR---LEPNVIIWGSFLAACKEHKQFDMAERV 341
+ M+ +EP+ + S L AC + + R+
Sbjct: 293 LYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRI 328
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 115/262 (43%), Gaps = 40/262 (15%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+ QM V D+ SI +L +C + V +HE
Sbjct: 291 VDLYLQMQVHGVEPDAVSISSVLPACGDLS--------------------AAVLGRRIHE 330
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
YV RK N + N +I Y+K G + EAR F++M R+V SW++MI+
Sbjct: 331 YV------ERKKL----RPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMIS 380
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
AY +G + LF++M + G TPD + +VL+ CSH G L+ + + F + E
Sbjct: 381 AYGMSGQGKDAVALFKKM-RDSGFTPDWIAFVSVLAACSHAG----LVDEGRYCFNLMAE 435
Query: 181 WELNEQIA--TILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSEDALS 237
+ + I +VD+ + G + A + M E N W +L+ SA R YS ++
Sbjct: 436 YGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLL--SACRVYSSMNIA 493
Query: 238 LFEMMQATGVKPNEMTFTGVLT 259
L + P + + +L+
Sbjct: 494 LLAADHLFQLAPEQSGYYVLLS 515
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 86/175 (49%), Gaps = 3/175 (1%)
Query: 184 NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQ 243
N + L+ YA CG Y +F+ + ++NV+ + +I + G +DAL +F+ M
Sbjct: 70 NPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMA 129
Query: 244 ATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFL 303
G P+ T+ VL AC +G + G + + + L+ + +V ++GK +L
Sbjct: 130 NQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAV-VKLGLDMNLYIGNGLVSMYGKCKWL 188
Query: 304 EEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+ A V+ M +++ W S +A ++ +F+ A ++ ++ + +K + D G
Sbjct: 189 DAARRVLDEMPGR-DMVSWNSMVAGYAQNGRFNDALKLCRE-MEDLKLKPDAGTM 241
>gi|357142899|ref|XP_003572730.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Brachypodium distachyon]
Length = 497
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 140/420 (33%), Positives = 226/420 (53%), Gaps = 40/420 (9%)
Query: 13 PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY----------- 61
P D SI L SCT + LHS ++LG VY+ + + Y
Sbjct: 73 PPDHLSISFSLHSCTRLPCHPIASLLHSFAVRLGHAGDVYIVNAAVSAYFTAADVASAER 132
Query: 62 -----------VVT------------SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVC 98
VVT AR FD +PERN V+WN M+ Y+ +G +
Sbjct: 133 LFSDTSKDVADVVTWTTMVAGHARAGDVERARWFFDAMPERNVVSWNAMLGAYASAGMLS 192
Query: 99 EARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGC 158
EAR F+ M RN A+WS+M+ + + + L++F +M++ G+ P++ + +V+S C
Sbjct: 193 EARKLFDGMHSRNAATWSSMVTGLVQSDHCEEALRVFSDMVA-RGVVPNESILVSVISAC 251
Query: 159 SHLGSVGLLMGKSAHGFIVKN-EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVI 217
+ L S L G H ++ + ++ +AT +VDMY KCG + A+ VF M RN+
Sbjct: 252 AQLRS--LEHGVWVHAYVKRELHGSMSVILATAIVDMYGKCGCIHNAIRVFAAMPVRNIY 309
Query: 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI 277
SW ++I G A G ALSLF MQ GV+PN++TF G+L AC H+GLVDEGR F +
Sbjct: 310 SWNSMITGLAMNGREMQALSLFWKMQMAGVQPNDITFIGLLGACSHSGLVDEGRWLFNRM 369
Query: 278 DEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDM 337
++ ++P +HYG MVDL G+AG ++EA + ++ M +EP+ +WG+ AC H + ++
Sbjct: 370 VNDFGIQPVPEHYGLMVDLLGRAGLVKEAVDFVKNMPVEPHPGLWGALAGACNIHGEVEL 429
Query: 338 AERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
E + K+ + + +P + G + L+ ++Y + +WE VR+L+ + V K G++V+ +
Sbjct: 430 GEEIAKKLIEL-EPRH-GSRYILLSNIYGTSSRWEDMATVRRLIKERKVSKGTGNAVVGN 487
>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 595
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 132/385 (34%), Positives = 228/385 (59%), Gaps = 36/385 (9%)
Query: 12 VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARK 71
V D+ + ++K+ T ++ + +HS +++ GF S +YV SLLH Y
Sbjct: 117 VEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLY---------- 166
Query: 72 LFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPG 131
+ G+V A F++MP +++ +W+++I + G +
Sbjct: 167 --------------------ANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEA 206
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
L L+ EM +++G+ PD TI ++LS C+ +G+ L +GK H +++K N + +L
Sbjct: 207 LALYTEM-NSKGIKPDGFTIVSLLSACAKIGA--LTLGKRVHVYMIKVGLTRNLHSSNVL 263
Query: 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT-GVKPN 250
+D+YA+CG ++ A +F+ M ++N +SWT+LI G A G+ ++A+ LF+ M++T G+ P
Sbjct: 264 LDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPC 323
Query: 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI 310
E+TF G+L AC H G+V EG +YF+ + EEY +EPRI+H+GCMVDL +AG +++AYE I
Sbjct: 324 EITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYI 383
Query: 311 RTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEK 370
++M ++PNV+IW + L AC H D+AE Q L++ +P N G + L+ ++Y ++
Sbjct: 384 KSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQL-EP-NHSGDYVLLSNMYASEQR 441
Query: 371 WEGAERVRKLMLNQNVRKARGSSVI 395
W +++RK ML V+K G S++
Sbjct: 442 WSDVQKIRKQMLRDGVKKVPGHSLV 466
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 111/219 (50%), Gaps = 6/219 (2%)
Query: 111 NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGK 170
NV W+ +I Y G L+REM + + PD T ++ + + V L G+
Sbjct: 84 NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRL--GE 141
Query: 171 SAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRG 230
+ H ++++ + + L+ +YA CG + A VF+ M E+++++W ++I G A G
Sbjct: 142 TIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENG 201
Query: 231 YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQH 289
E+AL+L+ M + G+KP+ T +L+AC G + G++ + MI + L +
Sbjct: 202 KPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMI--KVGLTRNLHS 259
Query: 290 YGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
++DL+ + G +EEA + M ++ N + W S +
Sbjct: 260 SNVLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLIVG 297
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 117/257 (45%), Gaps = 46/257 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+++M+ + + D F+I+ +L +C LT+ +H +++K+G
Sbjct: 207 LALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLT------------ 254
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
RN + N ++ Y++ G V EA+ F+ M +N SW+++I
Sbjct: 255 ------------------RNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIV 296
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF----I 176
G ++LF+ M S EGL P ++T +L CSH G V GF
Sbjct: 297 GLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMV-------KEGFEYFRR 349
Query: 177 VKNEWELNEQIATI--LVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSE 233
++ E+++ +I +VD+ A+ G +K A + M + NV+ W L+ G S+
Sbjct: 350 MREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSD 409
Query: 234 DALSLFEMMQATGVKPN 250
L+ F +Q ++PN
Sbjct: 410 --LAEFARIQILQLEPN 424
>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
Length = 621
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 145/397 (36%), Positives = 226/397 (56%), Gaps = 21/397 (5%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+ QM S+ DS+++ +LK+C L +HS +LKLG S+ + L+
Sbjct: 115 IHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIEL 174
Query: 61 Y-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y +F AR++FDE+PER+ V MI Y G +++ W+AMI
Sbjct: 175 YGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHG-------------IKDTVCWTAMI 221
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ G + L++FR M E + P+++TI VLS CS LG+ L +G+ ++ K+
Sbjct: 222 DGLVRNGESNRALEVFRNM-QREDVMPNEVTIVCVLSACSELGA--LQLGRWVRSYMDKH 278
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
ELN + L++MY++CG + A VFE M+E+NVI++ ++I G A G S +A+ LF
Sbjct: 279 RIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELF 338
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+ G P+ +TF GVL AC H GL + G + F + ++Y +EP+I+HYGCMVDL G+
Sbjct: 339 RGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGR 398
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN-DGGVF 358
G LEEAY IR M++ P+ ++ G+ L+ACK H ++AERV K +V +N D G +
Sbjct: 399 LGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHGNLELAERVAKS---LVACKNADSGTY 455
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ + Y+ + KW+ A VR M + + K G S I
Sbjct: 456 ILLSNAYSSSGKWKEAAEVRTNMREEGIEKEPGCSSI 492
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 12/164 (7%)
Query: 153 AVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME 212
++L C H + + K I++N + + L+ + + + YA +F +
Sbjct: 37 SLLQNCKHNNQIPPIYAK-----IIRNHHHQDPFVVFELLRVCSNLNSIGYASKIFSHTQ 91
Query: 213 ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK 272
NV +TALI G Y D + L+ M + + P+ T VL AC + EGR+
Sbjct: 92 NPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGRE 151
Query: 273 YFKMIDE---EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
+ + + RI+ +++L+GK G E+A V M
Sbjct: 152 VHSQVLKLGLSSNRSIRIK----LIELYGKCGAFEDARRVFDEM 191
>gi|357153087|ref|XP_003576334.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Brachypodium distachyon]
Length = 531
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 145/432 (33%), Positives = 226/432 (52%), Gaps = 52/432 (12%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIH------------HLHSHILKLGFI 48
+ +F+++ R S+P+ + +LKSC L LH +LKLG
Sbjct: 98 LAVFNRVSRLSLPTPLPAFPALLKSCARAFGLCAAADGGGEGFVSKGMELHGRVLKLGCG 157
Query: 49 SHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVC--------- 98
YV +L+ Y + G ARK+FD +P RNAV+WN ++ + +G++
Sbjct: 158 GDRYVQNALVSMYGKLGRLGDARKVFDGMPARNAVSWNALVAAHGATGDLHGVELLSREM 217
Query: 99 ----------------------EARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFR 136
A F MP R+ SW+++I Y G Y L++FR
Sbjct: 218 PERSVSWWNAEITRHARVGDMEAAARVFREMPGRDAVSWNSLIGGYTKLGRYVQALEVFR 277
Query: 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA 196
EM + G+ P ++T+ +VL C+ +G L +GK HG+I + + LVDMYA
Sbjct: 278 EM-QDSGVEPTELTLVSVLGACAEIGE--LELGKGVHGYIGSKGVVADGYVGNALVDMYA 334
Query: 197 KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTG 256
KCG L+ A +FE M R++ W A+I G + GYS AL LF+ M+ V+P+ +TF G
Sbjct: 335 KCGSLELARQLFESMSTRDITCWNAMIVGFSVHGYSRKALELFDAMR---VEPDHVTFLG 391
Query: 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE 316
VL AC H GLVDEGR YF+ + E+Y + P ++HYGCMVD+ + G + EAY++I M ++
Sbjct: 392 VLIACSHGGLVDEGRVYFRSMTEDYKIVPGVKHYGCMVDMLCRCGKVAEAYQMINHMPVK 451
Query: 317 PNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAER 376
N ++W LAAC+ H D+A + + L + P +DG V T + ++Y ++W+ E
Sbjct: 452 ANCVLWKMVLAACRVHGHIDLANKAFHE-LHQLMPIDDGDVIT-VSNVYAEAKRWDVVEH 509
Query: 377 VRKLMLNQNVRK 388
+R ++ V K
Sbjct: 510 LRTKVIEPGVWK 521
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 72/319 (22%), Positives = 122/319 (38%), Gaps = 53/319 (16%)
Query: 36 HHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSG 95
H LH+ + K G + H F R L LP +A T ++ +
Sbjct: 32 HQLHAVLFKHGLLHHP---------------AFLRALLSRLPPSSASTLALLLSAAPSAL 76
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155
+ PL +S I+A ++ L +F +S L A+L
Sbjct: 77 SP----------PL-----YSPAISALASSPCPAASLAVFNR-VSRLSLPTPLPAFPALL 120
Query: 156 SGCSHL---------GSVGLL-MGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYAL 205
C+ G G + G HG ++K + + LV MY K G L A
Sbjct: 121 KSCARAFGLCAAADGGGEGFVSKGMELHGRVLKLGCGGDRYVQNALVSMYGKLGRLGDAR 180
Query: 206 MVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG 265
VF+ M RN +SW AL+ +AH G + D L E++ + + + +T G
Sbjct: 181 KVFDGMPARNAVSWNALV--AAH-GATGD-LHGVELLSREMPERSVSWWNAEITRHARVG 236
Query: 266 LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR---LEPNVIIW 322
++ + F+ + + + ++ + K G +A EV R M+ +EP +
Sbjct: 237 DMEAAARVFREMPGRDAVS-----WNSLIGGYTKLGRYVQALEVFREMQDSGVEPTELTL 291
Query: 323 GSFLAACKEHKQFDMAERV 341
S L AC E + ++ + V
Sbjct: 292 VSVLGACAEIGELELGKGV 310
>gi|115448475|ref|NP_001048017.1| Os02g0730900 [Oryza sativa Japonica Group]
gi|46390470|dbj|BAD15931.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|46390866|dbj|BAD16370.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113537548|dbj|BAF09931.1| Os02g0730900 [Oryza sativa Japonica Group]
gi|125541007|gb|EAY87402.1| hypothetical protein OsI_08809 [Oryza sativa Indica Group]
gi|125583571|gb|EAZ24502.1| hypothetical protein OsJ_08263 [Oryza sativa Japonica Group]
Length = 488
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 212/363 (58%), Gaps = 9/363 (2%)
Query: 37 HLHSHILKLG---FISHVYVATSLLHEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYS 92
+H+ ++K G +S VY +TSL+ Y + G ARK+FD +P + V+WN ++ G
Sbjct: 83 QIHALLVKSGDPPSVSGVYASTSLVRVYARLGRLGDARKMFDGMPVKTVVSWNVLLDGIV 142
Query: 93 KSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIG 152
++ ++ A + F MP RNV SW+ +IA ++ G + LF EM GL PD+ T+
Sbjct: 143 RASDLDAAWEVFVEMPERNVVSWNTVIAGFVRHGWVQEAVDLFAEMTVVYGLAPDEATMV 202
Query: 153 AVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME 212
+S +G +G+ G+ AHG++++ E+ L+ + L++MY +CG + A F +
Sbjct: 203 GFVSAVRDMGVLGI--GRCAHGYVIRREFSLDGALGVALINMYTRCGSMGDAFRCFSSVA 260
Query: 213 ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK 272
+NV WT++I G A G+ E AL LF M+ G++PN +TF VL AC H GLV+EG K
Sbjct: 261 SKNVEQWTSVIGGFAAHGHPEMALRLFTEMRQLGIEPNGVTFLAVLNACSHGGLVNEGFK 320
Query: 273 YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
YF ++ ++ +QHYGC++DL G+AGFLEEA+E+ ++ +P ++IW S LAAC+ H
Sbjct: 321 YFNLM-RSMGIKSTMQHYGCLIDLLGRAGFLEEAFELASSLPEDPGLVIWSSLLAACQSH 379
Query: 333 KQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGS 392
+MAE V + L +P + G + L+ + Y +WE +R R+ M V K G
Sbjct: 380 GNVEMAE-VAARKLAHAEPRH-GSSYVLLSNTYARAGQWEDLKRTRRKMEEYGVMKQPGL 437
Query: 393 SVI 395
S I
Sbjct: 438 SWI 440
>gi|242059659|ref|XP_002458975.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
gi|241930950|gb|EES04095.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
Length = 590
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 200/327 (61%), Gaps = 5/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR+LFD++ ER+ V WN+MI GY++ G + EAR FE MP RNV SWS +I ++ G
Sbjct: 233 ARELFDQMTERDLVCWNSMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVRCGEA 292
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L+ F+ M+ G+ PD++ +S C+ LG+ L G+ H ++ K + + +
Sbjct: 293 KEALEHFQSMLRC-GIRPDRVAAVGAVSACAQLGA--LEQGRWLHSYLEKKKVLSDVVVQ 349
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
T L+DMY KCG + A+++FE M ER+V++W +I G GY DA+ LF M+A V
Sbjct: 350 TALIDMYMKCGRMDLAMLIFESMPERSVVTWNVMIVGLGTHGYGLDAVMLFHRMEAERVA 409
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
++++ +LTAC H GLV EG + F + +++ ++P+++HYG +VDL G+AG L++A
Sbjct: 410 VDDLSLLAMLTACTHAGLVSEGLEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQARH 469
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
I TM +EP +WGS LAAC+ H ++AE +++ + +D GV+ L+ ++Y
Sbjct: 470 AIETMPMEPTPELWGSLLAACRSHSCVELAELSVERLANL--GADDSGVYVLLSNIYADE 527
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
W R+RKLM ++ +RK G SVI
Sbjct: 528 GMWGDVLRIRKLMSDEGMRKDIGRSVI 554
>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Glycine max]
Length = 611
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 222/390 (56%), Gaps = 19/390 (4%)
Query: 15 DSFSILHILKSCTHFNNLTVIH-----HLHSHILKLGFISHVYVATSLLHEYVVTSFG-- 67
D F ++K+C NL V+H +H+ F V +SL+ Y FG
Sbjct: 103 DHFVFASLVKACA---NLGVLHVKQGKQVHARFFLSPFSDDDVVKSSLIDMY--AKFGLP 157
Query: 68 -FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAG 126
+ R +FD + N+++W TMI GY++SG EA F + P RN+ +W+A+I+ + +G
Sbjct: 158 DYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSG 217
Query: 127 AYDPGLKLFREMISNEGLT-PDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
LF EM +EG++ D + + +V+ C++L L GK HG ++ +E
Sbjct: 218 NGVDAFHLFVEM-RHEGISVTDPLVLSSVVGACANLALWEL--GKQMHGVVITLGYESCL 274
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
I+ L+DMYAKC L A +F M ++V+SWT++I G+A G +E+AL+L++ M
Sbjct: 275 FISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEALALYDEMVLA 334
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305
GVKPNE+TF G++ AC H GLV +GR F+ + E++ + P +QHY C++DLF ++G L+E
Sbjct: 335 GVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHYTCLLDLFSRSGHLDE 394
Query: 306 AYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365
A +IRTM + P+ W + L++CK H MA R+ L + KPE D + L+ ++Y
Sbjct: 395 AENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAVRIADHLLNL-KPE-DPSSYILLSNIY 452
Query: 366 TMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
WE +VRKLM+ +KA G S I
Sbjct: 453 AGAGMWEDVSKVRKLMMTLEAKKAPGYSCI 482
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 127/300 (42%), Gaps = 36/300 (12%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
NT++ Y K G + +A F+ +P R+ +W++++ A + L + R ++S G
Sbjct: 42 NTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACNLSNRPHRALSISRSLLST-GF 100
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
PD +++ C++LG + + GK H + + ++ + + L+DMYAK G Y
Sbjct: 101 HPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYG 160
Query: 205 LMVFELMEERNVISWT-------------------------------ALICGSAHRGYSE 233
VF+ + N ISWT ALI G G
Sbjct: 161 RAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGV 220
Query: 234 DALSLFEMMQATGVK-PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC 292
DA LF M+ G+ + + + V+ AC + L + G++ ++ E +
Sbjct: 221 DAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQMHGVV-ITLGYESCLFISNA 279
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ-ALRMVKP 351
++D++ K L A + M +V+ W S + +H Q + A + + L VKP
Sbjct: 280 LIDMYAKCSDLVAAKYIFCEM-CRKDVVSWTSIIVGTAQHGQAEEALALYDEMVLAGVKP 338
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 85/182 (46%), Gaps = 8/182 (4%)
Query: 167 LMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGS 226
L+ K H I+K +E I L++ Y KCG ++ AL +F+ + R+ ++W +L+
Sbjct: 20 LLAKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTAC 79
Query: 227 AHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR 286
ALS+ + +TG P+ F ++ AC + G++ K K + + L P
Sbjct: 80 NLSNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHV--KQGKQVHARFFLSPF 137
Query: 287 IQH---YGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA-CKEHKQFDMAERVI 342
++D++ K G + V ++ N I W + ++ + ++F+ A R+
Sbjct: 138 SDDDVVKSSLIDMYAKFGLPDYGRAVFDSIS-SLNSISWTTMISGYARSGRKFE-AFRLF 195
Query: 343 KQ 344
+Q
Sbjct: 196 RQ 197
>gi|225465641|ref|XP_002270476.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Vitis vinifera]
Length = 539
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 143/401 (35%), Positives = 229/401 (57%), Gaps = 9/401 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F +M R V D + I K+ + L + +H I K G ++A SL+H
Sbjct: 97 VSVFVKMLRFGVCPDHLTYPFIAKAVARLSELRLALAVHCRIAKEGLWFDRFIANSLIHM 156
Query: 61 Y-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y G ARK+FDE+ RN+V+WN M+ GY+K G++ AR FE MP R+V SWS+MI
Sbjct: 157 YGSCGDIGSARKVFDEMLIRNSVSWNAMLDGYAKCGDLDSARQVFESMPDRDVVSWSSMI 216
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ G Y L +F M G +++T+ +VL C+HLG+ L G++ H ++V N
Sbjct: 217 DGCVKGGEYGVALAIFERM-RVVGPKANEVTMVSVLCACAHLGA--LEQGRTMHQYMVDN 273
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFE--LMEERNVISWTALICGSAHRGYSEDALS 237
+ T L+DMYAKCG ++ A+ VF M++ +V+ W +I G A G ++L
Sbjct: 274 TMRFTLVLRTSLMDMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLVHESLE 333
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LF+ MQ G+ P+E+T+ + +AC H GLV E +FK + ++ + P+ +HY CMVD+
Sbjct: 334 LFKEMQVLGIVPDEITYLCLFSACAHGGLVHEAWHFFKSLGKQ-GMVPKSEHYACMVDVL 392
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
+AG L EAY+ I M +EP + G+ L C H++FD+AERV ++ + + +P++DG
Sbjct: 393 SRAGQLAEAYDFIAQMPMEPTASMLGALLNGCMNHRRFDLAERVGRKLIEL-EPDHDGRY 451
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSL 398
L ++Y + W+ A +R+ M + V+K+ G S + L
Sbjct: 452 IGL-SNVYAGVKLWDNARMMREAMERRGVKKSPGFSFVEVL 491
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 160/332 (48%), Gaps = 29/332 (8%)
Query: 14 SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FAR 70
S + +++ +L++C +++ + + + G H A+ LL ++S+G +
Sbjct: 10 STNQTLIALLENC---RSMSEFKQIQAFFITSGLSQHHPFASRLLSFSAISSWGDIDHSY 66
Query: 71 KLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDP 130
++F ++P WN++I+G+SK N + F +M V A A
Sbjct: 67 RIFLQIPSPTISNWNSIIRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYPFIAKAVARLS 126
Query: 131 GLKLFREM---ISNEGLTPDQMTIGAVL---SGCSHLGSVGLLMGKSAHGFIVKNEWELN 184
L+L + I+ EGL D+ +++ C +GS + + +++N N
Sbjct: 127 ELRLALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGSARKVFDE----MLIRNSVSWN 182
Query: 185 EQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQA 244
++D YAKCG L A VFE M +R+V+SW+++I G G AL++FE M+
Sbjct: 183 A-----MLDGYAKCGDLDSARQVFESMPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRV 237
Query: 245 TGVKPNEMTFTGVLTACVHTGLVDEGRKYFK-MIDE--EYDLEPRIQHYGCMVDLFGKAG 301
G K NE+T VL AC H G +++GR + M+D + L R ++D++ K G
Sbjct: 238 VGPKANEVTMVSVLCACAHLGALEQGRTMHQYMVDNTMRFTLVLRTS----LMDMYAKCG 293
Query: 302 FLEEAYEVIRTMRL-EPNVIIWGSFLAACKEH 332
+EEA V R + + + +V++W + + H
Sbjct: 294 AIEEAIAVFRGVPMDQTDVLMWNTIIGGLATH 325
>gi|7362769|emb|CAB83139.1| putative protein [Arabidopsis thaliana]
Length = 558
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 142/385 (36%), Positives = 221/385 (57%), Gaps = 12/385 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ ++ +M V D + +L S + +L + H+ IL G +V TSLL+
Sbjct: 47 ISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNM 106
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A+++FD+ ++ WN+++ Y+K+G + +AR F+ MP RNV SWS +I
Sbjct: 107 YSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLI 166
Query: 120 AAYLNAGAYDPGLKLFREM---ISNEGLT-PDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
Y+ G Y L LFREM NE P++ T+ VLS C LG+ L GK H +
Sbjct: 167 NGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGA--LEQGKWVHAY 224
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFE-LMEERNVISWTALICGSAHRGYSED 234
I K E++ + T L+DMYAKCG L+ A VF L +++V +++A+IC A G +++
Sbjct: 225 IDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDE 284
Query: 235 ALSLF-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293
LF EM + + PN +TF G+L ACVH GL++EG+ YFKM+ EE+ + P IQHYGCM
Sbjct: 285 CFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCM 344
Query: 294 VDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353
VDL+G++G ++EA I +M +EP+V+IWGS L+ + E +K+ + + P N
Sbjct: 345 VDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIEL-DPMN 403
Query: 354 DGGVFTLICDLYTMNEKW-EGAERV 377
G + L+ ++Y +W EG +V
Sbjct: 404 SGA-YVLLSNVYAKTGRWMEGINKV 427
>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 133/396 (33%), Positives = 226/396 (57%), Gaps = 5/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF +M + V + +++ +L +C +L + S+I + ++ +A ++L
Sbjct: 219 LELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDM 278
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y S A++LFD + E++ VTW TM+ GY+ S + AR+ MP +++ +W+A+I
Sbjct: 279 YTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALI 338
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+AY G + L +F E+ + + +Q+T+ + LS C+ +G+ L +G+ H +I KN
Sbjct: 339 SAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGA--LELGRWIHSYIKKN 396
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
++N + + L+ MY+KCG L+ A VF +E+R+V W+A+I G A G +A+ +F
Sbjct: 397 GIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMF 456
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MQ VKPN +TFT V AC HTGLVDE F ++ Y + P +HY C+VD+ G+
Sbjct: 457 YKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYACIVDVLGR 516
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
+G+LE+A + I M + P+ +WG+ L ACK H +AE + L + +P NDG
Sbjct: 517 SGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLLEL-EPRNDGA-HV 574
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y + KW+ +RK M ++K G S I
Sbjct: 575 LLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSI 610
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 100/387 (25%), Positives = 176/387 (45%), Gaps = 50/387 (12%)
Query: 21 HILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDELP 77
H + ++L + H+H+++ G S Y A+ L ++SF +ARK+FDE+
Sbjct: 33 HTISLIDRCSSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEI- 91
Query: 78 ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKL--F 135
P N +W+ +I AY A DP + F
Sbjct: 92 ------------------------------PQPNSFTWNTLIRAY--ASGPDPVCSIWAF 119
Query: 136 REMISNEGLT-PDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDM 194
+M+S+E P++ T ++ + + S+ L G+S HG +K+ + +A L+
Sbjct: 120 LDMVSSESQCYPNKYTFPFLIKAAAEVSSLSL--GQSLHGMAIKSAVGSDVFVANSLIHC 177
Query: 195 YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTF 254
Y CG L A VF ++E++V+SW ++I G +G + AL LF+ M++ VK + +T
Sbjct: 178 YFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTM 237
Query: 255 TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR 314
GVL+AC ++ GR+ I EE + + M+D++ K G +E+A + M
Sbjct: 238 VGVLSACAKIRDLEFGRRVCSYI-EENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAME 296
Query: 315 LEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGA 374
+ NV W + L + ++ A V+ P+ D + + Y N K A
Sbjct: 297 EKDNV-TWTTMLDGYAISEDYEAAREVLN-----AMPKKDIVAWNALISAYEQNGKPNEA 350
Query: 375 ERV-RKLMLNQNVRKARGSSVISSLSV 400
V +L L +N+ K +++S+LS
Sbjct: 351 LLVFHELQLQKNI-KLNQITLVSTLSA 376
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 84/356 (23%), Positives = 154/356 (43%), Gaps = 70/356 (19%)
Query: 10 QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGF 68
Q P + ++ ++K+ ++L++ LH +K S V+VA SL+H Y
Sbjct: 128 QCYP-NKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDS 186
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A K+F + E++ V+WN+MI G+ + G+
Sbjct: 187 ACKVFTTIKEKDVVSWNSMINGF-------------------------------VQKGSP 215
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
D L+LF++M S E + +T+ VLS C+ + L G+ +I +N +N +A
Sbjct: 216 DKALELFKKMES-EDVKASHVTMVGVLSACAKIRD--LEFGRRVCSYIEENRVNVNLTLA 272
Query: 189 TILVDMYAKCGFLKYALMVFELMEE-------------------------------RNVI 217
++DMY KCG ++ A +F+ MEE ++++
Sbjct: 273 NAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIV 332
Query: 218 SWTALICGSAHRGYSEDALSLFEMMQ-ATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKM 276
+W ALI G +AL +F +Q +K N++T L+AC G ++ GR
Sbjct: 333 AWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSY 392
Query: 277 IDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
I + ++ ++ ++ K G LE+A EV ++ + +V +W + + H
Sbjct: 393 IKKN-GIKMNFYVTSALIHMYSKCGDLEKAREVFNSVE-KRDVFVWSAMIGGLAMH 446
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 133/396 (33%), Positives = 225/396 (56%), Gaps = 5/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF +M + V + +++ +L +C NL + S+I + ++ +A ++L
Sbjct: 217 LELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDM 276
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y S A++LFD + E++ VTW TM+ GY+ S + AR+ MP +++ +W+A+I
Sbjct: 277 YTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALI 336
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+AY G + L +F E+ + + +Q+T+ + LS C+ +G+ L +G+ H +I K+
Sbjct: 337 SAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGA--LELGRWIHSYIKKH 394
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+N + + L+ MY+KCG L+ + VF +E+R+V W+A+I G A G +A+ +F
Sbjct: 395 GIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMF 454
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MQ VKPN +TFT V AC HTGLVDE F ++ Y + P +HY C+VD+ G+
Sbjct: 455 YKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGR 514
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
+G+LE+A + I M + P+ +WG+ L ACK H ++AE + L + +P NDG
Sbjct: 515 SGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLEL-EPRNDGA-HV 572
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y KWE +RK M ++K G S I
Sbjct: 573 LLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSI 608
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 103/402 (25%), Positives = 181/402 (45%), Gaps = 52/402 (12%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV 63
FS ++ + ++ + +++ C L H H+++ G S Y A+ L +
Sbjct: 18 FSNPNQPTTNNERSRHISLIERCVSLRQLK---QTHGHMIRTGTFSDPYSASKLFAMAAL 74
Query: 64 TSFG---FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+SF +ARK+FDE+ P N +W+ +I
Sbjct: 75 SSFASLEYARKVFDEI-------------------------------PKPNSFAWNTLIR 103
Query: 121 AYLNAGAYDPGLKL--FREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
AY A DP L + F +M+S P++ T ++ + + S+ L G+S HG VK
Sbjct: 104 AY--ASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSL--GQSLHGMAVK 159
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ + +A L+ Y CG L A VF ++E++V+SW ++I G +G + AL L
Sbjct: 160 SAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALEL 219
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F+ M++ VK + +T GVL+AC ++ GR+ I EE + + M+D++
Sbjct: 220 FKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYI-EENRVNVNLTLANAMLDMYT 278
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
K G +E+A + M + NV W + L + ++ A V+ P+ D +
Sbjct: 279 KCGSIEDAKRLFDAMEEKDNV-TWTTMLDGYAISEDYEAAREVLNSM-----PQKDIVAW 332
Query: 359 TLICDLYTMNEKWEGAERV-RKLMLNQNVRKARGSSVISSLS 399
+ Y N K A V +L L +N+ K +++S+LS
Sbjct: 333 NALISAYEQNGKPNEALIVFHELQLQKNM-KLNQITLVSTLS 373
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/351 (23%), Positives = 154/351 (43%), Gaps = 69/351 (19%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLF 73
+ ++ ++K+ ++L++ LH +K S V+VA SL+H Y A K+F
Sbjct: 130 NKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVF 189
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
+ E++ V+WN+MI G+ + G+ D L+
Sbjct: 190 TTIKEKDVVSWNSMINGF-------------------------------VQKGSPDKALE 218
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
LF++M S E + +T+ VLS C+ + + L G+ +I +N +N +A ++D
Sbjct: 219 LFKKMES-EDVKASHVTMVGVLSACAKIRN--LEFGRQVCSYIEENRVNVNLTLANAMLD 275
Query: 194 MYAKCGFLKYALMVFELMEE-------------------------------RNVISWTAL 222
MY KCG ++ A +F+ MEE +++++W AL
Sbjct: 276 MYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNAL 335
Query: 223 ICGSAHRGYSEDALSLFEMMQ-ATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY 281
I G +AL +F +Q +K N++T L+AC G ++ GR I +++
Sbjct: 336 ISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYI-KKH 394
Query: 282 DLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
+ ++ ++ K G LE++ EV ++ + +V +W + + H
Sbjct: 395 GIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE-KRDVFVWSAMIGGLAMH 444
>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
Length = 513
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 145/462 (31%), Positives = 246/462 (53%), Gaps = 74/462 (16%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY- 61
++ ++ + D F+ +LKSC F + +H I+K+GF+ ++YV SL+H Y
Sbjct: 21 VYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVIIKMGFVCNIYVENSLVHFYS 80
Query: 62 VVTSFGFARK------------------------LFDELP--------ERNAVTW----- 84
V FG A + LFDE E NA T+
Sbjct: 81 VCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVGLFLRMDVEPNAATFVSVLV 140
Query: 85 ------------------------------NTMIKGYSKSGNVCEARDFFERMPLRNVAS 114
N ++ Y K G + A+ F+ + +++ S
Sbjct: 141 ACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYVKCGCLPGAKQVFDELAEKDIVS 200
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
W+++I+ + L+LF++M S+ G+ PD + + +VLS C+ LG+ L G+ H
Sbjct: 201 WTSIISGLVQCNCPKEALELFQDMQSS-GIEPDGIILTSVLSACARLGA--LDYGRWVHE 257
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
I + + + QI T +VDMYAKCG ++ ++ +F M +NV++W AL+ G A G++
Sbjct: 258 HIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVLTWNALLNGLAMHGHAYK 317
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK-MIDEEYDLEPRIQHYGCM 293
L LFE M G++PNE+TF +LTAC H GLV+EGR+YF M ++Y+L PR++HYGCM
Sbjct: 318 VLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEGRQYFNWMKGQQYNLPPRLEHYGCM 377
Query: 294 VDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353
VDL +A L+EA E+ + M + P+V I G+ L+ACKE+ ++ + ++ + + + +
Sbjct: 378 VDLLCRARLLDEALELTKAMPMSPDVRIMGALLSACKENGNTELPQEILDRFVEL--DSH 435
Query: 354 DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
D GV+ L+ +++ +N++W+ R+R+LM + ++K GS+VI
Sbjct: 436 DSGVYVLLSNIHAINQRWDDVTRIRRLMKEKGIKKPPGSTVI 477
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 101/214 (47%), Gaps = 8/214 (3%)
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
++A+++ Y ++R ++ +G PD T AVL C+ VG+ G+ HG
Sbjct: 2 FNALVSGYAIGDRPKTAFLVYRRIV-KDGFLPDMFTFPAVLKSCAKF--VGIGEGRQVHG 58
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
I+K + N + LV Y+ C A VF+ M R+V+SWT +I G G ++
Sbjct: 59 VIIKMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDE 118
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
A+ LF M V+PN TF VL AC G + G K + + ++ ++
Sbjct: 119 AVGLFLRMD---VEPNAATFVSVLVACGRKGYLSVG-KGIHGLSFKSAFGVGLEVSNALM 174
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
D++ K G L A +V + E +++ W S ++
Sbjct: 175 DMYVKCGCLPGAKQVFDELA-EKDIVSWTSIISG 207
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/237 (19%), Positives = 95/237 (40%), Gaps = 38/237 (16%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF M + D + +L +C L +H HI + + + T+++
Sbjct: 218 LELFQDMQSSGIEPDGIILTSVLSACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDM 277
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + ++F+ +P +N +TWN ++ G + G+ +
Sbjct: 278 YAKCGCIEMSMQIFNGMPHKNVLTWNALLNGLAMHGHAYKV------------------- 318
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
L+LF EM+ G+ P+++T A+L+ C H G V G+ ++
Sbjct: 319 ------------LELFEEMV-RVGMRPNEVTFLAILTACCHCGLVN--EGRQYFNWMKGQ 363
Query: 180 EWELNEQIA--TILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSE 233
++ L ++ +VD+ + L AL + + M +V AL+ G +E
Sbjct: 364 QYNLPPRLEHYGCMVDLLCRARLLDEALELTKAMPMSPDVRIMGALLSACKENGNTE 420
>gi|413946997|gb|AFW79646.1| hypothetical protein ZEAMMB73_771020 [Zea mays]
Length = 505
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 129/348 (37%), Positives = 205/348 (58%), Gaps = 6/348 (1%)
Query: 49 SHVYVATSLLHEYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERM 107
S +V++SL+ Y AR +FDE+ R+ V WN MI GY K+G+ AR+ F+ M
Sbjct: 111 SDAHVSSSLVQLYCTCGHVADARSVFDEMAVRDVVAWNVMIAGYVKAGDQAHARELFDAM 170
Query: 108 PLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL 167
P RNV SW+ +I Y + +++FR M EG+ D + + +VL+ C LG+V L
Sbjct: 171 PERNVVSWTTVIGGYAQMKRPEKAVEVFRRM-QVEGIEADGVALLSVLAACGDLGAVDL- 228
Query: 168 MGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSA 227
G+ H F+V+ + ++DMY KCG ++ A+ VFE MEE++V++WT LI G A
Sbjct: 229 -GEWVHRFVVRRGLCQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFA 287
Query: 228 HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRI 287
G A+ +F M+ + PN +TF +L+AC H GL D GR YF ++ +Y ++PR+
Sbjct: 288 LHGLGLQAVEMFCRMERENMAPNAVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPRV 347
Query: 288 QHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALR 347
+HYGCMVDL G+AG L+EA ++++ M L+ N IWG+ LAA + H + E+ + +
Sbjct: 348 EHYGCMVDLLGRAGCLKEAQDLVKNMPLKANAAIWGALLAAARTHGDAGLGEQALLHLIE 407
Query: 348 MVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ +P N G + L+ +++ E+W ++RK M + +R G+S I
Sbjct: 408 L-EPNNSGN-YILLSNIFAEQERWGDVSKLRKAMRERGLRNVPGASSI 453
>gi|147846621|emb|CAN83751.1| hypothetical protein VITISV_040023 [Vitis vinifera]
Length = 496
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 123/294 (41%), Positives = 185/294 (62%), Gaps = 4/294 (1%)
Query: 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+V A++LFDE+PERN V+ N+M+ G+ K GNV +A F MP R+V SW++M+A
Sbjct: 108 IVGKIDEAKRLFDEMPERNLVSXNSMLXGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLAC 167
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y G + L LF +M + G+ P + T+ ++LS C+HLG+ L G H +I N
Sbjct: 168 YAQCGKPNEALALFDQMXA-VGVKPSEATVVSLLSACAHLGA--LDKGLHLHTYINDNRI 224
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
E+N + T LVDMYAKCG + A VF ME ++V++W +I G A G+ ++A LF+
Sbjct: 225 EVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKE 284
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M+ GV+PN++TF +L+AC H G+VDEG+K + Y +EP+++HYGC++DL +AG
Sbjct: 285 MKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAG 344
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
LEEA E+I TM +EPN G+ L C+ H F++ E V K+ + + +P G
Sbjct: 345 LLEEAMELIGTMPMEPNPCALGALLGGCRIHGNFELGEMVGKRLINL-QPCQSG 397
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 136/292 (46%), Gaps = 46/292 (15%)
Query: 38 LHSHILKLGFISHVYVATSLLHEYVV-TSFGFARKLFDELPERNAVTWNTMIKGYSKSGN 96
+H+H+ K GF Y+ +SL+H Y G A++LF+ +R+ V+WN MI GY K G
Sbjct: 22 VHTHV-KSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSDRDLVSWNAMIDGYVKRGE 80
Query: 97 VCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLS 156
+ AR F+RM R+V SW+ MI Y G D +LF EM ++ + M G
Sbjct: 81 MGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPERNLVSXNSMLXG---- 136
Query: 157 GCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNV 216
+ KCG ++ A +F M R+V
Sbjct: 137 --------------------------------------FVKCGNVEDAFGLFSEMPCRDV 158
Query: 217 ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKM 276
+SW +++ A G +AL+LF+ M A GVKP+E T +L+AC H G +D+G
Sbjct: 159 VSWNSMLACYAQCGKPNEALALFDQMXAVGVKPSEATVVSLLSACAHLGALDKGLHLHTY 218
Query: 277 IDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
I++ +E +VD++ K G + A +V M +V+ W + +A
Sbjct: 219 INDNR-IEVNSIVGTALVDMYAKCGKISLATQVFNAME-SKDVLAWNTIIAG 268
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 102/230 (44%), Gaps = 29/230 (12%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF QM V +++ +L +C H L HLH++I + V T+L+
Sbjct: 178 LALFDQMXAVGVKPSEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDM 237
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA----SW 115
Y A ++F+ + ++ + WNT+I G + G+V EA+ F+ M V ++
Sbjct: 238 YAKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITF 297
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLG------------- 162
AM++A +AG D G KL M S+ G+ P G V+ + G
Sbjct: 298 VAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMP 357
Query: 163 ------SVGLLMGKSAHGFIVKNEWELNEQIATILVDMY-AKCGFLKYAL 205
++G L+G G + +EL E + L+++ + G LK A+
Sbjct: 358 MEPNPCALGALLG----GCRIHGNFELGEMVGKRLINLQPCQSGRLKSAI 403
>gi|297738897|emb|CBI28142.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 145/436 (33%), Positives = 231/436 (52%), Gaps = 77/436 (17%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF Q+ + + D+F+ + K+ + ++ ++K G YV SL+ Y
Sbjct: 119 LFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYA 178
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKS--------------------------- 94
V R++F+E+P+R+ V+WN +I GY K
Sbjct: 179 EVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRQIFNDMPIKTVICWTS 238
Query: 95 --------GNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
G + EAR+ FER P+R+V W+AMI Y+ +D + LFREM + ++P
Sbjct: 239 MVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREM-QIKRVSP 297
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
D+ T+ A+L+ + + T L++MYAKCGF++ +L
Sbjct: 298 DRFTLVALLT---------------------------DAVVGTALIEMYAKCGFIEKSLE 330
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
+F ++E++ SWT++ICG A G + AL LF M TGVKP+++TF GVL+AC H GL
Sbjct: 331 IFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGL 390
Query: 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPN------VI 320
V+EGRK+F+ + Y +EP+++HYGC++DL G+AG L+EA E+I PN V
Sbjct: 391 VEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEK---SPNVNNEVIVP 447
Query: 321 IWGSFLAACKEHKQFDMAERVIKQALRMVKPEN-DGGVFTLICDLYTMNEKWEGAERVRK 379
++G+ L+AC+ H +M ERV K R+V E+ D V TL+ ++Y ++WE +VR+
Sbjct: 448 LYGALLSACRTHGNVEMGERVAK---RLVGIESGDSSVHTLLANIYASADRWEDVTKVRR 504
Query: 380 LMLNQNVRKARGSSVI 395
M + V+K G S +
Sbjct: 505 KMKDLGVKKVPGCSSV 520
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 93/181 (51%), Gaps = 3/181 (1%)
Query: 95 GNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAV 154
GN+ A F + + + ++ +I A+ G++ + LFR++ EGL+PD T V
Sbjct: 80 GNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQL-REEGLSPDNFTYPFV 138
Query: 155 LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER 214
LG V G+ +GF+VK+ E + + L+DMYA+ G ++ VFE M +R
Sbjct: 139 FKAIGCLGEVR--EGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQR 196
Query: 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF 274
+V+SW LI G EDA+ +F + + +T +++ V+ G +DE R+ F
Sbjct: 197 DVVSWNVLISGYVKCRRYEDAVDVFRQIFNDMPIKTVICWTSMVSGYVNCGQLDEARELF 256
Query: 275 K 275
+
Sbjct: 257 E 257
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 83/209 (39%), Gaps = 51/209 (24%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
Q+F +M ++ V S + I +K + + + V + + + I V TS++ Y
Sbjct: 188 QVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRQIFNDMP----IKTVICWTSMVSGY 243
Query: 62 V-VTSFGFARKLFDELPERNAVTWNTMIKG------------------------------ 90
V AR+LF+ P R+ V W MI G
Sbjct: 244 VNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLV 303
Query: 91 ---------------YSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF 135
Y+K G + ++ + F + ++ ASW+++I G L+LF
Sbjct: 304 ALLTDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELF 363
Query: 136 REMISNEGLTPDQMTIGAVLSGCSHLGSV 164
EM+ G+ PD +T VLS CSH G V
Sbjct: 364 AEMVQT-GVKPDDITFIGVLSACSHGGLV 391
>gi|224123726|ref|XP_002330193.1| predicted protein [Populus trichocarpa]
gi|222871649|gb|EEF08780.1| predicted protein [Populus trichocarpa]
Length = 485
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 144/400 (36%), Positives = 223/400 (55%), Gaps = 14/400 (3%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+LFS M + + D +++ +LK+C+ L + +H +L +GF + ++ Y
Sbjct: 93 RLFSSMKNRGIWPDEYTLAPLLKACSSLGVLQLGKCMHKEVLVVGFEGFSAIRIGVIELY 152
Query: 62 VVTSFGF---ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
+S G A K+FDE+ +R+ + WN MI G+ K G+V F +M R+V SW+ M
Sbjct: 153 --SSCGVMEDAEKVFDEMYQRDVIVWNLMIHGFCKRGDVDMGLCLFRQMRKRSVVSWNIM 210
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I+ + L LF +M+ + G PD+ T+ VL C+ LGSV + GK H + K
Sbjct: 211 ISCLAQSRRDSEALGLFHDML-DWGFKPDEATVVTVLPICARLGSVDV--GKWIHSY-AK 266
Query: 179 NEWELNEQIA--TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
+ + +A LVD Y K G + A VF+ M +NVISW LI G A G E +
Sbjct: 267 SSGLYRDFVAVGNALVDFYNKSGMFETARRVFDEMPRKNVISWNTLISGLALNGNGELGV 326
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
L E M GV+PN+ TF GVL+ C H GL + GR+ + E + +EP+++HYGCMVDL
Sbjct: 327 ELLEEMMNEGVRPNDATFVGVLSCCAHAGLFERGRELLASMVEHHQIEPKLEHYGCMVDL 386
Query: 297 FGKAGFLEEAYEVIRTMR-LEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
G++G + EAY++IR M PN +WGS L+AC+ H ++A +K+ + + +P N G
Sbjct: 387 LGRSGCVREAYDLIRIMPGGAPNAALWGSLLSACRTHGDVELAHLAVKELIDL-EPWNSG 445
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ ++Y E+W+ VR +M +NV+K G SVI
Sbjct: 446 N-YVLLSNMYAEEERWDKVANVRGMMREKNVKKTPGQSVI 484
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 90/369 (24%), Positives = 144/369 (39%), Gaps = 80/369 (21%)
Query: 33 TVIHHLHSHILKLGF------ISH-VYVATSLLHEYVVTSFGFARKLFDELPERNAVTWN 85
T + +H+H L+ G +SH V + SL +A ++F + + +N
Sbjct: 23 TQLREIHAHFLRHGLNQLNQILSHFVSICGSL------NKMAYANRIFKQTQNPTIILFN 76
Query: 86 TMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLT 145
MIKGYS LN G ++ +LF M N G+
Sbjct: 77 AMIKGYS------------------------------LN-GPFEESFRLFSSM-KNRGIW 104
Query: 146 PDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYAL 205
PD+ T+ +L CS LG L +GK H ++ +E I ++++Y+ CG ++ A
Sbjct: 105 PDEYTLAPLLKACSSLGV--LQLGKCMHKEVLVVGFEGFSAIRIGVIELYSSCGVMEDAE 162
Query: 206 MVFELMEERNVISWTALICGSAHRG-------------------------------YSED 234
VF+ M +R+VI W +I G RG +
Sbjct: 163 KVFDEMYQRDVIVWNLMIHGFCKRGDVDMGLCLFRQMRKRSVVSWNIMISCLAQSRRDSE 222
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
AL LF M G KP+E T VL C G VD G+ + +V
Sbjct: 223 ALGLFHDMLDWGFKPDEATVVTVLPICARLGSVDVGKWIHSYAKSSGLYRDFVAVGNALV 282
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-VKPEN 353
D + K+G E A V M NVI W + ++ + ++ ++++ + V+P +
Sbjct: 283 DFYNKSGMFETARRVFDEMP-RKNVISWNTLISGLALNGNGELGVELLEEMMNEGVRPND 341
Query: 354 DGGVFTLIC 362
V L C
Sbjct: 342 ATFVGVLSC 350
>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
Length = 686
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 144/456 (31%), Positives = 236/456 (51%), Gaps = 67/456 (14%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVA-------- 54
LF QM + + F+ +LKSC N L +H ++K GF + +V
Sbjct: 186 LFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYS 245
Query: 55 -----------------------TSLLHEYVVTS------------------------FG 67
TS+++ Y++++ G
Sbjct: 246 AGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSG 305
Query: 68 F--------ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
+ ARKLF E+P R+ + WNT++KGY+ +GNV FE MP RN+ SW+A+I
Sbjct: 306 YIEGGDMVEARKLFXEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALI 365
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y + G + L F+ M+S + P+ T+ VLS C+ LG++ L GK H + +
Sbjct: 366 GGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDL--GKWVHVYAESS 423
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ N + L+DMYAKCG ++ A+ VF M+ +++ISW LI G A DAL+LF
Sbjct: 424 GLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLF 483
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M+ G KP+ +TF G+L AC H GLV++G YF+ + ++Y + P+I+HYGCMVD+ +
Sbjct: 484 FQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLAR 543
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG LE+A +R M +E + +IW L AC+ +K ++AE +++ + + +P+N +
Sbjct: 544 AGRLEQAXAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIEL-EPKNPAN-YV 601
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++ ++Y +WE R++ M + +K G S+I
Sbjct: 602 MLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLI 637
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 106/241 (43%), Gaps = 39/241 (16%)
Query: 35 IHHLHSHILKLGFISHVYVATSLLHE-YVVTSFGFARKLFDELPERNAVTWNTMIKGYSK 93
+H + + I+ GF + Y+ L+ + +AR+LFD++P+ N WN+M +GY++
Sbjct: 117 VHQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQ 176
Query: 94 SGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGA 153
S + E F +M ++ P+ T
Sbjct: 177 SESYREVVFLFFQMKGMDI--------------------------------RPNCFTFPV 204
Query: 154 VLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE 213
VL C + + L+ G+ H F++K + N + T L+DMY+ G + A +F M E
Sbjct: 205 VLKSCGKINA--LIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFE 262
Query: 214 RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKY 273
RNV++WT++I G A LF++ V + + +++ + G + E RK
Sbjct: 263 RNVVAWTSMINGYILSADLVSARRLFDLAPERDV----VLWNIMVSGYIEGGDMVEARKL 318
Query: 274 F 274
F
Sbjct: 319 F 319
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 93/212 (43%), Gaps = 9/212 (4%)
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
I+ N ++ NE I LV + A + YA +F+ + + N+ W ++ G A +
Sbjct: 124 IIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREV 183
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMV 294
+ LF M+ ++PN TF VL +C + EG + + +I + P + ++
Sbjct: 184 VFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGT--TLI 241
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
D++ G + +AY++ M E NV+ W S + A R+ A PE D
Sbjct: 242 DMYSAGGTVGDAYKIFCEM-FERNVVAWTSMINGYILSADLVSARRLFDLA-----PERD 295
Query: 355 GGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386
++ ++ Y A ++ M N++V
Sbjct: 296 VVLWNIMVSGYIEGGDMVEARKLFXEMPNRDV 327
>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 2000
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 144/395 (36%), Positives = 227/395 (57%), Gaps = 7/395 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF +M ++ + IL + L ++H H+ K+GF V+V++SL+
Sbjct: 301 LRLFCRMIQEGFKPNISCFSSILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDM 360
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y R LFD + E+N V+WN M+ GYS +G++ EA+ F MP+RN SWSA+I
Sbjct: 361 YCKCGETKDGRFLFDTILEKNMVSWNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAII 420
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A +L+ +D ++F EMI G P++ T ++L C+ S L GK+ HG IVK
Sbjct: 421 AGHLDCEQFDEMFEVFNEMIL-LGEIPNKSTFSSLLCACASTAS--LDKGKNLHGKIVKL 477
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + + T L DMYAK G ++ + VF M ++N +SWTA+I G A G +E++L+LF
Sbjct: 478 GIQCDTYVGTALTDMYAKSGDIESSKKVFNRMPKKNEVSWTAMIQGLAESGLAEESLTLF 537
Query: 240 EMMQATG-VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
E M+ T + PNE+ F VL AC H+GLVD+G YF ++ Y L+P+ +H+ C+VD+
Sbjct: 538 EEMEKTSSIAPNEVMFLAVLFACSHSGLVDKGLWYFNSMEAVYGLKPKGRHFTCVVDMLS 597
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG L EA E I +M +P W + L+ CK +K ++AERV + M E + +
Sbjct: 598 RAGRLFEAEEFIYSMPFQPETNAWAALLSGCKTYKNEELAERVAGKLWEMA--EKNCAGY 655
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
L+ ++Y +W +VRKLM + ++K+ G S
Sbjct: 656 VLLSNIYASAGRWRDVLKVRKLMKAKGLKKSGGCS 690
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 117/423 (27%), Positives = 185/423 (43%), Gaps = 107/423 (25%)
Query: 38 LHSHILKLGFISHVYVATSLLHEY-----------VVTSF-GF----------------- 68
LH+H+ K G S Y++ LL Y + F GF
Sbjct: 43 LHAHLFKTGISSEQYISIKLLIMYLNYRKSAEADQISKDFDGFDLVVHNCMISANVQRGN 102
Query: 69 ---ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
ARKLFDE+P+ N ++W +I G+ K G V E+ +FER P +NV SW+A I+ Y+
Sbjct: 103 LDEARKLFDEMPQTNEISWTALISGFMKYGRVRESMWYFERNPFQNVVSWTAAISGYVQN 162
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
G +KLF +++ +E + P+++T +V+ C++LG GL G S G IVK +E +
Sbjct: 163 GFSVEAMKLFIKLLESE-VKPNKVTFTSVVRACANLGDFGL--GMSVLGLIVKTGYEHDL 219
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALI--------CGSAHR-------- 229
++ L+ + + G + A VF+ MEE++V+SWTA++ G A R
Sbjct: 220 AVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVEMDELGEARRIFDEMPQR 279
Query: 230 ---------------GYSEDALSLFEMMQATGVKPNEMTFTGVLTAC------------- 261
GY E++L LF M G KPN F+ +L+A
Sbjct: 280 NEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSSILSALASVEALQAGMNIH 339
Query: 262 -------------VHTGLVD---------EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
V + L+D +GR F I LE + + MV +
Sbjct: 340 GHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTI-----LEKNMVSWNAMVGGYSL 394
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
G +EEA + M + NV W + +A + +QFD V + + + + N +
Sbjct: 395 NGHMEEAKYLFNIMPVRNNV-SWSAIIAGHLDCEQFDEMFEVFNEMILLGEIPNKSTFSS 453
Query: 360 LIC 362
L+C
Sbjct: 454 LLC 456
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 99/366 (27%), Positives = 174/366 (47%), Gaps = 43/366 (11%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
M+LF ++ V + + ++++C + + + + I+K G+ + V+ SL+
Sbjct: 169 MKLFIKLLESEVKPNKVTFTSVVRACANLGDFGLGMSVLGLIVKTGYEHDLAVSNSLITL 228
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
+ + AR++FD + E++ V+W ++ Y + + EAR F+ MP RN SWSAMI
Sbjct: 229 CLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVEMDELGEARRIFDEMPQRNEVSWSAMI 288
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV-GLLMGKSAHGFIVK 178
A Y +G + L+LF MI EG P+ ++LS L SV L G + HG + K
Sbjct: 289 ARYCQSGYPEESLRLFCRMI-QEGFKPNISCFSSILSA---LASVEALQAGMNIHGHVTK 344
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+E + +++ L+DMY KCG K +F+ + E+N++SW A++ G + G+ E+A L
Sbjct: 345 IGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVSWNAMVGGYSLNGHMEEAKYL 404
Query: 239 FEMMQAT-------------------------------GVKPNEMTFTGVLTACVHTGLV 267
F +M G PN+ TF+ +L AC T +
Sbjct: 405 FNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEIPNKSTFSSLLCACASTASL 464
Query: 268 DEGRKYFKMIDEEYDLEPRIQHY--GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSF 325
D+G+ I L + Y + D++ K+G +E + +V M + N + W +
Sbjct: 465 DKGKNLHGKI---VKLGIQCDTYVGTALTDMYAKSGDIESSKKVFNRMP-KKNEVSWTAM 520
Query: 326 LAACKE 331
+ E
Sbjct: 521 IQGLAE 526
>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 623
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 144/456 (31%), Positives = 236/456 (51%), Gaps = 67/456 (14%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVA-------- 54
LF QM + + F+ +LKSC N L +H ++K GF + +V
Sbjct: 123 LFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYS 182
Query: 55 -----------------------TSLLHEYVVTS------------------------FG 67
TS+++ Y++++ G
Sbjct: 183 AGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSG 242
Query: 68 F--------ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
+ ARKLF E+P R+ + WNT++KGY+ +GNV FE MP RN+ SW+A+I
Sbjct: 243 YIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALI 302
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y + G + L F+ M+S + P+ T+ VLS C+ LG++ L GK H + +
Sbjct: 303 GGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDL--GKWVHVYAESS 360
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ N + L+DMYAKCG ++ A+ VF M+ +++ISW LI G A DAL+LF
Sbjct: 361 GLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLF 420
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M+ G KP+ +TF G+L AC H GLV++G YF+ + ++Y + P+I+HYGCMVD+ +
Sbjct: 421 FQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLAR 480
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG LE+A +R M +E + +IW L AC+ +K ++AE +++ + + +P+N +
Sbjct: 481 AGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIEL-EPKNPAN-YV 538
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++ ++Y +WE R++ M + +K G S+I
Sbjct: 539 MLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLI 574
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 112/256 (43%), Gaps = 42/256 (16%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE-YVVTSFGFARKLFDELPE 78
+ +L+SC +H + + I+ GF + Y+ L+ + +AR+LFD++P+
Sbjct: 42 ISLLQSCKTSKQ---VHQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPD 98
Query: 79 RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM 138
N WN+M +GY++S + E F +M ++
Sbjct: 99 PNIALWNSMFRGYAQSESYREVVFLFFQMKGMDI-------------------------- 132
Query: 139 ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198
P+ T VL C + + L+ G+ H F++K + N + T L+DMY+
Sbjct: 133 ------RPNCFTFPVVLKSCGKINA--LIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAG 184
Query: 199 GFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL 258
G + A +F M ERNV++WT++I G A LF++ V + + ++
Sbjct: 185 GTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDV----VLWNIMV 240
Query: 259 TACVHTGLVDEGRKYF 274
+ + G + E RK F
Sbjct: 241 SGYIEGGDMVEARKLF 256
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 93/212 (43%), Gaps = 9/212 (4%)
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
I+ N ++ NE I LV + A + YA +F+ + + N+ W ++ G A +
Sbjct: 61 IIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREV 120
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMV 294
+ LF M+ ++PN TF VL +C + EG + + +I + P + ++
Sbjct: 121 VFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGT--TLI 178
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
D++ G + +AY++ M E NV+ W S + A R+ A PE D
Sbjct: 179 DMYSAGGTVGDAYKIFCEM-FERNVVAWTSMINGYILSADLVSARRLFDLA-----PERD 232
Query: 355 GGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386
++ ++ Y A ++ M N++V
Sbjct: 233 VVLWNIMVSGYIEGGDMVEARKLFHEMPNRDV 264
>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 652
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 130/387 (33%), Positives = 229/387 (59%), Gaps = 8/387 (2%)
Query: 11 SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFA 69
+V D +++ ++ +L + LH ++ G V + ++ Y+ A
Sbjct: 217 AVTPDEVTMIGVVSGSAQLRDLELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCGDLERA 276
Query: 70 RKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYD 129
+ +F+ + ++ V+W TMI GY++ G + +AR F+ MP R+V W+A++ Y+
Sbjct: 277 KSVFEGIDKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGK 336
Query: 130 PGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIAT 189
L+LF +M + PD +T+ +LS CS LG+ L MG H +I + L+ + T
Sbjct: 337 EALRLFHDM-QEAMVEPDDITMVNLLSACSQLGA--LEMGMWVHHYIDRRRVSLSVMLGT 393
Query: 190 ILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP 249
LVDMY+KCG ++ A+ VF+ + E+N ++WTA+I G A+ G+++ A+ F+ M G++P
Sbjct: 394 NLVDMYSKCGNIEKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQP 453
Query: 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEV 309
+E+TF GVL+AC H GLV EG+++F ++ +Y LE +++HY CMVDL G+AG+L+EA +
Sbjct: 454 DEITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEHL 513
Query: 310 IRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE-NDGGVFTLICDLYTMN 368
+ TM +EP+ ++WG+ AC+ H + E K A+++V+ + D G++ L+ ++Y
Sbjct: 514 VNTMPMEPDAVVWGALFFACRMHGNITLGE---KAAMKLVELDPGDSGIYVLLANMYAEA 570
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
+ A++VR +M + V K G S I
Sbjct: 571 NMRKKADKVRVMMRHLGVEKVPGCSCI 597
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 95/406 (23%), Positives = 180/406 (44%), Gaps = 69/406 (16%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+ + R + P D + +LK+C + + ++L LGF + V+V + +H
Sbjct: 106 LPLYCSLLRSARP-DHLTFPFLLKACARLQERNYGNAVLGNVLSLGFHADVFVVNAAMHF 164
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
V S ++ EAR F+ +R++ SW+ +I
Sbjct: 165 LAVCS------------------------------SMAEARKLFDGSHVRDLVSWNTLIG 194
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y+ G L++F M+ + +TPD++T+ V+SG + L + L G+ HG++ +
Sbjct: 195 GYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDLEL--GRRLHGYVESHG 252
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED------ 234
++ +++DMY KCG L+ A VFE ++++ ++SWT +I G A G +D
Sbjct: 253 VRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTTMIVGYAQFGLMDDARKVFD 312
Query: 235 -------------------------ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
AL LF MQ V+P+++T +L+AC G ++
Sbjct: 313 EMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLGALEM 372
Query: 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAAC 329
G ID + + +VD++ K G +E+A V + + E N + W + ++
Sbjct: 373 GMWVHHYIDRRR-VSLSVMLGTNLVDMYSKCGNIEKAIRVFKEIP-EKNALTWTAMISGL 430
Query: 330 KEHKQFDMAERVIKQALRM-VKPENDG--GVFTLICDLYTMNEKWE 372
H D+A + ++ + + ++P+ GV + C + E E
Sbjct: 431 ANHGHADVAIKYFQRMIELGLQPDEITFIGVLSACCHAGLVKEGQE 476
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 96/228 (42%), Gaps = 43/228 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF M V D +++++L +C+ L + +H +I + V + T+L+
Sbjct: 339 LRLFHDMQEAMVEPDDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDM 398
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + A ++F E+PE+NA+TW MI G +
Sbjct: 399 YSKCGNIEKAIRVFKEIPEKNALTWTAMISGLA--------------------------- 431
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF---- 175
N G D +K F+ MI GL PD++T VLS C H G V K F
Sbjct: 432 ----NHGHADVAIKYFQRMI-ELGLQPDEITFIGVLSACCHAGLV-----KEGQEFFSLM 481
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTAL 222
+ K E + + +VD+ + G+L A + M E + + W AL
Sbjct: 482 VSKYHLERKMKHYSCMVDLLGRAGYLDEAEHLVNTMPMEPDAVVWGAL 529
>gi|125595888|gb|EAZ35668.1| hypothetical protein OsJ_19954 [Oryza sativa Japonica Group]
Length = 510
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 129/361 (35%), Positives = 221/361 (61%), Gaps = 8/361 (2%)
Query: 39 HSHILKLGFI--SHVYVATSLLHEYVVTSFGF-ARKLFDELPERNAVTWNTMIKGYSKSG 95
HS ++KLG S +++++L+ Y + ARK+FDEL R+ +N ++ Y+K G
Sbjct: 108 HSLLIKLGHFASSDPFLSSALVSFYAKSKLLVEARKVFDELTCRDTAVYNALLSAYAKGG 167
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155
V A FE MP RNV SW+AM++ Y G ++ ++ F EM G+ P+++T+ +VL
Sbjct: 168 LVDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVL 227
Query: 156 SGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFE-LMEER 214
C+ +G++ L G+ + N +A L++MY+KCG ++ A VF+ + ++
Sbjct: 228 PACAAVGAMEL--GRKVEEYARGKGLLRNVYVANALLEMYSKCGSIRQAWQVFQGIGRQQ 285
Query: 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF 274
++ SW ++I A G +AL+LF ++ GVKP+ +TF GV+ AC H GLV+EG+ +F
Sbjct: 286 DLCSWNSMIMAFAVHGLWREALALFYKLRMAGVKPDGITFVGVILACTHGGLVNEGKLFF 345
Query: 275 KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
++ E+ L+PRI+HYGCMVDL G+AG L E+Y +I +M +EP+ +IWG+ L AC H
Sbjct: 346 DSMEAEFSLKPRIEHYGCMVDLLGRAGLLIESYSLIASMPVEPDAVIWGALLGACSFHGN 405
Query: 335 FDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSV 394
++AE + + + + +P+N + ++ ++Y + KW+G +V KL+ ++ +K+ G S
Sbjct: 406 VELAELAMDKLIHL-EPQNTANL-VILSNIYASSGKWDGVAQVWKLLKEKDHKKSAGYSF 463
Query: 395 I 395
I
Sbjct: 464 I 464
>gi|6983870|dbj|BAA90805.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125553873|gb|EAY99478.1| hypothetical protein OsI_21446 [Oryza sativa Indica Group]
Length = 510
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 129/361 (35%), Positives = 221/361 (61%), Gaps = 8/361 (2%)
Query: 39 HSHILKLGFI--SHVYVATSLLHEYVVTSFGF-ARKLFDELPERNAVTWNTMIKGYSKSG 95
HS ++KLG S +++++L+ Y + ARK+FDEL R+ +N ++ Y+K G
Sbjct: 108 HSLLIKLGHFASSDPFLSSALVSFYAKSKLLVEARKVFDELTCRDTAVYNALLSAYAKGG 167
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155
V A FE MP RNV SW+AM++ Y G ++ ++ F EM G+ P+++T+ +VL
Sbjct: 168 LVDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVL 227
Query: 156 SGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFE-LMEER 214
C+ +G++ L G+ + N +A L++MY+KCG ++ A VF+ + ++
Sbjct: 228 PACAAVGAMEL--GRKVEEYARGKGLLRNVYVANALLEMYSKCGSIRQAWQVFQGIGRQQ 285
Query: 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF 274
++ SW ++I A G +AL+LF ++ GVKP+ +TF GV+ AC H GLV+EG+ +F
Sbjct: 286 DLCSWNSMIMAFAVHGLWREALALFYKLRMAGVKPDGITFVGVILACTHGGLVNEGKLFF 345
Query: 275 KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
++ E+ L+PRI+HYGCMVDL G+AG L E+Y +I +M +EP+ +IWG+ L AC H
Sbjct: 346 DSMEAEFSLKPRIEHYGCMVDLLGRAGLLIESYSLIASMPVEPDAVIWGALLGACSFHGN 405
Query: 335 FDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSV 394
++AE + + + + +P+N + ++ ++Y + KW+G +V KL+ ++ +K+ G S
Sbjct: 406 VELAELAMDKLIHL-EPQNTANL-VILSNIYASSGKWDGVAQVWKLLKEKDHKKSAGYSF 463
Query: 395 I 395
I
Sbjct: 464 I 464
>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
Length = 1495
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 133/385 (34%), Positives = 227/385 (58%), Gaps = 36/385 (9%)
Query: 12 VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARK 71
V D+ + ++K+ T ++ + +HS +++ GF S +YV SLLH Y
Sbjct: 117 VEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLY---------- 166
Query: 72 LFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPG 131
+ G+V A F++MP +++ +W+++I + G +
Sbjct: 167 --------------------ANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEA 206
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
L L+ EM S +G+ PD TI ++LS C+ +G+ L +GK H +++K N + +L
Sbjct: 207 LALYTEMNS-KGIKPDGFTIVSLLSACAKIGA--LTLGKRVHVYMIKVGLTRNLHSSNVL 263
Query: 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT-GVKPN 250
+D+YA+CG ++ A +F+ M ++N +SWT+LI G A G+ ++A+ LF+ M++T G+ P
Sbjct: 264 LDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPC 323
Query: 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI 310
E+TF G+L AC H G+V EG +YF+ + EEY +EPRI+H+GCMVDL +AG +++AYE I
Sbjct: 324 EITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYI 383
Query: 311 RTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEK 370
++M ++PNV+IW + L AC H D+AE Q L++ +P N G + L+ ++Y ++
Sbjct: 384 KSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQL-EP-NHSGDYVLLSNMYASEQR 441
Query: 371 WEGAERVRKLMLNQNVRKARGSSVI 395
W +++RK ML V+K G S++
Sbjct: 442 WSDVQKIRKQMLRDGVKKVPGHSLV 466
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 148/305 (48%), Gaps = 45/305 (14%)
Query: 30 NNLTVIHHLHSHILKLGF-ISHVYVATSLLHEYVVT-----SFGFARKLFDELPER-NAV 82
+++T + +H+ ++ G IS + L+ Y+V+ +A K+F ++ + N
Sbjct: 28 SSITKLRQIHAFSIRHGVSISDAELGKHLIF-YLVSLPSPPPMSYAHKVFSKIEKPINVF 86
Query: 83 TWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNE 142
WNT+I+GY++ GN I+A+ L+REM +
Sbjct: 87 IWNTLIRGYAEIGN---------------------SISAF----------SLYREMRVSG 115
Query: 143 GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLK 202
+ PD T ++ + + V L G++ H ++++ + + L+ +YA CG +
Sbjct: 116 LVEPDTHTYPFLIKAVTTMADVRL--GETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVA 173
Query: 203 YALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACV 262
A VF+ M E+++++W ++I G A G E+AL+L+ M + G+KP+ T +L+AC
Sbjct: 174 SAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACA 233
Query: 263 HTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVII 321
G + G++ + MI + L + ++DL+ + G +EEA + M ++ N +
Sbjct: 234 KIGALTLGKRVHVYMI--KVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM-VDKNSVS 290
Query: 322 WGSFL 326
W S +
Sbjct: 291 WTSLI 295
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 117/257 (45%), Gaps = 46/257 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+++M+ + + D F+I+ +L +C LT+ +H +++K+G
Sbjct: 207 LALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLT------------ 254
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
RN + N ++ Y++ G V EA+ F+ M +N SW+++I
Sbjct: 255 ------------------RNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIV 296
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF----I 176
G ++LF+ M S EGL P ++T +L CSH G V GF
Sbjct: 297 GLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMV-------KEGFEYFRR 349
Query: 177 VKNEWELNEQIA--TILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSE 233
++ E+++ +I +VD+ A+ G +K A + M + NV+ W L+ G S+
Sbjct: 350 MREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSD 409
Query: 234 DALSLFEMMQATGVKPN 250
L+ F +Q ++PN
Sbjct: 410 --LAEFARIQILQLEPN 424
>gi|125539857|gb|EAY86252.1| hypothetical protein OsI_07623 [Oryza sativa Indica Group]
Length = 629
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 141/361 (39%), Positives = 211/361 (58%), Gaps = 17/361 (4%)
Query: 43 LKLGFISHVYVATSLLHEYVVTSFGF----ARKLFDELPERNAVTWNTMIKGYSKSGNVC 98
K G ++H V SLL Y S G R L+ + V+WNTM+ GY K G++
Sbjct: 105 FKCGALAHPVVTNSLLKLYC--SLGLIDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLG 162
Query: 99 EARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGC 158
AR+ F RMP RN+ SWSAM+ A + AG + L +F M+ E PD + + +VL C
Sbjct: 163 AAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREE-FRPDVVVLVSVLKAC 221
Query: 159 SHLGSVGLLMGKSAHGFIVKNEW---ELNEQIATILVDMYAKCGFLKYALMVFELMEERN 215
+HLG+V G+ H ++ + N + T LVDMY KCG ++ A VF+ + R+
Sbjct: 222 AHLGAVE--RGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRD 279
Query: 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275
V+ W A+I G A GY E AL LF M G PNE TF VL AC HTG VDEG++ FK
Sbjct: 280 VVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFK 339
Query: 276 MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQF 335
+ ++Y ++P+ +HYGC+ DL G+AG +EEA ++ M +EP+ WG+ +++C+ H
Sbjct: 340 SM-QDYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDI 398
Query: 336 DMAERVIKQALRMVKPEN-DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSV 394
++ ERV K R+++ E DGG + ++ +LY +N +WE A +R++M ++ +K G S
Sbjct: 399 NVGERVGK---RLIELEPYDGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSF 455
Query: 395 I 395
I
Sbjct: 456 I 456
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 97/224 (43%), Gaps = 35/224 (15%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+F +M R+ D ++ +LK+C H ++ G H Y+ T
Sbjct: 198 VFDRMMREEFRPDVVVLVSVLKACAHLG-----------AVERGRWVHRYLETG------ 240
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
SFG R N + ++ Y K G + +A F+ + R+V W+AMI
Sbjct: 241 --SFGGRRG--------NLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGL 290
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV--GLLMGKSAHGFIVKNE 180
G + L+LFR M+ +G P++ T AVL C+H G V G + KS + +K +
Sbjct: 291 AMNGYGERALELFRRML-QKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQDYGIKPQ 349
Query: 181 WELNEQIATILVDMYAKCGFLKYA-LMVFELMEERNVISWTALI 223
E L D+ + G ++ A ++ ++ E + W AL+
Sbjct: 350 REH----YGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALM 389
>gi|449454143|ref|XP_004144815.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
gi|449490933|ref|XP_004158752.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
Length = 484
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 134/393 (34%), Positives = 225/393 (57%), Gaps = 7/393 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LFS M + D ++ +LKSC + ++ + S + + GF + ++ YV
Sbjct: 94 LFSSMKNHRIVPDQYTFAPLLKSCANLCEYSLGQCVISEVFRRGFYCFGSIRIGVVELYV 153
Query: 63 VT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
A K+FDE+ R+ V WN MI+G+ K+GNV F +M R++ SW+ +I+
Sbjct: 154 CCEKMEDAWKMFDEMSHRDVVVWNLMIRGFCKTGNVDFGLCLFRQMSERSLVSWNTIISC 213
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV-KNE 180
L+LF++M G PD++T+ +L CS LG+ L +G+ H + K
Sbjct: 214 LAQNRRDVEALELFQQM-EEHGFKPDEVTVVTMLPVCSRLGA--LEVGQRIHSYASSKGN 270
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ L+D Y KCG ++ A +F+ M ++V+SW +I G A G E A+ LF
Sbjct: 271 LVGITTVGNSLIDFYCKCGNIEKAYNIFQKMTCKSVVSWNTIILGFALNGKGEFAIDLFM 330
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ +KPN+ TF VLTACVH+GL+++GR+ F + E+Y+++P+++H+GCMVDL G+
Sbjct: 331 EMRKEYLKPNDATFVAVLTACVHSGLLEKGRELFSSMAEDYEIQPKLEHFGCMVDLLGRG 390
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G +EEA+++I++M ++PN +WG+ L AC+ H +AE +K+ + + +P N G + L
Sbjct: 391 GCVEEAHKLIKSMPMQPNATLWGAVLGACRTHGNLKLAEMAVKELISL-EPWNSGN-YVL 448
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
+ ++ +WE E VR+ M ++V+KA G S
Sbjct: 449 LSNMLAEEGRWEEVENVRQWMREKSVKKAPGQS 481
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 101/227 (44%), Gaps = 38/227 (16%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF QM D +++ +L C+ L V +HS+ A+S +
Sbjct: 224 LELFQQMEEHGFKPDEVTVVTMLPVCSRLGALEVGQRIHSY------------ASSKGNL 271
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+T+ G N++I Y K GN+ +A + F++M ++V SW+ +I
Sbjct: 272 VGITTVG-----------------NSLIDFYCKCGNIEKAYNIFQKMTCKSVVSWNTIIL 314
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF-IVKN 179
+ G + + LF EM E L P+ T AVL+ C H G L+ K F +
Sbjct: 315 GFALNGKGEFAIDLFMEM-RKEYLKPNDATFVAVLTACVHSG----LLEKGRELFSSMAE 369
Query: 180 EWELNEQIATI--LVDMYAKCGFLKYALMVFELME-ERNVISWTALI 223
++E+ ++ +VD+ + G ++ A + + M + N W A++
Sbjct: 370 DYEIQPKLEHFGCMVDLLGRGGCVEEAHKLIKSMPMQPNATLWGAVL 416
>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
Length = 594
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 139/421 (33%), Positives = 234/421 (55%), Gaps = 39/421 (9%)
Query: 8 HRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY------ 61
R P+D F+ ++ +C+ FN + H+ ++K F V+ SLL Y
Sbjct: 128 QRYVYPND-FTFTYVFSACSKFNGVFEGKQAHAQMIKFPFEFGVHSWNSLLDFYGKVGEV 186
Query: 62 -VVTSFGF--------------------------ARKLFDELPERNAVTWNTMIKGYSKS 94
+V F AR+LFDE+PER+ V+W M+ GY+ +
Sbjct: 187 GIVVRRVFDKIEGPDVVSWNCLINGYVKSGDLDEARRLFDEMPERDVVSWTIMLVGYADA 246
Query: 95 GNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAV 154
G + EA F+ MP RN+ SWSA+I Y+ G Y L+LF+EM + + D++ + +
Sbjct: 247 GFLSEASCLFDEMPKRNLVSWSALIKGYIQIGCYSKALELFKEMQVAK-VKMDEVIVTTL 305
Query: 155 LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER 214
LS C+ LG+ L G+ H +I K+ +++ ++T L+DMY+KCG + A VF+ ++
Sbjct: 306 LSACARLGA--LDQGRWLHMYIDKHGIKVDAHLSTALIDMYSKCGRIDMAWKVFQETGDK 363
Query: 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF 274
V W+++I G A + E A+ LF M G++P+E+T+ +L AC H+GLVD G + F
Sbjct: 364 KVFVWSSMIGGLAMHSFGEKAIELFAKMIECGIEPSEITYINILAACTHSGLVDVGLQIF 423
Query: 275 KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
+ E +PR+QHYGC+VDL G+AG L +A+ V+ TM ++ + IW + L+ACK H+
Sbjct: 424 NRMVENQKPKPRMQHYGCIVDLLGRAGLLHDAFRVVETMPVKADPAIWRALLSACKLHRN 483
Query: 335 FDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSV 394
++ E+V + ++M +P+ND + L ++Y +W+ + ++R+ M + ++K G S
Sbjct: 484 VELGEQVGRILIKM-EPQNDMN-YVLFSNVYAAVNRWDISGKLRREMKVRGMQKNPGCSS 541
Query: 395 I 395
I
Sbjct: 542 I 542
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 89/401 (22%), Positives = 155/401 (38%), Gaps = 112/401 (27%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV----VTSFGFARKLFD- 74
+ +L++C + +L LH+ ++K I Y LL + + S +A+KLFD
Sbjct: 35 ISLLQNCKNPKDLI---QLHTLLIKTSLIKEKYAFGRLLLSFASFDNLGSLNYAQKLFDT 91
Query: 75 -ELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
++P RN+ + TMIK AY N G
Sbjct: 92 VDIP-RNSFMYTTMIK-------------------------------AYANFGNPREAFA 119
Query: 134 LFREMISNEG-LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILV 192
+ M+ ++ + P+ T V S CS G+ GK AH ++K +E L+
Sbjct: 120 FYSRMLCDQRYVYPNDFTFTYVFSACSKFN--GVFEGKQAHAQMIKFPFEFGVHSWNSLL 177
Query: 193 DMYAKCG--------------------------------FLKYALMVFELMEERNVISWT 220
D Y K G L A +F+ M ER+V+SWT
Sbjct: 178 DFYGKVGEVGIVVRRVFDKIEGPDVVSWNCLINGYVKSGDLDEARRLFDEMPERDVVSWT 237
Query: 221 ALICGSAHRGYSED-------------------------------ALSLFEMMQATGVKP 249
++ G A G+ + AL LF+ MQ VK
Sbjct: 238 IMLVGYADAGFLSEASCLFDEMPKRNLVSWSALIKGYIQIGCYSKALELFKEMQVAKVKM 297
Query: 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEV 309
+E+ T +L+AC G +D+GR + M +++ ++ ++D++ K G ++ A++V
Sbjct: 298 DEVIVTTLLSACARLGALDQGR-WLHMYIDKHGIKVDAHLSTALIDMYSKCGRIDMAWKV 356
Query: 310 IRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVK 350
+ + V +W S + H E+ I+ +M++
Sbjct: 357 FQETG-DKKVFVWSSMIGGLAMHS---FGEKAIELFAKMIE 393
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 8/172 (4%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF +M V D + +L +C L LH +I K G +++T+L+
Sbjct: 284 LELFKEMQVAKVKMDEVIVTTLLSACARLGALDQGRWLHMYIDKHGIKVDAHLSTALIDM 343
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA----SW 115
Y A K+F E ++ W++MI G + +A + F +M + ++
Sbjct: 344 YSKCGRIDMAWKVFQETGDKKVFVWSSMIGGLAMHSFGEKAIELFAKMIECGIEPSEITY 403
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL 167
++AA ++G D GL++F M+ N+ P G ++ LG GLL
Sbjct: 404 INILAACTHSGLVDVGLQIFNRMVENQKPKPRMQHYGCIV---DLLGRAGLL 452
>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 586
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 141/361 (39%), Positives = 211/361 (58%), Gaps = 17/361 (4%)
Query: 43 LKLGFISHVYVATSLLHEYVVTSFGF----ARKLFDELPERNAVTWNTMIKGYSKSGNVC 98
K G ++H V SLL Y S G R L+ + V+WNTM+ GY K G++
Sbjct: 105 FKCGALAHPVVTNSLLKLY--CSLGLLDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLG 162
Query: 99 EARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGC 158
AR+ F RMP RN+ SWSAM+ A + AG + L +F M+ E PD + + +VL C
Sbjct: 163 AAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREE-FRPDVVVLVSVLKAC 221
Query: 159 SHLGSVGLLMGKSAHGFIVKNEW---ELNEQIATILVDMYAKCGFLKYALMVFELMEERN 215
+HLG+V G+ H ++ + N + T LVDMY KCG ++ A VF+ + R+
Sbjct: 222 AHLGAVE--RGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRD 279
Query: 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275
V+ W A+I G A GY E AL LF M G PNE TF VL AC HTG VDEG++ FK
Sbjct: 280 VVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFK 339
Query: 276 MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQF 335
+ ++Y ++P+ +HYGC+ DL G+AG +EEA ++ M +EP+ WG+ +++C+ H
Sbjct: 340 SM-QDYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDI 398
Query: 336 DMAERVIKQALRMVKPEN-DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSV 394
++ ERV K R+++ E DGG + ++ +LY +N +WE A +R++M ++ +K G S
Sbjct: 399 NVGERVGK---RLIELEPYDGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSF 455
Query: 395 I 395
I
Sbjct: 456 I 456
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 98/226 (43%), Gaps = 35/226 (15%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F +M R+ D ++ +LK+C H ++ G H Y+ T
Sbjct: 196 LWVFDRMMREEFRPDVVVLVSVLKACAHLG-----------AVERGRWVHRYLETG---- 240
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
SFG R N + ++ Y K G + +A F+ + R+V W+AMI
Sbjct: 241 ----SFGGRRG--------NLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIG 288
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV--GLLMGKSAHGFIVK 178
G + L+LFR M+ +G P++ T AVL C+H G V G + KS + +K
Sbjct: 289 GLAMNGYGERALELFRRML-QKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQDYGIK 347
Query: 179 NEWELNEQIATILVDMYAKCGFLKYA-LMVFELMEERNVISWTALI 223
+ E L D+ + G ++ A ++ ++ E + W AL+
Sbjct: 348 PQREHY----GCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALM 389
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 138/396 (34%), Positives = 215/396 (54%), Gaps = 36/396 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L M + V + + IL+ CT L +H +I++ G+ ++V
Sbjct: 234 LELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVV------ 287
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
N++I Y K G + EAR F +P R+V +W+AM+
Sbjct: 288 ------------------------NSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVT 323
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y G +D + LFR M +G+ PD+MT +VL+ CS L GK H +V
Sbjct: 324 GYAQLGFHDEAINLFRRM-QQQGIKPDKMTFTSVLTSCS--SPAFLQEGKRIHQQLVHAG 380
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGS-AHRGYSEDALSLF 239
+ L+ + + LV MYAKCG + A +VF M ERNV++WTA+I G A G +AL F
Sbjct: 381 YNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYF 440
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+ M+ G+KP+++TFT VL+AC H GLV+EGRK+F+ + +Y ++P ++HY C VDL G+
Sbjct: 441 DQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGR 500
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG LEEA VI +M P +WG+ L+AC+ H + ER + L++ P++DG +
Sbjct: 501 AGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKL-DPDDDGA-YV 558
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ +Y ++E AE+VR++M ++V K G S I
Sbjct: 559 ALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWI 594
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 143/246 (58%), Gaps = 7/246 (2%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
+++ Y+K G++ +AR F+R+P +NV +W+ +IA Y G D L+L M E +
Sbjct: 187 TSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAE-V 245
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
P+++T ++L GC+ L GK H +I+++ + + L+ MY KCG L+ A
Sbjct: 246 APNKITFASILQGCT--TPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEA 303
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
+F + R+V++WTA++ G A G+ ++A++LF MQ G+KP++MTFT VLT+C
Sbjct: 304 RKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSP 363
Query: 265 GLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWG 323
+ EG++ + +++ Y+L+ +Q +V ++ K G +++A V M E NV+ W
Sbjct: 364 AFLQEGKRIHQQLVHAGYNLDVYLQ--SALVSMYAKCGSMDDASLVFNQMS-ERNVVAWT 420
Query: 324 SFLAAC 329
+ + C
Sbjct: 421 AIITGC 426
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 99/349 (28%), Positives = 167/349 (47%), Gaps = 50/349 (14%)
Query: 12 VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARK 71
V SD F L L+ C +L +H+ ILK G + Y+
Sbjct: 45 VYSDVFRGL--LQECARLRSLEQGREVHAAILKSGIQPNRYLE----------------- 85
Query: 72 LFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPG 131
NT++ Y+K G++ +AR F+ + RN+ SW+AMI A++ A +
Sbjct: 86 -------------NTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFV---AGNKN 129
Query: 132 LKLFR--EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIAT 189
L+ F+ E + G PD++T ++L+ ++ L +G+ H IV+ EL ++ T
Sbjct: 130 LEAFKCYETMKLAGCKPDKVTFVSLLNAFTN--PELLQLGQKVHMEIVEAGLELEPRVGT 187
Query: 190 ILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP 249
LV MYAKCG + A ++F+ + E+NV++WT LI G A +G + AL L E MQ V P
Sbjct: 188 SLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAP 247
Query: 250 NEMTFTGVLTACVHTGLVDEGRKYFK-MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
N++TF +L C ++ G+K + +I Y E + ++ ++ K G LEEA +
Sbjct: 248 NKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWV--VNSLITMYCKCGGLEEARK 305
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM----VKPEN 353
+ + +V+ W + + + Q + I RM +KP+
Sbjct: 306 LFSDLP-HRDVVTWTAMVTG---YAQLGFHDEAINLFRRMQQQGIKPDK 350
>gi|356499342|ref|XP_003518500.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g29230-like [Glycine max]
Length = 446
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 123/328 (37%), Positives = 204/328 (62%), Gaps = 4/328 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR+LFD +P+ + ++WNT++ GY+ +G V FE MP RNV SW+ +I Y+ G +
Sbjct: 75 ARELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFEEMPARNVYSWNGLIGGYVRNGLF 134
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L+ F+ M+ + + P+ T+ AVLS CS LG L +GK H + ++ N +
Sbjct: 135 KEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGD--LEIGKWVHVYADSIGYKGNLFVG 192
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+DMYAKCG ++ AL VF+ ++ +++I+W +I A ++ DALSLFE M+ G +
Sbjct: 193 NALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINSLAMHXHAADALSLFEGMKRAGER 252
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+ +TF G+L+AC H GLV G +F+ + ++Y + P+I+HYGCMVDL G+AG + +A +
Sbjct: 253 PDGVTFVGILSACTHMGLVRNGFLHFQSMVDDYLIVPQIEHYGCMVDLLGRAGLINQAVD 312
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
++R M +EP+V+IW + L AC+ +K +MAE +++ + + +P N G F ++ ++Y
Sbjct: 313 IVRKMPMEPDVVIWAALLGACRXYKNVEMAELALQRLIEL-EPNNPGN-FVMLSNIYKDL 370
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVIS 396
+ + R++ M + RK G SVI
Sbjct: 371 GRSQDVARLKVAMRDTGFRKVPGCSVIG 398
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 114/265 (43%), Gaps = 45/265 (16%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A K+F E+ ++N W ++ + ++ AR F+ P +V W+ +++ Y+ G
Sbjct: 13 AYKVFAEMRDKNVFAWTAVVAAHVACHDMVSARRLFDLAPQCDVVLWNVIVSGYIELGDM 72
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+LF M D M+ VLSG ++ G V L
Sbjct: 73 VAARELFDRMPD-----CDVMSWNTVLSGYANNGEVEL---------------------- 105
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG-V 247
F+K VFE M RNV SW LI G G ++AL F+ M G V
Sbjct: 106 -----------FVK----VFEEMPARNVYSWNGLIGGYVRNGLFKEALECFKRMLVDGVV 150
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
PN+ T VL+AC G ++ G K+ + + + + ++D++ K G +E+A
Sbjct: 151 VPNDYTVVAVLSACSRLGDLEIG-KWVHVYADSIGYKGNLFVGNALIDMYAKCGVIEKAL 209
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEH 332
+V + ++ ++I W + + + H
Sbjct: 210 DVFDGLDVK-DIITWNTIINSLAMH 233
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 106/245 (43%), Gaps = 46/245 (18%)
Query: 12 VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS-FGFAR 70
VP+D ++++ +L +C+ +L + +H + +G+ +++V +L+ Y A
Sbjct: 151 VPND-YTVVAVLSACSRLGDLEIGKWVHVYADSIGYKGNLFVGNALIDMYAKCGVIEKAL 209
Query: 71 KLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDP 130
+FD L ++ +TWNT+I + + +A FE M
Sbjct: 210 DVFDGLDVKDIITWNTIINSLAMHXHAADALSLFEGM----------------------- 246
Query: 131 GLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV--GLLMGKSAHGFIVKNEWELNEQIA 188
G PD +T +LS C+H+G V G L +S + +++ + QI
Sbjct: 247 ---------KRAGERPDGVTFVGILSACTHMGLVRNGFLHFQS-----MVDDYLIVPQIE 292
Query: 189 --TILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
+VD+ + G + A+ + M E +V+ W AL+ A R Y ++ + +
Sbjct: 293 HYGCMVDLLGRAGLINQAVDIVRKMPMEPDVVIWAALL--GACRXYKNVEMAELALQRLI 350
Query: 246 GVKPN 250
++PN
Sbjct: 351 ELEPN 355
>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 697
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 140/401 (34%), Positives = 215/401 (53%), Gaps = 9/401 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFI-SHVYVATSLLH 59
+ +F M V D ++ ++ +C + + V +H ++K + + + ++ + +
Sbjct: 238 LDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVD 297
Query: 60 EYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y S AR +FD +P RN + +MI GY+ + + AR F +M RNV SW+A+
Sbjct: 298 MYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNAL 357
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH----G 174
IA Y G + L LF ++ E + P + +L C+ L + L M H G
Sbjct: 358 IAGYTQNGENEEALSLFC-LLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHG 416
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
F ++ E + + L+DMY KCG ++ +VF M ER+ +SW A+I G A GY +
Sbjct: 417 FKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNE 476
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
AL LF M +G KP+ +T GVL+AC H G V+EGR YF + ++ + P HY CMV
Sbjct: 477 ALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMV 536
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
DL G+AGFLEEA +I M ++P+ +IWGS LAACK H+ + + V ++ L V+P N
Sbjct: 537 DLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLE-VEPSN- 594
Query: 355 GGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G + L+ ++Y KWE VRK M + V K G S I
Sbjct: 595 SGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWI 635
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 168/318 (52%), Gaps = 8/318 (2%)
Query: 14 SDSFSILHILKSCTHFNNLTVIH--HLHSHILKLGFISHVYVATSLLHEYV-VTSFGFAR 70
+DS +L SC + L+ I+ ++H+ ++K GF + +++ L+ Y S R
Sbjct: 17 TDSSPFAKLLDSCIK-SKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGR 75
Query: 71 KLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDP 130
++FD++P+RN TWN+++ G +K G + EA F MP R+ +W++M++ + +
Sbjct: 76 QVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEE 135
Query: 131 GLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATI 190
L F M+ EG ++ + +VLS CS L + G H I K+ + + I +
Sbjct: 136 ALCYF-AMMHKEGFVLNEYSFASVLSACSGLNDMN--KGVQVHSLIAKSPFLSDVYIGSA 192
Query: 191 LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250
LVDMY+KCG + A VF+ M +RNV+SW +LI G + +AL +F+MM + V+P+
Sbjct: 193 LVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPD 252
Query: 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI 310
E+T V++AC + G++ + + L I VD++ K ++EA +
Sbjct: 253 EVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIF 312
Query: 311 RTMRLEPNVIIWGSFLAA 328
+M + NVI S ++
Sbjct: 313 DSMPIR-NVIAETSMISG 329
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 101/364 (27%), Positives = 170/364 (46%), Gaps = 79/364 (21%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV- 62
F+ MH++ + +S +L +C+ N++ +HS I K F+S VY+ ++L+ Y
Sbjct: 140 FAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSK 199
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
+ A+++FDE+ +RN V+WN++I + ++G EA D F
Sbjct: 200 CGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVF------------------ 241
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+M+ + PD++T+ +V+S C+ L ++ + G+ HG +VKN+
Sbjct: 242 --------------QMMLESRVEPDEVTLASVISACASLSAIKV--GQEVHGRVVKNDKL 285
Query: 183 LNEQI-ATILVDMYAKCGFLKYALMVFELME----------------------------- 212
N+ I + VDMYAKC +K A +F+ M
Sbjct: 286 RNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTK 345
Query: 213 --ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC-----VHTG 265
ERNV+SW ALI G G +E+ALSLF +++ V P +F +L AC +H G
Sbjct: 346 MAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLG 405
Query: 266 L---VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
+ V + FK E D I ++D++ K G +EE Y V R M +E + + W
Sbjct: 406 MQAHVHVLKHGFKFQSGEED---DIFVGNSLIDMYVKCGCVEEGYLVFRKM-MERDCVSW 461
Query: 323 GSFL 326
+ +
Sbjct: 462 NAMI 465
>gi|356567012|ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g44880-like [Glycine max]
Length = 599
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 134/329 (40%), Positives = 201/329 (61%), Gaps = 6/329 (1%)
Query: 67 GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAG 126
G AR+LF+E+ ERN V+W +M+ GY +G+V A+ F+ MP +NV +W+AMI Y
Sbjct: 239 GLARELFNEMRERNVVSWTSMVSGYCGNGDVENAKLMFDLMPEKNVFTWNAMIGGYCQNR 298
Query: 127 AYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ 186
L+LFREM + P+++T+ VL + LG++ L G+ H F ++ + + + +
Sbjct: 299 RSHDALELFREM-QTASVEPNEVTVVCVLPAVADLGALDL--GRWIHRFALRKKLDRSAR 355
Query: 187 IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
I T L+DMYAKCG + A + FE M ER SW ALI G A G +++AL +F M G
Sbjct: 356 IGTALIDMYAKCGEITKAKLAFEGMTERETASWNALINGFAVNGCAKEALEVFARMIEEG 415
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
PNE+T GVL+AC H GLV+EGR++F + E + + P+++HYGCMVDL G+AG L+EA
Sbjct: 416 FGPNEVTMIGVLSACNHCGLVEEGRRWFNAM-ERFGIAPQVEHYGCMVDLLGRAGCLDEA 474
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366
+I+TM + N II SFL AC AERV+K+ ++M E+ G + ++ +LY
Sbjct: 475 ENLIQTMPYDANGIILSSFLFACGYFNDVLRAERVLKEVVKM--DEDVAGNYVMLRNLYA 532
Query: 367 MNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++W E V+++M + K SVI
Sbjct: 533 TRQRWTDVEDVKQMMKKRGTSKEVACSVI 561
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 96/362 (26%), Positives = 153/362 (42%), Gaps = 42/362 (11%)
Query: 5 SQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT 64
SQ R + + LHIL+ T ++ + +H+ IL+ S++ +LL +V T
Sbjct: 5 SQPQRTLWSNAERTCLHILQCRT--KSIPTLLQIHAFILRHSLHSNL----NLLTAFVTT 58
Query: 65 SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLN 124
A L N AR FF R+ ++MIAA+
Sbjct: 59 CASLAASAKRPLAIIN------------------HARRFFNATHTRDTFLCNSMIAAHFA 100
Query: 125 AGAYDPGLKLFREMISN-EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWEL 183
A + LFR++ TPD T A++ GC+ + G G HG ++KN
Sbjct: 101 ARQFSQPFTLFRDLRRQAPPFTPDGYTFTALVKGCATRVATG--EGTLLHGMVLKNGVCF 158
Query: 184 NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQ 243
+ +AT LVDMY K G L A VF+ M R+ +SWTA+I G A G +A LF+ M+
Sbjct: 159 DLYVATALVDMYVKFGVLGSARKVFDEMSVRSKVSWTAVIVGYARCGDMSEARRLFDEME 218
Query: 244 ATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFL 303
+ + F ++ V G V R+ F + E + + MV + G +
Sbjct: 219 DRDI----VAFNAMIDGYVKMGCVGLARELFNEMRER-----NVVSWTSMVSGYCGNGDV 269
Query: 304 EEAYEVIRTMRLEPNVIIWGSFLAA-CKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362
E A +++ + E NV W + + C+ + D E + V+P T++C
Sbjct: 270 ENA-KLMFDLMPEKNVFTWNAMIGGYCQNRRSHDALELFREMQTASVEPNE----VTVVC 324
Query: 363 DL 364
L
Sbjct: 325 VL 326
>gi|357131531|ref|XP_003567390.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Brachypodium distachyon]
Length = 531
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 128/328 (39%), Positives = 202/328 (61%), Gaps = 5/328 (1%)
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
F AR +FDE+P R++ +W+ +I GY K G++ AR+ F++MP +N+ +W+AMI Y
Sbjct: 195 FASARLVFDEMPTRDSSSWSVLIVGYCKRGSMQSARELFDKMPGKNLVTWTAMINGYAQC 254
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
G + LFRE+ G+ PD T+ V+S S +GS L ++ + E NE
Sbjct: 255 GRPKESISLFREL-EAVGIEPDAATMVGVISSASQIGSTAL--AGWVGNYVDRKRIERNE 311
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
++ T LVDM+AKCG ++ AL F +E+ + +TALI G A G+S AL +FE M+A
Sbjct: 312 KVLTALVDMHAKCGNVEQALNCFREIEQPDAYPYTALISGLATHGHSTLALQVFERMRAQ 371
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305
V+P+ +TF GVLTAC H GLVD G Y++ + ++Y ++ R HY C+VD+ G+AG + E
Sbjct: 372 AVRPDPITFVGVLTACSHAGLVDMGLDYWEAMVQDYGMDRRADHYACVVDMLGRAGRIVE 431
Query: 306 AYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365
A+++++TM + P+ G+ L+ACK H ++AE ++ L ++P N G + L+ ++Y
Sbjct: 432 AFDMVQTMPMGPHPGALGALLSACKTHDNVEIAE-IVANKLFELEPRNTGN-YILLSNIY 489
Query: 366 TMNEKWEGAERVRKLMLNQNVRKARGSS 393
E+WE AER+R LM + K GS+
Sbjct: 490 AGKEQWEEAERIRSLMRTKLPFKQPGST 517
>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
Length = 629
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 142/387 (36%), Positives = 225/387 (58%), Gaps = 8/387 (2%)
Query: 12 VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT-SFGFAR 70
V + F+ +LK+C + LH ++KLG +S +V ++L+ YV+ + A
Sbjct: 119 VEPNKFTFPCVLKACAKLARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAH 178
Query: 71 KLFDELP-ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYD 129
LF + E N V WN MI GY + G++ +R+ F+ MP ++V SW+ MI+ G +
Sbjct: 179 VLFYQTRLEGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFK 238
Query: 130 PGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIAT 189
+++F +M + + P+ +T+ +VL S LG++ L GK H F KNE E+++ + +
Sbjct: 239 EAIEMFHDMQLGD-VPPNYVTLVSVLPAVSRLGAIEL--GKWVHLFAEKNEIEIDDVLGS 295
Query: 190 ILVDMYAKCGFLKYALMVFE-LMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+DMY+KCG + A+ VFE + ++N I+W+A+I G A G + DAL F MQ GV
Sbjct: 296 ALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVT 355
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+++ + GVL+AC H GLV+EGR + + L PRI+HYGCMVDL G+AG LEEA +
Sbjct: 356 PSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQ 415
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+I M ++P+ +I + L ACK H +M ER+ K + M +D G + + +++
Sbjct: 416 LILNMPVKPDDVILKALLGACKMHGNIEMGERIAK--ILMGWYPHDSGSYVALSNMFASE 473
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
WEG +VR M ++RK G S I
Sbjct: 474 GNWEGVVKVRLKMKELDIRKDPGCSWI 500
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/333 (23%), Positives = 144/333 (43%), Gaps = 62/333 (18%)
Query: 35 IHHLHSHILKLGFISHVYVATSLLHEYVVTS---FGFARKLFDELPERNAVTWNTMIKGY 91
+ +H+H +K G I H A LL +++ +ARK F ++ N +WNT+I+
Sbjct: 31 LKQIHAHFIKTGQIHHPLAAAELLKFLTLSTQREIKYARKFFSQIHHPNCFSWNTIIRAL 90
Query: 92 SKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTI 151
+ S + L +V S A++ F M+++ + P++ T
Sbjct: 91 ADS----------DDDDLFHVNSLEALL--------------YFSHMLTDGLVEPNKFTF 126
Query: 152 GAVLSGCSHLGSVGLLMGKSAHGFIVK--------------------------------N 179
VL C+ L + GK HGF+VK
Sbjct: 127 PCVLKACAKLARIE--EGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQT 184
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
E N + +++D Y + G L+ + +F+ M ++V+SW +I G A G+ ++A+ +F
Sbjct: 185 RLEGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMF 244
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MQ V PN +T VL A G ++ G K+ + E+ ++E ++D++ K
Sbjct: 245 HDMQLGDVPPNYVTLVSVLPAVSRLGAIELG-KWVHLFAEKNEIEIDDVLGSALIDMYSK 303
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
G +++A +V +R + N I W + + H
Sbjct: 304 CGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMH 336
>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 697
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 137/401 (34%), Positives = 217/401 (54%), Gaps = 9/401 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFI-SHVYVATSLLH 59
+++F M V D ++ ++ +C + + V +H+ ++K+ + + + ++ + +
Sbjct: 238 LKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVD 297
Query: 60 EYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y S AR +FD +P RN + +M+ GY+ + + AR F +M RNV SW+A+
Sbjct: 298 MYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNAL 357
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH----G 174
IA Y G + L LF ++ E + P T +L C+ L + L M H G
Sbjct: 358 IAGYTQNGENEEALSLFC-LLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHG 416
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
F ++ E + + L+DMY KCG ++ +VF M ER+ +SW A+I G A GY +
Sbjct: 417 FKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNE 476
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
AL LF M +G KP+ +T GVL+AC H G V+EGR YF + ++ + P HY CMV
Sbjct: 477 ALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMV 536
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
DL G+AGFLEEA +I M ++P+ +IWGS LAACK H+ + + V ++ + ++
Sbjct: 537 DLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAACKVHRNITLGKYVAEKLFEV--ETSN 594
Query: 355 GGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G + L+ ++Y KW A VRKLM + V K G S I
Sbjct: 595 SGPYVLLSNMYAELGKWGDAMNVRKLMRKEGVTKQPGCSWI 635
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 159/309 (51%), Gaps = 6/309 (1%)
Query: 22 ILKSCTHFNNLTV-IHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFDELPER 79
+L SC + + +H+ ++K GF + V++ L+ Y S R+LFD++P+R
Sbjct: 25 LLDSCIKLKLSAIDVRCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQR 84
Query: 80 NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI 139
N TWN+++ G +K G + EA F MP R+ +W++M++ + + L F M+
Sbjct: 85 NVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYF-AMM 143
Query: 140 SNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG 199
EG ++ T + LS CS L + G H I K+ + I + LVDMY+KCG
Sbjct: 144 HKEGFVLNEYTFASGLSACSGLNDMN--RGVQIHSLIAKSPCLSDVYIGSALVDMYSKCG 201
Query: 200 FLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLT 259
+ A VF+ M +RNV+SW +LI G + +AL +F++M + V+P+E+T V++
Sbjct: 202 NVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVIS 261
Query: 260 ACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNV 319
AC + G++ + + L I VD++ K ++EA + +M + NV
Sbjct: 262 ACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIR-NV 320
Query: 320 IIWGSFLAA 328
I S ++
Sbjct: 321 IAETSMVSG 329
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/364 (27%), Positives = 167/364 (45%), Gaps = 79/364 (21%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV- 62
F+ MH++ + ++ L +C+ N++ +HS I K +S VY+ ++L+ Y
Sbjct: 140 FAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSK 199
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
+ A+++FDE+ +RN V+WN++I Y ++G EA F+ M + SW
Sbjct: 200 CGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVM----LESW------- 248
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+ PD++T+ +V+S C+ L ++ + G+ H +VK +
Sbjct: 249 ---------------------VEPDEVTLASVISACASLSAIKV--GQEVHARVVKMDKL 285
Query: 183 LNEQI-ATILVDMYAKCGFLKYALMVFELME----------------------------- 212
N+ I + VDMYAKC +K A +F+ M
Sbjct: 286 RNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTK 345
Query: 213 --ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC-----VHTG 265
ERNV+SW ALI G G +E+ALSLF +++ V P TF +L AC +H G
Sbjct: 346 MAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLG 405
Query: 266 L---VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
+ V + FK E D I ++D++ K G +EE Y V R M +E + + W
Sbjct: 406 MQAHVHVLKHGFKFQSGEED---DIFVGNSLIDMYVKCGCVEEGYLVFRKM-MERDCVSW 461
Query: 323 GSFL 326
+ +
Sbjct: 462 NAMI 465
>gi|347954512|gb|AEP33756.1| chloroplast biogenesis 19, partial [Raphanus sativus]
Length = 476
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 141/396 (35%), Positives = 230/396 (58%), Gaps = 29/396 (7%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFI-SHVYVATSLLHEYV 62
+ M V + +++ +L C+ L LH + KLGF +HV V T++L Y
Sbjct: 57 LTAMRLAGVEPNHITLIALLSGCSDCEPLG--DSLHGYACKLGFDRNHVMVGTAILGMYS 114
Query: 63 VTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
F AR +FD + + N+VTWNTMI GY R++ S + MI
Sbjct: 115 KRRRFRKARLVFDRMGDXNSVTWNTMIDGYX-----------------RDLISXTXMING 157
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
++ G + L FREM G+ PD + I A L+ C++LG+ L G H ++V ++
Sbjct: 158 FVKKGLNEEALAWFREM-QVSGVEPDYVAIIAALAACTNLGA--LSFGLWVHRYVVSQDF 214
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ N +++ L+D+Y +CG +++A VF+ ME+R V+SW ++I G A G++ ++L F
Sbjct: 215 KNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGHAHESLVYFRK 274
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
MQ KP+ +TFTG LTAC H GLV+EG +YF+ + +Y + PRI+HYGC+VDL+ +AG
Sbjct: 275 MQEERFKPDAVTFTGALTACSHVGLVEEGVRYFEAMKRDYRISPRIEHYGCLVDLYSRAG 334
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEH-KQFDMAERVIKQALRM-VKPENDGGVFT 359
LE+A +V+ +M ++PN ++ GS LAAC+ H ++AER++K + VK ++ +
Sbjct: 335 RLEDALKVVESMPMKPNEVVIGSLLAACRTHGNDTELAERMMKHLSELKVKSHSN---YV 391
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++ ++Y + KWEGA ++R+ M ++K G S I
Sbjct: 392 ILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSI 427
>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 828
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 135/394 (34%), Positives = 227/394 (57%), Gaps = 6/394 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+ +M ++ D ++L + +C +L+V H+++ + G ++ +++ Y+
Sbjct: 311 VLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYM 370
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
A K+FD + + VTWN++I G + G + A F MP N+ SW+ MI A
Sbjct: 371 KCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGA 430
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
+ A ++ + L REM N+G+ D++T+ + S C +LG++ L K + +I KN+
Sbjct: 431 MVQASMFEEAIDLLREM-QNQGIKGDRVTMVGIASACGYLGALDL--AKWIYTYIEKNDI 487
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
++ Q+ T LVDM+++CG A+ VFE ME+R+V +WTA I A G ++ A+ LF+
Sbjct: 488 HIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDE 547
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M VK ++ F +LTA H G VD+GR+ F +++ + + P+I HYGCMVDL G+AG
Sbjct: 548 MLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAG 607
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
LEEA++++++M ++PN +IWGSFLAAC++HK + A + + + PE G+ L+
Sbjct: 608 LLEEAFDLMKSMPIKPNDVIWGSFLAACRKHKNVEFANYA-DEKITQLAPEK-VGIHVLL 665
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y KW RVR M + +K GSS I
Sbjct: 666 SNIYASAGKWNDVARVRLQMKEKGFQKVAGSSSI 699
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/383 (21%), Positives = 162/383 (42%), Gaps = 41/383 (10%)
Query: 12 VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARK 71
VP D+F+ +L +C+ + +H ++K+G + ++VA SL+H
Sbjct: 119 VP-DNFTFPFLLSACSKIMAFSEGVQVHGVVVKMGLVKDLFVANSLIH------------ 165
Query: 72 LFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPG 131
Y+ G V R F+ M RNV SW+++I Y
Sbjct: 166 ------------------FYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEA 207
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
+ LF EM+ G+ P+ +T+ +S C+ L L +GK + + + N + L
Sbjct: 208 VCLFFEMVE-VGVEPNPVTMVCAISACAKLKD--LELGKKVCNLMTELGVKSNTLVVNAL 264
Query: 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE 251
+DMY KCG + +F+ ++N++ + ++ G + + L + + M G +P++
Sbjct: 265 LDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDK 324
Query: 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR 311
+T + AC G + G+ + LE ++D++ K G E A +V
Sbjct: 325 VTMLSTIAACAQLGDLSVGKSSHAYVFRN-GLERLDNISNAIIDMYMKCGKREAACKVFD 383
Query: 312 TMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKW 371
+M V+ W S +A + ++A R+ + PE++ + + +
Sbjct: 384 SMS-NKTVVTWNSLIAGLVRDGELELALRIFGEM-----PESNLVSWNTMIGAMVQASMF 437
Query: 372 EGAERVRKLMLNQNVRKARGSSV 394
E A + + M NQ ++ R + V
Sbjct: 438 EEAIDLLREMQNQGIKGDRVTMV 460
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 139/312 (44%), Gaps = 40/312 (12%)
Query: 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLF--DELPERN 80
L++C L + LH ++LK G + + + + S +A F DE + +
Sbjct: 29 LQTC---KTLIELKQLHCNMLKKGVFNINKLIAACVQMGTHESLNYALNAFKEDEGTKCS 85
Query: 81 AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMIS 140
T NT+I+GY+ SG +C+ F ++ MI
Sbjct: 86 LYTCNTLIRGYAASG-LCKEAIF------------------------------IYLHMII 114
Query: 141 NEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGF 200
G+ PD T +LS CS + + G HG +VK + +A L+ YA CG
Sbjct: 115 VMGIVPDNFTFPFLLSACSKI--MAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAACGK 172
Query: 201 LKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260
+ VF+ M ERNV+SWT+LI G + +++A+ LF M GV+PN +T ++A
Sbjct: 173 VDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISA 232
Query: 261 CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVI 320
C ++ G+K ++ E ++ ++D++ K G + E+ + N++
Sbjct: 233 CAKLKDLELGKKVCNLM-TELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFS-DKNLV 290
Query: 321 IWGSFLAACKEH 332
++ + ++ +H
Sbjct: 291 MYNTIMSNYVQH 302
>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
Length = 560
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 139/409 (33%), Positives = 224/409 (54%), Gaps = 18/409 (4%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF +M R D F+ ++K+C+ + H ++ G V+V TSL+
Sbjct: 156 VSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDL 215
Query: 61 Y-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y ARK+FDE+ ERN V+W MI GY+ ++ EAR F+ MP +N SW+A+I
Sbjct: 216 YGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAII 275
Query: 120 AAYLNAGAYDPGLKLFREM------------ISNEGLTPDQMTIGAVLSGCSHLGSVGLL 167
+ Y+ G K+F EM + + + PD+ + +++S CS +GS L
Sbjct: 276 SGYVKCGDLRSARKMFDEMPHRNRDVVAWSALISGNVKPDEFIMVSLMSACSQMGS--LE 333
Query: 168 MGKSAHGFIVKNEWELNE-QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGS 226
+ K ++ K+ +++ + L+DM AKCG + A +FE M +R++IS+ +++ G
Sbjct: 334 LAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGL 393
Query: 227 AHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR 286
+ G A+SLF M G+ P+++ FT +LTAC GLVDEG YF+ + +Y + P
Sbjct: 394 SIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPS 453
Query: 287 IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQAL 346
HY CMVDL G+AG L+EAYE++++M +EP+ WG+ L ACK H ++ E V Q
Sbjct: 454 PDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDIELGEVVADQLF 513
Query: 347 RMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ +P+N G + L+ ++Y E+W +R M + +RK G S I
Sbjct: 514 EL-EPQNAGN-YVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCSWI 560
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 88/365 (24%), Positives = 154/365 (42%), Gaps = 67/365 (18%)
Query: 18 SILHILKSCTHFNNLTVIHHLHSHILKLGF-ISHVYVATSLLHEYVVTSFGFARKLFDEL 76
SI +LK+CT + + +H+ I++ G H ++ L +++F + +F+ +
Sbjct: 75 SISTLLKACT---TTSTLEQVHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVFNGV 131
Query: 77 PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFR 136
+ V WNT IKGYS++ +V F RM +
Sbjct: 132 SSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDA------------------------ 167
Query: 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA 196
PD+ T +++ CS + G+ G + HG V+ + + T L+D+Y
Sbjct: 168 --------VPDKFTYPSLIKACSKV--CGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYG 217
Query: 197 KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTG 256
KCG + A VF+ M ERNV+SWTA+I G A +A LF+ M + N +++
Sbjct: 218 KCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMP----EKNAVSWNA 273
Query: 257 VLTACVHTGLVDEGRKYF-KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRL 315
+++ V G + RK F +M D+ A+ + + +
Sbjct: 274 IISGYVKCGDLRSARKMFDEMPHRNRDV---------------------VAWSALISGNV 312
Query: 316 EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAE 375
+P+ I S ++AC + ++A + + +R K D +I L MN K +
Sbjct: 313 KPDEFIMVSLMSACSQMGSLELA-KWVDDYVR--KSSIDVHRAHVIAALIDMNAKCGSMD 369
Query: 376 RVRKL 380
R KL
Sbjct: 370 RATKL 374
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 51/252 (20%), Positives = 97/252 (38%), Gaps = 22/252 (8%)
Query: 150 TIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFE 209
+I +L C+ ++ + H I++ + I + + + Y VF
Sbjct: 75 SISTLLKACTTTSTL-----EQVHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVFN 129
Query: 210 LMEERNVISWTALICGSAHRGYSED-----ALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
+ + + W I +GYSE+ +SLF M+ + P++ T+ ++ AC
Sbjct: 130 GVSSPSTVLWNTYI-----KGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKV 184
Query: 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324
V EG F + + ++DL+GK G + A +V M E NV+ W +
Sbjct: 185 CGVKEGVA-FHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMG-ERNVVSWTA 242
Query: 325 FLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384
+A A ++ + PE + + I Y A ++ M ++
Sbjct: 243 MIAGYASFSDLVEARKLFDEM-----PEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHR 297
Query: 385 NVRKARGSSVIS 396
N S++IS
Sbjct: 298 NRDVVAWSALIS 309
>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 136/392 (34%), Positives = 215/392 (54%), Gaps = 35/392 (8%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV 63
F ++ + DSFS++ +L +C + T + +I G +V+VATSLL YV
Sbjct: 203 FKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYV- 261
Query: 64 TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL 123
K GN+ A F MP +++ SWS MI Y
Sbjct: 262 -----------------------------KCGNLERANLIFSAMPEKDIVSWSTMIQGYA 292
Query: 124 NAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWEL 183
G L LF +M S E L PD T+ VLS C+ LG++ L G A + +NE+
Sbjct: 293 FNGLPQQALDLFFQMQS-ENLKPDCYTMVGVLSACATLGALDL--GIWASSLMDRNEFLS 349
Query: 184 NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQ 243
N + T L+DMY+KCG + A +F M++++ + W A++ G + G+++ SLF +++
Sbjct: 350 NPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVE 409
Query: 244 ATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFL 303
G++P+E TF G+L C H G V+EGR++F + + L P I+HYGCMVDL G+AG L
Sbjct: 410 KHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLL 469
Query: 304 EEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICD 363
EA+++I M ++PN ++WG+ L CK HK +AE+V+K+ + + +P N G + + +
Sbjct: 470 NEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIEL-EPWNSGN-YVQLSN 527
Query: 364 LYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+Y+ N +WE AE++R M Q ++K R S I
Sbjct: 528 IYSGNHRWEEAEKIRSTMKEQQIQKIRACSWI 559
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 112/239 (46%), Gaps = 14/239 (5%)
Query: 97 VCEARDF---------FERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD 147
+C A DF F ++ N+ W+ MI ++ +D + L+ M G P+
Sbjct: 55 LCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSM-RGGGFLPN 113
Query: 148 QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMV 207
TI VL C+ + + +G H +VK ++ + + T L+ +Y KC AL V
Sbjct: 114 NFTIPFVLKACAR--KLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKV 171
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
F+ + ++NV+SWTA+I G G+ +A+ F+ + G+KP+ + VL AC G
Sbjct: 172 FDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDC 231
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
G + I + + + ++D++ K G LE A + M E +++ W + +
Sbjct: 232 TSGEWIDRYISDS-GMGRNVFVATSLLDMYVKCGNLERANLIFSAMP-EKDIVSWSTMI 288
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 5/157 (3%)
Query: 199 GFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL 258
G Y+ +VF ++E N+ W +I G + +DA+ L+ M+ G PN T VL
Sbjct: 62 GSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVL 121
Query: 259 TACVHTGLVDEGRKYFK-MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEP 317
AC V G K ++ YD + ++ ++ L+ K ++A +V + +
Sbjct: 122 KACARKLDVRLGLKIHSLLVKAGYDHDVFVK--TSLLSLYVKCDNFDDALKVFDDIP-DK 178
Query: 318 NVIIWGSFLAACKEHKQFDMAERVIKQALRM-VKPEN 353
NV+ W + + F A K+ L M +KP++
Sbjct: 179 NVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDS 215
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 92/231 (39%), Gaps = 43/231 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF QM +++ D ++++ +L +C L + S + + F+S+ + T+L+
Sbjct: 301 LDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDM 360
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y S A ++F + +++ V WN M+ G S +G+ F
Sbjct: 361 YSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLF--------------- 405
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI--V 177
++ G+ PD+ T +L GC+H G V F +
Sbjct: 406 -----------------SLVEKHGIRPDENTFIGLLCGCTHGGFV-----NEGRQFFNNM 443
Query: 178 KNEWELNEQIA--TILVDMYAKCGFLKYALMVFELMEER-NVISWTALICG 225
K + L I +VD+ + G L A + M + N + W AL+ G
Sbjct: 444 KRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGG 494
>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 605
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 148/454 (32%), Positives = 232/454 (51%), Gaps = 68/454 (14%)
Query: 6 QMHRQSVPSDSFSILHILKSCTHFNN-LTVIHHLHSHILKLGFISHVYVATSLLHEY--- 61
+MH V +D+F+ +LK C ++ L+++ +H+H+ KLGF ++V SL+ Y
Sbjct: 113 KMHVDGVLADNFTYPFLLKGCNGSSSWLSLVKMVHAHVEKLGFYWDIFVPNSLIDCYCRC 172
Query: 62 -----------------VVT------------SFGFARKLFDELPERNAVTWNTMIKGYS 92
VV+ A K+FDE+PER+ V+WNTM+ G++
Sbjct: 173 GDVEMAMKVFSGMEERDVVSWNSMVGGLVKNGDLDGALKVFDEMPERDRVSWNTMLDGFT 232
Query: 93 KSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFR---------------- 136
K+G + +A FERM R++ SWS M+ Y G D LF
Sbjct: 233 KAGEMDKAFKLFERMAERDIVSWSTMVCGYSKNGDMDMARMLFDRCPVKNLVLWTTIISG 292
Query: 137 --------------EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+ + GL D ++L+ C+ G +GL GK H +++ +
Sbjct: 293 YAEKGQVKEAMNLCDEMEKSGLRLDDGFFISILAACAESGMLGL--GKKMHDSFLRSRFR 350
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSEDALSLFEM 241
+ ++ +DMYAKCG + A VF M+ E++++SW ++I G G+ E ++ LF
Sbjct: 351 CSTKVLNSFIDMYAKCGCVDDAFRVFNGMKTEKDLVSWNSMIHGFGIHGHGEKSIELFNT 410
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M G KP+ TF G+L AC H GLV+EGR YF + Y + P+I+HYGCMVDL G+ G
Sbjct: 411 MVREGFKPDRYTFIGLLCACTHAGLVNEGRGYFYSMQRVYGIVPQIEHYGCMVDLLGRGG 470
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L+EA+ ++R+M EPN II G+ L AC+ H +A V K ++V +D G F+L+
Sbjct: 471 HLKEAFWLVRSMPFEPNAIILGTLLGACRMHNDVKLATSVSKYLFKLVP--SDPGNFSLL 528
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y + W +VRK M ++ +K G S I
Sbjct: 529 SNIYAQSGDWINVAKVRKQMNDEGGQKPSGVSSI 562
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/344 (22%), Positives = 154/344 (44%), Gaps = 53/344 (15%)
Query: 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS-FGFARKLFDELPERNA 81
L CT+ N+ I +H+ ++K Y+A L+ Y +T+ A +F+++P+ N
Sbjct: 29 LHKCTNPNH---IKQIHAQLIKCHLHQDPYIAPKLIASYSLTNNLSSAVNVFNQVPDPNV 85
Query: 82 VTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISN 141
+N +I+ YS SGN + + ++ ++ ++
Sbjct: 86 HLYNYLIRAYSLSGNESNS-----------LCAFGVLLKMHV------------------ 116
Query: 142 EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFL 201
+G+ D T +L GC+ S L + K H + K + + + L+D Y +CG +
Sbjct: 117 DGVLADNFTYPFLLKGCNG-SSSWLSLVKMVHAHVEKLGFYWDIFVPNSLIDCYCRCGDV 175
Query: 202 KYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261
+ A+ VF MEER+V+SW +++ G G + AL +F+ M + + +++ +L
Sbjct: 176 EMAMKVFSGMEERDVVSWNSMVGGLVKNGDLDGALKVFDEMP----ERDRVSWNTMLDGF 231
Query: 262 VHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVII 321
G +D+ K F+ + E I + MV + K G ++ A + ++ N+++
Sbjct: 232 TKAGEMDKAFKLFERMAER-----DIVSWSTMVCGYSKNGDMDMARMLFDRCPVK-NLVL 285
Query: 322 WGSFLAACKEHKQ----FDMAERVIKQALRMVKPENDGGVFTLI 361
W + ++ E Q ++ + + K LR+ D G F I
Sbjct: 286 WTTIISGYAEKGQVKEAMNLCDEMEKSGLRL-----DDGFFISI 324
>gi|125574942|gb|EAZ16226.1| hypothetical protein OsJ_31678 [Oryza sativa Japonica Group]
Length = 387
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 132/336 (39%), Positives = 211/336 (62%), Gaps = 11/336 (3%)
Query: 67 GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAG 126
G AR+LFDE+P N V+WN ++ GY+K ++ AR F RMP R+V SWSAMI + G
Sbjct: 9 GLARRLFDEIPRPNHVSWNALLDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCG 68
Query: 127 AYDPGLKLFREM----ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+ L +F M ++G+ + +T+ +VL C+HLG L+ G+ H ++ ++ +
Sbjct: 69 EHREALAVFEMMEATAARHDGVRANDVTMVSVLGACAHLGD--LVRGRKMHRYLEEHGFP 126
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFEL--MEERNVISWTALICGSAHRGYSEDALSLFE 240
LN ++AT LVDMYAKCG + AL VF+ +E +V+ W A+I G A G S ++L +F+
Sbjct: 127 LNIRLATSLVDMYAKCGAIVEALEVFQAVPVENTDVLIWNAVIGGLAVHGMSRESLQMFQ 186
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ GV P+E+T+ +L+ACVH GLVDE +F+ + E L P ++HY C+VD+ G+A
Sbjct: 187 KMEHAGVVPDEITYLSLLSACVHGGLVDEAWSFFRSL-EAQGLRPHVEHYACLVDVLGRA 245
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G LEEAY V+++M ++P+V + G+ L AC H ++ E V +Q + + +P++DG L
Sbjct: 246 GRLEEAYGVVKSMPMKPSVSVLGALLNACHLHGWVELGEAVGRQLVHL-QPDHDGRYIGL 304
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
++Y + +W+ A++ RK+M + V+K G S I
Sbjct: 305 -SNIYAVARRWQEAKKARKVMEERGVKKVPGFSEID 339
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 41/224 (18%)
Query: 10 QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFA 69
V ++ +++ +L +C H +L +H ++ + GF ++ +ATSL
Sbjct: 88 DGVRANDVTMVSVLGACAHLGDLVRGRKMHRYLEEHGFPLNIRLATSL------------ 135
Query: 70 RKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRN--VASWSAMIAAYLNAGA 127
+ Y+K G + EA + F+ +P+ N V W+A+I G
Sbjct: 136 ------------------VDMYAKCGAIVEALEVFQAVPVENTDVLIWNAVIGGLAVHGM 177
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE-LNEQ 186
L++F++M + G+ PD++T ++LS C H G V A F E + L
Sbjct: 178 SRESLQMFQKM-EHAGVVPDEITYLSLLSACVHGGLV-----DEAWSFFRSLEAQGLRPH 231
Query: 187 IA--TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAH 228
+ LVD+ + G L+ A V + M + +S + + H
Sbjct: 232 VEHYACLVDVLGRAGRLEEAYGVVKSMPMKPSVSVLGALLNACH 275
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 129/316 (40%), Positives = 195/316 (61%), Gaps = 5/316 (1%)
Query: 80 NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI 139
N +++ Y+K G V AR F++M R+V +WSAMI+ Y A L LF EM
Sbjct: 259 NPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEM- 317
Query: 140 SNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG 199
+ P+++T+ ++LS C+ LG+ L GK H FI K +L + T L+D YAKCG
Sbjct: 318 QKANIDPNEITMVSILSSCAVLGA--LETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCG 375
Query: 200 FLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLT 259
++ ++ VF M +NV+SWT LI G A G + AL F +M V+PN++TF GVL+
Sbjct: 376 SVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLS 435
Query: 260 ACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNV 319
AC H GLVDEGR F + ++ +EPRI+HYGCMVD+ G+AG +EEA++ I+ M ++PN
Sbjct: 436 ACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNA 495
Query: 320 IIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRK 379
+IW + LA+CK HK ++ E +KQ L +++P + G + L+ ++Y +WE A +VR
Sbjct: 496 VIWRTLLASCKVHKNVEIGEESLKQ-LIILEPTHSGD-YILLSNIYASVGRWEDALKVRG 553
Query: 380 LMLNQNVRKARGSSVI 395
M + ++K G S+I
Sbjct: 554 EMKEKGIKKTPGCSLI 569
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 99/332 (29%), Positives = 167/332 (50%), Gaps = 35/332 (10%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF +MH SV D F+ ILK C+ L+ +H+ I+K GF SH
Sbjct: 111 LFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSH------------ 158
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
GF + NT+I Y+ G V AR F+ M RNV +W++M A Y
Sbjct: 159 ----GFVK--------------NTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGY 200
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+G ++ +KLF EM+ + + D++T+ +VL+ C L L +G+ + ++ + +
Sbjct: 201 TKSGNWEEVVKLFHEMLELD-IRFDEVTLVSVLTACGRLAD--LELGEWINRYVEEKGLK 257
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
N + T LVDMYAKCG + A +F+ M+ R+V++W+A+I G + +AL LF M
Sbjct: 258 GNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEM 317
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
Q + PNE+T +L++C G ++ G K+ ++ ++ + ++D + K G
Sbjct: 318 QKANIDPNEITMVSILSSCAVLGALETG-KWVHFFIKKKRMKLTVTLGTALMDFYAKCGS 376
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
+E + EV M ++ NV+ W + + Q
Sbjct: 377 VESSIEVFGKMPVK-NVLSWTVLIQGLASNGQ 407
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 115/259 (44%), Gaps = 19/259 (7%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF +M + ++ + +++ IL SC L +H I K V + T+L+
Sbjct: 311 LDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDF 370
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNV----ASW 115
Y S + ++F ++P +N ++W +I+G + +G +A ++F M +NV ++
Sbjct: 371 YAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTF 430
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
+++A +AG D G LF M + G+ P G ++ LG GL+ + A F
Sbjct: 431 IGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMV---DILGRAGLI--EEAFQF 485
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKY------ALMVFELMEERNVISWTALICGSAHR 229
I + N A I + A C K +L ++E + + L A
Sbjct: 486 IKNMPIQPN---AVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASV 542
Query: 230 GYSEDALSLFEMMQATGVK 248
G EDAL + M+ G+K
Sbjct: 543 GRWEDALKVRGEMKEKGIK 561
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 71/162 (43%), Gaps = 12/162 (7%)
Query: 173 HGFIVKNEWELNEQIATILVDMYAKC--GFLKYALMVFELMEERNVISWTALICGSAHRG 230
H ++K L ++A L++ A + YA+ +F ++E + ++ +I G +
Sbjct: 44 HAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQIDEPDSPAYNIMIRGFTLKQ 103
Query: 231 YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHY 290
+A+ LF+ M V+P+E TF +L C + EG + +I ++ +
Sbjct: 104 SPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALI-----MKCGFGSH 158
Query: 291 G----CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
G ++ ++ G +E A V M E NV W S A
Sbjct: 159 GFVKNTLIHMYANCGEVEVARRVFDEMS-ERNVRTWNSMFAG 199
>gi|242096286|ref|XP_002438633.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
gi|241916856|gb|EER90000.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
Length = 529
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 136/397 (34%), Positives = 236/397 (59%), Gaps = 11/397 (2%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L +M R D +++ + +C+ +L++ + +++ + F + VA +LL Y
Sbjct: 134 LAEEMERSGATPDRVTLVTAVTACSRAGDLSLGRRIRAYMDGV-FGFSLPVANALLDMY- 191
Query: 63 VTSFGF---ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
T G+ A K+F ++PERN ++W ++ GY+ +G + +AR F + +++ W+AMI
Sbjct: 192 -TKNGYLEEAVKMFQQMPERNIISWTILVSGYAVAGQLDKARMLFYQCTQKDLILWTAMI 250
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A + G+++ L LFR+M + + PD+ T+ +L+ C+++G+ L G+ H +
Sbjct: 251 NACVQHGSFEEALTLFRDM-QLQRVEPDKFTVVTLLTCCANIGA--LDQGEWIHQYAEGR 307
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+++ + T L++MY+KCG + +L +F M+ R+ +WTA+ICG A G + AL LF
Sbjct: 308 NMKIDAVLGTALIEMYSKCGHVDKSLQIFGRMQGRDAAAWTAIICGLATNGQASKALELF 367
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
E MQ + KP+ +TF GVL AC H GLVDEGR++F+ + E Y +EPRI+HY C+V+L G
Sbjct: 368 EEMQRSKTKPDGITFIGVLNACCHGGLVDEGRRHFQAMKEIYQIEPRIEHYSCLVNLLGH 427
Query: 300 AGFLEEAYEVIRTMRLEPNVI-IWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
AG L EA ++IR M + + + ++G+ L ACK + +M+ER+ K+ + +N V
Sbjct: 428 AGLLYEAEKLIRDMPVNNDTMPLFGALLTACKAYGNVEMSERLTKRIAKEDCSQNP-DVN 486
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y +WE + RVR M + V+K G S+I
Sbjct: 487 VLMSNVYATASRWEESIRVRSKMTHPAVKKTAGCSMI 523
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 91/389 (23%), Positives = 168/389 (43%), Gaps = 68/389 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
M ++ + + + +DS++ +L++ +H+ +K GF Y A+SLL
Sbjct: 31 MAVYYDLRARGLVADSYTYPFVLRAIGVMKLSVEGRKVHAAAVKTGFRWDAYTASSLLEM 90
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
Y TM+ G V AR F+ MP R + W+ M+
Sbjct: 91 Y------------------------TML------GRVDFARKVFDEMPQRFLVLWNMMMR 120
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y+ G + + L EM G TPD++T+ ++ CS G + L G+ ++
Sbjct: 121 CYIRCGRFTAAVALAEEM-ERSGATPDRVTLVTAVTACSRAGDLSL--GRRIRAYM-DGV 176
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSA------------- 227
+ + +A L+DMY K G+L+ A+ +F+ M ERN+ISWT L+ G A
Sbjct: 177 FGFSLPVANALLDMYTKNGYLEEAVKMFQQMPERNIISWTILVSGYAVAGQLDKARMLFY 236
Query: 228 ------------------HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
G E+AL+LF MQ V+P++ T +LT C + G +D+
Sbjct: 237 QCTQKDLILWTAMINACVQHGSFEEALTLFRDMQLQRVEPDKFTVVTLLTCCANIGALDQ 296
Query: 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAAC 329
G ++ E +++ +++++ K G ++++ ++ M+ + W + +
Sbjct: 297 G-EWIHQYAEGRNMKIDAVLGTALIEMYSKCGHVDKSLQIFGRMQGR-DAAAWTAIICGL 354
Query: 330 KEHKQFDMAERVIKQALRMVKPENDGGVF 358
+ Q A + ++ R K + DG F
Sbjct: 355 ATNGQASKALELFEEMQR-SKTKPDGITF 382
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 114/242 (47%), Gaps = 11/242 (4%)
Query: 104 FERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGS 163
+ MPLR+ + +I G++ + ++ ++ + GL D T VL +G
Sbjct: 6 YHAMPLRDC---NVLIRTLARRGSFARVMAVYYDLRA-RGLVADSYTYPFVLRA---IGV 58
Query: 164 VGL-LMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTAL 222
+ L + G+ H VK + + A+ L++MY G + +A VF+ M +R ++ W +
Sbjct: 59 MKLSVEGRKVHAAAVKTGFRWDAYTASSLLEMYTMLGRVDFARKVFDEMPQRFLVLWNMM 118
Query: 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD 282
+ G A++L E M+ +G P+ +T +TAC G + GR+ +D +
Sbjct: 119 MRCYIRCGRFTAAVALAEEMERSGATPDRVTLVTAVTACSRAGDLSLGRRIRAYMDGVFG 178
Query: 283 LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVI 342
+ + ++D++ K G+LEEA ++ + M E N+I W ++ Q D A +
Sbjct: 179 FSLPVAN--ALLDMYTKNGYLEEAVKMFQQMP-ERNIISWTILVSGYAVAGQLDKARMLF 235
Query: 343 KQ 344
Q
Sbjct: 236 YQ 237
>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
Length = 719
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 146/429 (34%), Positives = 229/429 (53%), Gaps = 42/429 (9%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV- 62
F M R + D + +LKS + + +H IL+ G +V SL+ YV
Sbjct: 167 FRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSFVRVSLVDMYVK 226
Query: 63 VTSFGFARKLFDELPER------------------------------------NAVTWNT 86
V G A K+FDE PER V+W+T
Sbjct: 227 VEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMPKKENVSWST 286
Query: 87 MIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
+I G++K+G++ A + F++MP +NV SW+ M+ + G + L +F +M+ EG+ P
Sbjct: 287 LIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKML-EEGVRP 345
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
+ TI + LS C+ +G GL G H +I N L E + T LVDMYAKCG ++ A
Sbjct: 346 NAFTIVSALSACAKIG--GLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASE 403
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
VF E++++ +WT +I G A G+SE A++ F+ M G+KP+E+ F +LTAC+H+G
Sbjct: 404 VFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQ 463
Query: 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
VD G +F + +Y +EP ++HY +VD+ G++G L+EA I M + P+ +IWG+
Sbjct: 464 VDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGALF 523
Query: 327 AACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386
AC+ HK+ MA+ + + L++ +P + G + + + Y +WE AERVR LM N+ V
Sbjct: 524 CACRAHKKTKMAKFALNKLLKL-EPTHTGN-YIFLSNAYAALGQWEDAERVRVLMQNRGV 581
Query: 387 RKARGSSVI 395
K G S I
Sbjct: 582 HKNSGWSCI 590
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 113/263 (42%), Gaps = 50/263 (19%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +FS+M + V ++F+I+ L +C L+ G H Y+ + LH
Sbjct: 332 LSMFSKMLEEGVRPNAFTIVSALSACAKIGG-----------LEAGLRIHKYIKDNGLH- 379
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ + G A ++ Y+K GN+ A + F +++ +W+ MI
Sbjct: 380 -LTEALGTA-----------------LVDMYAKCGNIESASEVFGETEQKSIRTWTVMIW 421
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
+ G + + F++M+ G+ PD++ A+L+ C H G V + G +
Sbjct: 422 GWAIHGHSEQAIACFKQMMF-AGIKPDEVVFLALLTACMHSGQVDI-------GLNFFDS 473
Query: 181 WELNEQIA------TILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSE 233
L+ I T++VDM + G LK AL E M + + W AL C A R + +
Sbjct: 474 MRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFC--ACRAHKK 531
Query: 234 DALSLFEMMQATGVKPNEMTFTG 256
++ F + + ++P T TG
Sbjct: 532 TKMAKFALNKLLKLEP---THTG 551
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 113/274 (41%), Gaps = 42/274 (15%)
Query: 162 GSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTA 221
GS +L H I+ + + I T L+ + + ++L VF + +N+ ++ A
Sbjct: 90 GSKTILQLHQIHAQIIIHNLSSSSLITTQLISSSSLRKSINHSLAVFNHHKPKNLFTFNA 149
Query: 222 LICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA--------------C------ 261
LI G + +A+ F +M +G+KP+ +T+ VL + C
Sbjct: 150 LIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMAIHCMILRCG 209
Query: 262 ------VHTGLVDEGRKY------FKMID---EEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
V LVD K FK+ D E +D + ++ KAG +++A
Sbjct: 210 IELDSFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKA 269
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366
++ + M + NV W + + ++ D A + Q PE + +T + D ++
Sbjct: 270 VKLFKAMPKKENV-SWSTLIDGFAKNGDMDRAMELFDQM-----PEKNVVSWTTMVDGFS 323
Query: 367 MNEKWEGAERVRKLMLNQNVRKARGSSVISSLSV 400
N E A + ML + VR +++S+LS
Sbjct: 324 RNGDSEKALSMFSKMLEEGVR-PNAFTIVSALSA 356
>gi|297721835|ref|NP_001173281.1| Os03g0169300 [Oryza sativa Japonica Group]
gi|19071631|gb|AAL84298.1|AC073556_15 putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
gi|108706397|gb|ABF94192.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125585070|gb|EAZ25734.1| hypothetical protein OsJ_09569 [Oryza sativa Japonica Group]
gi|215769145|dbj|BAH01374.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255674238|dbj|BAH92009.1| Os03g0169300 [Oryza sativa Japonica Group]
Length = 510
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 152/409 (37%), Positives = 228/409 (55%), Gaps = 22/409 (5%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTH-FNNLTVIHHLHSHILKLGFI----SHVYVAT 55
++LFS M R D+F+ LKSC+ + + LH+ +K G + SHV+V
Sbjct: 106 IELFSAMRRAGAAPDAFTFTFALKSCSRCVSQRRLPSDLHAQAIKHGCLGAGSSHVHVHN 165
Query: 56 SLLHEYVV-TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVAS 114
+LLH Y + G AR++FDE+P R+ ++++ ++ + K+ ++ AR F++MP R+V S
Sbjct: 166 ALLHGYSSRAAVGDARRVFDEMPARDVISFSGLLTLHLKANDLDAARVVFDQMPHRDVVS 225
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
W+AMI+AY A L LF M + PD++T+ +V+S C+ LG L G+
Sbjct: 226 WTAMISAYARARRPQEALALFDAM----PVQPDEVTMLSVVSACTALGD--LATGERVCQ 279
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
++ N + + L+DMYAKCG L A +F+ M R++ SW I A G E
Sbjct: 280 YVDSNGFGWMVSLRNALMDMYAKCGSLTEARNLFDGMTVRSLASWNTFISAYASHGDVES 339
Query: 235 ALSLFEMMQATG--VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE----EYDLEPRIQ 288
++LF M A G VKP+ T VLTA H G V+EGR F I + DL I+
Sbjct: 340 TVALFHRMLADGKSVKPDGTTLLAVLTAYAHKGFVEEGRAMFNAILSGNYGKVDLT--IE 397
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348
HYGCMVDL G+AG LEEAY++I M + N ++WG+ L AC+ H +MAER + Q LR
Sbjct: 398 HYGCMVDLLGRAGQLEEAYKMIEQMPIPSNSVVWGALLGACRTHGDINMAERAV-QKLRS 456
Query: 349 VKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
+ PE +GG + L+ D+Y + + A +R++M RK G S S+
Sbjct: 457 LNPE-EGGYYILLSDMYAASGRTTEAMEIRRIMNQAGARKTAGQSSWST 504
>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 615
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 191/311 (61%), Gaps = 5/311 (1%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
N ++ Y K G AR F MP++N+ SW++MI+ + G + L +FR M GL
Sbjct: 277 NALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRRM-QTMGL 335
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
PD +T+ VL+ C++LG + L GK H +I KN + + +A LVDMYAKCG + A
Sbjct: 336 KPDSVTLVGVLNSCANLGDLEL--GKWVHSYIDKNHMKADGYVANALVDMYAKCGSIDQA 393
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
MVF+ M+ ++V S+TA+I G A G ++ AL++F M GV+P+ +T GVL+AC H
Sbjct: 394 FMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVLSACSHA 453
Query: 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324
GL++EGR++F+ + Y L+P+ +HYGCMVDL G+AG + EA M + P+ +WGS
Sbjct: 454 GLLEEGRRHFQDMSRLYHLQPQTEHYGCMVDLLGRAGLISEAEAFTNKMPIVPDASVWGS 513
Query: 325 FLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384
L ACK H + ++ E VI++ + M +PE DG + L+ ++Y+ +W A + RK M
Sbjct: 514 LLGACKIHAKVELGETVIQKLIEM-EPERDGA-YILMSNIYSSANRWRDALKWRKAMKQN 571
Query: 385 NVRKARGSSVI 395
N++K G S I
Sbjct: 572 NIKKTPGCSSI 582
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 93/354 (26%), Positives = 175/354 (49%), Gaps = 41/354 (11%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ QM + D++++ ++LK+C+ + +H+H +K G S+++V
Sbjct: 125 LYRQMLLIGLSPDTYTLPYLLKACSQSHAFIEALQIHAHSIKTGLSSNLFVK-------- 176
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
NT+++ Y+ SG + F++ P ++ SW+ +I AY
Sbjct: 177 ----------------------NTLMRFYAVSGFIEAVEKVFDQGPHWDLISWTTLIQAY 214
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
G + F M T D+MT+ VLS CS LG L GK ++ + ++
Sbjct: 215 SKMGYPSEAIAAFFRM----NCTADRMTLVVVLSACSQLGDFTL--GKKILAYMDHHLFD 268
Query: 183 LNEQI--ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
++ + L+DMY KCG A +F LM +N++SW ++I G AH+G ++AL +F
Sbjct: 269 VHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFR 328
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
MQ G+KP+ +T GVL +C + G ++ G+ ID+ + ++ +VD++ K
Sbjct: 329 RMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNH-MKADGYVANALVDMYAKC 387
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-VKPEN 353
G +++A+ V + M+ + +V + + + H + D A + + RM V+P++
Sbjct: 388 GSIDQAFMVFQAMKCK-DVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDH 440
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 89/206 (43%), Gaps = 36/206 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F +M + DS +++ +L SC + +L + +HS+I K + YVA
Sbjct: 324 LHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGYVA------ 377
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
N ++ Y+K G++ +A F+ M ++V S++AMI
Sbjct: 378 ------------------------NALVDMYAKCGSIDQAFMVFQAMKCKDVYSYTAMIV 413
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
+ G D L +F EM G+ PD +T+ VLS CSH GLL H +
Sbjct: 414 GFAMHGKADRALAIFSEM-PRMGVRPDHVTLVGVLSACSH---AGLLEEGRRHFQDMSRL 469
Query: 181 WELNEQIA--TILVDMYAKCGFLKYA 204
+ L Q +VD+ + G + A
Sbjct: 470 YHLQPQTEHYGCMVDLLGRAGLISEA 495
>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
Length = 640
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 135/381 (35%), Positives = 223/381 (58%), Gaps = 16/381 (4%)
Query: 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARK-LFDEL-PERN 80
L +C L V LH + +KL YVAT+LL Y A + LFD + P+ +
Sbjct: 136 LPAC---GGLAVGRALHGYAVKLALSGEPYVATALLGMYARAGDAAAARVLFDGMQPDPH 192
Query: 81 AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMIS 140
V+ M+ Y+K G + +AR F+ +P +++ W+AM+ Y G L+LFR M+
Sbjct: 193 VVSVTAMLTCYAKMGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLR 252
Query: 141 NEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE---LNEQIATILVDMYAK 197
+ G+ PD++++ LS + LG+ G+ H F+ + LN ++ T L+DMY K
Sbjct: 253 S-GVEPDEVSVVLALSAVAQLGTAE--SGRWLHSFVTNSSSRRVRLNARVGTALIDMYYK 309
Query: 198 CGFLKYALMVFELME--ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT 255
CG L+ A+ VF + +R++++W A++ G A G+S +AL+ F ++A G+ P ++TF
Sbjct: 310 CGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGHSREALAAFGQLRAQGLWPTDITFI 369
Query: 256 GVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-R 314
GVL AC H+GLVDEGR+ F+ + EEY +EP+++HYGCMVDL G+AG +EEA+E++++M R
Sbjct: 370 GVLNACSHSGLVDEGRELFRSMAEEYGIEPKVEHYGCMVDLLGRAGRVEEAFELVQSMTR 429
Query: 315 LEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGA 374
+P+ ++W S LAAC+ HK ++ +R+ + + G + L+ ++Y W
Sbjct: 430 TKPDAVMWASLLAACRLHKNMELGQRIADHLV--ANGLANSGTYVLLSNMYAAAGNWREV 487
Query: 375 ERVRKLMLNQNVRKARGSSVI 395
RVR +M ++K G S +
Sbjct: 488 GRVRAMMRASGIQKEPGCSAV 508
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 114/273 (41%), Gaps = 40/273 (14%)
Query: 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ 148
+ Y+ SG + A R P +++ I A+ + G + L L EM+ + GL P
Sbjct: 70 RAYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLHHAALALLSEMLLSHGLLPTA 129
Query: 149 MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDM-------------- 194
T+ A L C GL +G++ HG+ VK +AT L+ M
Sbjct: 130 HTLSASLPACG-----GLAVGRALHGYAVKLALSGEPYVATALLGMYARAGDAAAARVLF 184
Query: 195 ------------------YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
YAK G L A +F+ + +++I W A++ G G +AL
Sbjct: 185 DGMQPDPHVVSVTAMLTCYAKMGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEAL 244
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHY--GCMV 294
LF M +GV+P+E++ L+A G + GR + R+ ++
Sbjct: 245 RLFRRMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALI 304
Query: 295 DLFGKAGFLEEAYEVIRTMRL-EPNVIIWGSFL 326
D++ K G LE+A V + + +++ W + +
Sbjct: 305 DMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMV 337
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 14/158 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFIS---HVYVATSL 57
++LF +M R V D S++ L + LHS + + V T+L
Sbjct: 244 LRLFRRMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTAL 303
Query: 58 LHEYV-VTSFGFARKLFDEL--PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVAS 114
+ Y S A +F +L +R+ V WN M+ GY+ G+ EA F + LR
Sbjct: 304 IDMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGHSREALAAFGQ--LRAQGL 361
Query: 115 WSAMIA--AYLNA----GAYDPGLKLFREMISNEGLTP 146
W I LNA G D G +LFR M G+ P
Sbjct: 362 WPTDITFIGVLNACSHSGLVDEGRELFRSMAEEYGIEP 399
>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 136/392 (34%), Positives = 214/392 (54%), Gaps = 35/392 (8%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV 63
F ++ + DSFS++ +L +C + T + +I G +V+VATSLL YV
Sbjct: 203 FKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYV- 261
Query: 64 TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL 123
K GN+ A F MP +++ SWS MI Y
Sbjct: 262 -----------------------------KCGNLERANLIFSAMPEKDIVSWSTMIQGYA 292
Query: 124 NAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWEL 183
G L LF +M S E L PD T+ VLS C+ LG++ L G A + +NE+
Sbjct: 293 FNGLPQQALDLFFQMQS-ENLKPDCYTMVGVLSACATLGALDL--GIWASSLMDRNEFLS 349
Query: 184 NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQ 243
N + T L+DMY+KCG + A +F M+ ++ + W A++ G + G+++ SLF +++
Sbjct: 350 NPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVE 409
Query: 244 ATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFL 303
G++P+E TF G+L C H G V+EGR++F + + L P I+HYGCMVDL G+AG L
Sbjct: 410 KHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLL 469
Query: 304 EEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICD 363
EA+++I M ++PN ++WG+ L CK HK +AE+V+K+ + + +P N G + + +
Sbjct: 470 NEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIEL-EPWNSGN-YVQLSN 527
Query: 364 LYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+Y+ N +WE AE++R M Q ++K R S I
Sbjct: 528 IYSGNHRWEEAEKIRSTMKEQQIQKIRACSWI 559
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 112/239 (46%), Gaps = 14/239 (5%)
Query: 97 VCEARDF---------FERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD 147
+C A DF F ++ N+ W+ MI ++ +D + L+ M G P+
Sbjct: 55 LCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSM-RGGGFLPN 113
Query: 148 QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMV 207
TI VL C+ + + +G H +VK ++ + + T L+ +Y KC AL V
Sbjct: 114 NFTIPFVLKACAR--KLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKV 171
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
F+ + ++NV+SWTA+I G G+ +A+ F+ + G+KP+ + VL AC G
Sbjct: 172 FDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDC 231
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
G + I + + + ++D++ K G LE A + M E +++ W + +
Sbjct: 232 TSGEWIDRYISDS-GMGRNVFVATSLLDMYVKCGNLERANLIFSAMP-EKDIVSWSTMI 288
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 5/157 (3%)
Query: 199 GFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL 258
G Y+ +VF ++E N+ W +I G + +DA+ L+ M+ G PN T VL
Sbjct: 62 GSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVL 121
Query: 259 TACVHTGLVDEGRKYFK-MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEP 317
AC V G K ++ YD + ++ ++ L+ K ++A +V + +
Sbjct: 122 KACARKLDVRLGLKIHSLLVKAGYDHDVFVK--TSLLSLYVKCDNFDDALKVFDDIP-DK 178
Query: 318 NVIIWGSFLAACKEHKQFDMAERVIKQALRM-VKPEN 353
NV+ W + + F A K+ L M +KP++
Sbjct: 179 NVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDS 215
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 91/231 (39%), Gaps = 43/231 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF QM +++ D ++++ +L +C L + S + + F+S+ + T+L+
Sbjct: 301 LDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDM 360
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y S A ++F + ++ V WN M+ G S +G+ F
Sbjct: 361 YSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLF--------------- 405
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI--V 177
++ G+ PD+ T +L GC+H G V F +
Sbjct: 406 -----------------SLVEKHGIRPDENTFIGLLCGCTHGGFV-----NEGRQFFNNM 443
Query: 178 KNEWELNEQIA--TILVDMYAKCGFLKYALMVFELMEER-NVISWTALICG 225
K + L I +VD+ + G L A + M + N + W AL+ G
Sbjct: 444 KRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGG 494
>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
Length = 602
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 133/396 (33%), Positives = 224/396 (56%), Gaps = 6/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF M + D +I ++ +C +L V +H I K G +V+++L+
Sbjct: 177 LELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSSTLIST 236
Query: 61 Y-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y S +A + F E P +N V WNTMI + N+ + F+ MP R+V SW++MI
Sbjct: 237 YGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMI 296
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ G Y L F EM G++P+ +T+ + LS C+ G+ L G H ++ KN
Sbjct: 297 GGFARIGQYQEALTWFHEM-EFSGVSPNALTLLSTLSACASHGA--LDTGAWIHAYVDKN 353
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + + + L+DMY+KCG + A+ +FE R++ +WT+++CG A G E AL F
Sbjct: 354 DMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYF 413
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M+ V+P+++T GVL+AC H GL+D+G YF+ +++ + L P+++HYGCMVDL G+
Sbjct: 414 SKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGCMVDLLGR 473
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
G L+EAY++I M +E N IIWG+FL+AC+ H ++ E ++ L + D
Sbjct: 474 MGCLKEAYDLIMGMPMEANEIIWGAFLSACRVHNNVELGEVAARRLLGL--DPRDPWARV 531
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++ ++Y KW+ + +RK + + ++K+ G S I
Sbjct: 532 MLSNMYAEEAKWDRSMGLRKEIKKKGLKKSPGCSSI 567
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/367 (23%), Positives = 159/367 (43%), Gaps = 68/367 (18%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV 63
+ Q R + + + +++LK+ + +H+ +++ GF +V+ +LL YV
Sbjct: 79 YMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVA 138
Query: 64 TSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
G R++FDE+ R P + W+ +I AY
Sbjct: 139 CGLVGKGRQVFDEM-----------------------------RQP--GLVLWTLIIRAY 167
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+ + L+LFR M GLTPD + I V+S C LG +G+ K+ H FI K+ E
Sbjct: 168 VCVTFPEKALELFRTM-REVGLTPDMVAISTVVSACGLLGDLGV--AKAMHCFIEKSGIE 224
Query: 183 LNEQIATILVDMYAKCGFLKYAL-------------------------------MVFELM 211
++ +++ L+ Y +CG L YA +F+ M
Sbjct: 225 VDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSM 284
Query: 212 EERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR 271
+R+V+SW ++I G A G ++AL+ F M+ +GV PN +T L+AC G +D G
Sbjct: 285 PDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGA 344
Query: 272 KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKE 331
+D+ D+ ++D++ K G +++A ++ ++ W S +
Sbjct: 345 WIHAYVDKN-DMNRDGSLDSSLIDMYSKCGDIDKAVQIFEE-STRRDLFTWTSIVCGLAM 402
Query: 332 HKQFDMA 338
H + + A
Sbjct: 403 HGRGEKA 409
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 111/244 (45%), Gaps = 15/244 (6%)
Query: 106 RMPLRNVASWSAMIAAYLNAG--AYDPGLKLFREMISNEGLTPDQMT----IGAVLSGCS 159
R+ NV W+ MI + G DP L + + + GL P+ T + A++SG
Sbjct: 48 RLDCANVFVWNTMIRKQVENGLITRDPPLLYYMQGL-RAGLRPNGHTFMYLLKALVSGQE 106
Query: 160 HLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISW 219
+ G+ H +V+ + +E ++ L+ Y CG + VF+ M + ++ W
Sbjct: 107 ------VKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLW 160
Query: 220 TALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE 279
T +I + E AL LF M+ G+ P+ + + V++AC G + + I E
Sbjct: 161 TLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFI-E 219
Query: 280 EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAE 339
+ +E ++ +G+ G L+ AY + ++ N+++W + + EH ++ +
Sbjct: 220 KSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMK-NIVVWNTMIHQSVEHNNLELGK 278
Query: 340 RVIK 343
++ +
Sbjct: 279 QLFQ 282
>gi|125540362|gb|EAY86757.1| hypothetical protein OsI_08137 [Oryza sativa Indica Group]
Length = 493
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 124/335 (37%), Positives = 208/335 (62%), Gaps = 12/335 (3%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR FD +PE+N V+WNTM+ Y+++G + +AR F+RMP RN A+W +MI L +
Sbjct: 158 ARWFFDAMPEKNVVSWNTMLGAYARAGMLPKARKLFDRMPSRNAATWGSMITGLLQSDHC 217
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ-- 186
+ L++F +M++ G+ P++ + + +S C+ L + G HG+ E ELN
Sbjct: 218 EEALRVFSDMVAC-GVVPNEPALVSTVSACTQLR--WMEHGTWVHGYA---ERELNGAMS 271
Query: 187 --IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQA 244
+AT +VDMY KCG ++ A+ VF M RN+ SW ++I G A G ALSLF MQ
Sbjct: 272 AVLATAIVDMYGKCGSIRDAVRVFAAMPVRNIYSWNSMIAGLAMNGSERQALSLFWKMQL 331
Query: 245 TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLE 304
GV+PN++TF G+L+AC H+GLVDEGR F + + ++P +HYG MVDL G++G +
Sbjct: 332 AGVRPNDITFIGLLSACSHSGLVDEGRWLFYKMVNHFGIQPVPEHYGLMVDLLGRSGHVR 391
Query: 305 EAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDL 364
EA + +++M +EP+ +WG+ ACK H + ++ E V K+ + + +P++ G + L+ ++
Sbjct: 392 EAVDFVKSMPVEPHPGLWGALAGACKIHGEVELGEEVAKKLIEL-EPQH-GSRYILLSNI 449
Query: 365 YTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLS 399
Y + +W+ VR+++ ++ V K G++++ + S
Sbjct: 450 YATSNRWDDMANVRRILKDRKVPKGTGNAIVGNDS 484
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 91/249 (36%), Gaps = 63/249 (25%)
Query: 141 NEGLTPDQMTIGAVLSGCSHLG---------SVGLLMGKSAHGFIVKNEW---------- 181
N L PD +++ L CS L S+ + +G + ++V
Sbjct: 64 NHRLLPDHLSLSFSLHPCSRLPSHPVASVVHSLAVRLGHARDVYVVNAAASAYFAAADVA 123
Query: 182 -------ELNEQIA-----TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR 229
E + +A T +V +A G ++ A F+ M E+NV+SW ++ A
Sbjct: 124 SAERLFSEASRDVADVVTWTTMVTGHANAGDVERARWFFDAMPEKNVVSWNTMLGAYARA 183
Query: 230 G-------------------------------YSEDALSLFEMMQATGVKPNEMTFTGVL 258
G + E+AL +F M A GV PNE +
Sbjct: 184 GMLPKARKLFDRMPSRNAATWGSMITGLLQSDHCEEALRVFSDMVACGVVPNEPALVSTV 243
Query: 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPN 318
+AC ++ G + E + +VD++GK G + +A V M + N
Sbjct: 244 SACTQLRWMEHGTWVHGYAERELNGAMSAVLATAIVDMYGKCGSIRDAVRVFAAMPVR-N 302
Query: 319 VIIWGSFLA 327
+ W S +A
Sbjct: 303 IYSWNSMIA 311
>gi|449445234|ref|XP_004140378.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 542
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 137/403 (33%), Positives = 235/403 (58%), Gaps = 9/403 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F +M + V D + ++K+ + N + +H HI+K G ++ SL+H
Sbjct: 98 ITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGMAVHVHIVKSGHEIDKFIQNSLIHM 157
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y ARK+FDE+P +N VTWN M+ GY+K G++ AR+ F MP ++V SWS++I
Sbjct: 158 YASCRDIASARKVFDEMPRKNLVTWNAMLDGYAKCGDLNMAREVFNLMPEKDVVSWSSLI 217
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y+ Y + LF M S +G +++T+ + L C+HLG+ L G+ H +IV+N
Sbjct: 218 DGYVKGRVYGEAMALFERM-SFDGPMANEVTLVSALCACAHLGA--LEHGRMMHRYIVEN 274
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFEL--MEERNVISWTALICGSAHRGYSEDALS 237
E L + T LVDMYAKCG + AL VF ++E +V+ W A+I G A G ++A++
Sbjct: 275 ELPLTIVLQTSLVDMYAKCGAIHEALTVFRACSLQEADVLIWNAIIGGLATHGLIKEAMN 334
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LF M+ G+ P+E+T+ +L+ C H GLV+E +F + ++ + P+++HY CMVD
Sbjct: 335 LFCEMKMVGIVPDEITYLCLLSCCAHGGLVEEAWYFFDCL-RKHGMIPKVEHYACMVDAL 393
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
+AG + EAY+ + M ++P + G+ L+ C +H + D+A +V+ + L + P +DG
Sbjct: 394 SRAGQVSEAYQFLCQMPVQPTSSMLGALLSGCMKHGKLDIA-KVVGRRLVELDPNHDGR- 451
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLSV 400
+ + ++Y +++W+ A+ +R+ M + V+K+ G S I V
Sbjct: 452 YVGLSNIYAADKRWDDAKNIREAMERKGVKKSPGFSFIEVYGV 494
>gi|115486591|ref|NP_001068439.1| Os11g0673000 [Oryza sativa Japonica Group]
gi|77552474|gb|ABA95271.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113645661|dbj|BAF28802.1| Os11g0673000 [Oryza sativa Japonica Group]
Length = 515
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 147/402 (36%), Positives = 223/402 (55%), Gaps = 19/402 (4%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+L S + R P D S L +L + + L+ +H L +L+LGF+SH ++ +LL Y
Sbjct: 115 RLLSSLRRLHAP-DRLSFLPLLGCVSSLSLLSAVHAL---LLRLGFLSHHAISLALLKPY 170
Query: 62 VVTSFGFARKLFDELPERN--AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVAS----- 114
+AR LFDE+ +RN V +NT+I ++ ++ AR F+ M +
Sbjct: 171 ---PLHYARVLFDEMTQRNKCTVAYNTLITACFRADDLGAARHLFDEMQRYRRSRRSVVS 227
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
W+ MIA D + F M+ + PD T+ AVL C LG+VG+ G+ AH
Sbjct: 228 WNVMIAGCAWCKKDDIAVLCFERMVREGEVAPDDGTLAAVLPVCGRLGNVGV--GRWAHE 285
Query: 175 FIVKNEW-ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE 233
K+ + +A ++DMY KCG + A VF+ M +R+V+SW +I G + G+
Sbjct: 286 HARKSGLLDRKVHVANAVMDMYCKCGDVHSAREVFKGMRQRSVVSWNTMISGFSLNGHGI 345
Query: 234 DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293
+ + L+ M+ G PNE+TF GVL C H G VD GR F+ + E+ +EP I+HYGCM
Sbjct: 346 EGIELYREMRTHGEMPNEVTFLGVLGCCAHAGAVDVGRDIFQSMQLEHGIEPVIEHYGCM 405
Query: 294 VDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353
VDLFG++G LEEAY +I+ M + PN IWG+ L+AC H +AE +K+ + + +P N
Sbjct: 406 VDLFGRSGLLEEAYALIQGMPMRPNAAIWGALLSACHAHSGISIAEVALKELINL-EPWN 464
Query: 354 DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G + L+ +LY +WE A R+LM +V+KA G S+I
Sbjct: 465 SGN-YVLLANLYAETGRWEEAGDARRLMRRMSVQKAPGQSLI 505
>gi|345505216|gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
Length = 617
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 122/327 (37%), Positives = 202/327 (61%), Gaps = 4/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A+ LFD +P R+ VTW TMI GY+K G V +A+ F++MP R+V S+++M+A Y+ +
Sbjct: 275 AKDLFDAMPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMMAGYVQNKYH 334
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L++F +M L+PD+ T+ VLS + LG + M H +IV+ ++ L ++
Sbjct: 335 MEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAM--DMHLYIVEKQFFLGGKLG 392
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+DMY+KCG +++A++VFE +E +++ W A+I G A G E A + ++ +K
Sbjct: 393 VALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIK 452
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+++TF GVL AC H+GLV EG F+++ ++ +EPR+QHYGCMVD+ ++G +E A
Sbjct: 453 PDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKN 512
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+I+ M +EPN +IW +FL AC HK+F+ E V K + ++ + + L+ ++Y
Sbjct: 513 LIQEMPIEPNDVIWRTFLTACNHHKEFETGELVGKHLI--LQAGYNPSSYVLLSNMYASF 570
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
KW+ R+R +M + + K G S I
Sbjct: 571 GKWKDVRRIRTMMKERKIEKIPGCSWI 597
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/361 (25%), Positives = 178/361 (49%), Gaps = 27/361 (7%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF M V D FS+ +LK+C+ + +H + K G S +++ L+ Y+
Sbjct: 112 LFCLMLENGVSVDKFSMSLVLKACSRLGFVKGGLQIHGILRKTGLCSDLFLQNCLIGLYL 171
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP--LRNVASWSAMI 119
GFAR++FD +P+R++V++N+MI GY K G + AR+ F+ MP ++N+ SW+++I
Sbjct: 172 KCGCLGFARQIFDRMPQRDSVSFNSMIDGYVKRGLIESARELFDLMPREVKNLISWNSII 231
Query: 120 AAYLN-AGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
+ Y + D LF EM + ++ + M G V G + L +V
Sbjct: 232 SGYAQTSDGVDIASNLFAEMPEKDLISWNSMIDGYVKHG--RIEDAKDLFDAMPRRDVVT 289
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
W ++D YAK GF+ A +F+ M R+V+S+ +++ G Y +AL +
Sbjct: 290 --W-------ATMIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMMAGYVQNKYHMEALEI 340
Query: 239 F-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDL 296
F +M + + + P+E T VL+A G + + + ++++++ L ++ ++D+
Sbjct: 341 FSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLG--VALIDM 398
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH----KQFDMAERVIKQALRMVKPE 352
+ K G ++ A V + ++ W + + H FDM ++ + R +KP+
Sbjct: 399 YSKCGSIQHAMLVFEGIE-NKSIDHWNAMIGGLAIHGLGESAFDMLLQIER---RSIKPD 454
Query: 353 N 353
+
Sbjct: 455 D 455
>gi|357487459|ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355515352|gb|AES96975.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 525
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 144/403 (35%), Positives = 230/403 (57%), Gaps = 14/403 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+Q+F +M + + D+++I ++LK+C F++ + +H + KLG + +YV SL+
Sbjct: 92 LQVFVKMLQSELKPDNYTIPYVLKACGTFHDCSFGKMIHGYSSKLGLVFDIYVGNSLMAM 151
Query: 61 YVVTSFG---FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
Y V FG AR +FDE+P N V+W+ MI GY+K G+V AR FF+ P ++ W A
Sbjct: 152 YCV--FGDVVAARYVFDEIPSLNVVSWSVMISGYAKVGDVDSARLFFDEAPEKDKGIWGA 209
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MI+ Y+ + L LFR M + + PD+ ++LS C+HLG+ L +G H +
Sbjct: 210 MISGYVQNSCFKESLYLFRLMQLTD-IVPDESIFVSILSACAHLGA--LEIGVWIHQHLN 266
Query: 178 KNEW-ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
+ + L+ +++T L+DMYAKCG L+ A +F+ M R+V+ W A+I G A G + AL
Sbjct: 267 QLKLVPLSVRLSTSLLDMYAKCGNLELAKRLFDSMNMRDVVCWNAMISGMAMHGDGKGAL 326
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
LF M+ GVKP+++TF V TAC ++G+ EG + Y++ P+ +HYGC+VDL
Sbjct: 327 KLFYDMEKVGVKPDDITFIAVFTACSYSGMAYEGLMLLDKMCSVYNIVPKSEHYGCLVDL 386
Query: 297 FGKAGFLEEAYEVIRTMRLEPN----VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE 352
+AG EEA +IR + N + W +FL+AC H + +AE ++ L++
Sbjct: 387 LSRAGLFEEAMVMIRKITNSWNGSEETLAWRAFLSACCNHGETQLAELAAEKVLQL-DNH 445
Query: 353 NDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
GV+ L+ +LY + K A RVR +M + KA G S +
Sbjct: 446 IHSGVYVLLSNLYAASGKHSDARRVRDMMKIKGTNKAPGCSSV 488
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 79/371 (21%), Positives = 149/371 (40%), Gaps = 75/371 (20%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL-----HEYVVTSFGFARKLFD 74
L +L+ C +L H+ + G ++ + + +L H++ S +A ++F+
Sbjct: 9 LVLLEKCKSMKHLK---QAHAQVFTTGLENNTFALSRVLAFCSSHKHHHESLTYACRVFE 65
Query: 75 ELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKL 134
++ +NT+IK A+L + L++
Sbjct: 66 QIQNPTVCIYNTLIK-------------------------------AFLVNNKFKSALQV 94
Query: 135 FREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDM 194
F +M+ +E L PD TI VL C GK HG+ K + + L+ M
Sbjct: 95 FVKMLQSE-LKPDNYTIPYVLKACGTFHDCSF--GKMIHGYSSKLGLVFDIYVGNSLMAM 151
Query: 195 YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA------------------- 235
Y G + A VF+ + NV+SW+ +I G A G + A
Sbjct: 152 YCVFGDVVAARYVFDEIPSLNVVSWSVMISGYAKVGDVDSARLFFDEAPEKDKGIWGAMI 211
Query: 236 ------------LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDL 283
L LF +MQ T + P+E F +L+AC H G ++ G + +++ +
Sbjct: 212 SGYVQNSCFKESLYLFRLMQLTDIVPDESIFVSILSACAHLGALEIGVWIHQHLNQLKLV 271
Query: 284 EPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIK 343
++ ++D++ K G LE A + +M + +V+ W + ++ H A ++
Sbjct: 272 PLSVRLSTSLLDMYAKCGNLELAKRLFDSMNMR-DVVCWNAMISGMAMHGDGKGALKLFY 330
Query: 344 QALRM-VKPEN 353
++ VKP++
Sbjct: 331 DMEKVGVKPDD 341
>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Brachypodium distachyon]
Length = 892
Score = 254 bits (649), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 138/399 (34%), Positives = 230/399 (57%), Gaps = 13/399 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L S M Q + + ++ L +C L+ LH + KL YVAT+LL
Sbjct: 374 LALLSDMLAQGLLPTAHTLSASLPAC---RGLSPGRALHGYAFKLALAGDSYVATALLGM 430
Query: 61 YV-VTSFGFARKLFDE-LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y AR LFD+ LP+ + V+ M+ Y+ G + +AR F+ +P ++ W+AM
Sbjct: 431 YARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAM 490
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I Y G + L+LFR M+ + G+ PD++T+ VLS + LG+V GK H + VK
Sbjct: 491 IDGYTQHGRPNEALRLFRRMLGS-GVEPDEVTVVLVLSAVAQLGTVE--SGKWLHSY-VK 546
Query: 179 NEW--ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
N +L+ ++ T L+DMY KCG L A+ VF + +++++ W A+I G A G S AL
Sbjct: 547 NSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKAL 606
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
+F + G+ P ++TF G+L AC H+G+V+EGR++F+ ++ EY ++P+I+HYGCMVDL
Sbjct: 607 EMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCMVDL 666
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
G+AG ++EA+ ++++M++ P+ ++W S LAAC+ HK + +++ + K + G
Sbjct: 667 LGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADYLV--AKGLANSG 724
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++ L+ ++Y W RVR +M ++K G S I
Sbjct: 725 MYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSI 763
>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 596
Score = 254 bits (649), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 141/396 (35%), Positives = 222/396 (56%), Gaps = 10/396 (2%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF +M S+ ++F+ + + C++ + H ++K F V+V S++ Y
Sbjct: 79 LFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFHGMVIKNSFEMDVFVRNSIIRFYS 138
Query: 63 VTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
V AR +FDE E + V+WN+MI G ++GN+ EA F +M RN SW+ MI+
Sbjct: 139 VCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILEALSLFSKMTERNDISWNMMISG 198
Query: 122 YLNAGAYDPGLKLFREM--ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y G L LFREM + E P+ + +VLS CS LG+ L G H +I K
Sbjct: 199 YAQNGQPKEALALFREMQMLDQE---PNSAILVSVLSACSQLGA--LDHGCWVHCYIGKK 253
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
++ ++ L+DMYAKCG + A+ F +R+V ++TA I G A G SE+AL LF
Sbjct: 254 CVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMNGCSEEALQLF 313
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
E M+ G+ P+ +++ VL AC H G V++G YF + + + + P + HY CMVDL G+
Sbjct: 314 EQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVHGIRPELDHYACMVDLLGR 373
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG LEEA + + +M ++P+ +IWG+ L AC+ + +M +RV +L + +N G +
Sbjct: 374 AGLLEEAEKFVASMPIKPDNVIWGALLGACRVYGNAEMGQRV--GSLLVESDQNHDGRYI 431
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y + K E AE+VRK M + V + G S+I
Sbjct: 432 LLSNIYAESMKGEDAEQVRKTMRRRKVDRVPGCSLI 467
>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Vitis vinifera]
Length = 785
Score = 254 bits (649), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 138/398 (34%), Positives = 232/398 (58%), Gaps = 10/398 (2%)
Query: 1 MQLFSQM-HRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+ +FS+M S D F++ L +C + NL + +H+HI++ F + V +L+
Sbjct: 262 LDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALIS 321
Query: 60 EYVVTS-FGFARKLFDE--LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
Y + A+K+ ++ + + + + ++ GY K G++ AR F+ + +R+V +W+
Sbjct: 322 MYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWT 381
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
AMI Y+ G ++LFR MI EG P+ T+ +LS S L S+ G+ H
Sbjct: 382 AMIVGYVQNGFNQDAMELFRSMI-KEGPKPNNYTLATMLSVSSSLASLD--HGRQIHASA 438
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSEDA 235
++ + ++ L+ MYAK G + A VF L+ +R+ I+WT++I A G E+A
Sbjct: 439 TRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEA 498
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
L+LFE M G+KP+ +T+ GVL+AC H GLV++GR Y+ ++ + + P HY CM+D
Sbjct: 499 LTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMID 558
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
LFG+AG L+EA+ I M +EP+VI WGS LA+CK HK ++AE V + L +++PEN G
Sbjct: 559 LFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAE-VAAERLLLIEPENSG 617
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
++ + ++Y+ +WE A +RK M ++ V+K +G S
Sbjct: 618 A-YSALANVYSACGQWENAANIRKSMKDKGVKKDQGFS 654
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 105/389 (26%), Positives = 187/389 (48%), Gaps = 44/389 (11%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+F +M VP F++ ++L SC L + +HS ++K G S++ VA SLL+ Y
Sbjct: 132 MFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYA 191
Query: 63 VTSFGFARKL-FDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+ K+ FD + ++ +WNTMI + +SG V A+ FE+M R+V SW+AMI+
Sbjct: 192 KSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISG 251
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y G L +F +M+ + PD+ T+ + LS C++L + L +GK H I++ E+
Sbjct: 252 YNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLEN--LKLGKQIHAHIIRTEF 309
Query: 182 --------------------ELNEQIA-------------TILVDMYAKCGFLKYALMVF 208
E+ ++I T L+D Y K G + A +F
Sbjct: 310 DTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIF 369
Query: 209 ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
+ + R+V++WTA+I G G+++DA+ LF M G KPN T +L+ +D
Sbjct: 370 DSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLD 429
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
GR+ + + ++ ++ K+G + +A V + + + I W S + A
Sbjct: 430 HGRQIHASATRSGNAS-SVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIA 488
Query: 329 CKEH----KQFDMAERVIKQALRMVKPEN 353
+H + + ER+++ +KP++
Sbjct: 489 LAQHGLGEEALTLFERMLENG---IKPDH 514
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/364 (27%), Positives = 184/364 (50%), Gaps = 42/364 (11%)
Query: 13 PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGF-ARK 71
PSD ++ L+ F + +H+ I+K G V++ +L++ Y T F + A +
Sbjct: 12 PSDPYT--SFLQRSLKFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHR 69
Query: 72 LFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPG 131
+FDE+P ++ +WN ++ GY+K G + EA FE MP + SW+AMI Y G ++
Sbjct: 70 VFDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENA 129
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
+ +FREM+S++ + P Q T+ VL+ C+ + +G+ G+ H F+VK+ +A L
Sbjct: 130 IGMFREMVSDD-VPPTQFTLTNVLASCAAVECLGI--GRKVHSFVVKHGLSSYISVANSL 186
Query: 192 VDMYAK-------------------------------CGFLKYALMVFELMEERNVISWT 220
++MYAK G + A + FE M ER+V+SW
Sbjct: 187 LNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWN 246
Query: 221 ALICGSAHRGYSEDALSLF-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMID 278
A+I G G+ +AL +F +M+ + KP++ T L+AC + + G++ + +I
Sbjct: 247 AMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIR 306
Query: 279 EEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI-RTMRLEPNVIIWGSFLAACKEHKQFDM 337
E+D + + ++ ++ K+G +E A ++I ++M +VI + + L + +
Sbjct: 307 TEFDTFGAVGN--ALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINP 364
Query: 338 AERV 341
A R+
Sbjct: 365 ARRI 368
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 2/158 (1%)
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
I++ YAK G L+ A VFE M E + +SWTA+I G G E+A+ +F M + V
Sbjct: 83 NIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVP 142
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P + T T VL +C + GRK + ++ L I +++++ K+G A
Sbjct: 143 PTQFTLTNVLASCAAVECLGIGRKVHSFV-VKHGLSSYISVANSLLNMYAKSGDPVTAKI 201
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQAL 346
V M+L+ + W + +++ + D+A+ +Q +
Sbjct: 202 VFDRMKLK-STSSWNTMISSHMQSGLVDLAQVQFEQMI 238
>gi|242042383|ref|XP_002468586.1| hypothetical protein SORBIDRAFT_01g048560 [Sorghum bicolor]
gi|241922440|gb|EER95584.1| hypothetical protein SORBIDRAFT_01g048560 [Sorghum bicolor]
Length = 581
Score = 254 bits (649), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 143/388 (36%), Positives = 220/388 (56%), Gaps = 17/388 (4%)
Query: 14 SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVY-VATSLLHEYVVTSFGFARKL 72
D F+ IL L ++ LH+ +LKLGF +H + L A ++
Sbjct: 104 PDHFTFPRILPGA---QPLHLVAQLHALLLKLGFHAHTQSLNALLAAYLANARPDLASRV 160
Query: 73 F-----DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
F D L + V+W TM+ G K G V +AR+ F+ MP RN+ SW+AM++ Y+ G
Sbjct: 161 FRGGGGDAL---DVVSWTTMVGGLVKLGRVDDARELFDGMPERNLVSWNAMMSGYVKTGR 217
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
+ L++F EM + G+ + + C+ G+ L G+ H ++ ++ E+++++
Sbjct: 218 FLDALEVFDEMRAR-GVDGNAFVAATAVVACT--GAGALARGREVHRWVERSGIEMDDKL 274
Query: 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
AT +VDMY KCG ++ A VFE + R + SW +I G A G EDAL+LF +M+ GV
Sbjct: 275 ATAVVDMYCKCGCVEEAWRVFEALPARGLTSWNCMIGGFAVHGRGEDALNLFGLMEREGV 334
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
P+++T VLTAC H G+V EGR YF I + Y + P+++HYGCMVDL+G+AG LEEA
Sbjct: 335 APDDVTLVNVLTACAHAGMVSEGRHYFNYISQRYGIVPKMEHYGCMVDLYGRAGQLEEAK 394
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM 367
+VI+ M +EP+V + G+ A K H D+ E + + + + P+N G + L+ +L
Sbjct: 395 KVIQDMPMEPDVGVLGALFGASKIHGDVDLGEAIGWRVIEL-DPQNS-GRYVLLANLLAT 452
Query: 368 NEKWEGAERVRKLMLNQNVRKARGSSVI 395
+WE RVR+LM +NV K G SVI
Sbjct: 453 AGRWEDVARVRRLMDERNVSKEAGRSVI 480
>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 254 bits (649), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 136/400 (34%), Positives = 227/400 (56%), Gaps = 11/400 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L++ M +V SF+ + + N ++ LH H GF++ +YV +++H
Sbjct: 97 IRLYTSMLNNNVSPVSFTFSALF---SLLKNPSLGSQLHLHAFLFGFVNDLYVGNTIIHM 153
Query: 61 YVVTSFGF---ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
YV FG ARK+FDE+P R+ VTW +I Y++SG++ A + F +P++++ +W++
Sbjct: 154 YV--KFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDSACELFVGLPVKDMVAWTS 211
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
M+ Y L+ FR+M G+ D++T+ +S C+ LG G
Sbjct: 212 MVTGYSQNAMPKKALQFFRKM-REAGVVTDEITLVGAISACAQLGVSGYADWIREIAESS 270
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
+ N + + L+DMY+KCG ++ A VF+ M+E NV S++++I G A G + A+
Sbjct: 271 RFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIVGFAVHGRARSAIK 330
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LF M G+KPN +TF G+ TAC H G+V++G++ F + E Y + P HY CM DL
Sbjct: 331 LFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMKECYGVSPTADHYACMADLL 390
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
G+AG LE+A ++++TM +EPN +WG+ L A H D+AE + ++L ++P+N G
Sbjct: 391 GRAGHLEKALQLVQTMPMEPNGGVWGALLGASHIHGNPDVAE-IASRSLFELEPDNLGN- 448
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
+ L+ Y + KW+ RVRKLM + +RK G S + +
Sbjct: 449 YLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGCSWVEA 488
>gi|326496937|dbj|BAJ98495.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 491
Score = 254 bits (649), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 143/415 (34%), Positives = 224/415 (53%), Gaps = 36/415 (8%)
Query: 13 PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARK 71
P D S+ L SCT +L V LHS ++LG VYV ++ + Y T A +
Sbjct: 69 PPDHLSLSFSLHSCTRSPSLPVASLLHSFAVRLGHARDVYVLSAAVSAYFRATDVASAER 128
Query: 72 LFDELPE-RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDP 130
LF + + VTW TM+ G++ +G++ AR FF+ MP RNV SW+AM+ AY +AG
Sbjct: 129 LFSYTKDVADVVTWTTMVTGHANTGDLERARWFFDAMPERNVVSWNAMLGAYASAGMLSK 188
Query: 131 GLKLFREMISNE------------------------------GLTPDQMTIGAVLSGCSH 160
KLF M S G+ P++ + + +S CS
Sbjct: 189 ARKLFDIMPSRNAASWSSMVTGLVRSNRCEEALRVFSEMIGMGVVPNESALVSAVSACSL 248
Query: 161 LGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWT 220
L S L G H + + ++ +AT +VDMY KCG + A+ VF M +N+ SW
Sbjct: 249 LRS--LEHGVWVHAYAKRELQGMSLVLATAIVDMYGKCGGIHNAVRVFAAMPVKNIYSWN 306
Query: 221 ALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE 280
++I G A G ALSLF MQ GV+PN++TF G+L AC H+GLVDEGR F M+
Sbjct: 307 SMITGLAMNGREMQALSLFWKMQMAGVRPNDITFIGLLGACSHSGLVDEGRWLFNMMVNG 366
Query: 281 YDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAER 340
+ ++P +HYG MVDL G+AG + EA + + +M +EP+ +WG+ ACK H + ++ E
Sbjct: 367 FGIQPVQEHYGLMVDLLGRAGHVREAVDFVNSMPVEPHPGLWGALAGACKIHGEVELGEE 426
Query: 341 VIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ K+ + + +P + G + L+ ++Y + +W+ VR+L+ ++ V K G++++
Sbjct: 427 IAKKLIEL-EPRH-GSRYILLSNIYGASNRWDDMATVRRLLKDRKVPKGTGNAMV 479
>gi|297833170|ref|XP_002884467.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330307|gb|EFH60726.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 657
Score = 254 bits (649), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 131/400 (32%), Positives = 242/400 (60%), Gaps = 9/400 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLG--FISHVYVATSLL 58
++L+ +M + D +++L +L C H +++ + +H I + G + S++ + +LL
Sbjct: 216 LELYYKMVSDGIEPDEYTLLGLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILRNALL 275
Query: 59 HEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
Y G A++ FD L +++ +WNTM+ G+ + G++ A+ F++MP R++ SW++
Sbjct: 276 DMYFKCKESGLAKRAFDALKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPQRDLVSWNS 335
Query: 118 MIAAYLNAGAYDPGLK-LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
++ Y G ++ LF EM+ E + PD++T+ +++SG ++ G L G+ HG +
Sbjct: 336 LLFCYSKKGCDQRAVRELFYEMLIVEKVKPDRVTMVSLISGAANNGE--LSHGRWVHGLM 393
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
++ + E + +++ L+DMY KCG ++ A MVF+ E++V WT++I G A GY + AL
Sbjct: 394 IRLQLEGDAFLSSALIDMYCKCGLIERAFMVFKTATEKDVPLWTSMITGFAFHGYGQQAL 453
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
LF+ MQ V PN++T VLTAC H+GLV+EG F + E++ P +HYG +VDL
Sbjct: 454 QLFKRMQEEDVTPNKVTLLAVLTACSHSGLVEEGLHVFYHMKEKFGFHPETEHYGSLVDL 513
Query: 297 FGKAGFLEEAYEVIRT-MRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
+AG LEEA ++++ M + P+ +WGS L+AC+E + + AE + + L++ +PE +G
Sbjct: 514 LCRAGRLEEAKDIVQNKMPMRPSQSMWGSILSACREGEDIETAELALSELLKL-EPEKEG 572
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G + L+ ++Y +W +++ R+ M ++ V+K G S +
Sbjct: 573 G-YVLLSNIYATVGRWGYSDKTREAMESRGVKKTAGYSSV 611
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 97/379 (25%), Positives = 171/379 (45%), Gaps = 76/379 (20%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFIS-HVYVATSLLHEY 61
L+S M R V D + LH++K+ + L+ + +H HI+ G +S Y+ SL+ Y
Sbjct: 119 LYSSMIRYRVSPDRQTFLHLMKASSF---LSEVKQIHCHIIVSGCLSLGNYLWNSLVKFY 175
Query: 62 V-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ + S GFA K+F +P+ + ++N MI GY+K G EA
Sbjct: 176 MELGSLGFAEKVFAIMPQPDVSSFNVMIVGYAKQGFGLEA-------------------- 215
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
L+L+ +M+S+ G+ PD+ T+ +L C HL + L GK HG+I +
Sbjct: 216 -----------LELYYKMVSD-GIEPDEYTLLGLLVCCGHLSDIRL--GKGVHGWIERRG 261
Query: 181 --WELNEQIATILVDMYAKC--------------------------GFLKYALM-----V 207
+ N + L+DMY KC GF++ M V
Sbjct: 262 PVYSSNLILRNALLDMYFKCKESGLAKRAFDALKKKDMRSWNTMVVGFVRLGDMEAAQAV 321
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALS--LFEMMQATGVKPNEMTFTGVLTACVHTG 265
F+ M +R+++SW +L+ + +G + A+ +EM+ VKP+ +T +++ + G
Sbjct: 322 FDQMPQRDLVSWNSLLFCYSKKGCDQRAVRELFYEMLIVEKVKPDRVTMVSLISGAANNG 381
Query: 266 LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSF 325
+ GR + + LE ++D++ K G +E A+ V +T E +V +W S
Sbjct: 382 ELSHGR-WVHGLMIRLQLEGDAFLSSALIDMYCKCGLIERAFMVFKTAT-EKDVPLWTSM 439
Query: 326 LAACKEHKQFDMAERVIKQ 344
+ H A ++ K+
Sbjct: 440 ITGFAFHGYGQQALQLFKR 458
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 107/268 (39%), Gaps = 51/268 (19%)
Query: 13 PSDSFSILH----ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT---S 65
P S + H +L++C+ N + + I++ I + + L+ +T +
Sbjct: 26 PVQSLQLNHQSLVLLENCSSRNQFK---QVLAQIMRFNLIGVTFPMSRLIFFSAITYPEN 82
Query: 66 FGFARKLF-DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLN 124
A+ LF D P N +NTMI S S N C
Sbjct: 83 LDLAKLLFLDFTPNPNVFVYNTMISAVSSSKNEC-------------------------- 116
Query: 125 AGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG-FIVKNEWEL 183
L+ MI ++PD+ T ++ S L V K H IV L
Sbjct: 117 -------FGLYSSMIRYR-VSPDRQTFLHLMKASSFLSEV-----KQIHCHIIVSGCLSL 163
Query: 184 NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQ 243
+ LV Y + G L +A VF +M + +V S+ +I G A +G+ +AL L+ M
Sbjct: 164 GNYLWNSLVKFYMELGSLGFAEKVFAIMPQPDVSSFNVMIVGYAKQGFGLEALELYYKMV 223
Query: 244 ATGVKPNEMTFTGVLTACVHTGLVDEGR 271
+ G++P+E T G+L C H + G+
Sbjct: 224 SDGIEPDEYTLLGLLVCCGHLSDIRLGK 251
>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 705
Score = 254 bits (649), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 141/404 (34%), Positives = 226/404 (55%), Gaps = 13/404 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLG-FISHVYVATSLLH 59
+++F +M + D ++ + +C + + +H+ ++K + + + + +L+
Sbjct: 237 LEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVD 296
Query: 60 EYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y AR +FD +P R+ V+ +M+ GY+K+ +V AR F M RNV SW+A+
Sbjct: 297 MYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNAL 356
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH----- 173
IA Y G + ++LF ++ E + P T G +L+ C++L + L G+ AH
Sbjct: 357 IAGYTQNGENEEAVRLFL-LLKRESIWPTHYTFGNLLNACANLADLKL--GRQAHTHILK 413
Query: 174 -GFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
GF K+ + + + L+DMY KCG ++ +VFE M ER+ +SW A+I G A GY
Sbjct: 414 HGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYG 473
Query: 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC 292
+AL +F M +G +P+ +T GVL+AC H GLV+EGR YF+ + E+ L P HY C
Sbjct: 474 TEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTC 533
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE 352
MVDL G+AG L+EA +I+TM +EP+ ++WGS LAACK H + + V ++ L + P
Sbjct: 534 MVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHGNITLGKYVAERLLE-IDPL 592
Query: 353 NDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
N G + L+ ++Y +W+ RVRK M V K G S IS
Sbjct: 593 N-SGPYVLLSNMYAELGRWKDVVRVRKQMRQMGVIKQPGCSWIS 635
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 153/306 (50%), Gaps = 4/306 (1%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSF-GFARKLF 73
DS +L +C ++ +H+ I+K F S +++ L+ Y F ARK+F
Sbjct: 18 DSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVF 77
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
D + +RN +WN ++ +K G + EA + F+ MP R+ SW+AM++ + ++ L+
Sbjct: 78 DHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALR 137
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
+M S E ++ + G+ LS C+ G + L +G HG I K+ + L+ + + LVD
Sbjct: 138 FVVDMHS-EDFVLNEYSFGSALSACA--GLMDLSIGVQIHGLIAKSRYSLDVYMGSALVD 194
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
MY+KC + A F+ M+ RN++SW +LI G + AL +F M G++P+E+T
Sbjct: 195 MYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEIT 254
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
V +AC + EG + + + + +VD++ K + EA V M
Sbjct: 255 LASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRM 314
Query: 314 RLEPNV 319
L V
Sbjct: 315 PLRDVV 320
>gi|357501421|ref|XP_003620999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124365545|gb|ABN09779.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355496014|gb|AES77217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 601
Score = 254 bits (649), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 134/328 (40%), Positives = 202/328 (61%), Gaps = 5/328 (1%)
Query: 68 FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
AR LFD++ +N ++W +M+ GYS+ G+V EAR F+ MP +NV SW+AMI Y G
Sbjct: 238 LARDLFDKMRVKNVISWTSMVHGYSEDGDVDEARFLFDCMPEKNVLSWNAMIRGYCQNGR 297
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
LKLF EM N + +++T+ +VL + L ++ L G HGF+ +N+ + + +
Sbjct: 298 SHDALKLFCEMRGNVDVEMNEVTVVSVLPAVADLSALDL--GGWVHGFVQRNQLDGSVHV 355
Query: 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
LVDMYAKCG + A +VFE M E++ SW ALI G G +++AL +F MM G
Sbjct: 356 CNALVDMYAKCGEIGKAKLVFEEMTEKDTGSWNALINGYGVNGCAKEALEVFAMMLREGF 415
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
+PN++T T VL+AC H GLV+EGR+ F+ + E + + P+I+HYGCM+DL G+AG L+EA
Sbjct: 416 EPNQITMTSVLSACNHCGLVEEGRRCFEAM-ERFGIVPQIEHYGCMIDLLGRAGRLDEAE 474
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM 367
++I+ M +PN II SFL AC + AER++K A++M K G + ++ +LY
Sbjct: 475 KLIQAMPYDPNEIILTSFLFACCYFEDVSRAERILKVAVKMEKE--GAGDYVMLRNLYAT 532
Query: 368 NEKWEGAERVRKLMLNQNVRKARGSSVI 395
+W E V+++M + K SVI
Sbjct: 533 ERRWADVEDVKEMMKKRGSNKEVAWSVI 560
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 92/329 (27%), Positives = 137/329 (41%), Gaps = 51/329 (15%)
Query: 3 LFSQMHRQSV--PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
L++Q + PS S++ ILK C+ + +H +LK F +YV TSL+
Sbjct: 109 LYNQFSKDCFFRPS-SYTFTLILKGCSVSDAKRQGFQIHGVVLKNWFCLDLYVGTSLVDM 167
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
YV K G+V AR F+ M +R++ SW+A+I
Sbjct: 168 YV------------------------------KFGDVGFARKVFDEMSVRSLVSWTAVIV 197
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN- 179
Y G KLF M+ + + M G V G L L K VKN
Sbjct: 198 GYARCGDMVEARKLFDGMVDRDVAAFNVMIDGYVKMGRMDLARD--LFDKMR----VKNV 251
Query: 180 -EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
W T +V Y++ G + A +F+ M E+NV+SW A+I G G S DAL L
Sbjct: 252 ISW-------TSMVHGYSEDGDVDEARFLFDCMPEKNVLSWNAMIRGYCQNGRSHDALKL 304
Query: 239 F-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
F EM V+ NE+T VL A +D G + + L+ + +VD++
Sbjct: 305 FCEMRGNVDVEMNEVTVVSVLPAVADLSALDLGGWVHGFV-QRNQLDGSVHVCNALVDMY 363
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
K G + +A V M E + W + +
Sbjct: 364 AKCGEIGKAKLVFEEM-TEKDTGSWNALI 391
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 110/243 (45%), Gaps = 15/243 (6%)
Query: 97 VCEARDFFERMPLRNVASW--SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAV 154
V AR FF P + + +I A+ + ++ G L+ + + P T +
Sbjct: 70 VQHARLFFNHTPPHKCDEFLCNTIINAHFSLRQFNHGFTLYNQFSKDCFFRPSSYTFTLI 129
Query: 155 LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER 214
L GCS S G HG ++KN + L+ + T LVDMY K G + +A VF+ M R
Sbjct: 130 LKGCS--VSDAKRQGFQIHGVVLKNWFCLDLYVGTSLVDMYVKFGDVGFARKVFDEMSVR 187
Query: 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF 274
+++SWTA+I G A G +A LF+ M V + F ++ V G +D R F
Sbjct: 188 SLVSWTAVIVGYARCGDMVEARKLFDGM----VDRDVAAFNVMIDGYVKMGRMDLARDLF 243
Query: 275 KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA-CKEHK 333
+ + + + MV + + G ++EA + M E NV+ W + + C+ +
Sbjct: 244 DKMRVK-----NVISWTSMVHGYSEDGDVDEARFLFDCMP-EKNVLSWNAMIRGYCQNGR 297
Query: 334 QFD 336
D
Sbjct: 298 SHD 300
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/282 (20%), Positives = 103/282 (36%), Gaps = 78/282 (27%)
Query: 1 MQLFSQMHRQ-SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
++LF +M V + +++ +L + + L + +H + + V+V +L+
Sbjct: 302 LKLFCEMRGNVDVEMNEVTVVSVLPAVADLSALDLGGWVHGFVQRNQLDGSVHVCNALVD 361
Query: 60 EYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y G A+ +F+E+ E++ +WN +I GY +G EA + F
Sbjct: 362 MYAKCGEIGKAKLVFEEMTEKDTGSWNALINGYGVNGCAKEALEVF-------------- 407
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
M+ EG P+Q+T+ +VLS C+H
Sbjct: 408 ------------------AMMLREGFEPNQITMTSVLSACNH------------------ 431
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVIS----WTALICGSAHRGYSED 234
CG ++ FE ME ++ + +I G ++
Sbjct: 432 -------------------CGLVEEGRRCFEAMERFGIVPQIEHYGCMIDLLGRAGRLDE 472
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKM 276
A L +QA PNE+ T L AC + V + K+
Sbjct: 473 AEKL---IQAMPYDPNEIILTSFLFACCYFEDVSRAERILKV 511
>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 607
Score = 254 bits (648), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 142/396 (35%), Positives = 221/396 (55%), Gaps = 10/396 (2%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+S M + V ++F+ ++++C LH+H+LK GF Y +L+H Y
Sbjct: 90 FYSHMLQHCVTPNAFTFPSLIRACKLEEEAK---QLHAHVLKFGFGGDTYALNNLIHVYF 146
Query: 63 V-TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR-NVASWSAMIA 120
S AR++F + + N V+W +++ GYS+ G V EA FE MP + N SW+AMIA
Sbjct: 147 AFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIA 206
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
++ + LFR M + + D+ +LS C+ +G+ L G H ++ K
Sbjct: 207 CFVKGNRFREAFALFRRMRVEKKMELDRFVAATMLSACTGVGA--LEQGMWIHKYVEKTG 264
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF- 239
L+ ++AT ++DMY KCG L A VF ++ + V SW +I G A G EDA+ LF
Sbjct: 265 IVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFK 324
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
EM + V P+ +TF VLTAC H+GLV+EG YF+ + + + ++P +HYGCMVDL +
Sbjct: 325 EMEEEAMVAPDSITFVNVLTACAHSGLVEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLAR 384
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG LEEA +VI M + P+ + G+ L AC+ H ++ E V + + + PEN G +
Sbjct: 385 AGRLEEAKKVIDEMPMSPDAAVLGALLGACRIHGNLELGEEVGNRVIEL-DPENSGR-YV 442
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++ ++Y KWE VRKLM ++ V+K G S+I
Sbjct: 443 ILGNMYASCGKWEQVAGVRKLMDDRGVKKEPGFSMI 478
>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 633
Score = 254 bits (648), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 141/406 (34%), Positives = 228/406 (56%), Gaps = 19/406 (4%)
Query: 1 MQLFSQM--HRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL 58
+ L S+M R + + ++ L +C L V LH + +KL YVAT+LL
Sbjct: 107 LALLSEMLLSRHGLLPTAHTLSASLPAC---GCLAVGRALHGYAVKLALSGEPYVATALL 163
Query: 59 HEYVVTSFGFARK-LFDEL-PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
Y A + LFD + P+ + V+ M+ Y+K G + +AR F+ +P +++ W+
Sbjct: 164 GMYARAGEAAAARALFDGMRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWN 223
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
AM+ Y G L+LFR+M+ + G+ PD++++ LS + LG+ G+ H F+
Sbjct: 224 AMMDGYTQHGRPSEALRLFRQMLRS-GVEPDEVSVVLALSAVAQLGTAE--SGRWLHSFV 280
Query: 177 V----KNEWELNEQIATILVDMYAKCGFLKYALMVFELME---ERNVISWTALICGSAHR 229
+ LN ++ T LVDMY KCG L+ A+ VF + +R+V++W A+I G A
Sbjct: 281 ANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMH 340
Query: 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQH 289
G S +AL F ++A G+ P ++TF GVL AC H+GLVDEGR F ++EEY + P+++H
Sbjct: 341 GRSREALEAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEH 400
Query: 290 YGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349
YGCMVDL G+AG +EEA++++++M+ +P+ +W S L AC+ HK + +RV +
Sbjct: 401 YGCMVDLLGRAGRVEEAFDLVQSMKAKPDAAMWASLLGACRLHKNLALGQRVADYLVG-- 458
Query: 350 KPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ G + L+ ++Y KW RVR +M V+K G S +
Sbjct: 459 NGLANSGTYVLLSNMYAAAGKWREVGRVRSMMRASGVQKEPGCSAV 504
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 115/278 (41%), Gaps = 47/278 (16%)
Query: 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM-ISNEGLTPD 147
+ Y+ SG + A R P +++ I A+ + G + L L EM +S GL P
Sbjct: 64 RAYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLHRAALALLSEMLLSRHGLLPT 123
Query: 148 QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDM------------- 194
T+ A L C L +G++ HG+ VK +AT L+ M
Sbjct: 124 AHTLSASLPACGCLA-----VGRALHGYAVKLALSGEPYVATALLGMYARAGEAAAARAL 178
Query: 195 -------------------YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
YAK G L A +F+ + ++++ W A++ G G +A
Sbjct: 179 FDGMRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEA 238
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE-----EYDLEPRIQHY 290
L LF M +GV+P+E++ L+A G + GR + L R+
Sbjct: 239 LRLFRQMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVGT- 297
Query: 291 GCMVDLFGKAGFLEEAYEVIRTM--RLEPNVIIWGSFL 326
+VD++ K G LEEA V R + + +V+ W + +
Sbjct: 298 -ALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMI 334
>gi|186478293|ref|NP_172391.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099767|sp|O80488.1|PPR23_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09190
gi|3249103|gb|AAC24086.1| Contains similarity to membrane-associated salt-inducible protein
homolog TM021B04.10 gb|2191192 from A. thaliana BAC
gb|AF007271 [Arabidopsis thaliana]
gi|28393182|gb|AAO42022.1| unknown protein [Arabidopsis thaliana]
gi|332190289|gb|AEE28410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 484
Score = 254 bits (648), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 146/405 (36%), Positives = 221/405 (54%), Gaps = 12/405 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ FS M + + +D ++ +LKSC+ ++L +H +++ GF + ++
Sbjct: 87 LSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFGKCVHGELIRTGFHRLGKIRIGVVEL 146
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y G A+K+FDE+ ERN V WN MI+G+ SG+V F++M R++ SW++MI
Sbjct: 147 YTSGGRMGDAQKVFDEMSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMI 206
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
++ G L+LF EMI ++G PD+ T+ VL + LG L GK H
Sbjct: 207 SSLSKCGRDREALELFCEMI-DQGFDPDEATVVTVLPISASLGV--LDTGKWIHS--TAE 261
Query: 180 EWELNEQIATI---LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
L + T+ LVD Y K G L+ A +F M+ RNV+SW LI GSA G E +
Sbjct: 262 SSGLFKDFITVGNALVDFYCKSGDLEAATAIFRKMQRRNVVSWNTLISGSAVNGKGEFGI 321
Query: 237 SLFEMMQATG-VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
LF+ M G V PNE TF GVL C +TG V+ G + F ++ E + LE R +HYG MVD
Sbjct: 322 DLFDAMIEEGKVAPNEATFLGVLACCSYTGQVERGEELFGLMMERFKLEARTEHYGAMVD 381
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
L ++G + EA++ ++ M + N +WGS L+AC+ H +AE V L ++P N G
Sbjct: 382 LMSRSGRITEAFKFLKNMPVNANAAMWGSLLSACRSHGDVKLAE-VAAMELVKIEPGNSG 440
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLSV 400
+ L+ +LY +W+ E+VR LM +RK+ G S I +SV
Sbjct: 441 N-YVLLSNLYAEEGRWQDVEKVRTLMKKNRLRKSTGQSTICDVSV 484
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 90/371 (24%), Positives = 161/371 (43%), Gaps = 23/371 (6%)
Query: 30 NNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG------FARKLFDELPERNAVT 83
N T + +H+H+L+ H ++LL + ++ G +A ++F + N +
Sbjct: 15 NTRTRLPEIHAHLLR-----HFLHGSNLLLAHFISICGSLSNSDYANRVFSHIQNPNVLV 69
Query: 84 WNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEG 143
+N MIK YS G E+ FF M R + + A L + + L+ F + + E
Sbjct: 70 FNAMIKCYSLVGPPLESLSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLR-FGKCVHGEL 128
Query: 144 LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKY 203
+ +G + G L + G MG + F E N + +++ + G ++
Sbjct: 129 IRTGFHRLGKIRIGVVELYTSGGRMGDAQKVF--DEMSERNVVVWNLMIRGFCDSGDVER 186
Query: 204 ALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263
L +F+ M ER+++SW ++I + G +AL LF M G P+E T VL
Sbjct: 187 GLHLFKQMSERSIVSWNSMISSLSKCGRDREALELFCEMIDQGFDPDEATVVTVLPISAS 246
Query: 264 TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWG 323
G++D G+ + + I +VD + K+G LE A + R M+ NV+ W
Sbjct: 247 LGVLDTGKWIHSTAESSGLFKDFITVGNALVDFYCKSGDLEAATAIFRKMQ-RRNVVSWN 305
Query: 324 SFLAAC----KEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRK 379
+ ++ K D+ + +I++ V P + L C YT + E E +
Sbjct: 306 TLISGSAVNGKGEFGIDLFDAMIEEG--KVAPNEATFLGVLACCSYT--GQVERGEELFG 361
Query: 380 LMLNQNVRKAR 390
LM+ + +AR
Sbjct: 362 LMMERFKLEAR 372
>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 254 bits (648), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 129/394 (32%), Positives = 227/394 (57%), Gaps = 42/394 (10%)
Query: 7 MHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSF 66
+ R+ +P + F+ +LK+C NL + +H ++K GF V V +L+H Y
Sbjct: 2 LERKKLP-NKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRG 60
Query: 67 G-----FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
G FARK+FDE+ + ++V SWSAMI
Sbjct: 61 GEGGIEFARKVFDEMYKSDSV-------------------------------SWSAMIGG 89
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ G + LFREM +G+ PD++T+ +VLS C+ LG+ L +GK ++ K
Sbjct: 90 YVRVGRSSDAINLFREM-QIKGVCPDEITMVSVLSACTGLGA--LELGKWVESYVEKERV 146
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ N +++ L+DM+AKCG + A +F M ERN++SWT++I G A G +A+++FE
Sbjct: 147 QKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMHGRGVEAVAVFEE 206
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M +GV P+++ F G+L+AC H+GLVD+G++YF + +++ + P+I+HYGCMVD+ +AG
Sbjct: 207 MVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVPKIEHYGCMVDMLCRAG 266
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
++EA + ++ M ++PN ++W + + AC+ H + + E++ +Q +R +P ++ + L+
Sbjct: 267 LVKEALKFVQEMPIDPNPVVWRTLINACRAHGELKLGEKITRQLIRN-EPMHESN-YVLL 324
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y WE R+R+ M + ++K GS++I
Sbjct: 325 SNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTMI 358
>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
Length = 697
Score = 254 bits (648), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 131/370 (35%), Positives = 208/370 (56%), Gaps = 48/370 (12%)
Query: 69 ARKLFDELPERNAVTWNTMIKGY------------------------------------- 91
ARKLFDEL +R+ ++WN+MI GY
Sbjct: 204 ARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNN 263
Query: 92 ------SKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLT 145
SKSGN+ A FE M R+V SW++MIA Y G D ++LF EM E L
Sbjct: 264 CLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEM-EKEDLF 322
Query: 146 PDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYAL 205
P+ +T+ +L C+ L + L G+ HG I++N + L+ +A LVDMY KCG L A
Sbjct: 323 PNSITMACILPACASLAA--LERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLAR 380
Query: 206 MVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG 265
++F+++ E++++SWT +I G GY +A++ F M+ +G++P+E++F +L AC H+G
Sbjct: 381 LLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSG 440
Query: 266 LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSF 325
L+DEG +F M+ +EP+ +HY C+VDL +AG L +AY+ I+ M +EP+ IWG+
Sbjct: 441 LLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGAL 500
Query: 326 LAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQN 385
L C+ + +AE+V + + +PEN G + L+ ++Y EKWE +++R+ + +
Sbjct: 501 LCGCRIYHDVKLAEKVAEHVFEL-EPENT-GYYVLLANIYAEAEKWEEVKKLRERIGRRG 558
Query: 386 VRKARGSSVI 395
+RK G S I
Sbjct: 559 LRKNPGCSWI 568
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 90/352 (25%), Positives = 159/352 (45%), Gaps = 55/352 (15%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
M+L +Q + + ++ +L+ C ++ +HS I + + L+
Sbjct: 88 MELINQSPKPDLELRTYC--SVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFM 145
Query: 61 YVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCE------------------AR 101
YV R++FD++ WN ++ GY+K GN E AR
Sbjct: 146 YVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESAR 205
Query: 102 DFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHL 161
F+ + R+V SW++MI+ Y++ G + GL LF +M+ G+ D T+ +V
Sbjct: 206 KLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLL-LGINTDLATMVSV------- 257
Query: 162 GSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTA 221
E LN L+DMY+K G L A+ VFE M ER+V+SWT+
Sbjct: 258 ------------------ELTLN----NCLLDMYSKSGNLNSAIQVFETMGERSVVSWTS 295
Query: 222 LICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEE 280
+I G A G S+ ++ LF M+ + PN +T +L AC ++ G++ + ++
Sbjct: 296 MIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNG 355
Query: 281 YDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
+ L+ + + +VD++ K G L A ++ M E +++ W +A H
Sbjct: 356 FSLDRHVAN--ALVDMYLKCGALGLA-RLLFDMIPEKDLVSWTVMIAGYGMH 404
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 106/231 (45%), Gaps = 43/231 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF +M ++ + +S ++ IL +C L +H HIL+ GF +VA +L+
Sbjct: 310 VRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDM 369
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y+ + G AR LFD +PE++ V+W MI GY G EA I
Sbjct: 370 YLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEA------------------I 411
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF--IV 177
AA F EM N G+ PD+++ ++L CSH G + GF ++
Sbjct: 412 AA-------------FNEM-RNSGIEPDEVSFISILYACSHSGLL-----DEGWGFFNMM 452
Query: 178 KNEW--ELNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALICG 225
+N E + +VD+ A+ G L A ++M E + W AL+CG
Sbjct: 453 RNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCG 503
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 103/227 (45%), Gaps = 26/227 (11%)
Query: 141 NEGLTPDQ--MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198
N+ PD T +VL C+ L S+ G+ H I N+ E++ + + LV MY C
Sbjct: 92 NQSPKPDLELRTYCSVLQLCADLKSIQ--DGRRIHSIIQSNDVEVDGVLGSKLVFMYVTC 149
Query: 199 GFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE------- 251
G L+ +F+ + V W L+ G A G ++LSLF+ M+ G++ E
Sbjct: 150 GDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFD 209
Query: 252 -------MTFTGVLTACVHTGLVDEGRKYFKMI-------DEEYDLEPRIQHYGCMVDLF 297
+++ +++ V GL ++G F+ + D + + C++D++
Sbjct: 210 ELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMY 269
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
K+G L A +V TM E +V+ W S +A DM+ R+ +
Sbjct: 270 SKSGNLNSAIQVFETMG-ERSVVSWTSMIAGYAREGLSDMSVRLFHE 315
>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
Length = 803
Score = 253 bits (647), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 131/398 (32%), Positives = 230/398 (57%), Gaps = 10/398 (2%)
Query: 1 MQLFSQM-HRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
++ FS+M S+ D F++ +L +C + L + +HS+IL+ G + +L+
Sbjct: 280 LKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALIS 339
Query: 60 EYVVT-SFGFARKLFDE--LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
Y + S AR++ D+ + + N +++ +++GY K G+ +AR+ F+ M R+V +W+
Sbjct: 340 TYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWT 399
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
AMI Y G D ++LFR MI + G P+ T+ AVLS C+ L +G GK H
Sbjct: 400 AMIVGYEQNGQNDEAMELFRSMIRS-GPEPNSHTLAAVLSACASLAYLGY--GKQIHCRA 456
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVF-ELMEERNVISWTALICGSAHRGYSEDA 235
+++ E + ++ ++ +YA+ G + A VF ++ + ++WT++I A G E A
Sbjct: 457 IRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQA 516
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
+ LFE M GVKP+ +T+ GV +AC H G +D+G++Y++ + E+ + P + HY CMVD
Sbjct: 517 IVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVD 576
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
L +AG L EA+E I+ M + P+ ++WGS LAAC+ K D+AE + + L + P+N G
Sbjct: 577 LLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAE-LAAEKLLSIDPDNSG 635
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
++ + ++Y+ +W A R+ KL ++ V+K G S
Sbjct: 636 A-YSALANVYSACGRWNDAARIWKLRKDKAVKKETGFS 672
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 109/396 (27%), Positives = 182/396 (45%), Gaps = 40/396 (10%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++ F M + + F + ++L SC + +HS ++KLG S V VA S+L+
Sbjct: 148 VKTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYM 207
Query: 61 Y-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y AR +F+ + R+ +WN M+ Y+ G + A FE M R++ SW+A+I
Sbjct: 208 YGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAII 267
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A Y G D LK F M++ + PD+ T+ +VLS C++L L MGK H +I++
Sbjct: 268 AGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRM--LKMGKQMHSYILRT 325
Query: 180 EWELNEQIATILVDMYAKCGFL---------------------------------KYALM 206
+ QI L+ YAK G + K A
Sbjct: 326 GMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQARE 385
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
VF++M R+VI+WTA+I G G +++A+ LF M +G +PN T VL+AC
Sbjct: 386 VFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAY 445
Query: 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
+ G++ E + ++ ++ ++G + A V + + W S +
Sbjct: 446 LGYGKQIHCRAIRSLQ-EQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMI 504
Query: 327 AACKEHKQFDMAERVIKQALRM-VKPENDG--GVFT 359
A +H + A + ++ LR+ VKP+ GVF+
Sbjct: 505 VALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFS 540
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 161/329 (48%), Gaps = 44/329 (13%)
Query: 38 LHSHILKLGFISHVYVATSLLHEYVVTSFGF-----ARKLFDELP--ERNAVTWNTMIKG 90
+H+H +K G + Y+ +LL Y G AR+LFD++P RNA TWN+++
Sbjct: 47 IHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLFDDIPYARRNAFTWNSLLSM 106
Query: 91 YSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMT 150
Y+KSG + +AR F +MP R+ SW+ M+ AG + +K F +M+ EGL P Q
Sbjct: 107 YAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMV-GEGLAPSQFM 165
Query: 151 IGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC------------ 198
+ VLS C+ + G+ G+ H F++K +A ++ MY KC
Sbjct: 166 LTNVLSSCAATEARGI--GRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFER 223
Query: 199 -------------------GFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
G + AL +FE MEER+++SW A+I G G + AL F
Sbjct: 224 MKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFF 283
Query: 240 -EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
M+ A+ ++P+E T T VL+AC + ++ G++ I + Q ++ +
Sbjct: 284 SRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYI-LRTGMPYSSQIMNALISTYA 342
Query: 299 KAGFLEEAYEVI-RTMRLEPNVIIWGSFL 326
K+G +E A ++ + + + NVI + + L
Sbjct: 343 KSGSVETARRIMDKAVVADLNVISFTALL 371
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 2/148 (1%)
Query: 191 LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250
L+ MYAK G L A +VF M ER+ +SWT ++ G G DA+ F M G+ P+
Sbjct: 103 LLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPS 162
Query: 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI 310
+ T VL++C T GRK + + L + ++ ++GK G E A V
Sbjct: 163 QFMLTNVLSSCAATEARGIGRKVHSFV-IKLGLSSCVPVANSVLYMYGKCGDAETARAVF 221
Query: 311 RTMRLEPNVIIWGSFLAACKEHKQFDMA 338
M++ W + ++ + D+A
Sbjct: 222 ERMKVRSES-SWNAMVSLYTHQGRMDLA 248
>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 253 bits (647), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 137/390 (35%), Positives = 222/390 (56%), Gaps = 9/390 (2%)
Query: 10 QSVPSDSFSILHILKSCTHFNNLTVI--HHLHSHILKLGFISHVYVATSLLHEYVVTSF- 66
+ + D F ++K+C + ++ V LH+ L F V +SL+ Y
Sbjct: 103 EGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDDVVKSSLVDMYAKFELP 162
Query: 67 GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAG 126
+ R +FD + E ++++W MI GY++SG EA + F P +N+ +W+A+I+ + +G
Sbjct: 163 DYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELFRESPFKNLYAWTALISGLVQSG 222
Query: 127 AYDPGLKLFREMISNEGLT-PDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
+ L LF EM EG++ D + + +V+ C++ S +GK H ++ +E
Sbjct: 223 NANDALYLFVEM-RREGVSIADPLVLSSVVGACAN--SAVRELGKQVHCVVITLGYESCL 279
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
I+ LVDMYAKC + A +F M ++V+SWT++I G+A G +E+AL+L++ M
Sbjct: 280 FISNALVDMYAKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQHGLAEEALTLYDDMVLA 339
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305
GVKPNE+TF G++ AC H GLV +GR FK + E++ + P +QHY C++DLF ++G L+E
Sbjct: 340 GVKPNEVTFVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQHYTCLLDLFSRSGHLDE 399
Query: 306 AYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365
A +IRTM ++P+ W + L+ACK H MA R+ L + KPE D + L+ ++Y
Sbjct: 400 AENLIRTMPVKPDEPTWAALLSACKHHGNTKMAVRIADHLLDL-KPE-DPSSYILLSNIY 457
Query: 366 TMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
WE VRKLM + V+K G S +
Sbjct: 458 AGAGMWENVSMVRKLMAVKEVKKVPGYSCV 487
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 129/285 (45%), Gaps = 45/285 (15%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA----YLNAGAYDPGLKLFREMIS 140
T+I Y K G + +A F+ +P ++ +W+ +++A L A+ L +
Sbjct: 47 KTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACNLSNLPHKAFSISLPIL----- 101
Query: 141 NEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGF 200
+EGL PD +++ C++LGSV + +GK H + + + ++ + + LVDMYAK
Sbjct: 102 HEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDDVVKSSLVDMYAKFEL 161
Query: 201 LKYALMVFELMEERNVISWTALICGSA-------------------------------HR 229
Y VF+ + E + ISWTA+I G A
Sbjct: 162 PDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELFRESPFKNLYAWTALISGLVQS 221
Query: 230 GYSEDALSLFEMMQATGVK-PNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRI 287
G + DAL LF M+ GV + + + V+ AC ++ + + G++ + +I Y+ I
Sbjct: 222 GNANDALYLFVEMRREGVSIADPLVLSSVVGACANSAVRELGKQVHCVVITLGYESCLFI 281
Query: 288 QHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
+ +VD++ K + A + MR +V+ W S + +H
Sbjct: 282 SN--ALVDMYAKCSDVVAAKYIFCEMR-RKDVVSWTSIIVGTAQH 323
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 80/182 (43%), Gaps = 6/182 (3%)
Query: 150 TIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFE 209
T+ A+ S LG + K H I+K+ + L+D Y KCG LK AL +F+
Sbjct: 8 TVLALKSQLFSLGRKNPFIAKKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFD 67
Query: 210 LMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
+ +++ ++W ++ A S+ + G++P+ F+ ++ AC + G V
Sbjct: 68 ALPQQDHVAWATVLSACNLSNLPHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSVHV 127
Query: 270 GRKYFKMIDEEYDLEPRIQH---YGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
K K + + L P + +VD++ K + V ++ E + I W + +
Sbjct: 128 --KLGKQLHARFLLSPFFEDDVVKSSLVDMYAKFELPDYGRAVFDSI-FELSSISWTAMI 184
Query: 327 AA 328
+
Sbjct: 185 SG 186
>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
Length = 613
Score = 253 bits (647), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 141/392 (35%), Positives = 227/392 (57%), Gaps = 21/392 (5%)
Query: 11 SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG--- 67
SV + F+ + K+C L +H +K G S +V ++++ Y+
Sbjct: 84 SVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDA 143
Query: 68 ---FARKLF----DELPER------NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVAS 114
F R++F D + ++ + V WN MI GY + G + AR+ F+ MP R+V S
Sbjct: 144 HRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVS 203
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
W+ MIA Y +G + +++FREM E + P+ +T+ +VL S LG+ L +GK H
Sbjct: 204 WNVMIAGYAQSGHFKEAVEVFREMQMAE-VPPNYVTLVSVLPAMSRLGA--LELGKWVHL 260
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
+ V+N +++ + + L+DMYAKCG ++ AL VFE + +RNV++W+ +I G A G ++D
Sbjct: 261 YAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKD 320
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
L FE M+ GV P+++T+ G+L+AC H GLV+EGR +F + LEPRI+HYGCMV
Sbjct: 321 TLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMV 380
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
DL G+AG LEE+ E+I M ++P+ +IW + L ACK H +M +RV + + + +D
Sbjct: 381 DLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAP--HD 438
Query: 355 GGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386
G + + ++Y WEG +VR +M +V
Sbjct: 439 SGSYVALSNIYASLGNWEGVAKVRLMMKEMDV 470
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 14/136 (10%)
Query: 201 LKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF-EMMQATGVKPNEMTFTGVLT 259
L YA +F M N S+ LI + DAL +F EM++ V+PN TF V
Sbjct: 38 LDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFK 97
Query: 260 ACVHTGLVDEGRKY------FKMIDEEYDLEPRIQHY---GCMVD---LFGKAGFLEEAY 307
AC + EGR+ F + +E+ + ++ Y G M D LF + F++
Sbjct: 98 ACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCD 157
Query: 308 EV-IRTMRLEPNVIIW 322
+ + R++ +V++W
Sbjct: 158 GIRDKKRRVDGDVVLW 173
>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Vitis vinifera]
Length = 1088
Score = 253 bits (647), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 136/397 (34%), Positives = 225/397 (56%), Gaps = 7/397 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF QM + D FS+ +L SC ++ LH+ I++ + L+
Sbjct: 565 LRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDM 624
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y S +A K++D+ +++ + N M+ + SG +A++ F++M RN A W++++
Sbjct: 625 YAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSIL 684
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A Y N G F EM+ ++ + D +T+ +++ CS L + L G H I+K
Sbjct: 685 AGYANKGLKKESFNHFLEMLESD-IEYDVLTMVTIVNLCSSLPA--LEHGDQLHSLIIKK 741
Query: 180 EW-ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ + + T LVDMY+KCG + A VF+ M +N++SW A+I G + G S++AL L
Sbjct: 742 GFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALIL 801
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
+E M G+ PNE+TF +L+AC HTGLV+EG + F + E+Y++E + +HY CMVDL G
Sbjct: 802 YEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLG 861
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG LE+A E + M +EP V WG+ L AC+ HK DM R+ Q L + P+N G +
Sbjct: 862 RAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMG-RLAAQRLFELDPQNP-GPY 919
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++ ++Y +W+ E +R++M + V+K G S I
Sbjct: 920 VIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWI 956
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 94/353 (26%), Positives = 164/353 (46%), Gaps = 39/353 (11%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+F +M + V D+F+ L+ C + +HS ++ GF +V +L+ Y
Sbjct: 263 IFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYA 322
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
K+FDE+ ERN VTWN++I ++ G+ +A F RM
Sbjct: 323 KCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRM-------------- 368
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
G ++ +G++L + L +G G+ HG +V+N
Sbjct: 369 ------------------QESGYKSNRFNLGSILMASAGLADIG--KGRELHGHLVRNLL 408
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ + + LVDMY+KCG ++ A VF + ERN +S+ AL+ G G +E+AL L+
Sbjct: 409 NSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHD 468
Query: 242 MQA-TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
MQ+ G++P++ TFT +LT C + ++GR+ + ++ I +V ++ +
Sbjct: 469 MQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRA-NITKNIIVETELVHMYSEC 527
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ-ALRMVKPE 352
G L A E+ M E N W S + +++ + A R+ KQ L +KP+
Sbjct: 528 GRLNYAKEIFNRM-AERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPD 579
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 33/307 (10%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF +M S+ F++ IL + ++ LH H+++ S + + ++L
Sbjct: 364 LFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSAL----- 418
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
+ YSK G V EA F + RN S++A++A Y
Sbjct: 419 -------------------------VDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGY 453
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+ G + L+L+ +M S +G+ PDQ T +L+ C++ + G+ H +++
Sbjct: 454 VQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDN--QGRQIHAHLIRANIT 511
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
N + T LV MY++CG L YA +F M ERN SW ++I G G +++AL LF+ M
Sbjct: 512 KNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQM 571
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
Q G+KP+ + + +L++CV +GR+ I E I +VD++ K G
Sbjct: 572 QLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQV-VLVDMYAKCGS 630
Query: 303 LEEAYEV 309
++ A++V
Sbjct: 631 MDYAWKV 637
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 151/328 (46%), Gaps = 35/328 (10%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L+ +M SD F+ ++K+C ++ + L S ++K G +++V +L
Sbjct: 160 LRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGAL--- 216
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ GY++ G + +A + + +V +W+A+IA
Sbjct: 217 ---------------------------VDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIA 249
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y+ +++ +F M+ G+ PD T + L C L S GK H ++
Sbjct: 250 GYVKILSWEEAWGIFDRMLK-IGVCPDNFTFASALRVCGALRSRD--GGKQVHSKLIACG 306
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
++ + + L+DMYAKC + L VF+ M ERN ++W ++I A G+ DAL LF
Sbjct: 307 FKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFL 366
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
MQ +G K N +L A + +GR+ + L I +VD++ K
Sbjct: 367 RMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNL-LNSDIILGSALVDMYSKC 425
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
G +EEA++V R++ LE N + + + LA
Sbjct: 426 GMVEEAHQVFRSL-LERNEVSYNALLAG 452
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 139/322 (43%), Gaps = 42/322 (13%)
Query: 22 ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV----VTSFGFARKLFDELP 77
+++ C N+ +H+ ++ G+ Y+ T +L Y + +ARKLF+E+P
Sbjct: 77 LIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMP 136
Query: 78 ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
ERN WNTMI Y++ + E + RM R ++S
Sbjct: 137 ERNLTAWNTMILAYARVDDYMEVLRLYGRM--RGSGNFS--------------------- 173
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
D+ T +V+ C + +G + + +VK N + LVD YA+
Sbjct: 174 ---------DKFTFPSVIKACIAMEDMGGV--RQLQSSVVKAGLNCNLFVGGALVDGYAR 222
Query: 198 CGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGV 257
G++ A+ + +E +V++W A+I G E+A +F+ M GV P+ TF
Sbjct: 223 FGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASA 282
Query: 258 LTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE 316
L C D G++ + K+I + + + + ++D++ K E +V M E
Sbjct: 283 LRVCGALRSRDGGKQVHSKLIACGFKGDTFVGN--ALIDMYAKCDDEESCLKVFDEMG-E 339
Query: 317 PNVIIWGSFLAACKEHKQFDMA 338
N + W S ++A + F+ A
Sbjct: 340 RNQVTWNSIISAEAQFGHFNDA 361
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 93/190 (48%), Gaps = 8/190 (4%)
Query: 169 GKSAHGFIVKNEWELNEQIATILVDMYAKCGFLK---YALMVFELMEERNVISWTALICG 225
GKS H ++ N + + + T ++ +YA+ G L YA +FE M ERN+ +W +I
Sbjct: 90 GKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILA 149
Query: 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD-EGRKYFKMIDEEYDLE 284
A + L L+ M+ +G ++ TF V+ AC+ + D G + + + L
Sbjct: 150 YARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACI--AMEDMGGVRQLQSSVVKAGLN 207
Query: 285 PRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
+ G +VD + + G++++A + + +V+ W + +A + ++ A + +
Sbjct: 208 CNLFVGGALVDGYARFGWMDDAVTSLDEIE-GTSVVTWNAVIAGYVKILSWEEAWGIFDR 266
Query: 345 ALRM-VKPEN 353
L++ V P+N
Sbjct: 267 MLKIGVCPDN 276
>gi|413933352|gb|AFW67903.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 788
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 139/394 (35%), Positives = 226/394 (57%), Gaps = 7/394 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L+SQM + +L +C +L +H++ LK+G ++++V++SL+
Sbjct: 364 LKLYSQMLADGCRPNISCFSSVLSACATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDM 423
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y +A+++F+ LPE+N V WN++I GYS +G + EA F +MP RN SW+ MI
Sbjct: 424 YCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMI 483
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y + L F M+++ G P ++T+ +VL C++L S L MG+ H IVK
Sbjct: 484 SGYAENRRFGDALNYFYAMLAS-GHIPGEITLSSVLLACANLCS--LEMGRMVHAEIVKL 540
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
E N + T L DMYAK G L + VF M E+N I+WTA++ G A G++E+++SLF
Sbjct: 541 GIEDNIFMGTALCDMYAKSGDLDSSRRVFYQMPEKNNITWTAMVQGLAENGFAEESISLF 600
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
E M G+ PNE TF +L AC H GLV++ YF+ + + + + P+ +HY CMVD+ +
Sbjct: 601 EDMIENGIAPNEHTFLAILFACSHCGLVEQAIHYFETM-QAHGIPPKSKHYTCMVDVLAR 659
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG L EA E++ + E + W S L+AC ++ ++ ER K+ L ++ +N G +
Sbjct: 660 AGCLPEAEELLMKVSSELDTSSWSSLLSACSTYRNKEIGERAAKK-LHELEKDNTAG-YV 717
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
L+ ++Y KW+ A R LM +++K G S
Sbjct: 718 LLSNMYASCGKWKDAAETRILMQGASLKKDAGCS 751
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 136/296 (45%), Gaps = 66/296 (22%)
Query: 32 LTVIHHLHSHILKLGFISHVYVATSLLHEYVV--------------------TSFGF--- 68
L ++ LH+H L+ G + VA++LL Y +SF +
Sbjct: 96 LPLVLSLHAHALRSGLATDRSVASNLLTAYAAFARAGDRDQAFRDCVAADAASSFTYDFM 155
Query: 69 ------------ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
AR+LF +PE++ V++ TM+ K G+V +A + +ER PL +VA ++
Sbjct: 156 VSEHVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFFT 215
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCS-------HLGSVGLL-- 167
AMI+ ++ + +FR+M++ + P+ +T+ V+ C +G VGL
Sbjct: 216 AMISGFVRNELHKDAFTVFRKMLTC-SVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVK 274
Query: 168 --------------------MGKSAHGFIVKNEWELNEQIA-TILVDMYAKCGFLKYALM 206
MG +A V ++ E+ + ++ T L+D+YA G L A
Sbjct: 275 CNLFEKSIEVHNSLITLYLRMGDAAAARRVFDDMEVRDVVSWTALLDVYADLGDLDGARR 334
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACV 262
V + M RN +SW LI +G + +AL L+ M A G +PN F+ VL+AC
Sbjct: 335 VLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACA 390
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 1/154 (0%)
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
T +VD K G ++ A+ ++E +V +TA+I G +DA ++F M V+
Sbjct: 184 TTMVDALMKRGSVRDAVELYERCPLHSVAFFTAMISGFVRNELHKDAFTVFRKMLTCSVR 243
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
PN +T V+ ACV G D + + E I+ + ++ L+ + G A
Sbjct: 244 PNVVTLICVIKACVGAGEFDLAMGVVGLAVKCNLFEKSIEVHNSLITLYLRMGDAAAARR 303
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVI 342
V M + +V+ W + L + D A RV+
Sbjct: 304 VFDDMEVR-DVVSWTALLDVYADLGDLDGARRVL 336
>gi|413943789|gb|AFW76438.1| hypothetical protein ZEAMMB73_890738 [Zea mays]
Length = 529
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 139/398 (34%), Positives = 235/398 (59%), Gaps = 13/398 (3%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L QM D +++ + +C+ +L + +HS++ + F + VA +LL Y
Sbjct: 134 LAVQMESGGATPDRVTLVTAVTACSRAGDLNLGRRIHSYMDGV-FGFSLPVANALLDMY- 191
Query: 63 VTSFGF---ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
T G+ A K+F+++PERN ++W ++ GY +G + +AR FF + +++ W++MI
Sbjct: 192 -TKNGYLEEAVKMFEQMPERNIISWTILVSGYGIAGQLDKARVFFYQCTQKDLILWTSMI 250
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A + G+++ L LFR+M + + PD+ T+ +L+ C+++G+ L G+ H +
Sbjct: 251 NACVQHGSFEEALILFRDM-QLQRVEPDKFTVVTLLTCCANIGA--LDQGEWIHQYAESR 307
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+++ + T L++MY+KCG + +L +F M+ ++ +WTA+ICG A G + AL LF
Sbjct: 308 NMKIDAVLGTALIEMYSKCGHVDKSLQIFGRMQGKDAAAWTAIICGLATNGQASKALELF 367
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
E MQ + KP+ +TF GVL+AC H GLVDEG++YF+ + E Y +EPRI+HY C+V+L G
Sbjct: 368 EEMQRSKTKPDGITFIGVLSACCHGGLVDEGQRYFQAMKEVYHIEPRIEHYSCLVNLLGH 427
Query: 300 AGFLEEAYEVIRTMRLEPNVI-IWGSFLAACKEHKQFDMAERVIKQ-ALRMVKPENDGGV 357
AG L EA ++I M + + + ++G+ L ACK + +M+E + K+ A P D V
Sbjct: 428 AGLLYEAEKLITDMPVNNDTMPLFGALLTACKANGNVEMSEWLTKRIAKEDCSPNPD--V 485
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y +WE A RVR M N V+K G S+I
Sbjct: 486 NVLMSNVYATASRWEEAIRVRSKMTNPAVKKTAGCSMI 523
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 92/398 (23%), Positives = 172/398 (43%), Gaps = 74/398 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
M ++ + + + +DS++ +L++ +H+ +K GF Y A SL+
Sbjct: 31 MAVYYDLRARGLAADSYTYPFVLRAIGTMKLSVEGRKVHAAAVKTGFRWDAYTACSLMEM 90
Query: 61 YVVTSFG-FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + AR++FDE+P+R V WN M++
Sbjct: 91 YTMLGRADSARRVFDEMPQRFLVLWNMMMR------------------------------ 120
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y+ G + + L +M S G TPD++T+ ++ CS G + L G+ H ++
Sbjct: 121 -CYIRCGRFTAAVALAVQMESG-GATPDRVTLVTAVTACSRAGDLNL--GRRIHSYM-DG 175
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICG-------------- 225
+ + +A L+DMY K G+L+ A+ +FE M ERN+ISWT L+ G
Sbjct: 176 VFGFSLPVANALLDMYTKNGYLEEAVKMFEQMPERNIISWTILVSGYGIAGQLDKARVFF 235
Query: 226 -----------------SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
G E+AL LF MQ V+P++ T +LT C + G +D
Sbjct: 236 YQCTQKDLILWTSMINACVQHGSFEEALILFRDMQLQRVEPDKFTVVTLLTCCANIGALD 295
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
+G ++ E +++ +++++ K G ++++ ++ M+ + + W + +
Sbjct: 296 QG-EWIHQYAESRNMKIDAVLGTALIEMYSKCGHVDKSLQIFGRMQGK-DAAAWTAIICG 353
Query: 329 CKEHKQFDMAERVIKQALRMVKPENDG----GVFTLIC 362
+ Q A + ++ R K + DG GV + C
Sbjct: 354 LATNGQASKALELFEEMQR-SKTKPDGITFIGVLSACC 390
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 124/288 (43%), Gaps = 41/288 (14%)
Query: 107 MPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGL 166
MPLR+ + +I G++ + ++ ++ + GL D T VL +G++ L
Sbjct: 9 MPLRDC---NVLIRTLARRGSFSRVMAVYYDLRA-RGLAADSYTYPFVLRA---IGTMKL 61
Query: 167 -LMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICG 225
+ G+ H VK + + A L++MY G A VF+ M +R ++ W ++
Sbjct: 62 SVEGRKVHAAAVKTGFRWDAYTACSLMEMYTMLGRADSARRVFDEMPQRFLVLWNMMMRC 121
Query: 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP 285
G A++L M++ G P+ +T +TAC G ++ GR+ +D +
Sbjct: 122 YIRCGRFTAAVALAVQMESGGATPDRVTLVTAVTACSRAGDLNLGRRIHSYMDGVFGFSL 181
Query: 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTMR------------------------------L 315
+ + ++D++ K G+LEEA ++ M
Sbjct: 182 PVAN--ALLDMYTKNGYLEEAVKMFEQMPERNIISWTILVSGYGIAGQLDKARVFFYQCT 239
Query: 316 EPNVIIWGSFLAACKEHKQFDMAERVIKQ-ALRMVKPENDGGVFTLIC 362
+ ++I+W S + AC +H F+ A + + L+ V+P+ V L C
Sbjct: 240 QKDLILWTSMINACVQHGSFEEALILFRDMQLQRVEPDKFTVVTLLTC 287
>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
[Vitis vinifera]
Length = 612
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/395 (31%), Positives = 222/395 (56%), Gaps = 7/395 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++ +S+ + + + FS +L C + + +H IL GF+S+V +++S+L
Sbjct: 177 LRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDA 236
Query: 61 YVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
YV G ARKLFDE+ R+ + W TM+ GY+K G++ A + F MP +N SW+A+I
Sbjct: 237 YVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALI 296
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y G L+LF +M+ + PDQ T + L C+ + S L GK H ++++
Sbjct: 297 SGYARNGMGHKALELFTKMMLFH-VRPDQFTFSSCLCACASIAS--LKHGKQIHAYLLRI 353
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEER-NVISWTALICGSAHRGYSEDALSL 238
++ N + + L+DMY+KCG L VF+LM + +V+ W +I A G E+A+ +
Sbjct: 354 NFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQM 413
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
+ M +G KP+++TF +L AC H+GLV +G +F+ + +Y + P +HY C++DL G
Sbjct: 414 LDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLG 473
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG EE + + M +P+ +W + L C+ H ++ + ++ + + +P++ +
Sbjct: 474 RAGCFEEVMDQLEKMPYKPDDRVWNALLGVCRIHGHIELGRKAAERLIEL-EPQSSTA-Y 531
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
L+ +Y + +WE ++VR+LM + V+K R S
Sbjct: 532 VLLSSIYAVLGRWESVQKVRQLMNERQVKKERAIS 566
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 99/383 (25%), Positives = 175/383 (45%), Gaps = 38/383 (9%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISH-VYVATSLLHEYV 62
+ R+ + DS ++ +L+ C L +H H+ G +++ L++ Y
Sbjct: 47 LENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGLKRPGTFLSNHLINMYA 106
Query: 63 VTSFGF-ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
ARK+FD++ RN +WN M+ GY+K G + AR F++MP ++V SW+ M+ A
Sbjct: 107 KCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIA 166
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
+ G +D L+ + E G+ + + VL+ C L VGL + HG I+ +
Sbjct: 167 HAQCGYWDEALRFYSE-FRQLGIQCNGFSFAGVLTVCVKLKEVGLT--RQVHGQILVAGF 223
Query: 182 ELNEQIATILVDMYAKCGF-------------------------------LKYALMVFEL 210
N +++ ++D Y KCG +K A +F
Sbjct: 224 LSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVE 283
Query: 211 MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
M E+N +SWTALI G A G AL LF M V+P++ TF+ L AC + G
Sbjct: 284 MPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHG 343
Query: 271 RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330
++ + + +P ++D++ K G L +V M + +V++W + ++A
Sbjct: 344 KQIHAYL-LRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALA 402
Query: 331 EHKQFDMAERVIKQALRM-VKPE 352
+H + A +++ +R KP+
Sbjct: 403 QHGCGEEAIQMLDDMVRSGAKPD 425
>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Brachypodium distachyon]
Length = 544
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 134/343 (39%), Positives = 201/343 (58%), Gaps = 10/343 (2%)
Query: 55 TSLLHEYVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA 113
S++H Y V+ G A++LF+ + VTW +M+ G+ ++G+V AR FE MP R++
Sbjct: 81 NSMIHGYAVSGDVGSAQRLFERVLAPTPVTWTSMVAGFCRAGDVESARRVFEEMPERDLV 140
Query: 114 SWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH 173
SW+AMI+ + L LFR M+ EG P++ T+ +VLS C+ G+ L GK H
Sbjct: 141 SWNAMISGCVGNRLPVEALCLFRWMM-EEGFVPNRGTVVSVLSACT--GAGALETGKWVH 197
Query: 174 GFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE 233
F+ K +E + T LVDMYAKCG ++ AL VF + RN +W A+I G A GYS
Sbjct: 198 VFVEKKRLRWDEFLGTALVDMYAKCGAVELALEVFTGLRARNTCTWNAMINGLAMNGYSA 257
Query: 234 DALSLFEMMQATG-VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC 292
AL +F M+ G V P+E+TF GVL AC H G VD G+++F I ++Y +E ++HY C
Sbjct: 258 KALDMFRQMELNGTVAPDEVTFVGVLLACSHAGFVDAGKEHFYTIPQKYGVELILEHYAC 317
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE 352
MVDL ++G L+EA+++I M ++P+V++W + L C+ HK MAE VI +
Sbjct: 318 MVDLLARSGHLQEAHKLITEMPMKPDVVVWRALLGGCRLHKNVKMAENVISEM-----EA 372
Query: 353 NDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G L+ +LY +W G E VR+ M ++ + K G S +
Sbjct: 373 TCSGDHVLLSNLYAAVGRWNGVEDVRRTMRSKGIEKIPGCSSV 415
>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 599
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 133/389 (34%), Positives = 219/389 (56%), Gaps = 41/389 (10%)
Query: 10 QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILK-LGFISHVYVATSLLHEYVVTSF-G 67
+ V + +++ ++ +C NL + +H +++K + V + +L++ YV +
Sbjct: 201 KEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLD 260
Query: 68 FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
ARKLFDE+PE+N V WN++I GY + G++ E + M L N
Sbjct: 261 GARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSN---------------- 304
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE-WELNEQ 186
L PD+ T+ VLS C+ +G+ L G H F K W++
Sbjct: 305 ----------------LKPDRFTVSGVLSACAQMGAFNL--GNWVHRFAEKKGIWDVF-- 344
Query: 187 IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
I T L+DMYAKCGF+ A VF+ M ERNV +W A++ G A G +E A+ LF M+ +G
Sbjct: 345 IGTALIDMYAKCGFIGAARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRESG 404
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
+P+ +TF VL AC H+GLV+ G++YF ++ + Y + PR++HYGCMVDL G+AG L+EA
Sbjct: 405 ARPDSITFLAVLHACAHSGLVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEA 464
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366
E+I+ M +EPNV++WG+ L+AC H ++ E +++ DGG + ++ +LY
Sbjct: 465 RELIKMMVVEPNVVVWGALLSACSIHGNIEIGEWAAHHMIKL--NAMDGGSYVILANLYA 522
Query: 367 MNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+++ + VR++M+ + + K+ G S+I
Sbjct: 523 SAQRFNRVKAVREMMVEKGICKSHGCSMI 551
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/332 (25%), Positives = 159/332 (47%), Gaps = 40/332 (12%)
Query: 10 QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS-FGF 68
Q++ D ++ + K+C + +H I+++G+ ++ +SLL+ Y+V G
Sbjct: 99 QNILGDKYTYPFVFKACASQFAVEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGN 158
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A+++FDE +A+D V W+A+I Y G
Sbjct: 159 AQQVFDEF----------------------DAKD---------VVFWNALITGYARQGMV 187
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE--Q 186
+F+EM+ + + P++ T+ ++ C + S L +G++ HG+++K + L E +
Sbjct: 188 LDSFGVFKEMVEVKEVRPNEGTMMGLIVAC--IESKNLKLGRAIHGYMMK-DMVLREGVK 244
Query: 187 IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
+ L+++Y KCG+L A +F+ + E+N + W +LICG G + + L M +
Sbjct: 245 LEAALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSN 304
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
+KP+ T +GVL+AC G + G + +++ + I ++D++ K GF+ A
Sbjct: 305 LKPDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGIWDVFIGT--ALIDMYAKCGFIGAA 362
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
+V M E NV W + L+ H Q + A
Sbjct: 363 RKVFDQMN-ERNVATWNAILSGYASHGQAESA 393
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/338 (23%), Positives = 159/338 (47%), Gaps = 40/338 (11%)
Query: 18 SILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV-TSFGFARKLFDEL 76
S+L ++++CT+ L IH S I L + ++ T +++ ++ +A ++F++
Sbjct: 8 SVLALIETCTNIQQLKQIH-AKSIISSLSYTQ--FIITKIINSFLSHACLDYATQVFNQT 64
Query: 77 PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFR 136
E + +N MI+ YS S C A + ++
Sbjct: 65 QEPDGFIYNAMIRAYSSSQTPCVA-------------------------------ISIYN 93
Query: 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA 196
+M + + + D+ T V C+ + GK HG IV+ +EL+ + + L++ Y
Sbjct: 94 KMRACQNILGDKYTYPFVFKACA--SQFAVEKGKEVHGVIVRIGYELDGFLQSSLLNFYM 151
Query: 197 KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF-EMMQATGVKPNEMTFT 255
CG + A VF+ + ++V+ W ALI G A +G D+ +F EM++ V+PNE T
Sbjct: 152 VCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMM 211
Query: 256 GVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRL 315
G++ AC+ + + GR + ++ L ++ +++L+ K G+L+ A ++ +
Sbjct: 212 GLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGARKLFDEIP- 270
Query: 316 EPNVIIWGSFLAA-CKEHKQFDMAERVIKQALRMVKPE 352
E N ++W S + C+ ++ E + + L +KP+
Sbjct: 271 EKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPD 308
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 107/237 (45%), Gaps = 40/237 (16%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L +MH ++ D F++ +L +C + + +H K G I V++ T+L+
Sbjct: 294 IELLREMHLSNLKPDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKG-IWDVFIGTALIDM 352
Query: 61 YVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y F G ARK+FD++ ERN TWN ++ GY+ G
Sbjct: 353 YAKCGFIGAARKVFDQMNERNVATWNAILSGYASHGQA---------------------- 390
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ ++LF EM G PD +T AVL C+H G V GK +++
Sbjct: 391 ---------ESAIELFSEM-RESGARPDSITFLAVLHACAHSGLVE--NGKQYFDLMLQY 438
Query: 180 EWELNEQIA--TILVDMYAKCGFLKYALMVFELM-EERNVISWTALICGSAHRGYSE 233
+++ ++ +VD+ + G L+ A + ++M E NV+ W AL+ + G E
Sbjct: 439 -YKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNVVVWGALLSACSIHGNIE 494
>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Vitis vinifera]
Length = 735
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 129/382 (33%), Positives = 215/382 (56%), Gaps = 34/382 (8%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFD 74
D +++ +L +C+ + ++ +H ++K GF
Sbjct: 260 DPIAMVSVLSACSRVSEKSITEGVHGFLIKRGF--------------------------- 292
Query: 75 ELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKL 134
E + NT++ Y+K G + +R F+ M R+V SW+++IA Y G +++
Sbjct: 293 ---EGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEI 349
Query: 135 FREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDM 194
F M+ + + + +T+ AVL C+H GS L GK H ++K E N + T ++DM
Sbjct: 350 FHRMVKDGEINYNAVTLSAVLLACAHSGSQRL--GKCIHDQVIKMGLESNVFVGTSIIDM 407
Query: 195 YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTF 254
Y KCG ++ A F+ M E+NV SW+A++ G G++++AL +F M GVKPN +TF
Sbjct: 408 YCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITF 467
Query: 255 TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR 314
VL AC H GL++EG +FK + E+D+EP ++HYGCMVDL G+AG+L+EA+++I+ M+
Sbjct: 468 VSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMK 527
Query: 315 LEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGA 374
L P+ ++WG+ L AC+ HK D+ E + + L + P+N G + L+ ++Y +WE
Sbjct: 528 LRPDFVVWGALLGACRMHKNVDLGE-ISARKLFELDPKN-CGYYVLLSNIYADAGRWEDV 585
Query: 375 ERVRKLMLNQNVRKARGSSVIS 396
ER+R LM N + K G S++
Sbjct: 586 ERMRILMKNSGLVKPPGFSLVD 607
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 99/365 (27%), Positives = 163/365 (44%), Gaps = 49/365 (13%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++ FS M + S+ + + +KSC+ +L H L GF ++V+++L
Sbjct: 137 LRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSAL--- 193
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ YSK G + +AR F+ + RN+ SW++MI
Sbjct: 194 ---------------------------VDMYSKCGELRDARTLFDEISHRNIVSWTSMIT 226
Query: 121 AYLNAGAYDPGLKLFREMISNEG-------LTPDQMTIGAVLSGCSHLGSVGLLMGKSAH 173
Y+ L LF+E + E + D + + +VLS CS + + G H
Sbjct: 227 GYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEG--VH 284
Query: 174 GFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE 233
GF++K +E + + L+D YAKCG L + VF+ M ER+VISW ++I A G S
Sbjct: 285 GFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMST 344
Query: 234 DALSLFEMMQATG-VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC 292
+++ +F M G + N +T + VL AC H+G G+ + + LE +
Sbjct: 345 ESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVI-KMGLESNVFVGTS 403
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE 352
++D++ K G +E A + MR E NV W + +A H K+AL +
Sbjct: 404 IIDMYCKCGKVEMARKAFDRMR-EKNVKSWSAMVAGYGMHGH-------AKEALEVFYEM 455
Query: 353 NDGGV 357
N GV
Sbjct: 456 NMAGV 460
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 9/134 (6%)
Query: 211 MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD-- 268
+++ NV SW ++I A G S +AL F M+ +KPN TF + +C + L+D
Sbjct: 112 VDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSC--SALLDLH 169
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
GR+ + + EP + +VD++ K G L +A + + N++ W S +
Sbjct: 170 SGRQAHQQA-LIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEIS-HRNIVSWTSMITG 227
Query: 329 CKEHKQFDMAERVI 342
+ Q D A R +
Sbjct: 228 ---YVQNDDAHRAL 238
>gi|449452160|ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Cucumis sativus]
Length = 532
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 139/400 (34%), Positives = 224/400 (56%), Gaps = 11/400 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +FS + R + D++++ ++LK+ N+ + +H+ +KLG + +V SLL
Sbjct: 90 IAVFSAIFRNGIHPDTYTLPYVLKASARMTNIHLGESIHACTIKLGSAVNEFVGNSLLVM 149
Query: 61 Y-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + AR++FDE+PE +AV+W MI GY+ G+V AR+ F+ +++ W AMI
Sbjct: 150 YRSFDNMRSARQVFDEMPELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMI 209
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y+ + GL +FR M E + PD+ I +LS C+H+G+ L G H ++ +
Sbjct: 210 SGYVQNNCFKEGLHMFRLMQLTE-VEPDEAIIVTILSACAHMGA--LDTGIWIHRYLGRL 266
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
L +++T L+DMYAKCG L A +F M +R+ + W A+I G A G E A+ LF
Sbjct: 267 GLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLF 326
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M+ G+KP+ +TF VL AC ++G+VDEG + + + + +EP+ +HYGC++DL +
Sbjct: 327 MEMEKAGIKPDNITFIAVLAACSNSGMVDEGIRIWNRMSTVHKIEPKSEHYGCVIDLLSR 386
Query: 300 AGFLEEAYEVI----RTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
G EEA VI +T + W +FL+AC +H Q AE A R+ + E
Sbjct: 387 VGRFEEAEGVIQRLPKTASPSEEAVAWRAFLSACCKHGQTQQAEVA---AERLFQLERHS 443
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G + L+ ++Y K E A+RVR +M + V K G S I
Sbjct: 444 GAYVLLSNMYAALGKHEDAKRVRNMMKLKGVEKVPGCSSI 483
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 94/383 (24%), Positives = 148/383 (38%), Gaps = 86/383 (22%)
Query: 12 VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH---EYVVTSFGF 68
+ S S L +L C + N L H+ +LK G + +V + LL+ E S
Sbjct: 1 MSSSSKRCLLLLHKCINMNQLK---QAHAQVLKSGLHNSNFVLSRLLNFCAESRNGSLSH 57
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A KLF + +NTMIK G +LNA
Sbjct: 58 AFKLFQHIQHPTICIFNTMIKALLLRGE-------------------------FLNA--- 89
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ +F + N G+ PD T+ VL + + ++ L G+S H +K +NE +
Sbjct: 90 ---IAVFSAIFRN-GIHPDTYTLPYVLKASARMTNIHL--GESIHACTIKLGSAVNEFVG 143
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM------- 241
L+ MY ++ A VF+ M E + +SWT +I G A+ G + A LF+M
Sbjct: 144 NSLLVMYRSFDNMRSARQVFDEMPELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTG 203
Query: 242 ------------------------MQATGVKPNEMTFTGVLTACVHTGLVDEG---RKYF 274
MQ T V+P+E +L+AC H G +D G +Y
Sbjct: 204 IWGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYL 263
Query: 275 KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
+ L ++D++ K G L+ A + M NV W + ++
Sbjct: 264 GRLGLPLTLRVSTG----LIDMYAKCGHLDLAKYLFNEMSQRDNV-CWNAMISGMAMDGD 318
Query: 335 FDMAERVIKQALRM----VKPEN 353
E IK + M +KP+N
Sbjct: 319 ---GEGAIKLFMEMEKAGIKPDN 338
>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 640
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 130/335 (38%), Positives = 200/335 (59%), Gaps = 11/335 (3%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A++ FD + ERN +W +I GY K G+V AR F++MP +N+ +WS MI Y G
Sbjct: 280 AKEFFDRMQERNVASWVMIIDGYIKVGDVDAARSVFDQMPEKNLVAWSTMIGGYAKTGHP 339
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI---VKNEWELNE 185
LKL++ +G+ PD+ ++S CS LG + +A I V N
Sbjct: 340 YSSLKLYK-TFKEQGIKPDETFALGIISACSQLG-----VPDTAESVICDFVGPSLFPNL 393
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
Q+ T L+DMYAKCG ++ A+ VFE+++++++ ++ +I A+ G SEDA+SLF MQ
Sbjct: 394 QVVTSLIDMYAKCGNIERAVQVFEMVDQKDLHCYSTVITAFANHGLSEDAISLFSEMQKA 453
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305
+KP+ + F GVLTAC H GLV EGR+ F+ + +EY ++P +HY CMVD+ G+AG LEE
Sbjct: 454 NIKPDGVAFLGVLTACNHGGLVGEGRRLFRQMIDEYGIQPSEKHYACMVDILGRAGCLEE 513
Query: 306 AYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365
A+ +I +M + PN +WG+ L+AC+ H +AE + L ++P N G + L+ ++Y
Sbjct: 514 AHSLICSMPVAPNATVWGALLSACRVHLNVQLAEAAATE-LFQIEPNNSGN-YVLLFNIY 571
Query: 366 TMNEKWEGAERVRKLMLNQNVRKARGSSVISSLSV 400
+W+ +VR ++ VRK RGSS I SV
Sbjct: 572 ADAGQWDDFSKVRAMIRENRVRKNRGSSWIELGSV 606
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 93/334 (27%), Positives = 160/334 (47%), Gaps = 34/334 (10%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
F +MHR+++ +F+I +LK+ + + ++ ++ G+ + V ++ ++
Sbjct: 89 FFIKMHRENIVPLNFTIASVLKAVSRLGRIKDGDLVYGLAVRCGYEFDLVVKNVMIELFM 148
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
G AR++FDE+ ER+AV+WN+MI GY +G V AR F+RM RNV SW++MI
Sbjct: 149 RCGEMGSARQMFDEMEERDAVSWNSMITGYGNNGRVDIARKLFDRMEERNVISWTSMIQG 208
Query: 122 YLNAGAYDPGLKLFREMISNE------------------------GLTP--DQMTIGAVL 155
Y+ AG LF M + L P D T ++
Sbjct: 209 YVKAGDLLEARVLFERMPEKDLASWKVMVSAYMSVGNLVAARNLFELMPIHDVGTWNLMI 268
Query: 156 SGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERN 215
SGC G + +A F + + E N +++D Y K G + A VF+ M E+N
Sbjct: 269 SGCCKAGEM-----DAAKEFFDRMQ-ERNVASWVMIIDGYIKVGDVDAARSVFDQMPEKN 322
Query: 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275
+++W+ +I G A G+ +L L++ + G+KP+E G+++AC G+ D
Sbjct: 323 LVAWSTMIGGYAKTGHPYSSLKLYKTFKEQGIKPDETFALGIISACSQLGVPDTAESVIC 382
Query: 276 MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEV 309
L P +Q ++D++ K G +E A +V
Sbjct: 383 DFVGP-SLFPNLQVVTSLIDMYAKCGNIERAVQV 415
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 88/368 (23%), Positives = 156/368 (42%), Gaps = 50/368 (13%)
Query: 19 ILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPE 78
I +LK C LT IH +H+L G I+
Sbjct: 6 ISKLLKQCRSLKTLTTIH---AHLLISGSIAS---------------------------- 34
Query: 79 RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM 138
+ +T N +++ YSK G V A F+ P N W+A+I + Y+ F +M
Sbjct: 35 -SDLTLNKLLRLYSKFGAVSYAHKLFDETPEPNSFLWTALIHGFTENNQYENAFAFFIKM 93
Query: 139 ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198
E + P TI +VL S LG + G +G V+ +E + + ++++++ +C
Sbjct: 94 -HRENIVPLNFTIASVLKAVSRLGRIK--DGDLVYGLAVRCGYEFDLVVKNVMIELFMRC 150
Query: 199 GFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL 258
G + A +F+ MEER+ +SW ++I G + G + A LF+ M+ + N +++T ++
Sbjct: 151 GEMGSARQMFDEMEERDAVSWNSMITGYGNNGRVDIARKLFDRME----ERNVISWTSMI 206
Query: 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPN 318
V G + E R F+ + E+ + + MV + G L A + M + +
Sbjct: 207 QGYVKAGDLLEARVLFERMPEK-----DLASWKVMVSAYMSVGNLVAARNLFELMPIH-D 260
Query: 319 VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVR 378
V W ++ C + + D A+ RM E + + +I D Y + A V
Sbjct: 261 VGTWNLMISGCCKAGEMDAAKEFFD---RM--QERNVASWVMIIDGYIKVGDVDAARSVF 315
Query: 379 KLMLNQNV 386
M +N+
Sbjct: 316 DQMPEKNL 323
>gi|242049708|ref|XP_002462598.1| hypothetical protein SORBIDRAFT_02g028755 [Sorghum bicolor]
gi|241925975|gb|EER99119.1| hypothetical protein SORBIDRAFT_02g028755 [Sorghum bicolor]
Length = 655
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 129/380 (33%), Positives = 216/380 (56%), Gaps = 8/380 (2%)
Query: 19 ILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSF-GFARKLFDELP 77
++ ++K+C ++ +T LH+ ILK GF +H +V +L+H Y G A+ F
Sbjct: 280 LVDLMKACARYSAITEGQQLHTVILKNGFDAHAFVQATLVHFYGCCGLIGLAQMAFKLSD 339
Query: 78 ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
+ + +WN ++ + G + EAR+ F+ MP R+ SWS MI+ Y+ G D L+LF
Sbjct: 340 KSHTASWNALLAALLRKGLIHEARELFDDMPERDTVSWSTMISGYVQTGRSDMALELFYS 399
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
M+ N + P+++T+ + LS + G+ L GK H I+ +L + ++ L+DMYAK
Sbjct: 400 ML-NTSVEPNEVTLASALSAIADSGT--LDQGKWIHDHIMNRPIQLTDNLSAGLIDMYAK 456
Query: 198 CGFLKYALMVFELMEER--NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT 255
G + A+ F ++ +V W A+IC A GY+ +L LF +Q T +KPN +TF
Sbjct: 457 RGSVADAVQFFNCASDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQLQRTSIKPNSITFI 516
Query: 256 GVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRL 315
GVL+AC HTG+V +G+ YF+ + EY ++P I+HYGCMVDL G+AG+LEEA +++ M +
Sbjct: 517 GVLSACCHTGMVAKGKYYFEAMTREYGIQPTIKHYGCMVDLLGRAGYLEEAEQLVSMMPM 576
Query: 316 EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAE 375
+ +V+IWGS L+A + + E+ ++ ++ + G + ++Y W
Sbjct: 577 KADVVIWGSILSAARAQGNIALGEKAAEELAKL--DQTHGASKVALSNIYADAGHWTNVS 634
Query: 376 RVRKLMLNQNVRKARGSSVI 395
VRK + ++N + G S I
Sbjct: 635 VVRKELQDENFERLVGRSGI 654
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 95/362 (26%), Positives = 162/362 (44%), Gaps = 41/362 (11%)
Query: 38 LHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGN 96
+H LK V VAT+L+H Y V AR +FD + RNAVTWN M+ GY K+
Sbjct: 166 IHGFALKRALDGFVIVATNLVHAYAGVLELYSARAMFDGMTHRNAVTWNAMLNGYVKAEM 225
Query: 97 VCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLS 156
+ A + F R+P R+ SW +I Y+ A +K + +M+ G ++ + ++
Sbjct: 226 IDMAAEVFWRIPERDEVSWLTLIDGYICADLISDAMKAYVQMVGEVGANDHEVLLVDLMK 285
Query: 157 GCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFEL------ 210
C+ ++ G+ H I+KN ++ + + LV Y CG + A M F+L
Sbjct: 286 ACARYSAI--TEGQQLHTVILKNGFDAHAFVQATLVHFYGCCGLIGLAQMAFKLSDKSHT 343
Query: 211 -------------------------MEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
M ER+ +SW+ +I G G S+ AL LF M T
Sbjct: 344 ASWNALLAALLRKGLIHEARELFDDMPERDTVSWSTMISGYVQTGRSDMALELFYSMLNT 403
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGR-KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLE 304
V+PNE+T L+A +G +D+G+ + +++ L + ++D++ K G +
Sbjct: 404 SVEPNEVTLASALSAIADSGTLDQGKWIHDHIMNRPIQLTDNLS--AGLIDMYAKRGSVA 461
Query: 305 EAYEVIRTMRLE-PNVIIWGSFLAACKEHKQFDMAERVIKQALRM-VKPENDG--GVFTL 360
+A + + +V W + + + H M+ + Q R +KP + GV +
Sbjct: 462 DAVQFFNCASDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQLQRTSIKPNSITFIGVLSA 521
Query: 361 IC 362
C
Sbjct: 522 CC 523
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 91/411 (22%), Positives = 172/411 (41%), Gaps = 83/411 (20%)
Query: 37 HLHSHILKLGFIS-HVYVATSLLHEY--VVTSFGFARKLFDELPE--RNAVTWNTMIKGY 91
LH+ K G ++ + +V S+L Y + +S A +LFDE P R+ N+++
Sbjct: 27 QLHALAAKSGLLACNAFVRNSVLSFYSRLPSSLASALQLFDETPAPLRDTAARNSVLAAL 86
Query: 92 SKSGNVCEARDFFERMPL--RNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQM 149
+++G++ A+ + MP R+ S++ ++ A AG + +FR M+S E + P+++
Sbjct: 87 TRAGHLDRAQRLLDEMPRVHRDAVSYTTLVTALARAGHAGRAVAVFRGMLS-ENVVPNEV 145
Query: 150 TI-GAVL--SGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
T+ GA++ + C +VG++ HGF +K + +AT LV YA L A
Sbjct: 146 TLAGAIMAFARCGAPATVGMI-----HGFALKRALDGFVIVATNLVHAYAGVLELYSARA 200
Query: 207 VFELMEERNVISWTALICGSAHR--------------------------GY-----SEDA 235
+F+ M RN ++W A++ G GY DA
Sbjct: 201 MFDGMTHRNAVTWNAMLNGYVKAEMIDMAAEVFWRIPERDEVSWLTLIDGYICADLISDA 260
Query: 236 LSLF-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI-----DEEYDLEPRIQH 289
+ + +M+ G +E+ ++ AC + EG++ +I D ++ + H
Sbjct: 261 MKAYVQMVGEVGANDHEVLLVDLMKACARYSAITEGQQLHTVILKNGFDAHAFVQATLVH 320
Query: 290 -YGC------------------------MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324
YGC ++ + G + EA E+ M E + + W +
Sbjct: 321 FYGCCGLIGLAQMAFKLSDKSHTASWNALLAALLRKGLIHEARELFDDMP-ERDTVSWST 379
Query: 325 FLAACKEHKQFDMAERVIKQALRMVKPEND---GGVFTLICDLYTMNE-KW 371
++ + + DMA + L N+ + I D T+++ KW
Sbjct: 380 MISGYVQTGRSDMALELFYSMLNTSVEPNEVTLASALSAIADSGTLDQGKW 430
>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
Length = 638
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 121/328 (36%), Positives = 194/328 (59%), Gaps = 4/328 (1%)
Query: 68 FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
FA LF+ +P+R+ ++W+ MI GY+K G++ AR F+ MP ++V +++ ++A Y G
Sbjct: 274 FAHSLFNRMPKRDVISWSNMIDGYAKLGDIKVARTLFDEMPDKDVVAFNTIMAGYAQNGY 333
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
Y L++F EM L+PD+ T+ LS S LG V S H + ++N + ++
Sbjct: 334 YTEALEIFHEMQRQSNLSPDETTLVVALSAISQLGHVE--KAASMHNYFLENGISVTGKV 391
Query: 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
A L+DMY+KCG ++ A+++F+ ++++ + W A+I G A G + A + M V
Sbjct: 392 AVALIDMYSKCGSIENAILIFDGVDQKGIDHWNAMISGMARNGLGKLAFGMLLEMHRLSV 451
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
KP+ +TF GVL AC H GLV EG F+++ + + LEP++QHYGCMVD+ GKAG +E A
Sbjct: 452 KPDGITFIGVLNACAHAGLVKEGLICFELMRKVHKLEPKLQHYGCMVDILGKAGLVEGAL 511
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM 367
+ I M +EPN IIW + L+AC+ H+ F + E + K + M + + L+ ++Y
Sbjct: 512 KFIEEMPIEPNDIIWRTLLSACQNHENFTIGELIAKHLMTM--DSCNSSSYVLLSNIYAR 569
Query: 368 NEKWEGAERVRKLMLNQNVRKARGSSVI 395
W A +VR +M QN+ K G S I
Sbjct: 570 LGLWSAASKVRMMMKKQNLTKVPGCSWI 597
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 156/314 (49%), Gaps = 27/314 (8%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF M D FS ILK+C + +H ++KL S++++ L+ Y+
Sbjct: 112 LFCMMLENGFCVDKFSFSLILKACARVCLVEEGKQIHGLLMKLEIGSNLFLLNCLIAMYL 171
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL--RNVASWSAMI 119
FAR++FD +P +++V++N+MI GY KSG + AR+ F+ MPL +N+ SW++M+
Sbjct: 172 RCGDIEFARQVFDRMPIQDSVSYNSMIDGYVKSGTIDLARELFDSMPLEDKNLISWNSML 231
Query: 120 AAYLNA-GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
+ L+LF +M D ++ ++ G + G + + AH
Sbjct: 232 GGFAQTKDGIGLALELFEKMPER-----DLVSWNTIIGGFAKCGRI-----EFAHSLF-- 279
Query: 179 NEWELNEQIA-TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
N + I+ + ++D YAK G +K A +F+ M +++V+++ ++ G A GY +AL
Sbjct: 280 NRMPKRDVISWSNMIDGYAKLGDIKVARTLFDEMPDKDVVAFNTIMAGYAQNGYYTEALE 339
Query: 238 LF-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG----C 292
+F EM + + + P+E T L+A G V++ Y LE I G
Sbjct: 340 IFHEMQRQSNLSPDETTLVVALSAISQLGHVEKAASM-----HNYFLENGISVTGKVAVA 394
Query: 293 MVDLFGKAGFLEEA 306
++D++ K G +E A
Sbjct: 395 LIDMYSKCGSIENA 408
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 81/393 (20%), Positives = 164/393 (41%), Gaps = 48/393 (12%)
Query: 13 PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS----FGF 68
PS ++L +L+ C N+ ++ +H+ I+K G++ + + T ++ + + F
Sbjct: 12 PSTPPTLL-LLRHCETQND---VNQVHARIIKTGYLKNSSLTTKIILNSISSPHKPLVEF 67
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR +F +++ R+ + P W+A+I +Y +
Sbjct: 68 ARYVF-----------------FTRYAVQRIRRNHLDDDPFL----WNAVIKSYSHGNEP 106
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L LF M+ N G D+ + +L C+ + V GK HG ++K E N +
Sbjct: 107 VRALVLFCMMLEN-GFCVDKFSFSLILKACARVCLVE--EGKQIHGLLMKLEIGSNLFLL 163
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+ MY +CG +++A VF+ M ++ +S+ ++I G G + A LF+ M
Sbjct: 164 NCLIAMYLRCGDIEFARQVFDRMPIQDSVSYNSMIDGYVKSGTIDLARELFDSMPLE--D 221
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR--IQHYGCMVDLFGKAGFLEEA 306
N +++ +L T + + E ++ P + + ++ F K G +E A
Sbjct: 222 KNLISWNSMLGGFAQT------KDGIGLALELFEKMPERDLVSWNTIIGGFAKCGRIEFA 275
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366
+ + M + +VI W + + + +A + + P+ D F I Y
Sbjct: 276 HSLFNRMP-KRDVISWSNMIDGYAKLGDIKVARTLFDEM-----PDKDVVAFNTIMAGYA 329
Query: 367 MNEKWEGAERVRKLMLNQNVRKARGSSVISSLS 399
N + A + M Q+ ++++ +LS
Sbjct: 330 QNGYYTEALEIFHEMQRQSNLSPDETTLVVALS 362
>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
Length = 541
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 142/398 (35%), Positives = 215/398 (54%), Gaps = 37/398 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F +M V D + +L+S + L + +H+ IL+ G +V TSL
Sbjct: 49 ISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSL--- 105
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
I YS SG V AR+ F MP RNV SWS MI
Sbjct: 106 ---------------------------ISMYSSSGLVDMARNLFAVMPERNVISWSCMIN 138
Query: 121 AYLNAGAYDPGLKLFREM--ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
Y+ G Y L LFREM + + P++ T+ VL+ C LG+ L GK AH +I K
Sbjct: 139 GYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGA--LEHGKWAHAYIDK 196
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFE-LMEERNVISWTALICGSAHRGYSEDALS 237
++ + T L+DMYAKCG ++ A VF L ++V++W+A+I G A G +E+ +
Sbjct: 197 CGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVG 256
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LF M GV+PN +TF V ACVH GLV EG+ Y + + E+Y + P IQHYGCMVDL+
Sbjct: 257 LFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLY 316
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
G+AG ++EA+ V+++M +EP+V++WG+ L+ + H + E +K+ + + +P N G
Sbjct: 317 GRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIEL-EPTNSGA- 374
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ ++Y +WE VR LM ++K G S+I
Sbjct: 375 YVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLI 412
>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 609
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 142/396 (35%), Positives = 221/396 (55%), Gaps = 36/396 (9%)
Query: 1 MQLFSQMHR-QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
++LFSQMH S+ D+ + + K+ ++++ +HS +++ GF S +V SL+H
Sbjct: 120 VELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVH 179
Query: 60 EYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y V FGFA A FE M R+ +W+++I
Sbjct: 180 MYSV--FGFAES----------------------------AYQVFEIMSYRDRVAWNSVI 209
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ G + L L+REM +EG+ PD T+ ++LS C LG++ L G+ H ++VK
Sbjct: 210 NGFALNGMPNEALTLYREM-GSEGVEPDGFTMVSLLSACVELGALAL--GERVHMYMVKV 266
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
N+ + L+D+Y+KCG + A VF+ MEER+V+SWT+LI G A G +AL LF
Sbjct: 267 GLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLF 326
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
++ G+KP+E+TF GVL AC H G++DEG YF+ + EEY + PRI+H+GCMVDL +
Sbjct: 327 GELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCR 386
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG + +AY+ IR M + PN +IW + L AC H ++ E + R+ + G F
Sbjct: 387 AGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRL--EQRHSGDFV 444
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ +LY +W + VRK+ML + V+K G S++
Sbjct: 445 LLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLV 480
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 120/261 (45%), Gaps = 35/261 (13%)
Query: 68 FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
FA ++F+++ N TWNTMI+G+++S N
Sbjct: 87 FAAQIFNQIQAPNIFTWNTMIRGFAESENP------------------------------ 116
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
P ++LF +M + + PD T + + L V L G+ H +V+N ++ +
Sbjct: 117 -SPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSL--GEGIHSVVVRNGFDSLRFV 173
Query: 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
LV MY+ GF + A VFE+M R+ ++W ++I G A G +AL+L+ M + GV
Sbjct: 174 QNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGV 233
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
+P+ T +L+ACV G + G + M + L ++DL+ K G +A
Sbjct: 234 EPDGFTMVSLLSACVELGALALGER-VHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQ 292
Query: 308 EVIRTMRLEPNVIIWGSFLAA 328
+V M E +V+ W S +
Sbjct: 293 KVFDEME-ERSVVSWTSLIVG 312
>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
Length = 614
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 143/458 (31%), Positives = 235/458 (51%), Gaps = 72/458 (15%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ FS M R+ DSF+ ++K+ + + + +HSH++KLG + +V +L+
Sbjct: 118 LAAFSAMPRR----DSFTYSFLIKALSAAG-VAPVRAVHSHVVKLGSVEDTFVGNALIDA 172
Query: 61 YV-------------------VTSFGFA-------------RKLFDELPERNAVTWNTMI 88
Y V S+ A RKLFDE+PE++ V+WNT++
Sbjct: 173 YSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTIL 232
Query: 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMIS-------- 140
GY+K+G V A + F+RMP RNV SWS M++ Y G + +F +M S
Sbjct: 233 DGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTI 292
Query: 141 ------NEGLTP----------------DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
+GL D + ++L+ C+ GS+ L GK H ++ K
Sbjct: 293 MVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSL--GKRIHRYVRK 350
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSEDALS 237
+ + L+DM+ KCG + A VF+ +++ +SW ++I G A G+ + AL
Sbjct: 351 RNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALE 410
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LF M+ G P+ +T VL+AC H G VDEGR++F ++ +Y + P+I+HYGCM+DL
Sbjct: 411 LFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLL 470
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
G+ G ++EA ++I++M EPN +IWGS L+AC+ HK + AE + + L ++P N G
Sbjct: 471 GRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNE-LSKLQPSNAGN- 528
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++ ++Y +W + R M +K GSS +
Sbjct: 529 YAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWV 566
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 130/303 (42%), Gaps = 16/303 (5%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+LF+QM SV D +++ IL +C +L++ +H ++ K +V +L+ +
Sbjct: 308 KLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMF 367
Query: 62 V-VTSFGFARKLFD-ELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR----NVASW 115
A +FD E ++++V+WN++I G++ G+ +A + F +M + + +
Sbjct: 368 CKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTM 427
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
+++A + G D G + F M + G+ P G ++ LG GL+ K A
Sbjct: 428 INVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMI---DLLGRGGLI--KEAVDL 482
Query: 176 IVKNEWELNEQIATILVD---MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
I WE NE I L+ ++ + + A+ ++ N ++ L A G
Sbjct: 483 IKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQW 542
Query: 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV-DEGRKYFKMIDEEYD-LEPRIQHY 290
D M+ TG + + L H V D + I E D L ++H
Sbjct: 543 SDMAKARMQMKGTGSQKTAGSSWVELNETFHEFTVGDRKHQDSDQISEMVDRLSSHVKHV 602
Query: 291 GCM 293
GC+
Sbjct: 603 GCV 605
>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 130/395 (32%), Positives = 224/395 (56%), Gaps = 35/395 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF M ++ +D+ +++ I+ +C+H + + +I + VY+
Sbjct: 110 LRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLG------ 163
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
NT+I Y + GN+ AR F+ MP R+V SW++MI
Sbjct: 164 ------------------------NTLIDMYGRLGNLTAARKLFDNMPKRDVISWTSMIT 199
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y A + +KLF+EM++ + + PD++T+ +VLS C+HLG L +G + H +I ++
Sbjct: 200 GYSQASQFSDAVKLFQEMMAAK-VKPDKVTVASVLSACAHLGK--LDVGWAVHHYIRRHG 256
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ + + L+DMY KCG ++ AL VF M++++ +SWT++I G A G++ AL LF
Sbjct: 257 VQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFS 316
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M GV+P TF G+L AC H GLV++G +YF+ ++ + L P ++HYGC+VDL ++
Sbjct: 317 QMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRS 376
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G +++AYE I+ M + P+V++W L+ACK H +AE K+ L + D G + L
Sbjct: 377 GNIDKAYEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRLLEL--DPCDSGNYVL 434
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ + Y ++W+ A ++R+LM + +V+K GSS I
Sbjct: 435 LSNTYAGVDRWDDAMKMRELMEDSDVQKPSGSSSI 469
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/322 (28%), Positives = 156/322 (48%), Gaps = 37/322 (11%)
Query: 27 THFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT-SFGFARKLFDELPERNAVTWN 85
T+ N T+ +H H LKLGF S+++V+ +L+H Y + GFA+K+
Sbjct: 35 TNINASTISSSIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKM------------- 81
Query: 86 TMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLT 145
F+ M R++ SW+ +I Y Y L+LF M + +
Sbjct: 82 ------------------FDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTA-ANIK 122
Query: 146 PDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYAL 205
D +T+ ++ CSHLG S +I +N E++ + L+DMY + G L A
Sbjct: 123 ADAVTMVKIILACSHLGDWEF--ADSMVKYIKENNLEIDVYLGNTLIDMYGRLGNLTAAR 180
Query: 206 MVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG 265
+F+ M +R+VISWT++I G + DA+ LF+ M A VKP+++T VL+AC H G
Sbjct: 181 KLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLG 240
Query: 266 LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSF 325
+D G I + ++ I ++D++ K G +E+A EV M+ + + + W S
Sbjct: 241 KLDVGWAVHHYI-RRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMK-DKDSVSWTSV 298
Query: 326 LAACKEHKQFDMAERVIKQALR 347
++ + + A + Q LR
Sbjct: 299 ISGLAVNGFANSALDLFSQMLR 320
>gi|195647336|gb|ACG43136.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 788
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 139/394 (35%), Positives = 226/394 (57%), Gaps = 7/394 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L+SQM + +L +C +L +H++ LK+G ++++V++SL+
Sbjct: 364 LKLYSQMLADGCRPNISCFSSVLSACATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDM 423
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y +A+++F+ LPE+N V WN++I GYS +G + EA F +MP RN SW+ MI
Sbjct: 424 YCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMI 483
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y + L F M+++ G P ++T+ +VL C++L S L MG+ H IVK
Sbjct: 484 SGYAENRRFGDALNYFYAMLAS-GHIPGEITLSSVLLACANLCS--LEMGRMVHAEIVKL 540
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
E N + T L DMYAK G L + VF M E+N I+WTA++ G A G++E+++SLF
Sbjct: 541 GIEDNIFMGTALSDMYAKSGDLDSSRRVFYQMPEKNNITWTAMVQGLAENGFAEESISLF 600
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
E M G+ PNE TF +L AC H GLV++ YF+ + + + + P+ +HY CMVD+ +
Sbjct: 601 EDMIENGIAPNEHTFLAILFACSHCGLVEQAIHYFETM-QAHGIPPKSKHYTCMVDVLAR 659
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG L EA E++ + E + W S L+AC ++ ++ ER K+ L ++ +N G +
Sbjct: 660 AGCLPEAEELLMKVSSELDTSSWSSLLSACSTYRNKEIGERAAKK-LHELEKDNTAG-YV 717
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
L+ ++Y KW+ A R LM +++K G S
Sbjct: 718 LLSNMYASCGKWKDAAETRILMQGASLKKDAGCS 751
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 135/296 (45%), Gaps = 66/296 (22%)
Query: 32 LTVIHHLHSHILKLGFISHVYVATSLLHEYVV--------------------TSFGF--- 68
L ++ LH+H + G + VA++LL Y +SF +
Sbjct: 96 LPLVLSLHAHAFRSGLTADRSVASNLLTAYAAFTRAADRDQAFRDCVAADAASSFTYDFM 155
Query: 69 ------------ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
AR+LF +PE++ V++ TM+ K G+V +A + +ER PL +VA ++
Sbjct: 156 VSEHVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFFT 215
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCS-------HLGSVGLL-- 167
AMI+ ++ + +FR+M++ + P+ +T+ V+ C +G VGL
Sbjct: 216 AMISGFVRNELHKDAFPVFRKMLTC-SVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVK 274
Query: 168 --------------------MGKSAHGFIVKNEWELNEQIA-TILVDMYAKCGFLKYALM 206
MG +A V ++ E+ + ++ T L+D+YA G L A
Sbjct: 275 CNLFEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYADLGDLYGARR 334
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACV 262
V + M RN +SW LI +G + +AL L+ M A G +PN F+ VL+AC
Sbjct: 335 VLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACA 390
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 1/154 (0%)
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
T +VD K G ++ A+ ++E +V +TA+I G +DA +F M V+
Sbjct: 184 TTMVDALMKRGSVRDAVELYERCPLHSVAFFTAMISGFVRNELHKDAFPVFRKMLTCSVR 243
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
PN +T V+ ACV G D + + E I+ + ++ L+ + G A+
Sbjct: 244 PNVVTLICVIKACVGAGEFDLAMGVVGLAVKCNLFEKSIEVHNSLITLYLRMGDAAAAHR 303
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVI 342
V M + +V+ W + L + A RV+
Sbjct: 304 VFDDMEVR-DVVSWTALLDVYADLGDLYGARRVL 336
>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
Length = 609
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 135/384 (35%), Positives = 217/384 (56%), Gaps = 9/384 (2%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSF-GFARKLF 73
D F +LK+C +L + +H+ + F+ V +SL+ Y AR +F
Sbjct: 103 DHFVYATLLKACASLCSLRLGKQVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVF 162
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
D + + +V+W M+ GY++SG EA + F R P+RN+ SW+A+I+ + +G G
Sbjct: 163 DSILVKTSVSWTAMLSGYARSGLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCIDGCY 222
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
+F EM D + + +V+ C++L +GL GK HG ++ + +E I+ LVD
Sbjct: 223 MFIEMRREGVDIVDPLVLSSVVGACANLAVLGL--GKQIHGLVIGSGYESCLFISNALVD 280
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
MYAKC + A VF M R+V+SWT++I G+A G +++AL L++ M +KPNE+T
Sbjct: 281 MYAKCSDILAARNVFNRMLHRDVVSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVT 340
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
F G++ AC H GLV +GRK FK + E+Y + P +Q + C +DL ++G L EA ++I+TM
Sbjct: 341 FVGLIYACSHAGLVSKGRKLFKAMIEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKTM 400
Query: 314 RLEPNVIIWGSFLAACKEHKQFDMAERVIKQ--ALRMVKPENDGGVFTLICDLYTMNEKW 371
+P+ W + L+ACK H +M R+ + +L M +P + L+ ++Y KW
Sbjct: 401 PHKPDEPTWAALLSACKHHGNTEMGVRIADRLLSLNMHEPST----YVLLSNVYAGAGKW 456
Query: 372 EGAERVRKLMLNQNVRKARGSSVI 395
E RVRKLM + V++ G S I
Sbjct: 457 EQMSRVRKLMTDMEVKRKPGYSSI 480
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 133/301 (44%), Gaps = 39/301 (12%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
NT++ Y K + +A F+ MP R+ SW++++ AY A + L +F M + + L
Sbjct: 41 NTLLDAYGKCNLLQDAHYLFDEMPQRDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRL 100
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
PD +L C+ L S L +GK H V + + ++ + + LVDMYAKCG A
Sbjct: 101 QPDHFVYATLLKACASLCS--LRLGKQVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIA 158
Query: 205 LMVFE---------------------LMEE----------RNVISWTALICGSAHRGYSE 233
VF+ L +E RN+ SWTALI G GY
Sbjct: 159 RSVFDSILVKTSVSWTAMLSGYARSGLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCI 218
Query: 234 DALSLFEMMQATGVK-PNEMTFTGVLTACVHTGLVDEGRKYFKM-IDEEYDLEPRIQHYG 291
D +F M+ GV + + + V+ AC + ++ G++ + I Y+ I +
Sbjct: 219 DGCYMFIEMRREGVDIVDPLVLSSVVGACANLAVLGLGKQIHGLVIGSGYESCLFISN-- 276
Query: 292 CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ-ALRMVK 350
+VD++ K + A V M L +V+ W S + +H + A + Q L +K
Sbjct: 277 ALVDMYAKCSDILAARNVFNRM-LHRDVVSWTSIIVGAAQHGRAKEALDLYDQMVLAEIK 335
Query: 351 P 351
P
Sbjct: 336 P 336
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 9/166 (5%)
Query: 167 LMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGS 226
L K H IVK+ + + L+D Y KC L+ A +F+ M +R+ +SW +++
Sbjct: 19 LNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRDHVSWASILTAY 78
Query: 227 AHRGYSEDALSLFEMMQATG-VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP 285
LS+F M T ++P+ + +L AC + G K + + L P
Sbjct: 79 NQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLG----KQVHARFVLSP 134
Query: 286 RIQH---YGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
+ +VD++ K G A V ++ ++ +V W + L+
Sbjct: 135 FVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSV-SWTAMLSG 179
>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
Length = 664
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 142/397 (35%), Positives = 226/397 (56%), Gaps = 14/397 (3%)
Query: 6 QMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS 65
+MH + D+ + L + ++ V LH +++K G VAT+L+ Y
Sbjct: 146 RMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVKAGCRLDACVATALIDMY--GK 203
Query: 66 FGFAR---KLFDELPERNAVTWNTMIKGYSKSGNVCEA----RDFFERMPLRNVASWSAM 118
G A ++FDE + + N ++ G S++ V EA R+F R NV SW+++
Sbjct: 204 CGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSI 263
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
+A + G + LFREM S EG+ P+ +TI VL +++ + L+ G+SAH F ++
Sbjct: 264 VACCVQNGRDLEAVDLFREMQS-EGIEPNSVTIPCVLPAFANIAA--LMHGRSAHCFSLR 320
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ + + + LVDMYAKCG ++ A M+FE M RNV+SW A+I G A G +E+A+ L
Sbjct: 321 KGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRL 380
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F MQ++ KP+ +TFT VL AC G +EGR YF + ++ + PR++HY CMV L G
Sbjct: 381 FRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYACMVTLLG 440
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG L++AY++I M EP+ IWGS L +C+ H +AE V + L ++PEN G +
Sbjct: 441 RAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGNVVLAE-VAAENLFQLEPENAGN-Y 498
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y + W+G R+R +M ++K +G S I
Sbjct: 499 VLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCSWI 535
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 104/398 (26%), Positives = 167/398 (41%), Gaps = 63/398 (15%)
Query: 11 SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGF-- 68
S P D + LKSC+ +H + G +VA+SLLH Y+ FG
Sbjct: 18 SFPPDPRLLPSALKSCSALRLARALH---AAAAVAGVSRDAFVASSLLHAYL--RFGATA 72
Query: 69 -ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR----NVASWSAMIAAYL 123
AR + D +P R V W+ +I ++ G+ A ERM NV +W+ +++
Sbjct: 73 DARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGVEPNVITWNGLVSGLN 132
Query: 124 NAG-AYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+G A D L L R + EG PD + LS +G V + G+ HG++VK
Sbjct: 133 RSGRARDAVLALVR--MHGEGFLPDATGVSCALSAVGDVGDVAV--GEQLHGYVVKAGCR 188
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELME------------------------------ 212
L+ +AT L+DMY KCG + VF+
Sbjct: 189 LDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRLFREF 248
Query: 213 -----ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
E NV+SWT+++ G +A+ LF MQ+ G++PN +T VL A + +
Sbjct: 249 VGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAAL 308
Query: 268 DEGRKYFKMIDEEYDLEPRIQHY----GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWG 323
GR + L H +VD++ K G + +A + M NV+ W
Sbjct: 309 MHGRSAHC-----FSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYR-NVVSWN 362
Query: 324 SFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
+ + H + + A R+ + +++ K + D FT +
Sbjct: 363 AMIGGYAMHGEAENAVRLFR-SMQSSKEKPDLVTFTCV 399
>gi|125535277|gb|EAY81825.1| hypothetical protein OsI_36997 [Oryza sativa Indica Group]
Length = 515
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 146/402 (36%), Positives = 222/402 (55%), Gaps = 19/402 (4%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+L S + R P D S L +L + + L+ +H L +L+LGF+SH ++ +LL Y
Sbjct: 115 RLLSSLRRLHAP-DRLSFLPLLGCVSSLSLLSAVHAL---LLRLGFLSHHAISLALLKPY 170
Query: 62 VVTSFGFARKLFDELPERN--AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVAS----- 114
+AR LFDE+ +RN V +NT+I ++ ++ AR F+ M +
Sbjct: 171 ---PLHYARVLFDEMTQRNKCTVAYNTLITACFRADDLGAARHLFDEMQRYRRSRRSVVS 227
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
W+ MIA D + F M+ + PD T+ AVL C LG+VG+ G+ AH
Sbjct: 228 WNVMIAGCAWCKKDDIAVLCFERMVREGEVAPDDGTLAAVLPVCGRLGNVGV--GRWAHE 285
Query: 175 FIVKNEW-ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE 233
K+ + +A ++DMY KCG + A VF+ M +R+V+SW +I G + G+
Sbjct: 286 HARKSGLLDRKVHVANAVMDMYCKCGDVHSAREVFKGMRQRSVVSWNTMISGFSLNGHGI 345
Query: 234 DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293
+ + L+ M+ G PNE+TF GVL C H G VD GR F+ + E+ +EP I+HYGCM
Sbjct: 346 EGIELYREMRTHGEMPNEVTFLGVLGCCAHAGAVDVGRDIFQSMQLEHGIEPVIEHYGCM 405
Query: 294 VDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353
VDL G++G LEEAY +I+ M + PN IWG+ L+AC H +AE +K+ + + +P N
Sbjct: 406 VDLLGRSGLLEEAYALIQGMPMRPNAAIWGALLSACHAHSGISIAEVALKELINL-EPWN 464
Query: 354 DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G + L+ +LY +WE A R+LM +V+KA G S+I
Sbjct: 465 SGN-YVLLANLYAETGRWEEAGDARRLMRRMSVQKAPGQSLI 505
>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
Length = 987
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 134/398 (33%), Positives = 229/398 (57%), Gaps = 10/398 (2%)
Query: 1 MQLFSQM-HRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
++ FS+M S+ D+F++ +L +C + L + +HS+IL+ G + +L+
Sbjct: 464 LKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALIS 523
Query: 60 EYVVT-SFGFARKLFDE--LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
Y + S AR++ D+ + + N +++ +++GY K G+ +AR+ F+ M R+V +W+
Sbjct: 524 TYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWT 583
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
AMI Y G D ++LFR MI G P+ T+ AVLS C+ L L GK H
Sbjct: 584 AMIVGYHQNGQNDEAMELFRSMILI-GPEPNSHTLAAVLSACASLAY--LDYGKQIHCKA 640
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVF-ELMEERNVISWTALICGSAHRGYSEDA 235
+++ E + ++ ++ +YA+ G + A VF ++ + I+WT++I A G E A
Sbjct: 641 IRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQA 700
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
+ LFE M GVKP+ +T+ GVL+AC H G VD+G++Y++ + E+ + P++ HY CMVD
Sbjct: 701 VVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVD 760
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
L +AG L EA+E I+ M + P+ ++WGS LAAC+ K D+AE + L + P N G
Sbjct: 761 LHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAGKLLS-IDPHNSG 819
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
++ + ++Y+ +W A R+ KL ++ V+K G S
Sbjct: 820 A-YSALANVYSACGRWNDAARIWKLRKDKGVKKETGFS 856
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 107/389 (27%), Positives = 178/389 (45%), Gaps = 40/389 (10%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++ F M + F++ ++L SC V +H ++KLG S V VA S+L+
Sbjct: 332 VKTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYM 391
Query: 61 Y-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y AR +F+ + R+ +WN M+ Y+ G + A FE M R++ SW+ +I
Sbjct: 392 YGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTII 451
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A Y G LK F M+S + PD T+ +VLS C++L L MGK H +I++
Sbjct: 452 AGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRM--LKMGKQMHSYILRT 509
Query: 180 EWELNEQIATILVDMYAKCGFL---------------------------------KYALM 206
+ QI L+ YAK G + K A
Sbjct: 510 GMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQARE 569
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
+F++M R+VI+WTA+I G G +++A+ LF M G +PN T VL+AC
Sbjct: 570 IFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAY 629
Query: 267 VDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSF 325
+D G++ + K I E + ++ ++ ++G + A V + I W S
Sbjct: 630 LDYGKQIHCKAIRSLQ--EQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSM 687
Query: 326 LAACKEHKQFDMAERVIKQALRM-VKPEN 353
+ A +H + A + ++ +R+ VKP++
Sbjct: 688 IVAMAQHGLGEQAVVLFEEMVRVGVKPDH 716
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/345 (28%), Positives = 165/345 (47%), Gaps = 44/345 (12%)
Query: 22 ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS-----FGFARKLFDEL 76
+L+ C N + +H+H +K G + Y+ +LL Y F AR LFD++
Sbjct: 215 LLQLCRTAVNPSAGRAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLFDDI 274
Query: 77 P--ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKL 134
P RNA TWN+++ Y+KSG + +A F MP R+ SW+ MI +G + +K
Sbjct: 275 PYARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKT 334
Query: 135 FREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDM 194
F +M+S EG P Q T+ VLS C+ + + G+ G+ H F+VK +A ++ M
Sbjct: 335 FLDMVS-EGFAPSQFTLTNVLSSCAAMEACGV--GRKVHPFVVKLGLSSCVPVANSVLYM 391
Query: 195 YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE-------------- 240
Y KCG + A VFE M+ R+V SW ++ H+G E A+S+FE
Sbjct: 392 YGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTII 451
Query: 241 ------------------MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD 282
M+ A+ ++P+ T T VL+AC + ++ G++ I
Sbjct: 452 AGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYI-LRTG 510
Query: 283 LEPRIQHYGCMVDLFGKAGFLEEAYEVI-RTMRLEPNVIIWGSFL 326
+ Q ++ + K+G +E A ++ + + + NVI + + L
Sbjct: 511 MPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALL 555
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 2/148 (1%)
Query: 191 LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250
L+ +YAK G L A +VF M +R+ +SWT +I G G DA+ F M + G P+
Sbjct: 287 LLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPS 346
Query: 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI 310
+ T T VL++C GRK + + L + ++ ++GK G E A V
Sbjct: 347 QFTLTNVLSSCAAMEACGVGRKVHPFV-VKLGLSSCVPVANSVLYMYGKCGDAETARAVF 405
Query: 311 RTMRLEPNVIIWGSFLAACKEHKQFDMA 338
M++ +V W ++ + ++A
Sbjct: 406 ERMQVR-SVSSWNVMVSLYTHQGRMELA 432
>gi|224120036|ref|XP_002318226.1| predicted protein [Populus trichocarpa]
gi|222858899|gb|EEE96446.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 128/327 (39%), Positives = 199/327 (60%), Gaps = 6/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR LF+++PE+N ++W +MI Y+ + ++ AR FFE MP RNV SW++MI++Y G +
Sbjct: 181 ARGLFEKMPEKNVISWTSMIGAYADTDDLETARSFFETMPQRNVVSWNSMISSYAKHGKF 240
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L LF +M S EG+TPD T +VLS CS+LG L GK H ++ + + +
Sbjct: 241 VESLNLFVQMQS-EGVTPDGYTFVSVLSACSNLGD--LEFGKYIH-YLSGDLSQSEVMVG 296
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
T L +MYA+CG + A VF + +R+V W +I A G SE+A+ +F +M+ TG+K
Sbjct: 297 TALTEMYAQCGDVDKAFAVFIKIGKRDVFCWNVIIKALALHGRSEEAIKIFLLMRKTGLK 356
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
PN+ TFT L AC H GLV+EG F ++++Y + P+I HYGC++D+ + G LEEA
Sbjct: 357 PNDFTFTSALFACSHGGLVEEGHIIFNSMEKDYKIIPKITHYGCLIDMLCRNGQLEEAML 416
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
++ M +P+V IWG+ L C+ +AE+V+++A M N+ GV+ L+ +++
Sbjct: 417 LVEDMPFQPDVAIWGALLGGCRVTGDLKLAEKVVEKATEM--ETNESGVYVLLSNIHASA 474
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
+W A RK M + + K GSSV+
Sbjct: 475 GQWIEAADARKKMDEKKISKKTGSSVV 501
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/378 (25%), Positives = 163/378 (43%), Gaps = 60/378 (15%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+++F +M ++ + +F+ +++ SC +H I+K GF S VA SL +
Sbjct: 39 IRMFDEMPQRGLKPHNFTYPYVINSCCELEWYGRGKRVHCEIVKSGFESSYAVANSLFNM 98
Query: 61 YVVTSFGF------------ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP 108
Y+ F ARK+FD++ R WN MI Y G+V AR+ F+ MP
Sbjct: 99 YLKMPASFDVGLASNCKLDYARKIFDDMCVRPVELWNQMIGKYVNIGDVKSARELFDIMP 158
Query: 109 LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLM 168
R++ SW++MI Y G LF +M P++ I
Sbjct: 159 ERDIVSWNSMILGYAKGGKVANARGLFEKM-------PEKNVI----------------- 194
Query: 169 GKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAH 228
W T ++ YA L+ A FE M +RNV+SW ++I A
Sbjct: 195 -----------SW-------TSMIGAYADTDDLETARSFFETMPQRNVVSWNSMISSYAK 236
Query: 229 RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQ 288
G ++L+LF MQ+ GV P+ TF VL+AC + G ++ G KY + + + +
Sbjct: 237 HGKFVESLNLFVQMQSEGVTPDGYTFVSVLSACSNLGDLEFG-KYIHYLSGDLS-QSEVM 294
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348
+ +++ + G +++A+ V + + +V W + A H + +E IK L M
Sbjct: 295 VGTALTEMYAQCGDVDKAFAVFIKIG-KRDVFCWNVIIKALALHGR---SEEAIKIFLLM 350
Query: 349 VKPENDGGVFTLICDLYT 366
K FT L+
Sbjct: 351 RKTGLKPNDFTFTSALFA 368
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 201 LKYALMVFELM---EERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGV 257
+ Y+ ++F M ++ W A+I G A G ++ + +F+ M G+KP+ T+ V
Sbjct: 1 MDYSNLIFSQMGHDSSAEIVIWNAMIRGYAFNGPFQECIRMFDEMPQRGLKPHNFTYPYV 60
Query: 258 LTACVHTGLVDEGRK 272
+ +C G++
Sbjct: 61 INSCCELEWYGRGKR 75
>gi|345505218|gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wallichii]
Length = 617
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 201/327 (61%), Gaps = 4/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A+ LFD +P R+ VTW+TMI GY+K G V +A+ F++MP R+V S+++MIA Y+
Sbjct: 275 AKYLFDVMPRRDVVTWSTMIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMIAGYVQNRYN 334
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L++F +M L+PD+ T+ VLS + LG + M H +IV+ ++ L ++
Sbjct: 335 MEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAM--DMHLYIVEKQFFLGGKLG 392
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+DMY+KCG +++A++VF+ +E +++ W A+I G A G E A + ++ +K
Sbjct: 393 VALIDMYSKCGSIQHAMLVFKGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIK 452
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+++TF G+L AC H+GLV EG F+++ ++ +EPR+QHYGCMVD+ ++G +E A
Sbjct: 453 PDDITFVGLLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKN 512
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+I M +EPN +IW +FLAAC HK+F+ E V K + + + + L+ +LY
Sbjct: 513 LIEEMPIEPNDVIWRTFLAACNHHKEFETGELVAKHLIW--EAGYNPSSYVLLSNLYASF 570
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
KW+ R+R +M + + K G S I
Sbjct: 571 GKWKDVRRIRTIMKERKIEKVPGCSWI 597
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/361 (26%), Positives = 183/361 (50%), Gaps = 27/361 (7%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF M V D FS+ +LK+C+ + +H + K G S +++ L+ Y+
Sbjct: 112 LFCLMLENGVSVDKFSLSLVLKACSRLGLVKEGMQIHGFLKKTGLWSDLFLQNCLIGLYL 171
Query: 63 VTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP--LRNVASWSAMI 119
+ GFAR++FD +P+R++V++N+MI GY K G+ AR+ F+ MP ++N+ SW++MI
Sbjct: 172 KCGWLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSTESARELFDLMPEEMKNLISWNSMI 231
Query: 120 AAYLN-AGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
+ Y + D KLF EM + ++ + M G V G + L +V
Sbjct: 232 SGYAQTSDGVDIASKLFSEMPDKDLISWNSMIDGYVKHG--RIEDAKYLFDVMPRRDVVT 289
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
W + ++D YAK GF+ A +F+ M R+V+S+ ++I G Y+ +AL +
Sbjct: 290 --W-------STMIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMIAGYVQNRYNMEALEI 340
Query: 239 F-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDL 296
F +M + + + P+E T VL+A G + + + ++++++ L ++ ++D+
Sbjct: 341 FSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLG--VALIDM 398
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH----KQFDMAERVIKQALRMVKPE 352
+ K G ++ A V + + ++ W + + H FDM ++ + R +KP+
Sbjct: 399 YSKCGSIQHAMLVFKGIE-NKSIDHWNAMIGGLAIHGLGESAFDMLLQIER---RSIKPD 454
Query: 353 N 353
+
Sbjct: 455 D 455
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 79/200 (39%), Gaps = 37/200 (18%)
Query: 219 WTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK------ 272
W A+I +H AL LF +M GV ++ + + VL AC GLV EG +
Sbjct: 93 WNAVIKSHSHGTDPRRALLLFCLMLENGVSVDKFSLSLVLKACSRLGLVKEGMQIHGFLK 152
Query: 273 ----------------------YFKMIDEEYDLEPRIQ--HYGCMVDLFGKAGFLEEAYE 308
+ + +D P+ Y M+D + K G E A E
Sbjct: 153 KTGLWSDLFLQNCLIGLYLKCGWLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSTESARE 212
Query: 309 VIRTMRLE-PNVIIWGSFLAA-CKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366
+ M E N+I W S ++ + D+A ++ + P+ D + + D Y
Sbjct: 213 LFDLMPEEMKNLISWNSMISGYAQTSDGVDIASKLFSEM-----PDKDLISWNSMIDGYV 267
Query: 367 MNEKWEGAERVRKLMLNQNV 386
+ + E A+ + +M ++V
Sbjct: 268 KHGRIEDAKYLFDVMPRRDV 287
>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Vitis vinifera]
Length = 615
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 130/359 (36%), Positives = 212/359 (59%), Gaps = 6/359 (1%)
Query: 38 LHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGN 96
+H +K GF +V + L++ Y + ++F + E + V M+ +K G+
Sbjct: 133 VHGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMGD 192
Query: 97 VCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLS 156
V AR F++M ++ +W+AMI+ Y+ G L LF ++ EG+ +++++ +VLS
Sbjct: 193 VGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLF-NLMQREGVKVNEVSMVSVLS 251
Query: 157 GCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNV 216
CSHLG+ L G+ AH +I +N+ + + T L+DMYAKCG + A+ VF M+E+NV
Sbjct: 252 ACSHLGA--LDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNV 309
Query: 217 ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKM 276
+W++ I G A G E L LF +M+ V+PNE+TF VL C GLV+EGRK+F+
Sbjct: 310 YTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFES 369
Query: 277 IDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFD 336
+ + Y +EPR++HYGCMVDL+G+AG L+EA I +M + P+V WG+ L ACK ++ +
Sbjct: 370 MSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHVGAWGALLNACKIYRNME 429
Query: 337 MAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
M E ++ + + + G + L+ ++Y ++ W+ VR+ M + VRK G SVI
Sbjct: 430 MGELASRKIVEL--EAKNHGAYVLLSNIYADSKDWDRVSNVRQTMNVKGVRKQPGCSVI 486
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 145/345 (42%), Gaps = 75/345 (21%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHV-----YVATSLLHEYVVTSFGFARKLFD 74
+ +++ CT L IH + +L G ++ +VA+ L+ + ++ ++ D
Sbjct: 13 ISMVEPCTTLRELKQIH---TQLLINGLLNDPQLVGQFVASIALNN--PNNLHYSNQVLD 67
Query: 75 ELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKL 134
T+N+MI+ +SKS + F+ R+ L++ Y
Sbjct: 68 NSQNPTLFTFNSMIRAHSKSSTPHRSFHFYSRI---------------LHSAGY------ 106
Query: 135 FREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDM 194
L PD T ++ + L + G G S HG VK +E + + + L+ M
Sbjct: 107 ---------LAPDNYTFTFLVRTSAQLLAHG--TGSSVHGAAVKYGFEYDPHVQSGLIYM 155
Query: 195 YAKCGFLK-------------------------------YALMVFELMEERNVISWTALI 223
YA+ G L +A +F+ M ++ I+W A+I
Sbjct: 156 YAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMGDVGFARKLFDKMSHKDPIAWNAMI 215
Query: 224 CGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDL 283
G G S +ALSLF +MQ GVK NE++ VL+AC H G +D+GR I E L
Sbjct: 216 SGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQGRWAHAYI-ERNKL 274
Query: 284 EPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
+ ++D++ K G + +A EV M+ E NV W S +
Sbjct: 275 RMTLTLGTALIDMYAKCGNMNKAMEVFWGMK-EKNVYTWSSAIGG 318
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 102/227 (44%), Gaps = 39/227 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF+ M R+ V + S++ +L +C+H L G +H Y+ + L
Sbjct: 228 LSLFNLMQREGVKVNEVSMVSVLSACSHLG-----------ALDQGRWAHAYIERNKL-- 274
Query: 61 YVVTSFGFARKLFDELPERNAVTWNT-MIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
R +T T +I Y+K GN+ +A + F M +NV +WS+ I
Sbjct: 275 ------------------RMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAI 316
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
GA + L+LF ++ + + P+++T +VL GCS VGL+ H +
Sbjct: 317 GGLAMNGAGEKCLELF-SLMKQDSVQPNEITFVSVLRGCS---VVGLVEEGRKHFESMSK 372
Query: 180 EWELNEQIA--TILVDMYAKCGFLKYALMVFELMEER-NVISWTALI 223
+ + ++ +VD+Y + G L AL M R +V +W AL+
Sbjct: 373 VYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHVGAWGALL 419
>gi|345505232|gb|AEN99840.1| chlororespiratory reduction 4, partial [Olimarabidopsis pumila]
Length = 579
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 121/327 (37%), Positives = 201/327 (61%), Gaps = 4/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A+ LFD +P R+ VTW TMI GY+K G V +A+ F++MP R+V ++++M+A Y+ +
Sbjct: 237 AKDLFDMVPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVAYNSMMAGYVQNRFH 296
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L++F +M L+PD+ T+ VLS + LG + M H +IV+ ++ L ++
Sbjct: 297 MEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAM--DMHLYIVEKQFLLGGKLG 354
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+DMY+KCG +++A++VFE +E +++ W A+I G A G E A + ++ +K
Sbjct: 355 VALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIK 414
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+++TF GVL AC H+GLV EG F+++ ++ +EPR+QHYGCMVD+ ++G +E A
Sbjct: 415 PDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKN 474
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+I M +EPN +IW +FL AC HK+F+ E V K + ++ + + + L+ ++Y
Sbjct: 475 LIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLI--LQADYNPSSYVLLSNMYASF 532
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
W+ RVR +M + + K G S I
Sbjct: 533 GMWKDVRRVRTMMKERKIEKIPGCSWI 559
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/367 (24%), Positives = 183/367 (49%), Gaps = 39/367 (10%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF M VP D FS+ ++K+C+ + +H + K G S +++ L+ Y+
Sbjct: 74 LFCLMLEIGVPVDKFSLSLVMKACSRLGFVKGGLQIHGFLKKTGLWSDLFLQNCLIGLYL 133
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP--LRNVASWSAMI 119
GFAR++FD +P+R++V++N+MI GY K G++ A + F+ MP ++N+ SW+++I
Sbjct: 134 KCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSIESASELFDLMPREMKNLISWNSLI 193
Query: 120 AAYLNAG-AYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI-- 176
+ Y D KLF EM + ++ + M G V HG I
Sbjct: 194 SGYAQTSEGVDIASKLFAEMPEKDLISWNSMIDGYV-----------------KHGRIED 236
Query: 177 VKNEWELNEQIATI----LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
K+ +++ + + ++D YAK GF+ A +F+ M R+V+++ +++ G +
Sbjct: 237 AKDLFDMVPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVAYNSMMAGYVQNRFH 296
Query: 233 EDALSLF-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHY 290
+AL +F +M + + + P+E T VL+A G + + + ++++++ L ++
Sbjct: 297 MEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFLLGGKLG-- 354
Query: 291 GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH----KQFDMAERVIKQAL 346
++D++ K G ++ A V + ++ W + + H FDM ++ +
Sbjct: 355 VALIDMYSKCGSIQHAMLVFEGIE-NKSIDHWNAMIGGLAIHGLGESAFDMLLQIER--- 410
Query: 347 RMVKPEN 353
R +KP++
Sbjct: 411 RSIKPDD 417
>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 199/327 (60%), Gaps = 4/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
ARKLF E+P R+ + WNT++KGY+ +GNV FE MP RN+ SW+A+I Y + G +
Sbjct: 94 ARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLF 153
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L F+ M+S + P+ T+ VLS C+ LG++ L GK H + + + N +
Sbjct: 154 FEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDL--GKWVHVYAESSGLKGNVYVG 211
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+DMYAKCG ++ A+ VF M+ +++ISW LI G A DAL+LF M+ G K
Sbjct: 212 NALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQK 271
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+ +TF G+L AC H GLV++G YF+ + ++Y + P+I+HYGCMVD+ +AG LE+A
Sbjct: 272 PDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMA 331
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+R M +E + +IW L AC+ +K ++AE +++ + + +P+N + ++ ++Y
Sbjct: 332 FVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIEL-EPKNPAN-YVMLSNIYGDA 389
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
+WE R++ M + +K G S+I
Sbjct: 390 GRWEDVARLKVAMRDTGFKKLPGCSLI 416
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 119/266 (44%), Gaps = 45/266 (16%)
Query: 70 RKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYD 129
R++F E+ ERN V W +MI GY S ++ AR F+ P R+V W+ M++ Y+ G
Sbjct: 33 REIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMV 92
Query: 130 PGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIAT 189
KLF EM + D M VL G + G+V L G
Sbjct: 93 EARKLFHEMPNR-----DVMFWNTVLKGYATNGNVEALEG-------------------- 127
Query: 190 ILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE-MMQATGVK 248
+FE M ERN+ SW ALI G AH G + L F+ M+ + V
Sbjct: 128 -----------------LFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVP 170
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
PN+ T VL+AC G +D G K+ + E L+ + ++D++ K G +E A
Sbjct: 171 PNDATLVTVLSACARLGALDLG-KWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAIS 229
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQ 334
V R M + ++I W + + H +
Sbjct: 230 VFRGMDTK-DLISWNTLIGGLAMHSR 254
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 101/250 (40%), Gaps = 40/250 (16%)
Query: 4 FSQMHRQS-VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
F +M +S VP + +++ +L +C L + +H + G +VYV +L+ Y
Sbjct: 160 FKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMY- 218
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
+K G + A F M +++ SW+ +I
Sbjct: 219 -----------------------------AKCGIIENAISVFRGMDTKDLISWNTLIGGL 249
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
L LF +M N G PD +T +L C+H+ GL+ A+ + +++
Sbjct: 250 AMHSRGADALNLFFQM-KNAGQKPDGITFIGILCACTHM---GLVEDGFAYFQSMADDYL 305
Query: 183 LNEQIA--TILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSEDALSLF 239
+ QI +VDM A+ G L+ A+ M E + + W L+ A R Y L+
Sbjct: 306 IMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLL--GACRIYKNVELAEL 363
Query: 240 EMMQATGVKP 249
+ + ++P
Sbjct: 364 ALQRLIELEP 373
>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 462
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 128/359 (35%), Positives = 216/359 (60%), Gaps = 36/359 (10%)
Query: 38 LHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNV 97
+HS +++ GF S +YV SLLH Y + G+V
Sbjct: 10 IHSVVIRSGFGSLIYVQNSLLHLY------------------------------ANCGDV 39
Query: 98 CEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSG 157
A F++MP +++ +W+++I + G + L L+ EM +++G+ PD TI ++LS
Sbjct: 40 ASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEM-NSKGIKPDGFTIVSLLSA 98
Query: 158 CSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVI 217
C+ +G+ L +GK H +++K N + +L+D+YA+CG ++ A +F+ M ++N +
Sbjct: 99 CAKIGA--LTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSV 156
Query: 218 SWTALICGSAHRGYSEDALSLFEMMQAT-GVKPNEMTFTGVLTACVHTGLVDEGRKYFKM 276
SWT+LI G A G+ ++A+ LF+ M++T G+ P E+TF G+L AC H G+V EG +YF+
Sbjct: 157 SWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRR 216
Query: 277 IDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFD 336
+ EEY +EPRI+H+GCMVDL +AG +++AYE I++M ++PNV+IW + L AC H D
Sbjct: 217 MREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSD 276
Query: 337 MAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+AE Q L++ +P N G + L+ ++Y ++W +++RK ML V+K G S++
Sbjct: 277 LAEFARIQILQL-EP-NHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLV 333
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 117/257 (45%), Gaps = 46/257 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+++M+ + + D F+I+ +L +C LT+ +H +++K+G
Sbjct: 74 LALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLT------------ 121
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
RN + N ++ Y++ G V EA+ F+ M +N SW+++I
Sbjct: 122 ------------------RNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIV 163
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF----I 176
G ++LF+ M S EGL P ++T +L CSH G V GF
Sbjct: 164 GLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMV-------KEGFEYFRR 216
Query: 177 VKNEWELNEQIATI--LVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSE 233
++ E+++ +I +VD+ A+ G +K A + M + NV+ W L+ G S+
Sbjct: 217 MREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSD 276
Query: 234 DALSLFEMMQATGVKPN 250
L+ F +Q ++PN
Sbjct: 277 --LAEFARIQILQLEPN 291
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 88/162 (54%), Gaps = 4/162 (2%)
Query: 168 MGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSA 227
+G++ H ++++ + + L+ +YA CG + A VF+ M E+++++W ++I G A
Sbjct: 6 LGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFA 65
Query: 228 HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPR 286
G E+AL+L+ M + G+KP+ T +L+AC G + G++ + MI + L
Sbjct: 66 ENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMI--KVGLTRN 123
Query: 287 IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
+ ++DL+ + G +EEA + M ++ N + W S +
Sbjct: 124 LHSSNVLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLIVG 164
>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 137/397 (34%), Positives = 222/397 (55%), Gaps = 18/397 (4%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
M LF +M ++V S + +++ +L C L + + IS + LL E
Sbjct: 181 MYLFEKMPERNVVSWN-TVMSMLAQCGRIEE---ARRLFDRMPERDVISWTAMIAGLLDE 236
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
A LF+ +PER+ +WNTMI G ++G++ AR F MP +NV SW+ MI
Sbjct: 237 --------ALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMIT 288
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
+ G + LK+F M+S G P+Q T +VL CS+L GL G+ H I K
Sbjct: 289 GCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLA--GLGEGQQVHQIISKTV 346
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFE--LMEERNVISWTALICGSAHRGYSEDALSL 238
++ + + + L++MY+KCG L A +F+ + +R+++SW +I AH GY ++A++
Sbjct: 347 YQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINF 406
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F+ M+ +G KP+++T+ G+L+AC H GLV+EG KYF + ++ + R HY C+VDL G
Sbjct: 407 FKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCG 466
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG L+EA+ I + +P+ +WG+ LA C H + ++ K+ L V+PEN G +
Sbjct: 467 RAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGKQAAKKLLE-VEPEN-AGTY 524
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y KW A RVR M ++ ++K G S I
Sbjct: 525 LLLSNIYASTGKWREAARVRLKMKDKGLKKQPGCSWI 561
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 138/288 (47%), Gaps = 31/288 (10%)
Query: 69 ARKLFDEL-PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
AR+LFD + ++N VTW M+ GY +S + +A F MP +NV SW+ MI Y G
Sbjct: 117 ARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGR 176
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
D + LF +M ++ + T+ ++L+ C + L + ++ W I
Sbjct: 177 IDSAMYLFEKMPERNVVSWN--TVMSMLAQCGRIEEARRLFDRMPERDVI--SW--TAMI 230
Query: 188 ATIL---VDMYAKC------------------GFLKYALMVFELMEERNVISWTALICGS 226
A +L +D++ + G L+ A +F M ++NVISWT +I G
Sbjct: 231 AGLLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGC 290
Query: 227 AHRGYSEDALSLFEMMQAT-GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP 285
G SE+AL +F M +T G KPN+ TF VL AC + + EG++ ++I + +
Sbjct: 291 VQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTV-YQD 349
Query: 286 RIQHYGCMVDLFGKAGFLEEAYEVIRT-MRLEPNVIIWGSFLAACKEH 332
+++++ K G L A ++ M + +++ W +AA H
Sbjct: 350 STFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHH 397
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 139/319 (43%), Gaps = 28/319 (8%)
Query: 43 LKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARD 102
LKL I Y+ S+ ++Y RK F + N N MI SK G + EAR
Sbjct: 32 LKLLRIPGFYLYHSI-NDYRTAKISIPRKDF--TVDGNVARCNWMITNLSKDGRIMEARR 88
Query: 103 FFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLG 162
F+ M +V +W+ +I+ Y+ G + +LF + + + + +G + + +
Sbjct: 89 LFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRS-NKIS 147
Query: 163 SVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTAL 222
L + + +V W ++D YA+ G + A+ +FE M ERNV+SW +
Sbjct: 148 DAEKLFNEMPNKNVV--SW-------NTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTV 198
Query: 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD 282
+ A G E+A LF+ M V +++T ++ GL+DE F+ + E
Sbjct: 199 MSMLAQCGRIEEARRLFDRMPERDV----ISWTAMI-----AGLLDEALDLFERMPER-- 247
Query: 283 LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVI 342
+ + M+ + G L A ++ M + NVI W + + C + + + A ++
Sbjct: 248 ---DLPSWNTMITGLIQNGDLRRARKLFNEMP-KKNVISWTTMITGCVQEGESEEALKIF 303
Query: 343 KQALRMVKPENDGGVFTLI 361
+ L + + G F +
Sbjct: 304 SRMLSTNGAKPNQGTFVSV 322
>gi|242084708|ref|XP_002442779.1| hypothetical protein SORBIDRAFT_08g002705 [Sorghum bicolor]
gi|241943472|gb|EES16617.1| hypothetical protein SORBIDRAFT_08g002705 [Sorghum bicolor]
Length = 560
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 139/420 (33%), Positives = 225/420 (53%), Gaps = 50/420 (11%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIH----------HLHSHILKLGFISH 50
+ LF+ + S+P+ + +LKSC L+ LH +LKLG
Sbjct: 129 LTLFNHVSSLSIPTPLPAFPALLKSCARAFRLSRRARAAVFAAKGAELHCRVLKLGCGQD 188
Query: 51 VYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNV------------ 97
YV +L+ Y G ARK FDE+P +NAV+WN ++ + SG++
Sbjct: 189 RYVQNALVSMYGQFGRLGEARKAFDEMPVKNAVSWNALVVAHGVSGDLQGAERVSQATPE 248
Query: 98 -------------------CEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM 138
EA F MP R+V SW+++I+ Y G Y L +FR+M
Sbjct: 249 RNISWWNSEIMRNVRLGDLVEAARIFRDMPERDVISWNSLISGYAKLGMYSRALDVFRDM 308
Query: 139 ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198
N+ + P ++T+ + L C+ +G L +G+ H ++ E + + LVDMYAKC
Sbjct: 309 WKND-IEPTELTVVSALGACAEVGE--LELGRGIHDYLKSKGIEADGYVGNALVDMYAKC 365
Query: 199 GFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL 258
G LK A VF+ M ++V W +I G + G+S DAL LF++M ++P+ +TF GVL
Sbjct: 366 GNLKLARQVFDSMSIKDVTCWNTMIVGLSVHGHSHDALKLFDLMN---IEPDHVTFLGVL 422
Query: 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPN 318
TAC H+GL++EGR YFK + E+Y + P ++HYGC++++ + G + EAY++I M ++ N
Sbjct: 423 TACSHSGLLNEGRVYFKSMIEDYKIVPSMKHYGCIINMLCRYGKVHEAYQMINDMPVKAN 482
Query: 319 VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVR 378
++W +AAC+ H FD+A+R + + + + P +DG V T + + Y E+W+ E +R
Sbjct: 483 SVLWKMVMAACRVHGHFDIADRAVHR-MHELMPMDDGDVIT-VSNAYAEAERWDDVEHLR 540
>gi|222616851|gb|EEE52983.1| hypothetical protein OsJ_35654 [Oryza sativa Japonica Group]
Length = 632
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 134/357 (37%), Positives = 209/357 (58%), Gaps = 18/357 (5%)
Query: 42 ILKLGFISHVYV-----ATSL-LHEYVVTSFG------FARKLFDELPERNAVTWNTMIK 89
+L G + H YV A S+ L +V FG +AR++FD + ++ +W +M+
Sbjct: 260 LLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVN 319
Query: 90 GYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQM 149
Y+K G++ A F+ MP RNV SWS MIAAY + + LFREMI+ G+ P
Sbjct: 320 AYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIA-AGVDPIDA 378
Query: 150 TIGAVLSGCSHLGSVGLLMGKSAH-GFIVKNEWELNEQIATILVDMYAKCGFLKYALMVF 208
T+ +VLS C+ LG + L G+ + +IV N+ L + L+DM+AKCG + A +F
Sbjct: 379 TLVSVLSACAQLGCLDL--GRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLF 436
Query: 209 ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
+ M ERNV+SW +I A G SE+A+ LFE ++ + P+++TF G+L +C H+GLV
Sbjct: 437 DEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVS 496
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
EGR+YFK ++ Y +EPR++HY CM+DL GK G LEEA+EV R M +E + WG+ L A
Sbjct: 497 EGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNA 556
Query: 329 CKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQN 385
C+ H ++ V + + + +D G++ L+ +Y KW+ + +R M ++
Sbjct: 557 CRMHGNVEIGACVADKLVEL--DPSDSGIYVLMSQIYASKNKWDQVKMLRMTMRDRG 611
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/384 (26%), Positives = 167/384 (43%), Gaps = 75/384 (19%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILK------SCTHFNNLTVIHHLHSHILKLGFISH-VYV 53
+ LF ++ R +P+D+ + + +K H + +H LK GF+ V V
Sbjct: 121 LGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGGTPSGGEAIHCAALKCGFVGESVLV 180
Query: 54 ATSLLHEYVV-TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNV 112
+L+H Y S A K+FDE+PER+ V+W T++ GY++
Sbjct: 181 GNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYAR------------------- 221
Query: 113 ASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL-MGKS 171
AG D +LF M+ G+ P+ +T+ A +S +G +GLL G
Sbjct: 222 ------------AGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSA---IGQMGLLAFGIM 266
Query: 172 AHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME------------------- 212
H ++ + + + LVDM+ KCG ++YA VF+ ME
Sbjct: 267 LHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGD 326
Query: 213 ------------ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260
RNV+SW+ +I + E+A+ LF M A GV P + T VL+A
Sbjct: 327 LESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSA 386
Query: 261 CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVI 320
C G +D GR ++ + + ++D+F K G + EA ++ M E NV+
Sbjct: 387 CAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMA-ERNVV 445
Query: 321 IWGSFLAACKEHKQFDMAERVIKQ 344
W + + A H Q + A R+ +Q
Sbjct: 446 SWNTMIMAHAVHGQSEEAIRLFEQ 469
>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
Length = 921
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 143/458 (31%), Positives = 235/458 (51%), Gaps = 72/458 (15%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ FS M R+ DSF+ ++K+ + + + +HSH++KLG + +V +L+
Sbjct: 425 LAAFSAMPRR----DSFTYSFLIKALS-AAGVAPVRAVHSHVVKLGSVEDTFVGNALIDA 479
Query: 61 YV-------------------VTSFGFA-------------RKLFDELPERNAVTWNTMI 88
Y V S+ A RKLFDE+PE++ V+WNT++
Sbjct: 480 YSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTIL 539
Query: 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMIS-------- 140
GY+K+G V A + F+RMP RNV SWS M++ Y G + +F +M S
Sbjct: 540 DGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTI 599
Query: 141 ------NEGLTP----------------DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
+GL D + ++L+ C+ GS L +GK H ++ K
Sbjct: 600 MVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGS--LSLGKRIHRYVRK 657
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSEDALS 237
+ + L+DM+ KCG + A VF+ +++ +SW ++I G A G+ + AL
Sbjct: 658 RNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALE 717
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LF M+ G P+ +T VL+AC H G VDEGR++F ++ +Y + P+I+HYGCM+DL
Sbjct: 718 LFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLL 777
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
G+ G ++EA ++I++M EPN +IWGS L+AC+ HK + AE + + L ++P N G
Sbjct: 778 GRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNE-LSKLQPSN-AGN 835
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++ ++Y +W + R M +K GSS +
Sbjct: 836 YAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWV 873
>gi|224094065|ref|XP_002310070.1| predicted protein [Populus trichocarpa]
gi|222852973|gb|EEE90520.1| predicted protein [Populus trichocarpa]
Length = 438
Score = 251 bits (641), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 133/361 (36%), Positives = 217/361 (60%), Gaps = 9/361 (2%)
Query: 38 LHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGN 96
+H H++K GF +VA SL+H Y +ARK+FD P +N V+WN+M+ GY+K G
Sbjct: 32 IHGHVIKSGFEIDRFVANSLIHMYGSCGDIVYARKVFDGTPVKNLVSWNSMVDGYAKCGY 91
Query: 97 VCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLS 156
+ AR F+ MP R+V SWS +I Y +G Y + +F +M ++ G +++T+ +VL
Sbjct: 92 LDLARGLFDLMPERDVRSWSCLIDGYAKSGNYGDAMAVFEKMRTS-GPKANEVTMVSVLC 150
Query: 157 GCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER-- 214
C+HLG+ L G+ H ++V N +ELN + T L+DMYAKCG ++ A VF + R
Sbjct: 151 ACAHLGA--LDKGRMMHQYLVDNGFELNLVLRTSLIDMYAKCGAVEEAFAVFRGVSLRKS 208
Query: 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF 274
+V+ W A+I G A G +++L L+ MQ G+KP+E+TF +L+AC H GLV + F
Sbjct: 209 DVLIWNAMIGGLATHGLVKESLDLYTEMQIAGIKPDEITFLCLLSACAHGGLVKQASYVF 268
Query: 275 KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
+ + + + P+ +HY CMVD+ +AG + EAY+ + M LEP + G+ L+ C H +
Sbjct: 269 EGLGKN-GMTPKTEHYACMVDVMARAGQVAEAYQFLCQMPLEPTASMLGALLSGCMNHGK 327
Query: 335 FDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSV 394
D+AE + K+ + + PE+D G + + ++Y + +W+ A +R+ M + V+K G S
Sbjct: 328 LDLAELIGKKLIEL-DPEHD-GRYVGLSNVYAIGRRWDEARIMREAMERRGVKKTPGYSF 385
Query: 395 I 395
+
Sbjct: 386 L 386
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 112/223 (50%), Gaps = 37/223 (16%)
Query: 143 GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLK 202
G+ PD +T + S L + +G S HG ++K+ +E++ +A L+ MY CG +
Sbjct: 5 GIYPDHLTYPFLAKATSRL--LRKELGVSIHGHVIKSGFEIDRFVANSLIHMYGSCGDIV 62
Query: 203 YALMV-------------------------------FELMEERNVISWTALICGSAHRGY 231
YA V F+LM ER+V SW+ LI G A G
Sbjct: 63 YARKVFDGTPVKNLVSWNSMVDGYAKCGYLDLARGLFDLMPERDVRSWSCLIDGYAKSGN 122
Query: 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK-MIDEEYDLEPRIQHY 290
DA+++FE M+ +G K NE+T VL AC H G +D+GR + ++D ++L ++
Sbjct: 123 YGDAMAVFEKMRTSGPKANEVTMVSVLCACAHLGALDKGRMMHQYLVDNGFELNLVLRT- 181
Query: 291 GCMVDLFGKAGFLEEAYEVIRTMRL-EPNVIIWGSFLAACKEH 332
++D++ K G +EEA+ V R + L + +V+IW + + H
Sbjct: 182 -SLIDMYAKCGAVEEAFAVFRGVSLRKSDVLIWNAMIGGLATH 223
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 85/203 (41%), Gaps = 39/203 (19%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
M +F +M ++ +++ +L +C H L +H +++ GF
Sbjct: 127 MAVFEKMRTSGPKANEVTMVSVLCACAHLGALDKGRMMHQYLVDNGF------------- 173
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR--NVASWSAM 118
E N V ++I Y+K G V EA F + LR +V W+AM
Sbjct: 174 -----------------ELNLVLRTSLIDMYAKCGAVEEAFAVFRGVSLRKSDVLIWNAM 216
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF--I 176
I G L L+ EM G+ PD++T +LS C+H G L+ ++++ F +
Sbjct: 217 IGGLATHGLVKESLDLYTEM-QIAGIKPDEITFLCLLSACAH----GGLVKQASYVFEGL 271
Query: 177 VKNEWELNEQIATILVDMYAKCG 199
KN + +VD+ A+ G
Sbjct: 272 GKNGMTPKTEHYACMVDVMARAG 294
>gi|125542569|gb|EAY88708.1| hypothetical protein OsI_10183 [Oryza sativa Indica Group]
Length = 510
Score = 251 bits (641), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 150/409 (36%), Positives = 228/409 (55%), Gaps = 22/409 (5%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTH-FNNLTVIHHLHSHILKLGFI----SHVYVAT 55
++LF+ M R D+F+ LKSC+ + + LH+ +K G + SHV+V
Sbjct: 106 IELFAAMRRAGAAPDAFTFTFALKSCSRCVSQRRLPSDLHAQAIKHGCLGAGSSHVHVHN 165
Query: 56 SLLHEYVV-TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVAS 114
+LLH Y + G AR++FDE+P R+ ++++ ++ + K+ ++ AR F++MP R+V S
Sbjct: 166 ALLHGYSSRAAVGDARRVFDEMPARDVISFSGLLTLHLKANDLDAARVVFDQMPHRDVVS 225
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
W+AMI+AY A L LF M + PD++T+ +V+S C+ LG L G+
Sbjct: 226 WTAMISAYARARRPREALALFDAMP----VQPDEVTMLSVVSACTALGD--LATGERVCQ 279
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
++ N + + L+DMYAKCG L A +F+ M R++ SW I A G E
Sbjct: 280 YVDSNGFGWMVSLRNALMDMYAKCGSLTEARNLFDGMTVRSLASWNTFISAYASHGDVES 339
Query: 235 ALSLFEMMQATG--VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE----EYDLEPRIQ 288
++LF M A G VKP+ T VLTA H G V+EGR F I + DL I+
Sbjct: 340 TVALFHRMLADGKSVKPDGTTLLAVLTAYAHKGFVEEGRAMFNAILSGNYGKVDLT--IE 397
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348
HYGCMVDL G+AG LEEAY++I M + N ++WG+ L AC+ H +MAER + Q LR
Sbjct: 398 HYGCMVDLLGRAGQLEEAYKMIEQMPIPSNSVVWGALLGACRTHGDINMAERAV-QKLRS 456
Query: 349 VKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
+ PE +GG + L+ D+Y + + A +R++M +K G S S+
Sbjct: 457 LNPE-EGGYYILLSDMYAASGRTTEAMEIRRIMNQAGAQKTAGQSSWST 504
>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
Length = 1033
Score = 251 bits (641), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 141/413 (34%), Positives = 225/413 (54%), Gaps = 43/413 (10%)
Query: 17 FSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLF 73
FSI +LK+C +H +LK +V S++ Y+ FG AR++F
Sbjct: 110 FSIPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYI--DFGEIELARRVF 167
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRN---------------------- 111
D +P R+ V+WN+MI GY K+G + A + F+ MP R+
Sbjct: 168 DRMPNRDVVSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGKCGRCELAEK 227
Query: 112 ---------VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLG 162
V +W++MI+AY+ L LFREM+S GL PD I +VLS + LG
Sbjct: 228 VFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLS-LGLRPDGPAIVSVLSAIADLG 286
Query: 163 SVGLLMGKSAHGFIVKNEWELNEQ-IATILVDMYAKCGFLKYALMVFE-LMEERNVISWT 220
V GK H ++ N+ EL+ I + L+DMY+KCG+++ A VF + RN+ W
Sbjct: 287 FVE--EGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWN 344
Query: 221 ALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE 280
++I G A G + +AL +F M+ ++PNE+TF G+L+ C H GLV+EG+ YF+ + E+
Sbjct: 345 SMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEK 404
Query: 281 YDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAER 340
Y + PRIQHYGCM+DLFG+AG LE+A VI+ M E +++ W + L+A +H ++ +
Sbjct: 405 YKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKS 464
Query: 341 VIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
+A+ + +D + L+ ++Y +W+ ++R +M + V+K G S
Sbjct: 465 AALRAIELAP--DDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCS 515
>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g22410, mitochondrial; Flags: Precursor
gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
Length = 681
Score = 251 bits (641), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 133/394 (33%), Positives = 218/394 (55%), Gaps = 6/394 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
++ M + V D +++ ++ SC+ +L + ++ + G + + +L+ +
Sbjct: 244 VYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFS 303
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
AR++FD L +R V+W TMI GY++ G + +R F+ M ++V W+AMI
Sbjct: 304 KCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGG 363
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
+ A L LF+EM PD++T+ LS CS LG+ L +G H +I K
Sbjct: 364 SVQAKRGQDALALFQEM-QTSNTKPDEITMIHCLSACSQLGA--LDVGIWIHRYIEKYSL 420
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
LN + T LVDMYAKCG + AL VF ++ RN +++TA+I G A G + A+S F
Sbjct: 421 SLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNE 480
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M G+ P+E+TF G+L+AC H G++ GR YF + ++L P+++HY MVDL G+AG
Sbjct: 481 MIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAG 540
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
LEEA ++ +M +E + +WG+ L C+ H ++ E+ K+ L + +D G++ L+
Sbjct: 541 LLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLEL--DPSDSGIYVLL 598
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+Y WE A+R R++M + V K G S I
Sbjct: 599 DGMYGEANMWEDAKRARRMMNERGVEKIPGCSSI 632
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 156/345 (45%), Gaps = 76/345 (22%)
Query: 3 LFSQMHR----QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGF--ISHVYVATS 56
L+ QM R +S P D F+ + K C ++ H + H+LKL +SHV+ A+
Sbjct: 140 LYKQMLRHGCCESRP-DHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHNAS- 197
Query: 57 LLHEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASW 115
+H + ARK+FDE P R+ V+WN +I GY K G +A
Sbjct: 198 -IHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKA--------------- 241
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
I Y +++ +EG+ PD +T+ ++S CS LG + GK + +
Sbjct: 242 ---IYVY--------------KLMESEGVKPDDVTMIGLVSSCSMLGDLN--RGKEFYEY 282
Query: 176 IVKNEWELNEQIATILVDM-------------------------------YAKCGFLKYA 204
+ +N + + L+DM YA+CG L +
Sbjct: 283 VKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVS 342
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
+F+ MEE++V+ W A+I GS +DAL+LF+ MQ + KP+E+T L+AC
Sbjct: 343 RKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQL 402
Query: 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEV 309
G +D G + I E+Y L + +VD++ K G + EA V
Sbjct: 403 GALDVGIWIHRYI-EKYSLSLNVALGTSLVDMYAKCGNISEALSV 446
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 127/274 (46%), Gaps = 33/274 (12%)
Query: 68 FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
++ K+ + N +WN I+G+S+S N E+ +++M LR+ S
Sbjct: 105 YSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQM-LRHGCCES----------- 152
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
PD T + C+ L L G G ++K EL +
Sbjct: 153 -----------------RPDHFTYPVLFKVCADLRLSSL--GHMILGHVLKLRLELVSHV 193
Query: 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
+ M+A CG ++ A VF+ R+++SW LI G G +E A+ ++++M++ GV
Sbjct: 194 HNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGV 253
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
KP+++T G++++C G ++ G+++++ + E L I ++D+F K G + EA
Sbjct: 254 KPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKEN-GLRMTIPLVNALMDMFSKCGDIHEAR 312
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERV 341
+ + + ++ W + ++ D++ ++
Sbjct: 313 RIFDNLE-KRTIVSWTTMISGYARCGLLDVSRKL 345
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 101/236 (42%), Gaps = 37/236 (15%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF +M + D +++H L +C+ L V +H +I K +V + TSL
Sbjct: 374 LALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSL--- 430
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ Y+K GN+ EA F + RN +++A+I
Sbjct: 431 ---------------------------VDMYAKCGNISEALSVFHGIQTRNSLTYTAIIG 463
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
G + F EMI + G+ PD++T +LS C H G++ + +K+
Sbjct: 464 GLALHGDASTAISYFNEMI-DAGIAPDEITFIGLLSACCH---GGMIQTGRDYFSQMKSR 519
Query: 181 WELNEQIA--TILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSE 233
+ LN Q+ +I+VD+ + G L+ A + E M E + W AL+ G G E
Sbjct: 520 FNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVE 575
>gi|357118276|ref|XP_003560882.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 508
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 133/421 (31%), Positives = 224/421 (53%), Gaps = 37/421 (8%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH--- 59
L+ ++ + DSF+ ++L++C + +H ++KLG+ +V +L++
Sbjct: 84 LYRRIEAARLKPDSFTFCYLLRACAGLPGSCAGYQVHGAVVKLGYFKDAFVRNALINMHA 143
Query: 60 ------------------EYVVTS-----------FGFARKLFDELPERNAVTWNTMIKG 90
+ V S AR+LFDE ++ V WN M+
Sbjct: 144 KCGDLLVAGTLLDEAGERDVVARSAVIAGHAAKGELDIARQLFDECQHKDLVCWNVMVAA 203
Query: 91 YSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMT 150
Y+K G + +AR +R P ++V SW+ +I Y G L++ EM GL PD+ T
Sbjct: 204 YAKYGEMEKARGLLDRAPEKDVVSWNTIITGYTAKGLLKEALEVLDEM-RCVGLMPDEAT 262
Query: 151 IGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFEL 210
I ++LS C++LGS+G G+ H ++ ++ LV MYAKCG ++ A+ VF
Sbjct: 263 IVSLLSCCANLGSLG--TGRMIHSLHLEGRPCISILPGNALVSMYAKCGDVQAAMEVFSR 320
Query: 211 MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
M+ER+V +W ++I G A G +E ++ F M G+ PNE++F VL AC H GLV++G
Sbjct: 321 MKERDVWTWNSIIGGLAFHGQAEQSVQFFNKMLDEGLCPNEISFLCVLGACSHAGLVEDG 380
Query: 271 RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330
++YF ++ Y +EP +HY C+VD+ G++G L+EA+ ++ +MR EP V+IW + L AC+
Sbjct: 381 QRYFSLMINRYRIEPNARHYSCIVDMLGRSGLLDEAFAIVSSMRCEPAVVIWRTLLGACR 440
Query: 331 EHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKAR 390
H + + ++ L+M E+ G + L+ +Y ++W G E VR M + +RK
Sbjct: 441 IHGDVALGKLARERLLKM--NEDASGDYVLLSGIYASCDEWFGVETVRGSMDERGIRKVA 498
Query: 391 G 391
G
Sbjct: 499 G 499
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 90/391 (23%), Positives = 159/391 (40%), Gaps = 46/391 (11%)
Query: 31 NLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDELPERNAVTWNTM 87
N + +H +++ G S + LL V + G +ARK+FD + + N M
Sbjct: 9 NPRSLKQIHGNLVVKGITSRLQPLRELLLACVASFNGGMDYARKVFDGISHPDLFMHNVM 68
Query: 88 IKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPG-------------LKL 134
++GY+ S A + R+ + S L A A PG L
Sbjct: 69 VRGYAHSAAPAAAFVLYRRIEAARLKPDSFTFCYLLRACAGLPGSCAGYQVHGAVVKLGY 128
Query: 135 FREMISNEGLTPDQMTIGAVLSGCSHLGSVGL--LMGKSA--HGFIVKNEWELNEQIA-- 188
F++ L G +L + L G ++ +SA G K E ++ Q+
Sbjct: 129 FKDAFVRNALINMHAKCGDLLVAGTLLDEAGERDVVARSAVIAGHAAKGELDIARQLFDE 188
Query: 189 ---------TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
++V YAK G ++ A + + E++V+SW +I G +G ++AL +
Sbjct: 189 CQHKDLVCWNVMVAAYAKYGEMEKARGLLDRAPEKDVVSWNTIITGYTAKGLLKEALEVL 248
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR----IQHYGCMVD 295
+ M+ G+ P+E T +L+ C + G + GR + LE R I +V
Sbjct: 249 DEMRCVGLMPDEATIVSLLSCCANLGSLGTGRMIHSL-----HLEGRPCISILPGNALVS 303
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
++ K G ++ A EV M+ E +V W S + H Q + + + + L N+
Sbjct: 304 MYAKCGDVQAAMEVFSRMK-ERDVWTWNSIIGGLAFHGQAEQSVQFFNKMLDEGLCPNE- 361
Query: 356 GVFTLICDLYTMNEKW--EGAERVRKLMLNQ 384
+ +C L + E +R LM+N+
Sbjct: 362 --ISFLCVLGACSHAGLVEDGQRYFSLMINR 390
>gi|356498922|ref|XP_003518295.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Glycine max]
Length = 682
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 133/390 (34%), Positives = 226/390 (57%), Gaps = 11/390 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF M D + + +L SC+ + + + + ++ F S+ +V T+LL
Sbjct: 249 VRLFDDMLSSGNEPDETTWVTVLSSCSSLGDPCLAESIVRKLDRMNFRSNYFVKTALLDM 308
Query: 61 YV-VTSFGFARKLFDELP-ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
+ + A+K+F++L +N+VTWN MI Y++ G++ ARD F +MP RN SW++M
Sbjct: 309 HAKCGNLEVAQKIFEQLGVYKNSVTWNAMISAYARVGDLSLARDLFNKMPERNTVSWNSM 368
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
IA Y G ++LF+EMIS++ PD++T+ +V S C HLG +GL G A + +
Sbjct: 369 IAGYAQNGESLKAIQLFKEMISSKDSKPDEVTMVSVFSACGHLGRLGL--GNWAVSILHE 426
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
N +L+ L+ MY +CG ++ A + F+ M ++++S+ LI G A G+ +++ L
Sbjct: 427 NHIKLSISGYNSLIFMYLRCGSMEDARITFQEMATKDLVSYNTLISGLAAHGHGTESIKL 486
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
M+ G+ P+ +T+ GVLTAC H GL++EG K F+ I P + HY CM+D+ G
Sbjct: 487 MSKMKEDGIGPDRITYIGVLTACSHAGLLEEGWKVFESIK-----VPDVDHYACMIDMLG 541
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+ G LEEA ++I++M +EP+ I+GS L A HKQ ++ E + + V+P N G +
Sbjct: 542 RVGKLEEAVKLIQSMPMEPHAGIYGSLLNATSIHKQVELGELAAAKLFK-VEPHNSGN-Y 599
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRK 388
L+ ++Y + +W+ ++VR M Q V+K
Sbjct: 600 VLLSNIYALAGRWKDVDKVRDKMRKQGVKK 629
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 115/419 (27%), Positives = 190/419 (45%), Gaps = 91/419 (21%)
Query: 38 LHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDELPER--------------- 79
LH+++LKLG +V +++ Y +G ARKLFDE+P+R
Sbjct: 121 LHAYLLKLGHSHDHHVRNAIMGIYA--KYGCIELARKLFDEMPDRTAADWNVIISGYWKC 178
Query: 80 ------------------NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
N +TW TM+ G++K N+ AR +F+ MP R VASW+AM++
Sbjct: 179 GNEKEATRLFCMMGESEKNVITWTTMVTGHAKMRNLETARMYFDEMPERRVASWNAMLSG 238
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y +GA ++LF +M+S+ G PD+ T VLS CS LG L +S + + +
Sbjct: 239 YAQSGAAQETVRLFDDMLSS-GNEPDETTWVTVLSSCSSLGDPCL--AESIVRKLDRMNF 295
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFEL------------------------------- 210
N + T L+DM+AKCG L+ A +FE
Sbjct: 296 RSNYFVKTALLDMHAKCGNLEVAQKIFEQLGVYKNSVTWNAMISAYARVGDLSLARDLFN 355
Query: 211 -MEERNVISWTALICGSAHRGYSEDALSLF-EMMQATGVKPNEMTFTGVLTACVHTGLVD 268
M ERN +SW ++I G A G S A+ LF EM+ + KP+E+T V +AC H G +
Sbjct: 356 KMPERNTVSWNSMIAGYAQNGESLKAIQLFKEMISSKDSKPDEVTMVSVFSACGHLGRLG 415
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
G ++ E + ++ I Y ++ ++ + G +E+A + M + +++ + + ++
Sbjct: 416 LGNWAVSILHENH-IKLSISGYNSLIFMYLRCGSMEDARITFQEMATK-DLVSYNTLISG 473
Query: 329 CKEHKQFDMAERVIKQALRMVKPENDG---------GVFTLICDLYTMNEKWEGAERVR 378
H + ++ M K + DG GV T + E W+ E ++
Sbjct: 474 LAAHGHGTESIKL------MSKMKEDGIGPDRITYIGVLTACSHAGLLEEGWKVFESIK 526
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 132/317 (41%), Gaps = 50/317 (15%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
N ++ Y+K G + AR F+ MP R A W+ +I+ Y G +LF
Sbjct: 138 NAIMGIYAKYGCIELARKLFDEMPDRTAADWNVIISGYWKCGNEKEATRLF--------- 188
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
+MG+S I W T +V +AK L+ A
Sbjct: 189 ---------------------CMMGESEKNVIT---W-------TTMVTGHAKMRNLETA 217
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
M F+ M ER V SW A++ G A G +++ + LF+ M ++G +P+E T+ VL++C
Sbjct: 218 RMYFDEMPERRVASWNAMLSGYAQSGAAQETVRLFDDMLSSGNEPDETTWVTVLSSCSSL 277
Query: 265 GLVDEGRKYFKMIDEEYDLEPRIQHY--GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
G + +D + R ++ ++D+ K G LE A ++ + + N + W
Sbjct: 278 GDPCLAESIVRKLDR---MNFRSNYFVKTALLDMHAKCGNLEVAQKIFEQLGVYKNSVTW 334
Query: 323 GSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382
+ ++A +A + + PE + + + Y N + A ++ K M+
Sbjct: 335 NAMISAYARVGDLSLARDLFNKM-----PERNTVSWNSMIAGYAQNGESLKAIQLFKEMI 389
Query: 383 NQNVRKARGSSVISSLS 399
+ K +++S S
Sbjct: 390 SSKDSKPDEVTMVSVFS 406
>gi|297846530|ref|XP_002891146.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336988|gb|EFH67405.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 554
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 141/401 (35%), Positives = 229/401 (57%), Gaps = 13/401 (3%)
Query: 1 MQLFSQMHRQS-VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+ +F +M R+S + +D +I+ L +C+ NL + ++ +++ F V +L+
Sbjct: 116 ISVFQRMSRESNLKADEGTIVSTLSACSVLKNLEIGERIYRYVVT-EFEMSVRTGNALVD 174
Query: 60 EYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
+ AR +FD + ++N W +M+ GY +G EAR+ FER P+++V W+AM
Sbjct: 175 MFCKCGCLDKARAIFDSMRDKNVKCWTSMVSGYVSNGRTDEARELFERSPVKDVVLWTAM 234
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
+ Y+ +D L+LFR M + + PD + ++L+GC+ G+ L GK HG+I +
Sbjct: 235 MNGYVQFNRFDEALELFRCMQTAR-IRPDNFVLVSLLTGCAQTGA--LEQGKWIHGYIRE 291
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
N +++ + T LVDMYAKCG ++ AL VF M+ER+ SWT+LI G A G S AL L
Sbjct: 292 NRVTVDKVVGTALVDMYAKCGCIETALGVFYEMKERDTASWTSLIYGLATNGMSGRALDL 351
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
+ M+ GV+ +++TF VLTAC H G V EGR+ F + E + ++P+ +HY C++DL
Sbjct: 352 YYEMENVGVRLDDITFVAVLTACSHGGFVAEGRRIFYSMTERHKIQPKSEHYSCLIDLLC 411
Query: 299 KAGFLEEAYEVIRTMRLEPN---VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE-ND 354
+AG L+EA E+I M E + V ++ S L+A + + +AERV A ++ K E +D
Sbjct: 412 RAGLLDEAEELIDKMHGERDKTLVPVYCSLLSAARNYGNVKIAERV---AEKLEKVEVSD 468
Query: 355 GGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
TL+ +Y +WE VR+ M + +RK G S I
Sbjct: 469 SSAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSI 509
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 89/358 (24%), Positives = 156/358 (43%), Gaps = 68/358 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF ++ Q + D+F++ +LKS + +H + +K G S YV SL+
Sbjct: 15 LALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKTGLESDSYVCNSLMGM 74
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + K+FDE+PER+ V+WN +I
Sbjct: 75 YAALGKMEITHKVFDEMPERDVVSWNGLI------------------------------- 103
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
++Y+ G ++ + +F+ M L D+ TI + LS CS L + L +G+ + ++V
Sbjct: 104 SSYVGHGRFEDAISVFQRMSRESNLKADEGTIVSTLSACSVLKN--LEIGERIYRYVV-T 160
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS------- 232
E+E++ + LVDM+ KCG L A +F+ M ++NV WT+++ G G +
Sbjct: 161 EFEMSVRTGNALVDMFCKCGCLDKARAIFDSMRDKNVKCWTSMVSGYVSNGRTDEARELF 220
Query: 233 ------------------------EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
++AL LF MQ ++P+ +LT C TG ++
Sbjct: 221 ERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTARIRPDNFVLVSLLTGCAQTGALE 280
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
+G+ I E ++ +VD++ K G +E A V M+ E + W S +
Sbjct: 281 QGKWIHGYIRENRVTVDKVVGTA-LVDMYAKCGCIETALGVFYEMK-ERDTASWTSLI 336
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 135/271 (49%), Gaps = 12/271 (4%)
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
M+ + + ++ L LF E+ +GL PD T+ VL L V + G+ HG+ V
Sbjct: 1 MLKSLAESKSFTKVLALFGEL-RGQGLYPDNFTLPVVLKSIGRLRKV--IEGEKVHGYAV 57
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
K E + + L+ MYA G ++ VF+ M ER+V+SW LI G EDA+S
Sbjct: 58 KTGLESDSYVCNSLMGMYAALGKMEITHKVFDEMPERDVVSWNGLISSYVGHGRFEDAIS 117
Query: 238 LFEMM-QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
+F+ M + + +K +E T L+AC ++ G + ++ + E+++ R + +VD+
Sbjct: 118 VFQRMSRESNLKADEGTIVSTLSACSVLKNLEIGERIYRYVVTEFEMSVRTGN--ALVDM 175
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
F K G L++A + +MR + NV W S ++ + + D A + +++ P D
Sbjct: 176 FCKCGCLDKARAIFDSMR-DKNVKCWTSMVSGYVSNGRTDEARELFERS-----PVKDVV 229
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVR 387
++T + + Y +++ A + + M +R
Sbjct: 230 LWTAMMNGYVQFNRFDEALELFRCMQTARIR 260
>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 597
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 140/395 (35%), Positives = 218/395 (55%), Gaps = 35/395 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F +M ++ +++ +L +C L + +H + +KLG V +
Sbjct: 214 LGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLT------ 267
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
N +I Y K GNV AR F+ M ++N+ SW+AMIA
Sbjct: 268 ------------------------NALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIA 303
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
AY A +KLFR M + E + D +T+ +V+S C+ LG+ L G+ H + +
Sbjct: 304 AYEQNNAGANAVKLFRRMQA-EKVDFDYITMVSVISACASLGA--LNTGRWMHELVKRKG 360
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
E+N I L+DMYAKCG + A VFE + R+V+SWT++I A G+ EDAL LF
Sbjct: 361 LEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFS 420
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ GVKPN TF V TAC H+GLV+EGRK+F+ + +Y + P ++H CMVDL G+A
Sbjct: 421 RMKDEGVKPNSFTFAAVFTACRHSGLVEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRA 480
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G L EAYE I M +EP+V +WG+ L +C+ H ++AE ++ + L ++ P+ + L
Sbjct: 481 GSLMEAYEFIDKMPVEPDVSVWGALLGSCRIHSNLELAE-LVAEKLFLLDPQTV-TFYVL 538
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y +WE A R+RKLM + ++K G S++
Sbjct: 539 MSNIYAEAGRWEDAARLRKLMEERELKKIPGHSLV 573
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 99/357 (27%), Positives = 171/357 (47%), Gaps = 42/357 (11%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+S MH + D+++ +++SC + L +H +I+K GF S V+V +SL
Sbjct: 113 LALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSL--- 169
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ YS+SG F M +RN+ SW+A+IA
Sbjct: 170 ---------------------------VAMYSQSGETLGMELVFGEMVVRNIVSWTAVIA 202
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y+ + GL +FREM+ + G P+ +T+ +VL C+ L + L GK HG+ +K
Sbjct: 203 GYVQNRYFKEGLGVFREMVGS-GTQPNAVTLVSVLPACAGLEFLNL--GKLIHGYGIKLG 259
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ + + L+ +Y KCG ++ A +F+ M +N++SW A+I +A+ LF
Sbjct: 260 VDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFR 319
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
MQA V + +T V++AC G ++ GR +++ + LE + ++D++ K
Sbjct: 320 RMQAEKVDFDYITMVSVISACASLGALNTGRWMHELVKRK-GLEINVSITNALIDMYAKC 378
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM----VKPEN 353
G ++ A EV + +V+ W S + AC H E +K RM VKP +
Sbjct: 379 GNIDLAREVFERLPCR-SVVSWTSMIGACASHGH---GEDALKLFSRMKDEGVKPNS 431
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/355 (26%), Positives = 165/355 (46%), Gaps = 46/355 (12%)
Query: 9 RQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY--VVTSF 66
R + S SF+ ++L C+ +L+ IH L ++ G ++ ++T L+ + +
Sbjct: 24 RTNYHSRSFN--YLLNCCSSLPDLSRIHAL---VVTNGCGQNLLLSTKLIITACCLAPTM 78
Query: 67 GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAG 126
+ARK+FD++P+R+ WNT+I+GY+ +G EA + M
Sbjct: 79 DYARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNM------------------- 119
Query: 127 AYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ 186
GL PD T V+ C+ L + L GK H IVK+ ++ +
Sbjct: 120 -------------HGAGLFPDNYTFPFVVRSCAVLSA--LREGKEVHCNIVKHGFDSDVF 164
Query: 187 IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
+ + LV MY++ G +VF M RN++SWTA+I G Y ++ L +F M +G
Sbjct: 165 VQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSG 224
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
+PN +T VL AC ++ G K + ++P + ++ L+GK G +E A
Sbjct: 225 TQPNAVTLVSVLPACAGLEFLNLG-KLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETA 283
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
+ M ++ N++ W + +AA ++Q + +K RM + D T++
Sbjct: 284 RSLFDGMVVQ-NLVSWNAMIAA---YEQNNAGANAVKLFRRMQAEKVDFDYITMV 334
>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
Length = 655
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 124/328 (37%), Positives = 200/328 (60%), Gaps = 6/328 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A+++FD +P ++ +W +M+ Y+K G++ A F+ +P RN SWS M+AAY A
Sbjct: 287 AKEIFDGMPIKDVYSWTSMVSAYAKCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQANLP 346
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH-GFIVKNEWELNEQI 187
+ +++F +MI+ G+ P T+ +VLS C+ LG L +G+ + +IV ++ EL +
Sbjct: 347 EEAMRIFNDMIA-AGVEPIDATLVSVLSACAQLGC--LDVGRCLYDAYIVSHKVELTVNL 403
Query: 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
+ +DM+AKCG + A +F ME++NV+SW +I A G SE+AL LF+ +A G+
Sbjct: 404 SNAFIDMFAKCGDVGAASRLFRNMEDKNVVSWNTMIVAHALHGQSEEALHLFQKFKAIGI 463
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
P+E+T+ GVL+AC H+GLV EGR +FK + Y +EPR +HY CM+DL GK G LEEA+
Sbjct: 464 FPDEITYIGVLSACSHSGLVSEGRYHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLEEAF 523
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM 367
EV R+M + + WG+ L AC+ H ++ + L + P +D G++ L+ +Y
Sbjct: 524 EVARSMPVGADEAGWGALLNACRMHGNVEIG-KCAADKLVGLDP-SDSGIYVLMSQIYAS 581
Query: 368 NEKWEGAERVRKLMLNQNVRKARGSSVI 395
KW + +R +M ++ V+K G S I
Sbjct: 582 KSKWGQVKMIRTVMRDRGVKKNPGCSSI 609
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/371 (25%), Positives = 166/371 (44%), Gaps = 69/371 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISH-VYVATSLLH 59
+ LF ++ R +P+D+ +I+ +K+ T + + +H K GFI V V +L+H
Sbjct: 117 LALFRRVLRDRLPADARTIVFAVKAAT--TSSSPAEAIHCVAFKRGFIGQSVLVGNALVH 174
Query: 60 EYVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y + S ARKLFDE+ +R+ V+W T++ GY++ G +P
Sbjct: 175 MYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGG-----------LP---------- 213
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
D ++F M+ G P+++T+ A S +G +GL G+ H +V+
Sbjct: 214 ----------DEAWRVFCRMVVAGGGWPNEVTLVAAASAAGQIGLLGL--GRMVHQCVVE 261
Query: 179 NEWELNEQIATILVDM-------------------------------YAKCGFLKYALMV 207
+ ++ + LVDM YAKCG L+ A +
Sbjct: 262 SGVRMSVNLENALVDMFGKCGCVASAKEIFDGMPIKDVYSWTSMVSAYAKCGDLENAGKL 321
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
F+ + RN +SW+ ++ + E+A+ +F M A GV+P + T VL+AC G +
Sbjct: 322 FKEIPNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDATLVSVLSACAQLGCL 381
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
D GR + + +E + +D+F K G + A + R M + NV+ W + +
Sbjct: 382 DVGRCLYDAYIVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNME-DKNVVSWNTMIV 440
Query: 328 ACKEHKQFDMA 338
A H Q + A
Sbjct: 441 AHALHGQSEEA 451
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 92/234 (39%), Gaps = 52/234 (22%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
M++F+ M V +++ +L +C L V L+ + +SH T L
Sbjct: 350 MRIFNDMIAAGVEPIDATLVSVLSACAQLGCLDVGRCLYDAYI----VSHKVELTVNLSN 405
Query: 61 YVVTSF------GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVAS 114
+ F G A +LF + ++N V+WNTMI ++ G EA F++
Sbjct: 406 AFIDMFAKCGDVGAASRLFRNMEDKNVVSWNTMIVAHALHGQSEEALHLFQK-------- 457
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
F+ + G+ PD++T VLS CSH G L+ + +
Sbjct: 458 --------------------FKAI----GIFPDEITYIGVLSACSHSG----LVSEGRYH 489
Query: 175 F----IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALI 223
F IV E A ++D+ K G L+ A V M + W AL+
Sbjct: 490 FKEMKIVYGIEPRAEHYAC-MIDLLGKVGLLEEAFEVARSMPVGADEAGWGALL 542
>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 646
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 139/409 (33%), Positives = 225/409 (55%), Gaps = 20/409 (4%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+ M + V + F+ +LK+C + +H LK GF +V ++L+ YV
Sbjct: 115 FYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYV 174
Query: 63 VTSF-GFARKLF-DELPERNAVT-------------WNTMIKGYSKSGNVCEARDFFERM 107
+ F AR LF + E++ V WN MI GY + G+ AR F++M
Sbjct: 175 MCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKM 234
Query: 108 PLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL 167
R+V SW+ MI+ Y G + +++FREM + + P+ +T+ +VL S LGS L
Sbjct: 235 RQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGD-IRPNYVTLVSVLPAISRLGS--LE 291
Query: 168 MGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSA 227
+G+ H + + +++ + + L+DMY+KCG ++ A+ VFE + NVI+W+A+I G A
Sbjct: 292 LGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFA 351
Query: 228 HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRI 287
G + DA+ F M+ GV+P+++ + +LTAC H GLV+EGR+YF + LEPRI
Sbjct: 352 IHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRI 411
Query: 288 QHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALR 347
+HYGCMVDL G++G L+EA E I M ++P+ +IW + L AC+ +M +RV +
Sbjct: 412 EHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMD 471
Query: 348 MVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
MV +D G + + ++Y W +R M +++RK G S+I
Sbjct: 472 MVP--HDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLID 518
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 143/328 (43%), Gaps = 81/328 (24%)
Query: 52 YVATSLLHEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRN 111
+ ATS LH +A K+F+++P+RN +WNT+I+G+S+S
Sbjct: 64 FCATSDLHH---RDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDED-------------- 106
Query: 112 VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKS 171
A+IA + LF EM+S+E + P++ T +VL C+ G + GK
Sbjct: 107 ----KALIA-----------ITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQ--EGKQ 149
Query: 172 AHGFIVKNEWELNEQIATILVDMYAKCGFL------------------------------ 201
HG +K + +E + + LV MY CGF+
Sbjct: 150 IHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIV 209
Query: 202 ---------------KYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
K A M+F+ M +R+V+SW +I G + G+ +DA+ +F M+
Sbjct: 210 LWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGD 269
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
++PN +T VL A G ++ G ++ + E+ + ++D++ K G +E+A
Sbjct: 270 IRPNYVTLVSVLPAISRLGSLELG-EWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKA 328
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
V + E NVI W + + H Q
Sbjct: 329 IHVFERLPRE-NVITWSAMINGFAIHGQ 355
>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Brachypodium distachyon]
Length = 802
Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 136/396 (34%), Positives = 227/396 (57%), Gaps = 10/396 (2%)
Query: 3 LFSQM-HRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
FS+M ++ D F+I +L +C + +++ +H++IL+ V +L+ Y
Sbjct: 281 FFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMY 340
Query: 62 VVT-SFGFARKLFDE--LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
+ S AR + + + + N +++ +++GY K G++ AR+ F+ M R+V +W+AM
Sbjct: 341 AKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAM 400
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I Y G D ++LFR MI + G P+ T+ AVLS C+ L L GK H ++
Sbjct: 401 IVGYEQNGHNDEAMELFRLMIRS-GPEPNSYTVAAVLSVCASLAC--LEYGKQIHCKAIR 457
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERN-VISWTALICGSAHRGYSEDALS 237
+ E + ++ +V MYA+ G L +A VF+ + R ++WT++I A G EDA+
Sbjct: 458 SLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVG 517
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LFE M GVKP+ +TF GVL+AC H G VDEG++YF+ + +++ + P + HY CMVDL
Sbjct: 518 LFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLL 577
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
+AG EA E I+ M +EP+ I WGS L+AC+ HK D+AE + + L + P N G
Sbjct: 578 ARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAE-LAAEKLLSIDPGNSGA- 635
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
++ + ++Y+ +W A ++ K +++V+K G S
Sbjct: 636 YSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFS 671
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 109/388 (28%), Positives = 187/388 (48%), Gaps = 40/388 (10%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+++F M + F++ ++L SC V +HS ++KLG S V VA S+L+
Sbjct: 147 IKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNM 206
Query: 61 Y-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y AR +F+ +PER+ +WN M+ + G + A FE MP R + SW+A+I
Sbjct: 207 YGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVI 266
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A Y G L F M+S + PD+ TI +VLS C++LG V + GK H +I+++
Sbjct: 267 AGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSI--GKQVHAYILRS 324
Query: 180 EWELNEQIATILVDMYAKCGF---------------------------------LKYALM 206
Q+ L+ MYAK G +K+A
Sbjct: 325 RMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHARE 384
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
+F++M R+V++WTA+I G G++++A+ LF +M +G +PN T VL+ C
Sbjct: 385 MFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLAC 444
Query: 267 VDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSF 325
++ G++ + K I + + + +V ++ ++G L A V + + W S
Sbjct: 445 LEYGKQIHCKAIRSLQEQSSSVSN--SIVTMYARSGSLPWARRVFDRVHWRKETVTWTSM 502
Query: 326 LAACKEHKQFDMAERVIKQALRM-VKPE 352
+ A +H + A + ++ LR+ VKP+
Sbjct: 503 IVALAQHGLGEDAVGLFEEMLRVGVKPD 530
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/361 (30%), Positives = 178/361 (49%), Gaps = 53/361 (14%)
Query: 11 SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS----- 65
+ SDS +L+ C N +H+ +K G ++ Y+ +LL Y +
Sbjct: 18 AAASDSDHCARLLQRCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGG 77
Query: 66 -FGFARKLFDELP--ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
F AR+LFDE+P +RN TWN+++ Y+KSG + +AR F MP R+ SW+ M+
Sbjct: 78 GFREARRLFDEIPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGL 137
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
G + +K+F +M++ +GL+P Q T+ VLS C+ + G+ G+ H F+VK
Sbjct: 138 NRVGRFGEAIKMFLDMVT-DGLSPTQFTLTNVLSSCAATEARGV--GRKVHSFVVKLGLS 194
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE-- 240
+A +++MY KCG + A VFE M ER+V SW A++ AH G + ALSLFE
Sbjct: 195 SCVPVANSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENM 254
Query: 241 ------------------------------MMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
M+ + + P+E T T VL+AC + G+V G
Sbjct: 255 PDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIG 314
Query: 271 RKYFKMIDEEYDLEPRIQHYG----CMVDLFGKAGFLEEAYEVIRTMRL-EPNVIIWGSF 325
++ Y L R+ + G ++ ++ K+G +E A V++ + + NVI + +
Sbjct: 315 KQV-----HAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTAL 369
Query: 326 L 326
L
Sbjct: 370 L 370
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 2/148 (1%)
Query: 191 LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250
L+ +YAK G L A VF M ER+ +SWT ++ G G +A+ +F M G+ P
Sbjct: 102 LLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLSPT 161
Query: 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI 310
+ T T VL++C T GRK + + L + +++++GK G E A V
Sbjct: 162 QFTLTNVLSSCAATEARGVGRKVHSFV-VKLGLSSCVPVANSVLNMYGKCGDAETARAVF 220
Query: 311 RTMRLEPNVIIWGSFLAACKEHKQFDMA 338
M E +V W + ++ + D+A
Sbjct: 221 ERMP-ERSVSSWNAMVSLDAHLGRMDLA 247
>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 750
Score = 251 bits (640), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 120/327 (36%), Positives = 194/327 (59%), Gaps = 5/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
R+LF+E+P N +WN MI GY ++G++ +AR+ F+ MP R+ SW+A+IA Y G Y
Sbjct: 300 GRELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLY 359
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ + + EM +G + ++ T LS C+ + + L +GK HG +V+ +E +
Sbjct: 360 EEAMNMLVEM-KRDGESLNRSTFCCALSACADIAA--LELGKQVHGQVVRTGYEKGCLVG 416
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
LV MY KCG + A VF+ ++ ++++SW ++ G A G+ AL++FE M GVK
Sbjct: 417 NALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVK 476
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+E+T GVL+AC HTGL D G +YF ++++Y + P +HY CM+DL G+AG LEEA
Sbjct: 477 PDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQN 536
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+IR M EP+ WG+ L A + H ++ E+ + +M +P N G++ L+ +LY +
Sbjct: 537 LIRNMPFEPDAATWGALLGASRIHGNMELGEQAAEMVFKM-EPHN-SGMYVLLSNLYAAS 594
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
+W ++R M V+K G S +
Sbjct: 595 GRWVDVSKMRLKMRQIGVQKTPGYSWV 621
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 147/280 (52%), Gaps = 39/280 (13%)
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
G AR+LFD++P R+ ++WNTMI GY++ G++ +AR FE P+R+V +W+AM+ AY+
Sbjct: 204 LGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQD 263
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
G D ++F EM +M+ +++G + + MG+ EL E
Sbjct: 264 GMLDEARRVFDEMPQKR-----EMSYNVMIAGYAQYKRMD--MGR-----------ELFE 305
Query: 186 QIA-------TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
++ I++ Y + G L A +F++M +R+ +SW A+I G A G E+A+++
Sbjct: 306 EMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNM 365
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGC----- 292
M+ G N TF L+AC ++ G++ + +++ Y+ GC
Sbjct: 366 LVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYE-------KGCLVGNA 418
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
+V ++ K G ++EAY+V + ++ +++ W + LA H
Sbjct: 419 LVGMYCKCGCIDEAYDVFQGVQ-HKDIVSWNTMLAGYARH 457
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 141/311 (45%), Gaps = 26/311 (8%)
Query: 64 TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL 123
F AR LFD++P ++ +WN M+ GY+++ + +AR F+ MP ++V SW+AM++ Y+
Sbjct: 78 AKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYV 137
Query: 124 NAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWEL 183
+G D +F M ++ + + V SG + ++ F K++WEL
Sbjct: 138 RSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSG---------RLEEARRLFESKSDWEL 188
Query: 184 NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQ 243
L+ Y K L A +F+ + R++ISW +I G A G A LFE
Sbjct: 189 IS--CNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESP 246
Query: 244 ATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFL 303
V T+T ++ A V G++DE R+ F + ++ ++ Y M+ + + +
Sbjct: 247 VRDV----FTWTAMVYAYVQDGMLDEARRVFDEMPQKREMS-----YNVMIAGYAQYKRM 297
Query: 304 EEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICD 363
+ E+ M PN+ W ++ ++ A + + P+ D + I
Sbjct: 298 DMGRELFEEMPF-PNIGSWNIMISGYCQNGDLAQARNLFD-----MMPQRDSVSWAAIIA 351
Query: 364 LYTMNEKWEGA 374
Y N +E A
Sbjct: 352 GYAQNGLYEEA 362
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 123/290 (42%), Gaps = 57/290 (19%)
Query: 88 IKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD 147
I + ++G+ A F+ MPLRN S++AMI+ YL + LF +M + + +
Sbjct: 40 ISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSWN 99
Query: 148 QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMV 207
M G YA+ L+ A M+
Sbjct: 100 LMLTG------------------------------------------YARNRRLRDARML 117
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
F+ M E++V+SW A++ G G+ ++A +F+ M N +++ G+L A V +G +
Sbjct: 118 FDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMP----HKNSISWNGLLAAYVRSGRL 173
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
+E R+ F + + D E + C++ + K L +A ++ + + ++I W + ++
Sbjct: 174 EEARRLF---ESKSDWE--LISCNCLMGGYVKRNMLGDARQLFDQIPVR-DLISWNTMIS 227
Query: 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERV 377
+ A R+ +++ P D +T + Y + + A RV
Sbjct: 228 GYAQDGDLSQARRLFEES-----PVRDVFTWTAMVYAYVQDGMLDEARRV 272
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 96/247 (38%), Gaps = 41/247 (16%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
M + +M R + + L +C L + +H +++ G+ V +L+
Sbjct: 363 MNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGM 422
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A +F + ++ V+WNTM+ GY++ G F R
Sbjct: 423 YCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHG--------FGRQ------------ 462
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
L +F MI+ G+ PD++T+ VLS CSH G L + F N
Sbjct: 463 -----------ALTVFESMIT-AGVKPDEITMVGVLSACSHTG----LTDRGTEYFHSMN 506
Query: 180 E---WELNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSEDA 235
+ N + ++D+ + G L+ A + M E + +W AL+ S G E
Sbjct: 507 KDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELG 566
Query: 236 LSLFEMM 242
EM+
Sbjct: 567 EQAAEMV 573
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 14/157 (8%)
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
T + + + G AL VF+ M RN +S+ A+I G A LF+ M
Sbjct: 37 TKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKM------ 90
Query: 249 PNEMTFTG--VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
P++ F+ +LT + + R F + E+ + + M+ + ++G ++EA
Sbjct: 91 PHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEK-----DVVSWNAMLSGYVRSGHVDEA 145
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIK 343
+V M N I W LAA + + A R+ +
Sbjct: 146 RDVFDRMP-HKNSISWNGLLAAYVRSGRLEEARRLFE 181
>gi|297827165|ref|XP_002881465.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327304|gb|EFH57724.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 507
Score = 251 bits (640), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 141/397 (35%), Positives = 223/397 (56%), Gaps = 41/397 (10%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
++S+M R+ + + + +LK+C F LT + +LK GF S VYV +L+H Y
Sbjct: 100 VYSEMKRRRIKPNKLTFPFLLKACASFLGLTAGRQIQVEVLKHGFDSDVYVGNNLIHLY- 158
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
G +K D AR F+ M RNV SW++++ A
Sbjct: 159 ----GSCKKTSD-------------------------ARKVFDEMTERNVVSWNSIMTAL 189
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+ G ++ ++ F EMI + PD+ T+ +LS C L +GK H ++ E E
Sbjct: 190 VENGKFNLVVECFFEMIGRQ-FCPDETTMVVLLSACGG----NLSLGKLVHSQVMVRELE 244
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF-EM 241
LN ++ T LVDMYAK G LKYA +VFE M ++NV +W+A+I G A G++E+AL LF +M
Sbjct: 245 LNCRLGTALVDMYAKSGGLKYARLVFERMADKNVWTWSAMIVGLAQYGFAEEALQLFSKM 304
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M+ + V+PN +TF GVL AC HTGLVD+G KYF +++ + ++P + HYG MVD+ G+AG
Sbjct: 305 MKESSVRPNYVTFLGVLCACSHTGLVDDGYKYFHEMEKRHKIKPMMIHYGAMVDILGRAG 364
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFD---MAERVIKQALRMVKPENDGGVF 358
L EAY+ I+ M EP+ ++W + L+AC H D + E+V K+ + + +P+ G +
Sbjct: 365 RLNEAYDFIQKMPFEPDAVVWRTLLSACSIHHDEDDKGIGEKVKKRLIEL-EPKRSGNL- 422
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++ + + W+ A VR++M ++K G S +
Sbjct: 423 VIVANRFAEARMWDEAAEVRRVMKETKMKKIAGESCL 459
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 138/344 (40%), Gaps = 49/344 (14%)
Query: 11 SVPSDSFSILHILKSCTHFNNLTVIH---HLHSHILKLGFISHVYVATSLLHEYVVTSFG 67
S S L LK C+ +L IH H+ S IS + +SL H
Sbjct: 8 SFKSKKHQCLIFLKLCSSIKHLLQIHGQIHVSSLQNDSFIISELIRVSSLSH---TKDLA 64
Query: 68 FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
FAR L + TWN + +GYS S E+ + M R +
Sbjct: 65 FARTLLLHSSDSTPSTWNMLTRGYSSSDTPVESIWVYSEMKRRRIK-------------- 110
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
P+++T +L C+ +GL G+ ++K+ ++ + +
Sbjct: 111 ------------------PNKLTFPFLLKACASF--LGLTAGRQIQVEVLKHGFDSDVYV 150
Query: 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
L+ +Y C A VF+ M ERNV+SW +++ G + F M
Sbjct: 151 GNNLIHLYGSCKKTSDARKVFDEMTERNVVSWNSIMTALVENGKFNLVVECFFEMIGRQF 210
Query: 248 KPNEMTFTGVLTACVHTGLVDEGR-KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
P+E T +L+AC G + G+ + +++ E +L R+ +VD++ K+G L+ A
Sbjct: 211 CPDETTMVVLLSAC--GGNLSLGKLVHSQVMVRELELNCRLG--TALVDMYAKSGGLKYA 266
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVK 350
V M + NV W + + Q+ AE ++ +M+K
Sbjct: 267 RLVFERM-ADKNVWTWSAMIVGL---AQYGFAEEALQLFSKMMK 306
>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 760
Score = 251 bits (640), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 135/399 (33%), Positives = 229/399 (57%), Gaps = 12/399 (3%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+F +MH D ++ +L S NL + +H +++K G + V +++L Y
Sbjct: 239 MFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYG 298
Query: 63 VTSFGFAR-KLFDELPERNAVTWNTMIKGYSKSGNVCEARDFF-----ERMPLRNVASWS 116
+ + KLFDE N I G S++G V +A + F ++M L NV SW+
Sbjct: 299 KSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMEL-NVVSWT 357
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
++IA G L+LFREM G+ P+++TI ++L C ++ ++G G+S HGF
Sbjct: 358 SIIAGCAQNGKDIEALELFREM-QVAGVKPNRVTIPSMLPACGNIAALG--HGRSTHGFA 414
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
V+ + + + L+DMYAKCG +K + +VF +M +N++ W +L+ G + G +++ +
Sbjct: 415 VRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVM 474
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
S+FE + T +KP+ ++FT +L+AC GL DEG KYF M+ EEY ++PR++HY CMV+L
Sbjct: 475 SIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNL 534
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
G+AG L+EAY++I+ + EP+ +WG+ L +C+ D+AE + Q L ++PEN G
Sbjct: 535 LGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVDLAE-IAAQKLFHLEPENP-G 592
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ ++Y W + +R M + ++K G S I
Sbjct: 593 TYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWI 631
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/392 (24%), Positives = 177/392 (45%), Gaps = 48/392 (12%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+FS+M + D+ + ++ K C + +H G +V SL H Y+
Sbjct: 103 VFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSLFHMYM 162
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR----NVASWSA 117
G ARK+FD + E++ VT + ++ GY++ G + E M N+ SW+
Sbjct: 163 RCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNG 222
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
+++ + +G + + +F++M + G PDQ+T+ +VL S L MG+ HG+++
Sbjct: 223 ILSGFNRSGYHKEAVIMFQKM-HHLGFCPDQVTVSSVLPSVGD--SENLNMGRQIHGYVI 279
Query: 178 KNEWELNEQIATILVDMYAKC-------------------------------GFLKYALM 206
K ++ + + ++DMY K G + AL
Sbjct: 280 KQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALE 339
Query: 207 VFELMEER----NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACV 262
+F L +E+ NV+SWT++I G A G +AL LF MQ GVKPN +T +L AC
Sbjct: 340 MFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACG 399
Query: 263 HTGLVDEGRKYFKMIDEEYDLEPRIQHYG-CMVDLFGKAGFLEEAYEVIRTMRLEPNVII 321
+ + GR + L+ H G ++D++ K G ++ + +++ M N++
Sbjct: 400 NIAALGHGRSTHGFAVRVHLLDD--VHVGSALIDMYAKCGRIKMS-QIVFNMMPTKNLVC 456
Query: 322 WGSFLAACKEHKQFDMAERVIKQALRM-VKPE 352
W S + H + + + +R +KP+
Sbjct: 457 WNSLMNGYSMHGKAKEVMSIFESLMRTRLKPD 488
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 94/189 (49%), Gaps = 3/189 (1%)
Query: 87 MIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
+I YS +A + +P V S+S++I A A + + +F M S+ GL P
Sbjct: 56 LIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAKLFSQSIGVFSRMFSH-GLIP 114
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
D + + C+ L + GK H + +++ + L MY +CG + A
Sbjct: 115 DTHVLPNLFKVCAELSA--FKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARK 172
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
VF+ M E++V++ +AL+CG A +G E+ + + M+ +G++PN +++ G+L+ +G
Sbjct: 173 VFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGY 232
Query: 267 VDEGRKYFK 275
E F+
Sbjct: 233 HKEAVIMFQ 241
>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Vitis vinifera]
Length = 610
Score = 250 bits (639), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 129/397 (32%), Positives = 220/397 (55%), Gaps = 6/397 (1%)
Query: 1 MQLFSQMHRQS-VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+ +F M +Q + D + ++K+C + +H+ + V +SL+
Sbjct: 89 LSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVVKSSLVD 148
Query: 60 EYVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y R +FD + +N+++W MI GY++SG +A F++MP++N+ SW+A+
Sbjct: 149 MYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNLLSWTAL 208
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I+ + +G + LF EM S D + +++ ++L +GL GK H ++
Sbjct: 209 ISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGL--GKQIHCLVIL 266
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+E + ++ LVDMYAKC + A +F M +R+++SWT++I G+A G +E+ALSL
Sbjct: 267 LGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSL 326
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
+ M +TG+KPNE+TF G++ AC H GLV +GR +F + ++Y + P +QHY C++DL
Sbjct: 327 YNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLS 386
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
++G LEEA +I+ M +P+ W + L+AC H+ + RV L + KPE D +
Sbjct: 387 RSGHLEEAENLIKAMPFKPDEATWAALLSACNHHRNTLIGIRVADHLLSL-KPE-DPSTY 444
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y WE +VR+LM V+K G S I
Sbjct: 445 ILLSNIYASAAMWESVSKVRRLMAAMEVKKEPGYSCI 481
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 102/200 (51%), Gaps = 7/200 (3%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
N +I Y K G + +A + F ++P R+ SW++++ A A L +F M +GL
Sbjct: 42 NNLINMYGKCGLIQDALNLFNQLPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGL 101
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
PD ++ C+ LG++ GK H + + ++ + + LVDMYAKCG
Sbjct: 102 QPDHYVFACLVKACAILGAMK--QGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIG 159
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
+VF+ + +N ISWTA+I G A G DA+ LF+ M N +++T +++ V +
Sbjct: 160 RVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVK----NLLSWTALISGLVQS 215
Query: 265 G-LVDEGRKYFKMIDEEYDL 283
G VD + +M + D+
Sbjct: 216 GNWVDSFYLFMEMRSKGIDI 235
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 77/165 (46%), Gaps = 9/165 (5%)
Query: 168 MGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSA 227
+GK H I+K + + ++ L++MY KCG ++ AL +F + R+ ISW +++ +
Sbjct: 21 IGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHRDPISWASILTANN 80
Query: 228 HRGYSEDALSLFE-MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR 286
LS+F M + G++P+ F ++ AC G + +G K + + + P
Sbjct: 81 QANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQG----KQVHATFIVSPV 136
Query: 287 IQH---YGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
+VD++ K G + V ++ N I W + ++
Sbjct: 137 SDDDVVKSSLVDMYAKCGLPDIGRVVFDSIS-SKNSISWTAMISG 180
>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 678
Score = 250 bits (639), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 133/429 (31%), Positives = 228/429 (53%), Gaps = 43/429 (10%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY- 61
+F M + D ++ +LK+ + +L V +H+ ++++G +V+V L+ Y
Sbjct: 124 VFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYG 183
Query: 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSG-------------------------- 95
A ++ D++P R+ V+WN+++ G +++G
Sbjct: 184 KCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMAS 243
Query: 96 -----------NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
NV ++ F ++ +++ SW+ MIA Y+N + +F +M + +
Sbjct: 244 LLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQM-EDHAV 302
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
PD ++I +VL C L + LL+G+ H ++V+ + N + L+DMYAKCG L+YA
Sbjct: 303 DPDAISIASVLPACGDLSA--LLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYA 360
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
VF+ M+ R+V+SWT++I G DA+SLF MQ G+ P+ + F VL+AC H
Sbjct: 361 REVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHA 420
Query: 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324
GL+DEGR YFK++ EE + PRI+H+ CMVDL G+AG ++EAY I+ M +EPN +WG+
Sbjct: 421 GLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGA 480
Query: 325 FLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384
L+AC+ + + Q ++ PE G + L+ ++Y +WE VR +M +
Sbjct: 481 LLSACRVYSNMIIGLLAADQLFQLC-PEQ-SGYYVLLSNIYAKAGRWEDVTTVRSIMKTK 538
Query: 385 NVRKARGSS 393
++K G S
Sbjct: 539 GIKKMPGVS 547
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 127/267 (47%), Gaps = 15/267 (5%)
Query: 87 MIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
+++ Y+ G R F+ +P +NV ++ MI +Y+N Y L +F+ M + G+ P
Sbjct: 77 LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNM-AGHGIDP 135
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
D T VL S GS L +G H +V+ +LN + L+ MY KCG L A
Sbjct: 136 DHYTYPCVLKASS--GSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACR 193
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
V + M R+V+SW +L+ G A G +DAL + + M+ G+KP+ T +L A +T L
Sbjct: 194 VLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCL 253
Query: 267 VDEG---RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR---LEPNVI 320
+ + K+ ++ + + M+ ++ EA ++ M ++P+ I
Sbjct: 254 DNVSFVKEMFMKLANKS------LVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAI 307
Query: 321 IWGSFLAACKEHKQFDMAERVIKQALR 347
S L AC + + R+ + +R
Sbjct: 308 SIASVLPACGDLSALLLGRRIHEYVVR 334
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 134/295 (45%), Gaps = 20/295 (6%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F QM +V D+ SI +L +C + L + +H ++++ ++ + +L+
Sbjct: 291 VDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDM 350
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL----RNVASW 115
Y +AR++FD++ R+ V+W +MI Y +G +A F RM + ++
Sbjct: 351 YAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAF 410
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
++++A +AG D G F+ M + P I + LG G + A+GF
Sbjct: 411 VSVLSACSHAGLLDEGRYYFKLMTEECKIVP---RIEHFVCMVDLLGRAGQV--DEAYGF 465
Query: 176 IVKNEWELNEQIATILVD---MYAK--CGFLKYALMVFELMEERNVISWTALICG-SAHR 229
I + E NE++ L+ +Y+ G L A +F+L E++ + L+ A
Sbjct: 466 IKQMPMEPNERVWGALLSACRVYSNMIIGLLA-ADQLFQLCPEQS--GYYVLLSNIYAKA 522
Query: 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV-DEGRKYFKMIDEEYDL 283
G ED ++ +M+ G+K L VHT L D+ K I EE D+
Sbjct: 523 GRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDV 577
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 25/188 (13%)
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
+ ++ N + L+ YA CG +F+ + ++NV+ + +I + DAL
Sbjct: 63 IDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDAL 122
Query: 237 SLFEMMQATGVKPNEMTFTGVLTAC-----------VHTGLVDEGRKYFKMIDEEYDLEP 285
+F+ M G+ P+ T+ VL A +H +V G L+
Sbjct: 123 LVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVG------------LDL 170
Query: 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ- 344
+ ++ ++GK G L EA V+ M +V+ W S +A C + QFD A V K+
Sbjct: 171 NVFVGNGLISMYGKCGCLVEACRVLDQMPCR-DVVSWNSLVAGCARNGQFDDALEVCKEM 229
Query: 345 ALRMVKPE 352
L +KP+
Sbjct: 230 ELLGLKPD 237
>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
Length = 771
Score = 250 bits (639), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 141/394 (35%), Positives = 219/394 (55%), Gaps = 35/394 (8%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+LF +M +++ + ++L ++ C L + LH++IL+ GF + +AT+L
Sbjct: 284 KLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATAL---- 339
Query: 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+ Y K ++ AR F+ R+V W+AM++A
Sbjct: 340 --------------------------VDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSA 373
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y A D LF +M ++ G+ P ++TI ++LS C+ G++ L GK H +I K
Sbjct: 374 YAQANCIDQAFNLFDQMRTS-GVRPTKVTIVSLLSLCAVAGALDL--GKWVHSYIDKERV 430
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
E++ + T LVDMYAKCG + A +F R++ W A+I G A GY E+AL +F
Sbjct: 431 EVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAE 490
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M+ GVKPN++TF G+L AC H GLV EG+K F+ + + L P+I+HYGCMVDL G+AG
Sbjct: 491 MERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAG 550
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L+EA+E+I++M ++PN I+WG+ +AAC+ HK + E Q L ++PEN G L+
Sbjct: 551 LLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLE-IEPEN-CGYNVLM 608
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y +W A VRK M ++K G SVI
Sbjct: 609 SNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVI 642
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 153/334 (45%), Gaps = 43/334 (12%)
Query: 16 SFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFD 74
+F +LK+C + + +H +LK G V+V +L+ Y +AR +FD
Sbjct: 94 NFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFD 153
Query: 75 ELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKL 134
++ ER+ V+W+TMI+ S++ +D L+L
Sbjct: 154 KMMERDVVSWSTMIRSLSRNKE-------------------------------FDMALEL 182
Query: 135 FREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA----TI 190
REM + + P ++ + ++++ + + + MGK+ H ++++N NE + T
Sbjct: 183 IREMNFMQ-VRPSEVAMVSMVNLFAD--TANMRMGKAMHAYVIRN--SNNEHMGVPTTTA 237
Query: 191 LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250
L+DMYAKCG L A +F + ++ V+SWTA+I G E+ LF MQ + PN
Sbjct: 238 LLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPN 297
Query: 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI 310
E+T ++ C TG + G++ I + +VD++GK + A +
Sbjct: 298 EITMLSLIVECGFTGALQLGKQLHAYILRN-GFSVSLALATALVDMYGKCSDIRNARALF 356
Query: 311 RTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
+ + +V+IW + L+A + D A + Q
Sbjct: 357 DSTQ-NRDVMIWTAMLSAYAQANCIDQAFNLFDQ 389
>gi|449486568|ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Cucumis sativus]
Length = 532
Score = 250 bits (639), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 138/400 (34%), Positives = 223/400 (55%), Gaps = 11/400 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +FS + R + D++++ ++LK+ N+ + +H+ +KLG + +V SLL
Sbjct: 90 IAVFSAIFRNGIHPDTYTLPYVLKASARMTNIHLGESIHACTIKLGSAVNEFVGNSLLVM 149
Query: 61 Y-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + AR++FDE+PE +AV+W MI GY+ G+V AR+ F+ +++ W AMI
Sbjct: 150 YRSFDNMRSARQVFDEMPELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMI 209
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y+ + GL +FR M E + PD+ I +LS C+H+G+ L G H ++ +
Sbjct: 210 SGYVQNNCFKEGLHMFRLMQLTE-VEPDEAIIVTILSACAHMGA--LDTGIWIHRYLGRL 266
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
L +++T L+DMYAKCG L A +F M +R+ + W A+I G A G E A+ LF
Sbjct: 267 GLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLF 326
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M+ G+KP+ +TF V AC ++G+VDEG + + + + +EP+ +HYGC++DL +
Sbjct: 327 MEMEKAGIKPDNITFIAVWXACSNSGMVDEGIRIWNRMSTVHKIEPKSEHYGCVIDLLSR 386
Query: 300 AGFLEEAYEVI----RTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
G EEA VI +T + W +FL+AC +H Q AE A R+ + E
Sbjct: 387 VGRFEEAEGVIQRLPKTASPSEEAVAWRAFLSACCKHGQTQQAEVA---AERLFQLERHS 443
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G + L+ ++Y K E A+RVR +M + V K G S I
Sbjct: 444 GAYVLLSNMYAALGKHEDAKRVRNMMKLKGVEKVPGCSSI 483
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 93/380 (24%), Positives = 149/380 (39%), Gaps = 80/380 (21%)
Query: 12 VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH---EYVVTSFGF 68
+ S S L +L C + N L H+ +LK G + +V + LL+ E S
Sbjct: 1 MSSSSKRCLLLLHKCINMNQLK---QAHAQVLKSGLHNSNFVLSRLLNFCAESRNGSLSH 57
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A KLF + +NTMIK G +LNA
Sbjct: 58 AFKLFQHIQHPTICIFNTMIKALLLRGE-------------------------FLNA--- 89
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ +F + N G+ PD T+ VL + + ++ L G+S H +K +NE +
Sbjct: 90 ---IAVFSAIFRN-GIHPDTYTLPYVLKASARMTNIHL--GESIHACTIKLGSAVNEFVG 143
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM------- 241
L+ MY ++ A VF+ M E + +SWT +I G A+ G + A LF+M
Sbjct: 144 NSLLVMYRSFDNMRSARQVFDEMPELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTG 203
Query: 242 ------------------------MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI 277
MQ T V+P+E +L+AC H G +D G + +
Sbjct: 204 IWGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYL 263
Query: 278 DEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDM 337
L ++ ++D++ K G L+ A + M NV W + ++
Sbjct: 264 G-RLGLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEMSQRDNV-CWNAMISGMAMDGD--- 318
Query: 338 AERVIKQALRM----VKPEN 353
E IK + M +KP+N
Sbjct: 319 GEGAIKLFMEMEKAGIKPDN 338
>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
Length = 818
Score = 250 bits (639), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 133/399 (33%), Positives = 223/399 (55%), Gaps = 8/399 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L+ ++ + + + IL +C+ L +HSHIL+ G S V VAT+L++
Sbjct: 293 LELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNM 352
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSG---NVCEARDFFERMPLRNVASWS 116
Y S ARK+F+ + R+AV W+T+I Y+ +G + +AR F+R+ R+ SW+
Sbjct: 353 YAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWN 412
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
AMI Y+ G +K+FREM GL PD +T AVL C+ LG + + K+ H I
Sbjct: 413 AMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEV--KALHAQI 470
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
++E E N + L++MYA+CG L+ A +F +E+ V+SWTA++ + G +AL
Sbjct: 471 SESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEAL 530
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
LF+ M GVKP+++T+T +L C H G +++G +YF + E + L P H+ MVDL
Sbjct: 531 DLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADHFAAMVDL 590
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
G++G L +A E++ +M EP+ + W +FL AC+ H + ++ E ++ + +
Sbjct: 591 LGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYEL--DPSSTA 648
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ + ++Y + WE VRK M + ++K G S I
Sbjct: 649 PYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFI 687
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 99/389 (25%), Positives = 178/389 (45%), Gaps = 72/389 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+++F +M + V +S + ++++ + L +H+ I+ GF + + VAT+L
Sbjct: 193 LRIFKEM-KCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATAL--- 248
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
I Y K G+ EAR+ F++M R++ SW+ MI
Sbjct: 249 ---------------------------INMYGKCGSSHEAREVFDKMKKRDMVSWNVMIG 281
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y+ G + L+L++++ EG + T ++L CS + + L G+ H I++
Sbjct: 282 CYVLNGDFHEALELYQKL-DMEGFKRTKATFVSILGACSSVKA--LAQGRLVHSHILERG 338
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED------ 234
+ +AT LV+MYAKCG L+ A VF M+ R+ ++W+ LI A GY +D
Sbjct: 339 LDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARK 398
Query: 235 ----------------------------ALSLF-EMMQATGVKPNEMTFTGVLTACVHTG 265
A+ +F EM A G+KP+ +TF VL AC G
Sbjct: 399 VFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLG 458
Query: 266 LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSF 325
+ E + I E +LE + +++++ + G LEEA + + E V+ W +
Sbjct: 459 RLSEVKALHAQISES-ELESNVVVTNTLINMYARCGSLEEAERLFAAAK-EKTVVSWTAM 516
Query: 326 LAACKEHKQFDMAERVIKQ-ALRMVKPEN 353
+AA ++ ++ A + ++ L VKP++
Sbjct: 517 VAAFSQYGRYAEALDLFQEMDLEGVKPDD 545
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 128/244 (52%), Gaps = 6/244 (2%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
N ++ Y++ G+V +A+ F+ + R+ SW+A+I A+ +G + L++F+EM + +
Sbjct: 146 NALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCD--V 203
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
P+ T V+SG S L G+ H IV N ++ + +AT L++MY KCG A
Sbjct: 204 KPNSTTYINVISGFST--PEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEA 261
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
VF+ M++R+++SW +I G +AL L++ + G K + TF +L AC
Sbjct: 262 REVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSV 321
Query: 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324
+ +GR I E L+ + +V+++ K G LEEA +V M+ + + W +
Sbjct: 322 KALAQGRLVHSHILER-GLDSEVAVATALVNMYAKCGSLEEARKVFNAMK-NRDAVAWST 379
Query: 325 FLAA 328
+ A
Sbjct: 380 LIGA 383
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 153/345 (44%), Gaps = 58/345 (16%)
Query: 7 MHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTS 65
M RQ D+ + L +L SC+ ++ LH I F V +L+ Y S
Sbjct: 1 MDRQP---DNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDS 57
Query: 66 FGFARKLFDELP--ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL 123
AR +F+ + +RN V+WN MI Y+++G+ EA + RM L
Sbjct: 58 LVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNL-------------- 103
Query: 124 NAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWEL 183
+GL D +T +VL CS L G+ H + + +
Sbjct: 104 ------------------QGLGTDHVTFVSVLGACSSLA-----QGREIHNRVFYSGLDS 140
Query: 184 NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQ 243
+ +A LV MYA+ G + A +F+ ++ R+ SW A+I + G AL +F+ M+
Sbjct: 141 FQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMK 200
Query: 244 ATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
VKPN T+ V++ ++ EGRK + +++ +D + + +++++GK G
Sbjct: 201 CD-VKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVAT--ALINMYGKCGS 257
Query: 303 LEEAYEVIRTMRLEPNVIIW----------GSFLAACKEHKQFDM 337
EA EV M+ + +++ W G F A + +++ DM
Sbjct: 258 SHEAREVFDKMK-KRDMVSWNVMIGCYVLNGDFHEALELYQKLDM 301
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 101/212 (47%), Gaps = 13/212 (6%)
Query: 146 PDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYAL 205
PD +T VL CS G V + G++ H I + +E + + L+ MY KC L A
Sbjct: 5 PDNVTFLTVLCSCSSCGDV--VEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDAR 62
Query: 206 MVFELME--ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC-- 261
VFE M+ +RNV+SW A+I A G+S +AL L+ M G+ + +TF VL AC
Sbjct: 63 SVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSS 122
Query: 262 VHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVII 321
+ G R ++ +D L +V ++ + G + +A + ++++
Sbjct: 123 LAQGREIHNRVFYSGLDSFQSLA------NALVTMYARFGSVGDAKRMFQSLQTRDET-S 175
Query: 322 WGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353
W + + A + + A R+ K+ VKP +
Sbjct: 176 WNAVILAHSQSGDWSGALRIFKEMKCDVKPNS 207
>gi|449467271|ref|XP_004151347.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
gi|449530724|ref|XP_004172343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
Length = 543
Score = 250 bits (639), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 130/360 (36%), Positives = 216/360 (60%), Gaps = 6/360 (1%)
Query: 37 HLHSHILKLGFISHVYVATSLLHEYVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSG 95
LH I+KLG ++ ++L+ Y F AR++F++ E + V+WN+MI G +K G
Sbjct: 145 QLHGRIIKLGLQFDPFIRNTILYMYATGGFLSEARRIFNQEMEFDVVSWNSMILGLAKCG 204
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155
+ E+R F++MP++N SW++MI Y+ G + LKLF +M E + P + T+ ++L
Sbjct: 205 EIDESRKLFDKMPVKNPISWNSMIGGYVRNGMFKEALKLFIKM-QEERIQPSEFTMVSLL 263
Query: 156 SGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERN 215
+ + +G+ L G H +I KN +LN + T ++DMY KCG + AL VFE + R+
Sbjct: 264 NASAQIGA--LRQGVWIHEYIKKNNLQLNAIVVTAIIDMYCKCGSIGNALQVFEKIPCRS 321
Query: 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275
+ SW ++I G A G ++A+ +F+M++++ +KP+ ++F VLTAC H +VDEG ++F
Sbjct: 322 LSSWNSMIFGLAVNGCEKEAILVFKMLESSSLKPDCISFMAVLTACNHGAMVDEGMEFFS 381
Query: 276 MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQF 335
+ Y +EP I+HY MVD+ +AGFLEEA + I+TM +E + IIWG L+AC+ +
Sbjct: 382 RMKNTYRIEPSIKHYNLMVDMISRAGFLEEAEQFIKTMPIEKDAIIWGCLLSACRIYGNT 441
Query: 336 DMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+MA+R ++ + + PE G + L+ +++ + GA R M + V K G S I
Sbjct: 442 EMAKRAAEK-VNELDPEETMG-YVLMANIHAWGNNFVGAMEKRVAMRMKKVEKEPGGSFI 499
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 146/323 (45%), Gaps = 28/323 (8%)
Query: 24 KSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDELPERN 80
K CT +L H+H++K G + A+ +L + + G +A +F ++ N
Sbjct: 32 KYCTTMRDL---QQFHAHLIKSGQAIESFAASRIL-AFCASPLGNMDYAYLVFLQMQNPN 87
Query: 81 AVTWNTMIKGYSKSGNVCEARDFFERM-------PLRNVASWSAMIAAYLNAGAYDPGLK 133
+WNT+I+G+S+S N A F M P R ++ ++ AY G G +
Sbjct: 88 LFSWNTVIRGFSQSSNPQIALYLFIDMLVSSQVEPQR--LTYPSIFKAYSQLGLAHDGAQ 145
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
L +I GL D +L ++ + G + ++ F + E+++ + IL
Sbjct: 146 LHGRII-KLGLQFDPFIRNTIL----YMYATGGFLSEARRIFNQEMEFDVVSWNSMIL-- 198
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
AKCG + + +F+ M +N ISW ++I G G ++AL LF MQ ++P+E T
Sbjct: 199 GLAKCGEIDESRKLFDKMPVKNPISWNSMIGGYVRNGMFKEALKLFIKMQEERIQPSEFT 258
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
+L A G + +G + I + +L+ ++D++ K G + A +V +
Sbjct: 259 MVSLLNASAQIGALRQGVWIHEYIKKN-NLQLNAIVVTAIIDMYCKCGSIGNALQVFEKI 317
Query: 314 RLEP----NVIIWGSFLAACKEH 332
N +I+G + C++
Sbjct: 318 PCRSLSSWNSMIFGLAVNGCEKE 340
>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 491
Score = 250 bits (639), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 139/442 (31%), Positives = 228/442 (51%), Gaps = 68/442 (15%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV------------ 62
DSF+ ++K+ + + + +HSH++KLG + +V +L+ Y
Sbjct: 5 DSFTYSFLIKALSA-AGVAPVRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVF 63
Query: 63 -------VTSFGFA-------------RKLFDELPERNAVTWNTMIKGYSKSGNVCEARD 102
V S+ A RKLFDE+PE++ V+WNT++ GY+K+G V A +
Sbjct: 64 DEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFE 123
Query: 103 FFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMIS--------------NEGLTP-- 146
F+RMP RNV SWS M++ Y G + +F +M S +GL
Sbjct: 124 LFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEA 183
Query: 147 --------------DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILV 192
D + ++L+ C+ GS+ L GK H ++ K + + L+
Sbjct: 184 GKLFAQMKEASVELDVAAVVSILAACAESGSLSL--GKRIHRYVRKRNLGRSTHVCNALI 241
Query: 193 DMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE 251
DM+ KCG + A VF+ +++ +SW ++I G A G+ + AL LF M+ G P+
Sbjct: 242 DMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDA 301
Query: 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR 311
+T VL+AC H G VDEGR++F ++ +Y + P+I+HYGCM+DL G+ G ++EA ++I+
Sbjct: 302 VTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIK 361
Query: 312 TMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKW 371
+M EPN +IWGS L+AC+ HK + AE + + L ++P N G + ++ ++Y +W
Sbjct: 362 SMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNE-LSKLQPSNAGN-YAVLSNIYAEAGQW 419
Query: 372 EGAERVRKLMLNQNVRKARGSS 393
+ R M +K GSS
Sbjct: 420 SDMAKARMQMKGTGSQKTAGSS 441
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 46/303 (15%)
Query: 76 LPERNAVTW----------------------------------NTMIKGYSKSGNVCEAR 101
+P R++ T+ N +I YSK+G +AR
Sbjct: 1 MPRRDSFTYSFLIKALSAAGVAPVRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDAR 60
Query: 102 DFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHL 161
F+ MP R+V SW+ +AA + G KLF EM D ++ +L G +
Sbjct: 61 KVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEK-----DTVSWNTILDGYTKA 115
Query: 162 GSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTA 221
G V A + + E N + +V Y K G L+ A ++F+ M +N+++WT
Sbjct: 116 GEV------EAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTI 169
Query: 222 LICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY 281
++ A +G ++A LF M+ V+ + +L AC +G + G++ + + +
Sbjct: 170 MVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYV-RKR 228
Query: 282 DLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERV 341
+L ++D+F K G + A V T ++ + + W S + H D A +
Sbjct: 229 NLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALEL 288
Query: 342 IKQ 344
Q
Sbjct: 289 FAQ 291
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 130/303 (42%), Gaps = 16/303 (5%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+LF+QM SV D +++ IL +C +L++ +H ++ K +V +L+ +
Sbjct: 185 KLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMF 244
Query: 62 V-VTSFGFARKLFD-ELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR----NVASW 115
A +FD E ++++V+WN++I G++ G+ +A + F +M + + +
Sbjct: 245 CKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTM 304
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
+++A + G D G + F M + G+ P G ++ LG GL+ K A
Sbjct: 305 INVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMI---DLLGRGGLI--KEAVDL 359
Query: 176 IVKNEWELNEQIATILVD---MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
I WE NE I L+ ++ + + A+ ++ N ++ L A G
Sbjct: 360 IKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQW 419
Query: 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV-DEGRKYFKMIDEEYD-LEPRIQHY 290
D M+ TG + + L H V D + I E D L ++H
Sbjct: 420 SDMAKARMQMKGTGSQKTAGSSWVELNETFHEFTVGDRKHQDSDQISEMVDRLSSHVKHV 479
Query: 291 GCM 293
GC+
Sbjct: 480 GCV 482
>gi|357132191|ref|XP_003567715.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like [Brachypodium distachyon]
Length = 656
Score = 250 bits (639), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 128/373 (34%), Positives = 215/373 (57%), Gaps = 8/373 (2%)
Query: 24 KSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSF-GFARKLFDELPERNAV 82
K+C + LH+ ILK GF +H++V +L+H Y A+ F + +
Sbjct: 285 KACARHAAVLEGQQLHTVILKDGFDTHLFVQATLIHFYGSCDLLDLAKMQFKLSDKSHIA 344
Query: 83 TWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNE 142
+WN + G + + EAR F+ MP ++ SWS +++ Y+ +G D L+LF M+
Sbjct: 345 SWNAFMAGIVRKNLMHEARQLFDNMPEKDTISWSTLLSGYVQSGHSDMALQLFCLML-GA 403
Query: 143 GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLK 202
G+ P+ +T+ + LS ++ G+ L G+ H +I+ L + + L+DMYAKCG +
Sbjct: 404 GVKPNHITLASTLSAVANSGT--LEQGRWIHDYIISKSIHLTDNLIAGLIDMYAKCGSVA 461
Query: 203 YALMVFELMEER--NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260
A+++F ++E+ ++ W A+IC A G++ +L LF +Q++ +KPN +T+ GVL A
Sbjct: 462 DAVLLFNHVKEKLSSLSPWNAMICSLAIHGHAHMSLELFSQLQSSNIKPNSITYIGVLNA 521
Query: 261 CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVI 320
C H G+V EG+ +F+ + EY + P I+HYGCMVDL G+AG+LEEA +I+TM ++ +V+
Sbjct: 522 CCHAGMVTEGKHHFESMRREYGIPPTIKHYGCMVDLLGRAGYLEEAERLIKTMPVKSDVV 581
Query: 321 IWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKL 380
IWGS LAA + H + E+ ++ L + P N G +C++Y +W VRK
Sbjct: 582 IWGSILAAARSHGNVALGEKAAEE-LAKLDP-NHGASKVALCNIYADAGRWNNVSVVRKE 639
Query: 381 MLNQNVRKARGSS 393
+ +N+ + GSS
Sbjct: 640 LRYENLERLSGSS 652
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 106/420 (25%), Positives = 185/420 (44%), Gaps = 49/420 (11%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
M +F M Q VP + ++ ++ + + +H ++ G V VAT+L+H
Sbjct: 129 MAVFRGMLAQDVPPNEVTLAGVITALARDWAPAPLGMVHGVSVQRGLDGFVIVATNLVHA 188
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + GFAR +F+ +P++N VTWN M+ GY K+G + A + FER+P R+V SW MI
Sbjct: 189 YAAAAQVGFARAVFEWMPDKNTVTWNAMLNGYVKAGAIDMAAEMFERIPERDVVSWLVMI 248
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y+ A L+ + M++ + + C+ +V L G+ H I+K+
Sbjct: 249 DGYIRADCISEALRTYVAMMAEVDTRGNVALLVDFQKACARHAAV--LEGQQLHTVILKD 306
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFEL----------------------------- 210
++ + + L+ Y C L A M F+L
Sbjct: 307 GFDTHLFVQATLIHFYGSCDLLDLAKMQFKLSDKSHIASWNAFMAGIVRKNLMHEARQLF 366
Query: 211 --MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
M E++ ISW+ L+ G G+S+ AL LF +M GVKPN +T L+A ++G ++
Sbjct: 367 DNMPEKDTISWSTLLSGYVQSGHSDMALQLFCLMLGAGVKPNHITLASTLSAVANSGTLE 426
Query: 269 EGRKYFK-MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR-----LEPNVIIW 322
+GR +I + L + ++D++ K G + +A + ++ L P W
Sbjct: 427 QGRWIHDYIISKSIHLTDNL--IAGLIDMYAKCGSVADAVLLFNHVKEKLSSLSP----W 480
Query: 323 GSFLAACKEHKQFDMAERVIKQALRM-VKPENDG--GVFTLICDLYTMNEKWEGAERVRK 379
+ + + H M+ + Q +KP + GV C + E E +R+
Sbjct: 481 NAMICSLAIHGHAHMSLELFSQLQSSNIKPNSITYIGVLNACCHAGMVTEGKHHFESMRR 540
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 124/257 (48%), Gaps = 29/257 (11%)
Query: 38 LHSHILKLGF-ISHVYVATSLLHEYV----VTSFGFARKLFDELPE--RNAVTWNTMIKG 90
LH+ K G +S+++V SLL Y + A LFDE+P R+A NT++
Sbjct: 28 LHALAAKSGLLVSNLFVRNSLLAFYSRLPSSHAPALAHHLFDEIPLALRDAAAHNTLLAA 87
Query: 91 YSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMT 150
++ G++ A+ MP R+ S++ ++ A AG + + +FR M++ + + P+++T
Sbjct: 88 LARGGHLDHAKRMLAEMPQRDTVSFTTVLTALARAGHAEDAMAVFRGMLAQD-VPPNEVT 146
Query: 151 IGAVLSGCSH------LGSV-GLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKY 203
+ V++ + LG V G+ + + GF++ +AT LV YA + +
Sbjct: 147 LAGVITALARDWAPAPLGMVHGVSVQRGLDGFVI---------VATNLVHAYAAAAQVGF 197
Query: 204 ALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA-CV 262
A VFE M ++N ++W A++ G G + A +FE + V + G + A C+
Sbjct: 198 ARAVFEWMPDKNTVTWNAMLNGYVKAGAIDMAAEMFERIPERDVVSWLVMIDGYIRADCI 257
Query: 263 HTGLVDEGRKYFKMIDE 279
L R Y M+ E
Sbjct: 258 SEAL----RTYVAMMAE 270
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 29/186 (15%)
Query: 191 LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250
L+ A+ G L +A + M +R+ +S+T ++ A G++EDA+++F M A V PN
Sbjct: 84 LLAALARGGHLDHAKRMLAEMPQRDTVSFTTVLTALARAGHAEDAMAVFRGMLAQDVPPN 143
Query: 251 EMTFTGVLTAC-----------VHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
E+T GV+TA VH V G F ++ + Y +
Sbjct: 144 EVTLAGVITALARDWAPAPLGMVHGVSVQRGLDGFVIVATNL-----VHAYAAA----AQ 194
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
GF +E + + N + W + L + DMA + ++ PE D +
Sbjct: 195 VGFARAVFEWMP----DKNTVTWNAMLNGYVKAGAIDMAAEMFERI-----PERDVVSWL 245
Query: 360 LICDLY 365
++ D Y
Sbjct: 246 VMIDGY 251
>gi|242042285|ref|XP_002468537.1| hypothetical protein SORBIDRAFT_01g047570 [Sorghum bicolor]
gi|241922391|gb|EER95535.1| hypothetical protein SORBIDRAFT_01g047570 [Sorghum bicolor]
Length = 495
Score = 250 bits (639), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 139/367 (37%), Positives = 224/367 (61%), Gaps = 20/367 (5%)
Query: 43 LKLGFI-SHVYVATSLLHEYVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEA 100
L+LG + + ++VA SL+H Y + A ++FDE+P N V+WN ++ GY+K ++ A
Sbjct: 86 LRLGLLPADLHVANSLVHMYAACAMPDHAHRVFDEIPRPNLVSWNALLDGYAKCRDLPAA 145
Query: 101 RDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNE----------GLTPDQMT 150
R F RMP R+V SWSAMI + G + L LF EM+ N G + +T
Sbjct: 146 RQVFARMPQRDVVSWSAMIDGCVKCGEHREALALF-EMMENAAARSVEDGGGGARANDVT 204
Query: 151 IGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFEL 210
+ +VL C++LG L G+ H + + + LN ++AT LVDMYAKCG + AL +F
Sbjct: 205 MVSVLGACANLGD--LERGRWVHRCLRERGFPLNLKLATSLVDMYAKCGAIHEALEMFWA 262
Query: 211 --MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
+E +V+ W A+I G A G + +++ +F+ MQ GV P+E+T+ +L+ACVH GLVD
Sbjct: 263 VPVESTDVLIWNAVIGGLAVHGMATESVEIFQEMQCAGVAPDEITYLCLLSACVHGGLVD 322
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
E K+F+ + E L P ++HY C+VD+ G+AG LEE Y V+++M ++P+V + G+FL A
Sbjct: 323 EAWKFFRSL-EAQGLRPHVEHYACLVDVLGRAGRLEEVYGVVKSMPMKPSVSVLGAFLNA 381
Query: 329 CKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRK 388
C H ++ E V +Q +++ +P++DG L ++Y + +W+ A++ RK+M ++ V+K
Sbjct: 382 CHLHGWVELGEVVGRQLVQL-QPDHDGRYIGL-SNIYAVARRWQEAKKARKVMEDRGVKK 439
Query: 389 ARGSSVI 395
G S I
Sbjct: 440 VPGFSEI 446
>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Cucumis sativus]
Length = 759
Score = 250 bits (639), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 141/399 (35%), Positives = 230/399 (57%), Gaps = 19/399 (4%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF QM + + D + + + SC+ + T+ + I + + + +V T+LL
Sbjct: 243 LNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDM 302
Query: 61 YVVTSFG---FARKLFDEL-PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
+ FG AR +FDEL +RNAVTWN MI Y++ G + AR+ F+ MP R+V SW+
Sbjct: 303 H--AKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWN 360
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
+MIA Y G ++LF+EMIS + PD++TI +VLS C H+G++ L S
Sbjct: 361 SMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKL----SYWVLD 416
Query: 177 VKNEWELNEQIATI--LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
+ E + I+ L+ MY+KCG + A +F+ M R+V+S+ LI G A G+ ++
Sbjct: 417 IVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKE 476
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
A+ L M+ G++P+ +T+ GVLTAC H GL++EG+ FK I P + HY CMV
Sbjct: 477 AIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ-----APTVDHYACMV 531
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
DL G+AG L+EA +I++M ++P+ ++GS L A + HK+ + E + + +P+N
Sbjct: 532 DLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFEL-EPQNL 590
Query: 355 GGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
G + L+ ++Y +WE +RVR++M ++K+ G S
Sbjct: 591 GN-YVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMS 628
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 102/378 (26%), Positives = 173/378 (45%), Gaps = 74/378 (19%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF H ++ F ++++K NL H+++LKLG I ++ ++L
Sbjct: 85 VSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNL-----FHAYVLKLGHIDDHFIRNAILDM 139
Query: 61 YVVT-SFGFARKLFDEL-------------------------------PERNAVTWNTMI 88
Y AR LF+++ P RN +TW +M+
Sbjct: 140 YAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNIITWTSMV 199
Query: 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ 148
GY+K G++ AR +F+ MP R+V SW+AM +AY L LF +M+ EG+TPD
Sbjct: 200 TGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLE-EGITPDD 258
Query: 149 MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA---- 204
T +S CS +G L S I + LN + T L+DM+AK G L+ A
Sbjct: 259 TTWVVTISSCSSIGDPTL--ADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIF 316
Query: 205 -------------LMV---------------FELMEERNVISWTALICGSAHRGYSEDAL 236
+M+ F+ M +R+V+SW ++I G A G S ++
Sbjct: 317 DELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSI 376
Query: 237 SLF-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
LF EM+ ++P+E+T VL+AC H G + ++ E+ +++ I + ++
Sbjct: 377 ELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREK-NIKLGISGFNSLIF 435
Query: 296 LFGKAGFLEEAYEVIRTM 313
++ K G + +A+ + +TM
Sbjct: 436 MYSKCGSVADAHRIFQTM 453
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 128/306 (41%), Gaps = 58/306 (18%)
Query: 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPERNAV 82
L CTH NL ++ +++KL S +L H YV+ G D+ RNA+
Sbjct: 87 LFKCTHSLNLRPQPFVYIYLIKLAGKS-----GNLFHAYVL-KLGH----IDDHFIRNAI 136
Query: 83 TWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNE 142
+ Y+K+G V AR+ FE+M R +A W++MI+ +G + LF M +
Sbjct: 137 -----LDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARN 191
Query: 143 GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLK 202
+T M G YAK G L+
Sbjct: 192 IITWTSMVTG------------------------------------------YAKMGDLE 209
Query: 203 YALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACV 262
A F+ M ER+V+SW A+ A + ++AL+LF M G+ P++ T+ +++C
Sbjct: 210 SARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCS 269
Query: 263 HTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
G +MID+++ + ++D+ K G LE A + + + N + W
Sbjct: 270 SIGDPTLADSILRMIDQKHIVLNSFVKTA-LLDMHAKFGNLEIARNIFDELGSQRNAVTW 328
Query: 323 GSFLAA 328
++A
Sbjct: 329 NIMISA 334
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 105/247 (42%), Gaps = 26/247 (10%)
Query: 103 FFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLG 162
F P + + +S M+ Y GA++ + LF+ + L P ++
Sbjct: 56 IFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFK-CTHSLNLRPQPFVYIYLIK------ 108
Query: 163 SVGLLMGKSA---HGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISW 219
L GKS H +++K + I ++DMYAK G + A +FE M ER + W
Sbjct: 109 ----LAGKSGNLFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADW 164
Query: 220 TALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE 279
++I G G +A+ LF MM A N +T+T ++T G ++ R+YF + E
Sbjct: 165 NSMISGCWKSGNETEAVVLFNMMPAR----NIITWTSMVTGYAKMGDLESARRYFDEMPE 220
Query: 280 EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE---PNVIIWGSFLAACKEHKQFD 336
+ + M + + +EA + M E P+ W +++C
Sbjct: 221 R-----SVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPT 275
Query: 337 MAERVIK 343
+A+ +++
Sbjct: 276 LADSILR 282
>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570 [Vitis vinifera]
Length = 561
Score = 250 bits (638), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 150/459 (32%), Positives = 236/459 (51%), Gaps = 69/459 (15%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH- 59
+ LF +M R D F+ ++K+C+ + H ++ G V+V TSL+
Sbjct: 108 VSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDL 167
Query: 60 ------------------EYVVTSF-----GFA--------RKLFDELPERNAVTWN--- 85
E V S+ G+A RKLFDE+PE+NAV+WN
Sbjct: 168 YGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAII 227
Query: 86 ----------------------------TMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
TMI GY+KSG++ AR FE P R+V +WSA
Sbjct: 228 SGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSA 287
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
+I+ Y+ G + +K+F EM S + PD+ + +++S CS +GS L + K ++
Sbjct: 288 LISGYVQNGQPNEAVKIFLEMCS-RNVKPDEFIMVSLMSACSQMGS--LELAKWVDDYVR 344
Query: 178 KNEWELNE-QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
K+ +++ + L+DM AKCG + A +FE M +R++IS+ +++ G + G A+
Sbjct: 345 KSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAV 404
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
SLF M G+ P+++ FT +LTAC GLVDEG YF+ + +Y + P HY CMVDL
Sbjct: 405 SLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDL 464
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
G+AG L+EAYE++++M +EP+ WG+ L ACK H ++ E V Q + +P+N G
Sbjct: 465 LGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDIELGEVVADQLFEL-EPQNAGN 523
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ ++Y E+W +R M + +RK G S I
Sbjct: 524 -YVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCSWI 561
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 151/337 (44%), Gaps = 49/337 (14%)
Query: 18 SILHILKSCTHFNNLTVIHHLHSHILKLGF-ISHVYVATSLLHEYVVTSFGFARKLFDEL 76
SI +LK+CT + + +H+ I++ G H ++ L +++F + +F+ +
Sbjct: 27 SISTLLKACT---TTSTLEQVHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVFNGV 83
Query: 77 PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFR 136
+ V WNT IKGYS++ +V F RM +
Sbjct: 84 SSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDA------------------------ 119
Query: 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA 196
PD+ T +++ CS + G+ G + HG V+ + + T L+D+Y
Sbjct: 120 --------VPDKFTYPSLIKACSKV--CGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYG 169
Query: 197 KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTG 256
KCG + A VF+ M ERNV+SWTA+I G A +A LF+ M + N +++
Sbjct: 170 KCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMP----EKNAVSWNA 225
Query: 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE 316
+++ V G + RK F + + + M+D + K+G + A V E
Sbjct: 226 IISGYVKCGDLRSARKMFDEMPHR-----NVVSFTTMIDGYAKSGDMASARFVFEEAP-E 279
Query: 317 PNVIIWGSFLAACKEHKQFDMAERV-IKQALRMVKPE 352
+V+ W + ++ ++ Q + A ++ ++ R VKP+
Sbjct: 280 RDVVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPD 316
>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Cucumis sativus]
Length = 759
Score = 250 bits (638), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 141/399 (35%), Positives = 230/399 (57%), Gaps = 19/399 (4%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF QM + + D + + + SC+ + T+ + I + + + +V T+LL
Sbjct: 243 LNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDM 302
Query: 61 YVVTSFG---FARKLFDEL-PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
+ FG AR +FDEL +RNAVTWN MI Y++ G + AR+ F+ MP R+V SW+
Sbjct: 303 H--AKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWN 360
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
+MIA Y G ++LF+EMIS + PD++TI +VLS C H+G++ L S
Sbjct: 361 SMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKL----SYWVLD 416
Query: 177 VKNEWELNEQIATI--LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
+ E + I+ L+ MY+KCG + A +F+ M R+V+S+ LI G A G+ ++
Sbjct: 417 IVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKE 476
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
A+ L M+ G++P+ +T+ GVLTAC H GL++EG+ FK I P + HY CMV
Sbjct: 477 AIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ-----APTVDHYACMV 531
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
DL G+AG L+EA +I++M ++P+ ++GS L A + HK+ + E + + +P+N
Sbjct: 532 DLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFEL-EPQNL 590
Query: 355 GGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
G + L+ ++Y +WE +RVR++M ++K+ G S
Sbjct: 591 GN-YVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMS 628
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 101/378 (26%), Positives = 173/378 (45%), Gaps = 74/378 (19%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF H ++ F ++++K N+ H+++LKLG I ++ ++L
Sbjct: 85 VSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNM-----FHAYVLKLGHIDDHFIRNAILDM 139
Query: 61 YVVT-SFGFARKLFDEL-------------------------------PERNAVTWNTMI 88
Y AR LF+++ P RN +TW +M+
Sbjct: 140 YAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNIITWTSMV 199
Query: 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ 148
GY+K G++ AR +F+ MP R+V SW+AM +AY L LF +M+ EG+TPD
Sbjct: 200 TGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLE-EGITPDD 258
Query: 149 MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA---- 204
T +S CS +G L S I + LN + T L+DM+AK G L+ A
Sbjct: 259 TTWVVTISSCSSIGDPTL--ADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIF 316
Query: 205 -------------LMV---------------FELMEERNVISWTALICGSAHRGYSEDAL 236
+M+ F+ M +R+V+SW ++I G A G S ++
Sbjct: 317 DELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSI 376
Query: 237 SLF-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
LF EM+ ++P+E+T VL+AC H G + ++ E+ +++ I + ++
Sbjct: 377 ELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREK-NIKLGISGFNSLIF 435
Query: 296 LFGKAGFLEEAYEVIRTM 313
++ K G + +A+ + +TM
Sbjct: 436 MYSKCGSVADAHRIFQTM 453
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 75/306 (24%), Positives = 128/306 (41%), Gaps = 58/306 (18%)
Query: 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPERNAV 82
L CTH NL ++ +++KL S ++ H YV+ G D+ RNA+
Sbjct: 87 LFKCTHSLNLRPQPFVYIYLIKLAGKS-----GNMFHAYVL-KLGH----IDDHFIRNAI 136
Query: 83 TWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNE 142
+ Y+K+G V AR+ FE+M R +A W++MI+ +G + LF M +
Sbjct: 137 -----LDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARN 191
Query: 143 GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLK 202
+T M G YAK G L+
Sbjct: 192 IITWTSMVTG------------------------------------------YAKMGDLE 209
Query: 203 YALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACV 262
A F+ M ER+V+SW A+ A + ++AL+LF M G+ P++ T+ +++C
Sbjct: 210 SARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCS 269
Query: 263 HTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
G +MID+++ + ++D+ K G LE A + + + N + W
Sbjct: 270 SIGDPTLADSILRMIDQKHIVLNSFVKTA-LLDMHAKFGNLEIARNIFDELGSQRNAVTW 328
Query: 323 GSFLAA 328
++A
Sbjct: 329 NIMISA 334
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 105/247 (42%), Gaps = 26/247 (10%)
Query: 103 FFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLG 162
F P + + +S M+ Y GA++ + LF+ + L P ++
Sbjct: 56 IFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFK-CTHSLNLRPQPFVYIYLIK------ 108
Query: 163 SVGLLMGKSA---HGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISW 219
L GKS H +++K + I ++DMYAK G + A +FE M ER + W
Sbjct: 109 ----LAGKSGNMFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADW 164
Query: 220 TALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE 279
++I G G +A+ LF MM A N +T+T ++T G ++ R+YF + E
Sbjct: 165 NSMISGCWKSGNETEAVVLFNMMPAR----NIITWTSMVTGYAKMGDLESARRYFDEMPE 220
Query: 280 EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE---PNVIIWGSFLAACKEHKQFD 336
+ + M + + +EA + M E P+ W +++C
Sbjct: 221 R-----SVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPT 275
Query: 337 MAERVIK 343
+A+ +++
Sbjct: 276 LADSILR 282
>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
Length = 602
Score = 250 bits (638), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 131/396 (33%), Positives = 223/396 (56%), Gaps = 6/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF M + D ++ ++ +C +L V +H I K G +V+++L+
Sbjct: 177 LELFRTMREVGLTPDMVAVSTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSSTLIST 236
Query: 61 Y-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y S +A + F E P +N V WNTMI + N+ + F+ MP R+V SW++MI
Sbjct: 237 YGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMI 296
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ G Y L F EM G++P+ +T+ + LS C+ G+ L G H ++ KN
Sbjct: 297 GGFARIGQYQEALTWFHEM-EFSGVSPNALTLLSTLSACASHGA--LDTGAWIHAYVDKN 353
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + + + L+DMY+KCG + A+ +FE R++ +WT+++CG A G E AL F
Sbjct: 354 DMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYF 413
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M+ V+P+++T GVL+AC H GL+D+G YF+ +++ + L P+++HYG MVDL G+
Sbjct: 414 SKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGXMVDLLGR 473
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
G L+EAY++I M +E N IIWG+FL+AC+ H ++ E ++ L + D
Sbjct: 474 MGCLKEAYDLIMGMPMEANEIIWGAFLSACRVHNNVELGEVAARRLLGLXP--RDPWARV 531
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++ ++Y KW+ + +RK + + ++K+ G S I
Sbjct: 532 MLSNMYAEEAKWDRSMGLRKEIKKKGLKKSPGCSSI 567
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/367 (24%), Positives = 160/367 (43%), Gaps = 68/367 (18%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV 63
+ Q R + + + +++LK+ + +H+ +++ GF +V+ +LL YV
Sbjct: 79 YMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVA 138
Query: 64 TSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
G R++FDE+ + V W +I+ Y VC F E+
Sbjct: 139 CGLVGKGRQVFDEMRQPGLVLWTLIIRAY-----VCVT--FPEK---------------- 175
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
L+LFR M GLTPD + + V+S C LG +G+ K+ H FI K+ E
Sbjct: 176 --------ALELFRTM-REVGLTPDMVAVSTVVSACGLLGDLGV--AKAMHCFIEKSGIE 224
Query: 183 LNEQIATILVDMYAKCGFLKYAL-------------------------------MVFELM 211
++ +++ L+ Y +CG L YA +F+ M
Sbjct: 225 VDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSM 284
Query: 212 EERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR 271
+R+V+SW ++I G A G ++AL+ F M+ +GV PN +T L+AC G +D G
Sbjct: 285 PDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGA 344
Query: 272 KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKE 331
+D+ D+ ++D++ K G +++A ++ ++ W S +
Sbjct: 345 WIHAYVDKN-DMNRDGSLDSSLIDMYSKCGDIDKAVQIFEE-STRRDLFTWTSIVCGLAM 402
Query: 332 HKQFDMA 338
H + + A
Sbjct: 403 HGRGEKA 409
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 111/244 (45%), Gaps = 15/244 (6%)
Query: 106 RMPLRNVASWSAMIAAYLNAG--AYDPGLKLFREMISNEGLTPDQMT----IGAVLSGCS 159
R+ NV W+ MI + G DP L + + + GL P+ T + A++SG
Sbjct: 48 RLDCANVFVWNTMIRKQVENGLITRDPPLLYYMQGL-RAGLRPNGHTFMYLLKALVSGQE 106
Query: 160 HLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISW 219
+ G+ H +V+ + +E ++ L+ Y CG + VF+ M + ++ W
Sbjct: 107 ------VKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLW 160
Query: 220 TALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE 279
T +I + E AL LF M+ G+ P+ + + V++AC G + + I E
Sbjct: 161 TLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAVSTVVSACGLLGDLGVAKAMHCFI-E 219
Query: 280 EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAE 339
+ +E ++ +G+ G L+ AY + ++ N+++W + + EH ++ +
Sbjct: 220 KSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMK-NIVVWNTMIHQSVEHNNLELGK 278
Query: 340 RVIK 343
++ +
Sbjct: 279 QLFQ 282
>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
Length = 842
Score = 250 bits (638), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 135/396 (34%), Positives = 227/396 (57%), Gaps = 5/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F+ M V D S+L + SC+ N+ H ++L+ GF S + +L+
Sbjct: 322 LGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDM 381
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y+ A ++FD + + VTWN+++ GY ++G V A + FE MP +N+ SW+ +I
Sbjct: 382 YMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTII 441
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ + ++ +++F M S EG+ D +T+ ++ S C HLG++ L K + +I KN
Sbjct: 442 SGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDL--AKWIYYYIEKN 499
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+L+ ++ T LVDM+++CG + A+ +F + R+V +WTA I A G +E A+ LF
Sbjct: 500 GIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELF 559
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+ M G+KP+ + F G LTAC H GLV +G++ F + + + + P HYGCMVDL G+
Sbjct: 560 DDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGR 619
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG LEEA ++I M +EPN +IW S LAAC+ +MA ++ ++++ PE G +
Sbjct: 620 AGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEK-IQVLAPERTGS-YV 677
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y +W +VR M + +RK G+S I
Sbjct: 678 LLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSI 713
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/336 (23%), Positives = 144/336 (42%), Gaps = 34/336 (10%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF +M + D ++ L +C +H I+K+G+ ++V SL+H
Sbjct: 121 LFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVH--- 177
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
Y++ G + AR F+ M RNV SW++MI Y
Sbjct: 178 ---------------------------FYAECGELDSARKVFDEMSERNVVSWTSMICGY 210
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+ LF M+ +E +TP+ +T+ V+S C+ L L G+ + FI + E
Sbjct: 211 ARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLED--LETGEKVYAFIRNSGIE 268
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
+N+ + + LVDMY KC + A +F+ N+ A+ +G + +AL +F +M
Sbjct: 269 VNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLM 328
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
+GV+P+ ++ +++C + G+ + E ++D++ K
Sbjct: 329 MDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRN-GFESWDNICNALIDMYMKCHR 387
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
+ A+ + M V+ W S +A E+ + D A
Sbjct: 388 QDTAFRIFDRMS-NKTVVTWNSIVAGYVENGEVDAA 422
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 131/290 (45%), Gaps = 44/290 (15%)
Query: 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY----VVTSFGFARKLFDELPE 78
LK+C + L + H + K G + V T L+ S FA+++F+
Sbjct: 39 LKNCKTIDELKMFHR---SLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSES 95
Query: 79 RNAV-TWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
+N++I+GY+ SG EA + LF
Sbjct: 96 YGTCFMYNSLIRGYASSGLCNEA-------------------------------ILLFLR 124
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
M+ N G++PD+ T LS C+ + G G HG IVK + + + LV YA+
Sbjct: 125 MM-NSGISPDKYTFPFGLSACAKSRAKG--NGIQIHGLIVKMGYAKDLFVQNSLVHFYAE 181
Query: 198 CGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL-FEMMQATGVKPNEMTFTG 256
CG L A VF+ M ERNV+SWT++ICG A R +++DA+ L F M++ V PN +T
Sbjct: 182 CGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVC 241
Query: 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
V++AC ++ G K + I +E +VD++ K ++ A
Sbjct: 242 VISACAKLEDLETGEKVYAFI-RNSGIEVNDLMVSALVDMYMKCNAIDVA 290
>gi|334187520|ref|NP_001190262.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
gi|223635618|sp|P0C8Q7.1|PP369_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08305
gi|332003897|gb|AED91280.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
Length = 534
Score = 250 bits (638), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 134/400 (33%), Positives = 233/400 (58%), Gaps = 12/400 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ ++ QM R + D + ++KS + +N + LH ++K G +++ +L+H
Sbjct: 93 ISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHM 152
Query: 61 YVVTSF---GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
Y SF ARKLFDE+P +N VTWN+++ Y+KSG+V AR F+ M R+V +WS+
Sbjct: 153 Y--GSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSS 210
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MI Y+ G Y+ L++F +M+ +++T+ +V+ C+HLG++ GK+ H +I+
Sbjct: 211 MIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALN--RGKTVHRYIL 268
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVF--ELMEERNVISWTALICGSAHRGYSEDA 235
L + T L+DMYAKCG + A VF ++E + + W A+I G A G+ ++
Sbjct: 269 DVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRES 328
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
L LF M+ + + P+E+TF +L AC H GLV E +FK + +E EP+ +HY CMVD
Sbjct: 329 LQLFHKMRESKIDPDEITFLCLLAACSHGGLVKEAWHFFKSL-KESGAEPKSEHYACMVD 387
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
+ +AG +++A++ I M ++P + G+ L C H ++AE V K+ + + +P NDG
Sbjct: 388 VLSRAGLVKDAHDFISEMPIKPTGSMLGALLNGCINHGNLELAETVGKKLIEL-QPHNDG 446
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ + ++Y +N+++ A +R+ M + V+K G S++
Sbjct: 447 R-YVGLANVYAINKQFRAARSMREAMEKKGVKKIAGHSIL 485
>gi|357151860|ref|XP_003575929.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g14820-like, partial [Brachypodium
distachyon]
Length = 498
Score = 250 bits (638), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 137/392 (34%), Positives = 220/392 (56%), Gaps = 6/392 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L ++M R V D + +L +C H +L +HS+I ++++L++ Y
Sbjct: 81 LLNKMKRSRVVPDQVILATVLSTCGHTRHLRSGKTIHSYIQVSDIFVDARLSSALINMYA 140
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
A K++ + ++ V+ M+ GY+K+G + AR F M ++V SWSAMI+A
Sbjct: 141 SCMDMEMADKIYSGMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDVVSWSAMISA 200
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y L LF +M G++PD++T+ +V+S C+++GS L + H + + +
Sbjct: 201 YAENNQPSEVLNLFNKM-QGCGVSPDEITMLSVISACANIGS--LDKARWIHSIVGNHGF 257
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
I L+DM++KCG L AL +F M +NVI+WT++I A G AL+LF
Sbjct: 258 YKILSICNALIDMFSKCGSLTLALNMFNAMPRKNVITWTSMIAAFAMHGDGPSALTLFGQ 317
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M+ GV+PN +TF +L AC H GLV EGR F+ + +EY +EP+ +HYGCMVDL G+A
Sbjct: 318 MKGEGVEPNGVTFLVLLYACCHAGLVYEGRSLFECMLQEYRIEPKHEHYGCMVDLMGRAK 377
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
++EA ++I +M + PNV IWGS LAAC H ++ E K+ L + P +DG + L+
Sbjct: 378 LMQEAVDLIESMHIRPNVAIWGSLLAACWMHGDIELGEFAAKKILEL-DPNHDGA-YVLL 435
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
+++ + W A+++R +M V K G S
Sbjct: 436 SNIHAKSGNWNNAQKLRVMMKVHGVSKETGYS 467
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 130/278 (46%), Gaps = 36/278 (12%)
Query: 86 TMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLT 145
++ Y+ V EAR F+ MP R++ +W M+ +Y N Y L L +M + +
Sbjct: 33 ALVGAYAACQRVAEARRVFDGMPERDLVAWGVMLDSYFNTQNYRETLLLLNKMKRSR-VV 91
Query: 146 PDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC------- 198
PDQ+ + VLS C H + L GK+ H +I ++ ++ ++++ L++MYA C
Sbjct: 92 PDQVILATVLSTCGH--TRHLRSGKTIHSYIQVSDIFVDARLSSALINMYASCMDMEMAD 149
Query: 199 ------------------------GFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
G ++ A +F M E++V+SW+A+I A +
Sbjct: 150 KIYSGMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDVVSWSAMISAYAENNQPSE 209
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
L+LF MQ GV P+E+T V++AC + G +D+ R + I + + ++
Sbjct: 210 VLNLFNKMQGCGVSPDEITMLSVISACANIGSLDKAR-WIHSIVGNHGFYKILSICNALI 268
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
D+F K G L A + M NVI W S +AA H
Sbjct: 269 DMFSKCGSLTLALNMFNAMP-RKNVITWTSMIAAFAMH 305
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 101/253 (39%), Gaps = 39/253 (15%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF++M V D ++L ++ +C + +L +HS + GF + + +L+
Sbjct: 211 LNLFNKMQGCGVSPDEITMLSVISACANIGSLDKARWIHSIVGNHGFYKILSICNALIDM 270
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
+ S A +F+ +P +N +TW +MI ++ G+ A F +M
Sbjct: 271 FSKCGSLTLALNMFNAMPRKNVITWTSMIAAFAMHGDGPSALTLFGQM------------ 318
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
EG+ P+ +T +L C H G V G+S +++
Sbjct: 319 --------------------KGEGVEPNGVTFLVLLYACCHAGLV--YEGRSLFECMLQE 356
Query: 180 -EWELNEQIATILVDMYAKCGFLKYALMVFELMEER-NVISWTALICGSAHRGYSEDALS 237
E + +VD+ + ++ A+ + E M R NV W +L+ G E L
Sbjct: 357 YRIEPKHEHYGCMVDLMGRAKLMQEAVDLIESMHIRPNVAIWGSLLAACWMHGDIE--LG 414
Query: 238 LFEMMQATGVKPN 250
F + + PN
Sbjct: 415 EFAAKKILELDPN 427
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 80/195 (41%), Gaps = 31/195 (15%)
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR 229
+ HG V+ + + + T LV YA C + A VF+ M ER++++W ++ +
Sbjct: 13 RGTHGIAVRVGADEDGFVGTALVGAYAACQRVAEARRVFDGMPERDLVAWGVMLDSYFNT 72
Query: 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR---KYFKMIDEEYDLE-- 284
+ L L M+ + V P+++ VL+ C HT + G+ Y ++ D D
Sbjct: 73 QNYRETLLLLNKMKRSRVVPDQVILATVLSTCGHTRHLRSGKTIHSYIQVSDIFVDARLS 132
Query: 285 -PRIQHYGCMVDL------------------------FGKAGFLEEAYEVIRTMRLEPNV 319
I Y +D+ + K G +E A + M E +V
Sbjct: 133 SALINMYASCMDMEMADKIYSGMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMA-EKDV 191
Query: 320 IIWGSFLAACKEHKQ 334
+ W + ++A E+ Q
Sbjct: 192 VSWSAMISAYAENNQ 206
>gi|15218823|ref|NP_171850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180302|sp|Q9LR72.1|PPR7_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g03510
gi|9280666|gb|AAF86535.1|AC002560_28 F21B7.13 [Arabidopsis thaliana]
gi|332189459|gb|AEE27580.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 429
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 144/398 (36%), Positives = 226/398 (56%), Gaps = 11/398 (2%)
Query: 1 MQLFSQMHRQ-SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+ LF QMH ++P D+ LKSC + +H+H +K F+S+ +V +LL
Sbjct: 32 LNLFLQMHSSFALPLDAHVFSLALKSCAAAFRPVLGGSVHAHSVKSNFLSNPFVGCALLD 91
Query: 60 EY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP-LRNVASWSA 117
Y S ARKLFDE+P+RNAV WN MI Y+ G V EA + +E M + N +S++A
Sbjct: 92 MYGKCLSVSHARKLFDEIPQRNAVVWNAMISHYTHCGKVKEAVELYEAMDVMPNESSFNA 151
Query: 118 MIAAYLNA--GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
+I + G+Y ++ +R+MI P+ +T+ A++S CS +G+ L+ K H +
Sbjct: 152 IIKGLVGTEDGSYR-AIEFYRKMIEFR-FKPNLITLLALVSACSAIGAFRLI--KEIHSY 207
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
+N E + Q+ + LV+ Y +CG + Y +VF+ ME+R+V++W++LI A G +E A
Sbjct: 208 AFRNLIEPHPQLKSGLVEAYGRCGSIVYVQLVFDSMEDRDVVAWSSLISAYALHGDAESA 267
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
L F+ M+ V P+++ F VL AC H GL DE YFK + +Y L HY C+VD
Sbjct: 268 LKTFQEMELAKVTPDDIAFLNVLKACSHAGLADEALVYFKRMQGDYGLRASKDHYSCLVD 327
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
+ + G EEAY+VI+ M +P WG+ L AC+ + + ++AE + + L MV+PEN
Sbjct: 328 VLSRVGRFEEAYKVIQAMPEKPTAKTWGALLGACRNYGEIELAE-IAARELLMVEPENPA 386
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
+ L+ +Y + E AER+R M V+ + GSS
Sbjct: 387 N-YVLLGKIYMSVGRQEEAERLRLKMKESGVKVSPGSS 423
>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Glycine max]
Length = 785
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 138/398 (34%), Positives = 222/398 (55%), Gaps = 10/398 (2%)
Query: 1 MQLFSQMHRQS-VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
++ FS M + S + D F++ +L +C + +L + +H+HI++ V +L+
Sbjct: 262 LETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALIS 321
Query: 60 EYVVT-SFGFARKLFD--ELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
Y + + A ++ + P N + + +++ GY K G++ AR F+ + R+V +W+
Sbjct: 322 MYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWT 381
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
AMI Y G L LFR MI EG P+ T+ AVLS S L S L GK H
Sbjct: 382 AMIVGYAQNGLISDALVLFRLMI-REGPKPNNYTLAAVLSVISSLAS--LDHGKQLHAVA 438
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFE-LMEERNVISWTALICGSAHRGYSEDA 235
++ E + + L+ MY++ G +K A +F + R+ ++WT++I A G +A
Sbjct: 439 IRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEA 498
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
+ LFE M +KP+ +T+ GVL+AC H GLV++G+ YF ++ +++EP HY CM+D
Sbjct: 499 IELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMID 558
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
L G+AG LEEAY IR M +EP+V+ WGS L++C+ HK D+A +V + L ++ P N G
Sbjct: 559 LLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLA-KVAAEKLLLIDPNNSG 617
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
L L KWE A +VRK M ++ V+K +G S
Sbjct: 618 AYLALANTLSACG-KWEDAAKVRKSMKDKAVKKEQGFS 654
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 119/428 (27%), Positives = 211/428 (49%), Gaps = 51/428 (11%)
Query: 13 PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGF-ISHVYVATSLLHEYVVT-SFGFAR 70
PS S + +H+L+S + + +H+ I+K G V++ +LL+ YV T S A
Sbjct: 9 PSHSDACVHLLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAH 68
Query: 71 KLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDP 130
+LFDE+P + +WNT++ ++K+GN+ AR F+ +P + SW+ MI Y + G +
Sbjct: 69 RLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKS 128
Query: 131 GLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATI 190
+ F M+S+ G++P Q T VL+ C+ + L +GK H F+VK +A
Sbjct: 129 AVHAFLRMVSS-GISPTQFTFTNVLASCA--AAQALDVGKKVHSFVVKLGQSGVVPVANS 185
Query: 191 LVDMYAKCG-----------------------------FLKY--ALMVFELMEERNVISW 219
L++MYAKCG F ++ AL +F+ M + +++SW
Sbjct: 186 LLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSW 245
Query: 220 TALICGSAHRGYSEDALSLFE-MMQATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMI 277
++I G H+GY AL F M++++ +KP++ T VL+AC + + G++ + ++
Sbjct: 246 NSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIV 305
Query: 278 DEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR-TMRLEPNVIIWGSFLAACKEHKQFD 336
+ D+ + + ++ ++ K+G +E A+ ++ T NVI + S L + D
Sbjct: 306 RADVDIAGAVGN--ALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDID 363
Query: 337 MAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ-----NVRKARG 391
A R I +L+ D +T + Y N A + +LM+ + N A
Sbjct: 364 PA-RAIFDSLK----HRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAV 418
Query: 392 SSVISSLS 399
SVISSL+
Sbjct: 419 LSVISSLA 426
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 98/385 (25%), Positives = 180/385 (46%), Gaps = 38/385 (9%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV 63
F +M + F+ ++L SC L V +HS ++KLG V VA SLL+ Y
Sbjct: 133 FLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAK 192
Query: 64 TSFG-FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
A+ +FD + ++ TWNTMI + + A F++M ++ SW+++I Y
Sbjct: 193 CGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGY 252
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+ G L+ F M+ + L PD+ T+G+VLS C++ S+ L GK H IV+ + +
Sbjct: 253 CHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKL--GKQIHAHIVRADVD 310
Query: 183 LNEQIATILVDMYAKCGFLKY---------------------------------ALMVFE 209
+ + L+ MYAK G ++ A +F+
Sbjct: 311 IAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFD 370
Query: 210 LMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
++ R+V++WTA+I G A G DAL LF +M G KPN T VL+ +D
Sbjct: 371 SLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDH 430
Query: 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAAC 329
G++ + + + ++ ++ ++G +++A ++ + + + W S + +
Sbjct: 431 GKQ-LHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSL 489
Query: 330 KEHKQFDMAERVIKQALRM-VKPEN 353
+H + A + ++ LR+ +KP++
Sbjct: 490 AQHGLGNEAIELFEKMLRINLKPDH 514
>gi|297842491|ref|XP_002889127.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334968|gb|EFH65386.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 466
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 135/397 (34%), Positives = 218/397 (54%), Gaps = 33/397 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+Q++ M R +V D +++ ++K+ ++ + LHS ++LGF+
Sbjct: 101 VQVYLGMVRSNVLPDRYTLPIVIKAAVQIHDFPLGKQLHSVAVRLGFVG----------- 149
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
DE E +T Y K+G + AR+ F+ P R + SW+A+I
Sbjct: 150 -------------DEFCESGFITL------YCKAGELENARNVFDENPERKLGSWNAIIG 190
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
+AG + +++F EM G PD T+ +V S C LG + L K E
Sbjct: 191 GLNHAGRANEAVEMFMEM-RRSGFEPDDFTMVSVTSACGGLGDLNLAFQLHKCVLQAKTE 249
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ + + L+DMY KCG + +A+ VFE M +RNV+SW+++I G A G + +AL F
Sbjct: 250 EKSDVMMMNSLIDMYGKCGRMDFAIQVFEEMPQRNVVSWSSMITGYAANGNTLEALECFR 309
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ GV+PN++TF GVL+ACVH GLV+EG+ YF M+ E++LEP + HYGC+VDL +
Sbjct: 310 QMREFGVRPNKITFVGVLSACVHGGLVEEGKAYFAMMKSEFNLEPGLSHYGCIVDLLSRD 369
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G L+EA +V+ M ++PNV++WG + C++ +MAE V + + +P ND GV+ +
Sbjct: 370 GQLKEAKKVVEEMPMKPNVMVWGCLMGGCEKFGDVEMAEWVAPYMVEL-EPWND-GVYVV 427
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
+ ++Y + W+ ERVRK+M + V K S S+
Sbjct: 428 LANVYALKGMWKDVERVRKVMKEKKVAKIPAYSYAST 464
>gi|242059647|ref|XP_002458969.1| hypothetical protein SORBIDRAFT_03g043550 [Sorghum bicolor]
gi|241930944|gb|EES04089.1| hypothetical protein SORBIDRAFT_03g043550 [Sorghum bicolor]
Length = 530
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 129/325 (39%), Positives = 201/325 (61%), Gaps = 5/325 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR++FDE+P R+ +W+ +I GY K G V AR+ F++MP +N+ + +AMI Y G
Sbjct: 199 ARRVFDEMPTRDTASWSVLIAGYCKGGLVQNARELFDKMPSKNLVARTAMINGYAQTGQP 258
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L LFR++ G+ PD T+ V+S S +GS L A ++ + + E N ++
Sbjct: 259 KAALALFRDL-EAAGIEPDGATMVGVISAVSQIGSTELAGWVGA--YVDRKKIERNVKVL 315
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
T LVDM+AKCG ++ AL F + + + +TALI G A G+ + ALS+FE MQ VK
Sbjct: 316 TALVDMHAKCGNIEQALSAFREIPQPDAYPYTALISGLATHGHEKLALSVFERMQVQAVK 375
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+ +TF GVLTAC HTGLVD+G +Y++ + +Y + R HY C++D+ G+AG +EEA+E
Sbjct: 376 PDPITFVGVLTACSHTGLVDKGLEYWEAMVRDYGIVRRADHYACVIDMLGRAGRIEEAFE 435
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+++TM + P+ G+ L+ACK ++ ++AE ++ L ++P N G + L+ ++Y
Sbjct: 436 MVQTMPMGPHPGALGALLSACKTYENVEIAE-IVANKLFELEPWNTGN-YILLSNIYAGK 493
Query: 369 EKWEGAERVRKLMLNQNVRKARGSS 393
E WE AERVR LM + K GS+
Sbjct: 494 ELWEEAERVRSLMRTKLPFKNPGST 518
>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Cucumis sativus]
Length = 609
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 139/396 (35%), Positives = 220/396 (55%), Gaps = 36/396 (9%)
Query: 1 MQLFSQMHR-QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
++LFSQMH S+ D+ + + K+ ++++ +HS +++ GF S +V SL+H
Sbjct: 120 VELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVH 179
Query: 60 EYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y V G++ A FE M R+ +W+++I
Sbjct: 180 MYSVL------------------------------GSLXSAYQVFEIMSYRDRVAWNSVI 209
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ G + L L+REM +EG+ PD T+ ++LS C LG++ L G+ H ++VK
Sbjct: 210 NGFALNGMPNEALTLYREM-GSEGVEPDGFTMVSLLSACVELGALAL--GERVHMYMVKV 266
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
N+ + L+D+Y+KCG + A VF+ MEER+V+SWT+LI G A G +AL LF
Sbjct: 267 GLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLF 326
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
++ G+KP+E+TF GVL AC H G++DEG YF+ + EEY + PRI+H+GCMVDL +
Sbjct: 327 GELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCR 386
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG + +AY+ IR M + PN +IW + L AC H ++ E + R+ + G F
Sbjct: 387 AGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRL--EQRHSGDFV 444
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ +LY +W + VRK+ML + V+K G S++
Sbjct: 445 LLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLV 480
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 119/261 (45%), Gaps = 35/261 (13%)
Query: 68 FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
FA ++F+++ N TWNTMI+G+++S N
Sbjct: 87 FAAQIFNQIQAPNIFTWNTMIRGFAESENP------------------------------ 116
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
P ++LF +M + + PD T + + L V L G+ H +V+N ++ +
Sbjct: 117 -SPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSL--GEGIHSVVVRNGFDSLRFV 173
Query: 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
LV MY+ G L A VFE+M R+ ++W ++I G A G +AL+L+ M + GV
Sbjct: 174 QNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGV 233
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
+P+ T +L+ACV G + G + M + L ++DL+ K G +A
Sbjct: 234 EPDGFTMVSLLSACVELGALALGER-VHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQ 292
Query: 308 EVIRTMRLEPNVIIWGSFLAA 328
+V M E +V+ W S +
Sbjct: 293 KVFDEME-ERSVVSWTSLIVG 312
>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
Length = 938
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 135/396 (34%), Positives = 227/396 (57%), Gaps = 5/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F+ M V D S+L + SC+ N+ H ++L+ GF S + +L+
Sbjct: 322 LGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDM 381
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y+ A ++FD + + VTWN+++ GY ++G V A + FE MP +N+ SW+ +I
Sbjct: 382 YMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTII 441
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ + ++ +++F M S EG+ D +T+ ++ S C HLG++ L K + +I KN
Sbjct: 442 SGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDL--AKWIYYYIEKN 499
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+L+ ++ T LVDM+++CG + A+ +F + R+V +WTA I A G +E A+ LF
Sbjct: 500 GIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELF 559
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+ M G+KP+ + F G LTAC H GLV +G++ F + + + + P HYGCMVDL G+
Sbjct: 560 DDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGR 619
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG LEEA ++I M +EPN +IW S LAAC+ +MA ++ ++++ PE G +
Sbjct: 620 AGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEK-IQVLAPERTGS-YV 677
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y +W +VR M + +RK G+S I
Sbjct: 678 LLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSI 713
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/336 (23%), Positives = 144/336 (42%), Gaps = 34/336 (10%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF +M + D ++ L +C +H I+K+G+ ++V SL+H
Sbjct: 121 LFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVH--- 177
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
Y++ G + AR F+ M RNV SW++MI Y
Sbjct: 178 ---------------------------FYAECGELDSARKVFDEMSERNVVSWTSMICGY 210
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+ LF M+ +E +TP+ +T+ V+S C+ L L G+ + FI + E
Sbjct: 211 ARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLED--LETGEKVYAFIRNSGIE 268
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
+N+ + + LVDMY KC + A +F+ N+ A+ +G + +AL +F +M
Sbjct: 269 VNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLM 328
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
+GV+P+ ++ +++C + G+ + E ++D++ K
Sbjct: 329 MDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRN-GFESWDNICNALIDMYMKCHR 387
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
+ A+ + M V+ W S +A E+ + D A
Sbjct: 388 QDTAFRIFDRMS-NKTVVTWNSIVAGYVENGEVDAA 422
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 131/290 (45%), Gaps = 44/290 (15%)
Query: 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY----VVTSFGFARKLFDELPE 78
LK+C + L + H + K G + V T L+ S FA+++F+
Sbjct: 39 LKNCKTIDELKMFHR---SLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSES 95
Query: 79 RNAV-TWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
+N++I+GY+ SG EA + LF
Sbjct: 96 YGTCFMYNSLIRGYASSGLCNEA-------------------------------ILLFLR 124
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
M+ N G++PD+ T LS C+ + G G HG IVK + + + LV YA+
Sbjct: 125 MM-NSGISPDKYTFPFGLSACAKSRAKG--NGIQIHGLIVKMGYAKDLFVQNSLVHFYAE 181
Query: 198 CGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL-FEMMQATGVKPNEMTFTG 256
CG L A VF+ M ERNV+SWT++ICG A R +++DA+ L F M++ V PN +T
Sbjct: 182 CGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVC 241
Query: 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
V++AC ++ G K + I +E +VD++ K ++ A
Sbjct: 242 VISACAKLEDLETGEKVYAFI-RNSGIEVNDLMVSALVDMYMKCNAIDVA 290
>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
Length = 602
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 130/394 (32%), Positives = 221/394 (56%), Gaps = 34/394 (8%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHF-NNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
F M R +V + F+ +LK+C + V H+ LK GF + YV+ +L+H Y
Sbjct: 113 FFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMY 172
Query: 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+ FG G + +AR+ F+RMP + +WSAMI
Sbjct: 173 --SCFG--------------------------GGFLGDARNVFDRMPKESAVTWSAMIGG 204
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ G ++LFREM +N G+ D++T+ VL+ + LG+ L + + F+ +
Sbjct: 205 YVRGGLSSDAVELFREMQAN-GVQADEVTVIGVLAAATDLGA--LELARWVRRFVEREGI 261
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ + L+D AKCG + A+ VFE M++R+V+SWT++I A G ++A+ +FE
Sbjct: 262 GKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEE 321
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M+ GV P+++ F GVLTAC H G+VDEG YF + EY +EP+I+HYGCMVD+FG+AG
Sbjct: 322 MKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAG 381
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
+E A E +RTM ++PN +IW S ++AC+ H + ++ E + + L P ++ + ++
Sbjct: 382 MVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEY-PAHEAN-YIML 439
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+++ + ++W+ +R+ M + ++K G S++
Sbjct: 440 SNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIV 473
>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
Length = 665
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 128/393 (32%), Positives = 227/393 (57%), Gaps = 6/393 (1%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV- 62
F M R S + + + + +L +C +L + +H +L+ G + V +L+ Y
Sbjct: 149 FVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQRVENALVDMYAE 208
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
A LF+ + R+ +W ++I G +SG V ARD F+ MP R+ +W+AMI Y
Sbjct: 209 CGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGY 268
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+ G + L+ FR M + + D+ T+ +V++ C+ LG+ L G+ A ++ + +
Sbjct: 269 VQVGRFRDALETFRYMQICK-VRADEFTMVSVVTACAQLGA--LETGEWARIYMGRLGIK 325
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
++ + L+DMY+KCG ++ AL VF+ M R+ +WTA+I G A G E+A+ +F M
Sbjct: 326 MDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRM 385
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
P+E+TF GVLTAC H GLVD+GR++F + E Y++ P + HYGC++D+ G+AG
Sbjct: 386 LRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGCLIDVLGRAGK 445
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362
L+EA + I M ++PN IWG+ LA+C+ + ++ E ++ L + P+N + L+
Sbjct: 446 LKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERLLEL-DPDNSTA-YILLS 503
Query: 363 DLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y + +W+ R+R++++ + ++K G S+I
Sbjct: 504 NMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMI 536
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 132/312 (42%), Gaps = 71/312 (22%)
Query: 38 LHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELP-----ERNAVTWNTMIKGYS 92
+H+H++K G S+ + A+SL+ Y G A + E V WN +I G++
Sbjct: 78 IHAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACLATGGGAPVMWNALISGHN 137
Query: 93 KSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIG 152
+SG FE + S+ M+ A A A +T
Sbjct: 138 RSGR-------FE----LSCCSFVDMVRASAMATA---------------------VTYV 165
Query: 153 AVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME 212
+VLS C LL+G H ++++ ++++ LVDMYA+CG + A ++FE M+
Sbjct: 166 SVLSACGK--GKDLLLGMQVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQ 223
Query: 213 -------------------------------ERNVISWTALICGSAHRGYSEDALSLFEM 241
ER+ I+WTA+I G G DAL F
Sbjct: 224 MRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRY 283
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
MQ V+ +E T V+TAC G ++ G ++ ++ ++ + ++D++ K G
Sbjct: 284 MQICKVRADEFTMVSVVTACAQLGALETG-EWARIYMGRLGIKMDVFVGNALIDMYSKCG 342
Query: 302 FLEEAYEVIRTM 313
+E A +V + M
Sbjct: 343 SIERALDVFKDM 354
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 96/238 (40%), Gaps = 41/238 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++ F M V +D F+++ ++ +C L ++ +LG V+V +L+
Sbjct: 278 LETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDM 337
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y S A +F ++ R+ TW +I G + +G EA D F RM LR +
Sbjct: 338 YSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRM-LRALQ------ 390
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
TPD++T VL+ C+H G L+ K F+
Sbjct: 391 -------------------------TPDEVTFVGVLTACTHAG----LVDKGREFFLSMT 421
Query: 180 E-WELNEQIA--TILVDMYAKCGFLKYALMVFELMEER-NVISWTALICGSAHRGYSE 233
E + ++ + L+D+ + G LK AL + M + N W L+ G SE
Sbjct: 422 EAYNISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSE 479
>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
Length = 610
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 124/329 (37%), Positives = 191/329 (58%), Gaps = 5/329 (1%)
Query: 66 FGFARKLFDELPER-NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLN 124
G A LF PE+ +A+ W M+ GY +GNV +A +FF MP+RN+ SW+A++A Y+
Sbjct: 155 MGAAEDLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVK 214
Query: 125 AGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN 184
D L++F+ M+ + + P+ T+ +VL GCS+L ++G G+ H + +K N
Sbjct: 215 NSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGF--GRQVHQWCMKLPLSRN 272
Query: 185 EQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQA 244
+ T L+ MY KCG L A VF+ M +++++W A+I G A G A+ LFE M+
Sbjct: 273 VTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMKD 332
Query: 245 TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLE 304
GV P+ +T VLTAC+HTGL D G + F+ + E Y +EP+I HY CMVDL +AG LE
Sbjct: 333 EGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQIDHYSCMVDLLCRAGLLE 392
Query: 305 EAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDL 364
A +I +M EP+ +G+ L AC+ +K + AE ++ + P+N G + + ++
Sbjct: 393 RAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQ-DPQN-AGAYVQLANI 450
Query: 365 YTMNEKWEGAERVRKLMLNQNVRKARGSS 393
Y + KW RVR+ M + V K G S
Sbjct: 451 YAVANKWADVSRVRRWMKDNAVVKTPGYS 479
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 139/291 (47%), Gaps = 22/291 (7%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR+LFD +P + V++NT++ + G++ AR F MP+++V SW+ M++ GA
Sbjct: 65 ARRLFDSIPHPDTVSYNTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGAS 124
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ +FR M ++ + M SG MG + F +N E + I
Sbjct: 125 EEAAAMFRIMPVRNAVSWNAMVAALACSG---------DMGAAEDLF--RNAPEKTDAIL 173
Query: 189 -TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE-MMQATG 246
T +V Y G ++ A+ F M RN++SW A++ G ++DAL +F+ M++ +
Sbjct: 174 WTAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSI 233
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
V+PN T + VL C + + GR+ + + L + ++ ++ K G L +A
Sbjct: 234 VQPNASTLSSVLLGCSNLSALGFGRQVHQWC-MKLPLSRNVTVGTSLLSMYCKCGDLNDA 292
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
+V M + +++ W + ++ +H QA+++ + D GV
Sbjct: 293 CKVFDEMSTK-DIVAWNAMISGYAQHGGG-------MQAIKLFEKMKDEGV 335
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 93/216 (43%), Gaps = 41/216 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILH-ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+++F M S+ + S L +L C++ + L +H +KL +V V TSLL
Sbjct: 222 LRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLS 281
Query: 60 EYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y A K+FDE+ ++ V WN MI GY++ G +A FE+M
Sbjct: 282 MYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEKM----------- 330
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF-IV 177
+EG+ PD +T+ AVL+ C H G L F +
Sbjct: 331 ---------------------KDEGVVPDWITLLAVLTACIHTG----LCDFGIQCFETM 365
Query: 178 KNEWELNEQIA--TILVDMYAKCGFLKYALMVFELM 211
+ +++ QI + +VD+ + G L+ A+ + M
Sbjct: 366 QEAYKIEPQIDHYSCMVDLLCRAGLLERAVNMIHSM 401
>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 130/397 (32%), Positives = 226/397 (56%), Gaps = 9/397 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ ++ M ++ + SF+ +LK+C +L + H+ +L VYV +++
Sbjct: 134 IAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDM 193
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
YV S ARK+FDE+PER+ ++W +I Y++ GN+ A + FE +P +++ +W+AM+
Sbjct: 194 YVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMV 253
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ L+ F M G+ D++T+ +S C+ LG+ A K+
Sbjct: 254 TGFAQNAKPQEALEYFDRM-EKSGIRADEVTVAGYISACAQLGASKY--ADRAVQIAQKS 310
Query: 180 EWELNEQ--IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
+ ++ I + L+DMY+KCG ++ A+ VF M +NV +++++I G A G +++AL
Sbjct: 311 GYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALH 370
Query: 238 LFE-MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
LF M+ T +KPN +TF G L AC H+GLVD+GR+ F + + + ++P HY CMVDL
Sbjct: 371 LFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDL 430
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
G+ G L+EA E+I+TM +EP+ +WG+ L AC+ H ++AE + + L ++P+ G
Sbjct: 431 LGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAE-IAAEHLFELEPDIIGN 489
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
+ L+ ++Y W G RVRKL+ + ++K S
Sbjct: 490 -YILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVS 525
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 134/347 (38%), Gaps = 67/347 (19%)
Query: 18 SILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELP 77
S++ L C NL I +H H+L+ G Y+ T L+ +T G +
Sbjct: 51 SLISKLDDCI---NLNQIKQIHGHVLRKGLDQSCYILTKLIR--TLTKLGVPMDPY---- 101
Query: 78 ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
AR E + RN W+A+I Y G +D + ++
Sbjct: 102 ----------------------ARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGC 139
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
M E +TP T A+L C + + L G+ H + + ++DMY K
Sbjct: 140 M-RKEEITPVSFTFSALLKACGTMKDLNL--GRQFHAQTFRLRGFCFVYVGNTMIDMYVK 196
Query: 198 CGFLKYALMVFELMEERNVIS-------------------------------WTALICGS 226
C + A VF+ M ER+VIS WTA++ G
Sbjct: 197 CESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGF 256
Query: 227 AHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE-YDLEP 285
A ++AL F+ M+ +G++ +E+T G ++AC G + ++ + Y
Sbjct: 257 AQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSD 316
Query: 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
+ ++D++ K G +EEA V +M NV + S + H
Sbjct: 317 HVVIGSALIDMYSKCGNVEEAVNVFMSMN-NKNVFTYSSMILGLATH 362
>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like, partial [Brachypodium distachyon]
Length = 745
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 132/320 (41%), Positives = 192/320 (60%), Gaps = 7/320 (2%)
Query: 76 LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF 135
L RN T ++ Y+K G + +AR F+RM R+V +WSAMI+ Y + L +F
Sbjct: 304 LRSRNLAT--ALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIF 361
Query: 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY 195
EM E + P+ +T+ +VLS C+ LG+ L GK H +I + + L + T LVD Y
Sbjct: 362 NEMQGTE-VNPNDVTMVSVLSACAVLGA--LETGKWVHSYIRRKDLPLTVILGTALVDFY 418
Query: 196 AKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT 255
AKCG +K A+ FE M RN +WTALI G A G S +AL LF M ++P ++TF
Sbjct: 419 AKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFI 478
Query: 256 GVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRL 315
GVL AC H LV+EGR++F + ++Y + PRI+HYGCMVDL G+AG ++EAY+ IR M +
Sbjct: 479 GVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPI 538
Query: 316 EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAE 375
EPN ++W + L+AC HK ++ E +KQ + + P + G + L+ + Y +W+ A
Sbjct: 539 EPNAVVWRALLSACTVHKNVEIGEEALKQIVPL-DPCHSGN-YILLSNTYASVGQWKNAA 596
Query: 376 RVRKLMLNQNVRKARGSSVI 395
VRK M + V K G S+I
Sbjct: 597 MVRKEMKEKGVEKIPGCSLI 616
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 158/328 (48%), Gaps = 38/328 (11%)
Query: 1 MQLFSQM-HRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+ LF +M +V D ++ + +KSC+ +L+V + ++ K GF+ +V SL+H
Sbjct: 155 LHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIH 214
Query: 60 EYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + G+V A F + ++ V +W+AMI
Sbjct: 215 MY------------------------------ASCGDVVAAHVLFHTVQVKGVIAWNAMI 244
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTP-DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
A Y+ G + +++F+ M+ E P D++T+ +V + C LG L G+ + +
Sbjct: 245 AGYVKNGDWKEVVEMFKGML--EVRAPFDEVTLLSVATACGRLGDANL--GQWIAEYAEE 300
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ +AT LVDMYAKCG L A +F+ M R+V++W+A+I G +AL++
Sbjct: 301 KGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAI 360
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F MQ T V PN++T VL+AC G ++ G+ I + DL + +VD +
Sbjct: 361 FNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRK-DLPLTVILGTALVDFYA 419
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
K G +++A + +M + N W + +
Sbjct: 420 KCGCIKDAVKAFESMPVR-NTWTWTALI 446
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 113/220 (51%), Gaps = 4/220 (1%)
Query: 108 PLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL 167
P R+ S++ +I ++L AG + L LF EM+ + ++PDQ T+ + CS + + +
Sbjct: 131 PPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVG 190
Query: 168 MGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSA 227
G A+ F K + +++ + L+ MYA CG + A ++F ++ + VI+W A+I G
Sbjct: 191 RGVQAYAF--KRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYV 248
Query: 228 HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRI 287
G ++ + +F+ M +E+T V TAC G + G+ + +E+ L R
Sbjct: 249 KNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSR- 307
Query: 288 QHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
+VD++ K G L++A + M +V+ W + ++
Sbjct: 308 NLATALVDMYAKCGELDKARRLFDRMHSR-DVVAWSAMIS 346
>gi|10178273|emb|CAC08331.1| putative protein [Arabidopsis thaliana]
Length = 1280
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 134/401 (33%), Positives = 233/401 (58%), Gaps = 12/401 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ ++ QM R + D + ++KS + +N + LH ++K G +++ +L+H
Sbjct: 839 ISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHM 898
Query: 61 YVVTSF---GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
Y SF ARKLFDE+P +N VTWN+++ Y+KSG+V AR F+ M R+V +WS+
Sbjct: 899 Y--GSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSS 956
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MI Y+ G Y+ L++F +M+ +++T+ +V+ C+HLG++ GK+ H +I+
Sbjct: 957 MIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALN--RGKTVHRYIL 1014
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVF--ELMEERNVISWTALICGSAHRGYSEDA 235
L + T L+DMYAKCG + A VF ++E + + W A+I G A G+ ++
Sbjct: 1015 DVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRES 1074
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
L LF M+ + + P+E+TF +L AC H GLV E +FK + +E EP+ +HY CMVD
Sbjct: 1075 LQLFHKMRESKIDPDEITFLCLLAACSHGGLVKEAWHFFKSL-KESGAEPKSEHYACMVD 1133
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
+ +AG +++A++ I M ++P + G+ L C H ++AE V K+ + + +P NDG
Sbjct: 1134 VLSRAGLVKDAHDFISEMPIKPTGSMLGALLNGCINHGNLELAETVGKKLIEL-QPHNDG 1192
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
+ + ++Y +N+++ A +R+ M + V+K G S++
Sbjct: 1193 R-YVGLANVYAINKQFRAARSMREAMEKKGVKKIAGHSILD 1232
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 21/184 (11%)
Query: 112 VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD----QMTIGAVLSGCSHLGSVGLL 167
VAS +A+ N G D GL+LFR++ +N G PD + I A+ C + + L
Sbjct: 580 VASTAAIDGLIKNEGV-DRGLELFRDICAN-GHCPDVIAYHVLIKALCKACRTMEADILF 637
Query: 168 MGKSAHGFIVKNEWELNEQIATI--LVDMYAKCGFLKYALMVFELM--EERN--VISWTA 221
+ G L +AT ++D + K G + L M +E+N VI++T+
Sbjct: 638 NEMVSKG--------LKPTVATYNSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTS 689
Query: 222 LICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY 281
LI G G +A+ + M+ PN +TF ++ G E YF+ + EE
Sbjct: 690 LIHGLCASGRPSEAIFRWNEMKGKDCYPNRITFMALIQGLCKCGWSGEALVYFREM-EEK 748
Query: 282 DLEP 285
++EP
Sbjct: 749 EMEP 752
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 84/195 (43%), Gaps = 24/195 (12%)
Query: 88 IKGYSKSGNVCEARDFFER-----MPLRNVASWSAMIAAYLNAGAYDPGLKLFR-EMISN 141
I+ +G V EA F+R + + N +++ ++ A + + L R + + +
Sbjct: 148 IRCLGNAGLVDEASSVFDRVREMGLCVPNAYTYNCLLEAISKSNSSSVELVEARLKEMRD 207
Query: 142 EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE-----WELNEQIATILVDMYA 196
G D+ T+ VL V GKS V NE W L+E I+TILV +
Sbjct: 208 CGFHFDKFTLTPVLQ-------VYCNTGKSERALSVFNEILSRGW-LDEHISTILVVSFC 259
Query: 197 KCGFLKYALMVFELMEER----NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEM 252
K G + A + E++EER N ++ LI G + A LFE M+ G+ +
Sbjct: 260 KWGQVDKAFELIEMLEERDIRLNYKTYCVLIHGFVKESRIDKAFQLFEKMRRMGMNADIA 319
Query: 253 TFTGVLTA-CVHTGL 266
+ ++ C H L
Sbjct: 320 LYDVLIGGLCKHKDL 334
Score = 41.2 bits (95), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 68/143 (47%), Gaps = 5/143 (3%)
Query: 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQH 289
G SE ALS+F + + G ++ V++ C G VD+ + +M+ EE D+ +
Sbjct: 228 GKSERALSVFNEILSRGWLDEHISTILVVSFC-KWGQVDKAFELIEML-EERDIRLNYKT 285
Query: 290 YGCMVDLFGKAGFLEEAYEVIRTMR---LEPNVIIWGSFLAACKEHKQFDMAERVIKQAL 346
Y ++ F K +++A+++ MR + ++ ++ + +HK +MA + +
Sbjct: 286 YCVLIHGFVKESRIDKAFQLFEKMRRMGMNADIALYDVLIGGLCKHKDLEMALSLYLEIK 345
Query: 347 RMVKPENDGGVFTLICDLYTMNE 369
R P + G + L+C +E
Sbjct: 346 RSGIPPDRGILGKLLCSFSEESE 368
>gi|317106614|dbj|BAJ53121.1| JHL07K02.11 [Jatropha curcas]
Length = 514
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 127/380 (33%), Positives = 221/380 (58%), Gaps = 21/380 (5%)
Query: 22 ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFDELPERN 80
+L++C ++ H+ I++ G+ ++ +A SL+ YV A ++ R
Sbjct: 17 LLEACKLSQDIRTATETHTRIIRFGYGTNSSIAASLISTYVNCNQLNLAYQVI-----RQ 71
Query: 81 AVTW-------NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
+W N +I + + G A+ F +MP R+V +W++MI Y+ G ++ L+
Sbjct: 72 VFSWTVSLAGLNLVIDSFMRIGEYEIAKKVFCKMPDRDVVTWNSMIGGYVRNGKFEEALR 131
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
F+ M+S+ + PD+ T +V++ C+ LG++ + H +V+ E+N +++ L+D
Sbjct: 132 SFQAMLSS-NVEPDKFTFASVITACARLGALN--HAQWLHDLMVQKRIEVNFILSSALID 188
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
MY+KCG ++ A VFE +E +V W +LI G A G + DA+ +F M+A V P+ +T
Sbjct: 189 MYSKCGRIETAKEVFESVERNDVSVWNSLINGLAVHGLALDAMMVFSKMEAENVLPDSLT 248
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
F G+L AC H GLV EGRKYF +++ Y ++P+++HYG MVDL G+AG L+EAY +I M
Sbjct: 249 FLGILKACSHCGLVKEGRKYFDLMENYYSIKPQLEHYGAMVDLLGRAGLLDEAYAMITAM 308
Query: 314 RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEG 373
+EP+VI+W L+AC+ H+ ++ E + + P++ G + L+ ++Y +W+
Sbjct: 309 PMEPDVIVWRILLSACRTHRNTELGEVAVAN---ISGPKS--GDYVLLSNIYCSQNRWDN 363
Query: 374 AERVRKLMLNQNVRKARGSS 393
A+ VR++M + VRK RG S
Sbjct: 364 AQEVREMMKEEGVRKRRGKS 383
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 107/254 (42%), Gaps = 39/254 (15%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++ F M +V D F+ ++ +C +LG ++H LH+
Sbjct: 130 LRSFQAMLSSNVEPDKFTFASVITACA----------------RLGALNH----AQWLHD 169
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+V + E N + + +I YSK G + A++ FE + +V+ W+++I
Sbjct: 170 LMV----------QKRIEVNFILSSALIDMYSKCGRIETAKEVFESVERNDVSVWNSLIN 219
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
G + +F +M E + PD +T +L CSH GL+ + +++N
Sbjct: 220 GLAVHGLALDAMMVFSKM-EAENVLPDSLTFLGILKACSH---CGLVKEGRKYFDLMENY 275
Query: 181 WELNEQIA--TILVDMYAKCGFLKYAL-MVFELMEERNVISWTALICGSAHRGYSEDALS 237
+ + Q+ +VD+ + G L A M+ + E +VI W L+ SA R + L
Sbjct: 276 YSIKPQLEHYGAMVDLLGRAGLLDEAYAMITAMPMEPDVIVWRILL--SACRTHRNTELG 333
Query: 238 LFEMMQATGVKPNE 251
+ +G K +
Sbjct: 334 EVAVANISGPKSGD 347
>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 722
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 135/400 (33%), Positives = 226/400 (56%), Gaps = 12/400 (3%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILK--LGFISHVYVATSLLHE 60
LF +M + D F+ + + C+ N V +H+ + K S++ + ++++
Sbjct: 199 LFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDM 258
Query: 61 YVVTSF-GFARKLFDEL-PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y A ++F + ++A W++M+ GY++ G + AR F M R+V SW+AM
Sbjct: 259 YAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAM 318
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSA-HGFIV 177
I+ Y AG L+LF+EM G+ PD++T+ AVLS C+ LG+ L GK H +I
Sbjct: 319 ISGYSQAGQCSEALELFKEM-EALGIKPDEVTLVAVLSACARLGAFDL--GKRLYHQYIE 375
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--RNVISWTALICGSAHRGYSEDA 235
+ N + ++DMYAKCG + AL +F + + + + ++I G A G E A
Sbjct: 376 NGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETA 435
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
+++F + +TG+KP+E+TF GVL AC H+GL++EG+K F+ + Y ++P+++HYGCMVD
Sbjct: 436 ITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVD 495
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
L G+ G LEEAY++++ M E N +IW + L+AC+ H + E ++ L M G
Sbjct: 496 LLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEM--EAQHG 553
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ ++ +WE A +VRK+M + +RK G S I
Sbjct: 554 ARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYI 593
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 114/387 (29%), Positives = 177/387 (45%), Gaps = 75/387 (19%)
Query: 5 SQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VV 63
S + + P ++F+ +L SC ++L H +HSHI+K GF S ++V +L+H Y V
Sbjct: 100 SMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVF 159
Query: 64 TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL 123
+ AR LFDE R+ V++NTMIKGY++
Sbjct: 160 GNLNLARTLFDESLVRDLVSYNTMIKGYAE------------------------------ 189
Query: 124 NAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWEL 183
+ L LF EM N G+ PD+ T A+ S CS L + GK H + KN +
Sbjct: 190 -VNQPESALCLFGEM-QNSGILPDEFTFVALFSVCSVLNEPNV--GKQIHAQVYKNLRSI 245
Query: 184 NEQI--ATILVDMYAKCGFLKYALMVFEL------------------------------- 210
+ I + +VDMYAKCG + A VF
Sbjct: 246 DSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFN 305
Query: 211 -MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
M ER+VISWTA+I G + G +AL LF+ M+A G+KP+E+T VL+AC G D
Sbjct: 306 HMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDL 365
Query: 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNV---IIWGSFL 326
G++ + E ++D++ K G ++ A E+ R R+ N+ ++ S +
Sbjct: 366 GKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFR--RVGKNMKTGFVFNSMI 423
Query: 327 AACKEHKQFDMAERVIKQALRM-VKPE 352
A +H + A V ++ + +KP+
Sbjct: 424 AGLAQHGLGETAITVFRELISTGLKPD 450
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 139/331 (41%), Gaps = 45/331 (13%)
Query: 18 SILHILKSCTHFNN------LTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARK 71
S L +L+SC F T+++ LH I IS + SLL +R
Sbjct: 11 SSLCLLESCKSFKQGLQIHAQTIVNGLHHQIFS---ISRLISFFSLLGSK--DGLDHSRL 65
Query: 72 LFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPG 131
LF ++ N WNTMI+GYS+S N EA
Sbjct: 66 LFSQIDCPNLFMWNTMIRGYSRSDNPREA------------------------------- 94
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
+ L+ MI+ P+ T +L+ C+ L S L G H I+K+ +E + + L
Sbjct: 95 IVLYMSMIAKGIAPPNNFTFPFLLNSCARLSS--LEPGHEVHSHIIKHGFESDLFVRNAL 152
Query: 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE 251
+ +Y+ G L A +F+ R+++S+ +I G A E AL LF MQ +G+ P+E
Sbjct: 153 IHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDE 212
Query: 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEY-DLEPRIQHYGCMVDLFGKAGFLEEAYEVI 310
TF + + C + G++ + + ++ I +VD++ K G + A V
Sbjct: 213 FTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVF 272
Query: 311 RTMRLEPNVIIWGSFLAACKEHKQFDMAERV 341
TM + W S + + ++A ++
Sbjct: 273 STMGTSKSAAAWSSMVCGYARCGEINVARKL 303
>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
Length = 1740
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 133/429 (31%), Positives = 228/429 (53%), Gaps = 43/429 (10%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY- 61
+F M + D ++ +LK+ + +L V +H+ ++++G +V+V L+ Y
Sbjct: 1113 VFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYG 1172
Query: 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSG-------------------------- 95
A ++ DZ+P R+ V+WN+++ G +++G
Sbjct: 1173 KCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMAS 1232
Query: 96 -----------NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
NV ++ F ++ +++ SW+ MIA Y+N + +F +M + +
Sbjct: 1233 LLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQM-EDHAV 1291
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
PD ++I +VL C L + LL+G+ H ++V+ + N + L+DMYAKCG L+YA
Sbjct: 1292 DPDAISIASVLPACGDLSA--LLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYA 1349
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
VF+ M+ R+V+SWT++I G DA+SLF MQ G+ P+ + F VL+AC H
Sbjct: 1350 REVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHA 1409
Query: 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324
GL+DEGR YFK++ EE + PRI+H+ CMVDL G+AG ++EAY I+ M +EPN +WG+
Sbjct: 1410 GLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGA 1469
Query: 325 FLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384
L+AC+ + + Q ++ PE G + L+ ++Y +WE VR +M +
Sbjct: 1470 LLSACRVYSNMIIGLLAADQLFQLC-PEQ-SGYYVLLSNIYAKAGRWEDVTTVRSIMKTK 1527
Query: 385 NVRKARGSS 393
++K G S
Sbjct: 1528 GIKKMPGVS 1536
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 127/267 (47%), Gaps = 15/267 (5%)
Query: 87 MIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
+++ Y+ G R F+ +P +NV ++ MI +Y+N Y L +F+ M + G+ P
Sbjct: 1066 LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNM-AGHGIDP 1124
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
D T VL S GS L +G H +V+ +LN + L+ MY KCG L A
Sbjct: 1125 DHYTYPCVLKASS--GSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACR 1182
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
V + M R+V+SW +L+ G A G +DAL + + M+ G+KP+ T +L A +T L
Sbjct: 1183 VLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCL 1242
Query: 267 VDEG---RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR---LEPNVI 320
+ + K+ ++ + + M+ ++ EA ++ M ++P+ I
Sbjct: 1243 DNVSFVKEMFMKLANKS------LVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAI 1296
Query: 321 IWGSFLAACKEHKQFDMAERVIKQALR 347
S L AC + + R+ + +R
Sbjct: 1297 SIASVLPACGDLSALLLGRRIHEYVVR 1323
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 144/327 (44%), Gaps = 27/327 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F QM +V D+ SI +L +C + L + +H ++++ ++ + +L+
Sbjct: 1280 VDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDM 1339
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL----RNVASW 115
Y +AR++FD++ R+ V+W +MI Y +G +A F RM + ++
Sbjct: 1340 YAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAF 1399
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
++++A +AG D G F+ M + P I + LG G + A+GF
Sbjct: 1400 VSVLSACSHAGLLDEGRYYFKLMTEECKIVP---RIEHFVCMVDLLGRAGQV--DEAYGF 1454
Query: 176 IVKNEWELNEQIATILVD---MYAK--CGFLKYALMVFELMEERNVISWTALICGSAHRG 230
I + E NE++ L+ +Y+ G L A +F+L E++ + L A G
Sbjct: 1455 IKQMPMEPNERVWGALLSACRVYSNMIIGLLA-ADQLFQLCPEQSGY-YVLLSNIYAKAG 1512
Query: 231 YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV-DEGRKYFKMIDEEYDLEPRIQH 289
ED ++ +M+ G+K L VHT L D+ K I EE D+
Sbjct: 1513 RWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDV------ 1566
Query: 290 YGCMVDLFGKAGFLEEAYEVIRTMRLE 316
+V +AG++ E + + E
Sbjct: 1567 ---LVGKMKEAGYVPETDSALHDVEEE 1590
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 25/181 (13%)
Query: 184 NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQ 243
N + L+ YA CG +F+ + ++NV+ + +I + DAL +F+ M
Sbjct: 1059 NPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMA 1118
Query: 244 ATGVKPNEMTFTGVLTAC-----------VHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC 292
G+ P+ T+ VL A +H +V G L+ +
Sbjct: 1119 GHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVG------------LDLNVFVGNG 1166
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ-ALRMVKP 351
++ ++GK G L EA V+ M +V+ W S +A C + QFD A V K+ L +KP
Sbjct: 1167 LISMYGKCGCLVEACRVLDZMPCR-DVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKP 1225
Query: 352 E 352
+
Sbjct: 1226 D 1226
>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
Length = 580
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 134/398 (33%), Positives = 235/398 (59%), Gaps = 10/398 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHI--LKLGFISHVYVATSLL 58
M+LF +M + D F+IL +L SC N+ +H + K S++ + +LL
Sbjct: 149 MRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVHGWMERRKPTISSNLILGNALL 208
Query: 59 HEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
YV A + F L E++ V+WN ++ G +K G + +AR FF +MP R++ SW++
Sbjct: 209 DMYVKCQKVELALRTFGALKEKDIVSWNMIVAGCAKVGELEQARLFFYQMPCRDIVSWNS 268
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
++ Y G + +L +M+ E + PD +T+ +++S + G+ L G+ AHG+++
Sbjct: 269 LVTGYACRGDFASVKELIVDMVM-EKVIPDTVTMISLVSAATESGA--LDQGRWAHGWVI 325
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
+ + +L+ + + L+DMY KCG ++ A VF+ + +++V WT +I G A GY AL
Sbjct: 326 RMQIKLDAFLGSALIDMYCKCGSIERASRVFKEINKKDVTVWTTMITGLAFHGYGSKALE 385
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LF MQ V P+++TF VL+AC H+GLVD+G K F + +Y +EP ++HYGC+VDL
Sbjct: 386 LFSEMQED-VSPDDVTFVSVLSACSHSGLVDQGIKVFSSM-TDYGIEPGVEHYGCLVDLL 443
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
++G L EA ++I M ++P+ IWG+ L AC+ ++AE ++ L + PE +GG
Sbjct: 444 ARSGRLSEAKDIIDQMPMKPSRSIWGAMLNACQAQGDVELAEIASRELLNL-DPEEEGG- 501
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+TL+ ++Y + +W ++++R+ M ++ V+K G S +
Sbjct: 502 YTLLSNIYAASGRWSYSKKIRETMESRGVKKTAGCSSV 539
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 141/303 (46%), Gaps = 40/303 (13%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
NT+IK Y ++G V A FE+MP ++ S++ MI Y G ++LF EM+ GL
Sbjct: 102 NTLIKVYLENGLVRLAHQVFEKMPSPDIVSFNVMIVGYAKKGFGLEAMRLFHEMV-GLGL 160
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ--IATILVDMYAKCGFLK 202
PD+ TI +L C LG+V GK+ HG++ + + ++ + L+DMY KC ++
Sbjct: 161 EPDEFTILGLLVSCGQLGNVKF--GKAVHGWMERRKPTISSNLILGNALLDMYVKCQKVE 218
Query: 203 YALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQ----------ATG------ 246
AL F ++E++++SW ++ G A G E A F M TG
Sbjct: 219 LALRTFGALKEKDIVSWNMIVAGCAKVGELEQARLFFYQMPCRDIVSWNSLVTGYACRGD 278
Query: 247 ---------------VKPNEMTFTGVLTACVHTGLVDEGR-KYFKMIDEEYDLEPRIQHY 290
V P+ +T +++A +G +D+GR + +I + L+ +
Sbjct: 279 FASVKELIVDMVMEKVIPDTVTMISLVSAATESGALDQGRWAHGWVIRMQIKLDAFLG-- 336
Query: 291 GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVK 350
++D++ K G +E A V + + + +V +W + + H A + + V
Sbjct: 337 SALIDMYCKCGSIERASRVFKEIN-KKDVTVWTTMITGLAFHGYGSKALELFSEMQEDVS 395
Query: 351 PEN 353
P++
Sbjct: 396 PDD 398
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 112/247 (45%), Gaps = 27/247 (10%)
Query: 108 PLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV--- 164
P N+ ++ +I+A+ + + L+ ++S+ G PD+ T+ +L + + V
Sbjct: 28 PNPNLFIYNTLISAFSSLKKIE-SFYLYNVLLSS-GECPDKQTLLYLLQAVNFISQVKQI 85
Query: 165 ---GLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTA 221
++ G + G++ L+ +Y + G ++ A VFE M +++S+
Sbjct: 86 HCQAIVTGLFSFGYL-----------QNTLIKVYLENGLVRLAHQVFEKMPSPDIVSFNV 134
Query: 222 LICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY 281
+I G A +G+ +A+ LF M G++P+E T G+L +C G V G+ ++
Sbjct: 135 MIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVHGWMERR- 193
Query: 282 DLEPRIQHY----GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDM 337
+P I ++D++ K +E A ++ E +++ W +A C + + +
Sbjct: 194 --KPTISSNLILGNALLDMYVKCQKVELALRTFGALK-EKDIVSWNMIVAGCAKVGELEQ 250
Query: 338 AERVIKQ 344
A Q
Sbjct: 251 ARLFFYQ 257
>gi|225430506|ref|XP_002283354.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 517
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 146/457 (31%), Positives = 226/457 (49%), Gaps = 71/457 (15%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV 63
+ +M R +D+F+ +LK+ + ++ + LH +K GF H +V T+LL Y
Sbjct: 42 YVEMKRVGFDADNFTFPVLLKAASSLSSCCIGFALHGQAMKTGFSGHCFVGTALLDMY-- 99
Query: 64 TSFGF----------------------------------ARKLFDELPERNAVTWNTMIK 89
++FG A KLFD +P ++ ++N MI
Sbjct: 100 SAFGAIDHATKVFEEMGVKDVVVWNSMLAAYASCGQMDNAMKLFDNMPLKDLASFNIMIS 159
Query: 90 GYSKSGNVCEARDFFER-------------------------------MPLRNVASWSAM 118
GY+K G AR F+R MP +NV +W+ M
Sbjct: 160 GYAKIGKKAAARSIFDRIHAKDIVSWNSMILACTNVGDMGNARNLFDVMPKKNVITWNTM 219
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I+ YL+A Y + LF EM + D +T+ VLS C+HLG +G G H +
Sbjct: 220 ISGYLHAQLYAEAVDLFDEMKAGNH-EADHLTVTLVLSACAHLGWLG--KGTEMHVYAQD 276
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ + +AT L+DMYAKCG ++ +L VF + +++ W A+I G A GY A+ L
Sbjct: 277 HRLASSPHVATSLIDMYAKCGTIQRSLEVFYKSQVKDIYCWNAIISGLALHGYGHAAVKL 336
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
+ M+ GV+P+E+TF G+L+AC H LV EG + F +++E+ L P+++HYGCMVDL G
Sbjct: 337 LDKMRDNGVRPDEITFIGLLSACSHRSLVQEGCRLFDCMEKEFGLPPKLEHYGCMVDLLG 396
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AGFL+ A+++I+ M EP I G+ L AC H+ + E+VI +D G F
Sbjct: 397 RAGFLDPAFQLIKAMPFEPGESILGALLGACVIHQDLETGEKVINLITSKAHHVSD-GEF 455
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ +LY +W+ A R R+ M + K G S I
Sbjct: 456 MMFVNLYASCGQWKEANRWRERMNESGIAKTAGGSTI 492
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/280 (20%), Positives = 106/280 (37%), Gaps = 72/280 (25%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF +M + +D ++ +L +C H L +H + S +VATSL
Sbjct: 233 VDLFDEMKAGNHEADHLTVTLVLSACAHLGWLGKGTEMHVYAQDHRLASSPHVATSL--- 289
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
I Y+K G + + + F + ++++ W+A+I+
Sbjct: 290 ---------------------------IDMYAKCGTIQRSLEVFYKSQVKDIYCWNAIIS 322
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF-IVKN 179
G +KL +M N G+ PD++T +LS CSH L+ + F ++
Sbjct: 323 GLALHGYGHAAVKLLDKMRDN-GVRPDEITFIGLLSACSHRS----LVQEGCRLFDCMEK 377
Query: 180 EWELNEQIA--TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
E+ L ++ +VD+ + GFL A
Sbjct: 378 EFGLPPKLEHYGCMVDLLGRAGFLDPA--------------------------------- 404
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI 277
F++++A +P E +L ACV ++ G K +I
Sbjct: 405 -FQLIKAMPFEPGESILGALLGACVIHQDLETGEKVINLI 443
>gi|218189919|gb|EEC72346.1| hypothetical protein OsI_05579 [Oryza sativa Indica Group]
Length = 545
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 136/396 (34%), Positives = 221/396 (55%), Gaps = 6/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +FS D F+ + L + + + +H I + G S + V +L+
Sbjct: 104 ISVFSHAIASGHRPDGFAAVGALSASGGLGDQRIGSVVHGLIFRCGLDSELVVCNALVDM 163
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y F AR +FD + ++ VTW +M+ GY K V A FF +MP+++ SW+A+I
Sbjct: 164 YCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALI 223
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
++ L+LF +M+ EG P+ +TI VLS C+ +G++ L G++ HG+ K+
Sbjct: 224 TGHVQDKQPIQALELFGKMLL-EGHRPNHITIVGVLSACADIGALDL--GRAIHGYGSKS 280
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
N + L+DMYAK G + A VFE ++ ++ +WT +I +G A+ LF
Sbjct: 281 NATTNIIVTNALMDMYAKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELF 340
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M +G+ PN +TF VL+AC H GL+ EGR+ F + E Y ++PR++HYGCMVDL G+
Sbjct: 341 WDMLRSGILPNSVTFVSVLSACSHAGLIQEGRELFDKMREVYHIDPRLEHYGCMVDLLGR 400
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
G LEEA +I M +EP+++IW S L+AC H +AE K+ ++ + D GV+
Sbjct: 401 GGLLEEAEALIDHMDVEPDIVIWRSLLSACLAHGNDRLAEIAGKEIIK--REPGDDGVYV 458
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y ++ +W+ A +RK ML++ + K G S I
Sbjct: 459 LLWNMYALSNRWKEALDMRKQMLSRKIYKKPGCSWI 494
>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g46790, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 136/396 (34%), Positives = 222/396 (56%), Gaps = 39/396 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTH----FNNLTVIHHLHSHILKLGFISHVYVATS 56
+ L+ +M+R V SD F+ ++LK+C N+L +H+H+ + G+ SHVY+ T
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMT- 221
Query: 57 LLHEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
T++ Y++ G V A F MP+RNV SWS
Sbjct: 222 -----------------------------TLVDMYARFGCVDYASYVFGGMPVRNVVSWS 252
Query: 117 AMIAAYLNAGAYDPGLKLFREMI-SNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
AMIA Y G L+ FREM+ + +P+ +T+ +VL C+ L + L GK HG+
Sbjct: 253 AMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAA--LEQGKLIHGY 310
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
I++ + + + LV MY +CG L+ VF+ M +R+V+SW +LI GY + A
Sbjct: 311 ILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKA 370
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
+ +FE M A G P +TF VL AC H GLV+EG++ F+ + ++ ++P+I+HY CMVD
Sbjct: 371 IQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVD 430
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
L G+A L+EA ++++ MR EP +WGS L +C+ H ++AER ++ L ++P+N G
Sbjct: 431 LLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRR-LFALEPKNAG 489
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARG 391
+ L+ D+Y + W+ +RV+KL+ ++ ++K G
Sbjct: 490 N-YVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPG 524
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 99/349 (28%), Positives = 154/349 (44%), Gaps = 38/349 (10%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
Q + ++S PS L IL C H ++L+ +H HIL G ++AT L
Sbjct: 64 QAIRVLSQESSPSQQTYELLIL-CCGHRSSLSDALRVHRHILDNGSDQDPFLATKL---- 118
Query: 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
I YS G+V AR F++ R + W+A+ A
Sbjct: 119 --------------------------IGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRA 152
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGC--SHLGSVGLLMGKSAHGFIVKN 179
AG + L L+ +M + G+ D+ T VL C S L+ GK H + +
Sbjct: 153 LTLAGHGEEVLGLYWKM-NRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRR 211
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + I T LVDMYA+ G + YA VF M RNV+SW+A+I A G + +AL F
Sbjct: 212 GYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTF 271
Query: 240 -EMMQAT-GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
EMM+ T PN +T VL AC +++G+ I L+ + +V ++
Sbjct: 272 REMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRR-GLDSILPVISALVTMY 330
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQAL 346
G+ G LE V M + +V+ W S +++ H A ++ ++ L
Sbjct: 331 GRCGKLEVGQRVFDRMH-DRDVVSWNSLISSYGVHGYGKKAIQIFEEML 378
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 116/274 (42%), Gaps = 23/274 (8%)
Query: 102 DFFERMPLRNVASWSAMIAAYLNAGA--------------YDPGLKLFREMISNEGLTPD 147
+F R PL+ + A+ +++GA + LK ++S E +P
Sbjct: 18 NFLPRSPLKPPSCSVALNNPSISSGAGAKISNNQLIQSLCKEGKLKQAIRVLSQES-SPS 76
Query: 148 QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMV 207
Q T ++ C H S+ + H I+ N + + +AT L+ MY+ G + YA V
Sbjct: 77 QQTYELLILCCGHRSSLSDAL--RVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKV 134
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
F+ +R + W AL G+ E+ L L+ M GV+ + T+T VL ACV +
Sbjct: 135 FDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECT 194
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCM---VDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324
K I H M VD++ + G ++ A V M + NV+ W +
Sbjct: 195 VNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVR-NVVSWSA 253
Query: 325 FLAA-CKEHKQFDMAERVIKQALRMVKPENDGGV 357
+A K K F+ A R ++ +R K + V
Sbjct: 254 MIACYAKNGKAFE-ALRTFREMMRETKDSSPNSV 286
>gi|224141427|ref|XP_002324074.1| predicted protein [Populus trichocarpa]
gi|222867076|gb|EEF04207.1| predicted protein [Populus trichocarpa]
Length = 636
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 134/395 (33%), Positives = 224/395 (56%), Gaps = 7/395 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
F +M ++ V D +++ + CT +L + ++K+G V V ++++ YV
Sbjct: 109 FFKEMRKEGVVLDDVAMISVFVLCTRVEDLGMGRQAQGCLVKMGLGLGVKVCNAIMNMYV 168
Query: 63 VTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
R++F E+ ERN V+W+T+++G K V R F+ MP RN W+ MIA
Sbjct: 169 KCGLVEEVRRVFCEMNERNVVSWSTLLEGVVKWEGVENGRVVFDEMPERNEVGWTIMIAG 228
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN-E 180
Y+ G G L EM+ L + +T+ ++LS C+ G V LMG+ H + +K
Sbjct: 229 YVGNGFSREGFLLLDEMVLRFRLGLNFVTLSSILSACAQSGDV--LMGRWVHVYALKGMG 286
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
E++ + T LVDMYAKCG + A VF+ + +RNV++W A++ G A G + L +F
Sbjct: 287 REMHIMVGTALVDMYAKCGPIDMAFKVFKYLPKRNVVAWNAMLGGLAMHGRGKFVLDIFP 346
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M KP+++TF VL+AC H+GLVD+G YF+ ++ EY P+I+HY CMVD+ G+A
Sbjct: 347 KMIEEA-KPDDLTFMAVLSACSHSGLVDQGYHYFRSLESEYGTTPKIEHYACMVDILGRA 405
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G LEEA +I+ M + PN ++ GS L +C H + + ER++++ ++M + V L
Sbjct: 406 GHLEEAVMLIKKMPMCPNEVVLGSLLGSCNAHGKLQLGERILQELIQMDGHNTEYHV--L 463
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y + K + A +R+++ ++ +RK G S I
Sbjct: 464 LSNMYVLEGKQDKANSLRQILKSKGIRKVPGVSSI 498
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 89/379 (23%), Positives = 155/379 (40%), Gaps = 69/379 (18%)
Query: 10 QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFA 69
QS+P+ S+L +SC ++L+ LH+ IL G S
Sbjct: 12 QSLPARFRSLL---RSCARNSSLSTGKKLHAVILTSGLAS-------------------- 48
Query: 70 RKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL--RNVASWSAMIAAYLNAGA 127
N N + Y+ G AR F ++P ++V W+ ++ + + G
Sbjct: 49 -------SSPNTFLLNALHHLYASCGVTSSARHLFYQIPRSHKDVTDWTTLLTSLVQHGT 101
Query: 128 Y-DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ 186
G F+EM EG+ D + + +V C+ + +G MG+ A G +VK L +
Sbjct: 102 KPSEGFFFFKEM-RKEGVVLDDVAMISVFVLCTRVEDLG--MGRQAQGCLVKMGLGLGVK 158
Query: 187 IATILVDMYAKCGFLKYALMVFELMEERNVISWTAL------------------------ 222
+ +++MY KCG ++ VF M ERNV+SW+ L
Sbjct: 159 VCNAIMNMYVKCGLVEEVRRVFCEMNERNVVSWSTLLEGVVKWEGVENGRVVFDEMPERN 218
Query: 223 -------ICGSAHRGYSEDA-LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF 274
I G G+S + L L EM+ + N +T + +L+AC +G V GR
Sbjct: 219 EVGWTIMIAGYVGNGFSREGFLLLDEMVLRFRLGLNFVTLSSILSACAQSGDVLMGRWVH 278
Query: 275 KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
+ E I +VD++ K G ++ A++V + + + NV+ W + L H +
Sbjct: 279 VYALKGMGREMHIMVGTALVDMYAKCGPIDMAFKVFKYLP-KRNVVAWNAMLGGLAMHGR 337
Query: 335 FDMAERVIKQALRMVKPEN 353
+ + + KP++
Sbjct: 338 GKFVLDIFPKMIEEAKPDD 356
>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
[Vitis vinifera]
Length = 836
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 134/396 (33%), Positives = 222/396 (56%), Gaps = 7/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ + +M +Q D ++L + + +L H ++++ G + ++
Sbjct: 318 LAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDM 377
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y+ A ++FD + + V+WN++ G+ ++G+V A + F ++P RN W+ MI
Sbjct: 378 YMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMI 437
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ + ++ ++LFREM EG+ D++T+ + S C +LG+ L K H +I KN
Sbjct: 438 SGLVQKSLFEDAIELFREM-QGEGIKADRVTMMGIASACGYLGAPEL--AKWVHTYIEKN 494
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ ++ T LVDM+A+CG + A+ VF M ER+V +WTA I A G E A LF
Sbjct: 495 GIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLF 554
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M GVKP+ + F VLTAC H G V++G F ++ E++ + P+I+HYGCMVDL G+
Sbjct: 555 NQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLM-EDHGISPQIEHYGCMVDLLGR 613
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG L EA+++I++M +EPN ++WGS LAAC+ HK +MA ++ + + P+ GV
Sbjct: 614 AGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAER-INELAPQR-AGVHV 671
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y KW RVR + + VRK GSS +
Sbjct: 672 LLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSV 707
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 93/385 (24%), Positives = 168/385 (43%), Gaps = 69/385 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF +M + S +++ ++ +C +L + + ++I +LG + + +L+
Sbjct: 217 VSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDM 276
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y+ + A++LFDE +RN V +NT++ Y++ G EA
Sbjct: 277 YMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREA------------------- 317
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
L + EM+ +G PD++T+ + +S + L V L GK HG++++N
Sbjct: 318 ------------LAILDEML-QQGPRPDRVTMLSAISASAQL--VDLFYGKVCHGYVIRN 362
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELME--------------------------- 212
E + I +++DMY KCG + A VF+LM
Sbjct: 363 GLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVF 422
Query: 213 ----ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
ERN + W +I G + EDA+ LF MQ G+K + +T G+ +AC + G
Sbjct: 423 NQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLG-AP 481
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
E K+ E+ + ++ +VD+F + G + A +V M E +V W + +
Sbjct: 482 ELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMT-ERDVSAWTAAIGT 540
Query: 329 CKEHKQFDMAERVIKQAL-RMVKPE 352
+ A + Q L + VKP+
Sbjct: 541 MAMEGNGEGATGLFNQMLIQGVKPD 565
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 137/314 (43%), Gaps = 48/314 (15%)
Query: 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV----VTSFGFARKLF----- 73
L+ C N L LH I K G T L++ S +ARK F
Sbjct: 32 LRCCKTLNQLK---QLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKE 88
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
D + N++I+GYS +G EA + RM +
Sbjct: 89 DVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVL----------------------- 125
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
G+TP+ T VLSGC+ + + G HG +VK E + I L+
Sbjct: 126 ---------GVTPNHYTFPFVLSGCTKIAA--FCEGIQVHGSVVKMGLEEDVFIQNCLIH 174
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
YA+CG + + VFE M ERNV+SWT+LICG A ++A+SLF M G++P+ +T
Sbjct: 175 FYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVT 234
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
V++AC +D G + I E L+ +VD++ K G ++ A +
Sbjct: 235 MVCVISACAKLRDLDMGERVCAYIG-ELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDEC 293
Query: 314 RLEPNVIIWGSFLA 327
++ N++++ + L+
Sbjct: 294 -VDRNLVLYNTILS 306
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/346 (23%), Positives = 147/346 (42%), Gaps = 43/346 (12%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ +M V + ++ +L CT +H ++K+G V++ L+H
Sbjct: 118 LYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIH--- 174
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
Y++ G++ FE M RNV SW+++I Y
Sbjct: 175 ---------------------------FYAECGHMDHGHKVFEGMSERNVVSWTSLICGY 207
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+ LF EM+ G+ P +T+ V+S C+ L L MG+ +I + +
Sbjct: 208 ARGDRPKEAVSLFFEMVE-AGIRPSSVTMVCVISACAKLRD--LDMGERVCAYIGELGLK 264
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
LN+ + LVDMY KCG + A +F+ +RN++ + ++ A +G + +AL++ + M
Sbjct: 265 LNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEM 324
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHY----GCMVDLFG 298
G +P+ +T ++A LVD ++ + Y + ++ + ++D++
Sbjct: 325 LQQGPRPDRVTMLSAISASAQ--LVD---LFYGKVCHGYVIRNGLEGWDSIGNVIIDMYM 379
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
K G E A V M V+ W S A + + A V Q
Sbjct: 380 KCGKPEMACRVFDLMS-NKTVVSWNSLTAGFIRNGDVESAWEVFNQ 424
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 86/202 (42%), Gaps = 15/202 (7%)
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGF---LKYALMVFELMEERNVISWTAL-ICG 225
K H I KN + T LV+ A+ L YA FEL +E +V S AL +
Sbjct: 42 KQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKE-DVRSDDALFMLN 100
Query: 226 SAHRGYS-----EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE 280
S RGYS +A+ L+ M GV PN TF VL+ C EG + + +
Sbjct: 101 SLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSV-VK 159
Query: 281 YDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAER 340
LE + C++ + + G ++ ++V M E NV+ W S + + + D +
Sbjct: 160 MGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMS-ERNVVSWTSLICG---YARGDRPKE 215
Query: 341 VIKQALRMVKPENDGGVFTLIC 362
+ MV+ T++C
Sbjct: 216 AVSLFFEMVEAGIRPSSVTMVC 237
>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
Length = 679
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 144/431 (33%), Positives = 226/431 (52%), Gaps = 41/431 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ F M + + D + +LKS +N V LH ILK G +V SL+
Sbjct: 125 ISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLEFDSFVRVSLVDM 184
Query: 61 YV-VTSFGFARKLFDE-----------------------------------LPERNAVTW 84
YV V G A K+FDE +P+++ +W
Sbjct: 185 YVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKATELFDSMPKKDTGSW 244
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
N++I G+ K G++ A++ F +MP +NV SW+ M+ + G + L+ F M+ EG
Sbjct: 245 NSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLE-EGA 303
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
P+ TI + LS C+ +G+ L G H ++ N ++LN I T LVDMYAKCG +++A
Sbjct: 304 RPNDYTIVSALSACAKIGA--LDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHA 361
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
VF +E+ ++ W+ +I G A G+ AL FE M+ TG KP+ + F VL AC H+
Sbjct: 362 EKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHS 421
Query: 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324
G V+EG K+F + Y +EP ++HY +VD+ G+AG L+EA + IR M + P+ ++WG+
Sbjct: 422 GQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPDFVVWGA 481
Query: 325 FLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384
AC+ HK +MAE K+ L++ +P++ G + + + Y +W+ AERVR M +
Sbjct: 482 LFCACRTHKNVEMAELASKKLLQL-EPKHPGS-YVFLSNAYASVGRWDDAERVRVSMRDH 539
Query: 385 NVRKARGSSVI 395
K G S I
Sbjct: 540 GAHKDPGWSFI 550
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 128/330 (38%), Gaps = 58/330 (17%)
Query: 27 THF-------NNLTVIHHLHSHILKLGFISHVYVATSLLHE-YVVTSFGFARKLFDELPE 78
THF N+ + +H + + S V T + + S +A +F
Sbjct: 43 THFIDLIHASNSTHKLRQIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFEL 102
Query: 79 RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM 138
+N+ +N +I+G +++ + FF M W
Sbjct: 103 KNSYLFNALIRGLAENSRFESSISFFVLM-----LKWK---------------------- 135
Query: 139 ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198
++PD++T VL + L + G+ G++ H I+K E + + LVDMY K
Sbjct: 136 -----ISPDRLTFPFVLKSAAALSNGGV--GRALHCGILKFGLEFDSFVRVSLVDMYVKV 188
Query: 199 GFLKYALMVF----ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTF 254
L AL VF E ++ +V+ W LI G G A LF+ M K + ++
Sbjct: 189 EELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKATELFDSMP----KKDTGSW 244
Query: 255 TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR 314
++ + G + ++ F + E+ + + MV+ F + G E+A E M
Sbjct: 245 NSLINGFMKMGDMGRAKELFVKMPEK-----NVVSWTTMVNGFSQNGDPEKALETFFCML 299
Query: 315 LE---PNVIIWGSFLAACKEHKQFDMAERV 341
E PN S L+AC + D R+
Sbjct: 300 EEGARPNDYTIVSALSACAKIGALDAGLRI 329
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 82/199 (41%), Gaps = 27/199 (13%)
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR 229
+ HG + + + ++ T + + + YA+ +F+ E +N + ALI G A
Sbjct: 59 RQIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFELKNSYLFNALIRGLAEN 118
Query: 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTA-----------CVHTGLVDEGRKYFKMID 278
E ++S F +M + P+ +TF VL + +H G++ G ++ +
Sbjct: 119 SRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLEFDSFVR 178
Query: 279 EEY-DLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDM 337
D+ +++ G + +F +E+ E ++ +V+IW + H M
Sbjct: 179 VSLVDMYVKVEELGSALKVF------DESPESVKN----GSVLIWNVLI-----HGYCRM 223
Query: 338 AERVIKQALRMVKPENDGG 356
+ V L P+ D G
Sbjct: 224 GDLVKATELFDSMPKKDTG 242
>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
Length = 505
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 137/397 (34%), Positives = 215/397 (54%), Gaps = 37/397 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +S M R V S IL+SC + H I+K+GF + + T LL
Sbjct: 15 LGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLL-- 72
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVAS--WSAM 118
Y+K G V EAR+ F+ M RN S W+ M
Sbjct: 73 ----------------------------DFYAKHGYVEEARNLFDNMTERNSNSVTWNTM 104
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I+AY+ G + + +F++M S E + P ++T+ ++LS C+HLG+ L MG+ HG+I
Sbjct: 105 ISAYVQCGEFGTAISMFQQMQS-ENVKPTEVTMVSLLSACAHLGA--LDMGEWIHGYIRT 161
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+++ + L+DMY KCG L+ A+ VF + +N+ W ++I G G E+A++
Sbjct: 162 KRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAA 221
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F +M+ G+KP+ +TF G+L+ C H+GL+ G++YF + Y LEP ++HYGCMVDL G
Sbjct: 222 FIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLG 281
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG+L+EA E+IR M ++PN ++ GS L AC+ HK + E+V +Q L + DGG +
Sbjct: 282 RAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLEL--DPCDGGNY 339
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ +LY +W+ RKLM+ + V K G S I
Sbjct: 340 VFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSI 376
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 105/213 (49%), Gaps = 7/213 (3%)
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MI L +G L + M+ N+ L P + + +L C+ G L G++ H I+
Sbjct: 1 MIRVSLESGVCPDFLGFYSGMLRNDVL-PSKTSFSLILRSCAISGEAQL--GEAFHCQIM 57
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER--NVISWTALICGSAHRGYSEDA 235
K +E + + T L+D YAK G+++ A +F+ M ER N ++W +I G A
Sbjct: 58 KMGFEYDMILQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTA 117
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
+S+F+ MQ+ VKP E+T +L+AC H G +D G I + L+ + ++D
Sbjct: 118 ISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKR-LKIDVVLGNALID 176
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
++ K G LE A +V + N+ W S +
Sbjct: 177 MYCKCGALEAAIDVFHGLS-RKNIFCWNSIIVG 208
>gi|242082594|ref|XP_002441722.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
gi|241942415|gb|EES15560.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
Length = 528
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 135/396 (34%), Positives = 223/396 (56%), Gaps = 6/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF+++ D F+++ L + + + V +H I +LG V V +L+
Sbjct: 98 ISLFARVVAAGHRPDGFAVVGALSASSGAGDQVVGRAVHGLIFRLGLDGEVVVGNALIDM 157
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y F A K+FD + ++ VTW +M+ GY K V A FF+++P+R+V +W+A+I
Sbjct: 158 YSQCGKFESAVKVFDRMSLKDEVTWGSMLHGYIKCAGVDSALSFFDQVPVRSVVAWTALI 217
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
++ L+LF M+ EG P +TI VLS C+ +G++ L G+ HG+ K
Sbjct: 218 TGHVQGRQPVRALELFGRMVL-EGHRPTHVTIVGVLSACADIGALDL--GRVIHGYGSKC 274
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
LN ++ L+DMYAK G ++ A VF+ ++ ++ +WT +I +G + AL LF
Sbjct: 275 NASLNIIVSNALMDMYAKSGHIEMAFSVFQEVQSKDSFTWTTMISCCTVQGDGKKALELF 334
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+ M GV PN +TF VL+AC H+GL++EG + F + + Y ++P ++HYGCM+DL G+
Sbjct: 335 QDMLRAGVVPNSVTFVSVLSACSHSGLIEEGIELFDRMRQLYKIDPLLEHYGCMIDLLGR 394
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
G LEEA +I M +EP+++IW S L+AC +AE K+ ++ + D GV+
Sbjct: 395 GGLLEEAEALIADMNVEPDIVIWRSLLSACLVRGNNRLAEIAGKEIVK--REPGDDGVYV 452
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y + KW A +R+ ML+ + K G S I
Sbjct: 453 LLWNMYASSNKWREAREMRQQMLSLKIFKKPGCSWI 488
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 86/362 (23%), Positives = 142/362 (39%), Gaps = 76/362 (20%)
Query: 21 HILKSCTHFNNLTVIHHLHSHILKLGFISHVY-VATSLLHEYVVTSFGF---ARKLFDEL 76
H+L C L IH L + G H V+ + Y FG ARKLFDE+
Sbjct: 19 HLLAQCKKLRELQRIHAL---AIAHGLHPHQQSVSCKIFRCY--ADFGRVADARKLFDEI 73
Query: 77 PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFR 136
P + +++ +++ + + N EA F R ++AA
Sbjct: 74 PNPDLISFTSLMSLHLQLDNQREAISLFAR-----------VVAA--------------- 107
Query: 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA 196
G PD + LS S G+ ++G++ HG I + + + L+DMY+
Sbjct: 108 ------GHRPDGFAVVGALSASS--GAGDQVVGRAVHGLIFRLGLDGEVVVGNALIDMYS 159
Query: 197 KCGFLKYALMVFELME-------------------------------ERNVISWTALICG 225
+CG + A+ VF+ M R+V++WTALI G
Sbjct: 160 QCGKFESAVKVFDRMSLKDEVTWGSMLHGYIKCAGVDSALSFFDQVPVRSVVAWTALITG 219
Query: 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP 285
AL LF M G +P +T GVL+AC G +D GR + +
Sbjct: 220 HVQGRQPVRALELFGRMVLEGHRPTHVTIVGVLSACADIGALDLGR-VIHGYGSKCNASL 278
Query: 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQA 345
I ++D++ K+G +E A+ V + ++ + W + ++ C A + +
Sbjct: 279 NIIVSNALMDMYAKSGHIEMAFSVFQEVQ-SKDSFTWTTMISCCTVQGDGKKALELFQDM 337
Query: 346 LR 347
LR
Sbjct: 338 LR 339
>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 135/399 (33%), Positives = 229/399 (57%), Gaps = 16/399 (4%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+SQ+ Q + S + K+ + LH ++KLG + ++ ++++ Y
Sbjct: 119 LYSQIQPQYLTYPS-----VFKAYAQLGHAHYGAQLHGRVVKLGLQNDQFICNTIIYMYA 173
Query: 63 VTSF-GFARKLFD----ELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
AR++FD EL + + V N+MI GY+K G + E+R+ F+ M R SW++
Sbjct: 174 NGGLMSEARRVFDGKKLELYDHDVVAINSMIMGYAKCGEIDESRNLFDDMITRTSVSWNS 233
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MI+ Y+ G L+LF +M EG + T+ ++L+ C+HLG+ L GK H +I
Sbjct: 234 MISGYVRNGKLMEALELFNKM-QVEGFEVSEFTMVSLLNACAHLGA--LQHGKWVHDYIK 290
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
+N +ELN + T ++DMY KCG ++ A+ VFE R + W ++I G A G+ +A
Sbjct: 291 RNHFELNVIVVTAIIDMYCKCGSVENAVEVFETCPRRGLSCWNSIIIGLAMNGHEREAFE 350
Query: 238 LFEMMQATGV-KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
F ++++ + KP+ ++F GVLTAC H G +++ R YF+++ +Y++EP I+HY C+VD+
Sbjct: 351 FFSKLESSKLLKPDSVSFIGVLTACKHLGAINKARDYFELMMNKYEIEPSIKHYTCIVDV 410
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
G+AG LEEA E+I+ M L+P+ IIWGS L++C++H+ +A R ++ + P + G
Sbjct: 411 LGQAGLLEEAEELIKGMPLKPDAIIWGSLLSSCRKHRNVQIARRAAQRVYEL-NPSDASG 469
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ +++ + K+E A R LM K G S I
Sbjct: 470 -YVLMSNVHAASNKFEEAIEQRLLMKENLTEKEPGCSSI 507
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 95/372 (25%), Positives = 164/372 (44%), Gaps = 30/372 (8%)
Query: 30 NNLTVIHHLHS---HILKLGFISHVYVATSLLHEYVVTS--FGFARKLFDELPERNAVTW 84
N+ T I+H H HI+K G + +T L S +A KLF +P N +W
Sbjct: 36 NHCTTINHFHQIYPHIIKTGLTLNPIASTRALTFCASPSGNINYAYKLFVRMPNPNLYSW 95
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVA----SWSAMIAAYLNAGAYDPGLKLFREMIS 140
NT+I+ +S+S A F M + ++ ++ AY G G +L ++
Sbjct: 96 NTIIRAFSRSSTPQFAISLFVDMLYSQIQPQYLTYPSVFKAYAQLGHAHYGAQLHGRVVK 155
Query: 141 NEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATI--LVDMYAKC 198
GL DQ ++ ++ + G LM ++ F K + + I ++ YAKC
Sbjct: 156 -LGLQNDQFICNTII----YMYANGGLMSEARRVFDGKKLELYDHDVVAINSMIMGYAKC 210
Query: 199 GFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL 258
G + + +F+ M R +SW ++I G G +AL LF MQ G + +E T +L
Sbjct: 211 GEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELFNKMQVEGFEVSEFTMVSLL 270
Query: 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPN 318
AC H G + G+ I + E + ++D++ K G +E A EV T
Sbjct: 271 NACAHLGALQHGKWVHDYIKRNH-FELNVIVVTAIIDMYCKCGSVENAVEVFETCP-RRG 328
Query: 319 VIIWGSFLAACK----EHKQFDMAERVIKQALRMVKPENDG--GVFTLICDLYTMNEKWE 372
+ W S + E + F+ ++ ++ +++KP++ GV T L +N+
Sbjct: 329 LSCWNSIIIGLAMNGHEREAFEFFSKL--ESSKLLKPDSVSFIGVLTACKHLGAINK--- 383
Query: 373 GAERVRKLMLNQ 384
A +LM+N+
Sbjct: 384 -ARDYFELMMNK 394
>gi|147825156|emb|CAN75501.1| hypothetical protein VITISV_034156 [Vitis vinifera]
Length = 532
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 140/401 (34%), Positives = 225/401 (56%), Gaps = 9/401 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F +M R V D + + K+ + L + +H I K G ++A SL+H
Sbjct: 90 VSVFVKMLRFGVCPDHLTYPFVAKAVARLSELRLALAVHCRIAKEGLWFDRFIANSLIHM 149
Query: 61 Y-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y G ARK+FDE+ RN+V+WN M+ GY+K G++ A F MP R+V SWS+MI
Sbjct: 150 YGSCGDIGSARKVFDEMLIRNSVSWNAMLDGYAKCGDLDSAHQVFXSMPDRDVVSWSSMI 209
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ G Y L +F M G + +T+ +VL C+HLG+ L G+ H ++V N
Sbjct: 210 DGCVKGGEYGVALAIFERM-RVVGPKANXVTMVSVLCACAHLGA--LEXGRXMHQYMVDN 266
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFE--LMEERNVISWTALICGSAHRGYSEDALS 237
+ T L+DMYAKCG ++ A+ VF M++ +V+ W +I G A G ++L
Sbjct: 267 TMRFTLVLRTSLMDMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLVXESLE 326
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LF+ MQ G+ P+E+T+ + +AC H GLV E +FK + ++ + P+ +HY CMVD+
Sbjct: 327 LFKEMQVLGIVPDEITYLCLFSACAHGGLVHEAWHFFKSLGKQ-GMVPKSEHYACMVDVL 385
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
+AG L EAY+ I M +EP + G+ L C H++FD+AERV ++ + + +P++DG
Sbjct: 386 SRAGQLAEAYDFIAQMPMEPTASMLGALLNGCMNHRRFDLAERVGRKLIEL-EPDHDGRY 444
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSL 398
L ++Y + W+ A +R+ M + V+K+ G S + L
Sbjct: 445 IGL-SNVYAGVKLWDNARMMREAMERRGVKKSPGFSFVEVL 484
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 86/323 (26%), Positives = 151/323 (46%), Gaps = 29/323 (8%)
Query: 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDELPER 79
LK+C +++ + + + G H A+ LL ++S+G + ++F ++P
Sbjct: 12 LKNC---RSMSEFKQIQAFFITSGLSQHHPFASRLLSFSAISSWGDIDHSYRIFLQIPSP 68
Query: 80 NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM- 138
WN++I+G+SK N + F +M V A A L+L +
Sbjct: 69 TISNWNSIIRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYPFVAKAVARLSELRLALAVH 128
Query: 139 --ISNEGLTPDQMTIGAVL---SGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
I+ EGL D+ +++ C +GS + + +++N N ++D
Sbjct: 129 CRIAKEGLWFDRFIANSLIHMYGSCGDIGSARKVFDE----MLIRNSVSWNA-----MLD 179
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
YAKCG L A VF M +R+V+SW+++I G G AL++FE M+ G K N +T
Sbjct: 180 GYAKCGDLDSAHQVFXSMPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRVVGPKANXVT 239
Query: 254 FTGVLTACVHTGLVDEGRKYFK-MIDE--EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI 310
VL AC H G ++ GR + M+D + L R ++D++ K G +EEA V
Sbjct: 240 MVSVLCACAHLGALEXGRXMHQYMVDNTMRFTLVLRTS----LMDMYAKCGAIEEAIAVF 295
Query: 311 RTMRL-EPNVIIWGSFLAACKEH 332
R + + + +V++W + + H
Sbjct: 296 RGVPMDQTDVLMWNTIIGGLATH 318
>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 119/327 (36%), Positives = 201/327 (61%), Gaps = 6/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR+LFD++P RN +WNTM+ GY++ GN+ +A+ F+ MP R+ SW+AMI+ Y +G
Sbjct: 327 ARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQS 386
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ L LF +M + G+ ++ + LS C+ + + L +GK HG +VK ++
Sbjct: 387 EEALHLFIKMKRDGGIL-NRSALACALSSCAEIAA--LELGKQLHGRLVKAGFQTGYIAG 443
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+ MY KCG ++ A VFE + E++++SW +I G A G+ ++AL+LFE M+ T +K
Sbjct: 444 NALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IK 502
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+++T GVL+AC HTGLVD+G +YF + + Y + +HY CM+DL G+AG L+EA
Sbjct: 503 PDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALN 562
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
++++M P+ WG+ L A + H ++ E+ ++ M +P+N G++ L+ +LY +
Sbjct: 563 LMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEM-EPDN-SGMYVLLSNLYAAS 620
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
+W +R M ++ V+K G S +
Sbjct: 621 GRWREVREMRSKMRDKGVKKVPGYSWV 647
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/336 (23%), Positives = 157/336 (46%), Gaps = 57/336 (16%)
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
F ARK+F+++P+R+ ++WN M+ GY K+GN+ AR F +MP ++V SW+AM++ +
Sbjct: 107 FDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQN 166
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV------------------GLL 167
G + K+F +M L ++++ +LS G + L
Sbjct: 167 GFVEEARKIFDQM-----LVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCL 221
Query: 168 MGKSAHGFIVKNEWE----------LNEQIA-TILVDMYAKCGFLKYALMVFELMEERNV 216
MG G++ K + + ++I+ I++ YA+ G L A +FE + R+V
Sbjct: 222 MG----GYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDV 277
Query: 217 ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKM 276
+WTA++ G G ++A +FE M + NE+++ ++ V + +++ R+ F
Sbjct: 278 FAWTAMVSGFVQNGMLDEATRIFEEMP----EKNEVSWNAMIAGYVQSQQIEKARELFDQ 333
Query: 277 IDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFD 336
+ + MV + + G +++A + M + + I W + ++ + Q +
Sbjct: 334 MPSR-----NTSSWNTMVTGYAQCGNIDQAKILFDEMP-QRDCISWAAMISGYAQSGQSE 387
Query: 337 MAERVIKQALRMVKPENDGGVFT---LICDLYTMNE 369
A + +K + DGG+ L C L + E
Sbjct: 388 EALHLF------IKMKRDGGILNRSALACALSSCAE 417
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 130/276 (47%), Gaps = 21/276 (7%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A +F+ + R+ VT+N MI GY + AR FE+MP R++ SW+ M++ Y+ G
Sbjct: 79 ALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNL 138
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
LF +M D ++ A+LSG + G V K +VKNE N
Sbjct: 139 SAARALFNQMPEK-----DVVSWNAMLSGFAQNGFVEEAR-KIFDQMLVKNEISWNG--- 189
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+ Y + G ++ A +F+ + ++SW L+ G + +DA SLF+ M
Sbjct: 190 --LLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVR--- 244
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
+++++ ++T GL+ E R+ F EE + + + MV F + G L+EA
Sbjct: 245 -DKISWNIMITGYAQNGLLSEARRLF----EELPIRD-VFAWTAMVSGFVQNGMLDEATR 298
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
+ M E N + W + +A + +Q + A + Q
Sbjct: 299 IFEEMP-EKNEVSWNAMIAGYVQSQQIEKARELFDQ 333
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 102/248 (41%), Gaps = 42/248 (16%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF +M R + ++ L SC L + LH ++K GF + +LL
Sbjct: 390 LHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAM 449
Query: 61 Y-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y S A +F+++ E++ V+WNTMI GY++ G EA FE M +
Sbjct: 450 YGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMT--------- 500
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ PD +T+ VLS CSH G V G + +N
Sbjct: 501 ------------------------IKPDDVTLVGVLSACSHTGLVD--KGMEYFNSMYQN 534
Query: 180 EW-ELNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSE---- 233
N + T ++D+ + G L AL + + M + +W AL+ S G +E
Sbjct: 535 YGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEK 594
Query: 234 DALSLFEM 241
A +FEM
Sbjct: 595 AAEKVFEM 602
>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 602
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 130/394 (32%), Positives = 220/394 (55%), Gaps = 34/394 (8%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHF-NNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
F M R +V + F+ +LK+C + V H+ LK GF + YV+ +L+H Y
Sbjct: 113 FFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMY 172
Query: 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+ FG G + +AR+ F+RMP + +WSAMI
Sbjct: 173 --SCFG--------------------------GGFLGDARNVFDRMPKESAVTWSAMIGG 204
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ G + LFREM +N G+ D++T+ VL+ + LG+ L + + F+ +
Sbjct: 205 YVRGGLSSDAVDLFREMQAN-GVQADEVTVIGVLAAATDLGA--LELARWVRRFVEREGI 261
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ + L+D AKCG + A+ VFE M++R+V+SWT++I A G ++A+ +FE
Sbjct: 262 GKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEE 321
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M+ GV P+++ F GVLTAC H G+VDEG YF + EY +EP+I+HYGCMVD+FG+AG
Sbjct: 322 MKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAG 381
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
+E A E +RTM ++PN +IW S ++AC+ H + ++ E + + L P ++ + ++
Sbjct: 382 MVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEY-PAHEAN-YIML 439
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+++ + ++W+ +R+ M + ++K G S++
Sbjct: 440 SNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIV 473
>gi|345505222|gb|AEN99835.1| chlororespiratory reduction 4, partial [Lepidium sativum]
Length = 597
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 119/327 (36%), Positives = 201/327 (61%), Gaps = 4/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A+ LFD +P R+ +TW TMI GY+K G + +A+ F+++P R+V ++++M+A Y+ +
Sbjct: 255 AKDLFDVMPRRDVITWATMIDGYAKLGFIHQAKTLFDQIPHRDVVAYNSMMAGYVQNKYH 314
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L+LF +M L+PD+ T+ VLS + LG + M H +IVK ++ + ++
Sbjct: 315 MEALELFIKMEKESHLSPDETTLVIVLSAIAQLGRLSKAM--DMHFYIVKKQFFIGGKLG 372
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+DMY+KCG +++A++VF+ +E +N+ W A+I G A G A + ++ +K
Sbjct: 373 VALIDMYSKCGSIQHAMLVFKGLENKNIDHWNAIIGGLAIHGLGGPAFDMLLQIERLSIK 432
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+++TF GVL AC H+GLV EG F+++ ++ +EPR+QHYGCMVD+ ++G +E A
Sbjct: 433 PDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKI 492
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+I M +EPN +IW +FL AC HK+F+M E V K + ++ + + L+ ++Y
Sbjct: 493 LIEKMPIEPNDVIWRTFLTACSHHKEFEMGELVAKHLI--LQAGYNPSSYVLLSNMYASC 550
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
W+ RVR +M + ++K G S I
Sbjct: 551 GMWKDVRRVRTMMKERKIQKIPGCSWI 577
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/364 (25%), Positives = 182/364 (50%), Gaps = 33/364 (9%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF M V D FS+ +LK+C+ + +H + K G S +++ L+ Y+
Sbjct: 92 LFCLMLENGVSVDKFSLSLVLKACSRLGFVKAGMXIHGFLRKTGLWSDLFLQNCLIGLYL 151
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP--LRNVASWSAMI 119
G++R++FD +P+R++V++N+MI GY K G + AR+ F+ MP ++N+ SW+ +I
Sbjct: 152 KCGCLGYSRQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMPKEMKNLISWNCLI 211
Query: 120 AAYLN-AGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI-- 176
+ Y + + KLF EM + ++ + M G V HG I
Sbjct: 212 SGYAQTSDGVNIASKLFSEMPEKDLISWNSMIDGYV-----------------KHGRIED 254
Query: 177 VKNEWELNEQIATI----LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
K+ +++ + I ++D YAK GF+ A +F+ + R+V+++ +++ G Y
Sbjct: 255 AKDLFDVMPRRDVITWATMIDGYAKLGFIHQAKTLFDQIPHRDVVAYNSMMAGYVQNKYH 314
Query: 233 EDALSLF-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHY 290
+AL LF +M + + + P+E T VL+A G + + +F ++ +++ + ++
Sbjct: 315 MEALELFIKMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHFYIVKKQFFIGGKLG-- 372
Query: 291 GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-V 349
++D++ K G ++ A V + + N+ W + + H A ++ Q R+ +
Sbjct: 373 VALIDMYSKCGSIQHAMLVFKGLE-NKNIDHWNAIIGGLAIHGLGGPAFDMLLQIERLSI 431
Query: 350 KPEN 353
KP++
Sbjct: 432 KPDD 435
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 105/217 (48%), Gaps = 20/217 (9%)
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
W+A+I ++ + L LF M+ N G++ D+ ++ VL CS LG V G HG
Sbjct: 73 WNAVIKSHSHGTDPRRSLFLFCLMLEN-GVSVDKFSLSLVLKACSRLGFVK--AGMXIHG 129
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
F+ K + + L+ +Y KCG L Y+ VF+ M +R+ +S+ ++I G G E
Sbjct: 130 FLRKTGLWSDLFLQNCLIGLYLKCGCLGYSRQVFDRMPQRDSVSYNSMIDGYVKCGLIES 189
Query: 235 ALSLFEMMQATGVKPNEM----TFTGVLTACVHTGL-VDEGRKYFKMIDEEYDLEPRIQH 289
A LF++M P EM ++ +++ T V+ K F + E+ +
Sbjct: 190 ARELFDLM------PKEMKNLISWNCLISGYAQTSDGVNIASKLFSEMPEK-----DLIS 238
Query: 290 YGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
+ M+D + K G +E+A ++ M +VI W + +
Sbjct: 239 WNSMIDGYVKHGRIEDAKDLFDVMP-RRDVITWATMI 274
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 89/224 (39%), Gaps = 37/224 (16%)
Query: 195 YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTF 254
+A+C F ++ + E + W A+I +H +L LF +M GV ++ +
Sbjct: 49 FARCVFEEHHVYSLPYGETEDPFLWNAVIKSHSHGTDPRRSLFLFCLMLENGVSVDKFSL 108
Query: 255 TGVLTACVHTGLVDEG-------RK----------------YFK-----MIDEEYDLEPR 286
+ VL AC G V G RK Y K + +D P+
Sbjct: 109 SLVLKACSRLGFVKAGMXIHGFLRKTGLWSDLFLQNCLIGLYLKCGCLGYSRQVFDRMPQ 168
Query: 287 IQ--HYGCMVDLFGKAGFLEEAYEVIRTMRLE-PNVIIWGSFLAA-CKEHKQFDMAERVI 342
Y M+D + K G +E A E+ M E N+I W ++ + ++A ++
Sbjct: 169 RDSVSYNSMIDGYVKCGLIESARELFDLMPKEMKNLISWNCLISGYAQTSDGVNIASKLF 228
Query: 343 KQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386
+ PE D + + D Y + + E A+ + +M ++V
Sbjct: 229 SEM-----PEKDLISWNSMIDGYVKHGRIEDAKDLFDVMPRRDV 267
>gi|310656753|gb|ADP02188.1| PPR domain-containing protein [Triticum aestivum]
Length = 788
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 138/394 (35%), Positives = 222/394 (56%), Gaps = 7/394 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L+SQM + +L +C +L +H+ LK+G ++V+V+ SL+
Sbjct: 364 VKLYSQMLADGCRPNISCFSSVLSACASLEDLRGGARIHARSLKMGSSTNVFVSCSLIDM 423
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y G A+ +FD LP++N V WN+++ GYS +G + EA F++MP RN+ASW+ +I
Sbjct: 424 YCKCNKCGDAQTIFDTLPQKNIVCWNSLVSGYSYNGKMVEAMYLFKKMPARNLASWNTII 483
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y + LK F M+++ G P ++T +VL C++L S L+ GK AH +K
Sbjct: 484 SGYAQNRQFVDALKSFNAMLAS-GQVPGEITFSSVLLACANLCS--LVTGKMAHAKTIKL 540
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
E + I T L DMYAK G L+ + +F M ERN ++WTA+I G A G++E+++ LF
Sbjct: 541 GIEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERNDVTWTAMIQGLAENGFAEESILLF 600
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
E M ATG+ PNE TF +L AC H GLV++ YF + + + P+ +HY CMVD+ +
Sbjct: 601 EDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFDKM-QALGISPKEKHYTCMVDVLAR 659
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG L EA ++ + W + L+AC ++ ++AER K+ + K G +
Sbjct: 660 AGRLAEAEALLMKTPSKSEANSWAALLSACNTYRNEEIAERAAKRLHELAKDNTAG--YV 717
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
L+ ++Y +W+ A R+R LM ++K G S
Sbjct: 718 LLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCS 751
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 140/291 (48%), Gaps = 37/291 (12%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR+LFD +P+R V++ TM+ K G V EA + +E+ P +VA ++A I+ ++ +
Sbjct: 168 ARRLFDGMPDRTVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATISGFVRNELH 227
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL--------------------- 167
L +FR+M+S + P+ +TI ++ C G GL
Sbjct: 228 HNALGVFRKMLSCR-VRPNGITIVCMIKACVGAGEFGLALSIVGLAIKSNFFESSIEVQN 286
Query: 168 --------MGKSAHGFIVKNEWELNEQIA-TILVDMYAKCGFLKYALMVFELMEERNVIS 218
MG +A V +E ++ + ++ T L+D+Y++ G L A V + M ERN +S
Sbjct: 287 SLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAMPERNEVS 346
Query: 219 WTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMID 278
W LI RG + +A+ L+ M A G +PN F+ VL+AC +++ R ++
Sbjct: 347 WGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACAS---LEDLRGGARIHA 403
Query: 279 EEYDLEPRIQHY-GC-MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
+ + C ++D++ K +A + T+ + N++ W S ++
Sbjct: 404 RSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTLP-QKNIVCWNSLVS 453
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 1/154 (0%)
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
T +VD K G + A+ ++E +V +TA I G +AL +F M + V+
Sbjct: 184 TTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATISGFVRNELHHNALGVFRKMLSCRVR 243
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
PN +T ++ ACV G + + E I+ ++ L+ + G A +
Sbjct: 244 PNGITIVCMIKACVGAGEFGLALSIVGLAIKSNFFESSIEVQNSLITLYLRMGDAAAARK 303
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVI 342
V M ++ +V+ W + L E D A RV+
Sbjct: 304 VFDEMDVK-DVVSWTALLDVYSESGDLDGARRVL 336
>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
Length = 818
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 132/399 (33%), Positives = 222/399 (55%), Gaps = 8/399 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L+ ++ + + + IL +C+ L +HSHIL+ G S V VAT+L++
Sbjct: 293 LELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNM 352
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSG---NVCEARDFFERMPLRNVASWS 116
Y S ARK+F+ + R+AV W+T+I Y+ +G + +AR F+R+ R+ W+
Sbjct: 353 YAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWN 412
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
AMI Y+ G +K+FREM GL PD +T AVL C+ LG + + K+ H I
Sbjct: 413 AMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEV--KALHAQI 470
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
++E E N + L++MYA+CG L+ A +F +E+ V+SWTA++ + G +AL
Sbjct: 471 SESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEAL 530
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
LF+ M GVKP+++T+T +L C H G +++G +YF + E + L P H+ MVDL
Sbjct: 531 DLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFAAMVDL 590
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
G++G L +A E++ +M EP+ + W +FL AC+ H + ++ E ++ + +
Sbjct: 591 LGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYEL--DPSSTA 648
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ + ++Y + WE VRK M + ++K G S I
Sbjct: 649 PYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFI 687
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 100/389 (25%), Positives = 177/389 (45%), Gaps = 72/389 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+++F +M P +S + ++++ + L +H+ I+ GF S + VAT+L
Sbjct: 193 LRIFKEMKCDMKP-NSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATAL--- 248
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
I Y K G+ EAR+ F++M R++ SW+ MI
Sbjct: 249 ---------------------------INMYGKCGSSHEAREVFDKMKKRDMVSWNVMIG 281
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y+ G + L+L++++ EG + T ++L CS + + L G+ H I++
Sbjct: 282 CYVQNGDFHEALELYQKL-DMEGFKRTKATFVSILGACSSVKA--LAQGRLVHSHILERG 338
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED------ 234
+ +AT LV+MYAKCG L+ A VF M+ R+ ++W+ LI A GY +D
Sbjct: 339 LDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARK 398
Query: 235 ----------------------------ALSLF-EMMQATGVKPNEMTFTGVLTACVHTG 265
A+ +F EM A G+KP+ +TF VL AC G
Sbjct: 399 VFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLG 458
Query: 266 LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSF 325
+ E + I E +LE + +++++ + G LEEA + + E V+ W +
Sbjct: 459 RLSEVKALHAQISES-ELESNVVVTNTLINMYARCGSLEEAERLFAAAK-EKTVVSWTAM 516
Query: 326 LAACKEHKQFDMAERVIKQ-ALRMVKPEN 353
+AA ++ ++ A + ++ L VKP++
Sbjct: 517 VAAFSQYGRYAEALDLFQEMDLEGVKPDD 545
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 128/244 (52%), Gaps = 6/244 (2%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
N ++ Y++ G+V +A+ F+ + R+ SW+A+I A+ +G + L++F+EM + +
Sbjct: 146 NALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCD--M 203
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
P+ T V+SG S L G+ H IV N ++ + +AT L++MY KCG A
Sbjct: 204 KPNSTTYINVISGFST--PEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEA 261
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
VF+ M++R+++SW +I G +AL L++ + G K + TF +L AC
Sbjct: 262 REVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSV 321
Query: 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324
+ +GR I E L+ + +V+++ K G LEEA +V M+ + + W +
Sbjct: 322 KALAQGRLVHSHILER-GLDSEVAVATALVNMYAKCGSLEEARKVFNAMK-NRDAVAWST 379
Query: 325 FLAA 328
+ A
Sbjct: 380 LIGA 383
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 153/345 (44%), Gaps = 58/345 (16%)
Query: 7 MHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTS 65
M RQ D+ + L +L SC+ ++ LH I F V +L+ Y S
Sbjct: 1 MDRQP---DNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDS 57
Query: 66 FGFARKLFDELP--ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL 123
AR +F+ + +RN V+WN MI Y+++G+ EA + RM L
Sbjct: 58 LVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNL-------------- 103
Query: 124 NAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWEL 183
+GL D +T +VL CS L G+ H + + +
Sbjct: 104 ------------------QGLGTDHVTFVSVLGACSSLA-----QGREIHNRVFYSGLDS 140
Query: 184 NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQ 243
+ +A LV MYA+ G + A +F+ ++ R+ SW A+I + G AL +F+ M+
Sbjct: 141 FQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMK 200
Query: 244 ATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
+KPN T+ V++ ++ EGRK + +++ +D + + +++++GK G
Sbjct: 201 CD-MKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVAT--ALINMYGKCGS 257
Query: 303 LEEAYEVIRTMRLEPNVIIW----------GSFLAACKEHKQFDM 337
EA EV M+ + +++ W G F A + +++ DM
Sbjct: 258 SHEAREVFDKMK-KRDMVSWNVMIGCYVQNGDFHEALELYQKLDM 301
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 100/212 (47%), Gaps = 13/212 (6%)
Query: 146 PDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYAL 205
PD +T VL CS G V G++ H I + +E + + L+ MY KC L A
Sbjct: 5 PDNVTFLTVLCSCSSCGDVA--EGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDAR 62
Query: 206 MVFELME--ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC-- 261
VFE M+ +RNV+SW A+I A G+S +AL L+ M G+ + +TF VL AC
Sbjct: 63 SVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSS 122
Query: 262 VHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVII 321
+ G R ++ +D L +V ++ + G + +A + ++++
Sbjct: 123 LAQGREIHNRVFYSGLDSFQSLA------NALVTMYARFGSVGDAKRMFQSLQTRDET-S 175
Query: 322 WGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353
W + + A + + A R+ K+ +KP +
Sbjct: 176 WNAVILAHSQSGDWSGALRIFKEMKCDMKPNS 207
>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
Length = 654
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 134/405 (33%), Positives = 232/405 (57%), Gaps = 19/405 (4%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSH-ILKLGFISHVYVATSLLHE 60
+ +S M ++ V SF+ + K+C ++ + +H IL GF ++V S++
Sbjct: 132 EFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQIHGQTILVGGFGEDLHVGNSMIDM 191
Query: 61 YVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y+ F RK+FDE+P R+ ++W +I Y KSGN+ A + F+ +P++++ +W+ M+
Sbjct: 192 YIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESAGELFDGLPVKDMVAWTVMV 251
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ + + F +M G+ D++T+ V+S C+ LG+ + + +++
Sbjct: 252 SGFAQNAKPREAIMFFEKM-QEFGVETDEITLIGVISACAQLGA-------AKYADWIRD 303
Query: 180 EWELNE-------QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
E +E + + L+DMY+KCG + A VF+ M+ERNV S++++I G A G
Sbjct: 304 VAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRV 363
Query: 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC 292
DA+ LF+ M T +KPN +TF GVLTAC H G+V++G + F+++++ Y ++P HY C
Sbjct: 364 HDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSADHYTC 423
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE 352
MVDL G+AG L+EA+E+++TM +EP+ +WG+ L AC+ HK D+A + L ++P
Sbjct: 424 MVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAA-IAANHLFELEPY 482
Query: 353 NDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
G + L+ ++Y +W VRKLM + +RK S I S
Sbjct: 483 CIGN-YILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWIES 526
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 96/404 (23%), Positives = 157/404 (38%), Gaps = 85/404 (21%)
Query: 19 ILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV---VTSFGFARKLFDE 75
I+ L C NLT I +H+ IL G YV L+ + + +F++
Sbjct: 49 IVTTLDGC---KNLTQIKQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQ 105
Query: 76 LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF 135
+ N +N +I+GY + E+ +F+ M
Sbjct: 106 VNYPNPFLYNALIRGYLIEERLKESTEFYSLM---------------------------- 137
Query: 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG-FIVKNEWELNEQIATILVDM 194
EG+ P T A+ C VGL G+ HG I+ + + + ++DM
Sbjct: 138 ----RKEGVVPVSFTFTALFKACGAKMDVGL--GRQIHGQTILVGGFGEDLHVGNSMIDM 191
Query: 195 YAKCGFLKYALMVFELMEERNVISWTALI------------------------------- 223
Y KCGFL+ VF+ M R+VISWT LI
Sbjct: 192 YIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESAGELFDGLPVKDMVAWTVMV 251
Query: 224 CGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE---- 279
G A +A+ FE MQ GV+ +E+T GV++AC G KY I +
Sbjct: 252 SGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLG----AAKYADWIRDVAEK 307
Query: 280 -EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
E+ + + ++D++ K G + +AY V + M+ E NV + S + H + A
Sbjct: 308 SEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMK-ERNVYSYSSMILGFAMHGRVHDA 366
Query: 339 ERVIKQALRM-VKPENDG--GVFTLICDLYTMNEKWEGAERVRK 379
++ + ++ +KP GV T + + W+ E + K
Sbjct: 367 MKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEK 410
>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 591
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 138/393 (35%), Positives = 216/393 (54%), Gaps = 35/393 (8%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+ QM V D+ + +LK+ + N+ +HS ++ GF S V+V SLLH Y
Sbjct: 105 FYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIY- 163
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
+ G+ A FE M R++ +W++MI +
Sbjct: 164 -----------------------------AACGDTESAYKVFELMKERDLVAWNSMINGF 194
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
G + L LFREM S EG+ PD T+ ++LS + LG+ L +G+ H +++K
Sbjct: 195 ALNGRPNEALTLFREM-SVEGVEPDGFTVVSLLSASAELGA--LELGRRVHVYLLKVGLS 251
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
N + L+D+YAKCG ++ A VF M ERN +SWT+LI G A G+ E+AL LF+ M
Sbjct: 252 KNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEM 311
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
+ G+ P+E+TF GVL AC H G++DEG +YF+ + EE + PRI+HYGCMVDL +AG
Sbjct: 312 EGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGL 371
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362
+++AYE I+ M ++PN +IW + L AC H + E + + L ++P++ G + L+
Sbjct: 372 VKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGE-IARSHLLNLEPKHSGD-YVLLS 429
Query: 363 DLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+LY +W + +R+ ML V+K G S++
Sbjct: 430 NLYASERRWSDVQVIRRSMLKDGVKKTPGYSLV 462
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 115/237 (48%), Gaps = 5/237 (2%)
Query: 92 SKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTI 151
S S + A + F + NV +W+ +I Y + P +R+M+ + + PD T
Sbjct: 63 SLSAPMSYAYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVS-CVEPDTHTY 121
Query: 152 GAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELM 211
+L S S+ + G++ H ++N +E + L+ +YA CG + A VFELM
Sbjct: 122 PFLLKAISK--SLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELM 179
Query: 212 EERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR 271
+ER++++W ++I G A G +AL+LF M GV+P+ T +L+A G ++ GR
Sbjct: 180 KERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGR 239
Query: 272 KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
+ + + L ++DL+ K G + EA V M E N + W S +
Sbjct: 240 RVHVYL-LKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMS-ERNAVSWTSLIVG 294
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 108/244 (44%), Gaps = 42/244 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF +M + V D F+++ +L + L + +H ++LK+G + +V SLL
Sbjct: 204 LTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDL 263
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + A+++F E+ ERNAV+W ++I G + +G EA
Sbjct: 264 YAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEA------------------- 304
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
L+LF+EM +GL P ++T VL CSH G+L + +K
Sbjct: 305 ------------LELFKEM-EGQGLVPSEITFVGVLYACSH---CGMLDEGFEYFRRMKE 348
Query: 180 EWELNEQIA--TILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGS---AHRGYSE 233
E + +I +VD+ ++ G +K A + M + N + W L+ H G E
Sbjct: 349 ECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGE 408
Query: 234 DALS 237
A S
Sbjct: 409 IARS 412
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 68/162 (41%), Gaps = 10/162 (6%)
Query: 170 KSAHGFIVK-----NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALIC 224
K H F ++ N ++ + + +V + A + YA VF ++ NV +W +I
Sbjct: 35 KQIHAFSIRHGVSLNNPDMGKHLIFTIVSLSAP---MSYAYNVFTVIHNPNVFTWNTIIR 91
Query: 225 GSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLE 284
G A A + M + V+P+ T+ +L A + V EG + E
Sbjct: 92 GYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEA-IHSVTIRNGFE 150
Query: 285 PRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
+ ++ ++ G E AY+V M+ E +++ W S +
Sbjct: 151 SLVFVQNSLLHIYAACGDTESAYKVFELMK-ERDLVAWNSMI 191
>gi|15229345|ref|NP_187126.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207287|sp|Q9SR01.1|PP212_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04750, mitochondrial; Flags: Precursor
gi|6175175|gb|AAF04901.1|AC011437_16 hypothetical protein [Arabidopsis thaliana]
gi|332640610|gb|AEE74131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 661
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 127/400 (31%), Positives = 240/400 (60%), Gaps = 9/400 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLG--FISHVYVATSLL 58
++L+ +M + D +++L +L C H +++ + +H I + G + S++ ++ +LL
Sbjct: 217 LKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILSNALL 276
Query: 59 HEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
Y G A++ FD + +++ +WNTM+ G+ + G++ A+ F++MP R++ SW++
Sbjct: 277 DMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNS 336
Query: 118 MIAAYLNAGAYDPGLK-LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
++ Y G ++ LF EM E + PD++T+ +++SG ++ G L G+ HG +
Sbjct: 337 LLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGE--LSHGRWVHGLV 394
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
++ + + + +++ L+DMY KCG ++ A MVF+ E++V WT++I G A G + AL
Sbjct: 395 IRLQLKGDAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQAL 454
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
LF MQ GV PN +T VLTAC H+GLV+EG F + +++ +P +HYG +VDL
Sbjct: 455 QLFGRMQEEGVTPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPETEHYGSLVDL 514
Query: 297 FGKAGFLEEAYEVI-RTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
+AG +EEA +++ + M + P+ +WGS L+AC+ + + AE + + L++ +PE +G
Sbjct: 515 LCRAGRVEEAKDIVQKKMPMRPSQSMWGSILSACRGGEDIETAELALTELLKL-EPEKEG 573
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G + L+ ++Y +W +++ R+ M N+ V+K G S +
Sbjct: 574 G-YVLLSNIYATVGRWGYSDKTREAMENRGVKKTAGYSSV 612
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 96/371 (25%), Positives = 166/371 (44%), Gaps = 84/371 (22%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+S M R V D + L+++K+ + L+ + +H HI+ G +S L Y+
Sbjct: 120 LYSSMIRHRVSPDRQTFLYLMKASSF---LSEVKQIHCHIIVSGCLS--------LGNYL 168
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
WN+++K Y + GN A F RMP +V+S++ MI Y
Sbjct: 169 ---------------------WNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGY 207
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE-- 180
G LKL+ +M+S +G+ PD+ T+ ++L C HL + L GK HG+I +
Sbjct: 208 AKQGFSLEALKLYFKMVS-DGIEPDEYTVLSLLVCCGHLSDIRL--GKGVHGWIERRGPV 264
Query: 181 WELNEQIATILVDMYAKC--------------------------GFLKYALM-----VFE 209
+ N ++ L+DMY KC GF++ M VF+
Sbjct: 265 YSSNLILSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFD 324
Query: 210 LMEERNVISWTALICGSAHRGYSEDALS--LFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
M +R+++SW +L+ G + +G + + +EM VKP+ +T +++ + G +
Sbjct: 325 QMPKRDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGEL 384
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYG------CMVDLFGKAGFLEEAYEVIRTMRLEPNVII 321
GR + L R+Q G ++D++ K G +E A+ V +T E +V +
Sbjct: 385 SHGRWV-------HGLVIRLQLKGDAFLSSALIDMYCKCGIIERAFMVFKTAT-EKDVAL 436
Query: 322 WGSFLAACKEH 332
W S + H
Sbjct: 437 WTSMITGLAFH 447
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 103/268 (38%), Gaps = 51/268 (19%)
Query: 13 PSDSFSILH----ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT---S 65
P S + H +L++C N + + I++ I + + L+ +T +
Sbjct: 27 PVQSLQLNHQSLVLLENCNSRNQF---KQVLAQIMRFNLICDTFPMSRLIFFSAITYPEN 83
Query: 66 FGFARKLF-DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLN 124
A+ LF + P N +NTMI S S N C
Sbjct: 84 LDLAKLLFLNFTPNPNVFVYNTMISAVSSSKNEC-------------------------- 117
Query: 125 AGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG-FIVKNEWEL 183
L+ MI + ++PD+ T ++ S L V K H IV L
Sbjct: 118 -------FGLYSSMIRHR-VSPDRQTFLYLMKASSFLSEV-----KQIHCHIIVSGCLSL 164
Query: 184 NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQ 243
+ LV Y + G A VF M +V S+ +I G A +G+S +AL L+ M
Sbjct: 165 GNYLWNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMV 224
Query: 244 ATGVKPNEMTFTGVLTACVHTGLVDEGR 271
+ G++P+E T +L C H + G+
Sbjct: 225 SDGIEPDEYTVLSLLVCCGHLSDIRLGK 252
>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
Length = 845
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 131/396 (33%), Positives = 223/396 (56%), Gaps = 6/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ + +M + D ++L + +C+ ++++ H ++L+ G V ++++
Sbjct: 326 LAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINM 385
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y+ A ++FD + + V+WN++I G+ ++G++ A F MP ++ SW+ MI
Sbjct: 386 YMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMI 445
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A + + ++LFR M S EG+T D++T+ V S C +LG++ L K HG+I K
Sbjct: 446 GALVQESMFKEAIELFRVMQS-EGITADKVTMVGVASACGYLGALDL--AKWIHGYIKKK 502
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + + T LVDM+A+CG + A+ VF M +R+V +WTA I A G A+ LF
Sbjct: 503 DIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELF 562
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+ M G+KP+ + F +LTA H GLV++G F+ + + Y + P+ HYGCMVDL G+
Sbjct: 563 DEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGR 622
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG L EA +I +M++EPN +IWGS LAAC+ HK D+A ++ + + PE G+
Sbjct: 623 AGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAER-ISELDPERT-GIHV 680
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y +W+ +VR + + K GSS I
Sbjct: 681 LLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSSSI 716
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 143/326 (43%), Gaps = 35/326 (10%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+F Q+ D+F+ +L +CT LT +H I+K+GF
Sbjct: 126 VFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVKMGF--------------- 170
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
ER+ N++I Y + G + R F++M RNV SW+++I Y
Sbjct: 171 ---------------ERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGY 215
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
G Y + LF EM+ G+ P+ +T+ V+S C+ L L +G+ I + E E
Sbjct: 216 AKRGCYKEAVSLFFEMV-EVGIRPNSVTMVGVISACAKLQD--LQLGEQVCTCIGELELE 272
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
+N + LVDMY KCG + A +F+ ++N++ + ++ +G + + L++ M
Sbjct: 273 VNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEM 332
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
G +P+ +T ++AC V G K+ LE +++++ K G
Sbjct: 333 LKHGPRPDRITMLSAVSACSELDDVSCG-KWCHGYVLRNGLEGWDNVCNAIINMYMKCGK 391
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAA 328
E A V M L + W S +A
Sbjct: 392 QEMACRVFDRM-LNKTRVSWNSLIAG 416
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 151/329 (45%), Gaps = 55/329 (16%)
Query: 8 HRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV----V 63
HR S P+ SF K C +T + LHS I K G H T+L+
Sbjct: 32 HRSS-PTGSF------KKC---KTMTELKQLHSQITKNGLNHHPLSLTNLISSCTEMGTF 81
Query: 64 TSFGFARKLFDELPERNAVT-----WNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
S +A+K + E N + ++++I+G+S G + A+
Sbjct: 82 ESLEYAQKALELFIEDNGIMGTHYMFSSLIRGFSACG-----------------LGYKAI 124
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
+ +FR+++ G PD T VLS C+ S L G HG IVK
Sbjct: 125 V--------------VFRQLMC-MGAVPDNFTFPFVLSACTK--SAALTEGFQVHGAIVK 167
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+E + + L+ Y +CG + VF+ M ERNV+SWT+LI G A RG ++A+SL
Sbjct: 168 MGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSL 227
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F M G++PN +T GV++AC + G + I E +LE +VD++
Sbjct: 228 FFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIG-ELELEVNALMVNALVDMYM 286
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
K G +++A ++ ++ N++++ + ++
Sbjct: 287 KCGAIDKARKIFDEC-VDKNLVLYNTIMS 314
>gi|255540655|ref|XP_002511392.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550507|gb|EEF51994.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 441
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 138/398 (34%), Positives = 237/398 (59%), Gaps = 11/398 (2%)
Query: 1 MQLFSQMHRQ-SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+ LF M ++ D + +LKSC+ + +H+HI+K+GF+S+ +VA++L+
Sbjct: 47 LTLFYHMQTSLALSLDPYVFPLVLKSCSAVLCPQLGTSVHAHIVKMGFLSNPFVASALVD 106
Query: 60 EYVVTSFGF-ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR-NVASWSA 117
Y + F ARKLFDE+P+RN V WN MI Y+ S V +A D F+ M + NV++++A
Sbjct: 107 MYGKCACIFSARKLFDEIPQRNVVVWNAMISLYTHSNRVRDALDMFDAMEIEPNVSTFNA 166
Query: 118 MIAAYLNAGAYDPGLKL--FREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
+I Y +G D +K F + GL P+ +T+ A+L C + ++ L+ + HG+
Sbjct: 167 LI--YGLSGVKDGSIKAIAFYWKMRQLGLKPNLITLLALLPACVGIAALNLI--REIHGY 222
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
++N+ + + Q+ + L+D Y +CG L A VF M+ER+V++W++LI A G +++A
Sbjct: 223 SIRNDIDRHPQLGSGLLDAYGRCGCLINASNVFCGMKERDVVAWSSLISAYALHGEAKNA 282
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
L +F M+ V+P+++TF VL AC H GL DE YF + E Y L+ HY C+VD
Sbjct: 283 LEIFRQMELAKVQPDDITFLAVLKACSHAGLADEALDYFTKMQEGYRLQAVSDHYSCLVD 342
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
+ +AG L EAY+VI+ M ++ WG+ L AC+ + + ++AE ++ +AL ++P+N
Sbjct: 343 VLSRAGRLYEAYKVIQEMPVKVTAKAWGALLGACRTYGEIELAE-IVGRALFEIEPDNPA 401
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
+ L+ +Y +++ A+R+R+ M + V+ + GSS
Sbjct: 402 N-YVLLARIYASVGRYDEAQRIRREMKERGVKVSPGSS 438
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 123/275 (44%), Gaps = 40/275 (14%)
Query: 114 SWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH 173
S++ + +++N G + L LF M ++ L+ D VL CS + L G S H
Sbjct: 29 SFTKQLTSHVNRGLHHDALTLFYHMQTSLALSLDPYVFPLVLKSCSAVLCPQL--GTSVH 86
Query: 174 GFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE 233
IVK + N +A+ LVDMY KC + A +F+ + +RNV+ W A+I H
Sbjct: 87 AHIVKMGFLSNPFVASALVDMYGKCACIFSARKLFDEIPQRNVVVWNAMISLYTHSNRVR 146
Query: 234 DALSLFEMMQ---------------------------------ATGVKPNEMTFTGVLTA 260
DAL +F+ M+ G+KPN +T +L A
Sbjct: 147 DALDMFDAMEIEPNVSTFNALIYGLSGVKDGSIKAIAFYWKMRQLGLKPNLITLLALLPA 206
Query: 261 CVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNV 319
CV ++ R+ + I + D P++ ++D +G+ G L A V M+ E +V
Sbjct: 207 CVGIAALNLIREIHGYSIRNDIDRHPQLG--SGLLDAYGRCGCLINASNVFCGMK-ERDV 263
Query: 320 IIWGSFLAACKEHKQFDMAERVIKQ-ALRMVKPEN 353
+ W S ++A H + A + +Q L V+P++
Sbjct: 264 VAWSSLISAYALHGEAKNALEIFRQMELAKVQPDD 298
>gi|302142959|emb|CBI20254.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 136/397 (34%), Positives = 215/397 (54%), Gaps = 46/397 (11%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ + M + V SF+ ++K+C+ + L +H HI K GF SHV+V T+L+
Sbjct: 95 LDCYLDMVQAQVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDF 154
Query: 61 Y-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y AR++FDE+ ER+ W TMI ++++G++ AR F+ MP+RN ASW+AMI
Sbjct: 155 YGNAGKIVEARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMI 214
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y + LF +M P++ I
Sbjct: 215 DGYSRLRNVESAELLFSQM-------PNRDIIS--------------------------- 240
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
W T ++ Y++ L +L+VF + ++N+ W ++I G A GY+E+AL++F
Sbjct: 241 -W-------TTMIACYSQNKHLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEEALAMF 292
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MQ +KPN +TF VL AC H GLV+EGRK F + ++ + P I+HYGCMVDL GK
Sbjct: 293 SRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFLSMSRDFSIPPEIEHYGCMVDLLGK 352
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG LE+A E++R+MR+EPN +IWG+ L CK H+ +A+ + ++ ++++P N+ G +T
Sbjct: 353 AGLLEDALELVRSMRMEPNSVIWGALLGGCKLHRNLKIAQVAVNES-KVLEP-NNSGYYT 410
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRK-ARGSSVI 395
L+ ++Y +W +R M V K + GSS I
Sbjct: 411 LLVNMYAEVNRWSEVANIRATMKELGVEKTSPGSSWI 447
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 7/186 (3%)
Query: 201 LKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260
+ YA++ F M+E NV + A+I + AL + M V P TF+ ++ A
Sbjct: 60 IDYAILAFTHMQEPNVFVYNAMIRALVQCYHPVQALDCYLDMVQAQVSPTSFTFSSLVKA 119
Query: 261 CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVI 320
C + G I +Y + + +VD +G AG + EA V M E +V
Sbjct: 120 CSLVSELGFGEAVHGHI-WKYGFDSHVFVQTALVDFYGNAGKIVEARRVFDEMS-ERDVF 177
Query: 321 IWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKL 380
W + ++ A ++ + P + + + D Y+ E AE +
Sbjct: 178 AWTTMISVHARTGDMSSARQLFDEM-----PVRNTASWNAMIDGYSRLRNVESAELLFSQ 232
Query: 381 MLNQNV 386
M N+++
Sbjct: 233 MPNRDI 238
>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
mitochondrial-like [Vitis vinifera]
Length = 632
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 134/395 (33%), Positives = 220/395 (55%), Gaps = 7/395 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+F +M R V D +++ + C ++ V H ++K+G +++ Y
Sbjct: 105 IFVEMRRCGVKPDEVTLVCLFGGCARLGDVVVGAQGHGCMVKMGLGGVEKACNAVMDMYA 164
Query: 63 VTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+ G AR++F E+ ++ V+W ++ G +S V R F+ MP RN +W+ MIA
Sbjct: 165 KSGLMGEARRVFYEMKGQSVVSWTVILDGVIRSEGVRNGRVVFDEMPERNEVAWTIMIAG 224
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN-E 180
YL++G L REMI + + + +T+ ++L+ CS G L+MG+ H + +K E
Sbjct: 225 YLDSGLTQESFALVREMIFDLEMELNYVTLCSILTACSQSGD--LMMGRWVHAYALKTKE 282
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
ELN + T +VDMYAKCG + A F+ M +RNV+SW A++ G A G AL +F
Sbjct: 283 KELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQRNVVSWNAMLSGLAMHGLGRAALDIFP 342
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M KP+++TFT VL+AC H+GLVD+G YF ++ Y + P+++HY CMVDL G+A
Sbjct: 343 QMFKEA-KPDDVTFTSVLSACSHSGLVDQGCFYFGNLESVYGITPKVEHYACMVDLLGRA 401
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G LEEA ++R M + PN ++ GS L +C H + + E ++ Q L + P+N L
Sbjct: 402 GRLEEAEILVREMPIRPNEVVLGSLLGSCSIHGKLQLGEHLL-QELVQLDPQNT-EYHIL 459
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y + K A +R+++ + ++K G S I
Sbjct: 460 LSNMYALAGKQNRANSLRQVLKKRGIKKVPGMSSI 494
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/367 (23%), Positives = 155/367 (42%), Gaps = 68/367 (18%)
Query: 22 ILKSCTHFNNLTVIHHLHSHILKLGFIS--HVYVATSLLHEYVVTSFGF-ARKLFDELPE 78
+L+SC ++L + LH+ I+ G ++ +LL Y + ARK+FDE+P
Sbjct: 19 LLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDEIPH 78
Query: 79 RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM 138
+ ++ W+ ++ ++ D L +F EM
Sbjct: 79 SH-----------------------------KDTVDWTTLMGCFVRHNVSDEALLIFVEM 109
Query: 139 ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198
G+ PD++T+ + GC+ LG V ++G HG +VK E+ ++DMYAK
Sbjct: 110 -RRCGVKPDEVTLVCLFGGCARLGDV--VVGAQGHGCMVKMGLGGVEKACNAVMDMYAKS 166
Query: 199 GFL-------------------------------KYALMVFELMEERNVISWTALICGSA 227
G + + +VF+ M ERN ++WT +I G
Sbjct: 167 GLMGEARRVFYEMKGQSVVSWTVILDGVIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYL 226
Query: 228 HRGYSEDALSLF-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR 286
G ++++ +L EM+ ++ N +T +LTAC +G + GR + + E
Sbjct: 227 DSGLTQESFALVREMIFDLEMELNYVTLCSILTACSQSGDLMMGRWVHAYALKTKEKELN 286
Query: 287 IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQAL 346
I MVD++ K G + A++ + M + NV+ W + L+ H A + Q
Sbjct: 287 IMVGTAMVDMYAKCGRIHIAFKFFKKMP-QRNVVSWNAMLSGLAMHGLGRAALDIFPQMF 345
Query: 347 RMVKPEN 353
+ KP++
Sbjct: 346 KEAKPDD 352
>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 649
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 135/400 (33%), Positives = 222/400 (55%), Gaps = 39/400 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVI----HHLHSHILKLGFISHVYVATS 56
++L+ +M+ V SD F+ ++LK+C L +H+HIL+ G+ +HV+V T
Sbjct: 155 LELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMT- 213
Query: 57 LLHEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
T++ Y++ G V A F+ MP++NV SWS
Sbjct: 214 -----------------------------TLMDMYARFGCVSYASAVFDEMPVKNVVSWS 244
Query: 117 AMIAAYLNAGAYDPGLKLFREMISN-EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
AMIA Y G L+LFREM+ N P+ +T+ +VL C+ + L GK H +
Sbjct: 245 AMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAA--LEQGKLIHAY 302
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
I++ + + + L+ MYA+CG L+ ++F+ M +++V+ W +LI GY A
Sbjct: 303 ILRRGLDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKA 362
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
+ +FE M G P+ ++F VL AC HTGLV+EG+K F+ + +E+ ++P ++HY CMVD
Sbjct: 363 IKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVD 422
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
L G+A L+EA ++I +R+EP +WGS L AC+ H ++AER K+ ++ +P N G
Sbjct: 423 LLGRANRLDEAAKIIEDLRIEPGPKVWGSLLGACRIHCHVELAERASKRLFKL-EPTNAG 481
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ D+Y E W+ +RV+KL+ ++ ++K G S I
Sbjct: 482 N-YVLLADIYAEAEMWDEVKRVKKLLDSRELQKVPGRSWI 520
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/332 (25%), Positives = 147/332 (44%), Gaps = 40/332 (12%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
Q + +S P+ L IL S N+L+ +H ++ GF ++AT L++ +
Sbjct: 56 QALYLLSHESNPTQQTCELLIL-SAARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMF 114
Query: 62 V-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ + ARK+FD+ +R WN + + + +G + + + RM + V+S
Sbjct: 115 SELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSS------ 168
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGC--SHLGSVGLLMGKSAHGFIVK 178
D+ T +L C S L GK H I++
Sbjct: 169 --------------------------DRFTYTYLLKACVASECLVSFLQKGKEIHAHILR 202
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ + + + T L+DMYA+ G + YA VF+ M +NV+SW+A+I A G +AL L
Sbjct: 203 HGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALEL 262
Query: 239 F-EMMQAT-GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
F EMM T PN +T VL AC +++G+ I L+ + ++ +
Sbjct: 263 FREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRR-GLDSILPVISALITM 321
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
+ + G LE + M + +V++W S +++
Sbjct: 322 YARCGKLESGQLIFDRMH-KKDVVLWNSLISS 352
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 93/207 (44%), Gaps = 10/207 (4%)
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
++S+E P Q T ++ + S+ + H +V ++ + +AT L++M+++
Sbjct: 60 LLSHES-NPTQQTCELLILSAARRNSLSDAL--DVHQLLVDGGFDQDPFLATKLINMFSE 116
Query: 198 CGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGV 257
+ A VF+ +R + W AL A G D L L+ M GV + T+T +
Sbjct: 117 LDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYL 176
Query: 258 LTACVHT----GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
L ACV + + +G++ I + + ++D++ + G + A V M
Sbjct: 177 LKACVASECLVSFLQKGKEIHAHI-LRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEM 235
Query: 314 RLEPNVIIWGSFLAA-CKEHKQFDMAE 339
++ NV+ W + +A K K ++ E
Sbjct: 236 PVK-NVVSWSAMIACYAKNGKPYEALE 261
>gi|147769957|emb|CAN70049.1| hypothetical protein VITISV_013371 [Vitis vinifera]
Length = 476
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 136/395 (34%), Positives = 223/395 (56%), Gaps = 35/395 (8%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ M R V + +LK+C++F +L +H+H+LK G +++V
Sbjct: 115 LYVDMRRLDVIPGKHTFPFLLKACSNFQSLQSCIQVHTHVLKFGLDLNLHVV-------- 166
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
N +++ YS S +V AR F+ + R+++ W+ MI+ Y
Sbjct: 167 ----------------------NGLVRAYSVSCDVRNARRVFDEVSERSLSIWTTMISGY 204
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+ L+LF +MI EGL P+ T+ +VLS C+ G + L G+ H F+ + E
Sbjct: 205 AQNYCSNEALELFDQMIV-EGLEPNGATLASVLSACAQSGCLDL--GERIHVFMEEKGIE 261
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
+ + T LV MYAK G + A +F+ + ERN +W A+ICG A G++++AL F +
Sbjct: 262 VGVILGTALVHMYAKNGAILMAQKLFDXISERNTATWNAMICGLAVHGHAKEALDRFWKL 321
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
+ + PN++TF GVL+AC H GL+ GRK F ++ Y +EP+I+HYGCMVDL G+ G
Sbjct: 322 EKEQIVPNDITFVGVLSACCHAGLLSVGRKIFHLMKRVYGIEPKIEHYGCMVDLLGRGGE 381
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362
L EA E+I+ M + +V+I G+ L +CK H ++AERV+K+ L +++P N GV+ ++
Sbjct: 382 LLEAEELIKGMAWKADVVILGALLGSCKNHGNIEIAERVVKEIL-VLEPHNH-GVYVVLS 439
Query: 363 DLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
++Y +WE R+RK+M + N++K G S++ S
Sbjct: 440 NMYAEAGRWEDVLRLRKVMKSGNLKKTPGWSLVDS 474
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 111/241 (46%), Gaps = 5/241 (2%)
Query: 92 SKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTI 151
S+SG++ A F N W+ +I A+ ++ L L+ +M + P + T
Sbjct: 73 SESGDLSYALRLFNNTQEPNSFMWNTLIRAHASSLNPSEALLLYVDM-RRLDVIPGKHTF 131
Query: 152 GAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELM 211
+L CS+ S+ + H ++K +LN + LV Y+ ++ A VF+ +
Sbjct: 132 PFLLKACSNFQSLQSCI--QVHTHVLKFGLDLNLHVVNGLVRAYSVSCDVRNARRVFDEV 189
Query: 212 EERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR 271
ER++ WT +I G A S +AL LF+ M G++PN T VL+AC +G +D G
Sbjct: 190 SERSLSIWTTMISGYAQNYCSNEALELFDQMIVEGLEPNGATLASVLSACAQSGCLDLGE 249
Query: 272 KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKE 331
+ + EE +E + +V ++ K G + A ++ + E N W + +
Sbjct: 250 R-IHVFMEEKGIEVGVILGTALVHMYAKNGAILMAQKLFDXIS-ERNTATWNAMICGLAV 307
Query: 332 H 332
H
Sbjct: 308 H 308
>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
Length = 710
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 138/403 (34%), Positives = 220/403 (54%), Gaps = 13/403 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLG-FISHVYVATSLLH 59
++ F +M D ++ ++ +C +H+ ++K F + + + +L+
Sbjct: 242 LEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVD 301
Query: 60 EYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y AR +FD +P RNAV+ TM+ GY+KS +V AR F + +++ SW+A+
Sbjct: 302 MYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNAL 361
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
IA Y G + L LFR M+ E + P T G +L+ ++L L +G+ AH +VK
Sbjct: 362 IAGYTQNGENEEALGLFR-MLKRESVCPTHYTFGNLLNASANLAD--LELGRQAHSHVVK 418
Query: 179 NEWELNEQ------IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
+ + + L+DMY KCG ++ L VFE M E++ +SW +I G A GY
Sbjct: 419 HGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYG 478
Query: 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC 292
+AL LF+ M +G KP+ +T G L AC H GLV+EGR+YF + +E+ L P HY C
Sbjct: 479 MEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTC 538
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE 352
MVDL G+AG LEEA ++I +M +P+ ++W S L+ACK H+ + + V ++ + P
Sbjct: 539 MVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVHRNITLGKYVAEKIFE-IDPT 597
Query: 353 NDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ G + L+ ++Y+ +W A VRKLM + V K G S I
Sbjct: 598 S-SGPYVLLANMYSELGRWGDAVSVRKLMRRRGVVKQPGCSWI 639
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 147/301 (48%), Gaps = 4/301 (1%)
Query: 14 SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSF-GFARKL 72
+DS +L C + +H +++ F V++ L+ Y + +ARK+
Sbjct: 22 TDSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKV 81
Query: 73 FDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGL 132
FD + ERN ++N++I + G V E+ F MP ++ SW++MIA + ++ L
Sbjct: 82 FDRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEAL 141
Query: 133 KLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILV 192
F M ++ + D + G+ LS CS L L +G HG I K+++ L+ + + L+
Sbjct: 142 DWFVRMHRDDFVLND-YSFGSGLSACSRLKD--LKLGAQIHGLISKSKYSLDVFMGSGLI 198
Query: 193 DMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEM 252
D Y+KCG + A VF+ MEE+NV+SW LI G + +AL F M G KP+E+
Sbjct: 199 DFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEV 258
Query: 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312
T V++AC EG + + + + +VD++ K G + EA V
Sbjct: 259 TLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDR 318
Query: 313 M 313
M
Sbjct: 319 M 319
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/364 (25%), Positives = 155/364 (42%), Gaps = 73/364 (20%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ F +MHR + +S L +C+ +L + +H I K + V++ + L+
Sbjct: 141 LDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDF 200
Query: 61 YVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y G AR++FD + E+N V+WN +I Y ++G EA + F RM
Sbjct: 201 YSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRM------------ 248
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ G PD++T+ +V+S C+ L + G H +VK+
Sbjct: 249 --------------------TELGFKPDEVTLASVVSACATLAA--FKEGVQIHARVVKS 286
Query: 180 EWELNEQI-ATILVDMYAKCGFLKYALMVFELMEERN----------------------- 215
+ N+ I LVDMYAKCG + A VF+ M RN
Sbjct: 287 DKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSM 346
Query: 216 --------VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
++SW ALI G G +E+AL LF M++ V P TF +L A + +
Sbjct: 347 FATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADL 406
Query: 268 DEGRKYFKMIDE-----EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
+ GR+ + + + EP I ++D++ K G +EE V M +E + + W
Sbjct: 407 ELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENM-VEKDHVSW 465
Query: 323 GSFL 326
+ +
Sbjct: 466 NTMI 469
>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
Length = 1020
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 142/398 (35%), Positives = 223/398 (56%), Gaps = 14/398 (3%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE-Y 61
LF++M R+ + S + I + KS L V + LK +++ TS+L+
Sbjct: 503 LFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTY----TSILNACS 558
Query: 62 VVTSFGFARKLFDELPERNAVT----WNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
+ + R++ ++ E T NT++ YS G+V +AR F+RM R++ +++A
Sbjct: 559 SPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNA 618
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MI Y LKLF + + EGL PD++T +L+ C++ GS L K H ++
Sbjct: 619 MIGGYAAHNLGKEALKLF-DRLQEEGLKPDKVTYINMLNACANSGS--LEWAKEIHSLVL 675
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
K+ + + + LV YAKCG AL+VF+ M +RNVISW A+I G A G +D L
Sbjct: 676 KDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQ 735
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LFE M+ G+KP+ +TF +L+AC H GL++EGR+YF + ++ + P I+HYGCMVDL
Sbjct: 736 LFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLL 795
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
G+AG L+E +I+TM + N IWG+ L AC+ H +AER + +L++ P+N V
Sbjct: 796 GRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKL-DPDN-AAV 853
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ + +Y W+ A ++RKLM + V K G S I
Sbjct: 854 YVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWI 891
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 164/332 (49%), Gaps = 37/332 (11%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
++F +M ++ V + + +++L + + L +HSHIL G S + V T+L+ Y
Sbjct: 331 EIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMY 390
Query: 62 V-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
S+ R++F++L R+ + WNTMI G ++ GN EA + + +M
Sbjct: 391 AKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQM------------- 437
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
EG+ P+++T +L+ C + L G+ H +VK+
Sbjct: 438 -------------------QREGMMPNKITYVILLNAC--VNPTALHWGREIHSRVVKDG 476
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ + + L+ MYA+CG +K A ++F M +++ISWTA+I G A G +AL++F+
Sbjct: 477 FMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQ 536
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
MQ G+KPN +T+T +L AC +D GR+ + + E L +V+++
Sbjct: 537 DMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEA-GLATDAHVANTLVNMYSMC 595
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
G +++A +V M + +++ + + + H
Sbjct: 596 GSVKDARQVFDRM-TQRDIVAYNAMIGGYAAH 626
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/419 (24%), Positives = 186/419 (44%), Gaps = 67/419 (15%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L +M + + + + +L SC + L +H +K
Sbjct: 229 LKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMK---------------- 272
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
AR LFD N ++ Y+K G++ EAR+ F++M ++V SW+ +I
Sbjct: 273 --------ARLLFD------VNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIG 318
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y + G + ++F++M EG+ P+++T VL+ S G L GK+ H I+
Sbjct: 319 GYADCGHSEIAFEIFQKM-QQEGVVPNRITYINVLNAFS--GPAALKWGKTVHSHILNAG 375
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
E + + T LV MYAKCG K VFE + R++I+W +I G A G E+A ++
Sbjct: 376 HESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYH 435
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQH---------- 289
MQ G+ PN++T+ +L ACV+ + GR+ + +++ + + + +Q+
Sbjct: 436 QMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCG 495
Query: 290 -------------------YGCMVDLFGKAGFLEEAYEVIRTMR---LEPNVIIWGSFLA 327
+ M+ K+G EA V + M+ L+PN + + S L
Sbjct: 496 SIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILN 555
Query: 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386
AC D R+ +Q + D V + ++Y+M + A +V M +++
Sbjct: 556 ACSSPAALDWGRRIHQQVIE-AGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDI 613
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 96/352 (27%), Positives = 153/352 (43%), Gaps = 43/352 (12%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
M + + +Q +S + +LK C +L +H HI I H V L +
Sbjct: 126 MDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHI-----IQHCTV----LDQ 176
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERM--PLRNVASWSAM 118
Y V N +I Y + G++ EAR + ++ R V SW+AM
Sbjct: 177 YTV---------------------NALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAM 215
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
+ Y+ G + LKL REM GL + T +LS C L G+ H +K
Sbjct: 216 VVGYVQYGYIEEALKLLREM-QQHGLALGRATTMRLLSSCK--SPSALECGREIHVEAMK 272
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ +A +++MYAKCG + A VF+ ME ++V+SWT +I G A G+SE A +
Sbjct: 273 ARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEI 332
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI---DEEYDLEPRIQHYGCMVD 295
F+ MQ GV PN +T+ VL A + G+ I E DL +V
Sbjct: 333 FQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGT----ALVK 388
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALR 347
++ K G ++ +V + + ++I W + + E ++ A + Q R
Sbjct: 389 MYAKCGSYKDCRQVFEKL-VNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQR 439
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 116/250 (46%), Gaps = 34/250 (13%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF ++ + + D + +++L +C + +L +HS +LK G++S + +L+
Sbjct: 633 LKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVST 692
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR----NVASW 115
Y SF A +FD++ +RN ++WN +I G ++ G + FERM + ++ ++
Sbjct: 693 YAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTF 752
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV----------- 164
++++A +AG + G + F M + G+TP G ++ G +
Sbjct: 753 VSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMP 812
Query: 165 --------GLLMGKSA-HGFI------VKNEWELNEQIATILV---DMYAKCGFLKYALM 206
G L+G HG + ++ +L+ A + V MYA G A
Sbjct: 813 FQANTRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAK 872
Query: 207 VFELMEERNV 216
+ +LME+R V
Sbjct: 873 LRKLMEQRGV 882
>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Cucumis sativus]
Length = 614
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 130/359 (36%), Positives = 209/359 (58%), Gaps = 6/359 (1%)
Query: 38 LHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGN 96
+H ++K GF +V + L+ Y ++ ++F+ + + + V TM+ +K G+
Sbjct: 132 VHGALIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAKCGD 191
Query: 97 VCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLS 156
+ AR+ F+ MP R+ SW+AMIA Y G L LF+ ++ +G+ +++++ +V++
Sbjct: 192 IGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFK-LMQMDGVKVNEVSMISVVT 250
Query: 157 GCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNV 216
C+HLG+ L GK AH +I KN+ ++ + T LVDMY KCG + AL VF M E+NV
Sbjct: 251 ACTHLGA--LDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNV 308
Query: 217 ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKM 276
+W+ I G A GY + L LF M+ G+ PNE+TF VL C G VDEGR +F
Sbjct: 309 YTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDS 368
Query: 277 IDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFD 336
+ ++ +EPR++HYGCMVDL+G+AG LEEA I TM L+P+ WG+ L AC+ +K +
Sbjct: 369 MKRDHGIEPRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNME 428
Query: 337 MAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ E ++ + V+ +N G +L ++Y W+ VR+ M + + K G SV+
Sbjct: 429 LGEFASRKLIE-VEGKNHGAYVSL-SNIYADTGNWDRVSNVRQSMKAEGISKLPGCSVM 485
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 148/334 (44%), Gaps = 69/334 (20%)
Query: 29 FNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV---TSFGFARKLFDELPERNAVTWN 85
F L + +H+ ++ G +++ + + V T+ ++ ++ D+ + N
Sbjct: 19 FITLKELKQIHTQLVINGLLNNRELLGQFVASIAVRNPTNLLYSNQILDQCAKPTLFALN 78
Query: 86 TMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLT 145
+MI+ YSKS ++ F+ ++ + SN+ ++
Sbjct: 79 SMIRAYSKSLTPHKSFQFYNKI------------------------------LQSNDVMS 108
Query: 146 PDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY---------- 195
PD T ++ C+ G + HG ++K+ +E + + + L+ MY
Sbjct: 109 PDNYTFNFLVRTCAQSACEA---GPAVHGALIKHGFEYDPHVESGLIFMYAEMSCLSSCH 165
Query: 196 ---------------------AKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
AKCG + +A +F+ M +R+ +SW A+I G A RG S +
Sbjct: 166 RVFESVQKPDLVCQTTMVSACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSRE 225
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
AL+LF++MQ GVK NE++ V+TAC H G +D+G+ I E+ ++ + +V
Sbjct: 226 ALNLFKLMQMDGVKVNEVSMISVVTACTHLGALDQGKWAHAYI-EKNKIQMTVNLGTALV 284
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
D++ K G ++ A +V M E NV W + +
Sbjct: 285 DMYFKCGNVDRALKVFWEMN-EKNVYTWSTAIGG 317
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 102/243 (41%), Gaps = 41/243 (16%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF M V + S++ ++ +CTH L H++I K V + T+L+
Sbjct: 227 LNLFKLMQMDGVKVNEVSMISVVTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVDM 286
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + A K+F E+ E+N TW+T I G + +G + + F M
Sbjct: 287 YFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSFM------------ 334
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+EG+ P+++T +VL GCS VG + +H +K
Sbjct: 335 --------------------KHEGIAPNEITFISVLKGCS---VVGFVDEGRSHFDSMKR 371
Query: 180 EWELNEQIA--TILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSEDAL 236
+ + ++ +VD+Y + G L+ AL M + + +W AL+ +A R Y L
Sbjct: 372 DHGIEPRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALL--NACRMYKNMEL 429
Query: 237 SLF 239
F
Sbjct: 430 GEF 432
>gi|242063604|ref|XP_002453091.1| hypothetical protein SORBIDRAFT_04g038305 [Sorghum bicolor]
gi|241932922|gb|EES06067.1| hypothetical protein SORBIDRAFT_04g038305 [Sorghum bicolor]
Length = 514
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 139/383 (36%), Positives = 217/383 (56%), Gaps = 24/383 (6%)
Query: 29 FNNLTVIHHLHSHILKLGFISHVYVATSLLHEY----VVTSFGFARKLF-DELPERNA-- 81
F ++ LH+ + L + +H YVA L+H Y VV S AR+LF D L R A
Sbjct: 100 FGAHAIVPSLHALAVVLAWDAHAYVANGLIHAYATHGVVPS---ARRLFEDALASRAADV 156
Query: 82 VTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISN 141
+W +++ +K+G V EAR F+ MP RN +WSAM++AY+ AG++D ++LF +M+ +
Sbjct: 157 CSWTSLLTACAKAGQVEEARALFDGMPRRNDVAWSAMLSAYVAAGSFDDAVRLFEDMLRS 216
Query: 142 EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN------EWELNEQIATILVDMY 195
G+ P++ + VL+ C LG+ L G+ H +V ++ +AT LVDMY
Sbjct: 217 -GVRPNRAAVVGVLAACGALGA--LDQGRWVHALLVSGTHGGDGATAMDGVVATALVDMY 273
Query: 196 AKCGFLKYALMVFELM---EERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEM 252
AKCG L A VF +R+V ++TA+I G + G +A+ LF MQA GV+PNE+
Sbjct: 274 AKCGSLDTARQVFAAAAPRSQRDVFAYTAMISGLSDHGRCGEAIDLFGQMQAEGVRPNEV 333
Query: 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312
TF VLTAC GLV ++ F+ + + +EP ++HYGC+VD+ G+AG L EA E +R+
Sbjct: 334 TFICVLTACGRAGLVGRAKEVFRSMAAVHGMEPGVEHYGCLVDVLGRAGLLAEAMETVRS 393
Query: 313 MRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWE 372
M + P+ + G+ L AC H + E+V++ + + GV + ++Y KWE
Sbjct: 394 MTMRPDAYVLGALLNACAAHGDVEAGEQVVRWLAELGL--DHSGVHVQLSNMYAGWSKWE 451
Query: 373 GAERVRKLMLNQNVRKARGSSVI 395
+VR+ M + V K G S++
Sbjct: 452 EVLKVRRTMDQRKVAKVPGCSML 474
>gi|225451435|ref|XP_002273841.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 474
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 136/395 (34%), Positives = 223/395 (56%), Gaps = 35/395 (8%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ M R V + +LK+C++F +L +H+H+LK G +++V
Sbjct: 113 LYVDMRRLDVIPGKHTFPFLLKACSNFQSLQSCIQVHTHVLKFGLDLNLHVV-------- 164
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
N +++ YS S +V AR F+ + R+++ W+ MI+ Y
Sbjct: 165 ----------------------NGLVRAYSVSCDVRNARRVFDEVSERSLSIWTTMISGY 202
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+ L+LF +MI EGL P+ T+ +VLS C+ G + L G+ H F+ + E
Sbjct: 203 AQNYCSNEALELFDQMIV-EGLEPNGATLASVLSACAQSGCLDL--GERIHVFMEEKGIE 259
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
+ + T LV MYAK G + A +F+ + ERN +W A+ICG A G++++AL F +
Sbjct: 260 VGVILGTALVHMYAKNGAILMAQKLFDTISERNTATWNAMICGLAVHGHAKEALDRFWKL 319
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
+ + PN++TF GVL+AC H GL+ GRK F ++ Y +EP+I+HYGCMVDL G+ G
Sbjct: 320 EKEQIVPNDITFVGVLSACCHAGLLSVGRKIFHLMKRVYGIEPKIEHYGCMVDLLGRGGE 379
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362
L EA E+I+ M + +V+I G+ L +CK H ++AERV+K+ L +++P N GV+ ++
Sbjct: 380 LLEAEELIKGMAWKADVVILGALLGSCKNHGNIEIAERVVKEIL-VLEPHNH-GVYVVLS 437
Query: 363 DLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
++Y +WE R+RK+M + N++K G S++ S
Sbjct: 438 NMYAEAGRWEDVLRLRKVMKSGNLKKTPGWSLVDS 472
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 141/333 (42%), Gaps = 44/333 (13%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L S +H P FS+L CT + L IH + ++ I Y A+ LL
Sbjct: 15 LTSVLHPPPPPPPRFSLL--ADKCTSMHQLKQIH---AQMIVSARIHDNYAASRLLSFCA 69
Query: 63 VTSFG---FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
++ G +A +LF+ E N+ WNT+I+ ++ S N EA + M +V
Sbjct: 70 LSESGDLSYALRLFNNTQEPNSFMWNTLIRAHASSLNPSEALLLYVDMRRLDV------- 122
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
P + T +L CS+ S+ + H ++K
Sbjct: 123 -------------------------IPGKHTFPFLLKACSNFQSLQSCI--QVHTHVLKF 155
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+LN + LV Y+ ++ A VF+ + ER++ WT +I G A S +AL LF
Sbjct: 156 GLDLNLHVVNGLVRAYSVSCDVRNARRVFDEVSERSLSIWTTMISGYAQNYCSNEALELF 215
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+ M G++PN T VL+AC +G +D G + + EE +E + +V ++ K
Sbjct: 216 DQMIVEGLEPNGATLASVLSACAQSGCLDLGER-IHVFMEEKGIEVGVILGTALVHMYAK 274
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
G + A ++ T+ E N W + + H
Sbjct: 275 NGAILMAQKLFDTIS-ERNTATWNAMICGLAVH 306
>gi|356513796|ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 595
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 129/342 (37%), Positives = 204/342 (59%), Gaps = 7/342 (2%)
Query: 57 LLHEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP--LRNVA 113
L+ YV V A +LF+ +PER+AV+WN MI G ++ GNV A FF+RMP +RNV
Sbjct: 210 LIAGYVGVGDLDAANELFETIPERDAVSWNCMIDGCARVGNVSLAVKFFDRMPAAVRNVV 269
Query: 114 SWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH 173
SW++++A + Y L LF +M+ P++ T+ +VL+ C++LG L MG H
Sbjct: 270 SWNSVLALHARVKNYGECLMLFGKMVEGREAVPNEATLVSVLTACANLGK--LSMGMWVH 327
Query: 174 GFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE 233
FI N + + + T L+ MYAKCG + A VF+ M R+V+SW ++I G G +
Sbjct: 328 SFIRSNNIKPDVLLLTCLLTMYAKCGAMDLAKGVFDEMPVRSVVSWNSMIMGYGLHGIGD 387
Query: 234 DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293
AL LF M+ G +PN+ TF VL+AC H G+V EG YF ++ Y +EP+++HYGCM
Sbjct: 388 KALELFLEMEKAGQQPNDATFISVLSACTHAGMVMEGWWYFDLMQRVYKIEPKVEHYGCM 447
Query: 294 VDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353
VDL +AG +E + E+IR + ++ IWG+ L+ C H ++ E V K+ + + +P+
Sbjct: 448 VDLLARAGLVENSEELIRMVPVKAGSAIWGALLSGCSNHLDSELGEIVAKRFIEL-EPQ- 505
Query: 354 DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
D G + L+ ++Y +W+ E VR ++ + ++K SS++
Sbjct: 506 DIGPYILLSNMYAAKGRWDDVEHVRLMIKEKGLQKEAASSLV 547
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/327 (24%), Positives = 139/327 (42%), Gaps = 37/327 (11%)
Query: 29 FNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARK--LFDELPERNAVTWNT 86
+ NL ++ + S ++ G H ATS + + S F R LFD L +A NT
Sbjct: 17 WKNLHELNQVLSQLIVSGLSQHPLFATSAIKKLCSHSVTFPRATFLFDHLHHPDAFHCNT 76
Query: 87 MIKGYSKSGNVCEA-RDFFERMPLRNVA----SWSAMIAAYLNAGAYDPGLKLFREMISN 141
+I+ Y++ + A R ++ +M R+V ++ +I + G++ GLK ++
Sbjct: 77 IIRAYARKPDFPAALRFYYCKMLARSVPPNHYTFPLLIKVCTDIGSFREGLKGHARIVKF 136
Query: 142 EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFL 201
G D +++ S G +G +A ++ W L+ ++D Y K G +
Sbjct: 137 -GFGSDLFARNSLIRMYSVFGRIG-----NARMVFDESCW-LDLVSYNSMIDGYVKNGEI 189
Query: 202 KYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261
A VF M +R+V+SW LI G G + A LFE + + + +++ ++ C
Sbjct: 190 GAARKVFNEMPDRDVLSWNCLIAGYVGVGDLDAANELFETIP----ERDAVSWNCMIDGC 245
Query: 262 VHTGLVDEGRKYFKMI----------DEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR 311
G V K+F + + L R+++YG + LFGK + E E +
Sbjct: 246 ARVGNVSLAVKFFDRMPAAVRNVVSWNSVLALHARVKNYGECLMLFGK---MVEGREAV- 301
Query: 312 TMRLEPNVIIWGSFLAACKEHKQFDMA 338
PN S L AC + M
Sbjct: 302 -----PNEATLVSVLTACANLGKLSMG 323
>gi|297729191|ref|NP_001176959.1| Os12g0490100 [Oryza sativa Japonica Group]
gi|255670316|dbj|BAH95687.1| Os12g0490100 [Oryza sativa Japonica Group]
Length = 451
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 133/419 (31%), Positives = 226/419 (53%), Gaps = 38/419 (9%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGF-ISHVYVATSLLHEY-VVTSFGFARKL 72
++F++ ++K C+ + +H+ + K G S V+V +LL Y + G AR++
Sbjct: 9 NAFTVTSVIKCCSKVRAVHEGLQVHAFLAKAGLGCSSVHVGAALLDLYGNIGLVGDARRV 68
Query: 73 FDELP-------------------------------ERNAVTWNTMIKGYSKSGNVCEAR 101
FDE+P ER+ ++WNT++ GY G+ R
Sbjct: 69 FDEMPVKNVVVGNTMVACNVRAGDMGAAREVFDGMAERDPISWNTLMSGYLHLGDTATVR 128
Query: 102 DFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHL 161
+ F+ M +RNV SW+ MIAA G+ +K+F M + G PD T+ ++S C+ L
Sbjct: 129 ELFDEMTVRNVNSWNTMIAACSEEGSLADTVKVFNRMRAT-GFEPDAATMAVLMSACAQL 187
Query: 162 GSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTA 221
GS L + HG + K+ E+N + L+DMYAKCG + A +F ++ +S+
Sbjct: 188 GS--LTIAGQVHGLLQKSCVEMNCHVQNSLIDMYAKCGCISQAQFLFTETYPKDTVSYNV 245
Query: 222 LICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY 281
+I A G++ DAL LF M +G++P+ +TF GVL+AC H GLV+ G+ YF+++ Y
Sbjct: 246 MIIAFAQHGHARDALDLFNAMVDSGLQPDAVTFLGVLSACAHAGLVEYGKNYFELMKTTY 305
Query: 282 DLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERV 341
++ HY C+VDL+G+AG +EEA+ ++TM ++P+ +WG+ L AC++H D+ E
Sbjct: 306 AVQQSPDHYACVVDLYGRAGLIEEAHCFVKTMPVKPHAGVWGALLNACRKHCHVDVGEIA 365
Query: 342 IKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLSV 400
K+ +R ++P+N G + L+ + ++W+ E V+ M + + K G S + SV
Sbjct: 366 AKELIR-IEPKNPGN-YVLLRNTLARGQQWDAVEDVQLSMRRKVIDKTAGCSWVEVDSV 422
>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
Length = 723
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 136/395 (34%), Positives = 221/395 (55%), Gaps = 7/395 (1%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV- 62
F+ M V D +++ L +C+ NL LH + K + +L+ Y
Sbjct: 223 FNCMLSDGVEPDEVAVIGALSACSKLKNLEFGRLLHLLVGKKRIQMTDKLVVTLIDMYAK 282
Query: 63 VTSFGFARKLFDELPE-RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
A+ +FD + + WN +I GY K G+V AR F++M R+V ++++MI
Sbjct: 283 CGDIAQAQAVFDAVGRGQKPEPWNVIIDGYCKLGHVDIARSLFDQMGARDVITFNSMITG 342
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+++G L+LF ++ G+ D T+ ++L+ C+ LG+ L G++ H I +
Sbjct: 343 YIHSGRLRDALQLFMQL-RRHGMRADNFTVVSLLTACASLGA--LPQGRALHASIEQRIV 399
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
E + + T LVDMY KCG + A VF M ER+V +W+A+I G A G DAL F
Sbjct: 400 EEDVYLVTALVDMYMKCGRVDEATAVFHRMGERDVHTWSAMIAGLAFNGMGMDALESFCQ 459
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M+ G +P +T+ VLTAC H+ L++EGR++F + + L P+I+HYGCM+DL ++G
Sbjct: 460 MKRDGFQPTSVTYIAVLTACSHSSLLNEGRQHFNEMRSLHKLHPQIEHYGCMIDLLARSG 519
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L+EA +++TM ++PN +IW S L+AC+ HK D+A + L++ PE D V+ +
Sbjct: 520 LLDEAMHLVQTMPMQPNAVIWASILSACRVHKNIDLARHAAEHLLKLA-PEED-AVYVQL 577
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
++Y + +W A+R+R LM Q V+K G S I+
Sbjct: 578 YNIYIDSRQWVEAKRIRMLMEEQGVKKTAGYSSIT 612
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 103/348 (29%), Positives = 164/348 (47%), Gaps = 43/348 (12%)
Query: 16 SFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHV-YVATSLLHEYVVTSFGF---ARK 71
+F+ + + C + LH+ L+ S VA L+H Y S G AR+
Sbjct: 102 AFTFHFVFRCCAAGAGAGLCRMLHAACLRTMLPSAARIVANPLIHMY--ASLGLTDDARR 159
Query: 72 LFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPG 131
FDE+P ++AV W T+I G + G + EAR + P RNV SW+++IA Y AG
Sbjct: 160 AFDEVPVKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADA 219
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
+ F M+S +G+ PD++ + LS CS L + L G+ H + K ++ +++ L
Sbjct: 220 VYCFNCMLS-DGVEPDEVAVIGALSACSKLKN--LEFGRLLHLLVGKKRIQMTDKLVVTL 276
Query: 192 VDMYAKCGFLKYALMVFEL--------------------------------MEERNVISW 219
+DMYAKCG + A VF+ M R+VI++
Sbjct: 277 IDMYAKCGDIAQAQAVFDAVGRGQKPEPWNVIIDGYCKLGHVDIARSLFDQMGARDVITF 336
Query: 220 TALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE 279
++I G H G DAL LF ++ G++ + T +LTAC G + +GR I E
Sbjct: 337 NSMITGYIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTACASLGALPQGRALHASI-E 395
Query: 280 EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
+ +E + +VD++ K G ++EA V M E +V W + +A
Sbjct: 396 QRIVEEDVYLVTALVDMYMKCGRVDEATAVFHRMG-ERDVHTWSAMIA 442
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 99/227 (43%), Gaps = 39/227 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+QLF Q+ R + +D+F+++ +L +C L LH+ I + VY+ T+L+
Sbjct: 353 LQLFMQLRRHGMRADNFTVVSLLTACASLGALPQGRALHASIEQRIVEEDVYLVTALVDM 412
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y+ A +F + ER+ TW+ MI G + +G +A + F +M
Sbjct: 413 YMKCGRVDEATAVFHRMGERDVHTWSAMIAGLAFNGMGMDALESFCQM------------ 460
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+G P +T AVL+ CSH LL H +++
Sbjct: 461 --------------------KRDGFQPTSVTYIAVLTACSH---SSLLNEGRQHFNEMRS 497
Query: 180 EWELNEQIA--TILVDMYAKCGFLKYALMVFELME-ERNVISWTALI 223
+L+ QI ++D+ A+ G L A+ + + M + N + W +++
Sbjct: 498 LHKLHPQIEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWASIL 544
>gi|297848568|ref|XP_002892165.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338007|gb|EFH68424.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 429
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 142/398 (35%), Positives = 227/398 (57%), Gaps = 11/398 (2%)
Query: 1 MQLFSQMHRQ-SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+ LF QMH ++P D+ LKSC + + +H+H +K F+S+ +V +LL
Sbjct: 32 LTLFRQMHSSFALPLDAHVFSLALKSCAAAFHPVLGGSVHAHSVKSNFLSNPFVGCALLD 91
Query: 60 EY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP-LRNVASWSA 117
Y S ARKLFDE+P+RNAV WN MI Y+ G + EA + +E M + N +S++A
Sbjct: 92 MYGKCLSVTHARKLFDEIPQRNAVVWNAMISHYTHCGKIQEAVELYEAMDVMPNESSFNA 151
Query: 118 MIAAYLNA--GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
+I ++ G+Y ++ +R+MI P+ +T+ A++S CS +G+ L+ K H +
Sbjct: 152 IIKGFVGTEDGSYK-AIEFYRKMIDFR-FKPNLITLLALVSACSAIGAFRLI--KEIHSY 207
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
+N E + Q+ + LV+ Y +CG + Y +VFE M +R+V++W++LI A G +E A
Sbjct: 208 AFRNLIEPHPQLKSGLVEAYGRCGCIVYVQLVFESMTDRDVVAWSSLISAYALHGDAESA 267
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
L F+ M++ V P+++ F VL AC H GL DE YFK + +Y L HY C+VD
Sbjct: 268 LRTFQEMESAKVTPDDIAFLNVLKACSHAGLADEALLYFKRMQGDYGLRASRDHYSCLVD 327
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
+ + G EEAY+VI+ M +P WG+ L AC+ + + ++AE K+ L ++PEN
Sbjct: 328 VLSRVGRFEEAYKVIQAMPEKPTAKTWGALLGACRNYGEVELAEIAAKE-LWKIEPENPA 386
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
+ L+ +Y + E AER+R M V+ + GSS
Sbjct: 387 N-YVLLGKIYMSVGRQEEAERLRMEMKESGVKVSPGSS 423
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 114/266 (42%), Gaps = 41/266 (15%)
Query: 114 SWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH 173
S + +++Y N G ++ L LFR+M S+ L D L C+ + ++G S H
Sbjct: 14 SLTKQLSSYANQGFHEQALTLFRQMHSSFALPLDAHVFSLALKSCA--AAFHPVLGGSVH 71
Query: 174 GFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE 233
VK+ + N + L+DMY KC + +A +F+ + +RN + W A+I H G +
Sbjct: 72 AHSVKSNFLSNPFVGCALLDMYGKCLSVTHARKLFDEIPQRNAVVWNAMISHYTHCGKIQ 131
Query: 234 DALSLFEMMQATGVKPNEMTFTGVLTACVHT--GLVDEGRKYFKMIDEEYD--------- 282
+A+ L+E M V PNE +F ++ V T G Y KMID +
Sbjct: 132 EAVELYEAMD---VMPNESSFNAIIKGFVGTEDGSYKAIEFYRKMIDFRFKPNLITLLAL 188
Query: 283 ------------------------LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPN 318
+EP Q +V+ +G+ G + V +M + +
Sbjct: 189 VSACSAIGAFRLIKEIHSYAFRNLIEPHPQLKSGLVEAYGRCGCIVYVQLVFESMT-DRD 247
Query: 319 VIIWGSFLAACKEHKQFDMAERVIKQ 344
V+ W S ++A H + A R ++
Sbjct: 248 VVAWSSLISAYALHGDAESALRTFQE 273
>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
cordifolium]
Length = 679
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 133/397 (33%), Positives = 224/397 (56%), Gaps = 37/397 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF++M + V D ++ +L +CTH N+ + +HS I GF S++ +
Sbjct: 195 LELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLV------ 248
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
N +I YSK G + A FE + ++V SW+ +I
Sbjct: 249 ------------------------NALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIG 284
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y + L +F+EM+ G TP+ +T+ ++L C+HLG++ + G+ H +I K
Sbjct: 285 GYAYINHHKEALLVFQEML-KLGETPNDVTMLSILPACAHLGAIDI--GRWIHVYIDKKL 341
Query: 181 WEL--NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ N + T L+DMYAKCG ++ A VF+ + +++ S A+I G A G ++ A L
Sbjct: 342 KGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDL 401
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
M+ G++P+++TF G+L+AC H GL D GRK FK + +Y +EP+++HYGCM+DL G
Sbjct: 402 LSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLG 461
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
++G +EA E+I +M +EP+ +IWGS L ACK HK ++ E +I Q L ++P+N G +
Sbjct: 462 RSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGE-LIAQKLMKIEPKNPGS-Y 519
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y + +W+ RVR L+ ++ ++K G S I
Sbjct: 520 VLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSI 556
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 111/359 (30%), Positives = 192/359 (53%), Gaps = 13/359 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+ M + +S++ + KSC +H+ ILK G ++V TSL+
Sbjct: 63 LNLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISM 122
Query: 61 YVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A K+FD R+ V++ MI GY+ GN+ +A+ F+ +P+++V SW+AMI
Sbjct: 123 YAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMI 182
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y G Y L+LF EM+ + + PD+ T+ VLS C+H G+V L G+ H +I +
Sbjct: 183 SGYAEIGRYKEALELFNEMMKMD-VKPDESTMATVLSTCTHSGNVEL--GRQIHSWIDNH 239
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ N ++ L+D+Y+KCG ++ A +FE ++ ++VISW LI G A+ + ++AL +F
Sbjct: 240 GFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVF 299
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD-LEPRIQHYGCMVDLFG 298
+ M G PN++T +L AC H G +D GR ID++ + ++D++
Sbjct: 300 QEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYA 359
Query: 299 KAGFLEEAYEVIRTMRLEP----NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353
K G +E A +V T+ + N +I+G F + FD+ R+ K ++P++
Sbjct: 360 KCGNIEAANQVFDTILNKSLSSCNAMIFG-FAMHGRADAAFDLLSRMKKDG---IEPDD 414
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 92/357 (25%), Positives = 158/357 (44%), Gaps = 77/357 (21%)
Query: 43 LKLGFISHVYVATSLLHEYVVTSF----GFARKLFDELPERNAVTWNTMIKGYSKSGNVC 98
+K+G + Y + LL ++T + +A +F + E N ++WNTMI+G++ S +
Sbjct: 1 IKIGLHNTNYALSKLLDFCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPI 60
Query: 99 EARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGC 158
A L L+ MIS GL+P+ T + C
Sbjct: 61 SA-------------------------------LNLYVYMIS-LGLSPNSYTFPFLFKSC 88
Query: 159 SHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVIS 218
+ S GK H I+K ++ + T L+ MYA+ G ++ A VF+ R+V+S
Sbjct: 89 AK--SKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVS 146
Query: 219 WTALICGSAHR--------------------------GYSE-----DALSLFEMMQATGV 247
+TA+I G A R GY+E +AL LF M V
Sbjct: 147 YTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDV 206
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
KP+E T VL+ C H+G V+ GR+ ID + ++ ++DL+ K G +E A+
Sbjct: 207 KPDESTMATVLSTCTHSGNVELGRQIHSWID-NHGFGSNLKLVNALIDLYSKCGEMERAH 265
Query: 308 EVIRTMRLEPNVIIWGSFL---AACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
+ ++ + +VI W + + A HK+ A V ++ L++ + ND + +++
Sbjct: 266 GLFEGLQYK-DVISWNTLIGGYAYINHHKE---ALLVFQEMLKLGETPNDVTMLSIL 318
>gi|222623741|gb|EEE57873.1| hypothetical protein OsJ_08529 [Oryza sativa Japonica Group]
Length = 500
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 216/390 (55%), Gaps = 33/390 (8%)
Query: 12 VPSDSFSILHILKSCTHFNNLTVIHHL----HSHILKLGFISHVYVATSLLHEYVVTSFG 67
VP+D ++L +L +C + + L H+ +LKL F SH+ ++T L+ Y +
Sbjct: 98 VPND-VTLLTVLSACADSPSSPLARRLALSVHARVLKL-FPSHLLLSTCLVRFYFASRLP 155
Query: 68 -FARKLFDELPERNAVTWNTMIKG-YSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
A +LFD +P R+AVT+NT+I G ++ +G V A + F+ MP + SW+A+I +
Sbjct: 156 HLALQLFDAMPVRSAVTYNTVISGPHAGTGLVAAAFEVFDGMPAPDKVSWTALIDGCVKN 215
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
G +D + FR S G +G H S L E N
Sbjct: 216 GRHDEAIDCFRRHAS-----------GRCRAGLRHADSRHL------------RGLERNV 252
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
+IA L+DMYA+CG ++ A VF M +R V+SW ++I G A G DA+ FE M+
Sbjct: 253 RIANSLIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRRE 312
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305
G KP+ +TFTGVLTAC H GL DEG +Y+ ++ Y + R++HYGC+VDL G++G LEE
Sbjct: 313 GFKPDAVTFTGVLTACSHGGLTDEGLRYYDLMRPNYGIAARMEHYGCVVDLLGRSGQLEE 372
Query: 306 AYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365
A V+ TM + PN ++ G+F A C+ H MAE++++ L + P D + L+ ++Y
Sbjct: 373 AMRVVTTMPMRPNEVVLGAFFAGCRMHGDVGMAEQLMQHLLEL-DPGGDAN-YVLLSNIY 430
Query: 366 TMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
KW+GA +VR LM + +RK G S +
Sbjct: 431 AAVGKWDGAGKVRSLMKARGLRKRPGYSAV 460
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 102/234 (43%), Gaps = 24/234 (10%)
Query: 111 NVASWSAMIAAYLNAG-AYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL-- 167
+VASW++ IA G L + S P+ +T+ VLS C+ S L
Sbjct: 63 DVASWTSAIARPAKQGDLPAAAAALSAMLSSPAAPVPNDVTLLTVLSACADSPSSPLARR 122
Query: 168 MGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGS- 226
+ S H ++K + + ++T LV Y AL +F+ M R+ +++ +I G
Sbjct: 123 LALSVHARVLK-LFPSHLLLSTCLVRFYFASRLPHLALQLFDAMPVRSAVTYNTVISGPH 181
Query: 227 AHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG------------RKYF 274
A G A +F+ M A P+++++T ++ CV G DE R
Sbjct: 182 AGTGLVAAAFEVFDGMPA----PDKVSWTALIDGCVKNGRHDEAIDCFRRHASGRCRAGL 237
Query: 275 KMIDEEY--DLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
+ D + LE ++ ++D++ + G +E A +V MR V+ W S +
Sbjct: 238 RHADSRHLRGLERNVRIANSLIDMYARCGQVELARQVFSGMRKR-TVVSWNSMI 290
>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Vitis vinifera]
Length = 709
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 132/395 (33%), Positives = 224/395 (56%), Gaps = 35/395 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ + +M + DSF++ +L + NL +H + ++ G+ + V++ +SL
Sbjct: 221 LMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSL--- 277
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
I Y+K V ++ F +P + SW+++IA
Sbjct: 278 ---------------------------IDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIA 310
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
+ G +D GLK F++M+ + + P+ ++ +++ C+HL ++ L GK HG+I+++
Sbjct: 311 GCVQNGMFDEGLKFFQQMLIAK-IKPNHVSFSSIMPACAHLTTLHL--GKQLHGYIIRSR 367
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
++ N IA+ LVDMYAKCG ++ A +F+ ME +++SWTA+I G A G++ DA+SLF+
Sbjct: 368 FDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFK 427
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ GVKPN + F VLTAC H GLVDE KYF + ++Y + P ++HY + DL G+
Sbjct: 428 RMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRV 487
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G LEEAYE I M +EP +W + LAAC+ HK ++AE+V K+ L V P+N G + L
Sbjct: 488 GRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKK-LFTVDPQNIGA-YVL 545
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y+ +W+ A ++R M ++ ++K S I
Sbjct: 546 LSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWI 580
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 96/357 (26%), Positives = 167/357 (46%), Gaps = 17/357 (4%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ F QM D +LKSCT +L +H I++LG +Y +L++
Sbjct: 91 LSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNM 150
Query: 61 YV----VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
Y + +K+FDE T + K +S + R FE MP R++ SW+
Sbjct: 151 YSKFWSLEEVNTYKKVFDE-----GKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWN 205
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
+I+ G ++ L + REM N L PD T+ +VL + V LL GK HG+
Sbjct: 206 TVISGNAQNGMHEDALMMVREM-GNADLRPDSFTLSSVLPIFAEY--VNLLKGKEIHGYA 262
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
++N ++ + I + L+DMYAKC + + VF ++ + + ISW ++I G G ++ L
Sbjct: 263 IRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGL 322
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVD 295
F+ M +KPN ++F+ ++ AC H + G++ + +I +D I +VD
Sbjct: 323 KFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIA--SALVD 380
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ-FDMAERVIKQALRMVKP 351
++ K G + A + M L +++ W + + H +D + + VKP
Sbjct: 381 MYAKCGNIRTARWIFDKMELY-DMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKP 436
>gi|224136906|ref|XP_002322445.1| predicted protein [Populus trichocarpa]
gi|222869441|gb|EEF06572.1| predicted protein [Populus trichocarpa]
Length = 531
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 140/430 (32%), Positives = 229/430 (53%), Gaps = 43/430 (10%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
SQM +P F+ +LKSC F + +H I K+ F+ +YV SL+H Y
Sbjct: 63 DFLSQMEDGFLPY-MFTFPAVLKSCAKFMAVDEGRQVHGVIAKMDFVCDIYVENSLVHFY 121
Query: 62 -VVTSFGFARKLFDELPERNAVTW----------------------------------NT 86
V S A ++FDE+ R+AV+W N
Sbjct: 122 SVCGSLDDASRVFDEMLVRDAVSWTGVIYPGIKGYLILGKGIHGLIIERGFGLGLEVSNA 181
Query: 87 MIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
++ Y K ++ E + F+ +P +++ SW+++I + L+LF + + + G+ P
Sbjct: 182 LMDMYVKCESLPEEKQVFDELPEKDIVSWTSIICGMVQCKFPKEVLELFCD-VQSSGIEP 240
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
D + + +VLS + G+ L G+ +I + + QI T +VDMYAKCG ++ A+
Sbjct: 241 DGIILTSVLSARASPGA--LDYGRLVREYIDHKAIKWDIQIGTAVVDMYAKCGCIEMAMQ 298
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
+F +M +NV++W A++ G A G+ + AL LFE M G++PNE+TF LTAC H G
Sbjct: 299 IFNVMPHKNVLTWNAMLNGLAMHGHGQKALQLFEEMVREGMRPNEVTFLVTLTACCHCGF 358
Query: 267 VDEGRKYFK-MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSF 325
V EGR+YF M ++Y+L PR++HYGCMVDL +AG L+EA E+ + M + P+V I G+
Sbjct: 359 VGEGRRYFHWMKSQQYNLPPRLEHYGCMVDLLCRAGLLDEALELTKAMPMLPDVRIMGAL 418
Query: 326 LAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQN 385
L+ CK + ++ ++ + + D GV+ L+ ++ +N++W R+R+LM
Sbjct: 419 LSTCKANGNVELPREILDRLVEF--DSRDSGVYVLLSNILAINQRWADVTRIRRLM-KMG 475
Query: 386 VRKARGSSVI 395
+ K GSSVI
Sbjct: 476 IEKTPGSSVI 485
>gi|356518836|ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 568
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 141/396 (35%), Positives = 215/396 (54%), Gaps = 40/396 (10%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LFS MHR +VP D F+ ILKS + N H +H+ +LKLGF S++YV
Sbjct: 83 LALFSHMHRTNVPFDHFTFPLILKS-SKLNP----HCIHTLVLKLGFHSNIYVQ------ 131
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
N +I Y SG++ + F+ MP R++ SWS++I+
Sbjct: 132 ------------------------NALINSYGTSGSLHASLKLFDEMPRRDLISWSSLIS 167
Query: 121 AYLNAGAYDPGLKLFREM-ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ G D L LF++M + + PD + + +V+S S LG+ L +G H FI +
Sbjct: 168 CFAKRGLPDEALTLFQQMQLKESDILPDGVVMLSVISAVSSLGA--LELGIWVHAFISRI 225
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
L + + L+DMY++CG + ++ VF+ M RNV++WTALI G A G +AL F
Sbjct: 226 GVNLTVSLGSALIDMYSRCGDIDRSVKVFDEMPHRNVVTWTALINGLAVHGRGREALEAF 285
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M +G+KP+ + F GVL AC H GLV+EGR+ F + EY +EP ++HYGCMVDL G+
Sbjct: 286 YDMVESGLKPDRIAFMGVLVACSHGGLVEEGRRVFSSMWSEYGIEPALEHYGCMVDLLGR 345
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG + EA++ + MR+ PN +IW + L AC H +AE+ K+ ++ + P +DG +
Sbjct: 346 AGMVLEAFDFVEGMRVRPNSVIWRTLLGACVNHNLLVLAEKA-KERIKELDPHHDGD-YV 403
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ + Y W E VR M + K G S++
Sbjct: 404 LLSNAYGGVGNWVKKEGVRNSMRESKIVKEPGLSLV 439
>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
Length = 657
Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 134/396 (33%), Positives = 222/396 (56%), Gaps = 39/396 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTH----FNNLTVIHHLHSHILKLGFISHVYVATS 56
+ L+ +M+R V SD F+ ++LK+C ++LT +H+H+ + G+ SHVY+ T
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMT- 221
Query: 57 LLHEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
T++ Y++ G V A F MP+RNV SWS
Sbjct: 222 -----------------------------TLVDMYARFGCVDYASYVFNGMPVRNVVSWS 252
Query: 117 AMIAAYLNAGAYDPGLKLFREMIS-NEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
AMIA Y G L+ FREM++ + +P+ +T+ +VL C+ L + L G+ HG+
Sbjct: 253 AMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAA--LEQGRLIHGY 310
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
I++ + + + LV MY +CG L VF+ M +R+V+SW +LI GY A
Sbjct: 311 ILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKA 370
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
+ +FE M A G P +TF VL AC H GLV+EG++ F+ + ++ ++P+++HY CMVD
Sbjct: 371 IQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVD 430
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
L G+A L+EA ++++ MR EP +WGS L +C+ H ++AER ++ L ++P+N G
Sbjct: 431 LLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRR-LFALEPKNAG 489
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARG 391
+ L+ D+Y + W+ +RV+KL+ ++ ++K G
Sbjct: 490 N-YVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPG 524
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 99/349 (28%), Positives = 153/349 (43%), Gaps = 38/349 (10%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
Q + ++S PS L IL C H ++L+ +H HIL G ++AT L
Sbjct: 64 QALRVLSQESSPSQQTYELLIL-CCGHRSSLSDGLRVHRHILDNGSDQDPFLATKL---- 118
Query: 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
I YS G+V AR F++ R + W+A+ A
Sbjct: 119 --------------------------IGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRA 152
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGC--SHLGSVGLLMGKSAHGFIVKN 179
AG + L L+ +M + G+ D+ T VL C S + L GK H + +
Sbjct: 153 LTLAGHGEEVLGLYWKM-NRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRR 211
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + I T LVDMYA+ G + YA VF M RNV+SW+A+I A G + +AL F
Sbjct: 212 GYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTF 271
Query: 240 -EMMQAT-GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
EMM T PN +T VL AC +++GR I L+ + +V ++
Sbjct: 272 REMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRR-GLDSILPVISALVTMY 330
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQAL 346
G+ G L+ V M + +V+ W S +++ H A ++ ++ L
Sbjct: 331 GRCGKLDVGQRVFDRMH-DRDVVSWNSLISSYGVHGYGRKAIQIFEEML 378
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 101/230 (43%), Gaps = 9/230 (3%)
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
LK ++S E +P Q T ++ C H S L G H I+ N + + +AT L
Sbjct: 62 LKQALRVLSQES-SPSQQTYELLILCCGHRSS--LSDGLRVHRHILDNGSDQDPFLATKL 118
Query: 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE 251
+ MY+ G + YA VF+ +R + W AL G+ E+ L L+ M GV+ +
Sbjct: 119 IGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDR 178
Query: 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM---VDLFGKAGFLEEAYE 308
T+T VL ACV + + K I H M VD++ + G ++ A
Sbjct: 179 FTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASY 238
Query: 309 VIRTMRLEPNVIIWGSFLAA-CKEHKQFDMAERVIKQALRMVKPENDGGV 357
V M + NV+ W + +A K K F+ A R ++ + K + V
Sbjct: 239 VFNGMPVR-NVVSWSAMIACYAKNGKAFE-ALRTFREMMTETKDSSPNSV 286
>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 118/327 (36%), Positives = 200/327 (61%), Gaps = 6/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR+LFD++P RN +WNTM+ GY++ GN+ +A+ F+ MP R+ SW+AMI+ Y +G
Sbjct: 327 ARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQS 386
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ L LF +M + G+ ++ + LS C+ + + L +GK HG +VK ++
Sbjct: 387 EEALHLFIKMKRDGGIL-NRSALACALSSCAEIAA--LELGKQLHGRLVKAGFQTGYIAG 443
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+ MY KCG ++ A VFE + E++++SW +I G A G+ ++AL+LFE M+ T +K
Sbjct: 444 NALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IK 502
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+++T GVL+AC HTG VD+G +YF + + Y + +HY CM+DL G+AG L+EA
Sbjct: 503 PDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALN 562
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
++++M P+ WG+ L A + H ++ E+ ++ M +P+N G++ L+ +LY +
Sbjct: 563 LMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEM-EPDN-SGMYVLLSNLYAAS 620
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
+W +R M ++ V+K G S +
Sbjct: 621 GRWREVREMRSKMRDKGVKKVPGYSWV 647
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/336 (23%), Positives = 157/336 (46%), Gaps = 57/336 (16%)
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
F ARK+F+++P+R+ ++WN M+ GY K+GN+ AR F +MP ++V SW+AM++ +
Sbjct: 107 FDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQN 166
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV------------------GLL 167
G + K+F +M L ++++ +LS G + L
Sbjct: 167 GFVEEARKIFDQM-----LVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCL 221
Query: 168 MGKSAHGFIVKNEWE----------LNEQIA-TILVDMYAKCGFLKYALMVFELMEERNV 216
MG G++ K + + ++I+ I++ YA+ G L A +FE + R+V
Sbjct: 222 MG----GYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDV 277
Query: 217 ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKM 276
+WTA++ G G ++A +FE M + NE+++ ++ V + +++ R+ F
Sbjct: 278 FAWTAMVSGFVQNGMLDEATRIFEEMP----EKNEVSWNAMIAGYVQSQQIEKARELFDQ 333
Query: 277 IDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFD 336
+ + MV + + G +++A + M + + I W + ++ + Q +
Sbjct: 334 MPSR-----NTSSWNTMVTGYAQCGNIDQAKILFDEMP-QRDCISWAAMISGYAQSGQSE 387
Query: 337 MAERVIKQALRMVKPENDGGVFT---LICDLYTMNE 369
A + +K + DGG+ L C L + E
Sbjct: 388 EALHLF------IKMKRDGGILNRSALACALSSCAE 417
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 130/276 (47%), Gaps = 21/276 (7%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A +F+ + R+ VT+N MI GY + AR FE+MP R++ SW+ M++ Y+ G
Sbjct: 79 ALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNL 138
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
LF +M D ++ A+LSG + G V K +VKNE N
Sbjct: 139 SAARALFNQMPEK-----DVVSWNAMLSGFAQNGFVEEAR-KIFDQMLVKNEISWNG--- 189
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+ Y + G ++ A +F+ + ++SW L+ G + +DA SLF+ M
Sbjct: 190 --LLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVR--- 244
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
+++++ ++T GL+ E R+ F EE + + + MV F + G L+EA
Sbjct: 245 -DKISWNIMITGYAQNGLLSEARRLF----EELPIRD-VFAWTAMVSGFVQNGMLDEATR 298
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
+ M E N + W + +A + +Q + A + Q
Sbjct: 299 IFEEMP-EKNEVSWNAMIAGYVQSQQIEKARELFDQ 333
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 102/248 (41%), Gaps = 42/248 (16%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF +M R + ++ L SC L + LH ++K GF + +LL
Sbjct: 390 LHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAM 449
Query: 61 Y-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y S A +F+++ E++ V+WNTMI GY++ G EA FE M +
Sbjct: 450 YGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMT--------- 500
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ PD +T+ VLS CSH G V G + +N
Sbjct: 501 ------------------------IKPDDVTLVGVLSACSHTGFVD--KGMEYFNSMYQN 534
Query: 180 EW-ELNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSE---- 233
N + T ++D+ + G L AL + + M + +W AL+ S G +E
Sbjct: 535 YGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEK 594
Query: 234 DALSLFEM 241
A +FEM
Sbjct: 595 AAEKVFEM 602
>gi|108862694|gb|ABA98288.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 572
Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 134/422 (31%), Positives = 227/422 (53%), Gaps = 43/422 (10%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGF-ISHVYVATSLLH 59
+ LF+ M ++F++ ++K C+ + +H+ + K G S V+V +LL
Sbjct: 102 VALFALMLWSGPRPNAFTVTSVIKCCSKVRAVHEGLQVHAFLAKAGLGCSSVHVGAALLD 161
Query: 60 EY-VVTSFGFARKLFDELP-------------------------------ERNAVTWNTM 87
Y + G AR++FDE+P ER+ ++WNT+
Sbjct: 162 LYGNIGLVGDARRVFDEMPVKNVVVGNTMVACNVRAGDMGAAREVFDGMAERDPISWNTL 221
Query: 88 IKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD 147
+ GY G+ R+ F+ M +RNV SW+ MIAA G+ +K+F M + G PD
Sbjct: 222 MSGYLHLGDTATVRELFDEMTVRNVNSWNTMIAACSEEGSLADTVKVFNRMRAT-GFEPD 280
Query: 148 QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMV 207
T+ ++S C+ LGS L + HG + K+ E+N + L+DMYAKCG + A +
Sbjct: 281 AATMAVLMSACAQLGS--LTIAGQVHGLLQKSCVEMNCHVQNSLIDMYAKCGCISQAQFL 338
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
F ++ +S+ +I A G++ DAL LF M +G++P+ +TF GVL+AC H GLV
Sbjct: 339 FTETYPKDTVSYNVMIIAFAQHGHARDALDLFNAMVDSGLQPDAVTFLGVLSACAHAGLV 398
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
+ G+ YF+++ Y ++ HY C+VDL+G+AG +EEA+ ++TM ++P+ +WG+ L
Sbjct: 399 EYGKNYFELMKTTYAVQQSPDHYACVVDLYGRAGLIEEAHCFVKTMPVKPHAGVWGALLN 458
Query: 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERV-----RKLML 382
AC++H D+ E K+ +R ++P+N G + L+ + ++W+ E V RKL+L
Sbjct: 459 ACRKHCHVDVGEIAAKELIR-IEPKNPGN-YVLLRNTLARGQQWDAVEDVQLSMRRKLLL 516
Query: 383 NQ 384
+
Sbjct: 517 SD 518
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 24/174 (13%)
Query: 188 ATILVDMYAKCGFLKYALMVFELME--ERNVISWTALICGSAHRG---------YSEDAL 236
A V + A ++A VF+ + NV WTA I A + +A+
Sbjct: 43 ARAAVALVASSSSPRHARAVFDSVPAASANVYLWTATISAYARHASSSSSHALEVAGEAV 102
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG-CMVD 295
+LF +M +G +PN T T V+ C V EG + + + L H G ++D
Sbjct: 103 ALFALMLWSGPRPNAFTVTSVIKCCSKVRAVHEGLQVHAFL-AKAGLGCSSVHVGAALLD 161
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK--------EHKQFD-MAER 340
L+G G + +A V M ++ NV++ G+ + AC + FD MAER
Sbjct: 162 LYGNIGLVGDARRVFDEMPVK-NVVV-GNTMVACNVRAGDMGAAREVFDGMAER 213
>gi|357447703|ref|XP_003594127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124365519|gb|ABN09753.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355483175|gb|AES64378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 727
Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 133/396 (33%), Positives = 224/396 (56%), Gaps = 8/396 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++++ M + + I++++ +C + LH ++K GF + ++ T++++
Sbjct: 302 LEIYRAMLQTGHGPNEVMIVNLVSACGRGTAIVDGWQLHGTVVKRGFDCYNFIQTTIIYF 361
Query: 61 YVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A F+ + + +WN + G+ K+G + A F++M +R+V SWS MI
Sbjct: 362 YAACGMMDLACLQFEVGVKDHLESWNALTAGFIKNGMMDHALKTFDKMHVRDVFSWSTMI 421
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y + L+LF +M++ G+ P+++T+ +V S + LG+ L GK AH ++
Sbjct: 422 SGYAQSEHPKMALELFHKMLAG-GIKPNEVTMVSVFSAIATLGT--LQEGKLAHEYMRSE 478
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELM--EERNVISWTALICGSAHRGYSEDALS 237
N+ + L+DMYAKCG + AL F + E +V W A+ICG A G++ L
Sbjct: 479 SIPFNDNLRAALIDMYAKCGSINSALQFFNQIRDEVSSVSPWNAIICGLASHGHASMCLE 538
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
+F MQ +KPN +TF GVL+AC H GLV+ G++ FK + Y++EP I+HYGCM+D+
Sbjct: 539 VFSDMQRFHIKPNPITFIGVLSACCHAGLVESGKRIFKTMKSAYNVEPDIKHYGCMIDIL 598
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
G+AG LEEA E+IR+M +E +++IWG+ LAAC+ H ++ ER + R+ P + GG
Sbjct: 599 GRAGLLEEAEEMIRSMPMEADIVIWGTLLAACRTHGNVNIGERAAENLARLA-PSHGGGK 657
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
L+ ++Y KWE VR +M Q + + G S
Sbjct: 658 -VLLSNIYANAGKWEEVSFVRSVMQGQTMDREPGYS 692
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 110/387 (28%), Positives = 186/387 (48%), Gaps = 40/387 (10%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+++F M V + ++++++ +C+H + +H ++K+ + V V+T+L+H
Sbjct: 170 LEVFKDMRSCGVVPNDLTLVNVISACSHLGEVLNCRMVHGLVVKMFVVGLVIVSTNLMHA 229
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + S AR+LFDE+PERN VTWN M+ GY+K+G V EAR+ F+ + ++V SW MI
Sbjct: 230 YCLCSGVREARRLFDEMPERNLVTWNVMLNGYAKTGLVDEARELFDGICDKDVISWGTMI 289
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y+ G L+++R M+ G P+++ I ++S C ++ G HG +VK
Sbjct: 290 DGYIQKGRLREALEIYRAMLQT-GHGPNEVMIVNLVSACGR--GTAIVDGWQLHGTVVKR 346
Query: 180 EWELNEQIATILVDMYAKC--------------------------GFLK-----YALMVF 208
++ I T ++ YA C GF+K +AL F
Sbjct: 347 GFDCYNFIQTTIIYFYAACGMMDLACLQFEVGVKDHLESWNALTAGFIKNGMMDHALKTF 406
Query: 209 ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
+ M R+V SW+ +I G A + + AL LF M A G+KPNE+T V +A G +
Sbjct: 407 DKMHVRDVFSWSTMISGYAQSEHPKMALELFHKMLAGGIKPNEVTMVSVFSAIATLGTLQ 466
Query: 269 EGR-KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE-PNVIIWGSFL 326
EG+ + M E ++ ++D++ K G + A + +R E +V W + +
Sbjct: 467 EGKLAHEYMRSESIPFNDNLR--AALIDMYAKCGSINSALQFFNQIRDEVSSVSPWNAII 524
Query: 327 AACKEHKQFDMAERVIKQALRM-VKPE 352
H M V R +KP
Sbjct: 525 CGLASHGHASMCLEVFSDMQRFHIKPN 551
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 115/457 (25%), Positives = 204/457 (44%), Gaps = 72/457 (15%)
Query: 1 MQLFSQMHRQSVPSDS-FSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+ +F+ DS +++ LKSC+ + ++ +HS I KLG + ++ SL++
Sbjct: 37 IHIFTNARNHQNHHDSELALVSALKSCSSLSFISQGRQIHSLIFKLGLHFNTFIQNSLIN 96
Query: 60 EYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y A+ LFD ++V+ N M+ GY ++G + AR F+ MP + S++ M
Sbjct: 97 MYAKCGDIKNAQLLFDGFATLDSVSCNIMVSGYVRNGQIDNARKLFDVMPNKGCVSYTTM 156
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I ++ G + L++F++M S G+ P+ +T+ V+S CSHLG V L + HG +VK
Sbjct: 157 IMGFVQNGFFREALEVFKDMRSC-GVVPNDLTLVNVISACSHLGEV--LNCRMVHGLVVK 213
Query: 179 ------------------------------NEW-ELNEQIATILVDMYAKCGFLKYALMV 207
+E E N ++++ YAK G + A +
Sbjct: 214 MFVVGLVIVSTNLMHAYCLCSGVREARRLFDEMPERNLVTWNVMLNGYAKTGLVDEAREL 273
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH-TGL 266
F+ + +++VISW +I G +G +AL ++ M TG PNE+ +++AC T +
Sbjct: 274 FDGICDKDVISWGTMIDGYIQKGRLREALEIYRAMLQTGHGPNEVMIVNLVSACGRGTAI 333
Query: 267 VDEGRKYFKMIDEEYDLEPRIQ------HYGC-MVDL----------------------F 297
VD + + ++ +D IQ + C M+DL F
Sbjct: 334 VDGWQLHGTVVKRGFDCYNFIQTTIIYFYAACGMMDLACLQFEVGVKDHLESWNALTAGF 393
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALR-MVKPENDG- 355
K G ++ A + M + +V W + ++ + + MA + + L +KP
Sbjct: 394 IKNGMMDHALKTFDKMHVR-DVFSWSTMISGYAQSEHPKMALELFHKMLAGGIKPNEVTM 452
Query: 356 -GVFTLICDLYTMNEKWEGAERVR--KLMLNQNVRKA 389
VF+ I L T+ E E +R + N N+R A
Sbjct: 453 VSVFSAIATLGTLQEGKLAHEYMRSESIPFNDNLRAA 489
>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
Length = 679
Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 132/395 (33%), Positives = 224/395 (56%), Gaps = 35/395 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ + +M + DSF++ +L + NL +H + ++ G+ + V++ +SL
Sbjct: 181 LMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSL--- 237
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
I Y+K V ++ F +P + SW+++IA
Sbjct: 238 ---------------------------IDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIA 270
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
+ G +D GLK F++M+ + + P+ ++ +++ C+HL + L +GK HG+I+++
Sbjct: 271 GCVQNGMFDEGLKFFQQMLIAK-IKPNHVSFSSIMPACAHLTT--LHLGKQLHGYIIRSR 327
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
++ N IA+ LVDMYAKCG ++ A +F+ ME +++SWTA+I G A G++ DA+SLF+
Sbjct: 328 FDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFK 387
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ GVKPN + F VLTAC H GLVDE KYF + ++Y + P ++HY + DL G+
Sbjct: 388 RMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRV 447
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G LEEAYE I M +EP +W + LAAC+ HK ++AE+V K+ L V P+N G + L
Sbjct: 448 GRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKK-LFTVDPQNIGA-YVL 505
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y+ +W+ A ++R M ++ ++K S I
Sbjct: 506 LSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWI 540
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 139/284 (48%), Gaps = 13/284 (4%)
Query: 70 RKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYD 129
+K+FDE T + K +S + R FE MP R++ SW+ +I+ G ++
Sbjct: 124 KKVFDE-----GKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHE 178
Query: 130 PGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIAT 189
L + REM N L PD T+ +VL + V LL GK HG+ ++N ++ + I +
Sbjct: 179 DALMMVREM-GNADLRPDSFTLSSVLPIFAEY--VNLLKGKEIHGYAIRNGYDADVFIGS 235
Query: 190 ILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP 249
L+DMYAKC + + VF ++ + + ISW ++I G G ++ L F+ M +KP
Sbjct: 236 SLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKP 295
Query: 250 NEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
N ++F+ ++ AC H + G++ + +I +D I +VD++ K G + A
Sbjct: 296 NHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIA--SALVDMYAKCGNIRTARW 353
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQ-FDMAERVIKQALRMVKP 351
+ M L +++ W + + H +D + + VKP
Sbjct: 354 IFDKMELY-DMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKP 396
>gi|357507475|ref|XP_003624026.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124360495|gb|ABN08505.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499041|gb|AES80244.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 646
Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 133/402 (33%), Positives = 232/402 (57%), Gaps = 21/402 (5%)
Query: 1 MQLFSQM-HRQSVPSDSFSILHILKSCTHFNNL----TVIHHLHSHILKLGFISHVYVAT 55
++LF+ M +V D + + ++ SC+ + +++ L + GF + +V T
Sbjct: 251 IRLFNDMLSPGNVQPDETTWVTVISSCSSLGDPCLSESIVRKLDDTV---GFRPNYFVKT 307
Query: 56 SLLHEYV-VTSFGFARKLFDEL---PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRN 111
+LL + + A K+F++L R++V WN MI Y++ G++ AR F++MP R+
Sbjct: 308 ALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSARHLFDKMPQRD 367
Query: 112 VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKS 171
SW++MIA Y G +KLF EMIS+E PD++T+ +V S C HLG +GL G
Sbjct: 368 TVSWNSMIAGYTQNGESVKAIKLFEEMISSEDSKPDEVTMVSVFSACGHLGELGL--GNW 425
Query: 172 AHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGY 231
A + +N +++ + L+ MY++CG ++ A+++F+ M R+++S+ LI G A G+
Sbjct: 426 AVSILKENHIQISISVYNSLISMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGH 485
Query: 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG 291
+++ L M+ G++P+ +T+ +LTAC H GL+ EG++ F+ I P + HY
Sbjct: 486 GMESIELLLKMKEDGIEPDRITYIAILTACSHAGLLGEGQRLFESIK-----FPDVDHYA 540
Query: 292 CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351
CM+D+ G+AG LEEA ++I++M +EP+ I+GS L A HKQ ++ E + + V+P
Sbjct: 541 CMIDMLGRAGRLEEAMKLIQSMPMEPHAGIYGSLLNATSIHKQVELGELAAAKLFK-VEP 599
Query: 352 ENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
N G + L+ ++Y +W+ ++VR M Q V+K G S
Sbjct: 600 HNSGN-YVLLSNIYASAGRWKDGDKVRDTMRKQGVKKTTGLS 640
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 104/389 (26%), Positives = 178/389 (45%), Gaps = 83/389 (21%)
Query: 40 SHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFDELPER------------------- 79
+H+LK G+ YV +L Y FARKLFDE+P+R
Sbjct: 123 AHVLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEE 182
Query: 80 ----------------NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL 123
N +TW TMI G++K GN+ AR +F++MP R+V SW+AM++ Y
Sbjct: 183 EASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYA 242
Query: 124 NAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE--- 180
GA + ++LF +M+S + PD+ T V+S CS LG L + + K +
Sbjct: 243 QGGAPEETIRLFNDMLSPGNVQPDETTWVTVISSCSSLGDPCL-----SESIVRKLDDTV 297
Query: 181 -WELNEQIATILVDMYAKCGFLKYALMVFEL----------------------------- 210
+ N + T L+DM+AKCG L+ A +FE
Sbjct: 298 GFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAR 357
Query: 211 -----MEERNVISWTALICGSAHRGYSEDALSLF-EMMQATGVKPNEMTFTGVLTACVHT 264
M +R+ +SW ++I G G S A+ LF EM+ + KP+E+T V +AC H
Sbjct: 358 HLFDKMPQRDTVSWNSMIAGYTQNGESVKAIKLFEEMISSEDSKPDEVTMVSVFSACGHL 417
Query: 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324
G + G ++ E + ++ I Y ++ ++ + G +++A + + M +++ + +
Sbjct: 418 GELGLGNWAVSILKENH-IQISISVYNSLISMYSRCGSMQDAVLIFQEMATR-DLVSYNT 475
Query: 325 FLAACKEHKQ-FDMAERVIKQALRMVKPE 352
++ EH + E ++K ++P+
Sbjct: 476 LISGFAEHGHGMESIELLLKMKEDGIEPD 504
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 113/250 (45%), Gaps = 16/250 (6%)
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
+ LF+ M+ + + P+ ++ GS +L AH ++K+ ++ + + +
Sbjct: 88 VSLFKHMLRHCNIKPNTSFYSVMMKSA---GSESMLF--LAH--VLKSGYDRDHYVRNGI 140
Query: 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE 251
+ +YAK G +++A +F+ M +R V W +I G G E+A +LF +M + N
Sbjct: 141 LGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEISRNV 200
Query: 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR 311
+T+T ++T G + R YF + E + + M+ + + G EE +
Sbjct: 201 ITWTTMITGHAKKGNLKTARMYFDKMPER-----SVVSWNAMLSGYAQGGAPEETIRLFN 255
Query: 312 TM----RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM 367
M ++P+ W + +++C ++E ++++ V + V T + D++
Sbjct: 256 DMLSPGNVQPDETTWVTVISSCSSLGDPCLSESIVRKLDDTVGFRPNYFVKTALLDMHAK 315
Query: 368 NEKWEGAERV 377
E A ++
Sbjct: 316 CGNLEAAHKI 325
>gi|242061934|ref|XP_002452256.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
gi|241932087|gb|EES05232.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
Length = 590
Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 139/358 (38%), Positives = 203/358 (56%), Gaps = 12/358 (3%)
Query: 44 KLGFISHVYVATSLLHEYVVTS-FGFARKLFDE--LPERNAVTWNTMIKGYSKSGNVCEA 100
K G ++H V LL Y AR++FD + V+WNTM+ GY K G++ A
Sbjct: 109 KCGALAHPVVTNCLLKLYCALGMLPDARRVFDTSGATALDVVSWNTMVSGYGKCGDLEAA 168
Query: 101 RDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSH 160
R+ F RMP R + SWSAMI A + G + L++F +M N G PD + + +VL C+H
Sbjct: 169 REVFVRMPERGLVSWSAMIDACVRTGEFSEALRVFDQMTGN-GFKPDAVVLVSVLKTCAH 227
Query: 161 LGSVGLLMGKSAHGFIVKNEW---ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVI 217
LG+ L G+ H F+ N + T LVDMY KCG + A VF+ ++ +V+
Sbjct: 228 LGA--LERGRWVHRFLKAERLGGRPGNVMLETALVDMYCKCGCMNEAWWVFDGVQSHDVV 285
Query: 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI 277
W A+I G A G+ + AL LF M G PNE TF L AC+HTG VDEG F+ +
Sbjct: 286 LWNAMIGGLAMNGHGKRALELFRRMLDKGFVPNESTFVVALCACIHTGRVDEGEDVFRSM 345
Query: 278 DEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDM 337
++ +EPR +HYGC+ DL G+AG LEEA V+ M +EP+ WG+ +++C H +
Sbjct: 346 -RDHGIEPRREHYGCLADLLGRAGLLEEAEGVLLDMPMEPHASQWGALMSSCLMHNNVGV 404
Query: 338 AERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
ERV K+ + + +P+ DGG + + +LY +N WE A+ +RK+M + +K G S I
Sbjct: 405 GERVGKKLIEL-EPD-DGGRYVALFNLYAVNGLWEDAKALRKMMEERGAKKETGLSFI 460
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 111/260 (42%), Gaps = 19/260 (7%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKL----GFISHVYVATS 56
+++F QM D+ ++ +LK+C H L +H LK G +V + T+
Sbjct: 200 LRVFDQMTGNGFKPDAVVLVSVLKTCAHLGALERGRWVH-RFLKAERLGGRPGNVMLETA 258
Query: 57 LLHEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP----LRN 111
L+ Y A +FD + + V WN MI G + +G+ A + F RM + N
Sbjct: 259 LVDMYCKCGCMNEAWWVFDGVQSHDVVLWNAMIGGLAMNGHGKRALELFRRMLDKGFVPN 318
Query: 112 VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKS 171
+++ + A ++ G D G +FR M + G+ P + G + LG GLL +
Sbjct: 319 ESTFVVALCACIHTGRVDEGEDVFRSM-RDHGIEPRREHYGCL---ADLLGRAGLL--EE 372
Query: 172 AHGFIVKNEWELNEQIATILVD---MYAKCGFLKYALMVFELMEERNVISWTALICGSAH 228
A G ++ E + L+ M+ G + +E + + AL A
Sbjct: 373 AEGVLLDMPMEPHASQWGALMSSCLMHNNVGVGERVGKKLIELEPDDGGRYVALFNLYAV 432
Query: 229 RGYSEDALSLFEMMQATGVK 248
G EDA +L +MM+ G K
Sbjct: 433 NGLWEDAKALRKMMEERGAK 452
>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Vitis vinifera]
Length = 635
Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 123/329 (37%), Positives = 197/329 (59%), Gaps = 6/329 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A LF+ +PER+ +WNTMI G ++G++ AR F MP +NV SW+ MI + G
Sbjct: 258 ALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGES 317
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ LK+F M+S G P+Q T +VL CS+L GL G+ H I K ++ + +
Sbjct: 318 EEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLA--GLGEGQQVHQIISKTVYQDSTFVV 375
Query: 189 TILVDMYAKCGFLKYALMVFE--LMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
+ L++MY+KCG L A +F+ + +R+++SW +I AH GY ++A++ F+ M+ +G
Sbjct: 376 SALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSG 435
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
KP+++T+ G+L+AC H GLV+EG KYF + ++ + R HY C+VDL G+AG L+EA
Sbjct: 436 FKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEA 495
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366
+ I + +P+ +WG+ LA C H + ++ K+ L V+PEN G + L+ ++Y
Sbjct: 496 FGFIERLETKPSARVWGALLAGCNVHANVKIGKQAAKKLLE-VEPEN-AGTYLLLSNIYA 553
Query: 367 MNEKWEGAERVRKLMLNQNVRKARGSSVI 395
KW A RVR M ++ ++K G S I
Sbjct: 554 STGKWREAARVRLKMKDKGLKKQPGCSWI 582
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 141/294 (47%), Gaps = 22/294 (7%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL-RNVASWSAMIAAYLNAGA 127
AR+LFDE+ E + +TW T+I GY K G + EAR F+R+ +NV +W+AM+ Y+ +
Sbjct: 71 ARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNK 130
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
KLF EM + ++ + M G +G + S L K +V W
Sbjct: 131 ISDAEKLFNEMPNKNVVSWNTMIDGYAQNG--RIDSAMYLFEKMPERNVV--SW------ 180
Query: 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
++ M A+CG ++ A +F+ M ER+VISWTA+I G + G ++A LF+ M V
Sbjct: 181 -NTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLSKNGRIDEARLLFDRMPERNV 239
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
+++ ++T +DE F+ + E + + M+ + G L A
Sbjct: 240 ----VSWNAMITGYAQNLRLDEALDLFERMPER-----DLPSWNTMITGLIQNGDLRRAR 290
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
++ M + NVI W + + C + + + A ++ + L + + G F +
Sbjct: 291 KLFNEMP-KKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSV 343
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 139/320 (43%), Gaps = 59/320 (18%)
Query: 69 ARKLFDEL-PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
AR+LFD + ++N VTW M+ GY +S + +A F MP +NV SW+ MI Y G
Sbjct: 102 ARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGR 161
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGS----------------VGLLMGKS 171
D + LF +M ++ + T+ ++L+ C + ++ G S
Sbjct: 162 IDSAMYLFEKMPERNVVSWN--TVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLS 219
Query: 172 AHGFIVKNEW------ELNEQIATILVDMYAKCGFLKYALMVFELMEER----------- 214
+G I + E N ++ YA+ L AL +FE M ER
Sbjct: 220 KNGRIDEARLLFDRMPERNVVSWNAMITGYAQNLRLDEALDLFERMPERDLPSWNTMITG 279
Query: 215 --------------------NVISWTALICGSAHRGYSEDALSLFEMMQAT-GVKPNEMT 253
NVISWT +I G G SE+AL +F M +T G KPN+ T
Sbjct: 280 LIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGT 339
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT- 312
F VL AC + + EG++ ++I + + +++++ K G L A ++
Sbjct: 340 FVSVLGACSNLAGLGEGQQVHQIISKTV-YQDSTFVVSALINMYSKCGELGTARKMFDDG 398
Query: 313 MRLEPNVIIWGSFLAACKEH 332
M + +++ W +AA H
Sbjct: 399 MTSQRDLVSWNGIIAAYAHH 418
>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 960
Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 130/394 (32%), Positives = 216/394 (54%), Gaps = 6/394 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF+QM R SV D F + IL C+ + + LH + +K G S V +++ Y
Sbjct: 366 LFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYA 425
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
A +F +P RN ++W MI +S+SG++ +AR +F+ MP RN+ +W++M++
Sbjct: 426 KCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLST 485
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ G + GLKL+ M SN G+ PD +T + C+ L V L M H K
Sbjct: 486 YVQNGFSEEGLKLYVSMRSN-GVQPDWITFTTSIRACADLAIVKLGMQVVTHA--TKFGL 542
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
LN +A +V MY++CG +K A F+ ++++++ISW A++ A G + FE
Sbjct: 543 SLNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFED 602
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M T KPN +++ VL+ C H GLV EG+ YF + + + P +H+ CMVDL G+AG
Sbjct: 603 MLKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRVFGISPTNEHFSCMVDLLGRAG 662
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
LE+A ++I M +PN +W + L +C+ H +AE K+ + + ++G + L+
Sbjct: 663 LLEQAKDLIEGMPFKPNATVWSALLGSCRVHHDLRLAETAAKKLMELDVEGSEG--YVLL 720
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y+ + + + +RKLM + +R +RG S I
Sbjct: 721 SNMYSESGELDNVADMRKLMKVKGIRTSRGCSWI 754
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 151/319 (47%), Gaps = 14/319 (4%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLF 73
D FS ++K+C + + LH+ + KLGF + S++ YV A +F
Sbjct: 145 DPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVF 204
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
++ + WN+MI GYS+ +A F RMP R+ SW+ +I+ + G L
Sbjct: 205 FDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLA 264
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
+F EM N+G +P+ MT G+VLS C+ + L G H I++ E L+ L+D
Sbjct: 265 MFVEMC-NQGFSPNFMTYGSVLSACA--STSDLKWGAHLHARILRMEHSLDLVFGNGLID 321
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
MYAKCG L A VF+ + E + ISW +LI G H G EDAL LF M+ + V +E
Sbjct: 322 MYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFI 381
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG----CMVDLFGKAGFLEEAYEV 309
+L C G + Y ++ + ++ ++ K G ++A V
Sbjct: 382 LPTILGVCSGPDYASTGE-----LLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLV 436
Query: 310 IRTMRLEPNVIIWGSFLAA 328
R M L N I W + + A
Sbjct: 437 FRLMPLR-NTISWTAMITA 454
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 136/316 (43%), Gaps = 50/316 (15%)
Query: 50 HVYVATSLLHEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL 109
H+Y L H+ A ++F E RN TWNTMI+ S + +A F+ MP+
Sbjct: 51 HMYSNCGLTHD--------AFQVFQETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPV 102
Query: 110 R--NVASWSAMIAAYLNAGAYDPGLKLFREMI---SNEGLTPDQMTIGAVLSGCSHLGSV 164
R + SW+ MI+ Y G + + F MI ++ G D + +V+ C LG
Sbjct: 103 RVKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDS 162
Query: 165 GLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKY--------------------- 203
L + H + K + + I +V MY KCG +
Sbjct: 163 RLAI--QLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIY 220
Query: 204 ----------ALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
AL +F M ER+ +SW LI + G+ L++F M G PN MT
Sbjct: 221 GYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMT 280
Query: 254 FTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312
+ VL+AC T + G + +++ E+ L+ + ++D++ K G L+ A V ++
Sbjct: 281 YGSVLSACASTSDLKWGAHLHARILRMEHSLD--LVFGNGLIDMYAKCGCLDLAKRVFKS 338
Query: 313 MRLEPNVIIWGSFLAA 328
+R E + I W S +
Sbjct: 339 LR-EHDHISWNSLITG 353
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 96/229 (41%), Gaps = 43/229 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L+ M V D + +++C + + + +H K G +V VA S++
Sbjct: 496 LKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTM 555
Query: 61 YVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A+ FD + +++ ++WN M+ ++++G + D FE
Sbjct: 556 YSRCGLIKEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFE-------------- 601
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI--- 176
+M+ E P+ ++ +VLSGCSH+G L+ + H F
Sbjct: 602 -----------------DMLKTE-CKPNHISYVSVLSGCSHMG----LVAEGKHYFDSMT 639
Query: 177 -VKNEWELNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALI 223
V NE + +VD+ + G L+ A + E M + N W+AL+
Sbjct: 640 RVFGISPTNEHFSC-MVDLLGRAGLLEQAKDLIEGMPFKPNATVWSALL 687
>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 904
Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 134/390 (34%), Positives = 221/390 (56%), Gaps = 5/390 (1%)
Query: 7 MHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTS 65
M + D S+L + SC+ N+ H ++L+ GF S + +L+ Y+
Sbjct: 327 MMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHR 386
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
A ++FD + + VTWN+++ GY ++G V A + F MP +N+ SW+ +I+A +
Sbjct: 387 QDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQE 446
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
Y+ +++F M S E + D +T+ ++ S C HLG++ L K + +I KN +L+
Sbjct: 447 NMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDL--AKWIYYYIEKNRIQLDV 504
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
++ T LVDM+++CG + A+ +F + R+V +WTA I A G E A+ LF M
Sbjct: 505 RLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFNEMIEQ 564
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305
G+KP+ + F G LTAC H GLV +G++ F +++ + + P HYGCMVDL G+AG LEE
Sbjct: 565 GLKPDGVVFIGALTACCHGGLVQQGKEIFNSMEKLHGVSPEDVHYGCMVDLLGRAGLLEE 624
Query: 306 AYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365
A ++I+ M EPN +IW S LAAC+ +MA + ++++ PE G + L+ ++Y
Sbjct: 625 ALQLIKDMPTEPNDVIWNSLLAACRVQGNVEMAA-FAAEKIQVLAPERTGS-YVLLSNVY 682
Query: 366 TMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+W +VR M + +RK G+SVI
Sbjct: 683 ASAGRWNDMAKVRLSMKEKGLRKPPGTSVI 712
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 129/290 (44%), Gaps = 44/290 (15%)
Query: 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY----VVTSFGFARKLFDELPE 78
LK+C + L + H + K G V T L+ S FA+++F+
Sbjct: 38 LKNCKTIDELKM---FHLSLTKQGLDDDVSAITKLVARSCELGTRESLSFAKEVFENGES 94
Query: 79 RNAV-TWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
+N++I+GY+ SG EA F RM
Sbjct: 95 YGTCFMYNSLIRGYASSGLCKEAILLFIRM------------------------------ 124
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
N G++PD+ T LS C+ G G HG I+K ++ + + LV YA+
Sbjct: 125 --MNSGISPDKYTFPFGLSVCAKSRDKG--NGIQIHGLIIKMDYAKDLFVQNSLVHFYAE 180
Query: 198 CGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL-FEMMQATGVKPNEMTFTG 256
CG L A VF+ M ERNV+SWT++ICG A R +++DA+ L F M++ V PN +T
Sbjct: 181 CGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVC 240
Query: 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
V++AC ++ G K + I + +E +VD++ K ++ A
Sbjct: 241 VISACAKLEDLETGEKVYDFI-RDSGIEVNDLMISALVDMYMKCNAIDIA 289
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 74/336 (22%), Positives = 142/336 (42%), Gaps = 34/336 (10%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF +M + D ++ L C + +H I+K+ + ++V SL+H
Sbjct: 120 LFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLIIKMDYAKDLFVQNSLVH--- 176
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
Y++ G + AR F+ M RNV SW++MI Y
Sbjct: 177 ---------------------------FYAECGELDCARKVFDEMSERNVVSWTSMICGY 209
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+ LF M+ +E + P+ +T+ V+S C+ L L G+ + FI + E
Sbjct: 210 ARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLED--LETGEKVYDFIRDSGIE 267
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
+N+ + + LVDMY KC + A +F+ N+ A+ +G +++AL + +M
Sbjct: 268 VNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLM 327
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
+G++P+ ++ +++C + G+ + E ++D++ K
Sbjct: 328 MDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLRN-GFESWDNICNALIDMYMKCHR 386
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
+ A+ + M V+ W S +A E+ + D A
Sbjct: 387 QDTAFRIFDRMS-NKTVVTWNSIVAGYIENGEVDAA 421
>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 600
Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 130/396 (32%), Positives = 218/396 (55%), Gaps = 39/396 (9%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+ M R V + F+ +LK C +L + +H ++K GF V+V +L+H Y
Sbjct: 112 FYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLGKCVHGCVVKFGFEEDVHVLNTLIHMYC 171
Query: 63 V---TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
F FA K+FD+ P+ + VT WSAMI
Sbjct: 172 CLGEDGFEFAEKVFDDSPKMDTVT-------------------------------WSAMI 200
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A ++ G + LFREM G+ PD++T+ +VLS C+ LG+ L +GK ++ K
Sbjct: 201 AGFVRLGCSSRAVDLFREM-QVMGVCPDEITMVSVLSACADLGA--LELGKWVESYVEKK 257
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ ++ L+DM+AKCG + A+ +F M+ R ++SWT++I G A G DA+SLF
Sbjct: 258 NIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLF 317
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+ M G+ P+++ F GVL+AC H+GLVD+GR YF ++ + + P+++HYGCMVDL +
Sbjct: 318 DEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVEHYGCMVDLLCR 377
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
GF++EA+E ++ M EPN IIW + + AC + + E + K+ ++ +P ++ +
Sbjct: 378 GGFVKEAFEFVQKMPFEPNQIIWRTIITACHATGELKLGESISKELIKS-EPMHESN-YV 435
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y +WE +VR++M + ++K GS++I
Sbjct: 436 LLSNIYAKLRQWEKKTKVREMMDMRGMKKVPGSTMI 471
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 88/326 (26%), Positives = 150/326 (46%), Gaps = 48/326 (14%)
Query: 18 SILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE-------YVVTSFGF-- 68
+IL +L S H N L+ + +H+ ILK G ++ + T + TSF F
Sbjct: 19 TILTLLNS--HCNTLSKLTQIHAFILKTGLQNNPLILTKFTSTSSNLNSIHYATSFLFPP 76
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
+ P +A +NT+I+ YS++ + F R LR
Sbjct: 77 SHTTSTPTPSYDAFLFNTLIRAYSQTRDSKSNSFLFYRTMLR------------------ 118
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
G+TP++ T VL GC+ +GS L +GK HG +VK +E + +
Sbjct: 119 -------------YGVTPNKFTFPFVLKGCAGIGS--LRLGKCVHGCVVKFGFEEDVHVL 163
Query: 189 TILVDMYAKCG--FLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
L+ MY G ++A VF+ + + ++W+A+I G G S A+ LF MQ G
Sbjct: 164 NTLIHMYCCLGEDGFEFAEKVFDDSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMG 223
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
V P+E+T VL+AC G ++ G K+ + E+ ++ ++ ++D+F K G +++A
Sbjct: 224 VCPDEITMVSVLSACADLGALELG-KWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKA 282
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEH 332
++ R M ++ W S +A H
Sbjct: 283 IKLFRQMD-SRTIVSWTSVIAGLAMH 307
>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 675
Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 136/400 (34%), Positives = 231/400 (57%), Gaps = 12/400 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF+ M V + +++ +L +C+ + + LH HI + + + ++L
Sbjct: 238 IALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDITCSLNLLNAMLDM 297
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
YV AR++F+ + R+ +W +++ GY+K+G++ AR F+ MP RN+ SW+AMI
Sbjct: 298 YVKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLFDEMPERNIVSWNAMI 357
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A Y L+LF M+ GL P + T+ VLS LG L MG+ H V
Sbjct: 358 AGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGC--LEMGQEIHCNHVN- 414
Query: 180 EWELNEQIATIL----VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
++ Q++ IL +DMYAKCG + A +F M E+N++SW ++I A G+++ A
Sbjct: 415 --KIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMISAYASYGHAKKA 472
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
L+LF+ M +G+KP+ +TF GVL+AC + G V EG+ +F+ ++ + +EP+ +HY CMVD
Sbjct: 473 LTLFDQMIGSGLKPDHITFIGVLSACSYGGFVSEGQAHFESMENCFGVEPKREHYACMVD 532
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
L + G L+EAYE+I M +E + WG+ L AC++H +MA ++ + L + PE D
Sbjct: 533 LLSRVGLLKEAYELISRMPMEASEGGWGALLDACRKHGNVEMA-KLAGEKLLELDPE-DS 590
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G+++L+ ++ +KW+ VR++M + V+K G S+I
Sbjct: 591 GIYSLLANICADGKKWKDVRMVRRMMRERGVKKVPGHSLI 630
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 104/359 (28%), Positives = 165/359 (45%), Gaps = 68/359 (18%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
F QM R DS S + LK+C F V +HS I K GF S ++V L+ YV
Sbjct: 139 FFRQMIRNRAEFDSGSFVFALKACGQFAEKIVGMAVHSVIWKRGFDSDLFVQNGLIQNYV 198
Query: 63 VTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
T GFAR++FDE ++ VTW TMI GY+++ +W
Sbjct: 199 ETGCLGFARQMFDESSVKDVVTWTTMINGYARN-------------------NW------ 233
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
D + LF M+S++ + P+++T+ A+LS CS G MGK+ H I + +
Sbjct: 234 ------LDEAIALFNSMLSSD-VKPNEVTMIALLSACSQKGDSE--MGKTLHEHIRRKDI 284
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR------------ 229
+ + ++DMY KCG L A +F ME R+V SWT+L+ G A
Sbjct: 285 TCSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLFDE 344
Query: 230 --------------GYSED-----ALSLF-EMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
GYS++ AL LF M+ G+ P E T VL+A G ++
Sbjct: 345 MPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEM 404
Query: 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
G++ + ++ + ++D++ K G ++ A ++ +M E N++ W S ++A
Sbjct: 405 GQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMP-EKNLVSWNSMISA 462
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 82/328 (25%), Positives = 148/328 (45%), Gaps = 42/328 (12%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDEL 76
L IL+SC+ ++ + + +HI G ++ ++ A+ LL ++ G +A +FD+
Sbjct: 56 LLILQSCS---SMFQLKQIQAHITCTGLMNQIFPASRLLAFCALSDSGDIHYAHLIFDQT 112
Query: 77 PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFR 136
N WNTMIKGY K+ + FF +M +RN A +D G +F
Sbjct: 113 ELPNCFFWNTMIKGYCKANHPSMGFSFFRQM-IRNRAE-------------FDSGSFVF- 157
Query: 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA 196
L C ++G + H I K ++ + + L+ Y
Sbjct: 158 -----------------ALKACGQFAEK--IVGMAVHSVIWKRGFDSDLFVQNGLIQNYV 198
Query: 197 KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTG 256
+ G L +A +F+ ++V++WT +I G A + ++A++LF M ++ VKPNE+T
Sbjct: 199 ETGCLGFARQMFDESSVKDVVTWTTMINGYARNNWLDEAIALFNSMLSSDVKPNEVTMIA 258
Query: 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE 316
+L+AC G + G+ + I + D+ + M+D++ K G L A E+ M
Sbjct: 259 LLSACSQKGDSEMGKTLHEHIRRK-DITCSLNLLNAMLDMYVKCGCLTTAREIFNNMERR 317
Query: 317 PNVIIWGSFLAACKEHKQFDMAERVIKQ 344
+V W S L ++ A ++ +
Sbjct: 318 -DVFSWTSLLNGYAKNGDLGSARKLFDE 344
>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
Length = 1321
Score = 247 bits (631), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 142/440 (32%), Positives = 240/440 (54%), Gaps = 49/440 (11%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ FS+M ++ + + F + ILK+C H ++ ++H+ ILK F S Y+ ++L+
Sbjct: 889 LSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALI-- 946
Query: 61 YVVTSFGFARK---LFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR----NVA 113
Y+ + G K +FD + +++ V N M+ GY++ G V EA B ++M NV
Sbjct: 947 YMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVV 1006
Query: 114 SWSAMIAAY---------------LNAGAYDP--------------------GLKLFREM 138
SW+ +IA + + A +P G F+EM
Sbjct: 1007 SWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEM 1066
Query: 139 ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198
+ ++G P +TI ++L C+++ + L GK HG+ + E + + + LVDMYAKC
Sbjct: 1067 L-DQGFCPSSVTISSLLPACTNVAN--LRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKC 1123
Query: 199 GFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL 258
G++ A ++F +M ERN ++W +LI G A+ GY +A+ LF M+ + K + +TFT VL
Sbjct: 1124 GYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVL 1183
Query: 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPN 318
AC H G+V+ G F + E+Y +EPR++HY CMVDL G+AG L EAY++I+ M +EP+
Sbjct: 1184 NACSHAGMVELGESLFXKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPD 1243
Query: 319 VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVR 378
+WG+ L AC+ H ++AE V + L ++PE+ G L+ +LY +W A +++
Sbjct: 1244 KFVWGALLGACRNHGNIELAE-VAAEHLFELEPESPGSSL-LLSNLYADAGRWGNAAKMK 1301
Query: 379 KLMLNQNVRKARGSSVISSL 398
K+M + K G S I ++
Sbjct: 1302 KMMKQRKFGKFPGCSWIEAV 1321
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 116/397 (29%), Positives = 194/397 (48%), Gaps = 38/397 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++ FS M + + F+ +L SC + H+ ++K G S V+V T++
Sbjct: 300 LKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAI--- 356
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERM--PLRNVASWSAM 118
I YS G + EA F++M NV SW+A+
Sbjct: 357 ---------------------------IDMYSGLGEMDEAEKQFKQMGRAASNV-SWNAL 388
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
IA Y+ + ++ F M+ E + ++ T + CS S+ + H ++K
Sbjct: 389 IAGYVLNEKIEKAMEAFCRMV-KEDVACNEFTYSNIFKACSSFPSLATTV--QIHSRLIK 445
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ E N +A+ L++ Y +CG L+ A+ VF + + +V+SW ++I + G A+ L
Sbjct: 446 SNVESNLHVASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQNGDPWKAIFL 505
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
M G KP TF VL+AC H+GLV EG+++FK + ++Y ++P H CMVD+ G
Sbjct: 506 LRKMIEEGNKPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQDYSIQPEETHCSCMVDILG 565
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG LE A + I+ + ++P IW LAAC+ + MAE V ++ L + +P ND V+
Sbjct: 566 RAGQLENALDFIKKLTMKPTASIWRPLLAACRYNSNLQMAEYVAEKILDL-EP-NDATVY 623
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y +W AE R+LM + + K G S I
Sbjct: 624 VTLSNMYAEVGRWADAENQRRLMEQKEISKEPGCSWI 660
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 136/279 (48%), Gaps = 8/279 (2%)
Query: 91 YSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMT 150
Y++ G + AR F+++P N+ W + A G Y+ L F EM EGL P+Q
Sbjct: 848 YTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEM-QKEGLRPNQFV 906
Query: 151 IGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFEL 210
+ ++L C HL G++ H I+KN +E + I + L+ MY+KCG ++ A VF+
Sbjct: 907 LPSILKACGHLSD--RRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDW 964
Query: 211 MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
+ +++++ A++ G A G+ +AL L + MQ GVKPN +++ ++ G
Sbjct: 965 IVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMV 1024
Query: 271 RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE---PNVIIWGSFLA 327
+ F+++ +EP + + ++ F + E ++ + M + P+ + S L
Sbjct: 1025 SEVFRLMTAN-GVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLP 1083
Query: 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366
AC + + A+ ++ E D V + + D+Y
Sbjct: 1084 ACTNVANLRHGKEIHGYAM-VIGVEKDVYVRSALVDMYA 1121
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 141/274 (51%), Gaps = 7/274 (2%)
Query: 86 TMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLT 145
++I Y+K G V A +++M + A+ + +I+AY G + ++F + I N G
Sbjct: 153 SLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQ-IGNMGTR 211
Query: 146 PDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYAL 205
P+ T +L+ C + ++ GK H +VK ++ + L+ +Y+KCG ++ A
Sbjct: 212 PNHYTYSTMLAVCGTISAIQ--EGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAE 269
Query: 206 MVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG 265
+VFE + +RN+ISWTA I G G + AL F MM+ +G++PNE TF+ VL +C
Sbjct: 270 IVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVK 329
Query: 266 LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSF 325
+GR + + ++ + + ++D++ G ++EA + + M + + W +
Sbjct: 330 DFIDGRMFHTQVIKK-GMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNAL 388
Query: 326 LAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
+A +++ E+ ++ RMVK + FT
Sbjct: 389 IAGYVLNEKI---EKAMEAFCRMVKEDVACNEFT 419
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 124/272 (45%), Gaps = 21/272 (7%)
Query: 77 PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDP--GLKL 134
P + ++ ++ G+ N C FE+ P R S + ++ + DP G+K
Sbjct: 39 PYKGCMSKGNVVGGWVDLNNAC---ILFEKTPKRIGVS---ITESHRSGCTDDPEEGVKE 92
Query: 135 FREMISNE-------GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
NE G P + + + LS C G V L G+ H F+VK +E +
Sbjct: 93 AGFFTRNETPHVEFGGGFPHRQYVFSALSFCGREGCVEL--GRRWHCFVVKIGLGSDEFV 150
Query: 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
T L+DMYAKCG + A+ V++ M + + LI A G+ A +F + G
Sbjct: 151 CTSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGT 210
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
+PN T++ +L C + EG++ + ++ +Y E + + ++ L+ K G +EEA
Sbjct: 211 RPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGN--ALLTLYSKCGMMEEA 268
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
V ++R + N+I W + + +H F A
Sbjct: 269 EIVFESLR-QRNIISWTASINGFYQHGDFKKA 299
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 84/212 (39%), Gaps = 33/212 (15%)
Query: 165 GLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALIC 224
L G++ H +V A L+ Y +CG L A +F+ + N+ W L
Sbjct: 818 ALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTG 877
Query: 225 GSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI------D 278
A RG+ E+ALS F MQ G++PN+ +L AC H G +I
Sbjct: 878 ACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFES 937
Query: 279 EEYDLEPRIQHYG------------------------CMVDLFGKAGFLEEAYEVIRTMR 314
+ Y + I Y MV + + GF+ EA ++++ M+
Sbjct: 938 DAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQ 997
Query: 315 ---LEPNVIIWGSFLAACKEHKQFDMAERVIK 343
++PNV+ W + +A + M V +
Sbjct: 998 QAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFR 1029
>gi|15223858|ref|NP_177842.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122215262|sp|Q3ECB8.1|PP128_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g77170
gi|332197823|gb|AEE35944.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 467
Score = 247 bits (631), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 136/397 (34%), Positives = 216/397 (54%), Gaps = 33/397 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+Q++ M R +V D +S+ ++K+ ++ T+ LHS ++LGF+
Sbjct: 102 IQVYLGMVRSTVLPDRYSLPIVIKAAVQIHDFTLGKELHSVAVRLGFVG----------- 150
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
DE E +T Y K+G AR F+ P R + SW+A+I
Sbjct: 151 -------------DEFCESGFITL------YCKAGEFENARKVFDENPERKLGSWNAIIG 191
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
+AG + +++F +M GL PD T+ +V + C LG + L K E
Sbjct: 192 GLNHAGRANEAVEMFVDM-KRSGLEPDDFTMVSVTASCGGLGDLSLAFQLHKCVLQAKTE 250
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ + + L+DMY KCG + A +FE M +RNV+SW+++I G A G + +AL F
Sbjct: 251 EKSDIMMLNSLIDMYGKCGRMDLASHIFEEMRQRNVVSWSSMIVGYAANGNTLEALECFR 310
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ GV+PN++TF GVL+ACVH GLV+EG+ YF M+ E++LEP + HYGC+VDL +
Sbjct: 311 QMREFGVRPNKITFVGVLSACVHGGLVEEGKTYFAMMKSEFELEPGLSHYGCIVDLLSRD 370
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G L+EA +V+ M ++PNV++WG + C++ +MAE V + + +P ND GV+ +
Sbjct: 371 GQLKEAKKVVEEMPMKPNVMVWGCLMGGCEKFGDVEMAEWVAPYMVEL-EPWND-GVYVV 428
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
+ ++Y + W+ ERVRKLM + V K S S+
Sbjct: 429 LANVYALRGMWKDVERVRKLMKTKKVAKIPAYSYAST 465
>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
Length = 694
Score = 247 bits (631), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 125/317 (39%), Positives = 190/317 (59%), Gaps = 5/317 (1%)
Query: 79 RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM 138
RN ++ Y+K G + +AR F+ M R+V +WSAMI+ Y A L LF EM
Sbjct: 254 RNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEM 313
Query: 139 ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198
+ P+ +T+ +VLS C+ LG+ L GK H ++ + L + T LVD YAKC
Sbjct: 314 QLAR-VEPNDVTMVSVLSACAVLGA--LETGKWVHSYVRRKRLSLTTILGTALVDFYAKC 370
Query: 199 GFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL 258
G + A+ FE M +N +WTALI G A G +AL LF M+ G++P ++TF GVL
Sbjct: 371 GCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVL 430
Query: 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPN 318
AC H+ LV+EGR++F + +Y ++PR++HYGCMVDL G+AG ++EAY+ IRTM +EPN
Sbjct: 431 MACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPN 490
Query: 319 VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVR 378
+IW + L++C H+ + E +KQ + + P + G + L+ ++Y +W+ A VR
Sbjct: 491 AVIWRALLSSCAVHRNVGIGEEALKQIISL-NPSHSGD-YVLLSNIYASAGQWKDAAMVR 548
Query: 379 KLMLNQNVRKARGSSVI 395
K M ++ + K G S+I
Sbjct: 549 KEMKDRGIEKTPGCSLI 565
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 91/328 (27%), Positives = 157/328 (47%), Gaps = 37/328 (11%)
Query: 1 MQLFSQM-HRQSV-PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL 58
+ LF +M H S P+D + LKSC+ L V + ++ +K G ++ +V +SL+
Sbjct: 103 LHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLI 162
Query: 59 HEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
H Y + G+V AR F+ V W+A+
Sbjct: 163 HMY------------------------------ASCGDVAAARLVFDAAEESGVVMWNAI 192
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
+AAYL G + +++F+ M+ G+ D++T+ +V++ C +G L GK G + +
Sbjct: 193 VAAYLKNGDWMEVVEMFKGML-EVGVAFDEVTLVSVVTACGRIGDAKL--GKWVAGHVDE 249
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
N ++ T L+DMYAKCG + A +F+ M+ R+V++W+A+I G +AL L
Sbjct: 250 EGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGL 309
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F MQ V+PN++T VL+AC G ++ G K+ L +VD +
Sbjct: 310 FSEMQLARVEPNDVTMVSVLSACAVLGALETG-KWVHSYVRRKRLSLTTILGTALVDFYA 368
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
K G +++A E +M ++ N W + +
Sbjct: 369 KCGCIDDAVEAFESMPVK-NSWTWTALI 395
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 109/230 (47%), Gaps = 6/230 (2%)
Query: 106 RMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP-DQMTIGAVLSGCSHLGSV 164
R PL + ++ ++ A+L+AG + L LF EM+ P DQ T L CS +
Sbjct: 78 RPPL-STPCYNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRM--C 134
Query: 165 GLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALIC 224
L +G+ + VK + + + L+ MYA CG + A +VF+ EE V+ W A++
Sbjct: 135 ALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVA 194
Query: 225 GSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLE 284
G + + +F+ M GV +E+T V+TAC G G+ +DEE L
Sbjct: 195 AYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEE-GLA 253
Query: 285 PRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
+ ++D++ K G + +A + M+ +V+ W + ++ + Q
Sbjct: 254 RNPKLVTALMDMYAKCGEIGKARRLFDGMQSR-DVVAWSAMISGYTQADQ 302
>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 247 bits (631), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 138/398 (34%), Positives = 224/398 (56%), Gaps = 35/398 (8%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
++S+M +SV + F+ ++++C + +H+H+LK GF + + +L+H YV
Sbjct: 81 MYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYV 140
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
S AR++FD +P+R+ RN SW+AMIAA
Sbjct: 141 NFQSLEQARRVFDNMPQRD-----------------------------RNSVSWNAMIAA 171
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ + LF M E + D+ ++LS C+ LG+ L GK HG+I K+
Sbjct: 172 YVQSNRLHEAFALFDRM-RLENVVLDKFVAASMLSACTGLGA--LEQGKWIHGYIEKSGI 228
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
EL+ ++AT ++DMY KCG L+ A VF + ++ + SW +I G A G E A+ LF+
Sbjct: 229 ELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKE 288
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M+ V P+ +TF VL+AC H+GLV+EG+ YF+ + E L+P ++H+GCMVDL G+AG
Sbjct: 289 MEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAG 348
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
LEEA ++I M + P+ + G+ + AC+ H ++ E++ K+ + + +P N G + L+
Sbjct: 349 LLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIEL-EPHNS-GRYVLL 406
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLS 399
+LY +WE +VRKLM ++ V+KA G S+I S S
Sbjct: 407 ANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESES 444
>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
Length = 742
Score = 247 bits (631), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 137/395 (34%), Positives = 223/395 (56%), Gaps = 7/395 (1%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV- 62
F+ M V D +++ L +C+ NL + LH + + + +L+ Y
Sbjct: 225 FNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAK 284
Query: 63 VTSFGFARKLFDELPE-RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
A+ +FD + + WN +I GY K G+V AR F++M R+V ++++MI
Sbjct: 285 CGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITG 344
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+++G L+LF +M G+ D T+ ++L+ C+ LG+ L G++ H I +
Sbjct: 345 YIHSGRLRDALQLFMQM-RRHGMRADNFTVVSLLTACASLGA--LPHGRALHASIEQRIV 401
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
E + + T L+DMY KCG + A VF M ER+V +WTA+I G A G +DAL F
Sbjct: 402 EEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQ 461
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M+ G +P +T+ VLTAC H+ L+DEGR +F + + L P+++HYGCM+DL ++G
Sbjct: 462 MKRDGFQPTSVTYIAVLTACSHSSLLDEGRLHFNEMRSLHKLHPQVEHYGCMIDLLARSG 521
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L+EA +++TM ++PN +IWGS L+AC+ HK D+A + L++ PE D V+ +
Sbjct: 522 LLDEAMHLVQTMPMQPNAVIWGSILSACRVHKNIDLARHAAEHLLKLA-PEED-AVYVQL 579
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
++Y + +W A+RVR LM + V+K G S I+
Sbjct: 580 YNIYIDSRQWADAKRVRMLMEERGVKKTAGYSSIT 614
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 146/310 (47%), Gaps = 42/310 (13%)
Query: 53 VATSLLHEYVVTSFGF---ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL 109
VA L+H Y S G AR+ FDE+P ++AV W T+I G + G + EAR + P
Sbjct: 142 VANPLIHMY--ASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLLDEARRLLVQAPE 199
Query: 110 RNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMG 169
RNV SW+++IA Y AG + F M+S +G+ PD++ + LS CS L ++ L
Sbjct: 200 RNVVSWTSLIAGYSRAGRPADAVYCFNCMLS-DGVAPDEVAVIGALSACSKLKNLDLGRL 258
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFEL------------------- 210
+ + + + + L+DMYAKCG + A VF+
Sbjct: 259 LHL--LVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCK 316
Query: 211 -------------MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGV 257
M R+VI++ ++I G H G DAL LF M+ G++ + T +
Sbjct: 317 LGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSL 376
Query: 258 LTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEP 317
LTAC G + GR I E+ +E + ++D++ K G ++EA V M E
Sbjct: 377 LTACASLGALPHGRALHASI-EQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMG-ER 434
Query: 318 NVIIWGSFLA 327
+V W + +A
Sbjct: 435 DVHTWTAMIA 444
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 98/227 (43%), Gaps = 39/227 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+QLF QM R + +D+F+++ +L +C L LH+ I + VY+ T+LL
Sbjct: 355 LQLFMQMRRHGMRADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDM 414
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y+ A +F + ER+ TW MI G + +G +A + F +M
Sbjct: 415 YMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQM------------ 462
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+G P +T AVL+ CSH LL H +++
Sbjct: 463 --------------------KRDGFQPTSVTYIAVLTACSH---SSLLDEGRLHFNEMRS 499
Query: 180 EWELNEQIA--TILVDMYAKCGFLKYALMVFELME-ERNVISWTALI 223
+L+ Q+ ++D+ A+ G L A+ + + M + N + W +++
Sbjct: 500 LHKLHPQVEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWGSIL 546
>gi|255584555|ref|XP_002533004.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527215|gb|EEF29379.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 519
Score = 247 bits (631), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 133/399 (33%), Positives = 223/399 (55%), Gaps = 12/399 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
M LFS+M ++ + F+ ++ S T N+ + LH+ +K+G + V+V +++L
Sbjct: 84 MCLFSRMLLLNIKPNEFTFATVIHSSTGLKNIYLGKQLHARTMKMGLNTIVFVGSAMLDF 143
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + SF AR F+++ + N V++ T+I GY K G + +A F+ MP RNV SW+AM+
Sbjct: 144 YAKLCSFEEARNAFEDIQKPNVVSYTTLIHGYLKKGKIDDALQLFQEMPERNVVSWNAMV 203
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ G + + LF EM+ EG P+Q T ++ +++ S+G MGKS H VK+
Sbjct: 204 GGFSQMGHNEEAVSLFIEML-REGFMPNQSTFPCAITSAANMASLG--MGKSFHACAVKS 260
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + LV YAKCG ++ +L+VF + +RN +SW A+ICG A G EDA+ F
Sbjct: 261 LCTSDVFVCNSLVSFYAKCGSMEDSLLVFNELPDRNTVSWNAVICGFAQNGRGEDAVIFF 320
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRI---QHYGCMVDL 296
E M+A G++PN +T G+L AC H GLV++G YF + +E EP I +HY CMVDL
Sbjct: 321 ERMRAAGLRPNSVTLLGLLCACNHAGLVEKGYMYFNQMRQE---EPGILKPEHYACMVDL 377
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
+ G L+EA + + + +P W + L C H ++++ + Q + + PE D
Sbjct: 378 LSRFGRLKEAAKFLHDLPFDPGTGFWKALLGGCHIHSNAELSD-LAAQKILALDPE-DVS 435
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++ + Y+ +W+ +R+ M + +++ G S I
Sbjct: 436 SYVMLSNAYSAAGRWQQVSTIRREMKEKGLKRIPGCSWI 474
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 116/259 (44%), Gaps = 11/259 (4%)
Query: 71 KLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDP 130
+LFDE+PE + ++ T+I +++ EA F RM L N+ A +++
Sbjct: 54 ELFDEMPELDVLSVTTLIGRFARQHRYEEAMCLFSRMLLLNIKPNEFTFATVIHSST--- 110
Query: 131 GLKLFREMISNEGLTPDQMTIG---AVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
GLK + + L M +G V G + L L ++ + N
Sbjct: 111 GLK---NIYLGKQLHARTMKMGLNTIVFVGSAMLDFYAKLCSFEEARNAFEDIQKPNVVS 167
Query: 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
T L+ Y K G + AL +F+ M ERNV+SW A++ G + G++E+A+SLF M G
Sbjct: 168 YTTLIHGYLKKGKIDDALQLFQEMPERNVVSWNAMVGGFSQMGHNEEAVSLFIEMLREGF 227
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
PN+ TF +T+ + + G K F + + +V + K G +E++
Sbjct: 228 MPNQSTFPCAITSAANMASLGMG-KSFHACAVKSLCTSDVFVCNSLVSFYAKCGSMEDSL 286
Query: 308 EVIRTMRLEPNVIIWGSFL 326
V + + N + W + +
Sbjct: 287 LVFNELP-DRNTVSWNAVI 304
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 20/147 (13%)
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
+F+ M E +V+S T LI A + E+A+ LF M +KPNE TF V+ + TGL
Sbjct: 55 LFDEMPELDVLSVTTLIGRFARQHRYEEAMCLFSRMLLLNIKPNEFTFATVIHS--STGL 112
Query: 267 VDEGRKYFKMIDEEYDLEPRIQHYG---------CMVDLFGKAGFLEEAYEVIRTMRLEP 317
K I L R G M+D + K EEA ++ +P
Sbjct: 113 --------KNIYLGKQLHARTMKMGLNTIVFVGSAMLDFYAKLCSFEEARNAFEDIQ-KP 163
Query: 318 NVIIWGSFLAACKEHKQFDMAERVIKQ 344
NV+ + + + + + D A ++ ++
Sbjct: 164 NVVSYTTLIHGYLKKGKIDDALQLFQE 190
>gi|225434871|ref|XP_002280683.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Vitis vinifera]
Length = 545
Score = 247 bits (631), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 142/440 (32%), Positives = 241/440 (54%), Gaps = 49/440 (11%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ FS+M ++ + + F + ILK+C H ++ ++H+ ILK F S Y+ ++L+
Sbjct: 113 LSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALI-- 170
Query: 61 YVVTSFGFARK---LFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR----NVA 113
Y+ + G K +FD + +++ V N M+ GY++ G V EA + ++M NV
Sbjct: 171 YMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALNLVQKMQQAGVKPNVV 230
Query: 114 SWSAMIAAY---------------LNAGAYDP--------------------GLKLFREM 138
SW+ +IA + + A +P G F+EM
Sbjct: 231 SWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEM 290
Query: 139 ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198
+ ++G P +TI ++L C+++ + L GK HG+ + E + + + LVDMYAKC
Sbjct: 291 L-DQGFCPSSVTISSLLPACTNVAN--LRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKC 347
Query: 199 GFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL 258
G++ A ++F +M ERN ++W +LI G A+ GY +A+ LF M+ + K + +TFT VL
Sbjct: 348 GYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVL 407
Query: 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPN 318
AC H G+V+ G F+ + E+Y +EPR++HY CMVDL G+AG L EAY++I+ M +EP+
Sbjct: 408 NACSHAGMVELGESLFRKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPD 467
Query: 319 VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVR 378
+WG+ L AC+ H ++AE V + L ++PE+ G L+ +LY +W A +++
Sbjct: 468 KFVWGALLGACRNHGNIELAE-VAAEHLFELEPESPGSSL-LLSNLYADAGRWGNAAKMK 525
Query: 379 KLMLNQNVRKARGSSVISSL 398
K+M + K G S I ++
Sbjct: 526 KMMKQRKFGKFPGCSWIEAV 545
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 137/279 (49%), Gaps = 8/279 (2%)
Query: 91 YSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMT 150
Y++ G + AR F+++P N+ W + A G Y+ L F EM EGL P+Q
Sbjct: 72 YTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEM-QKEGLRPNQFV 130
Query: 151 IGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFEL 210
+ ++L C HL G++ H I+KN +E + I + L+ MY+KCG ++ A VF+
Sbjct: 131 LPSILKACGHLSD--RRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDW 188
Query: 211 MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
+ +++++ A++ G A G+ +AL+L + MQ GVKPN +++ ++ G
Sbjct: 189 IVDKDLVVMNAMVSGYAQHGFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMV 248
Query: 271 RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE---PNVIIWGSFLA 327
+ F+++ +EP + + ++ F + E ++ + M + P+ + S L
Sbjct: 249 SEVFRLMTAN-GVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLP 307
Query: 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366
AC + + A+ ++ E D V + + D+Y
Sbjct: 308 ACTNVANLRHGKEIHGYAM-VIGVEKDVYVRSALVDMYA 345
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 83/212 (39%), Gaps = 33/212 (15%)
Query: 165 GLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALIC 224
L G++ H +V A L+ Y +CG L A +F+ + N+ W L
Sbjct: 42 ALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTG 101
Query: 225 GSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI------D 278
A RG+ E+ALS F MQ G++PN+ +L AC H G +I
Sbjct: 102 ACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFES 161
Query: 279 EEYDLEPRIQHY------------------------GCMVDLFGKAGFLEEAYEVIRTMR 314
+ Y + I Y MV + + GF+ EA +++ M+
Sbjct: 162 DAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALNLVQKMQ 221
Query: 315 ---LEPNVIIWGSFLAACKEHKQFDMAERVIK 343
++PNV+ W + +A + M V +
Sbjct: 222 QAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFR 253
>gi|222622042|gb|EEE56174.1| hypothetical protein OsJ_05117 [Oryza sativa Japonica Group]
Length = 545
Score = 247 bits (631), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 137/397 (34%), Positives = 221/397 (55%), Gaps = 8/397 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +FS D F+ + L + + + +H I + G S + V +L+
Sbjct: 104 ISVFSHAIASGHRPDGFAAVGALSASGGLGDQRIGSVVHGLIFRCGLDSELVVCNALVDM 163
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y F AR +FD + ++ VTW +M+ GY K V A FF +MP+++ SW+A+I
Sbjct: 164 YCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALI 223
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
++ L+LF +M+ EG P+ +TI VLS C+ +G++ L G++ HG+ K+
Sbjct: 224 TGHVQDKQPIQALELFGKMLL-EGHRPNHITIVGVLSACADIGALDL--GRAIHGYGSKS 280
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
N + L+DMYAK G + A VFE ++ ++ +WT +I +G A+ LF
Sbjct: 281 NATTNIIVTNALMDMYAKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELF 340
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M +G+ PN +TF VL+AC H GL+ EGR+ F + E Y ++PR++HYGCMVDL G+
Sbjct: 341 WDMLRSGILPNSVTFVSVLSACSHAGLIQEGRELFDKMREVYHIDPRLEHYGCMVDLLGR 400
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE-NDGGVF 358
G LEEA +I M +EP+++IW S L+AC H +AE + ++K E D GV+
Sbjct: 401 GGLLEEAEALIDHMDVEPDIVIWRSLLSACLAHGNDRLAE---IAGMEIIKREPGDDGVY 457
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y ++ +W+ A +RK ML++ + K G S I
Sbjct: 458 VLLWNMYALSNRWKEALDMRKQMLSRKIYKKPGCSWI 494
>gi|357116134|ref|XP_003559839.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Brachypodium distachyon]
Length = 601
Score = 247 bits (630), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 134/396 (33%), Positives = 227/396 (57%), Gaps = 8/396 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISH--VYVATSLL 58
+QLF M + + D ++ + +L C N + +H +++ I + ++ +LL
Sbjct: 203 LQLFRDMASREIGVDQYAAVALLSCCGRLKNALLGRSVHGVVVRRMDIKDRGLILSNALL 262
Query: 59 HEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
Y A ++F E E++ ++WNTMI G++ G + A FF P R++ SW+
Sbjct: 263 DMYAKCGEMNTAMRVFGEAKEKDDISWNTMIAGFANDGMLDLASKFFFDAPCRDLISWNT 322
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
++A Y + ++LF +M+S+ + PD++T ++S G++ L GKS HG+++
Sbjct: 323 LLAGYGRCREFAAVMELFNDMLSSR-VRPDKVTAVTLISAAVSKGALNL--GKSVHGWVL 379
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
K + +A+ LVDMY KCG +K A VFE +++V WTA+I G A G+ +AL
Sbjct: 380 KEHGTQDAFLASTLVDMYCKCGNVKLAYAVFEKALDKDVTLWTAMISGLAFHGHGTEALD 439
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LF MQ GV PN +T VL+AC H GL+DEG + F + + +++EPR++H+GCMVDL
Sbjct: 440 LFWNMQNEGVAPNGVTLVTVLSACSHAGLLDEGCEIFYTMQKRFNIEPRVEHFGCMVDLL 499
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
++G L +A + R M ++P+ IWGS L+ + ++AE K+ LR+ +P +GG
Sbjct: 500 ARSGRLSDAVGLARMMPMKPSRSIWGSILSVSSSCQNTEVAEIASKELLRL-EPTEEGG- 557
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
+ L+ +LY +W + +VR+ M + VRK+ G+S
Sbjct: 558 YVLLSNLYAAGGQWNYSNKVRENMEMRGVRKSAGAS 593
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 91/366 (24%), Positives = 164/366 (44%), Gaps = 73/366 (19%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+ M S D + L +LKS +V +H+H+L G S VY+
Sbjct: 105 VALYKSMLASSASPDEKTFLSLLKS---VGCASVGKQVHAHVLVNGLHSRVYLR------ 155
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
N++IK Y +G+ A F+ +P+ +V S + M++
Sbjct: 156 ------------------------NSLIKMYLDAGDAETAEAMFQSVPVPDVVSCNIMLS 191
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y+ G L+LFR+M S E + DQ A+LS C L + L+G+S HG +V+
Sbjct: 192 GYVKGGCVVNALQLFRDMASRE-IGVDQYAAVALLSCCGRLKNA--LLGRSVHGVVVR-R 247
Query: 181 WELNEQ---IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA-- 235
++ ++ ++ L+DMYAKCG + A+ VF +E++ ISW +I G A+ G + A
Sbjct: 248 MDIKDRGLILSNALLDMYAKCGEMNTAMRVFGEAKEKDDISWNTMIAGFANDGMLDLASK 307
Query: 236 -----------------------------LSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
+ LF M ++ V+P+++T +++A V G
Sbjct: 308 FFFDAPCRDLISWNTLLAGYGRCREFAAVMELFNDMLSSRVRPDKVTAVTLISAAVSKGA 367
Query: 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
++ G+ + +E+ + +VD++ K G ++ AY V L+ +V +W + +
Sbjct: 368 LNLGKSVHGWVLKEHGTQDAFLA-STLVDMYCKCGNVKLAYAVFEKA-LDKDVTLWTAMI 425
Query: 327 AACKEH 332
+ H
Sbjct: 426 SGLAFH 431
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 91/212 (42%), Gaps = 12/212 (5%)
Query: 132 LKLFREMISNEGLTPDQMTIGAVLS--GCSHLGSVGLLMGKSAHGFIVKNEWELNEQIAT 189
+ L++ M+++ +PD+ T ++L GC+ +G K H ++ N +
Sbjct: 105 VALYKSMLASSA-SPDEKTFLSLLKSVGCASVG-------KQVHAHVLVNGLHSRVYLRN 156
Query: 190 ILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP 249
L+ MY G + A +F+ + +V+S ++ G G +AL LF M + +
Sbjct: 157 SLIKMYLDAGDAETAEAMFQSVPVPDVVSCNIMLSGYVKGGCVVNALQLFRDMASREIGV 216
Query: 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR-IQHYGCMVDLFGKAGFLEEAYE 308
++ +L+ C GR ++ D++ R + ++D++ K G + A
Sbjct: 217 DQYAAVALLSCCGRLKNALLGRSVHGVVVRRMDIKDRGLILSNALLDMYAKCGEMNTAMR 276
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAER 340
V + E + I W + +A D+A +
Sbjct: 277 VFGEAK-EKDDISWNTMIAGFANDGMLDLASK 307
>gi|147816693|emb|CAN62262.1| hypothetical protein VITISV_013985 [Vitis vinifera]
Length = 531
Score = 247 bits (630), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 126/384 (32%), Positives = 212/384 (55%), Gaps = 7/384 (1%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS-FGFARKLF 73
D+++ +LK C+H + +H ++K G ++ TSL+H Y + A +
Sbjct: 122 DNYTYTFVLKVCSHLKAIFEGKQVHCQVIKAGVAPDTHIHTSLIHMYAKSDCLACAEGVL 181
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
E + N + N+MI GY G+V +AR F++M ++ A+WS MI Y G ++ L
Sbjct: 182 AECSQENVLAINSMISGYMSQGHVEKARAMFDKMGAKDAATWSGMITGYTKNGMHEEALV 241
Query: 134 LFREM--ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
+FREM +SN G+ P++ + + LS + LG+ L G+ H +I + +++ + T L
Sbjct: 242 MFREMMMVSNSGVQPNESALVSSLSATACLGA--LDQGRWIHAYIRRIGAKISITLGTGL 299
Query: 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE 251
VDMYAKCG + + +F M++R+V++W ++ G A G + LF+ M A G +PNE
Sbjct: 300 VDMYAKCGSIHCSYKLFREMQQRDVVTWGVMMSGFAMHGQARKCFQLFDEMVAGGTRPNE 359
Query: 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR 311
+ F +L+AC H G ++ G YF + ++ + P ++HYGCMVDL G+AG L EA E+I
Sbjct: 360 VIFVAILSACSHAGYLELGHHYFNQMVTDFGIRPSVEHYGCMVDLLGRAGQLAEAEELII 419
Query: 312 TMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKW 371
+M EP +IWG+ L+AC+ HK R +Q +++ D + L +++ +
Sbjct: 420 SMPEEPTAVIWGALLSACRIHKDLRRGRRAFRQLMQLEPLRGD--RYKLAGQMFSSAGEK 477
Query: 372 EGAERVRKLMLNQNVRKARGSSVI 395
E A+ V + + + RGSS I
Sbjct: 478 EEADNVTRFIKENELETTRGSSFI 501
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 93/211 (44%), Gaps = 9/211 (4%)
Query: 191 LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250
L+D Y + YAL+VF + +V ++ A+I G D+L L+ + G+ P+
Sbjct: 63 LLDSYVSMSQIYYALLVFNRIPSPDVFAYNAMIRGLTLGNCPYDSLLLYNKLLLGGLTPD 122
Query: 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI 310
T+T VL C H + EG++ + + + P + ++ ++ K+ L A V+
Sbjct: 123 NYTYTFVLKVCSHLKAIFEGKQVHCQVIKA-GVAPDTHIHTSLIHMYAKSDCLACAEGVL 181
Query: 311 RTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEK 370
E NV+ S ++ + A + + D ++ + YT N
Sbjct: 182 AECSQE-NVLAINSMISGYMSQGHVEKARAMFDKM-----GAKDAATWSGMITGYTKNGM 235
Query: 371 WEGAERV-RKLMLNQNVR-KARGSSVISSLS 399
E A + R++M+ N + S+++SSLS
Sbjct: 236 HEEALVMFREMMMVSNSGVQPNESALVSSLS 266
>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
Length = 604
Score = 247 bits (630), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 136/382 (35%), Positives = 218/382 (57%), Gaps = 24/382 (6%)
Query: 17 FSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLF 73
FSI +LK+C +H +LK +V S++ Y+ FG AR++F
Sbjct: 110 FSIPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYI--DFGEIELARRVF 167
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
D +P R+ V+WN+MI GY K+G + A + F+ MP R++ S +AMI Y
Sbjct: 168 DRMPNRDVVSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGY----------- 216
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ-IATILV 192
+EM+S GL PD I +VLS + LG V GK H ++ N+ EL+ I + L+
Sbjct: 217 -GKEMLS-LGLRPDGPAIVSVLSAIADLGFVE--EGKWLHAYVSMNKIELSSGFIGSALI 272
Query: 193 DMYAKCGFLKYALMVFE-LMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE 251
DMY+KCG+++ A VF + RN+ W ++I G A G + +AL +F M+ ++PNE
Sbjct: 273 DMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNE 332
Query: 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR 311
+TF G+L+ C H GLV+EG+ YF+ + E+Y + PRIQHYGCM+DLFG+AG LE+A VI+
Sbjct: 333 ITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQ 392
Query: 312 TMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKW 371
M E +++ W + L+A +H ++ + +A+ + +D + L+ ++Y +W
Sbjct: 393 NMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELAP--DDSSSYVLLSNIYAKAGRW 450
Query: 372 EGAERVRKLMLNQNVRKARGSS 393
+ ++R +M + V+K G S
Sbjct: 451 DDVAKIRLMMRQRGVKKIAGCS 472
>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
Length = 1217
Score = 247 bits (630), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 135/433 (31%), Positives = 224/433 (51%), Gaps = 43/433 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+Q+F M V D ++ +LK+C+ N+ + +H K+G S ++V L+
Sbjct: 126 IQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSM 185
Query: 61 YVVTSF-GFARKLFDELPERNAVTWNTMIKGYSK-------------------------- 93
Y F AR + DE+ R+ V+WN+++ GY++
Sbjct: 186 YGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTM 245
Query: 94 -----------SGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNE 142
+ NV +D F +M +++ SW+ MI Y+ ++L+ M ++
Sbjct: 246 ASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEAD- 304
Query: 143 GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLK 202
G PD ++I +VL C ++ L GK HG+I + + N + L+DMYAKCG L
Sbjct: 305 GFEPDAVSITSVLPACGDTSALSL--GKKIHGYIERKKLIPNLLLENALIDMYAKCGCLD 362
Query: 203 YALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACV 262
A VFE M+ R+V+SWTA+I G DA++LF MQ +G+ P+ + F L AC
Sbjct: 363 RARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACS 422
Query: 263 HTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
H GL++EGR FK++ + Y + PR++H CMVDL G+AG ++EAY+ I+ M +EPN +W
Sbjct: 423 HAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVW 482
Query: 323 GSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382
G+ L AC+ H D+ + L + PE G + L+ ++Y +WE +R +M
Sbjct: 483 GALLGACRVHSNTDIG-LLAADKLFQLAPEQ-SGYYVLLSNIYAKAGRWEEVTNIRNIMK 540
Query: 383 NQNVRKARGSSVI 395
++ ++K G+S +
Sbjct: 541 SKGLKKNPGASNV 553
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 124/261 (47%), Gaps = 15/261 (5%)
Query: 87 MIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
+++ Y+ +V AR F+ +P RNV + MI +Y+N G Y G+++F M S + P
Sbjct: 81 LMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCH-VKP 139
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
D T VL CS G++ ++GK HG K + LV MY KCGFL A +
Sbjct: 140 DHYTFPCVLKACSCSGNI--VIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARL 197
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT-- 264
V + M R+V+SW +L+ G A +DAL + M++ + + T +L A +T
Sbjct: 198 VLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTT 257
Query: 265 -GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR---LEPNVI 320
++ +FKM + + + M+ ++ K EA E+ M EP+ +
Sbjct: 258 ENVMYVKDMFFKMGKKS------LVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAV 311
Query: 321 IWGSFLAACKEHKQFDMAERV 341
S L AC + + +++
Sbjct: 312 SITSVLPACGDTSALSLGKKI 332
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 90/189 (47%), Gaps = 3/189 (1%)
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR 229
++ H I+ + N + L+ YA + A VF+ + ERNVI +I +
Sbjct: 60 RTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNN 119
Query: 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQH 289
G+ + + +F M + VKP+ TF VL AC +G + G+K + L +
Sbjct: 120 GFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSA-TKVGLSSTLFV 178
Query: 290 YGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349
+V ++GK GFL EA V+ M +V+ W S +A ++++FD A V ++ + V
Sbjct: 179 GNGLVSMYGKCGFLSEARLVLDEMSRR-DVVSWNSLVAGYAQNQRFDDALEVCRE-MESV 236
Query: 350 KPENDGGVF 358
K +D G
Sbjct: 237 KISHDAGTM 245
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 123/304 (40%), Gaps = 71/304 (23%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L+S M D+ SI +L +C + L++ +H G+I + +LL E
Sbjct: 295 VELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIH------GYIERKKLIPNLLLE 348
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
N +I Y+K G + ARD FE M R+V SW+AMI+
Sbjct: 349 ------------------------NALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMIS 384
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
AY +G + LF +M + GL PD + L+ CSH G L G+S + +
Sbjct: 385 AYGFSGRGCDAVALFSKM-QDSGLVPDSIAFVTTLAACSHAGL--LEEGRSCFKLMT-DH 440
Query: 181 WELNEQIATI--LVDMYAKCGFLKYAL-MVFELMEERNVISWTALICGS----------- 226
+++ ++ + +VD+ + G +K A + E+ E N W AL+
Sbjct: 441 YKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLL 500
Query: 227 -----------------------AHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263
A G E+ ++ +M++ G+K N + +H
Sbjct: 501 AADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIH 560
Query: 264 TGLV 267
T LV
Sbjct: 561 TFLV 564
>gi|218189594|gb|EEC72021.1| hypothetical protein OsI_04901 [Oryza sativa Indica Group]
Length = 589
Score = 247 bits (630), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 122/327 (37%), Positives = 200/327 (61%), Gaps = 5/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR+LFD++P+R+ V WN+MI GY++ G + EAR FE MP RNV SWS +I Y+ G
Sbjct: 232 ARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEP 291
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ L+ F+ M+S G+ PD++ ++ C+ LG+ L G+ H ++ K + + +
Sbjct: 292 NEALEFFQRMLSC-GIKPDRVAAVGAVAACAQLGA--LEQGRWLHSYLEKKKVLFDVVVQ 348
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
T L+DMY KCG L A ++FE M +++V++W +I G GY DA+ LF M+
Sbjct: 349 TALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAP 408
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
++++ VLT+C H GLV EG F ++++ LEP+++HYG ++DL G+AG +++A
Sbjct: 409 MDDLSVLAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARN 468
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
I TM +EP +WGS LA+C+ H+ ++AE +++ + +D GV+ L+ ++Y
Sbjct: 469 TIETMPMEPTPELWGSLLASCRSHRCVELAELSVERLASL--GADDSGVYVLLSNIYADE 526
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
W+ R+RKLM + ++K G SVI
Sbjct: 527 GMWDDVFRIRKLMSAEGMKKNIGRSVI 553
>gi|345505208|gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]
Length = 615
Score = 247 bits (630), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 118/327 (36%), Positives = 198/327 (60%), Gaps = 4/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A+ LFD++P R+ VTW TM+ GY+K G V +A+ F++MP R+V ++++M+A Y+ +
Sbjct: 273 AKDLFDKMPRRDVVTWATMVDGYAKLGFVHQAKSLFDQMPQRDVVAYNSMMAGYVQNRYH 332
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ +F +M L+PD+ T+ VLS + LG + M H + V+ ++ L ++
Sbjct: 333 MEAIDIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAM--DMHLYTVEKKFLLGGKLG 390
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+DMY+KCG ++ A+ VFE +E +++ W A+I G A G E A + ++ +K
Sbjct: 391 VALIDMYSKCGSIQQAMGVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIK 450
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+++TF GVL AC H+GLV EG F+++ ++ +EPR+QHYGCMVD+ ++G +E A
Sbjct: 451 PDDITFVGVLNACSHSGLVKEGLLCFELMKRKHKIEPRLQHYGCMVDILSRSGRIELAKN 510
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+I M +EPN +IW +FL AC HK+F+ E V K + ++ + + L+ ++Y
Sbjct: 511 LIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLI--LQAGYNPSSYVLLSNMYASL 568
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
W+ RVR +M + ++K G S I
Sbjct: 569 GMWKEVRRVRTMMKERKIQKIPGCSWI 595
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 87/356 (24%), Positives = 154/356 (43%), Gaps = 59/356 (16%)
Query: 1 MQLFSQMHRQSVPSDSFS-ILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
M +F+ H+ P S S + +L +C +++ IH GFI + + T
Sbjct: 1 MLVFAHSHQ---PWSSISPTIQLLGTCKTSEDVSKIHARKG---TTGFIKNTNLTTR--- 51
Query: 60 EYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
+V +F +R+ + L E ++ SGNV D F W+A+I
Sbjct: 52 --IVLAFAASRRSY--LAEFARCVFHEYHVSSXXSGNV---EDPF---------LWNAVI 95
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
++ + L LF M+ N G++ D+ ++ VL CS LG V G HGF+ K
Sbjct: 96 KSHSHGVEPRKALLLFFLMLKN-GVSVDKFSLSLVLKACSRLGFVK--EGMQXHGFLRKT 152
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + L+ +Y KCG L +A VF+ M +R+ +S+ ++I G G E A LF
Sbjct: 153 GIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMIDGYVKCGLIESARELF 212
Query: 240 EMMQATGVKPNEMTFTGVLTACVH-----------------------TGLVDEGRKYFKM 276
++M + K N +++ ++ L+D K+ ++
Sbjct: 213 DLMPSE--KKNLISWNSMINGYAQRADGVDIASNLFDEMPEKDLISWNSLIDGYVKHGRI 270
Query: 277 IDEE--YDLEPR--IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
D + +D PR + + MVD + K GF+ +A + M + +V+ + S +A
Sbjct: 271 EDAKDLFDKMPRRDVVTWATMVDGYAKLGFVHQAKSLFDQMP-QRDVVAYNSMMAG 325
>gi|253761503|ref|XP_002489130.1| hypothetical protein SORBIDRAFT_0019s004710 [Sorghum bicolor]
gi|241947229|gb|EES20374.1| hypothetical protein SORBIDRAFT_0019s004710 [Sorghum bicolor]
Length = 489
Score = 247 bits (630), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 123/318 (38%), Positives = 187/318 (58%), Gaps = 4/318 (1%)
Query: 80 NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI 139
+A N +++GYS +G + AR F+ +P RN A ++ M++AY G ++ + F EM+
Sbjct: 156 DAYVANGLVRGYSVAGRLQAARRVFDELPERNPAVYTTMVSAYAQNGRHEDAMAAFDEMV 215
Query: 140 SNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG 199
G P T+ +VLS C+ S GL MG H + ++ + T L+DMY K G
Sbjct: 216 -RVGFEPCGATLASVLSACARSASGGLEMGCHVHDLMTAWGVPVSTILGTALIDMYVKNG 274
Query: 200 FLKYALMVFELMEERNVI-SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL 258
+K A V + + ER+V +W ALI G AH G+ E AL+LF MQ GV PN T G L
Sbjct: 275 AIKEAFAVLDGLPERHVTGAWNALISGLAHHGHRERALNLFRQMQQEGVPPNATTLVGAL 334
Query: 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPN 318
+AC H GL+DE R+ F +++++ + P IQHYGCMVDL G+AG L EA ++IR M E +
Sbjct: 335 SACSHPGLLDEARRLFSSMEKDFGITPAIQHYGCMVDLLGRAGLLSEAEDLIRGMSCEAD 394
Query: 319 VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVR 378
+IWG+ L ACK H ++AER + L++ P N GV+ ++ +LY +W+ +++R
Sbjct: 395 TVIWGALLTACKNHSGIEIAERAAVEMLKL-DPSNH-GVYVVLSNLYAEAGRWQDVDKLR 452
Query: 379 KLMLNQNVRKARGSSVIS 396
K M + K G+S ++
Sbjct: 453 KEMKGARLSKIPGASTVN 470
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 107/258 (41%), Gaps = 14/258 (5%)
Query: 98 CEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSG 157
C F LR +AS AA+ F + L P + T +L
Sbjct: 81 CAPNSFMLNTTLRVLASSPDPAAAF----------PFFSRLRVTGALAPGRHTFPFLLKA 130
Query: 158 CSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVI 217
+ L + L + + H V++ L+ +A LV Y+ G L+ A VF+ + ERN
Sbjct: 131 AARL-PLPLPVTEQLHALAVRHGVLLDAYVANGLVRGYSVAGRLQAARRVFDELPERNPA 189
Query: 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH--TGLVDEGRKYFK 275
+T ++ A G EDA++ F+ M G +P T VL+AC +G ++ G
Sbjct: 190 VYTTMVSAYAQNGRHEDAMAAFDEMVRVGFEPCGATLASVLSACARSASGGLEMGCHVHD 249
Query: 276 MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQF 335
++ + + ++D++ K G ++EA+ V+ + W + ++ H
Sbjct: 250 LM-TAWGVPVSTILGTALIDMYVKNGAIKEAFAVLDGLPERHVTGAWNALISGLAHHGHR 308
Query: 336 DMAERVIKQALRMVKPEN 353
+ A + +Q + P N
Sbjct: 309 ERALNLFRQMQQEGVPPN 326
>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 558
Score = 247 bits (630), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 147/392 (37%), Positives = 213/392 (54%), Gaps = 39/392 (9%)
Query: 6 QMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS 65
+M V D F+ +LK+C L LHS + KLGF S VYV L+H Y
Sbjct: 77 KMAMAGVSPDHFTFPFVLKACA---RLQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCG 133
Query: 66 F-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLN 124
F FA K+F+E+PER+ V+W++MI ++K+G EA F+RM L
Sbjct: 134 FLDFALKVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGT------------ 181
Query: 125 AGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN 184
+ PD++ + +V+S S LG L +GK GFI +N E
Sbjct: 182 -------------------VKPDEVIVLSVVSAISILGD--LELGKWIRGFISRNGLEFT 220
Query: 185 EQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQA 244
+ T LVDM+++CG ++ ++ VF+ M ERNV++WTALI G A G S +AL +F M+
Sbjct: 221 VSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRN 280
Query: 245 TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLE 304
G +P+ +TFTGVL AC H GLV EG F+ I EY +EP +HYGCMVDL G+AG L
Sbjct: 281 HGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLN 340
Query: 305 EAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDL 364
EA + + M + PN IIW + L AC H ++AE+V K+ + + +DG + L+ ++
Sbjct: 341 EACKFVDGMPIRPNSIIWRTLLGACVNHNYIELAEKV-KEKINELDSYHDGD-YVLLSNV 398
Query: 365 YTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
Y +W VR M + + K G S+I+
Sbjct: 399 YGGVGRWAEKAGVRNSMREKRISKKPGCSLIN 430
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 138/314 (43%), Gaps = 44/314 (14%)
Query: 35 IHHLHSHILKLGFISHVYVATSLLHEYVVT---SFGFARKLFDELPERNAVTWNTMIKGY 91
I+ LH+ +LK G +H LL + S +AR +FD + + +NT+I+ +
Sbjct: 4 IYKLHARLLKTGHHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFNTIIRAH 63
Query: 92 SKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTI 151
A + ++ G++PD T
Sbjct: 64 ---------------------------------ADSSPSFSLSLFSKMAMAGVSPDHFTF 90
Query: 152 GAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELM 211
VL C+ L + G H + K ++ + + L+ Y CGFL +AL VFE M
Sbjct: 91 PFVLKACARLQT-----GLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKVFEEM 145
Query: 212 EERNVISWTALICGSAHRGYSEDALSLFEMMQATG-VKPNEMTFTGVLTACVHTGLVDEG 270
ER+++SW+++I A G+ +AL+LF+ MQ G VKP+E+ V++A G ++ G
Sbjct: 146 PERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELG 205
Query: 271 RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330
K+ + LE + +VD+F + G +EE+ V M E NV+ W + +
Sbjct: 206 -KWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMG-ERNVLTWTALINGLA 263
Query: 331 EHKQFDMAERVIKQ 344
H + A R+ +
Sbjct: 264 VHGRSAEALRMFYE 277
>gi|225445484|ref|XP_002282063.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 533
Score = 247 bits (630), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 142/391 (36%), Positives = 217/391 (55%), Gaps = 17/391 (4%)
Query: 14 SDSFSILHILKSCTHFNNLTVIHH--LHSHILKLGFISHVYVATSLLHEYVVT-SFGFAR 70
+++++ ++K+CT + + + +H+H++ GF +V ++L+ Y + G AR
Sbjct: 110 ANNYTFPPLIKACTTLGSSSKLIGCLVHAHVVTFGFDEDPFVVSALIEFYSLNFDMGTAR 169
Query: 71 KLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDP 130
LFD +P R+ V W MI GY K G+V AR FE MP RN SWSA++AAY G +
Sbjct: 170 TLFDRIPNRDVVLWTAMIDGYGKMGDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKE 229
Query: 131 GLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATI 190
L LFR M G P++ + +VL+ C+HLG+ L G H + + ++ N +AT
Sbjct: 230 VLCLFRRM-QEAGTMPNESVLVSVLTACAHLGA--LAQGLWVHSYAKQCNFDSNPILATA 286
Query: 191 LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250
LVDMY+KCG ++ AL F+ + ++ +W A+I G A G + +L LF M + G +P
Sbjct: 287 LVDMYSKCGCVESALSTFQGIPNKDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQPT 346
Query: 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI 310
E TF VLTAC H LV EG K F+ + Y +EP+++HY C+VDL +AG L EA + I
Sbjct: 347 ETTFVAVLTACTHARLVKEGLKLFEQMSSNYGVEPQLEHYACLVDLMARAGMLAEAEKFI 406
Query: 311 RTM-----RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365
R + NV WG+ L AC+ + ++ RV K+ M D G L +LY
Sbjct: 407 EEKMGGLGRGDANV--WGAMLGACRTYGNIEVGNRVWKKLADMGVA--DCGTHVLSYNLY 462
Query: 366 TMNEKWE-GAERVRKLMLNQNVRKARGSSVI 395
W+ A+RVR+L+ ++K G S+I
Sbjct: 463 R-EAGWDMEAKRVRRLISEAGMKKKPGCSII 492
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 132/338 (39%), Gaps = 86/338 (25%)
Query: 22 ILKSCTHFNNLTVIHH--LHSHILKLGFISHVYVATSLLHEYVVTS-----FGFARKLFD 74
+LK C + L IH L SH+ + F A L TS F A +F
Sbjct: 17 LLKKCRALSQLKQIHANLLQSHLPESPF------AIGQLLSLAATSNNPSFFSHACLIFQ 70
Query: 75 ELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKL 134
L RN +N+MI+GY P R + + M+
Sbjct: 71 NLSLRNIFMYNSMIRGY-----------VLSHSPTRAILCYLDML--------------- 104
Query: 135 FREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK--------------NE 180
N GL + T ++ C+ LGS L+G H +V
Sbjct: 105 ------NYGLLANNYTFPPLIKACTTLGSSSKLIGCLVHAHVVTFGFDEDPFVVSALIEF 158
Query: 181 WELNEQIA-----------------TILVDMYAKCGFLKYALMVFELMEERNVISWTALI 223
+ LN + T ++D Y K G +++A ++FE M ERN ISW+A++
Sbjct: 159 YSLNFDMGTARTLFDRIPNRDVVLWTAMIDGYGKMGDVEHARILFEDMPERNAISWSAVM 218
Query: 224 CGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG---RKYFKMIDEE 280
+ G ++ L LF MQ G PNE VLTAC H G + +G Y K +
Sbjct: 219 AAYSRVGDFKEVLCLFRRMQEAGTMPNESVLVSVLTACAHLGALAQGLWVHSYAKQCN-- 276
Query: 281 YDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPN 318
+D P + +VD++ K G +E A + T + PN
Sbjct: 277 FDSNPILAT--ALVDMYSKCGCVESA---LSTFQGIPN 309
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 5/149 (3%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF +M + ++ +L +C H L +HS+ + F S+ +AT+L+ Y
Sbjct: 233 LFRRMQEAGTMPNESVLVSVLTACAHLGALAQGLWVHSYAKQCNFDSNPILATALVDMYS 292
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNV----ASWSA 117
A F +P ++A WN MI G + +G+ ++ + F +M ++ A
Sbjct: 293 KCGCVESALSTFQGIPNKDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQPTETTFVA 352
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTP 146
++ A +A GLKLF +M SN G+ P
Sbjct: 353 VLTACTHARLVKEGLKLFEQMSSNYGVEP 381
>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 591
Score = 247 bits (630), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 135/396 (34%), Positives = 224/396 (56%), Gaps = 36/396 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILK-LGFISHVYVATSLLH 59
++ F +M + +D +++ +L +C++ +L + +HS+I + + V+V +LL
Sbjct: 197 VEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRHYIDMKADVFVGNALLD 256
Query: 60 EYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y+ K ++ A F+ MP++NV +W+AMI
Sbjct: 257 MYL------------------------------KCDDLNSAYKVFDEMPVKNVVTWNAMI 286
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ G Y L FR M+ ++G+ PD++T+ VL+ C++LG L +GK H ++ +N
Sbjct: 287 SGLAYQGRYREALDTFR-MMQDKGVKPDEVTLVGVLNSCANLGV--LEIGKWVHAYMRRN 343
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
++ + L+DMYAKCG + A VFE M+ R+V S+TA+I G A G + A +F
Sbjct: 344 HILADKFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVF 403
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M G++PNE+TF G+L AC H GLV EG+KYF + ++Y L P+ +HYGCM+DL G+
Sbjct: 404 SEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEHYGCMIDLLGR 463
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG ++EA E+I M + P+V G+ L AC+ H D+ E V+ Q L + P+ + G +
Sbjct: 464 AGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVM-QKLTELDPDEE-GTYI 521
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ +LY+ +W+ A ++RK M N+ +RK G S+I
Sbjct: 522 LMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLI 557
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/353 (27%), Positives = 173/353 (49%), Gaps = 36/353 (10%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
M+ ++M + D F+I +LK+ + +H+ +K G +
Sbjct: 95 MEFLNEMLVVGLEPDGFTIPLVLKALALIQGIREGQQIHARSIKTGMV------------ 142
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
GF N NT+++ YS G++ + + F+ P R++ SW+ +I
Sbjct: 143 ------GF-----------NVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQ 185
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN- 179
A+ AG Y ++ F EM + L D T+ VLS CS+LG + L G+ H +I
Sbjct: 186 AFTKAGLYSRAVEAFMEM-CDLRLRADGRTLVVVLSACSNLGDLNL--GQKVHSYIRHYI 242
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + + + L+DMY KC L A VF+ M +NV++W A+I G A++G +AL F
Sbjct: 243 DMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTF 302
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MMQ GVKP+E+T GVL +C + G+++ G+ + + L + ++D++ K
Sbjct: 303 RMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVG-NALLDMYAK 361
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-VKP 351
G ++EA+ V +M+ +V + + + H + + A +V + R+ ++P
Sbjct: 362 CGSIDEAFRVFESMK-RRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEP 413
>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 610
Score = 247 bits (630), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 130/384 (33%), Positives = 213/384 (55%), Gaps = 5/384 (1%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLF 73
D F I + + + LH+H + + V +SL+ Y S RK+F
Sbjct: 104 DHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVF 163
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
D + +N+V W ++ GY+ +G EA F MP RN+ +W+A+I+ +N G ++
Sbjct: 164 DSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVE 223
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
LF EM + D + V+ G + L + ++G+ HG ++ + N + L+D
Sbjct: 224 LFVEMRRDGVRIDDAFVLSIVIGGSADLAA--FVLGRQLHGSTMRLGFLSNMIVGNALID 281
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
MY+KC + A VFE + R+VISWT ++ G A G +E+AL+L++ M G KPNE+T
Sbjct: 282 MYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVT 341
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
F G++ AC H GLV +GR+ F+ + EY + PR+QHY C +DL ++G L EA E++ TM
Sbjct: 342 FVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTM 401
Query: 314 RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEG 373
EP+ WG+ L+AC ++K +M R+ + L + +P+ D + L+ ++Y +N KW+
Sbjct: 402 PYEPDEATWGALLSACTKYKDAEMCIRISDKLLEL-RPK-DSSTYILLSNVYAVNGKWDS 459
Query: 374 AERVRKLMLNQNVRKARGSSVISS 397
+VRK M+ +RK G S I +
Sbjct: 460 VAKVRKCMIGLEIRKEPGYSWIEA 483
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 94/180 (52%), Gaps = 6/180 (3%)
Query: 86 TMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLT 145
++ Y+KS + +A F+ P R++ +S+++ A ++ + + L + R M+S + L
Sbjct: 43 ALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALH 102
Query: 146 PDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYAL 205
PD I +V S + L S L G+ H V + + ++ + + LVDMY KCG
Sbjct: 103 PDHFVISSVASVFARLRSRRL--GRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGR 160
Query: 206 MVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG 265
VF+ M +N + WTAL+ G A G SE+AL LF M N +T +++ V+TG
Sbjct: 161 KVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGR----NLFAWTALISGLVNTG 216
>gi|225454898|ref|XP_002276015.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Vitis vinifera]
Length = 744
Score = 247 bits (630), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 145/430 (33%), Positives = 227/430 (52%), Gaps = 44/430 (10%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F +M + D I +L S ++ + H I++ + V +LL
Sbjct: 324 IDMFWEMLVSGIYPDGIVISCMLSSFSNSMRVFEAKAFHGLIIRRHYTLDQMVQNALLSM 383
Query: 61 YVVTSFGF---ARKLFDELPERNAVTWNTMIKGYS------------------------- 92
Y FGF A K F + E+N WN M+ GY
Sbjct: 384 YC--KFGFLKLAEKFFGRVNEQNFEAWNLMVSGYGATHLARSIHCYMIKNLMDENVSVNN 441
Query: 93 -------KSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLT 145
KSGN+ AR F R+P R++ +W+ +I++Y + G + L L+ +M+ E L
Sbjct: 442 SLIDMYGKSGNLTIARRIFCRIP-RDIVTWNTLISSYAHCGHFAEALSLYDKMVL-EDLK 499
Query: 146 PDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYAL 205
P+ T+ +VLS CSHL S L G+ H +I ++E N IAT L+DMYAKCG L+ +
Sbjct: 500 PNSATLVSVLSACSHLAS--LEEGEKVHNYINGGKFEFNLSIATALIDMYAKCGQLEKSR 557
Query: 206 MVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG 265
+F M ER+VI+W +I G G + A+ F+ M+ + KPN +TF VL+AC H G
Sbjct: 558 EIFNSMHERDVITWNVMISGYGMHGDARSAIEFFQQMEESSAKPNGLTFLAVLSACAHAG 617
Query: 266 LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSF 325
LV EG+ F + ++Y + P ++HY CMVDL G++G L+EA ++ +M + P+ +WG+
Sbjct: 618 LVKEGKYLFGKM-QDYSVAPNLKHYACMVDLLGRSGNLQEAEALVLSMPISPDGGVWGAL 676
Query: 326 LAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQN 385
L++CK H + +M R+ K A+ END G + +I ++Y+ KWE AE+ R +M +
Sbjct: 677 LSSCKIHNEIEMGIRIAKHAID-SDVEND-GYYVMISNMYSSIGKWEEAEKARGIMKERG 734
Query: 386 VRKARGSSVI 395
VRK G S +
Sbjct: 735 VRKKTGWSAV 744
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 91/352 (25%), Positives = 153/352 (43%), Gaps = 33/352 (9%)
Query: 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFDELPERNA 81
++C + L LH ++K G V + LL Y + A + F E+ ++
Sbjct: 245 FQACGNLGALLEGRCLHGLVVKTGMDYSQVVQSLLLSMYSKCGNPEEAHRSFCEVLNKDI 304
Query: 82 VTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGL---KLFREM 138
++W +MI YS+ G E D F M + + +I+ L++ + + K F +
Sbjct: 305 ISWTSMISAYSRMGWATECIDMFWEMLVSGIYPDGIVISCMLSSFSNSMRVFEAKAFHGL 364
Query: 139 ISNEGLTPDQMTIGAVLSGCSHLGSVGLL--------------------------MGKSA 172
I T DQM A+LS G + L + +S
Sbjct: 365 IIRRHYTLDQMVQNALLSMYCKFGFLKLAEKFFGRVNEQNFEAWNLMVSGYGATHLARSI 424
Query: 173 HGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
H +++KN + N + L+DMY K G L A +F + R++++W LI AH G+
Sbjct: 425 HCYMIKNLMDENVSVNNSLIDMYGKSGNLTIARRIFCRI-PRDIVTWNTLISSYAHCGHF 483
Query: 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC 292
+ALSL++ M +KPN T VL+AC H ++EG K I+ E +
Sbjct: 484 AEALSLYDKMVLEDLKPNSATLVSVLSACSHLASLEEGEKVHNYINGG-KFEFNLSIATA 542
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
++D++ K G LE++ E+ +M E +VI W ++ H A +Q
Sbjct: 543 LIDMYAKCGQLEKSREIFNSMH-ERDVITWNVMISGYGMHGDARSAIEFFQQ 593
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 154/324 (47%), Gaps = 49/324 (15%)
Query: 13 PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSF---GFA 69
P+D + H+L + ++L + H+ I+ G+ +++++A+ L+ Y SF +
Sbjct: 31 PNDFNYLNHLLSN--QISSLKTLLQSHAFIITSGYSNNIFIASKLISLY--ASFHKPSCS 86
Query: 70 RKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYD 129
+LFDE+P R+A W+++I A+ + G Y
Sbjct: 87 TELFDEIPHRDAFL-------------------------------WNSIIKAHFSNGEYS 115
Query: 130 PGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK-NEWELNEQIA 188
L ++ M ++E L P+ TI +++ C+ L V G+S HG + K + + +
Sbjct: 116 RALDFYQWMRASEAL-PNHFTIPMIVASCAELELVNY--GRSIHGLVSKLGLFSGSSAVG 172
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS-LFEM--MQAT 245
+ V MY+KCG L+ A VF+ + R+V++WTAL+ G G S+ L L EM +
Sbjct: 173 SSFVYMYSKCGVLEEAYGVFDEILFRDVVAWTALVIGCVQNGESKMGLECLCEMHRIGGD 232
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE-YDLEPRIQHYGCMVDLFGKAGFLE 304
G +PN T G AC + G + EGR ++ + D +Q ++ ++ K G E
Sbjct: 233 GERPNFRTLEGGFQACGNLGALLEGRCLHGLVVKTGMDYSQVVQ--SLLLSMYSKCGNPE 290
Query: 305 EAYEVIRTMRLEPNVIIWGSFLAA 328
EA+ + L ++I W S ++A
Sbjct: 291 EAHRSFCEV-LNKDIISWTSMISA 313
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 119/219 (54%), Gaps = 7/219 (3%)
Query: 91 YSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM--ISNEGLTPDQ 148
YSK G + EA F+ + R+V +W+A++ + G GL+ EM I +G P+
Sbjct: 179 YSKCGVLEEAYGVFDEILFRDVVAWTALVIGCVQNGESKMGLECLCEMHRIGGDGERPNF 238
Query: 149 MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVF 208
T+ C +LG+ LL G+ HG +VK + ++ + ++L+ MY+KCG + A F
Sbjct: 239 RTLEGGFQACGNLGA--LLEGRCLHGLVVKTGMDYSQVVQSLLLSMYSKCGNPEEAHRSF 296
Query: 209 ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
+ +++ISWT++I + G++ + + +F M +G+ P+ + + +L++ ++ V
Sbjct: 297 CEVLNKDIISWTSMISAYSRMGWATECIDMFWEMLVSGIYPDGIVISCMLSSFSNSMRVF 356
Query: 269 EGRKYFKM-IDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
E + + + I Y L+ +Q+ ++ ++ K GFL+ A
Sbjct: 357 EAKAFHGLIIRRHYTLDQMVQN--ALLSMYCKFGFLKLA 393
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 141/313 (45%), Gaps = 18/313 (5%)
Query: 78 ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
+ + V + ++ YSK GN EA F + +++ SW++MI+AY G + +F E
Sbjct: 270 DYSQVVQSLLLSMYSKCGNPEEAHRSFCEVLNKDIISWTSMISAYSRMGWATECIDMFWE 329
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
M+ + G+ PD + I +LS S+ S+ + K+ HG I++ + L++ + L+ MY K
Sbjct: 330 MLVS-GIYPDGIVISCMLSSFSN--SMRVFEAKAFHGLIIRRHYTLDQMVQNALLSMYCK 386
Query: 198 CGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGV 257
GFLK A F + E+N +W ++ G G + A S+ M + N +
Sbjct: 387 FGFLKLAEKFFGRVNEQNFEAWNLMVSG---YGATHLARSIHCYMIKNLMDENVSVNNSL 443
Query: 258 LTACVHTGLVDEGRKYFKMIDEEYDLEPR-IQHYGCMVDLFGKAGFLEEAYEVIRTMRLE 316
+ +G + R+ F I PR I + ++ + G EA + M LE
Sbjct: 444 IDMYGKSGNLTIARRIFCRI-------PRDIVTWNTLISSYAHCGHFAEALSLYDKMVLE 496
Query: 317 ---PNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEG 373
PN S L+AC + E+V + K E + + T + D+Y + E
Sbjct: 497 DLKPNSATLVSVLSACSHLASLEEGEKV-HNYINGGKFEFNLSIATALIDMYAKCGQLEK 555
Query: 374 AERVRKLMLNQNV 386
+ + M ++V
Sbjct: 556 SREIFNSMHERDV 568
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 1/177 (0%)
Query: 172 AHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGY 231
+H FI+ + + N IA+ L+ +YA + +F+ + R+ W ++I G
Sbjct: 54 SHAFIITSGYSNNIFIASKLISLYASFHKPSCSTELFDEIPHRDAFLWNSIIKAHFSNGE 113
Query: 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG 291
AL ++ M+A+ PN T ++ +C LV+ GR ++ +
Sbjct: 114 YSRALDFYQWMRASEALPNHFTIPMIVASCAELELVNYGRSIHGLVSKLGLFSGSSAVGS 173
Query: 292 CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348
V ++ K G LEEAY V + L +V+ W + + C ++ + M + + R+
Sbjct: 174 SFVYMYSKCGVLEEAYGVFDEI-LFRDVVAWTALVIGCVQNGESKMGLECLCEMHRI 229
>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 247 bits (630), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 125/395 (31%), Positives = 218/395 (55%), Gaps = 7/395 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ R + ++FS +L C L + +H +L GF+S++ +++S++ Y
Sbjct: 182 LYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYA 241
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
AR LFDE+ ++ W T++ GY+K G++ A + F +MP +N SWSA+I+
Sbjct: 242 KCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISG 301
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y L F +M+ G+ P+Q T + L C+ + + L GK HG++++ +
Sbjct: 302 YARNSLGHEALDYFTKMMKF-GINPEQYTFSSCLCACASIAA--LKHGKQVHGYLIRTYF 358
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELM-EERNVISWTALICGSAHRGYSEDALSLFE 240
N + + L+DMY+KCG L+ + VF LM +++V+ W +I A G+ E A+ +F
Sbjct: 359 RCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFN 418
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M +G+KP+ +TF +L+AC H+GLV EG ++FK + ++ + P +HY C++DL G+A
Sbjct: 419 DMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYSCLIDLLGRA 478
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G E + M +P+ +W + L C+ H ++ +V ++ + + KP++ +L
Sbjct: 479 GCFVELVNELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERVIEL-KPQSSAAYVSL 537
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
LY KWE E+VR+LM + +RK RG S I
Sbjct: 538 -ASLYAFLGKWESVEKVRELMDEKFIRKERGISWI 571
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 135/291 (46%), Gaps = 35/291 (12%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
ARK+FD++ RN +WN M+ GY+K G+V AR F+RM ++V SW+ ++ AY G +
Sbjct: 117 ARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCF 176
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ + L+R+ + + + VL C L L + K HG ++ + N ++
Sbjct: 177 NEAIGLYRD-FRRLDMGFNAFSFAGVLILCVKLKE--LQLAKQVHGQVLVAGFLSNLVLS 233
Query: 189 TILVDMYAKCGFLKYALMVFE-------------------------------LMEERNVI 217
+ +VD YAKCG ++ A +F+ M E+N +
Sbjct: 234 SSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPV 293
Query: 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI 277
SW+ALI G A +AL F M G+ P + TF+ L AC + G++ +
Sbjct: 294 SWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYL 353
Query: 278 DEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
Y ++D++ K G LE + V M + +V++W + ++A
Sbjct: 354 IRTY-FRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISA 403
>gi|242090555|ref|XP_002441110.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
gi|241946395|gb|EES19540.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
Length = 516
Score = 247 bits (630), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 128/362 (35%), Positives = 204/362 (56%), Gaps = 5/362 (1%)
Query: 37 HLHSHILKLGFISHVYVATSLLHEYVVTSFG-FARKLFDELPERNAVTWNTMIKGYSKSG 95
LH+H + + + V +SL+ Y ARK+FD + +N V W ++ GY+ +G
Sbjct: 32 QLHAHFVASPYSADDVVKSSLIDMYCKCGVPEDARKVFDSIGVKNGVVWTALVSGYASNG 91
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155
EA D F MP R + +W+A+I+ ++ AG + LF EM + D + V+
Sbjct: 92 CTGEAIDLFRSMPERGLFAWTALISGFVKAGNNTGAVGLFVEMRRDGVRIDDAFVLATVV 151
Query: 156 SGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERN 215
G + L + L++G+ HGF + + + + LVDMY+KC + A VF + R+
Sbjct: 152 GGAAELAA--LVLGRQLHGFAITLGFLSSMIVGNALVDMYSKCSDIHSAREVFGGIIVRD 209
Query: 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275
V+SWT ++ G A G E+ L+L++ M G+KPNE+TF G++ AC H GLV +GR+ F
Sbjct: 210 VVSWTTILVGEAQHGRVEEVLALYDRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFD 269
Query: 276 MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQF 335
+ EY ++P +QHY C +DL ++G+L EA E+I TM EP+ WG+ L+ACK+H
Sbjct: 270 SMKREYGIKPGLQHYTCYLDLLSRSGYLSEAEELITTMPYEPDEASWGALLSACKKHNDT 329
Query: 336 DMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
M RV L + +P+ D + L+ ++Y +N KW+ +VRK+M +RK G S I
Sbjct: 330 QMCLRVADNLLEL-RPK-DPSTYILLSNVYAVNCKWDSVAKVRKIMAEMEIRKEPGYSWI 387
Query: 396 SS 397
+
Sbjct: 388 EA 389
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 75/149 (50%), Gaps = 5/149 (3%)
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
M+S++ L PD + ++ S + L +G+ H V + + ++ + + L+DMY K
Sbjct: 1 MLSDDALRPDHFVLASLAS--AAARLRSLRLGRQLHAHFVASPYSADDVVKSSLIDMYCK 58
Query: 198 CGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGV 257
CG + A VF+ + +N + WTAL+ G A G + +A+ LF M G+ +G
Sbjct: 59 CGVPEDARKVFDSIGVKNGVVWTALVSGYASNGCTGEAIDLFRSMPERGLFAWTALISGF 118
Query: 258 LTACVHTGLVD---EGRKYFKMIDEEYDL 283
+ A +TG V E R+ ID+ + L
Sbjct: 119 VKAGNNTGAVGLFVEMRRDGVRIDDAFVL 147
>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
Length = 663
Score = 247 bits (630), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 139/400 (34%), Positives = 219/400 (54%), Gaps = 32/400 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +++Q+ + D+F +LK+C + + +H +LK G V+V +L+
Sbjct: 144 LNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLM 203
Query: 61 Y-VVTSFGFARKLFDELPERNAVTW----NTMIKGYSKSGNVCEARDFFERMPLRNVASW 115
Y +AR +FD++ ER+ V+W ++ Y+K G++ AR F + + V SW
Sbjct: 204 YGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSW 263
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
+AMIA + + + G KLF M E + P+++T+
Sbjct: 264 TAMIAGCIRSNRLEEGTKLFIRM-QEENIFPNEITM------------------------ 298
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
+ K E++ + T LVDMYAKCG + A +F R++ W A+I G A GY E+A
Sbjct: 299 LNKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEA 358
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
L +F M+ GVKPN++TF G+L AC H GLV EG+K F+ + + L P+I+HYGCMVD
Sbjct: 359 LDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVD 418
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
L G+AG L+EA+E+I++M ++PN I+WG+ +AAC+ HK + E Q L ++PEN
Sbjct: 419 LLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLE-IEPEN-C 476
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G L+ ++Y +W A VRK M ++K G SVI
Sbjct: 477 GYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVI 516
>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 661
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 125/328 (38%), Positives = 195/328 (59%), Gaps = 6/328 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR++FD + ++ +W TM+ Y+K G++ A F+ MP RN SWS MIAAY A
Sbjct: 297 AREVFDSMAVKDVYSWTTMVNAYAKCGDLESAARLFDDMPRRNAVSWSCMIAAYSQANQP 356
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH-GFIVKNEWELNEQI 187
+ ++LF+ MI EG+ P + +VLS C+ LG + L G+ + +++ + L +
Sbjct: 357 EEAVRLFKAMI-EEGVEPINAGLVSVLSACAQLGCLDL--GRWIYDNYVISGKAVLTVNL 413
Query: 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
+D+YAKCG A +F M ERNV+SW ++I A G SE+ L LFE ++ T +
Sbjct: 414 GNAFIDVYAKCGDFDAASKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCI 473
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
P+E+TF G+L+AC H+GLV EGR+YFK + Y +EP+ +HY CM+DL GK G LEEA+
Sbjct: 474 VPDEITFLGLLSACSHSGLVSEGRRYFKEMKLIYGIEPKSEHYACMIDLLGKIGLLEEAF 533
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM 367
EV + M +E + WG+ L AC+ + ++ E + +++ P D G++ L+ +Y
Sbjct: 534 EVAKGMPMETDEAGWGALLNACRMYGNVEIGEFAADKLVQL-NPL-DSGIYVLMSQIYAS 591
Query: 368 NEKWEGAERVRKLMLNQNVRKARGSSVI 395
KW+ + +R LM + V+K G S I
Sbjct: 592 KNKWDQVKILRVLMRERGVKKNPGCSSI 619
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 100/387 (25%), Positives = 170/387 (43%), Gaps = 88/387 (22%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHH-------LHSHILKLGFISH-VYVA 54
LF ++ R+S+P+D+ +++ +K+ + HH +H LK G ++ V V
Sbjct: 124 LFRRVIRESLPADARTLVFAIKAAASEHE----HHSPSGGEGVHCVALKWGHVAQSVLVG 179
Query: 55 TSLLHEYVV-TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA 113
+L+H Y S AR LFDE+P+R+ V+W T++ GY++ G EA
Sbjct: 180 NALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEA------------- 226
Query: 114 SWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL-MGKSA 172
W ++F M+ GL P+++T+ AV+S +G +GLL G+
Sbjct: 227 -W-----------------RVFCRMVVAGGLQPNEVTLVAVVSA---MGQMGLLAFGRMV 265
Query: 173 HGFIVKNEWELNEQIATILVDM-------------------------------YAKCGFL 201
+ ++ + + L+DM YAKCG L
Sbjct: 266 YRYVADGGVGRSVNLENALIDMFGKFGCAASAREVFDSMAVKDVYSWTTMVNAYAKCGDL 325
Query: 202 KYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261
+ A +F+ M RN +SW+ +I + E+A+ LF+ M GV+P VL+AC
Sbjct: 326 ESAARLFDDMPRRNAVSWSCMIAAYSQANQPEEAVRLFKAMIEEGVEPINAGLVSVLSAC 385
Query: 262 VHTGLVDEGRKYFKMIDEEYDLEPR----IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEP 317
G +D GR I + Y + + + +D++ K G + A ++ M E
Sbjct: 386 AQLGCLDLGR----WIYDNYVISGKAVLTVNLGNAFIDVYAKCGDFDAASKLFAEMA-ER 440
Query: 318 NVIIWGSFLAACKEHKQFDMAERVIKQ 344
NV+ W S + A H Q + R+ +Q
Sbjct: 441 NVVSWNSMIMAHAVHGQSEEVLRLFEQ 467
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 81/173 (46%), Gaps = 9/173 (5%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLH-SHILKLGFISHVYVATSLLH 59
++LF M + V + ++ +L +C L + ++ ++++ + V + + +
Sbjct: 360 VRLFKAMIEEGVEPINAGLVSVLSACAQLGCLDLGRWIYDNYVISGKAVLTVNLGNAFID 419
Query: 60 EYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP----LRNVAS 114
Y F A KLF E+ ERN V+WN+MI ++ G E FE++ + + +
Sbjct: 420 VYAKCGDFDAASKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIVPDEIT 479
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL 167
+ +++A ++G G + F+EM G+ P ++ LG +GLL
Sbjct: 480 FLGLLSACSHSGLVSEGRRYFKEMKLIYGIEPKSEHYACMI---DLLGKIGLL 529
>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 135/398 (33%), Positives = 216/398 (54%), Gaps = 41/398 (10%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHH---LHSHILKLGFISHVYVATSL 57
+ +++M +V +++ ++KSC +L + H +H H+L GF S VYV T+L
Sbjct: 96 LYFYTRMVLSNVAPSNYTFTSVIKSCA---DLVALRHGRIIHGHVLVNGFGSDVYVQTAL 152
Query: 58 LHEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
+ SF Y K G +C AR F++M R+V +W++
Sbjct: 153 M------SF------------------------YGKCGVLCNARKVFDKMRDRSVVTWNS 182
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MI+ Y G ++LF M G+ P+ T +VLS C+HLG+ ++G H + V
Sbjct: 183 MISGYEQNGFAKEAIRLFDRM-KEIGVEPNSATFVSVLSACAHLGA--FILGCWVHEYAV 239
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
N +LN + T L++MY +CG + A VF+ M+ERNV++WTA+I G GY A+
Sbjct: 240 GNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVE 299
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LF M+ G+ PN +TF VL+AC H GLV+EGR+ F+ + EEY L P ++H+ C+VD+
Sbjct: 300 LFHEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRVFESMREEYRLVPEVEHHVCLVDML 359
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
G+AG L+EAY I+ + EP IW + L ACK HK F + +V + R+ +
Sbjct: 360 GRAGLLDEAYNFIKEIHEEPAPAIWTAMLGACKMHKNFGLGAQVAEH--RLASEPGNPAH 417
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++ ++Y + + + E VR M+ + ++K G S I
Sbjct: 418 YVILSNIYALAGRMDQVEMVRDNMIRKCLKKQVGYSTI 455
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 82/178 (46%), Gaps = 8/178 (4%)
Query: 173 HGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALI-CGSAHRGY 231
H ++ + + + + T L+++ G + Y +F ++ + +T+LI S +
Sbjct: 32 HAHVIVSGYGCSRFLLTKLLNLACAAGSISYTRQIFLIVPNPDSFLFTSLIRSTSKFHNF 91
Query: 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR-KYFKMIDEEYDLEPRIQHY 290
S +L + M + V P+ TFT V+ +C + GR + ++ + + +Q
Sbjct: 92 SVYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQ-- 149
Query: 291 GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348
++ +GK G L A +V MR + +V+ W S ++ ++Q A+ I+ RM
Sbjct: 150 TALMSFYGKCGVLCNARKVFDKMR-DRSVVTWNSMISG---YEQNGFAKEAIRLFDRM 203
>gi|297810935|ref|XP_002873351.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319188|gb|EFH49610.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1281
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 133/400 (33%), Positives = 232/400 (58%), Gaps = 12/400 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++++ Q+ R D + +LKS + +N + LH ++K G ++++ +L+H
Sbjct: 839 IRVYIQILRSGFSPDHMTYPFLLKSSSRLSNREIGGSLHCSVVKTGLEWDLFISNTLIHM 898
Query: 61 YVVTSF---GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
Y SF ARKLFDE+P +N VTWN+++ Y+KSG+V AR F+ M +R+V +WS+
Sbjct: 899 Y--GSFRDKASARKLFDEMPYKNLVTWNSILDSYAKSGDVVSARLVFDEMTMRDVVTWSS 956
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MI Y+ +G Y+ L++F +M+ +++T+ +VL C+HLG + GK H +I+
Sbjct: 957 MIDGYVKSGEYNEALEIFDQMMRMGSSKANEVTMVSVLCACAHLGELN--RGKVVHRYIL 1014
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVF--ELMEERNVISWTALICGSAHRGYSEDA 235
L + T L+DMYAKCG + A VF +++ + + W A+I G A G+ ++
Sbjct: 1015 DVHLPLTVILQTSLIDMYAKCGSIGDAWGVFCGASVKKTDALMWNAMIGGLASHGFIRES 1074
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
L LF M+ + + P+E+TF +L AC H GLV E +F + +E EP+ +HY CMVD
Sbjct: 1075 LLLFHKMRESEIDPDEITFLCLLAACSHGGLVKEAWHFFTSL-KESGAEPKSEHYACMVD 1133
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
+ +AG +++A++ I M ++P + G+ C H ++AE V K+ + + +P NDG
Sbjct: 1134 VLSRAGLVKDAHDFISEMLIKPTGSVLGALFNGCINHGNLELAETVGKKLIEL-QPHNDG 1192
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ + ++Y +N+++ A +R+ M + V+K G S+I
Sbjct: 1193 R-YVGLANVYAINKQFGAARSMREAMEKKGVKKIAGHSII 1231
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 96/213 (45%), Gaps = 24/213 (11%)
Query: 87 MIKGYSKSGNVCEARDFFERMP----LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNE 142
++K ++G +A + + + LR++ S++A I + D GL+LFR+ +N
Sbjct: 550 LVKKLCENGKAVDACKYIDDVAGEGFLRHMVSYTAAIEGLIRNEGVDRGLELFRDTCAN- 608
Query: 143 GLTPD----QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATI--LVDMYA 196
G PD + I A+ C + L + G L +AT ++D +
Sbjct: 609 GHCPDVIAYHVLIKALCKACRTTEADNLFNEMVSKG--------LKPSVATYNSMIDGWC 660
Query: 197 KCGFLKYALMVFELM--EERN--VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEM 252
K G + L M +E+N VI++T+LI G +A+S + M+ PN +
Sbjct: 661 KEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGLCASRRPSEAISRWNEMKGKDCYPNRI 720
Query: 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP 285
TF ++ + G E YF+ + EE ++EP
Sbjct: 721 TFMALIQGLCNCGWSSEALVYFREM-EEKEMEP 752
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 24/195 (12%)
Query: 88 IKGYSKSGNVCEARDFFER-----MPLRNVASWSAMIAAYLNAGAYDPGLKLFR-EMISN 141
I+ +G V EA F+R + + N +++ ++ A + + L R + + +
Sbjct: 148 IRCLGNAGLVEEASSVFDRVREMGLCVPNAYTYNCLLEAISKSNSSSVELVEARLKEMRD 207
Query: 142 EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE-----WELNEQIATILVDMYA 196
G D+ T+ VL V GKS V NE W L+E I+TILV +
Sbjct: 208 CGFHFDKFTLTPVLQ-------VYCNNGKSERALSVFNEILSRGW-LDEHISTILVVSFC 259
Query: 197 KCGFLKYALMVFELMEER----NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEM 252
K G + A + E++EER N ++ LI G + A LFE M+ G+ P+
Sbjct: 260 KWGQVDKAFELIEMLEERHIRLNYKTFCVLIHGFVKESRIDKAFQLFEKMRRMGMNPDIA 319
Query: 253 TFTGVLTA-CVHTGL 266
+ ++ C H L
Sbjct: 320 LYDVLIGGLCKHKDL 334
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 70/145 (48%), Gaps = 5/145 (3%)
Query: 228 HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRI 287
+ G SE ALS+F + + G ++ V++ C G VD+ + +M++E + +
Sbjct: 226 NNGKSERALSVFNEILSRGWLDEHISTILVVSFC-KWGQVDKAFELIEMLEERH-IRLNY 283
Query: 288 QHYGCMVDLFGKAGFLEEAY---EVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
+ + ++ F K +++A+ E +R M + P++ ++ + +HK +MA + +
Sbjct: 284 KTFCVLIHGFVKESRIDKAFQLFEKMRRMGMNPDIALYDVLIGGLCKHKDLEMALSLYLE 343
Query: 345 ALRMVKPENDGGVFTLICDLYTMNE 369
R P + G + L+C +E
Sbjct: 344 IKRSGIPPDRGILGKLLCSFSEESE 368
>gi|345505220|gb|AEN99834.1| chlororespiratory reduction 4 [Draba nemorosa]
Length = 612
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 119/327 (36%), Positives = 196/327 (59%), Gaps = 4/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A+ LF+++P+R+ VTW TM+ GY+K G V +A+ F+RMPLR+V ++++MI Y+ +
Sbjct: 271 AKSLFNKMPKRDVVTWATMVDGYAKLGFVHQAKSLFDRMPLRDVVAYNSMITGYVQNRYH 330
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ +F +M L+PD+ T+ VLS + LG L H +I+ N++ L ++
Sbjct: 331 KEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGR--LSKAVDIHLYIMDNKFRLGGKLG 388
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+D Y+KCG ++ ++ VFE +E +++ W A+I G A G E A + ++ +K
Sbjct: 389 VALIDTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIEKRSIK 448
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+++TF GVL AC H+GLV EG F+++ ++ +EP++QHYGCMVD+ ++G +E A
Sbjct: 449 PDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPKLQHYGCMVDILSRSGSIELAKN 508
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+I M +EPN +IW +FL AC HK+F+ E V K ++ + F L+ ++Y
Sbjct: 509 LIEEMPIEPNDVIWRTFLTACSNHKEFETGELVAKHLF--LQGGYNPSSFVLLSNMYASF 566
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
W+ RVR M + +RK G S I
Sbjct: 567 GMWKEVRRVRTTMKERKLRKIPGCSWI 593
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 87/392 (22%), Positives = 166/392 (42%), Gaps = 89/392 (22%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF M V D FS+ +LK+C+ + +H + K G S +Y+ L+ Y+
Sbjct: 108 LFCLMLETGVSVDKFSLSLVLKACSRLGFVKEGMQIHGFLRKTGIWSDLYLQNCLIGLYI 167
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEAR-------------------- 101
G+AR++FD +P R++V++N+MI GY K G + AR
Sbjct: 168 KCGCLGYARQVFDRMPRRDSVSYNSMIDGYVKCGMIESARGLFDLMPKEKKNLISWNFMI 227
Query: 102 --------------DFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD 147
F+ MP +++ SW+++I Y+ G + LF +M + +T
Sbjct: 228 SGYAQRADGVNVAKKLFDEMPEKDLISWNSLIDGYVKHGRMEDAKSLFNKMPKRDVVT-- 285
Query: 148 QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMV 207
W +VD YAK GF+ A +
Sbjct: 286 ---------------------------------W-------ATMVDGYAKLGFVHQAKSL 305
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLF-EMMQATGVKPNEMTFTGVLTACVHTGL 266
F+ M R+V+++ ++I G Y ++A+ +F +M + + + P+E T VL+A G
Sbjct: 306 FDRMPLRDVVAYNSMITGYVQNRYHKEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGR 365
Query: 267 VDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSF 325
+ + + ++D ++ L ++ ++D + K G ++++ V + ++ W +
Sbjct: 366 LSKAVDIHLYIMDNKFRLGGKLG--VALIDTYSKCGSIQKSMRVFEEIE-NKSIDHWNAM 422
Query: 326 LAACKEH----KQFDMAERVIKQALRMVKPEN 353
+ H FDM ++ K R +KP++
Sbjct: 423 IGGLAIHGLGESAFDMLLQIEK---RSIKPDD 451
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/332 (24%), Positives = 148/332 (44%), Gaps = 48/332 (14%)
Query: 1 MQLFSQMHRQSVPSDSFS-ILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
M +F+ H+ P S S + +L SC N ++ +H+ ++ GFI + + T ++
Sbjct: 1 MLVFAHSHQ---PWSSISPTIKLLGSC---KNSEDVNKIHARLITNGFIKNPNLTTRIVL 54
Query: 60 EYVVTSFG----FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASW 115
++ + FAR +F E +VC DF + W
Sbjct: 55 DFADSRRSYLAEFARFVFHEY-------------------HVCSNGDF------EDPFLW 89
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
+A+I ++ + L LF M+ G++ D+ ++ VL CS LG V G HGF
Sbjct: 90 NAVIKSHSHGLDPRKALLLFCLMLET-GVSVDKFSLSLVLKACSRLGFVK--EGMQIHGF 146
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
+ K + + L+ +Y KCG L YA VF+ M R+ +S+ ++I G G E A
Sbjct: 147 LRKTGIWSDLYLQNCLIGLYIKCGCLGYARQVFDRMPRRDSVSYNSMIDGYVKCGMIESA 206
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGL-VDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
LF++M K N +++ +++ V+ +K F + E+ + + ++
Sbjct: 207 RGLFDLMPKE--KKNLISWNFMISGYAQRADGVNVAKKLFDEMPEK-----DLISWNSLI 259
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
D + K G +E+A + M + +V+ W + +
Sbjct: 260 DGYVKHGRMEDAKSLFNKMP-KRDVVTWATMV 290
>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Vitis vinifera]
Length = 635
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 194/327 (59%), Gaps = 4/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A LF+++P+R+ V+W M+ GY+K G + AR F+ MP R+V S +AM+A Y+ G
Sbjct: 272 AHHLFNQMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGHL 331
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L F +M+S + L PD T+ LS + LG G + H +I N + L+E++
Sbjct: 332 MEALNFFHDMLSRKELFPDNATLLITLSAIAQLGHFD--EGVALHCYIEDNGFSLSEKLG 389
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+DMYAKCG + AL VFE ++++++ W A+I G A G E A LF M+ VK
Sbjct: 390 VALIDMYAKCGSIDNALSVFEDIDDKSIDHWNAIIGGLAIHGLGEVAFELFMEMEKLFVK 449
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+++TF GVL AC H GLV EG F+++ + +EP++QHYGCMVD+ G+AG +EEA +
Sbjct: 450 PDDITFIGVLNACNHAGLVKEGLMCFELMRRVHKVEPKLQHYGCMVDILGRAGHVEEAKK 509
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+ M +EPN ++W + L+AC+ H+ F + E V K + + + + L+ ++Y
Sbjct: 510 FVEKMPIEPNDVVWRTLLSACRNHENFTIGEPVAKHLISV--DSYNPSSYVLLSNIYAGF 567
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
W R+R +M ++++K G S I
Sbjct: 568 GMWNDVYRIRMMMKQRDLKKIPGCSQI 594
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/358 (26%), Positives = 179/358 (50%), Gaps = 21/358 (5%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+F+ M V D FS +LK+C+ + +H + ++ S V++ L+ Y+
Sbjct: 109 IFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQIHGLLGRMEIGSDVFLQNCLMCLYL 168
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL--RNVASWSAMI 119
G AR+LFD + +R++V++N+MI GY K G V AR+ F+ MP+ +N+ SW++MI
Sbjct: 169 RCGCLGIARQLFDRMMKRDSVSFNSMIDGYVKHGMVKSARELFDVMPMEQKNLISWNSMI 228
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y + + GL++ E+ E D ++ +++ GC G M + H F N
Sbjct: 229 SGYARS---EEGLRVAWELFE-EMPKRDLISWNSMIDGCVKCGK----MENAHHLF---N 277
Query: 180 EWELNEQIA-TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ + ++ +VD YAK G + A +F+ M ER+VIS A++ G G+ +AL+
Sbjct: 278 QMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGHLMEALNF 337
Query: 239 F-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI-DEEYDLEPRIQHYGCMVDL 296
F +M+ + P+ T L+A G DEG I D + L ++ ++D+
Sbjct: 338 FHDMLSRKELFPDNATLLITLSAIAQLGHFDEGVALHCYIEDNGFSLSEKLG--VALIDM 395
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-VKPEN 353
+ K G ++ A V + + ++ W + + H ++A + + ++ VKP++
Sbjct: 396 YAKCGSIDNALSVFEDID-DKSIDHWNAIIGGLAIHGLGEVAFELFMEMEKLFVKPDD 452
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/331 (21%), Positives = 138/331 (41%), Gaps = 57/331 (17%)
Query: 35 IHHLHSHILKLGFISHVYVATSLLHEYVVTSFG----FARKLF-------DELPERNAVT 83
++ +HS ++ GFI++ + T ++ + +S FAR LF + N
Sbjct: 30 VNQIHSRLITTGFINNPSLTTRIILNFSSSSHKPLVEFARYLFMSRHFGRKHRKQDNPFL 89
Query: 84 WNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEG 143
WN +IK +S + EA +F M+ N G
Sbjct: 90 WNAIIKSFSHGEDPREA-------------------------------FVIFNLMLEN-G 117
Query: 144 LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKY 203
+ D+ + VL CS LG + G HG + + E + + L+ +Y +CG L
Sbjct: 118 VCVDKFSFSLVLKACSRLGLIK--EGMQIHGLLGRMEIGSDVFLQNCLMCLYLRCGCLGI 175
Query: 204 ALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263
A +F+ M +R+ +S+ ++I G G + A LF++M + N +++ +++
Sbjct: 176 ARQLFDRMMKRDSVSFNSMIDGYVKHGMVKSARELFDVMPME--QKNLISWNSMISGYAR 233
Query: 264 TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWG 323
+ +EG + + EE I + M+D K G +E A+ + M + +V+ W
Sbjct: 234 S---EEGLRVAWELFEEMPKRDLIS-WNSMIDGCVKCGKMENAHHLFNQMP-KRDVVSWA 288
Query: 324 SFLAACKEHKQFDMAERVIKQALRMVKPEND 354
+ + + + D+A + + PE D
Sbjct: 289 NMVDGYAKLGEIDIARGLFDEM-----PERD 314
>gi|124360491|gb|ABN08501.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 575
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 134/403 (33%), Positives = 233/403 (57%), Gaps = 22/403 (5%)
Query: 1 MQLFSQM-HRQSVPSDSFSILHILKSCTHFNNL----TVIHHLHSHILKLGFISHVYVAT 55
++LF+ M +V D + ++ SC+ + +++ L K+GF + +V T
Sbjct: 179 IRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDD---KVGFRPNYFVKT 235
Query: 56 SLLHEYV-VTSFGFARKLFDEL---PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRN 111
+LL + + A K+F++L R++V WN MI Y++ G++ A+ F++MP R+
Sbjct: 236 ALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRD 295
Query: 112 VASWSAMIAAYLNAGAYDPGLKLFREMISNE-GLTPDQMTIGAVLSGCSHLGSVGLLMGK 170
SW++MIA Y G +KLF EMIS+E PD++T+ +V S C HLG +GL G
Sbjct: 296 TVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGELGL--GN 353
Query: 171 SAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRG 230
A + N +++ + L++MY++CG ++ A+++F+ M R+++S+ LI G A G
Sbjct: 354 WAVSILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHG 413
Query: 231 YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHY 290
+ +++ L M+ G++P+ +T+ +LTAC H GL+DEG++ F+ I P + HY
Sbjct: 414 HGMESIELLSKMKEDGIEPDRITYIAILTACSHAGLLDEGQRLFESIK-----FPDVDHY 468
Query: 291 GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVK 350
CM+D+ G+AG LEEA ++I++M +EP+ I+GS L A HKQ ++ E + + V+
Sbjct: 469 ACMIDMLGRAGRLEEAMKLIQSMPMEPHAGIYGSLLNATSIHKQVELGELAAAKLFK-VE 527
Query: 351 PENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
P N G + L+ ++Y +W+ ++VR M Q V+K G S
Sbjct: 528 PHNSGN-YALLSNIYASAGRWKEGDKVRDTMRKQGVKKTTGLS 569
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/365 (27%), Positives = 166/365 (45%), Gaps = 75/365 (20%)
Query: 40 SHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFDELPER------------------- 79
+H+LK G+ YV +L Y FARKLFDE+P+R
Sbjct: 51 AHVLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEE 110
Query: 80 ----------------NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL 123
N +TW TMI G++K GN+ AR +F++MP R+V SW+AM++ Y
Sbjct: 111 EASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYA 170
Query: 124 NAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWEL 183
GA + ++LF +M+S + PD+ T V+S CS LG L K +
Sbjct: 171 QGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDP-CLSESIVRKLDDKVGFRP 229
Query: 184 NEQIATILVDMYAKCGFLKYALMVFEL--------------------------------- 210
N + T L+DM+AKCG L+ A +FE
Sbjct: 230 NYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFD 289
Query: 211 -MEERNVISWTALICGSAHRGYSEDALSLFEMMQAT--GVKPNEMTFTGVLTACVHTGLV 267
M +R+ +SW ++I G G S A+ LFE M ++ KP+E+T V +AC H G +
Sbjct: 290 KMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGEL 349
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
G ++ + ++ I Y +++++ + G +++A + + M +++ + + ++
Sbjct: 350 GLGNWAVSILKVNH-IQISISVYNSLINMYSRCGSMQDAVLIFQEMATR-DLVSYNTLIS 407
Query: 328 ACKEH 332
EH
Sbjct: 408 GFAEH 412
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 113/250 (45%), Gaps = 16/250 (6%)
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
+ LF+ M+ + + P+ ++ GS +L AH ++K+ ++ + + +
Sbjct: 16 VSLFKHMLQHCDIKPNASFYSVMMKSA---GSESMLF--LAH--VLKSGYDRDHYVRNGI 68
Query: 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE 251
+ +YAK G +++A +F+ M +R V W +I G G E+A +LF +M + N
Sbjct: 69 LGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEISRNV 128
Query: 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR 311
+T+T ++T G + R YF + E + + M+ + + G EE +
Sbjct: 129 ITWTTMITGHAKKGNLKTARMYFDKMPER-----SVVSWNAMLSGYAQGGAPEETIRLFN 183
Query: 312 TM----RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM 367
M ++P+ W + +++C ++E ++++ V + V T + D++
Sbjct: 184 DMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAK 243
Query: 368 NEKWEGAERV 377
E A ++
Sbjct: 244 CGNLEAAHKI 253
>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 595
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 132/397 (33%), Positives = 226/397 (56%), Gaps = 37/397 (9%)
Query: 1 MQLFSQMHRQS-VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+ L+ +M V D+ + +LK+ ++ + +HS +++ GF S +YV SLLH
Sbjct: 105 VSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETIHSVVIRSGFGSLIYVQNSLLH 164
Query: 60 EYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + G+V A F++MP +++ +W+++I
Sbjct: 165 LY------------------------------ANCGDVASAYKVFDKMPEKDLVAWNSVI 194
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ G + L L+ EM +G+ PD TI ++LS C+ +G+ L +GK H +++K
Sbjct: 195 NGFAENGKPEEALALYTEM-DLKGIKPDGFTIVSLLSACAKIGA--LTLGKRFHVYMIKV 251
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
N + +L+D+YA+CG ++ A +F+ M ++N +SWT+LI G A G ++A+ LF
Sbjct: 252 GLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELF 311
Query: 240 EMMQAT-GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
+ M++ G+ P E+TF G+L AC H G+V EG +YF+ + EEY +EPRI+H+GCMVDL
Sbjct: 312 KNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLA 371
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG +++AYE I M ++PNV+IW + L AC H D+AE + + + ++P N G +
Sbjct: 372 RAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSDLAE-LARMKILQLEP-NHSGDY 429
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y ++W +++RK ML VRK G S++
Sbjct: 430 VLLSNMYASEQRWSDVQKIRKQMLRDGVRKVPGHSLV 466
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 110/218 (50%), Gaps = 4/218 (1%)
Query: 111 NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGK 170
NV W+ +I Y G + L+REM ++ + PD T +L + V L G+
Sbjct: 84 NVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRL--GE 141
Query: 171 SAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRG 230
+ H ++++ + + L+ +YA CG + A VF+ M E+++++W ++I G A G
Sbjct: 142 TIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENG 201
Query: 231 YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHY 290
E+AL+L+ M G+KP+ T +L+AC G + G++ F + + L +
Sbjct: 202 KPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKR-FHVYMIKVGLTRNLHSS 260
Query: 291 GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
++DL+ + G +EEA + M ++ N + W S +
Sbjct: 261 NVLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLIVG 297
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 92/200 (46%), Gaps = 15/200 (7%)
Query: 170 KSAHGFIVKN-----EWELNEQIATILVDMYAKCGFLKYALMVFELMEER-NVISWTALI 223
+ H F ++N + EL + + LV + + + YA VF +E+ NV W LI
Sbjct: 34 RQIHAFSIRNGVSISDAELGKHLIFYLVSLPSPPP-MSYAHKVFSKIEKPINVFIWNTLI 92
Query: 224 CGSAHRGYSEDALSLFEMMQATG-VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD 282
G A G S A+SL+ M+A+G V+P+ T+ +L A V G ++
Sbjct: 93 RGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETIHSVVIRS-G 151
Query: 283 LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVI 342
I ++ L+ G + AY+V M E +++ W S + E+ + + A +
Sbjct: 152 FGSLIYVQNSLLHLYANCGDVASAYKVFDKMP-EKDLVAWNSVINGFAENGKPEEALALY 210
Query: 343 KQA-LRMVKPENDGGVFTLI 361
+ L+ +KP DG FT++
Sbjct: 211 TEMDLKGIKP--DG--FTIV 226
>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
Length = 568
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 120/339 (35%), Positives = 203/339 (59%), Gaps = 16/339 (4%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR+LFD +P ++ V MI G G + EAR+ F+ MP RNV +W++MI+ + G +
Sbjct: 106 ARQLFDMMPVKDVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTW 165
Query: 129 DPGLKLFRE------------MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
+K++ ++ EG+ P ++ +VLS C L S L G+ H +
Sbjct: 166 STMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLAS--LDHGRQVHSQL 223
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
V+++++++ ++++L+ MY KCG L A VF+ ++++ W ++I G A G+ E AL
Sbjct: 224 VRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKAL 283
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
+F M ++ + P+E+TF GVL+AC +TG V EG + F+ + +Y ++P+ +HY CMVDL
Sbjct: 284 EVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDL 343
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
G+AG L EA +I M +E + I+WG+ L AC+ HK D+AE K+ L++ +P N+ G
Sbjct: 344 LGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQL-EP-NNAG 401
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ +LY+ +W+ +RK M +N+RK+ G S I
Sbjct: 402 PYILLSNLYSSQSRWKDVVELRKTMRAKNLRKSPGCSWI 440
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 83/280 (29%), Positives = 145/280 (51%), Gaps = 32/280 (11%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
ARKLFD++PE N ++WN ++ GY ++G + EAR F++MP RNV SW+AMI Y+ G
Sbjct: 13 ARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLI 72
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLM-GKSAHGFIVKNEWELNEQI 187
+ LF M P++ V+S LG GL+ G+ + + + + +
Sbjct: 73 EEAELLFWRM-------PER----NVVSWTVMLG--GLIEDGRVDEARQLFDMMPVKDVV 119
Query: 188 A-TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSA-------------HRGYSE 233
A T ++D G L A +F+ M +RNV++WT++I G +G+
Sbjct: 120 ASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFEL 179
Query: 234 DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGC 292
+AL+LF +MQ GV+P+ + VL+ C +D GR+ + +++ ++D++ I
Sbjct: 180 EALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDID--IYVSSV 237
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
++ ++ K G L A V ++++W S +A +H
Sbjct: 238 LITMYIKCGDLVTAKRVFDRFS-SKDIVMWNSIIAGYAQH 276
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 109/229 (47%), Gaps = 43/229 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LFS M R+ V S++ +L C +L +HS +++ F +YV++ L+
Sbjct: 182 LALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITM 241
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y+ A+++FD ++ V WN++I GY++ G F E+
Sbjct: 242 YIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHG-------FGEK------------- 281
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV--GLLMGKSAHGFIV 177
L++F +M S+ + PD++T VLS CS+ G V GL + +S +
Sbjct: 282 -----------ALEVFHDMFSS-SIAPDEITFIGVLSACSYTGKVKEGLEIFES-----M 324
Query: 178 KNEWELNEQIA--TILVDMYAKCGFLKYALMVFELME-ERNVISWTALI 223
K++++++ + +VD+ + G L A+ + E M E + I W AL+
Sbjct: 325 KSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALL 373
>gi|357126462|ref|XP_003564906.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 582
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 120/327 (36%), Positives = 193/327 (59%), Gaps = 5/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR+LFDE P R+ V W +MI GY++ G + EAR FE MP RNV SWS ++ Y+ G
Sbjct: 225 ARELFDETPNRDLVCWCSMIDGYARQGRMDEARALFEEMPERNVISWSIVVDGYVRCGEP 284
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L+LF+ M+ G+ PD++ + C+ LG+ L G+ H ++ K + + +
Sbjct: 285 SEALELFQRMLRC-GIKPDRVAAVGAFTACAQLGA--LEQGRWLHSYLEKKKVLFDVVVQ 341
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
T L+DMY KCG L ++FE M +++V++W +I G A+ LF M+A G
Sbjct: 342 TALIDMYMKCGRLDLGKLIFESMPDKSVVTWNVMIIGLGTHSCGLHAVKLFYQMEAEGAP 401
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
++++ VLTAC H GL+ EG F + +++ ++P+++HYG +VDL G+AG L+ A
Sbjct: 402 IDDLSVLAVLTACTHAGLISEGLGIFHRMRKDFGMDPKVEHYGALVDLLGRAGHLDHARH 461
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
I TM +EP +WGS LAAC+ H+ ++AE +++ + +D GV+ L+ ++Y
Sbjct: 462 AIETMPMEPTPELWGSLLAACRSHRCVELAELSVERLASL--GADDFGVYVLLSNIYADE 519
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
W+G R+R+LM + ++K G SVI
Sbjct: 520 GMWDGVFRIRRLMSAEGMKKDIGRSVI 546
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 17/179 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF +M R + D + + +C L LHS++ K + V V T+L+
Sbjct: 288 LELFQRMLRCGIKPDRVAAVGAFTACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDM 347
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERM-----PLRNVAS 114
Y+ + +F+ +P+++ VTWN MI G A F +M P+ ++ S
Sbjct: 348 YMKCGRLDLGKLIFESMPDKSVVTWNVMIIGLGTHSCGLHAVKLFYQMEAEGAPIDDL-S 406
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH 173
A++ A +AG GL +F M + G+ P H G++ L+G++ H
Sbjct: 407 VLAVLTACTHAGLISEGLGIFHRMRKDFGMDPK----------VEHYGALVDLLGRAGH 455
>gi|297800868|ref|XP_002868318.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
lyrata]
gi|297314154|gb|EFH44577.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
lyrata]
Length = 1057
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 211/382 (55%), Gaps = 4/382 (1%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSF-GFARKLF 73
D F ++K+C + ++ + +H H + + + V +SL+ Y A+ +F
Sbjct: 41 DDFVFSALVKACANLGSIKLGKQVHCHFIVSEYSNDDVVKSSLVDMYAKCRLLDCAKAVF 100
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
D + +N ++W M+ GY+KSG EA + F R+P++N+ SW+A+I+ ++ +G
Sbjct: 101 DSIRVKNTISWTAMVSGYAKSGRKEEALELFRRLPVKNLYSWTALISGFVQSGKGLEAFS 160
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
+F EM D + + +++ C++L + + G+ HG ++ ++ I+ L+D
Sbjct: 161 VFTEMRRERVDILDPLVLSSIVGACANLAAS--IAGRQVHGLVIALGFDSCVFISNALID 218
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
MYAKC + A +F M R+V+SWT+LI G A G +E AL+L++ M + GVKPNE+T
Sbjct: 219 MYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDEMVSHGVKPNEVT 278
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
F G++ AC H G V +GR+ F+ + ++Y + P +QHY C++DL G++G L+EA +I TM
Sbjct: 279 FVGLIYACSHVGFVAKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTM 338
Query: 314 RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEG 373
P+ W + L+ACK Q M R+ + KP+ D + L+ ++Y W
Sbjct: 339 PFPPDEPTWAALLSACKRQGQGQMGVRIADHLVSSFKPK-DPSTYILLSNIYASASLWGK 397
Query: 374 AERVRKLMLNQNVRKARGSSVI 395
R+ + + VRK G S +
Sbjct: 398 VSEARRKLGDMEVRKDPGYSSV 419
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 123/267 (46%), Gaps = 42/267 (15%)
Query: 107 MPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGL 166
MP R+ +W++++ A A L +F + S+ GL PD A++ C++LGS+ L
Sbjct: 1 MPHRDHIAWASVLTALNQANLSGKTLWVFSSVGSSSGLRPDDFVFSALVKACANLGSIKL 60
Query: 167 LMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGS 226
GK H + +E+ ++ + + LVDMYAKC L A VF+ + +N ISWTA++ G
Sbjct: 61 --GKQVHCHFIVSEYSNDDVVKSSLVDMYAKCRLLDCAKAVFDSIRVKNTISWTAMVSGY 118
Query: 227 AHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF-KMIDEEYD-LE 284
A G E+AL LF + N ++T +++ V +G E F +M E D L+
Sbjct: 119 AKSGRKEEALELFRRLPVK----NLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILD 174
Query: 285 PRI------------------QHYG---------------CMVDLFGKAGFLEEAYEVIR 311
P + Q +G ++D++ K + A ++
Sbjct: 175 PLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFS 234
Query: 312 TMRLEPNVIIWGSFLAACKEHKQFDMA 338
MR +V+ W S + +H Q + A
Sbjct: 235 RMRHR-DVVSWTSLIVGMAQHGQAEKA 260
>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
Length = 802
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 135/401 (33%), Positives = 221/401 (55%), Gaps = 10/401 (2%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKL--GFISH--VYVATSL 57
+LF +M + VP D F+ +L +C + +H I +L F+ + V +L
Sbjct: 280 ELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNAL 339
Query: 58 LHEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
+ Y + AR++FD + ++ V+WNT++ GY +S + +A + FE MP +N SW
Sbjct: 340 VTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWM 399
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
M++ Y++ G + LKLF M + E + P T +S C LGS L GK HG +
Sbjct: 400 VMVSGYVHGGFSEDALKLFNRMRA-EDVKPCDYTYAGAISACGELGS--LKHGKQLHGHL 456
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
V+ +E + L+ MYA+CG +K A ++F +M + +SW A+I G+ +AL
Sbjct: 457 VQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREAL 516
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
LF+ M A G+ P+ ++F VLTAC H+GLVDEG +YF+ + ++ + P HY ++DL
Sbjct: 517 ELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDL 576
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
G+AG + EA ++I+TM EP IW + L+ C+ ++ Q +M P++D G
Sbjct: 577 LGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMT-PQHD-G 634
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
+ L+ + Y+ +W A RVRKLM ++ V+K G S I +
Sbjct: 635 TYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEA 675
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 106/383 (27%), Positives = 187/383 (48%), Gaps = 54/383 (14%)
Query: 11 SVPSDSFSILHILKSCTHFNNLTVIH--HLHSHILKLGFISHVYVATSLLHEYV----VT 64
S+ D +S +L + H N++V H L +LK G + V+ +L+ Y+ +
Sbjct: 152 SLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEALE 211
Query: 65 SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLN 124
+ ARK+ DE+P+++A+TW TM+ GY + G+V AR FE + ++ W+AMI+ Y++
Sbjct: 212 ATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVH 271
Query: 125 AGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN 184
+G +LFR M+ E + D+ T +VLS C++ G GKS HG I + +
Sbjct: 272 SGMVVEAFELFRRMVL-ERVPLDEFTFTSVLSACANAGFFA--HGKSVHGQITRLQPNFV 328
Query: 185 EQIA----TILVDMYAKCG-------------------------------FLKYALMVFE 209
+ A LV +Y+KCG L A+ VFE
Sbjct: 329 PEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFE 388
Query: 210 LMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
M +N +SW ++ G H G+SEDAL LF M+A VKP + T+ G ++AC G +
Sbjct: 389 EMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKH 448
Query: 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNV--IIWGSFLA 327
G++ + + E ++ ++ + G ++EA + M PN+ + W + ++
Sbjct: 449 GKQLHGHL-VQLGFEGSNSAGNALITMYARCGAVKEANLMFLVM---PNIDSVSWNAMIS 504
Query: 328 ACKEH----KQFDMAERVIKQAL 346
A +H + ++ +R++ + +
Sbjct: 505 ALGQHGHGREALELFDRMVAEGI 527
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 86/364 (23%), Positives = 153/364 (42%), Gaps = 46/364 (12%)
Query: 24 KSCTHFNNLTVIHHLHSHILKLGFI---SHVYVATSLLHEYVVT-SFGFARKLFDELPER 79
+S T + L + LH+ +L + H ++ L+H Y ++ A LF P
Sbjct: 29 RSLTSSSFLRALRCLHARLLTSALLHAPPHPHLTLRLIHLYTLSGDLPAAATLFRADPCP 88
Query: 80 NAVTWNTMIKGYSKSGNVCEARDFFERMP--LRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
A T +++ Y+ +G + A FF+ +P R+ +A+I+AY A P + +FR
Sbjct: 89 VAAT--SLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRS 146
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
++++ L PD + A+LS HL ++ + ++K+ ++ LV +Y K
Sbjct: 147 LLASGSLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMK 206
Query: 198 CGFL---KYALMVFELMEERNVISWT-------------------------------ALI 223
C L + A V + M +++ ++WT A+I
Sbjct: 207 CEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMI 266
Query: 224 CGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI---DEE 280
G H G +A LF M V +E TFT VL+AC + G G+ I
Sbjct: 267 SGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPN 326
Query: 281 YDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAER 340
+ E + +V L+ K G + A + M+ + +V+ W + L+ E D A
Sbjct: 327 FVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSK-DVVSWNTILSGYVESSCLDKAVE 385
Query: 341 VIKQ 344
V ++
Sbjct: 386 VFEE 389
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 106/252 (42%), Gaps = 49/252 (19%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF++M + V ++ + +C +L LH H+++LGF
Sbjct: 415 LKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGF------------- 461
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
E + N +I Y++ G V EA F MP + SW+AMI+
Sbjct: 462 -----------------EGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMIS 504
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF----I 176
A G L+LF M++ EG+ PD+++ VL+ C+H G V GF
Sbjct: 505 ALGQHGHGREALELFDRMVA-EGIYPDRISFLTVLTACNHSGLVD-------EGFQYFES 556
Query: 177 VKNEWEL--NEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSE 233
+K ++ + E T L+D+ + G + A + + M E W A++ G G E
Sbjct: 557 MKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDME 616
Query: 234 ----DALSLFEM 241
A LF+M
Sbjct: 617 LGAHAADQLFKM 628
>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 125/395 (31%), Positives = 218/395 (55%), Gaps = 7/395 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ R + ++FS +L C L + +H +L GF+S++ +++S++ Y
Sbjct: 182 LYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYS 241
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
AR LFDE+ ++ W T++ GY+K G++ A + F +MP +N SWSA+I+
Sbjct: 242 KCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISG 301
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y L F +M+ G+ P+Q T + L C+ + + L GK HG++++ +
Sbjct: 302 YARNSLGHEALDYFTKMMKF-GINPEQYTFSSCLCACASIAA--LKHGKQVHGYLIRTYF 358
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELM-EERNVISWTALICGSAHRGYSEDALSLFE 240
N + + L+DMY+KCG L+ + VF LM +++V+ W +I A G+ E A+ +F
Sbjct: 359 RCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFN 418
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M +G+KP+ +TF +L+AC H+GLV EG ++FK + ++ + P +HY C++DL G+A
Sbjct: 419 DMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYACLIDLLGRA 478
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G E + M +P+ +W + L C+ H ++ +V ++ + + KP++ +L
Sbjct: 479 GCFVELVNELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERVIEL-KPQSSAAYVSL 537
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
LY KWE E+VR+LM + +RK RG S I
Sbjct: 538 -ASLYAFLGKWESVEKVRELMDEKFIRKERGISWI 571
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 135/291 (46%), Gaps = 35/291 (12%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
ARK+FD++ RN +WN M+ GY+K G+V AR F+RM ++V SW+ ++ AY G +
Sbjct: 117 ARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCF 176
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ + L+R+ + + + VL C L L + K HG ++ + N ++
Sbjct: 177 NEAIGLYRD-FRRLDMGFNAFSFAGVLILCVKLKE--LQLAKQVHGQVLVAGFLSNLVLS 233
Query: 189 TILVDMYAKCGFLKYALMVFE-------------------------------LMEERNVI 217
+ +VD Y+KCG ++ A +F+ M E+N +
Sbjct: 234 SSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPV 293
Query: 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI 277
SW+ALI G A +AL F M G+ P + TF+ L AC + G++ +
Sbjct: 294 SWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYL 353
Query: 278 DEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
Y ++D++ K G LE + V M + +V++W + ++A
Sbjct: 354 IRTY-FRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISA 403
>gi|359476090|ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Vitis vinifera]
Length = 515
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 129/382 (33%), Positives = 224/382 (58%), Gaps = 6/382 (1%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLF 73
D F+ ++K C + +H H K G S+ + SL+ YV S A ++F
Sbjct: 90 DKFTFPFVVKXCAGLMCYNLGKQVHGHAFKFGPKSNTVIENSLVEMYVKCDSLDDAHRVF 149
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
+E+ ER+AV+WNT+I G+ + G + AR FE + + + SW+A+++ Y G + L+
Sbjct: 150 EEMTERDAVSWNTLISGHVRLGQMRRARAIFEELQDKTIFSWTAIVSGYARIGCHAVALE 209
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
FR M + + D++++ +VL C+ LG++ L GK H + K + + + L++
Sbjct: 210 FFRRMQMVD-IELDEISLVSVLPACAQLGALEL--GKWIHIYADKAGFLRDICVCNALIE 266
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
+YAK G + +F M ER+VISW+ +I G A+ G + +A+ LF+ MQ V+PN +T
Sbjct: 267 VYAKRGSMDEGRRLFHKMNERDVISWSTMIVGLANHGRAREAIELFQEMQKAKVEPNIIT 326
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
F G+L+AC H GL++EG YF+ ++ + ++EP ++HYGC+V+L G +G L++A E+I+ M
Sbjct: 327 FVGLLSACAHAGLLNEGLGYFESMERDDNIEPGVEHYGCLVNLLGLSGRLDQALELIKKM 386
Query: 314 RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEG 373
++P+ IWG ++C+ H ++ ++ L + +P++ G TL +LY KW+G
Sbjct: 387 PMKPDSDIWGLLSSSCRSHGNLEIVAIAMEHLLEL-EPDDTGNYITL-SNLYADLGKWDG 444
Query: 374 AERVRKLMLNQNVRKARGSSVI 395
R+RKLM ++ + K G S I
Sbjct: 445 VSRMRKLMSSKYMNKTPGCSSI 466
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 121/294 (41%), Gaps = 42/294 (14%)
Query: 103 FFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISN----EGLTPDQMTIGAVLSGC 158
F+R+ N ++AMI AY + Y + + ++M+ + PD+ T V+ C
Sbjct: 42 LFKRVADPNAFLYNAMIRAYKHNKVYILAITVHKQMLGHSHGENPXFPDKFTFPFVVKXC 101
Query: 159 SHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVI- 217
+ L L GK HG K + N I LV+MY KC L A VFE M ER+ +
Sbjct: 102 AGLMCYNL--GKQVHGHAFKFGPKSNTVIENSLVEMYVKCDSLDDAHRVFEEMTERDAVS 159
Query: 218 ------------------------------SWTALICGSAHRGYSEDALSLFEMMQATGV 247
SWTA++ G A G AL F MQ +
Sbjct: 160 WNTLISGHVRLGQMRRARAIFEELQDKTIFSWTAIVSGYARIGCHAVALEFFRRMQMVDI 219
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
+ +E++ VL AC G ++ G K+ + ++ I +++++ K G ++E
Sbjct: 220 ELDEISLVSVLPACAQLGALELG-KWIHIYADKAGFLRDICVCNALIEVYAKRGSMDEGR 278
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
+ M E +VI W + + H + A I+ M K + + + T +
Sbjct: 279 RLFHKMN-ERDVISWSTMIVGLANHGR---AREAIELFQEMQKAKVEPNIITFV 328
>gi|356564579|ref|XP_003550529.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Glycine max]
Length = 576
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 149/480 (31%), Positives = 243/480 (50%), Gaps = 108/480 (22%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+ QMHR S+ S ++ LKSC +++ +H + GF + VYV T+LL
Sbjct: 89 VSLYVQMHRTSLCPTSHAVSSALKSCARIHDMLCGMSIHGQVHVFGFNTCVYVQTALLDL 148
Query: 61 YV-VTSFGFARKLFDEL-------------------------------PERNAVTWNTMI 88
Y + G ARK+FDE+ P ++ ++WN+MI
Sbjct: 149 YSKIGDMGTARKVFDEMANKSVVSWNSLLSGYVKAGNLDEAQYLFSEIPGKDVISWNSMI 208
Query: 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY-------------------- 128
GY+K+GNV +A F+RMP RN++SW+AMIA +++ G+
Sbjct: 209 SGYAKAGNVGQACTLFQRMPERNLSSWNAMIAGFIDCGSLVSAREFFDTMPRRNCVSWIT 268
Query: 129 -----------DPGLKLFREM--------------------------ISNEGLTPD---- 147
D KLF +M + N+ L D
Sbjct: 269 MIAGYSKGGDVDSARKLFDQMDHKDLLSYNAMIACYAQNSKPKEALELFNDMLKQDIYVH 328
Query: 148 --QMTIGAVLSGCSHLGSVGLLMGKSAH----GFIVKNEWELNEQIATILVDMYAKCGFL 201
+MT+ +V+S CS LG + +H G + L++ +AT L+D+YAKCG +
Sbjct: 329 PDKMTLASVISACSQLGDLEHWWWIESHMNDFGIV------LDDHLATALIDLYAKCGSI 382
Query: 202 KYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261
A +F + +R++++++A+I G G + DA+ LFE M A + PN +T+TG+LTA
Sbjct: 383 DKAYELFHNLRKRDLVAYSAMIYGCGINGKASDAIKLFEQMLAECIGPNLVTYTGLLTAY 442
Query: 262 VHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVII 321
H GLV++G + F + ++Y L P I HYG MVDLFG+AG+L+EAY++I M ++PN +
Sbjct: 443 NHAGLVEKGYQCFNSM-KDYGLVPSIDHYGIMVDLFGRAGYLDEAYKLILNMPMQPNAGV 501
Query: 322 WGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLM 381
WG+ L AC+ H ++ E ++ +++ + G +L+ +Y EKW+ A+++RK M
Sbjct: 502 WGALLLACRLHNNVELGEIAVQHCIKL--ETDTTGYCSLLSSIYATVEKWDDAKKLRKGM 559
>gi|15221713|ref|NP_174428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169458|sp|Q9C866.1|PPR65_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31430
gi|12322531|gb|AAG51260.1|AC027135_1 PPR-repeat protein [Arabidopsis thaliana]
gi|332193234|gb|AEE31355.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 570
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 141/399 (35%), Positives = 227/399 (56%), Gaps = 13/399 (3%)
Query: 3 LFSQMHRQS-VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+F +M ++S + D +I+ L +C+ NL + ++ ++ F V + +L+ +
Sbjct: 134 VFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVT-EFEMSVRIGNALVDMF 192
Query: 62 V-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
AR +FD + ++N W +M+ GY +G + EAR FER P+++V W+AM+
Sbjct: 193 CKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMN 252
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y+ +D L+LFR M G+ PD + ++L+GC+ G+ L GK HG+I +N
Sbjct: 253 GYVQFNRFDEALELFRCM-QTAGIRPDNFVLVSLLTGCAQTGA--LEQGKWIHGYINENR 309
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+++ + T LVDMYAKCG ++ AL VF ++ER+ SWT+LI G A G S AL L+
Sbjct: 310 VTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYY 369
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ GV+ + +TF VLTAC H G V EGRK F + E ++++P+ +H C++DL +A
Sbjct: 370 EMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLIDLLCRA 429
Query: 301 GFLEEAYEVIRTMRLEPN---VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE-NDGG 356
G L+EA E+I MR E + V ++ S L+A + + +AERV A ++ K E +D
Sbjct: 430 GLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAERV---AEKLEKVEVSDSS 486
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
TL+ +Y +WE VR+ M + +RK G S I
Sbjct: 487 AHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSI 525
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 92/358 (25%), Positives = 161/358 (44%), Gaps = 68/358 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF ++ Q + D+F++ +LKS + +H + +K G YV+ SL+
Sbjct: 31 LALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKAGLEFDSYVSNSLMGM 90
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + K+FDE+P+R+ V+WN +I
Sbjct: 91 YASLGKIEITHKVFDEMPQRDVVSWNGLI------------------------------- 119
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
++Y+ G ++ + +F+ M L D+ TI + LS CS L + L +G+ + F+V
Sbjct: 120 SSYVGNGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKN--LEIGERIYRFVV-T 176
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICG-------------- 225
E+E++ +I LVDM+ KCG L A VF+ M ++NV WT+++ G
Sbjct: 177 EFEMSVRIGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLF 236
Query: 226 ------------SAHRGYS-----EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
+ GY ++AL LF MQ G++P+ +LT C TG ++
Sbjct: 237 ERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALE 296
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
+G+ I+E ++ +VD++ K G +E A EV ++ E + W S +
Sbjct: 297 QGKWIHGYINENRVTVDKVVGTA-LVDMYAKCGCIETALEVFYEIK-ERDTASWTSLI 352
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 136/274 (49%), Gaps = 12/274 (4%)
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
++ M+ + + ++ L LF E+ +GL PD T+ VL L V + G+ HG
Sbjct: 14 YNKMLKSLADGKSFTKVLALFGEL-RGQGLYPDNFTLPVVLKSIGRLRKV--IEGEKVHG 70
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
+ VK E + ++ L+ MYA G ++ VF+ M +R+V+SW LI G ED
Sbjct: 71 YAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFED 130
Query: 235 ALSLFEMM-QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293
A+ +F+ M Q + +K +E T L+AC ++ G + ++ + E+++ RI + +
Sbjct: 131 AIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSVRIGN--AL 188
Query: 294 VDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353
VD+F K G L++A V +MR + NV W S + + D A + +++ P
Sbjct: 189 VDMFCKCGCLDKARAVFDSMR-DKNVKCWTSMVFGYVSTGRIDEARVLFERS-----PVK 242
Query: 354 DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVR 387
D ++T + + Y +++ A + + M +R
Sbjct: 243 DVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIR 276
>gi|255551485|ref|XP_002516788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543876|gb|EEF45402.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 710
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 134/387 (34%), Positives = 230/387 (59%), Gaps = 9/387 (2%)
Query: 13 PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS-FGFARK 71
P+D ++ ++ C +T L S ++K+GF + ++ ++++H Y A
Sbjct: 328 PNDVM-MVDLISGCGRTMAMTEGQQLLSAVVKMGFDCYDFIQSTIIHLYAACGRINEACL 386
Query: 72 LFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPG 131
F + N +WN +I GY ++ + A + F MP R+V SWS MI+ Y +
Sbjct: 387 QFRIGSKENVASWNALIAGYVRNRMIDRAMELFNEMPERDVFSWSTMISGYTQNEQPNLA 446
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
L+LF +M+++ G+ P+++T+ +VLS + G+ L G+ AH ++ N +++ ++ +
Sbjct: 447 LELFHKMVAS-GIKPNEVTMVSVLSAIATSGT--LKEGRWAHEYVHNNSITVSDNLSAAI 503
Query: 192 VDMYAKCGFLKYALMVF-ELMEERNVIS-WTALICGSAHRGYSEDALSLFEMMQATGVKP 249
+DMYAKCG + AL VF E+ E+ + +S W A+ICG A G++ +L +F ++ +K
Sbjct: 504 IDMYAKCGSINNALEVFYEIREKASTVSPWNAIICGLAVHGHANLSLKIFSDLERRHIKL 563
Query: 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEV 309
N +TF GVLTAC H GLV+ G+++F + E+ ++P I+HYGCMVDL G+AG LEEA E+
Sbjct: 564 NAITFIGVLTACCHVGLVESGKRHFMSMKSEHSIDPDIKHYGCMVDLLGRAGRLEEAEEM 623
Query: 310 IRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNE 369
IR+M ++ +V+IWG+ LAAC+ H D+ ER + R+ +P + G L+ ++Y
Sbjct: 624 IRSMPMKADVVIWGTLLAACRTHGNVDVGERAAENLARL-EPSH-GASRVLLSNMYADAG 681
Query: 370 KWEGAERVRKLMLNQNVRKARGSSVIS 396
KWE A VR+ M + +++ G S ++
Sbjct: 682 KWEDAFLVRRAMQSHRMQRLPGYSGVA 708
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/380 (28%), Positives = 186/380 (48%), Gaps = 37/380 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF QM V + +I ++ + +HF + LH ++K+ F V V+T+LL
Sbjct: 183 VELFKQMRNVGVVPNEVTIATLVSAYSHFGGIWACRMLHGLVIKMLFEEFVLVSTNLLRM 242
Query: 61 YVV-TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y V +S AR LFDE+PE+N V+WN M+ GYSK+G V AR FER+P +++ +W +I
Sbjct: 243 YCVCSSLVEARALFDEMPEKNIVSWNVMLNGYSKAGFVDSARVVFERIPNKDLVTWGTII 302
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y+ + L ++R MIS G P+ + + ++SGC ++ + G+ +VK
Sbjct: 303 DGYVRVERINEALMMYRSMIS-AGWEPNDVMMVDLISGCGR--TMAMTEGQQLLSAVVKM 359
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR---------- 229
++ + I + ++ +YA CG + A + F + + NV SW ALI G
Sbjct: 360 GFDCYDFIQSTIIHLYAACGRINEACLQFRIGSKENVASWNALIAGYVRNRMIDRAMELF 419
Query: 230 ----------------GYSED-----ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
GY+++ AL LF M A+G+KPNE+T VL+A +G +
Sbjct: 420 NEMPERDVFSWSTMISGYTQNEQPNLALELFHKMVASGIKPNEVTMVSVLSAIATSGTLK 479
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVI-IWGSFLA 327
EGR + + + ++D++ K G + A EV +R + + + W + +
Sbjct: 480 EGRWAHEYVHNN-SITVSDNLSAAIIDMYAKCGSINNALEVFYEIREKASTVSPWNAIIC 538
Query: 328 ACKEHKQFDMAERVIKQALR 347
H +++ ++ R
Sbjct: 539 GLAVHGHANLSLKIFSDLER 558
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 95/385 (24%), Positives = 179/385 (46%), Gaps = 44/385 (11%)
Query: 19 ILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGF-ARKLFDELP 77
++ LK C+ L+ +H + K G S+ ++ SL++ Y A+ +FD P
Sbjct: 69 LVSALKFCSDHLFLSQGKQIHCLVSKSGLGSNNFIQNSLINMYGKCGLLVDAKSIFDVCP 128
Query: 78 ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
+ V++N MI GY KSG + A + F+ MP++ S++ MI + ++ ++LF++
Sbjct: 129 RSDPVSYNVMISGYVKSGQLDYACELFDEMPVKGCVSYTTMIMGFSQNECWNQAVELFKQ 188
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
M N G+ P+++TI ++S SH G G+ + HG ++K +E ++T L+ MY
Sbjct: 189 M-RNVGVVPNEVTIATLVSAYSHFG--GIWACRMLHGLVIKMLFEEFVLVSTNLLRMYCV 245
Query: 198 CGFLKYALMVFELMEERNVISWTALICGSAHRGYSE------------------------ 233
C L A +F+ M E+N++SW ++ G + G+ +
Sbjct: 246 CSSLVEARALFDEMPEKNIVSWNVMLNGYSKAGFVDSARVVFERIPNKDLVTWGTIIDGY 305
Query: 234 -------DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK-MIDEEYDLEP 285
+AL ++ M + G +PN++ +++ C T + EG++ ++ +D
Sbjct: 306 VRVERINEALMMYRSMISAGWEPNDVMMVDLISGCGRTMAMTEGQQLLSAVVKMGFDCYD 365
Query: 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQA 345
IQ ++ L+ G + EA R E NV W + +A ++ D A + +
Sbjct: 366 FIQ--STIIHLYAACGRINEACLQFRIGSKE-NVASWNALIAGYVRNRMIDRAMELFNEM 422
Query: 346 LRMVKPENDGGVFTLICDLYTMNEK 370
PE D ++ + YT NE+
Sbjct: 423 -----PERDVFSWSTMISGYTQNEQ 442
>gi|222624763|gb|EEE58895.1| hypothetical protein OsJ_10524 [Oryza sativa Japonica Group]
Length = 901
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 127/375 (33%), Positives = 218/375 (58%), Gaps = 11/375 (2%)
Query: 22 ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGF-ARKLFDELPERN 80
+LK+C +N+ I +HSH++KLG +S+ + T L Y+ A KLF + E +
Sbjct: 157 LLKACAKCSNIYAIMEIHSHLVKLGLLSNQRIVTHLFKLYIDHGRVMEACKLFWLMLEWS 216
Query: 81 AVTW--NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM 138
A + N M+ G+ K G + +A F+RMP++++ SW++MIA + +F ++
Sbjct: 217 AEPFYGNLMLMGFLKCGQIDKAYQIFKRMPVKDLVSWNSMIAGTARNSCLKDAMNIFSKL 276
Query: 139 ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198
+ N GL PD + +VLS C+ G+ G H + + E+N +++ LVDMYAKC
Sbjct: 277 V-NSGLVPDGFSFSSVLSACAQAGA--RCYGMWVHQLMAELGLEMNHILSSSLVDMYAKC 333
Query: 199 GFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL 258
G + A+ +F ++ +V W +I G A G DA+ F M++ G+ P+ +TF +L
Sbjct: 334 GRIDVAIGIFMTIKRNHVSVWNTMIGGLAAHGLGSDAVMFFREMESEGLVPDGVTFVALL 393
Query: 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPN 318
TAC H+G+V+E R+YF+ + +Y + PRI+HYG MVD +AG L+EAY++++TM ++P+
Sbjct: 394 TACSHSGMVEEARQYFEAMTTKYSITPRIEHYGAMVDTLSRAGLLDEAYDLVKTMNVKPD 453
Query: 319 VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVR 378
+IW + L+AC ++Q + E +K+ G +TL+ ++Y+ +WE +E V
Sbjct: 454 AVIWRALLSACCRYRQTKLGEITVKEIAF-----QGSGDYTLLSNIYSSANRWEDSEEVW 508
Query: 379 KLMLNQNVRKARGSS 393
K + +RK++G S
Sbjct: 509 KERKKKGIRKSKGLS 523
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 92/228 (40%), Gaps = 41/228 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
M +FS++ + D FS +L +C +H + +LG
Sbjct: 270 MNIFSKLVNSGLVPDGFSFSSVLSACAQAGARCYGMWVHQLMAELGL------------- 316
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
E N + ++++ Y+K G + A F + +V+ W+ MI
Sbjct: 317 -----------------EMNHILSSSLVDMYAKCGRIDVAIGIFMTIKRNHVSVWNTMIG 359
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI--VK 178
G + FREM S EGL PD +T A+L+ CSH G M + A + +
Sbjct: 360 GLAAHGLGSDAVMFFREMES-EGLVPDGVTFVALLTACSHSG-----MVEEARQYFEAMT 413
Query: 179 NEWELNEQIA--TILVDMYAKCGFLKYALMVFELMEER-NVISWTALI 223
++ + +I +VD ++ G L A + + M + + + W AL+
Sbjct: 414 TKYSITPRIEHYGAMVDTLSRAGLLDEAYDLVKTMNVKPDAVIWRALL 461
>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 692
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 130/384 (33%), Positives = 213/384 (55%), Gaps = 5/384 (1%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLF 73
D F I + + + LH+H + + V +SL+ Y S RK+F
Sbjct: 186 DHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVF 245
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
D + +N+V W ++ GY+ +G EA F MP RN+ +W+A+I+ +N G ++
Sbjct: 246 DSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVE 305
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
LF EM + D + V+ G + L + ++G+ HG ++ + N + L+D
Sbjct: 306 LFVEMRRDGVRIDDAFVLSIVIGGSADLAA--FVLGRQLHGSTMRLGFLSNMIVGNALID 363
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
MY+KC + A VFE + R+VISWT ++ G A G +E+AL+L++ M G KPNE+T
Sbjct: 364 MYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVT 423
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
F G++ AC H GLV +GR+ F+ + EY + PR+QHY C +DL ++G L EA E++ TM
Sbjct: 424 FVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTM 483
Query: 314 RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEG 373
EP+ WG+ L+AC ++K +M R+ + L + +P+ D + L+ ++Y +N KW+
Sbjct: 484 PYEPDEATWGALLSACTKYKDAEMCIRISDKLLEL-RPK-DSSTYILLSNVYAVNGKWDS 541
Query: 374 AERVRKLMLNQNVRKARGSSVISS 397
+VRK M+ +RK G S I +
Sbjct: 542 VAKVRKCMIGLEIRKEPGYSWIEA 565
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 94/180 (52%), Gaps = 6/180 (3%)
Query: 86 TMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLT 145
++ Y+KS + +A F+ P R++ +S+++ A ++ + + L + R M+S + L
Sbjct: 125 ALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALH 184
Query: 146 PDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYAL 205
PD I +V S + L S L G+ H V + + ++ + + LVDMY KCG
Sbjct: 185 PDHFVISSVASVFARLRSRRL--GRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGR 242
Query: 206 MVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG 265
VF+ M +N + WTAL+ G A G SE+AL LF M N +T +++ V+TG
Sbjct: 243 KVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGR----NLFAWTALISGLVNTG 298
>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
Length = 603
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 128/329 (38%), Positives = 200/329 (60%), Gaps = 11/329 (3%)
Query: 69 ARKLFDEL--PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAG 126
A +LFDE+ RN+VTWN MI Y + G++ AR F MP RNV +W++MIA Y G
Sbjct: 155 ALRLFDEMLGAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNG 214
Query: 127 AYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ 186
++LF+EMI+ + LTPD++T+ +V+S C HLG+ L +G F+ +N+ +L+
Sbjct: 215 QSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGA--LELGNWVVRFLTENQIKLSIS 272
Query: 187 IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
++ MY++CG ++ A VF+ M R+V+S+ LI G A G+ +A++L M+ G
Sbjct: 273 GHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGG 332
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
++P+ +TF GVLTAC H GL++EGRK F+ I +P I HY CMVDL G+ G LE+A
Sbjct: 333 IEPDRVTFIGVLTACSHAGLLEEGRKVFESIK-----DPAIDHYACMVDLLGRVGELEDA 387
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366
+ M +EP+ ++GS L A + HKQ ++ E + + +P+N G F L+ ++Y
Sbjct: 388 KRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFEL-EPDNSGN-FILLSNIYA 445
Query: 367 MNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+W+ ER+R+ M V+K G S +
Sbjct: 446 SAGRWKDVERIREAMKKGGVKKTTGWSWV 474
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 162/346 (46%), Gaps = 63/346 (18%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY- 61
++ QM V D+F ++KS T H+H+LKLG S +V +++ Y
Sbjct: 17 MYEQMQGCGVRPDAFVYPILIKSAG-----TGGIGFHAHVLKLGHGSDAFVRNAVIDMYA 71
Query: 62 --------VVTSF------GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERM 107
+V+ + G A+ LFD +PERN +TW M+ GY+K ++ AR +F+ M
Sbjct: 72 RKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCM 131
Query: 108 PLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL 167
P R+V SW+AM++ Y G + L+LF EM+ G + +T A++S
Sbjct: 132 PERSVVSWNAMLSGYAQNGLAEEALRLFDEML---GAYRNSVTWNAMISA---------- 178
Query: 168 MGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSA 227
Y + G L A +F M RNV++W ++I G A
Sbjct: 179 ---------------------------YMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYA 211
Query: 228 HRGYSEDALSLF-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR 286
G S A+ LF EM+ A + P+E+T V++AC H G ++ G + + E ++
Sbjct: 212 QNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTEN-QIKLS 270
Query: 287 IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
I + M+ ++ + G +E+A V + M +V+ + + ++ H
Sbjct: 271 ISGHNAMIFMYSRCGSMEDAKRVFQEMATR-DVVSYNTLISGFAAH 315
>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
[Vitis vinifera]
Length = 788
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 129/377 (34%), Positives = 209/377 (55%), Gaps = 35/377 (9%)
Query: 50 HVYVATSLLHEYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP 108
+V T+++ YV AR++F+++ R+ V WNTMI GYS+ G + EA F++M
Sbjct: 325 NVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMV 384
Query: 109 LRNVASWSAMIAAYLNAGAYDPGLKLFREM------------------------------ 138
+++ SW+ M+A+Y G D +K+F EM
Sbjct: 385 KKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFML 444
Query: 139 ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198
+ +EG PDQ T LS C+HL + L +GK H ++K+ + + ++ L+ MYAKC
Sbjct: 445 MGHEGQKPDQSTFACGLSSCAHLAA--LQVGKQLHQLVMKSGYATDLFVSNALITMYAKC 502
Query: 199 GFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL 258
G + A ++F+ ++ +V+SW +LI A G +AL LF M+ GV P+E+TF G+L
Sbjct: 503 GSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGIL 562
Query: 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPN 318
+AC H GL+D+G K FK + + Y++EP +HY CMVDL G+AG LEEA++++R M++ N
Sbjct: 563 SACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINAN 622
Query: 319 VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVR 378
IWG+ L AC+ H ++A+ ++ L +P + L+ ++ +W+ RVR
Sbjct: 623 AGIWGALLGACRIHGNLELAKFAAEKLLEF-EPHKTSN-YVLLSNMQAEAGRWDEVARVR 680
Query: 379 KLMLNQNVRKARGSSVI 395
+LM + K G S I
Sbjct: 681 RLMKEKGAEKQPGWSWI 697
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 138/264 (52%), Gaps = 21/264 (7%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A LF E+PE+N+++W T+I GY + G + EAR +MP RNVA+ +AMI+ Y+
Sbjct: 283 AISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRM 342
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF---IVKNEWELNE 185
D ++F N+ D + +++G S G M ++ H F + K+ N
Sbjct: 343 DDARQIF-----NQISIRDVVCWNTMIAGYSQCGR----MDEALHLFKQMVKKDIVSWNT 393
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
+A+ YA+ G + A+ +FE M+E+N++SW +LI G G DAL F +M
Sbjct: 394 MVAS-----YAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHE 448
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE-YDLEPRIQHYGCMVDLFGKAGFLE 304
G KP++ TF L++C H + G++ +++ + Y + + + ++ ++ K G +
Sbjct: 449 GQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSN--ALITMYAKCGSIS 506
Query: 305 EAYEVIRTMRLEPNVIIWGSFLAA 328
A + + + +V+ W S +AA
Sbjct: 507 SAELLFKDID-HFDVVSWNSLIAA 529
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 132/279 (47%), Gaps = 21/279 (7%)
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
F AR+LFD +P ++ V+WN+M+ GY+++G + FFE M R+V SW+ M+ ++
Sbjct: 156 FDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEV 215
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
G + + F E I N P+ ++ +L G + G + + ++N N
Sbjct: 216 GDLNSSWEFF-EKIPN----PNTVSWVTMLCGFARFGKIAEAR-RLFDQMPIRNVVAWNA 269
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
IA Y + + A+ +F M E+N ISWT +I G G ++A L M
Sbjct: 270 MIAA-----YVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYR 324
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305
V T +++ V +D+ R+ F I + + M+ + + G ++E
Sbjct: 325 NVAAQ----TAMISGYVQNKRMDDARQIFNQISIR-----DVVCWNTMIAGYSQCGRMDE 375
Query: 306 AYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
A + + M ++ +++ W + +A+ + Q D A ++ ++
Sbjct: 376 ALHLFKQM-VKKDIVSWNTMVASYAQVGQMDAAIKIFEE 413
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/319 (25%), Positives = 147/319 (46%), Gaps = 27/319 (8%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A K+F + +N VT N+MI ++K+G + +AR F+ MP RN+ SW++MIAAYL+
Sbjct: 34 AIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRV 93
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF-IVKNEWELNEQI 187
+ +LF +M + + + M +G + K+ + F ++ +W N
Sbjct: 94 EEARQLFDKMPTRDLYSWTLMITCYTRNG---------ELAKARNLFNLLPYKW--NPVC 142
Query: 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
+V YAK A +F+ M ++++SW +++ G G L FE M V
Sbjct: 143 CNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDV 202
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
+++ ++ V G ++ ++F+ I P + M+ F + G + EA
Sbjct: 203 ----VSWNLMVDGFVEVGDLNSSWEFFEKIP-----NPNTVSWVTMLCGFARFGKIAEAR 253
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM 367
+ M + NV+ W + +AA ++ D A +L M PE + +T + + Y
Sbjct: 254 RLFDQMPIR-NVVAWNAMIAAYVQNCHVDEA-----ISLFMEMPEKNSISWTTVINGYVR 307
Query: 368 NEKWEGAERVRKLMLNQNV 386
K + A ++ M +NV
Sbjct: 308 MGKLDEARQLLNQMPYRNV 326
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 68/129 (52%), Gaps = 5/129 (3%)
Query: 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFDELPERNA 81
L SC H L V LH ++K G+ + ++V+ +L+ Y S A LF ++ +
Sbjct: 461 LSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDV 520
Query: 82 VTWNTMIKGYSKSGNVCEARDFFERMPLRNVA----SWSAMIAAYLNAGAYDPGLKLFRE 137
V+WN++I Y+ +GN EA F +M + VA ++ +++A + G D GLKLF+
Sbjct: 521 VSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKC 580
Query: 138 MISNEGLTP 146
M+ + P
Sbjct: 581 MVQAYNIEP 589
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 71/151 (47%), Gaps = 11/151 (7%)
Query: 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE 251
+ K G + A+ VF+ M +N ++ ++I A G DA LF+ M + N
Sbjct: 22 ITQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMP----QRNI 77
Query: 252 MTFTGVLTACVHTGLVDEGRKYF-KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI 310
+++ ++ A +H V+E R+ F KM + + + M+ + + G L +A +
Sbjct: 78 VSWNSMIAAYLHNDRVEEARQLFDKMPTRD------LYSWTLMITCYTRNGELAKARNLF 131
Query: 311 RTMRLEPNVIIWGSFLAACKEHKQFDMAERV 341
+ + N + + +A +++QFD A R+
Sbjct: 132 NLLPYKWNPVCCNAMVAGYAKNRQFDEARRL 162
>gi|218186878|gb|EEC69305.1| hypothetical protein OsI_38371 [Oryza sativa Indica Group]
Length = 560
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 131/414 (31%), Positives = 223/414 (53%), Gaps = 38/414 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGF-ISHVYVATSLLH 59
+ LF+ M ++F++ ++K C+ + +H+ + K G S V+V +LL
Sbjct: 102 VALFALMLWSGPRPNAFTVTSVIKCCSKVRAVHEGLQVHAFLAKAGLGCSSVHVGAALLD 161
Query: 60 EY-VVTSFGFARKLFDELP-------------------------------ERNAVTWNTM 87
Y + G AR++FDE+P ER+ ++WNT+
Sbjct: 162 LYGNIGLVGDARRVFDEMPVKNVVVGNTMVACNVRAGDMGAAREVFDGMAERDPISWNTL 221
Query: 88 IKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD 147
+ GY G+ R+ F+ M +RNV SW+ MIAA G+ +K+F M + G PD
Sbjct: 222 MSGYLHLGDTATVRELFDEMTVRNVNSWNTMIAACSEEGSLADTVKVFNRMRAT-GFEPD 280
Query: 148 QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMV 207
T+ ++S C+ LGS L + HG + K+ E+N + L+DMYAKCG + A +
Sbjct: 281 AATMAVLMSACAQLGS--LTIAGQVHGLLQKSCVEMNCHVQNSLIDMYAKCGCISQAQFL 338
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
F ++ +S+ +I A G++ DAL LF M +G++P+ +TF GVL+AC H GLV
Sbjct: 339 FTETYPKDTVSYNVMIIAFAQHGHARDALDLFNAMVDSGLQPDAVTFLGVLSACAHAGLV 398
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
+ G+ YF+++ Y ++ HY C+VDL+G+AG +EEA+ ++TM ++P+ +WG+ L
Sbjct: 399 EYGKNYFELMKTTYAVQQSPDHYACVVDLYGRAGLIEEAHCFVKTMPVKPHAGVWGALLN 458
Query: 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLM 381
AC++H D+ E K+ +R ++P+N G + L+ + ++W+ E V+ M
Sbjct: 459 ACRKHCHVDVGEIAAKELIR-IEPKNPGN-YVLLRNTLARGQQWDAVEDVQLSM 510
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 24/174 (13%)
Query: 188 ATILVDMYAKCGFLKYALMVFELME--ERNVISWTALICGSAHRGYSE---------DAL 236
A V + A ++A VF+ + NV WTA I A S +A+
Sbjct: 43 ARAAVALVASSSSPRHARAVFDSVPAASANVYLWTATISAYARHTSSSSSHALEVAGEAV 102
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG-CMVD 295
+LF +M +G +PN T T V+ C V EG + + + L H G ++D
Sbjct: 103 ALFALMLWSGPRPNAFTVTSVIKCCSKVRAVHEGLQVHAFL-AKAGLGCSSVHVGAALLD 161
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK--------EHKQFD-MAER 340
L+G G + +A V M ++ NV++ G+ + AC + FD MAER
Sbjct: 162 LYGNIGLVGDARRVFDEMPVK-NVVV-GNTMVACNVRAGDMGAAREVFDGMAER 213
>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 650
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 149/440 (33%), Positives = 233/440 (52%), Gaps = 55/440 (12%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ ++ M ++ D F+ LK T L L +H +K GF S+++V + +H
Sbjct: 92 VSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHGKELLNHAVKHGFDSNLFVQKAFIHM 151
Query: 61 YVVTSF-GFARKLFDELPERNAVTWNTMIKGYSK-------------------------- 93
+ + A K+FD VTWN M+ GY++
Sbjct: 152 FSLCGIVDLAHKVFDMGDACEVVTWNIMLSGYNRVKQFKISKMLLVLSACSKLKDLEWGK 211
Query: 94 -----------------SGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFR 136
G + EA+ F+ M R+V SW+AMI YL + L LFR
Sbjct: 212 HIFKYINGGIVEHMFAACGEMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALFR 271
Query: 137 EM-ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY 195
EM +SN + PD+ T+ ++L C+ LG+ L +G+ I KN + + + LVDMY
Sbjct: 272 EMQMSN--VKPDEFTMVSILIACALLGA--LELGEWVKTCIDKNSNKNDSFVGNALVDMY 327
Query: 196 AKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT 255
KCG ++ A VF+ M +++ +WT +I G A G+ E+AL++F M V P+E+T+
Sbjct: 328 FKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEEALAMFSNMIEASVTPDEITYI 387
Query: 256 GVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRL 315
GVL AC +VD+G+ +F + ++ ++P + HYGCMVDL G G LEEA EVI M +
Sbjct: 388 GVLCAC----MVDKGKSFFTNMTMQHGIKPTVTHYGCMVDLLGCVGCLEEALEVIVNMPV 443
Query: 316 EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAE 375
+PN I+WGS L AC+ HK +A+ KQ L + +PEN G V+ L+C++Y ++KWE
Sbjct: 444 KPNSIVWGSPLGACRVHKNVQLADMAAKQILEL-EPEN-GAVYVLLCNIYAASKKWENLC 501
Query: 376 RVRKLMLNQNVRKARGSSVI 395
+VRKLM+ + ++K G S++
Sbjct: 502 QVRKLMMERGIKKTPGCSLM 521
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 146/355 (41%), Gaps = 79/355 (22%)
Query: 18 SILHILKSCTHFNNLTVIHHLHSHILKLGFIS-----HVYVATSLLHEYVVTSFGFARKL 72
S + +L+ C L IH SH +K+G S + +A HE + +A ++
Sbjct: 9 SPISLLEKCKSMYQLKQIH---SHTIKMGLSSDPLFRNRVIAFCCAHES--GNMNYAHQV 63
Query: 73 FDELPERNAVTWNTMIKGYSK---------------SGNVCEAR--------DFFERMPL 109
FD +P + WNTMIKGYSK + N+ R F M L
Sbjct: 64 FDTIPHPSMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMAL 123
Query: 110 R----------------NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIG- 152
+ N+ A I + G D K+F + E +T + M G
Sbjct: 124 QHGKELLNHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGY 183
Query: 153 ------------AVLSGCSHLGSV--GLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198
VLS CS L + G + K +G IV++ M+A C
Sbjct: 184 NRVKQFKISKMLLVLSACSKLKDLEWGKHIFKYINGGIVEH--------------MFAAC 229
Query: 199 GFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL 258
G + A VF+ M+ R+V+SWTA+I G + AL+LF MQ + VKP+E T +L
Sbjct: 230 GEMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSIL 289
Query: 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
AC G ++ G ID+ + +VD++ K G + +A +V + M
Sbjct: 290 IACALLGALELGEWVKTCIDKNSNKNDSFVG-NALVDMYFKCGNVRKAKKVFKEM 343
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 116/270 (42%), Gaps = 33/270 (12%)
Query: 93 KSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIG 152
+SGN+ A F+ +P ++ W+ MI Y + G+ ++ M+++ + PD+ T
Sbjct: 53 ESGNMNYAHQVFDTIPHPSMFIWNTMIKGYSKISHPENGVSMYLLMLTSN-IKPDRFTFP 111
Query: 153 AVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME 212
L G + + L GK VK+ ++ N + + M++ CG + A VF++ +
Sbjct: 112 FSLKGFTR--DMALQHGKELLNHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGD 169
Query: 213 ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK 272
V++W ++ GY+ + K ++M VL+AC ++ G+
Sbjct: 170 ACEVVTWNIML-----SGYN----------RVKQFKISKMLL--VLSACSKLKDLEWGKH 212
Query: 273 YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
FK I+ G + +F G ++EA V M+ +V+ W + +
Sbjct: 213 IFKYING-----------GIVEHMFAACGEMDEAQGVFDNMKTR-DVVSWTAMIDGYLRM 260
Query: 333 KQFDMAERVIKQ-ALRMVKPENDGGVFTLI 361
F A + ++ + VKP+ V LI
Sbjct: 261 NHFIGALALFREMQMSNVKPDEFTMVSILI 290
>gi|357152230|ref|XP_003576051.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Brachypodium distachyon]
Length = 468
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 147/399 (36%), Positives = 214/399 (53%), Gaps = 43/399 (10%)
Query: 4 FSQMHRQSVPSDSFSILH----ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
F +HR+S S H +LK+ L V +H+ ++K G YVA L+
Sbjct: 100 FFSLHRRSGSSSYSPGRHTFPFLLKASARLA-LPVSQQIHALVVKHGLHLDTYVANGLVR 158
Query: 60 EYVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y V G ARK+FD LPER+ V + TM+ GY+
Sbjct: 159 AYSVAGLIGVARKVFDGLPERSTVVYTTMVSGYT-------------------------- 192
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
LN G Y+ + F EMI NEG P + + +VLS C+ S GL++G+ H I
Sbjct: 193 ----LN-GCYEDAMGAFGEMI-NEGFEPGDVVLASVLSACARSESGGLVIGRRVHNIIEM 246
Query: 179 N--EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
E + ++T LVDMYAK ++ A+ VF+ M ER +W ALI G AH G+ + AL
Sbjct: 247 RGVEAPVGVILSTALVDMYAKNAAIEEAVTVFKGMPERRTATWNALISGLAHHGHGKYAL 306
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
+F+ M GV PN TF GVL+A +G++DE RK F+ + +++ L P IQHYGCMVDL
Sbjct: 307 VMFQQMLQEGVPPNATTFVGVLSAYCLSGMIDEARKAFRSM-KDFGLTPSIQHYGCMVDL 365
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
G++G L EA E+IR M E + +IWG+ L AC+ H D+A R + L++ PEN G
Sbjct: 366 LGRSGLLVEAEEMIRGMTCEADTMIWGALLTACRNHGNIDIALRTALEILKL-DPENH-G 423
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
V+ ++ ++Y +W+ +R+RK+M + K GSS +
Sbjct: 424 VYVVLSNIYADAGRWQDVDRLRKVMKGALLSKIPGSSAV 462
>gi|357507465|ref|XP_003624021.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499036|gb|AES80239.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 632
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 134/403 (33%), Positives = 233/403 (57%), Gaps = 22/403 (5%)
Query: 1 MQLFSQM-HRQSVPSDSFSILHILKSCTHFNNL----TVIHHLHSHILKLGFISHVYVAT 55
++LF+ M +V D + ++ SC+ + +++ L K+GF + +V T
Sbjct: 236 IRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDD---KVGFRPNYFVKT 292
Query: 56 SLLHEYV-VTSFGFARKLFDEL---PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRN 111
+LL + + A K+F++L R++V WN MI Y++ G++ A+ F++MP R+
Sbjct: 293 ALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRD 352
Query: 112 VASWSAMIAAYLNAGAYDPGLKLFREMISNE-GLTPDQMTIGAVLSGCSHLGSVGLLMGK 170
SW++MIA Y G +KLF EMIS+E PD++T+ +V S C HLG +GL G
Sbjct: 353 TVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGELGL--GN 410
Query: 171 SAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRG 230
A + N +++ + L++MY++CG ++ A+++F+ M R+++S+ LI G A G
Sbjct: 411 WAVSILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHG 470
Query: 231 YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHY 290
+ +++ L M+ G++P+ +T+ +LTAC H GL+DEG++ F+ I P + HY
Sbjct: 471 HGMESIELLSKMKEDGIEPDRITYIAILTACSHAGLLDEGQRLFESIK-----FPDVDHY 525
Query: 291 GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVK 350
CM+D+ G+AG LEEA ++I++M +EP+ I+GS L A HKQ ++ E + + V+
Sbjct: 526 ACMIDMLGRAGRLEEAMKLIQSMPMEPHAGIYGSLLNATSIHKQVELGELAAAKLFK-VE 584
Query: 351 PENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
P N G + L+ ++Y +W+ ++VR M Q V+K G S
Sbjct: 585 PHNSGN-YALLSNIYASAGRWKEGDKVRDTMRKQGVKKTTGLS 626
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/365 (27%), Positives = 166/365 (45%), Gaps = 75/365 (20%)
Query: 40 SHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFDELPER------------------- 79
+H+LK G+ YV +L Y FARKLFDE+P+R
Sbjct: 108 AHVLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEE 167
Query: 80 ----------------NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL 123
N +TW TMI G++K GN+ AR +F++MP R+V SW+AM++ Y
Sbjct: 168 EASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYA 227
Query: 124 NAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWEL 183
GA + ++LF +M+S + PD+ T V+S CS LG L K +
Sbjct: 228 QGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGD-PCLSESIVRKLDDKVGFRP 286
Query: 184 NEQIATILVDMYAKCGFLKYALMVFEL--------------------------------- 210
N + T L+DM+AKCG L+ A +FE
Sbjct: 287 NYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFD 346
Query: 211 -MEERNVISWTALICGSAHRGYSEDALSLFEMMQAT--GVKPNEMTFTGVLTACVHTGLV 267
M +R+ +SW ++I G G S A+ LFE M ++ KP+E+T V +AC H G +
Sbjct: 347 KMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGEL 406
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
G ++ + ++ I Y +++++ + G +++A + + M +++ + + ++
Sbjct: 407 GLGNWAVSILKVNH-IQISISVYNSLINMYSRCGSMQDAVLIFQEMATR-DLVSYNTLIS 464
Query: 328 ACKEH 332
EH
Sbjct: 465 GFAEH 469
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 113/250 (45%), Gaps = 16/250 (6%)
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
+ LF+ M+ + + P+ ++ GS +L AH ++K+ ++ + + +
Sbjct: 73 VSLFKHMLQHCDIKPNASFYSVMMKSA---GSESMLF--LAH--VLKSGYDRDHYVRNGI 125
Query: 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE 251
+ +YAK G +++A +F+ M +R V W +I G G E+A +LF +M + N
Sbjct: 126 LGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEISRNV 185
Query: 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR 311
+T+T ++T G + R YF + E + + M+ + + G EE +
Sbjct: 186 ITWTTMITGHAKKGNLKTARMYFDKMPER-----SVVSWNAMLSGYAQGGAPEETIRLFN 240
Query: 312 TM----RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM 367
M ++P+ W + +++C ++E ++++ V + V T + D++
Sbjct: 241 DMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAK 300
Query: 368 NEKWEGAERV 377
E A ++
Sbjct: 301 CGNLEAAHKI 310
>gi|224056897|ref|XP_002299078.1| predicted protein [Populus trichocarpa]
gi|222846336|gb|EEE83883.1| predicted protein [Populus trichocarpa]
Length = 488
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 127/382 (33%), Positives = 212/382 (55%), Gaps = 6/382 (1%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT-SFGFARKLF 73
D+F+ +LK+C+H +H I+K G + ++ +SL+H Y + S A ++
Sbjct: 90 DNFTYTFVLKACSHLKAPFEGKQVHCQIIKAGIVPDTHIHSSLIHMYTNSGSIDDAERVL 149
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
E E N + N MI GY G V +AR F+ M ++ ASWSA+I Y G + L
Sbjct: 150 GEFSEENTLAKNAMISGYLTEGRVDKARKMFDDMAAKDAASWSALITGYTKNGMHTEALA 209
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
LF++M+ + + P++ + ++LS C LG+ L G+ H +I K ++ ++ T L+D
Sbjct: 210 LFQDMMVSH-ILPNEAALVSLLSACGQLGT--LHQGRWIHAYIDKTRVLMSTKLTTALID 266
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
MYAK G ++ +F+ M R+V++W +I A G++ LF+ M A G++PN++
Sbjct: 267 MYAKSGSIECGYGLFQKMARRDVVTWGVMISAFAIHGHASKCFQLFDEMLADGIRPNKVI 326
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
F +L+AC H G V+EGR+YF ++ + ++P I+HYGCMVDL G+AG L +A ++I +M
Sbjct: 327 FVAILSACSHAGCVEEGRQYFSQMEHGFGIKPSIEHYGCMVDLLGRAGLLADAEQLILSM 386
Query: 314 RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEG 373
+PN IIWGS L AC+ H + + + +P G L ++ + E
Sbjct: 387 PKQPNSIIWGSLLGACRTHNDLKRGTWAFENLMEL-EP-TSGDRHKLAGLMFANAGEKEE 444
Query: 374 AERVRKLMLNQNVRKARGSSVI 395
A ++RK++ + + GSS I
Sbjct: 445 AAKIRKMIHEKEMVTTCGSSFI 466
>gi|224113417|ref|XP_002316490.1| predicted protein [Populus trichocarpa]
gi|222865530|gb|EEF02661.1| predicted protein [Populus trichocarpa]
Length = 492
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 131/398 (32%), Positives = 217/398 (54%), Gaps = 41/398 (10%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F +M R+ P F++ ++ +C ++ LH+ +K + V+V T+L
Sbjct: 84 IDIFLEMQREGSPCSEFTVSSVVCACAAKGDVFFCRQLHAFAIKAVVDADVFVGTAL--- 140
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
I Y+K G++ +A FE MP RN +WS+++A
Sbjct: 141 ---------------------------IDVYAKCGSIEDASCVFEGMPERNDVTWSSIVA 173
Query: 121 AYLNAGAYDPGLKLF---REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
++ Y+ GL LF +EM GL +Q I +V+ C+ L + L+ G+ H +
Sbjct: 174 GFVQNELYEEGLVLFARGKEM----GLENNQFMISSVIRACAGLAA--LIEGRQVHAIVC 227
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
+ + N +A+ LVDMYAKCG ++ A ++F +E++NV+ W A+I G A S + ++
Sbjct: 228 RTGFGPNNFVASALVDMYAKCGSIEEAYVLFCNIEKKNVVLWNAIISGFAKHACSSEVMN 287
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LFE MQ TG++P+E+T+ VL+ACVH GLVD+GR YF ++ E+++ P + HY CMVD+
Sbjct: 288 LFEEMQQTGMQPDEVTYVAVLSACVHVGLVDKGRSYFDLMTREHNVSPNVLHYSCMVDIL 347
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
G+ G + EA+E++ M +WGS LA+C+ H ++AE K M +P+ GG
Sbjct: 348 GRGGLVHEAHELMTKMPFAATASMWGSLLASCRIHGNLELAEIAAKNLFEM-EPDR-GGN 405
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ + Y ++KWE A + RK + + K RG S I
Sbjct: 406 YVLLANTYAASKKWEEAAKARKSLKGSEILKERGKSWI 443
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 130/255 (50%), Gaps = 5/255 (1%)
Query: 78 ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
E + +T N ++ YSK G + A F+ +P R++ SW+ MI + G + + +F E
Sbjct: 30 ETDTLTSNMLMNMYSKCGLIRRACKVFDEIPERSMVSWNIMIGTCVQNGEEEKAIDIFLE 89
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
M EG + T+ +V+ C+ G V + H F +K + + + T L+D+YAK
Sbjct: 90 M-QREGSPCSEFTVSSVVCACAAKGDV--FFCRQLHAFAIKAVVDADVFVGTALIDVYAK 146
Query: 198 CGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGV 257
CG ++ A VFE M ERN ++W++++ G E+ L LF + G++ N+ + V
Sbjct: 147 CGSIEDASCVFEGMPERNDVTWSSIVAGFVQNELYEEGLVLFARGKEMGLENNQFMISSV 206
Query: 258 LTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEP 317
+ AC + EGR+ ++ P +VD++ K G +EEAY + + +
Sbjct: 207 IRACAGLAALIEGRQVHAIVC-RTGFGPNNFVASALVDMYAKCGSIEEAYVLFCNIE-KK 264
Query: 318 NVIIWGSFLAACKEH 332
NV++W + ++ +H
Sbjct: 265 NVVLWNAIISGFAKH 279
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 83/163 (50%), Gaps = 4/163 (2%)
Query: 167 LMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGS 226
+ GK+ HG +++ E + + +L++MY+KCG ++ A VF+ + ER+++SW +I
Sbjct: 15 ITGKACHGQVIRLGLETDTLTSNMLMNMYSKCGLIRRACKVFDEIPERSMVSWNIMIGTC 74
Query: 227 AHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKM-IDEEYDLEP 285
G E A+ +F MQ G +E T + V+ AC G V R+ I D +
Sbjct: 75 VQNGEEEKAIDIFLEMQREGSPCSEFTVSSVVCACAAKGDVFFCRQLHAFAIKAVVDADV 134
Query: 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
+ ++D++ K G +E+A V M E N + W S +A
Sbjct: 135 FVG--TALIDVYAKCGSIEDASCVFEGMP-ERNDVTWSSIVAG 174
>gi|356515150|ref|XP_003526264.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g10330-like [Glycine max]
Length = 503
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 134/402 (33%), Positives = 220/402 (54%), Gaps = 13/402 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F+ M P +S + +LK + L + LHS LK G +S ++ T+LL
Sbjct: 105 LSIFTHMLANQAPPNSHTFPPLLK----ISPLPLGATLHSQTLKRGLLSDGFILTTLLAL 160
Query: 61 YVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y AR +F+E P V N MI +S +G++ A FERMP R+V SW+ ++
Sbjct: 161 YARNHLLPHARMVFEEFPMFCIVACNAMINAFSMNGDMEAAVALFERMPRRDVFSWTTVV 220
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLT-----PDQMTIGAVLSGCSHL-GSVGLLMGKSAH 173
+ G + ++ FR M++++ + P++ T +VLS C++L G L GK H
Sbjct: 221 DGFALKGNFGASIRFFRNMMNHKDVVAGLVKPNEATCSSVLSSCANLDGKAALDWGKQVH 280
Query: 174 GFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE 233
G++V NE +L + T L+ +Y K G L A VF +M R V +W A+I A G +
Sbjct: 281 GYVVMNEVKLGVFVGTSLIHLYGKMGCLSNAENVFRVMVVREVCTWNAMISSLASHGREK 340
Query: 234 DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293
+AL +F+ M+ G+KPN +TF VLTAC LV EG F+ + ++ +EP ++HYGC+
Sbjct: 341 NALDMFDRMKLHGLKPNSITFAAVLTACARGNLVREGLDLFRSMWYDFGIEPNLKHYGCV 400
Query: 294 VDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353
+DL G+AG +EEA E+IR M +P+ + G+FL AC+ H ++ E + K LR+
Sbjct: 401 IDLLGRAGHIEEAAEIIRNMPFQPDASVLGAFLGACRIHGAIELGEEIGKNMLRL--QTQ 458
Query: 354 DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G + L+ + E+W+ A +R+ ++ ++K S++
Sbjct: 459 HSGQYVLLSSMNAEKERWDRAANLRREIMEAGIQKIPAYSML 500
>gi|224066769|ref|XP_002302206.1| predicted protein [Populus trichocarpa]
gi|222843932|gb|EEE81479.1| predicted protein [Populus trichocarpa]
Length = 681
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 136/392 (34%), Positives = 220/392 (56%), Gaps = 6/392 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF+ M ++ + D ++ IL +C+ N +H++ K+G I VA++ + Y
Sbjct: 291 LFNDMQKKGLKVDFSTLATILSACSSLCNSQHGKQMHAYACKVGLICDNVVASAFIDAYS 350
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
S A KLF EL + + N+MI YS SG + +A+ F MP +++ SW++MI
Sbjct: 351 KCGSLNDACKLFSELKTYDTILLNSMITVYSNSGKIEDAKQIFNTMPSKSLISWNSMIVG 410
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
G L LF M++ L ++ + +V+S C+ + S+ L A +V
Sbjct: 411 LSQNGCPVEALDLFC-MMNKLDLRMNRFNLTSVISACASISSLELGEQIFARATVVG--L 467
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ +E I+T LVD Y KCGF++ +F+ M + + ISW +++ G A G+ +AL+LF
Sbjct: 468 DSDEVISTSLVDFYCKCGFIEIGRKLFDTMMKSDEISWNSMLMGYATNGHGLEALTLFNE 527
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M+ GV+P E+TFTGVL+AC H GLV EG ++F ++ +Y ++P I+HY CMVDLF +AG
Sbjct: 528 MRHAGVRPTEITFTGVLSACDHCGLVKEGWRWFNIMQYDYHIDPGIEHYSCMVDLFARAG 587
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
LEEA +I+ M E + +W S L C H + D+ E+V +Q + + PEN G + +
Sbjct: 588 CLEEAMNLIKRMPFEADASMWSSVLRGCMAHGEKDLGEKVAQQIIEL-DPEN-SGAYVQL 645
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
++ + WE + VRK+M + V+K G S
Sbjct: 646 SSIFATSGDWESSALVRKVMQERQVQKYPGYS 677
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 101/396 (25%), Positives = 154/396 (38%), Gaps = 107/396 (27%)
Query: 37 HLHSHILKLGFI-SHVYVATSLLHEYV-VTSFGFARKLFDELPERNAVTWNTMI------ 88
LH K G I S + +A LL Y S A KLFDE+P RN +WNTMI
Sbjct: 26 QLHILFFKKGLIQSTLSLANRLLQMYTRCGSMTDAHKLFDEMPHRNCFSWNTMIEGYMKS 85
Query: 89 -------------------------KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL 123
G++K+G + AR F MP RN W++MI +Y
Sbjct: 86 GNKERSIRLFDMMSNKNDYSWNVVFSGFAKAGEMEIARRLFNEMPNRNGVVWNSMIHSYA 145
Query: 124 NAGAYDPGLKLFREMISNEGLTP------DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
G+ ++LF+E+ L P D + V+ C+ LG + GK H I+
Sbjct: 146 RNGSPREAVRLFKEL----NLDPLDKSCCDTFVLATVIGACTDLGEIQC--GKQIHARIL 199
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED--- 234
+ EL+ + + L+++Y KCG L A V MEE + S +ALI G A+ G D
Sbjct: 200 IDNMELDSVLTSSLINLYGKCGDLDSAHCVLNTMEEPDDFSLSALITGYANHGRMNDARR 259
Query: 235 ----------------------------ALSLFEMMQATGVKPNEMTFTGVLTAC----- 261
A LF MQ G+K + T +L+AC
Sbjct: 260 AFYRKSNSCVVVWNSLISGYVTNNEEIEAFLLFNDMQKKGLKVDFSTLATILSACSSLCN 319
Query: 262 -----------VHTGLVDEGRKYFKMID---------EEYDLEPRIQHY-----GCMVDL 296
GL+ + ID + L ++ Y M+ +
Sbjct: 320 SQHGKQMHAYACKVGLICDNVVASAFIDAYSKCGSLNDACKLFSELKTYDTILLNSMITV 379
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
+ +G +E+A ++ TM ++I W S + ++
Sbjct: 380 YSNSGKIEDAKQIFNTMP-SKSLISWNSMIVGLSQN 414
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/345 (24%), Positives = 146/345 (42%), Gaps = 39/345 (11%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLF 73
D+F + ++ +CT + +H+ IL + +SL++ Y A +
Sbjct: 171 DTFVLATVIGACTDLGEIQCGKQIHARILIDNMELDSVLTSSLINLYGKCGDLDSAHCVL 230
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
+ + E + + + +I GY+ G + +AR F R V W+++I+ Y+
Sbjct: 231 NTMEEPDDFSLSALITGYANHGRMNDARRAFYRKSNSCVVVWNSLISGYVTNNEEIEAFL 290
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
LF +M +GL D T+ +LS CS L + GK H + K + +A+ +D
Sbjct: 291 LFNDM-QKKGLKVDFSTLATILSACSSLCNSQ--HGKQMHAYACKVGLICDNVVASAFID 347
Query: 194 MYAKCGFLKYAL-------------------------------MVFELMEERNVISWTAL 222
Y+KCG L A +F M +++ISW ++
Sbjct: 348 AYSKCGSLNDACKLFSELKTYDTILLNSMITVYSNSGKIEDAKQIFNTMPSKSLISWNSM 407
Query: 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF-KMIDEEY 281
I G + G +AL LF MM ++ N T V++AC ++ G + F +
Sbjct: 408 IVGLSQNGCPVEALDLFCMMNKLDLRMNRFNLTSVISACASISSLELGEQIFARATVVGL 467
Query: 282 DLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
D + I +VD + K GF+E ++ TM ++ + I W S L
Sbjct: 468 DSDEVISTS--LVDFYCKCGFIEIGRKLFDTM-MKSDEISWNSML 509
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 116/261 (44%), Gaps = 49/261 (18%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
N +++ Y++ G++ +A F+ MP RN SW+ MI Y+ +G + ++LF +M+SN
Sbjct: 45 NRLLQMYTRCGSMTDAHKLFDEMPHRNCFSWNTMIEGYMKSGNKERSIRLF-DMMSN--- 100
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
KN++ N ++ +AK G ++ A
Sbjct: 101 ---------------------------------KNDYSWN-----VVFSGFAKAGEMEIA 122
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP---NEMTFTGVLTAC 261
+F M RN + W ++I A G +A+ LF+ + + + V+ AC
Sbjct: 123 RRLFNEMPNRNGVVWNSMIHSYARNGSPREAVRLFKELNLDPLDKSCCDTFVLATVIGAC 182
Query: 262 VHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVI 320
G + G++ + +++ + +L+ + +++L+GK G L+ A+ V+ TM EP+
Sbjct: 183 TDLGEIQCGKQIHARILIDNMELDSVLT--SSLINLYGKCGDLDSAHCVLNTME-EPDDF 239
Query: 321 IWGSFLAACKEHKQFDMAERV 341
+ + H + + A R
Sbjct: 240 SLSALITGYANHGRMNDARRA 260
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 70/161 (43%), Gaps = 15/161 (9%)
Query: 187 IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
+A L+ MY +CG + A +F+ M RN SW +I G G E ++ LF+MM
Sbjct: 43 LANRLLQMYTRCGSMTDAHKLFDEMPHRNCFSWNTMIEGYMKSGNKERSIRLFDMMS--- 99
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
N+ ++ V + G ++ R+ F + + + M+ + + G EA
Sbjct: 100 -NKNDYSWNVVFSGFAKAGEMEIARRLFNEMPNRNGVV-----WNSMIHSYARNGSPREA 153
Query: 307 YEVIRTMRLEP------NVIIWGSFLAACKEHKQFDMAERV 341
+ + + L+P + + + + AC + + +++
Sbjct: 154 VRLFKELNLDPLDKSCCDTFVLATVIGACTDLGEIQCGKQI 194
>gi|225457861|ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g77010, mitochondrial-like [Vitis vinifera]
Length = 685
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 131/400 (32%), Positives = 225/400 (56%), Gaps = 6/400 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF+ M R+ V D + +L +C+ + +H+H+ K+GF + + + ++L+
Sbjct: 290 LELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDM 349
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A KLF +L + + N+MI YS G + +AR F+ MP +++ SW++MI
Sbjct: 350 YSKCRRPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMI 409
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ L LF EM + GL D+ ++ V+S C+ + S+ L A I+
Sbjct: 410 VGFSQNACPIEALDLFCEM-NKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIG- 467
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
E ++ I+T LVD Y KCG +++ +F+ M + + + W +++ G A G+ +AL++F
Sbjct: 468 -LEFDQIISTSLVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVF 526
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+ M++ GV+P ++TF GVL+AC H GLV+EGRK+F + +Y + P I+HY CMVDL+ +
Sbjct: 527 DQMRSVGVQPTDITFVGVLSACDHCGLVEEGRKWFYAMKLDYHINPGIEHYSCMVDLYAR 586
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG LE+A +I M L+ + +W S L C H + ++V K+ + + PEN G +
Sbjct: 587 AGLLEDAMNLIEQMPLKADTSMWSSVLRGCVAHGNNILGKKVAKRIIDL-DPEN-SGAYV 644
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLS 399
+ +Y E W + +VRKLM ++ + K G S SL+
Sbjct: 645 QLSGIYATFEDWGRSAQVRKLMYDKKIPKVPGCSWADSLT 684
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 113/439 (25%), Positives = 182/439 (41%), Gaps = 103/439 (23%)
Query: 12 VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVY-VATSLLHEYV-VTSFGFA 69
V D S+ L SC ++ ++ LH LK G + V + LL Y S A
Sbjct: 2 VDLDLHSLARQLGSCNNYGSIYRGRLLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREA 61
Query: 70 RKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYD 129
++LF+E+P+RN +WNTMI+GY KSG+ ++ + F+ MP ++ SW+ +I+ + G +
Sbjct: 62 QQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLE 121
Query: 130 PGLKLFREMISNEG---------------------------LTP------DQMTIGAVLS 156
+LF EM G L P D + V+
Sbjct: 122 VARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVG 181
Query: 157 GCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNV 216
C++LG+ L GK H IV +E E + + + LV++Y KCG + A V LM+E +
Sbjct: 182 ACTNLGA--LDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDA 239
Query: 217 ISWTALICGSAHRGYSED-------------------------------ALSLFEMMQAT 245
S +ALI G A G D AL LF M+
Sbjct: 240 FSLSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMRRK 299
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI-------------------------DEE 280
GV+ + TF VL+AC G++D+G + + D+
Sbjct: 300 GVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDA 359
Query: 281 YDLEPRIQHY-----GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH--- 332
L +Q Y M+ ++ G +++A ++ TM ++I W S + ++
Sbjct: 360 CKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMP-SKSLISWNSMIVGFSQNACP 418
Query: 333 -KQFDMAERVIKQALRMVK 350
+ D+ + K LRM K
Sbjct: 419 IEALDLFCEMNKLGLRMDK 437
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 84/202 (41%), Gaps = 16/202 (7%)
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
I L+ MY++C ++ A +FE M +RN SW +I G G +L LF+ M
Sbjct: 43 SIGNRLLQMYSRCNSMREAQQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMP-- 100
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305
+ ++ V++ G ++ R+ F + + + + M+ + G +E
Sbjct: 101 --HKDAFSWNVVISGFAKEGNLEVARRLFNEMPWKNGIA-----WNSMIHGYACNGRPKE 153
Query: 306 AYEVIRTMRLEP------NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
A + + + L P + + + + AC D ++ I + + + E D + +
Sbjct: 154 AVGLFKDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQ-IHARIVVDEVEFDSVLGS 212
Query: 360 LICDLYTMNEKWEGAERVRKLM 381
+ +LY + A V LM
Sbjct: 213 SLVNLYGKCGDIDSANHVLNLM 234
>gi|357155797|ref|XP_003577241.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Brachypodium distachyon]
Length = 519
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 144/407 (35%), Positives = 225/407 (55%), Gaps = 19/407 (4%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
++ S + R P D S L +L S T + + LH+ +L+LGF+SH +A +LL Y
Sbjct: 123 RMLSSLRRIHSP-DRLSFLPLLGSST---SPRLHSALHALLLRLGFLSHHAIALALLKPY 178
Query: 62 VVTSFGFARKLFDELPE--RNAVTWNTMIKGYSKSGNVCEARDFFERM-----PLRNVAS 114
+ AR LFDE+P+ R AV++NT+I ++ ++ AR F+ M R+V S
Sbjct: 179 HLP---HARTLFDEMPQKIRCAVSYNTLITACFRTRDILAARRLFDEMQRHNRSRRSVVS 235
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
W+AMIA G D ++ F +M+ + PD T+ A L C G+ G G+ AH
Sbjct: 236 WNAMIAGCARCGRDDMAVRYFEDMVREGEVAPDDGTLAAALPACGRTGNAG--AGRWAHE 293
Query: 175 FIVKNEW-ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE 233
+ + + + + ++DMY KCG + A VFE M +R V+SW +I G + G
Sbjct: 294 YAREAGLLDGSVHVVNAVIDMYCKCGDVGSAREVFERMRQRTVVSWNTMISGFSLNGQGV 353
Query: 234 DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293
+ + LF M +G P+ +TF GVL C H G + G++ F+ + EY +E ++HYGCM
Sbjct: 354 EGIDLFREMMRSGENPDAVTFLGVLGCCAHAGAANVGQEIFQSMQSEYGIEAGVEHYGCM 413
Query: 294 VDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353
VD+ G++G LEEA+ +I+ M + PN IWG+ L+AC+ H +AE +K+ + + +P N
Sbjct: 414 VDVLGRSGLLEEAHALIQGMPMRPNAAIWGALLSACRAHAGLSIAEVALKELIDL-EPFN 472
Query: 354 DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLSV 400
G + L+ +LY +WE A VRKLM + +KA G S I S+
Sbjct: 473 SGN-YVLLANLYAETGRWEEAGDVRKLMRRMSAKKAPGQSSIEEPSL 518
>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
Length = 693
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 126/317 (39%), Positives = 191/317 (60%), Gaps = 5/317 (1%)
Query: 79 RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM 138
RN +I Y+K G + +AR F+ M R+V +WSAMI+ Y A L LF EM
Sbjct: 253 RNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEM 312
Query: 139 ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198
E + P+ +T+ +VLS C+ LG+ L GK H +I + L + T LVD YAKC
Sbjct: 313 QLAE-VEPNDVTMVSVLSACAVLGA--LETGKWVHSYIRRKRLSLTIILGTALVDFYAKC 369
Query: 199 GFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL 258
G + A+ FE M +N +WTALI G A G +AL LF M+ ++P ++TF GVL
Sbjct: 370 GCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVL 429
Query: 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPN 318
AC H+ LV+EGR++F + ++Y ++PR +HYGC+VDL G+AG ++EAY+ IRTM +EPN
Sbjct: 430 MACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPN 489
Query: 319 VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVR 378
+IW + L++C HK ++ E +KQ + + P + G + L+ ++Y +W+ A +R
Sbjct: 490 AVIWRALLSSCAVHKNVEIGEEALKQIVSL-NPSHSGD-YILLSNIYASVGQWKNAAMIR 547
Query: 379 KLMLNQNVRKARGSSVI 395
K M ++ + K G S+I
Sbjct: 548 KEMKDRGIEKTPGCSLI 564
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 156/328 (47%), Gaps = 38/328 (11%)
Query: 1 MQLFSQM-HRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+ LF +M SV D ++ LKSC+ L V + ++ +K G ++ +V +SL+H
Sbjct: 103 LHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYAVKRGLMADRFVLSSLIH 162
Query: 60 EYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y A+ LFD + E V W+A+
Sbjct: 163 MYASCRDVAAAQLLFDAVEENGVVM-------------------------------WNAI 191
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I AY+ G + +++F+ M+ G+ D++T+ +V++ C +G L GK ++ +
Sbjct: 192 ITAYMKNGNWMEVVEMFKGML-EVGVAFDEITLVSVVTACGRIGDAKL--GKWVAEYVDE 248
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
N + T L+DMYAKCG L A +F+ M+ R+V++W+A+I G +AL+L
Sbjct: 249 KGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALAL 308
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F MQ V+PN++T VL+AC G ++ G+ I + L I +VD +
Sbjct: 309 FSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKR-LSLTIILGTALVDFYA 367
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
K G +++A E +M ++ N W + +
Sbjct: 368 KCGCIDDAVEAFESMPVK-NSWTWTALI 394
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 112/229 (48%), Gaps = 5/229 (2%)
Query: 106 RMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVG 165
R PL + ++ ++ A L+AG + L LF EM+ + PDQ T+ L CS + +
Sbjct: 78 RPPL-STPCYNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCT-- 134
Query: 166 LLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICG 225
L +G+ + VK + + + L+ MYA C + A ++F+ +EE V+ W A+I
Sbjct: 135 LDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITA 194
Query: 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP 285
G + + +F+ M GV +E+T V+TAC G G+ + +DE+ +
Sbjct: 195 YMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRN 254
Query: 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
R ++D++ K G L +A + M+ +V+ W + ++ + Q
Sbjct: 255 R-NLMTALIDMYAKCGELGKARRLFDGMQSR-DVVAWSAMISGYTQADQ 301
>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
Length = 558
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 147/392 (37%), Positives = 212/392 (54%), Gaps = 39/392 (9%)
Query: 6 QMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS 65
+M V D F+ +LK+C L LHS + KLGF S VYV L+H Y
Sbjct: 77 KMTMAGVSPDHFTFPFVLKACA---RLQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCG 133
Query: 66 F-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLN 124
F FA K F+E+PER+ V+W++MI ++K+G EA F+RM L
Sbjct: 134 FLDFALKAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGT------------ 181
Query: 125 AGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN 184
+ PD++ + +V+S S LG L +GK GFI +N E
Sbjct: 182 -------------------VKPDEVIVLSVVSAISILGD--LELGKWIRGFISRNGLEFT 220
Query: 185 EQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQA 244
+ T LVDM+++CG ++ ++ VF+ M ERNV++WTALI G A G S +AL +F M+
Sbjct: 221 VSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRN 280
Query: 245 TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLE 304
G +P+ +TFTGVL AC H GLV EG F+ I EY +EP +HYGCMVDL G+AG L
Sbjct: 281 HGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLN 340
Query: 305 EAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDL 364
EA + + M + PN IIW + L AC H ++AE+V K+ + + +DG + L+ ++
Sbjct: 341 EACKFVDGMPIRPNSIIWRTLLGACVNHNYIELAEKV-KEKINELDSYHDGD-YVLLSNV 398
Query: 365 YTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
Y +W VR M + + K G S+I+
Sbjct: 399 YGGVGRWAEKAGVRNSMREKRISKKPGCSLIN 430
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 137/314 (43%), Gaps = 44/314 (14%)
Query: 35 IHHLHSHILKLGFISHVYVATSLLHEYVVT---SFGFARKLFDELPERNAVTWNTMIKGY 91
I+ LH+ +LK G +H LL + S +AR +FD + + +NT+I+ +
Sbjct: 4 IYKLHARLLKTGHHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFNTIIRAH 63
Query: 92 SKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTI 151
A + ++ G++PD T
Sbjct: 64 ---------------------------------ADSSPSFSLSLFSKMTMAGVSPDHFTF 90
Query: 152 GAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELM 211
VL C+ L + G H + K ++ + + L+ Y CGFL +AL FE M
Sbjct: 91 PFVLKACARLQT-----GLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKAFEEM 145
Query: 212 EERNVISWTALICGSAHRGYSEDALSLFEMMQATG-VKPNEMTFTGVLTACVHTGLVDEG 270
ER+++SW+++I A G+ +AL+LF+ MQ G VKP+E+ V++A G ++ G
Sbjct: 146 PERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELG 205
Query: 271 RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330
K+ + LE + +VD+F + G +EE+ V M E NV+ W + +
Sbjct: 206 -KWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMG-ERNVLTWTALINGLA 263
Query: 331 EHKQFDMAERVIKQ 344
H + A R+ +
Sbjct: 264 VHGRSAEALRMFYE 277
>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
Length = 705
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/394 (34%), Positives = 220/394 (55%), Gaps = 35/394 (8%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+LF +M ++V + ++L ++ SC + + LH++IL+ GF + +AT+L
Sbjct: 218 RLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATAL---- 273
Query: 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+ Y K G + AR F+ M ++V +W+AMI+A
Sbjct: 274 --------------------------VDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISA 307
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y A D +LF +M N G+ P+++T+ ++LS C+ G+ L MGK H +I K
Sbjct: 308 YAQANCIDYAFQLFVQMRDN-GVRPNELTMVSLLSLCAVNGA--LDMGKWFHAYIDKQGV 364
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
E++ + T L+DMYAKCG + A +F +R++ +W ++ G GY E AL LF
Sbjct: 365 EVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTE 424
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M+ GVKPN++TF G L AC H GLV EG+ F+ + ++ L P+++HYGCMVDL G+AG
Sbjct: 425 METLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAG 484
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L+EAY++I +M + PN+ IWG+ LAACK HK +M E ++ L + +P+N G L+
Sbjct: 485 LLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSNMGELAARELLAL-EPQN-CGYKVLM 542
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y +W +RK + + ++K G S I
Sbjct: 543 SNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSI 576
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 104/355 (29%), Positives = 189/355 (53%), Gaps = 16/355 (4%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ ++ M + + DSF I +LK+C+ + + +H +K G +S V+V +L+
Sbjct: 94 LNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQM 153
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y S AR LFD++ ER+ V+W+TMI+ Y F R++ SW+AMI
Sbjct: 154 YSECGSLVSARLLFDKMSERDVVSWSTMIRAYIT---------LFYGFSQRSIVSWTAMI 204
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A Y+ + G +LF MI E + P+ +T+ +++ C +G+V L GK H +I++N
Sbjct: 205 AGYIRCNDLEEGERLFVRMIE-ENVFPNDITMLSLIISCGFVGAVQL--GKRLHAYILRN 261
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ ++ +AT LVDMY KCG ++ A +F+ M+ ++V++WTA+I A + A LF
Sbjct: 262 GFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLF 321
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M+ GV+PNE+T +L+ C G +D G+ + ID++ +E + ++D++ K
Sbjct: 322 VQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQ-GVEVDVILKTALIDMYAK 380
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-VKPEN 353
G + A + + ++ ++ W +A H + A ++ + + VKP +
Sbjct: 381 CGDISGAQRLF-SEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPND 434
>gi|297828249|ref|XP_002882007.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
lyrata]
gi|297327846|gb|EFH58266.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
lyrata]
Length = 606
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 119/327 (36%), Positives = 199/327 (60%), Gaps = 4/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A+ LFD +P R+ VT TMI GY+K G V +A+ F++MPLR+V ++++M+A Y+ +
Sbjct: 264 AKGLFDVMPRRDVVTCATMIDGYAKLGFVHQAKTLFDQMPLRDVVAYNSMMAGYVQNKCH 323
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L++F +M L+PD+ T+ +LS + LG L H +IV+ ++ L ++
Sbjct: 324 MEALEIFNDMEKESHLSPDETTLVIILSAIAQLGR--LSKATDMHLYIVEKQFYLGGKLG 381
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+DMY+KCG +++A++VFE +E +++ W A+I G A G E A ++ ++ +
Sbjct: 382 VALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAVHGLGESAFNMLLQIERLSII 441
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+++TF GVL AC H+GLV EG F+++ ++ +EPR+QHYGCMVD+ ++G +E A
Sbjct: 442 PDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKN 501
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+I M +EPN +IW +FL AC HK+F+ E V K + ++ + + L+ ++Y
Sbjct: 502 LIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLI--LQAGYNPSSYVLLSNMYASF 559
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
W+ RVR +M + + K G S I
Sbjct: 560 GMWKDVRRVRTMMKERKIEKIPGCSWI 586
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 174/358 (48%), Gaps = 20/358 (5%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF M V D FS+ +LK+C+ + +H + K G S +++ L+ Y+
Sbjct: 101 LFCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIHGFLRKTGLWSDLFLQNCLIGLYL 160
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP--LRNVASWSAMI 119
GFAR++FD +P+R++V++N+MI GY K G + AR+ F+ MP ++N+ SW++MI
Sbjct: 161 KCGCLGFARQMFDRMPQRDSVSYNSMINGYVKCGLIESARELFDLMPREMKNLISWNSMI 220
Query: 120 AAYLNAG-AYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
+ Y + KLF EM + ++ + M G V G + A G
Sbjct: 221 SGYAQTSEGVNIASKLFAEMPEKDLISWNSMIDGYVKHG----------RIEDAKGLFDV 270
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
AT ++D YAK GF+ A +F+ M R+V+++ +++ G +AL +
Sbjct: 271 MPRRDVVTCAT-MIDGYAKLGFVHQAKTLFDQMPLRDVVAYNSMMAGYVQNKCHMEALEI 329
Query: 239 F-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDL 296
F +M + + + P+E T +L+A G + + + ++++++ L ++ ++D+
Sbjct: 330 FNDMEKESHLSPDETTLVIILSAIAQLGRLSKATDMHLYIVEKQFYLGGKLG--VALIDM 387
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
+ K G ++ A V + ++ W + + H + A ++ Q R+ +D
Sbjct: 388 YSKCGSIQHAMLVFEGIE-NKSIDHWNAMIGGLAVHGLGESAFNMLLQIERLSIIPDD 444
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 92/224 (41%), Gaps = 37/224 (16%)
Query: 195 YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTF 254
+A+C F +Y + F E + W A+I +H AL LF +M GV ++ +
Sbjct: 58 FARCVFHEYHVCSFSPGEMEDPFLWNAVIKSHSHGKDPRQALLLFCLMLENGVSVDKFSL 117
Query: 255 TGVLTACVHTGLVDEG-------RK----------------YFK-----MIDEEYDLEPR 286
+ VL AC G V G RK Y K + +D P+
Sbjct: 118 SLVLKACSRLGFVKGGMQIHGFLRKTGLWSDLFLQNCLIGLYLKCGCLGFARQMFDRMPQ 177
Query: 287 IQ--HYGCMVDLFGKAGFLEEAYEVIRTMRLE-PNVIIWGSFLAACKEHKQ-FDMAERVI 342
Y M++ + K G +E A E+ M E N+I W S ++ + + ++A ++
Sbjct: 178 RDSVSYNSMINGYVKCGLIESARELFDLMPREMKNLISWNSMISGYAQTSEGVNIASKLF 237
Query: 343 KQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386
+ PE D + + D Y + + E A+ + +M ++V
Sbjct: 238 AEM-----PEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDV 276
>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 580
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 129/402 (32%), Positives = 225/402 (55%), Gaps = 12/402 (2%)
Query: 1 MQLFSQMHRQ--SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL 58
+ +F M +Q +V D F+++ ++ SC ++ +H + +G S++ + +L+
Sbjct: 131 LNVFKTMLKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIGNALI 190
Query: 59 HEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
Y + +F +PER+ V+W +M+ Y+++ + +A F +M +N SW+A
Sbjct: 191 DAYGKCGEPDISFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTA 250
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
+IA + G D L LF +M EG+ P T +VLS C+ L + GK HG I+
Sbjct: 251 LIAGFAQNGRGDEALHLFEQM-REEGIPPSAFTFASVLSACADLALIA--RGKEIHGHII 307
Query: 178 KN---EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
++ ++ N I L+DMY KCG ++ A +F+ M E++++SW +LI G A G+ E+
Sbjct: 308 RSTCIDYFCNIFILNALIDMYCKCGQMRSATTLFKGMHEKDIVSWNSLITGFAQNGHGEE 367
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
+L++FE M ++PN +TF G+L+AC HTGLV EG + ++++Y + PR HY M+
Sbjct: 368 SLAVFERMIEADIRPNHVTFLGLLSACCHTGLVSEGLRILDSMEKDYGVCPRSDHYAIMI 427
Query: 295 DLFGKAGFLEEAYEVI-RTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353
DL G+ LEEA +I R + +V +WG+ L AC+ H D+A R + L ++P N
Sbjct: 428 DLLGRNNRLEEAMGLIKRAPKGSDHVGMWGALLGACRIHGNMDLARRA-AEVLFQLEPGN 486
Query: 354 DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++ ++Y +W+ A +VR+LM+ + +RK S I
Sbjct: 487 -AARYVMVYNIYAAASRWDEARQVRRLMMERGLRKEAACSWI 527
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 169/365 (46%), Gaps = 42/365 (11%)
Query: 22 ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFDELPERN 80
++ C +L + LHSH +K I ++A L+ Y S A K+F LP +N
Sbjct: 20 LISKCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQSAHKVFHVLPVKN 79
Query: 81 AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMIS 140
+WN +I YS+SG EA + ++MP N+ S++++I+ + G L +F+ M+
Sbjct: 80 THSWNIIISAYSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHHGFRKESLNVFKTMLK 139
Query: 141 N-EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG 199
+ D+ T+ +++ C+ LG+ LL + HG + N I L+D Y KCG
Sbjct: 140 QCSNVLFDEFTLVSLVGSCASLGAPELL--RQVHGAAIIIGLNSNIIIGNALIDAYGKCG 197
Query: 200 -------------------------------FLKYALMVFELMEERNVISWTALICGSAH 228
L+ A +F M+E+N +SWTALI G A
Sbjct: 198 EPDISFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQ 257
Query: 229 RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE--YDLEPR 286
G ++AL LFE M+ G+ P+ TF VL+AC L+ G++ I D
Sbjct: 258 NGRGDEALHLFEQMREEGIPPSAFTFASVLSACADLALIARGKEIHGHIIRSTCIDYFCN 317
Query: 287 IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA--ACKEHKQFDMA--ERVI 342
I ++D++ K G + A + + M E +++ W S + A H + +A ER+I
Sbjct: 318 IFILNALIDMYCKCGQMRSATTLFKGMH-EKDIVSWNSLITGFAQNGHGEESLAVFERMI 376
Query: 343 KQALR 347
+ +R
Sbjct: 377 EADIR 381
>gi|225451344|ref|XP_002274803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18970
[Vitis vinifera]
gi|298204853|emb|CBI34160.3| unnamed protein product [Vitis vinifera]
Length = 471
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 152/404 (37%), Positives = 216/404 (53%), Gaps = 48/404 (11%)
Query: 9 RQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS-FG 67
R+++ D F+ + L +C +L +H+ ILK G S+V V T+ +H Y +
Sbjct: 99 REALVFDDFTYIFALGACARSPSLWEGRQIHARILKQGVWSNVLVQTTAIHFYANNNDVA 158
Query: 68 FARKLFDELPERNAVTWNTMIKGY-SKSGNV-CEARDFFERMPLRNVASWSAMIAAYLNA 125
AR +FDE+ +R++VTWN MI GY S+ G V C ARD
Sbjct: 159 LARLVFDEMRKRSSVTWNAMITGYCSQRGKVVCYARD----------------------- 195
Query: 126 GAYDPGLKLFREMISNE-GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN 184
L LFR M+ + G+ P T+ VLS S LG L G HG+I K
Sbjct: 196 -----ALVLFRAMLVDACGVKPTDTTMVCVLSAASQLGV--LETGVGVHGYIEKTVLAPA 248
Query: 185 EQI--ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
+ T LVDMY+KCG L AL +F M+ERNV++WTA+I G A G ++AL L + M
Sbjct: 249 NDVFVGTGLVDMYSKCGCLGSALCIFWGMKERNVLTWTAMITGLARHGRGKEALELLDEM 308
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
A GVKPN +TFT + +AC H GLV+EG + F + ++ + P IQHYGC+VDL G+AG
Sbjct: 309 VAYGVKPNAVTFTSLFSACCHAGLVEEGLQLFHSMRSKFGVTPGIQHYGCIVDLLGRAGH 368
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALR---------MVKPEN 353
L+EAY+ +R M +EP+ I+W S L+ACK H+ M E V K L+ +V
Sbjct: 369 LKEAYDFVRGMPVEPDAILWRSLLSACKVHRDVVMGEEVGKLLLQLQPQQSFADLVAASE 428
Query: 354 DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
D F + ++Y E+WE E VR+ M + + G S + +
Sbjct: 429 D---FIALSNVYASAERWEDVETVREAMKVKGIETKPGCSSVQT 469
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 89/356 (25%), Positives = 144/356 (40%), Gaps = 51/356 (14%)
Query: 5 SQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT 64
S +H +S+ +F L K N++ I LH+H++ S +A + H +
Sbjct: 2 SNLHMRSLSRLAFDTLLHFKP----NSIHHIKQLHAHLITNAVSSPPLLAKLIHHYCAFS 57
Query: 65 SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLN 124
S +A F L N +NT+IK S ++
Sbjct: 58 SPHYAYTFFIHLRSPNLFLFNTLIKCLPPSSSIL-------------------------- 91
Query: 125 AGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN 184
+F + +S E L D T L C+ S L G+ H I+K N
Sbjct: 92 ---------VFADWVSREALVFDDFTYIFALGACAR--SPSLWEGRQIHARILKQGVWSN 140
Query: 185 EQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICG-SAHRG----YSEDALSLF 239
+ T + YA + A +VF+ M +R+ ++W A+I G + RG Y+ DAL LF
Sbjct: 141 VLVQTTAIHFYANNNDVALARLVFDEMRKRSSVTWNAMITGYCSQRGKVVCYARDALVLF 200
Query: 240 EMM--QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC-MVDL 296
M A GVKP + T VL+A G+++ G I++ G +VD+
Sbjct: 201 RAMLVDACGVKPTDTTMVCVLSAASQLGVLETGVGVHGYIEKTVLAPANDVFVGTGLVDM 260
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-VKP 351
+ K G L A + M+ E NV+ W + + H + A ++ + + VKP
Sbjct: 261 YSKCGCLGSALCIFWGMK-ERNVLTWTAMITGLARHGRGKEALELLDEMVAYGVKP 315
>gi|297828245|ref|XP_002882005.1| hypothetical protein ARALYDRAFT_903974 [Arabidopsis lyrata subsp.
lyrata]
gi|297327844|gb|EFH58264.1| hypothetical protein ARALYDRAFT_903974 [Arabidopsis lyrata subsp.
lyrata]
Length = 408
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 119/327 (36%), Positives = 199/327 (60%), Gaps = 4/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A+ LFD +P R+ VT TMI GY+K G V +A+ F++MPLR+V ++++M+A Y+ +
Sbjct: 66 AKGLFDVMPRRDVVTCATMIDGYAKLGFVHQAKTLFDQMPLRDVVAYNSMMAGYVQNKCH 125
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L++F +M L+PD+ T+ +LS + LG L H +IV+ ++ L ++
Sbjct: 126 MEALEIFNDMEKESHLSPDETTLVIILSAIAQLGR--LSKATDMHLYIVEKQFYLGGKLG 183
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+DMY+KCG +++A++VFE +E +++ W A+I G A G E A ++ ++ +
Sbjct: 184 VALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAVHGLGESAFNMLLQIERLSII 243
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+++TF GVL AC H+GLV EG F+++ ++ +EPR+QHYGCMVD+ ++G +E A
Sbjct: 244 PDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKN 303
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+I M +EPN +IW +FL AC HK+F+ E V K + ++ + + L+ ++Y
Sbjct: 304 LIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLI--LQAGYNPSSYVLLSNMYASF 361
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
W+ RVR +M + + K G S I
Sbjct: 362 GMWKDVRRVRTMMKERKIEKIPGCSWI 388
>gi|15228028|ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g42920, chloroplastic; Flags: Precursor
gi|4512663|gb|AAD21717.1| hypothetical protein [Arabidopsis thaliana]
gi|20197867|gb|AAM15291.1| hypothetical protein [Arabidopsis thaliana]
gi|110738441|dbj|BAF01146.1| hypothetical protein [Arabidopsis thaliana]
gi|330255093|gb|AEC10187.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 126/361 (34%), Positives = 214/361 (59%), Gaps = 6/361 (1%)
Query: 36 HHLHSHILKLGFISHVYVATSLLHEYVVTSFGF-ARKLFDELPERNAVTWNTMIKGYSKS 94
LH ++K G ++ ++LH YV A ++F + + V WN+MI G++K
Sbjct: 146 RQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKC 205
Query: 95 GNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAV 154
G + +A++ F+ MP RN SW++MI+ ++ G + L +FREM + + PD T+ ++
Sbjct: 206 GLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREM-QEKDVKPDGFTMVSL 264
Query: 155 LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER 214
L+ C++LG+ G+ H +IV+N +ELN + T L+DMY KCG ++ L VFE ++
Sbjct: 265 LNACAYLGASE--QGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKK 322
Query: 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF 274
+ W ++I G A+ G+ E A+ LF ++ +G++P+ ++F GVLTAC H+G V ++F
Sbjct: 323 QLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFF 382
Query: 275 KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
+++ E+Y +EP I+HY MV++ G AG LEEA +I+ M +E + +IW S L+AC++
Sbjct: 383 RLMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGN 442
Query: 335 FDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSV 394
+MA+R K L+ + P+ G + L+ + Y +E A R LM + + K G S
Sbjct: 443 VEMAKRAAK-CLKKLDPDETCG-YVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSS 500
Query: 395 I 395
I
Sbjct: 501 I 501
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 73/318 (22%), Positives = 131/318 (41%), Gaps = 70/318 (22%)
Query: 27 THFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT--SFGFARKLFDELPERNAVTW 84
T + + + +H+ ++K G IS A+ +L + +A +F + +N W
Sbjct: 33 TQCSTMRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFVW 92
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI-SNEG 143
NT+I+G+S+S F M + +F +M+ S+
Sbjct: 93 NTIIRGFSRSS--------FPEM-----------------------AISIFIDMLCSSPS 121
Query: 144 LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY-------- 195
+ P ++T +V LG G+ HG ++K E + I ++ MY
Sbjct: 122 VKPQRLTYPSVFKAYGRLGQA--RDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIE 179
Query: 196 -----------------------AKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
AKCG + A +F+ M +RN +SW ++I G G
Sbjct: 180 AWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRF 239
Query: 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK-MIDEEYDLEPRIQHYG 291
+DAL +F MQ VKP+ T +L AC + G ++GR + ++ ++L +
Sbjct: 240 KDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIV--VT 297
Query: 292 CMVDLFGKAGFLEEAYEV 309
++D++ K G +EE V
Sbjct: 298 ALIDMYCKCGCIEEGLNV 315
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 103/240 (42%), Gaps = 41/240 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F +M + V D F+++ +L +C + +HE
Sbjct: 243 LDMFREMQEKDVKPDGFTMVSLLNACAYLG--------------------ASEQGRWIHE 282
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
Y+V R F E N++ +I Y K G + E + FE P + ++ W++MI
Sbjct: 283 YIV------RNRF----ELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMIL 332
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF--IVK 178
N G + + LF E+ GL PD ++ VL+ C+H G V A F ++K
Sbjct: 333 GLANNGFEERAMDLFSEL-ERSGLEPDSVSFIGVLTACAHSGEV-----HRADEFFRLMK 386
Query: 179 NEWELNEQIA--TILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSEDA 235
++ + I T++V++ G L+ A + + M E + + W++L+ G E A
Sbjct: 387 EKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNVEMA 446
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 117/270 (43%), Gaps = 16/270 (5%)
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMG-----KSAHGFIVKNEWELNEQIAT-IL 191
++S G+T M LSG ++L + K H ++K + A+ +L
Sbjct: 5 ILSFSGVTVPAMPSSGSLSGNTYLRLIDTQCSTMRELKQIHASLIKTGLISDTVTASRVL 64
Query: 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM--QATGVKP 249
A + YA +VF + +N W +I G + + E A+S+F M + VKP
Sbjct: 65 AFCCASPSDMNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKP 124
Query: 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEV 309
+T+ V A G +GR+ M+ +E LE M+ ++ G L EA+ +
Sbjct: 125 QRLTYPSVFKAYGRLGQARDGRQLHGMVIKE-GLEDDSFIRNTMLHMYVTCGCLIEAWRI 183
Query: 310 IRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNE 369
M + +V+ W S + + D A+ + + P+ +G + + + N
Sbjct: 184 FLGM-IGFDVVAWNSMIMGFAKCGLIDQAQNLFDEM-----PQRNGVSWNSMISGFVRNG 237
Query: 370 KWEGAERVRKLMLNQNVRKARGSSVISSLS 399
+++ A + + M ++V K G +++S L+
Sbjct: 238 RFKDALDMFREMQEKDV-KPDGFTMVSLLN 266
>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
Length = 752
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 124/354 (35%), Positives = 199/354 (56%), Gaps = 33/354 (9%)
Query: 71 KLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDP 130
+ F+++P N V+W TM+ G+++ G + EAR F++MP+RNV +W+AMIAAY+ D
Sbjct: 110 EFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDE 169
Query: 131 GLKLFREMISNEGLT-----------------------------PDQMTIGAVLSGCSHL 161
+ LF EM ++ PDQ T LS C+HL
Sbjct: 170 AISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNKPDQSTFACGLSSCAHL 229
Query: 162 GSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTA 221
+ L +GK H ++K+ + + ++ L+ MYAKCG + A ++F+ ++ +V+SW +
Sbjct: 230 AA--LQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNS 287
Query: 222 LICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY 281
LI A G +AL LF M+ GV P+E+TF G+L+AC H GL+D+G K FK + + Y
Sbjct: 288 LIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAY 347
Query: 282 DLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERV 341
++EP +HY CMVDL G+AG LEEA++++R M++ N IWG+ L AC+ H ++A+
Sbjct: 348 NIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFA 407
Query: 342 IKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++ L +P + L+ ++ +W+ RVR+LM + K G S I
Sbjct: 408 AEKLLEF-EPHKTSN-YVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWI 459
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 129/264 (48%), Gaps = 16/264 (6%)
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
F AR+LFD +P ++ V+WN+M+ GY+++G + FFE M R+V SW+ M+ ++
Sbjct: 43 FDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEV 102
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
G + + F E I N P+ ++ +L G + G + + ++N N
Sbjct: 103 GDLNSSWEFF-EKIPN----PNTVSWVTMLCGFARFGKIAEAR-RLFDQMPIRNVVAWNA 156
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
IA Y + + A+ +F M E+N ISWT +I G G ++A L M
Sbjct: 157 MIAA-----YVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYR 211
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE-YDLEPRIQHYGCMVDLFGKAGFLE 304
KP++ TF L++C H + G++ +++ + Y + + + ++ ++ K G +
Sbjct: 212 N-KPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSN--ALITMYAKCGSIS 268
Query: 305 EAYEVIRTMRLEPNVIIWGSFLAA 328
A + + + +V+ W S +AA
Sbjct: 269 SAELLFKDID-HFDVVSWNSLIAA 291
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 78/150 (52%), Gaps = 6/150 (4%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
QL +QM ++ P D + L SC H L V LH ++K G+ + ++V+ +L+ Y
Sbjct: 203 QLLNQMPYRNKP-DQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMY 261
Query: 62 V-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA----SWS 116
S A LF ++ + V+WN++I Y+ +GN EA F +M + VA ++
Sbjct: 262 AKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFV 321
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
+++A + G D GLKLF+ M+ + P
Sbjct: 322 GILSACSHVGLIDQGLKLFKCMVQAYNIEP 351
>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
Length = 658
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 138/424 (32%), Positives = 225/424 (53%), Gaps = 48/424 (11%)
Query: 12 VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSF-GFAR 70
+ D ++ +LK+C L +H KLGF +V+VA SL+H Y F G AR
Sbjct: 114 IRPDFYTFPPVLKAC---GTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIAR 170
Query: 71 KLFDELPERNAVTWNTMIKGYSKSGNVCEARD---------------------------- 102
LFD++P R+ +WN MI G ++GN +A D
Sbjct: 171 SLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMY 230
Query: 103 -----------FFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTI 151
FE +P+++V SW+ +I Y G +++++ M + + P+Q T
Sbjct: 231 AKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTW 290
Query: 152 GAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELM 211
++L +H+G+ L G HG ++K L+ +AT L+D+Y KCG L A+ +F +
Sbjct: 291 VSILPAYAHVGA--LQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQV 348
Query: 212 EERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR 271
+ + ++W A+I G++E L LF M GVKP+ +TF +L+AC H+G V+EG+
Sbjct: 349 PQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGK 408
Query: 272 KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKE 331
F+++ +EY ++P ++HYGCMVDL G+AG+LE AY+ I+ M L+P+ IWG+ L AC+
Sbjct: 409 WCFRLM-QEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRI 467
Query: 332 HKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARG 391
H ++ + L V +N G + L+ ++Y KWEG ++VR L + ++K G
Sbjct: 468 HGNIELG-KFASDRLFEVDSKN-VGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPG 525
Query: 392 SSVI 395
S I
Sbjct: 526 WSTI 529
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 138/291 (47%), Gaps = 27/291 (9%)
Query: 87 MIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
++ Y+ G+V +R F+++P ++V +W++MI+AY++ G + + F +++ + P
Sbjct: 57 LVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRP 116
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
D T VL C L+ G+ H + K ++ N +A L+ MY++ GF A
Sbjct: 117 DFYTFPPVLKACG-----TLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARS 171
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT-- 264
+F+ M R++ SW A+I G G + AL + + M+ G+K N +T +L V
Sbjct: 172 LFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMYA 231
Query: 265 --GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM----RLEPN 318
GL+D K F++I + + + ++ + + G EA EV + M + PN
Sbjct: 232 KLGLLDSAHKVFEIIPVK-----DVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPN 286
Query: 319 VIIWGSFLAACKE----HKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365
W S L A + + RVIK L + D V T + D+Y
Sbjct: 287 QGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHL-----DVFVATCLIDVY 332
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 89/360 (24%), Positives = 165/360 (45%), Gaps = 53/360 (14%)
Query: 38 LHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGN 96
LH+ ++ G + ++++T L++ Y + +R FD++P+++ WN+MI Y +G+
Sbjct: 38 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGH 97
Query: 97 VCEA--------------RDFFERMPL----------RNVASW-------------SAMI 119
EA DF+ P+ R + W +++I
Sbjct: 98 FHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLI 157
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y G LF +M + + + M G + +G + ++ +L G +K
Sbjct: 158 HMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNG-NAAQALDVLDEMRLEG--IKM 214
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ I + VDMYAK G L A VFE++ ++VISW LI G A G + +A+ ++
Sbjct: 215 NFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVY 274
Query: 240 EMM-QATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLF 297
+MM + + PN+ T+ +L A H G + +G K + ++I L+ + C++D++
Sbjct: 275 KMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVA--TCLIDVY 332
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM----VKPEN 353
GK G L +A + + E +V W + ++ H AE+ +K M VKP++
Sbjct: 333 GKCGRLVDAMSLFYQVPQESSV-TWNAIISC---HGIHGHAEKTLKLFGEMLDEGVKPDH 388
>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
Length = 665
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 134/369 (36%), Positives = 216/369 (58%), Gaps = 10/369 (2%)
Query: 32 LTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKG 90
++V LH + +K G + V T+L+ Y ++FDE + + N +I G
Sbjct: 173 VSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAG 232
Query: 91 YSKSGNVCEA----RDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
S++ VCEA ++F +R NV SW++++A + G ++ FREM + +G P
Sbjct: 233 LSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQA-QGTEP 291
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
+ +TI VL +++ + L+ G+SAH F ++ + + +++ LVDMYAKCG +K A +
Sbjct: 292 NSVTIPCVLPAFANVAA--LMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARI 349
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
+F+ M RNV+SW A+I G A G + +A+ +F M KP+ +TFT +L AC GL
Sbjct: 350 IFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGL 409
Query: 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
+EGR YFK + EY + PR++HY CMV L G+AG L+EAY++I M EP+ IWGS L
Sbjct: 410 TEEGRHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLL 469
Query: 327 AACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386
+C+ H D+AE V + L ++PEN G + L+ ++Y + W+ RVR++M + +
Sbjct: 470 GSCRVHGNVDLAE-VAAEKLFHLEPENAGN-YVLLSNIYASKKMWDRVNRVREMMKDVGL 527
Query: 387 RKARGSSVI 395
+K +G S I
Sbjct: 528 KKEKGCSWI 536
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 135/302 (44%), Gaps = 16/302 (5%)
Query: 11 SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFA 69
S P D + KSC L + LH+ G +VA+SLLH Y+ + + G A
Sbjct: 15 SFPPDPHLLPTAFKSCP---TLPLARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNA 71
Query: 70 RKLFDEL--PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR-----NVASWSAMIAAY 122
R LFD + P+R V W+ ++ ++ G+ A E M NV +W+ +++
Sbjct: 72 RALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGL 131
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL-MGKSAHGFIVKNEW 181
+G + M L PD + LS +G VGL+ +G+ HG+ VK
Sbjct: 132 NRSGRARDAVVALATMHGEGLLRPDATGVSCALSA---VGDVGLVSVGQQLHGYAVKAGC 188
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ + T L+DMY KCG + VF+ +V S ALI G + +AL LF+
Sbjct: 189 RADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKE 248
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
GV+ N +++T ++ CV G E ++F+ + + EP C++ F
Sbjct: 249 FVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQ-GTEPNSVTIPCVLPAFANVA 307
Query: 302 FL 303
L
Sbjct: 308 AL 309
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 11/154 (7%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHH---LHSHILKLGFISHVYVATSL 57
++ F +M Q +S +I +L + F N+ + H H L+ GF+ VYV+++L
Sbjct: 278 VEFFREMQAQGTEPNSVTIPCVLPA---FANVAALMHGRSAHCFALRKGFLHDVYVSSAL 334
Query: 58 LHEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERM----PLRNV 112
+ Y AR +FD + RN V+WN MI GY+ G A F M ++
Sbjct: 335 VDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDM 394
Query: 113 ASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
+++ ++AA AG + G F+EM + G++P
Sbjct: 395 VTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSP 428
>gi|345505226|gb|AEN99837.1| chlororespiratory reduction 4, partial [Lobularia maritima]
Length = 570
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 195/327 (59%), Gaps = 3/327 (0%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A+ LFD +P R+ VTW TMI GY+K G V +A+ F+ MP R+V ++++M+ Y+ +
Sbjct: 235 AKGLFDVMPRRDVVTWATMIDGYAKLGFVHKAKSLFDVMPHRDVVAYNSMMGGYVQNKYH 294
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L++F +M L+PD+ T+ VLS + LG L H +IV+ + L+ ++
Sbjct: 295 MEALEVFYDMEKESHLSPDETTLVIVLSAIAQLGR--LSKAVDIHLYIVEKRFLLDGKLG 352
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+DMY+KCG ++ A+ VFE +E +++ W A+I G A G E A + ++ +K
Sbjct: 353 VALIDMYSKCGSIQQAMAVFEGIENKSIDHWNAMIGGLAVHGLGEAAFDMLMEIEKRFIK 412
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+ +TF GVL AC H+GLV EG F+++ ++ +EPR+QHYGCMVDL ++G +E A
Sbjct: 413 PDYITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDLLARSGSIELAKH 472
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+I M +EPN +IW +FL AC HK+F+ E V+ + L + N + L+ ++Y
Sbjct: 473 LISEMPIEPNDVIWRTFLNACSHHKEFETRELVVAENLILQAGYNPSS-YVLLSNMYASF 531
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
E WE RVR +M + + K G S I
Sbjct: 532 EMWEDVRRVRTMMKERKIEKVPGCSWI 558
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/360 (25%), Positives = 175/360 (48%), Gaps = 27/360 (7%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L M +VP D FS+ + K+C+ +H + K S +++ L+ Y+
Sbjct: 72 LLCSMIENNVPVDKFSLSLVTKACSRLGFAKEGMQIHGFLTKTVICSDLFLQNCLIGLYI 131
Query: 63 VTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP--LRNVASWSAMI 119
S G+AR++FD +P+R++V++N+MI GY K G + AR+ F+ MP +N+ SW++MI
Sbjct: 132 KCSCLGYARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMPKEKKNLISWNSMI 191
Query: 120 AAYLN-AGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
Y D KLF EM + ++ + + G V G + GL +
Sbjct: 192 GGYAQREDGVDIASKLFAEMPEKDLISWNSLIDGYVKHGRIE-DAKGLFDVMPRRDVVT- 249
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
W ++D YAK GF+ A +F++M R+V+++ +++ G Y +AL +
Sbjct: 250 --W-------ATMIDGYAKLGFVHKAKSLFDVMPHRDVVAYNSMMGGYVQNKYHMEALEV 300
Query: 239 F-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDL 296
F +M + + + P+E T VL+A G + + + ++++ + L+ ++ ++D+
Sbjct: 301 FYDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIVEKRFLLDGKLG--VALIDM 358
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH----KQFDMAERVIKQALRMVKPE 352
+ K G +++A V + ++ W + + H FDM + K R +KP+
Sbjct: 359 YSKCGSIQQAMAVFEGIE-NKSIDHWNAMIGGLAVHGLGEAAFDMLMEIEK---RFIKPD 414
>gi|357153075|ref|XP_003576330.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g18840-like [Brachypodium distachyon]
Length = 535
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 141/432 (32%), Positives = 225/432 (52%), Gaps = 52/432 (12%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIH------------HLHSHILKLGFI 48
+ +F+++ R S+P + +LKSC NL LH +LKLG
Sbjct: 98 LAVFNRVSRLSLPIPLPAFPALLKSCARAFNLCAAADGGGEGFVSKGMELHGCVLKLGCG 157
Query: 49 SHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGY---------------- 91
+ YV +L+ Y + G ARK+FD +P RNAV+WN ++ +
Sbjct: 158 ADRYVQNALVSMYGKLGRLGDARKVFDGMPARNAVSWNALVAAHGDVGDSRGAERVSQEM 217
Query: 92 ---------------SKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFR 136
++ G++ A F MP R+ SW+++I +Y G LK+FR
Sbjct: 218 PERSVSWWNAEITRHARVGDMEAAARVFREMPGRDAVSWNSLIGSYAKLGQCARALKVFR 277
Query: 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA 196
EM + G+ P ++T+ +VL C+ +G L +GK HG++ + + LVDMYA
Sbjct: 278 EM-QDSGVEPTELTLVSVLGACTEIGE--LELGKGVHGYLSSKGVLADGYVGNALVDMYA 334
Query: 197 KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTG 256
KCG L+ A VFE M R++ W A+I G + GYS +AL LF +M+ V+P+ +TF G
Sbjct: 335 KCGSLELARQVFESMSTRDITCWNAMIVGLSVHGYSREALELFNVMR---VEPDHVTFLG 391
Query: 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE 316
VL C H+GLVDEGR F+ + E+Y + P ++HYGCMVD+ + G + EAY+++ M L+
Sbjct: 392 VLIVCSHSGLVDEGRVXFRSMTEDYKIVPGVKHYGCMVDMLCRCGKVAEAYQMLNYMPLK 451
Query: 317 PNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAER 376
N ++W LAAC+ H A + + L + P +DG V ++ +Y ++W+ E
Sbjct: 452 ANSVLWKMVLAACRLHGHIHHANKAFHE-LHQLMPIDDGDVI-MMSSIYAEGKRWDDVEH 509
Query: 377 VRKLMLNQNVRK 388
+R ++ + K
Sbjct: 510 LRTKVIEPSFWK 521
>gi|297828247|ref|XP_002882006.1| hypothetical protein ARALYDRAFT_903976 [Arabidopsis lyrata subsp.
lyrata]
gi|297327845|gb|EFH58265.1| hypothetical protein ARALYDRAFT_903976 [Arabidopsis lyrata subsp.
lyrata]
Length = 412
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 119/327 (36%), Positives = 199/327 (60%), Gaps = 4/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A+ LFD +P R+ VT TMI GY+K G V +A+ F++MPLR+V ++++M+A Y+ +
Sbjct: 70 AKGLFDVMPRRDVVTCATMIDGYAKLGFVHQAKTLFDQMPLRDVVAYNSMMAGYVQNKCH 129
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L++F +M L+PD+ T+ +LS + LG L H +IV+ ++ L ++
Sbjct: 130 MEALEIFNDMEKESHLSPDETTLVIILSAIAQLGR--LSKATDMHLYIVEKQFYLGGKLG 187
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+DMY+KCG +++A++VFE +E +++ W A+I G A G E A ++ ++ +
Sbjct: 188 VALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAVHGLGESAFNMLLQIERLSII 247
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+++TF GVL AC H+GLV EG F+++ ++ +EPR+QHYGCMVD+ ++G +E A
Sbjct: 248 PDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKN 307
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+I M +EPN +IW +FL AC HK+F+ E V K + ++ + + L+ ++Y
Sbjct: 308 LIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLI--LQAGYNPSSYVLLSNMYASF 365
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
W+ RVR +M + + K G S I
Sbjct: 366 GMWKDVRRVRTMMKERKIEKIPGCSWI 392
>gi|115441803|ref|NP_001045181.1| Os01g0914600 [Oryza sativa Japonica Group]
gi|20804987|dbj|BAB92663.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113534712|dbj|BAF07095.1| Os01g0914600 [Oryza sativa Japonica Group]
Length = 589
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 121/327 (37%), Positives = 199/327 (60%), Gaps = 5/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR+LFD++P+R+ V WN+MI GY++ G + EAR FE MP RNV SWS +I Y+ G
Sbjct: 232 ARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEP 291
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ L+ F+ M+ G+ PD++ ++ C+ LG+ L G+ H ++ K + + +
Sbjct: 292 NEALEFFQRMLRC-GIKPDRVAAVGAVAACAQLGA--LEQGRWLHSYLEKKKVLFDVVVQ 348
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
T L+DMY KCG L A ++FE M +++V++W +I G GY DA+ LF M+
Sbjct: 349 TALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAP 408
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
++++ VLT+C H GLV EG F ++++ LEP+++HYG ++DL G+AG +++A
Sbjct: 409 MDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARN 468
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
I TM +EP +WGS LA+C+ H+ ++AE +++ + +D GV+ L+ ++Y
Sbjct: 469 TIETMPMEPTPELWGSLLASCRSHRCVELAELSVERLASL--GADDSGVYVLLSNIYADE 526
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
W+ R+RKLM + ++K G SVI
Sbjct: 527 GMWDDVFRIRKLMSAEGMKKNIGRSVI 553
>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 623
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 138/393 (35%), Positives = 215/393 (54%), Gaps = 35/393 (8%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF QM+ + VP +S ++L ++ +C NL + LH LK GF S V V
Sbjct: 139 LFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVV-------- 190
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
N I Y K G+V A+ F+ MP++ + SW+AM++ Y
Sbjct: 191 ----------------------NCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGY 228
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
G L+L+R M N G+ PD +T+ VLS C++LG+ + G I + +
Sbjct: 229 AQNGLATNVLELYRNMDMN-GVHPDPVTLVGVLSSCANLGAQSV--GHEVEFKIQASGFT 285
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
N + L++MYA+CG L A VF+ M ER ++SWTA+I G G+ E A+ LF+ M
Sbjct: 286 SNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEM 345
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
+G++P+ F VL+AC H GL D+G +YFKM+ Y LEP +HY CMVDL G+AG
Sbjct: 346 IRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGR 405
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362
L+EA +I +M ++P+ +WG+ L ACK HK ++AE ++ + + +PEN G + L+
Sbjct: 406 LKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIEL-EPENI-GYYVLLS 463
Query: 363 DLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y+ +G R+R +M + ++K G S +
Sbjct: 464 NIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYV 496
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 88/364 (24%), Positives = 168/364 (46%), Gaps = 40/364 (10%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+ QM R ++F+ LKSC + + H I K+G + +V T L+
Sbjct: 34 LSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLISM 93
Query: 61 YVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y S ARK+F+E +S+ VC ++A++
Sbjct: 94 YCKGSLVDNARKVFEE-------------NFHSRKLTVC----------------YNALV 124
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y++ + LFR+M + EG+ + +T+ ++ C + + L +G S H +K
Sbjct: 125 SGYVSNSKCSEAVLLFRQM-NEEGVPVNSVTLLGLIPAC--VSPINLELGSSLHCSTLKY 181
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
++ + + + MY KCG + YA +F+ M + +ISW A++ G A G + + L L+
Sbjct: 182 GFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELY 241
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKY-FKMIDEEYDLEPRIQHYGCMVDLFG 298
M GV P+ +T GVL++C + G G + FK+ + P + + +++++
Sbjct: 242 RNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNN--ALINMYA 299
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-VKPENDGGV 357
+ G L +A V M E ++ W + + H ++A ++ K+ +R ++P DG
Sbjct: 300 RCGNLTKAQAVFDGMP-ERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEP--DGTA 356
Query: 358 FTLI 361
F +
Sbjct: 357 FVCV 360
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 37/226 (16%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L+ M V D +++ +L SC + +V H + I GF S+ ++ +L++
Sbjct: 238 LELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINM 297
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + A+ +FD +PER V+W +I GY G+ I
Sbjct: 298 YARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGH--------------------GEI 337
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A ++LF+EMI + G+ PD VLS CSH G G + +N
Sbjct: 338 A-----------VQLFKEMIRS-GIEPDGTAFVCVLSACSHAGLTD--QGLEYFKMMKRN 383
Query: 180 -EWELNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALI 223
+ E + + +VD+ + G LK A + E M + + W AL+
Sbjct: 384 YQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALL 429
>gi|222617104|gb|EEE53236.1| hypothetical protein OsJ_36137 [Oryza sativa Japonica Group]
Length = 542
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 119/335 (35%), Positives = 198/335 (59%), Gaps = 5/335 (1%)
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
G AR++FD + ER+ ++WNT++ GY G+ R+ F+ M +RNV SW+ MIAA
Sbjct: 184 MGAAREVFDGMAERDPISWNTLMSGYLHLGDTATVRELFDEMTVRNVNSWNTMIAACSEE 243
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
G+ +K+F M + G PD T+ ++S C+ LGS L + HG + K+ E+N
Sbjct: 244 GSLADTVKVFNRMRAT-GFEPDAATMAVLMSACAQLGS--LTIAGQVHGLLQKSCVEMNC 300
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
+ L+DMYAKCG + A +F ++ +S+ +I A G++ DAL LF M +
Sbjct: 301 HVQNSLIDMYAKCGCISQAQFLFTETYPKDTVSYNVMIIAFAQHGHARDALDLFNAMVDS 360
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305
G++P+ +TF GVL+AC H GLV+ G+ YF+++ Y ++ HY C+VDL+G+AG +EE
Sbjct: 361 GLQPDAVTFLGVLSACAHAGLVEYGKNYFELMKTTYAVQQSPDHYACVVDLYGRAGLIEE 420
Query: 306 AYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365
A+ ++TM ++P+ +WG+ L AC++H D+ E K+ +R ++P+N G + L+ +
Sbjct: 421 AHCFVKTMPVKPHAGVWGALLNACRKHCHVDVGEIAAKELIR-IEPKNPGN-YVLLRNTL 478
Query: 366 TMNEKWEGAERVRKLMLNQNVRKARGSSVISSLSV 400
++W+ E V+ M + + K G S + SV
Sbjct: 479 ARGQQWDAVEDVQLSMRRKVIDKTAGCSWVEVDSV 513
>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
Length = 802
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 135/401 (33%), Positives = 222/401 (55%), Gaps = 10/401 (2%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKL--GFISH--VYVATSL 57
+LF +M + VP D F+ +L +C + +H I++L F+ + V +L
Sbjct: 280 ELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNAL 339
Query: 58 LHEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
+ Y + AR++FD + ++ V+WNT++ GY +S + +A + FE MP +N SW
Sbjct: 340 VTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWM 399
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
M++ Y++ G + LKLF +M S E + P T ++ C LG+ L GK HG I
Sbjct: 400 VMVSGYVHGGFAEDALKLFNKMRS-ENVKPCDYTYAGAIAACGELGA--LKHGKQLHGHI 456
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
V+ +E + L+ MYA+CG +K A ++F +M + +SW A+I G+ +AL
Sbjct: 457 VQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREAL 516
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
LF+ M A G+ P+ ++F VLTAC H+GLVDEG +YF+ + ++ + P HY ++DL
Sbjct: 517 ELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDL 576
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
G+AG + EA ++I+TM EP IW + L+ C+ ++ Q +M P++D G
Sbjct: 577 LGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMT-PQHD-G 634
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
+ L+ + Y+ W A RVRKLM ++ V+K G S I +
Sbjct: 635 TYILLSNTYSAAGCWVDAARVRKLMRDRGVKKEPGCSWIEA 675
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 105/383 (27%), Positives = 184/383 (48%), Gaps = 54/383 (14%)
Query: 11 SVPSDSFSILHILKSCTHFNNLTVIH--HLHSHILKLGFISHVYVATSLLHEYV----VT 64
S+ D +S +L + H N++V H LH +LK G + V +L+ Y+
Sbjct: 152 SLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPE 211
Query: 65 SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLN 124
+ ARK+ DE+P ++ +TW TM+ GY + G+V AR FE + + W+AMI+ Y++
Sbjct: 212 ATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVH 271
Query: 125 AGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN 184
+G +LFR M+ E + D+ T +VLS C+++G GKS HG I++ +
Sbjct: 272 SGMAVEAFELFRRMVL-ERVPLDEFTFTSVLSACANVGLFA--HGKSVHGQIIRLQPNFV 328
Query: 185 EQIA----TILVDMYAKCG-------------------------------FLKYALMVFE 209
+ A LV Y+KCG L A+ VFE
Sbjct: 329 PEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFE 388
Query: 210 LMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
M +N +SW ++ G H G++EDAL LF M++ VKP + T+ G + AC G +
Sbjct: 389 EMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKH 448
Query: 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNV--IIWGSFLA 327
G++ I + E ++ ++ + G ++EA+ + M PN+ + W + ++
Sbjct: 449 GKQLHGHI-VQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVM---PNIDSVSWNAMIS 504
Query: 328 ACKEH----KQFDMAERVIKQAL 346
A +H + ++ +R++ + +
Sbjct: 505 ALGQHGHGREALELFDRMVAEGI 527
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 85/358 (23%), Positives = 148/358 (41%), Gaps = 50/358 (13%)
Query: 32 LTVIHHLHSHILKLGFI---SHVYVATSLLHEYVVT-SFGFARKLF--DELPERNAVTWN 85
L + LH+ +L + H ++ L+H Y ++ A LF D P V+
Sbjct: 37 LRALRCLHARLLTSALLHAPPHPHLTLRLIHLYTLSRDLPAAATLFCADPCP----VSAT 92
Query: 86 TMIKGYSKSGNVCEARDFFERMPL--RNVASWSAMIAAYLNAGAYDPGLKLFREMISNEG 143
+++ Y+ + + A FF+ +P R+ +A+I+AY A P + +FR ++++
Sbjct: 93 SLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGS 152
Query: 144 LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC----- 198
L PD + A+LS HL ++ + H ++K+ + LV +Y KC
Sbjct: 153 LRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPEA 212
Query: 199 -----------------------------GFLKYALMVFELMEERNVISWTALICGSAHR 229
G + A VFE ++ + + W A+I G H
Sbjct: 213 TRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHS 272
Query: 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI---DEEYDLEPR 286
G + +A LF M V +E TFT VL+AC + GL G+ I + E
Sbjct: 273 GMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAA 332
Query: 287 IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
+ +V + K G + A + M L+ +V+ W + L+ E D A V ++
Sbjct: 333 LPVNNALVTFYSKCGNIAVARRIFDNMTLK-DVVSWNTILSGYVESSCLDKAVEVFEE 389
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 106/252 (42%), Gaps = 49/252 (19%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF++M ++V ++ + +C L LH HI++LGF
Sbjct: 415 LKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGF------------- 461
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
E + N +I Y++ G V EA F MP + SW+AMI+
Sbjct: 462 -----------------EGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMIS 504
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF----I 176
A G L+LF M++ EG+ PD+++ VL+ C+H G V GF
Sbjct: 505 ALGQHGHGREALELFDRMVA-EGIYPDRISFLTVLTACNHSGLVD-------EGFRYFES 556
Query: 177 VKNEWEL--NEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSE 233
+K ++ + E T L+D+ + G + A + + M E W A++ G G E
Sbjct: 557 MKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDME 616
Query: 234 ----DALSLFEM 241
A LF+M
Sbjct: 617 LGAHAADQLFKM 628
>gi|218186152|gb|EEC68579.1| hypothetical protein OsI_36919 [Oryza sativa Indica Group]
Length = 586
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 129/384 (33%), Positives = 212/384 (55%), Gaps = 5/384 (1%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLF 73
D F I + + + LH+H + + V +SL+ Y S RK+F
Sbjct: 80 DHFVISSVASVFARLRSRRLGRQLHAHFVASPYNGDDVVKSSLVDMYCKCGSPDDGRKVF 139
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
D + +N+V W ++ GY+ +G EA F MP RN+ +W+A+I+ +N G ++
Sbjct: 140 DSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVE 199
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
LF EM + D + V+ + L + ++G+ HG ++ + N + L+D
Sbjct: 200 LFVEMRRDGVRIDDAFVLSIVIGASADLAA--FVLGRQLHGSAMRLGFLSNMIVGNALID 257
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
MY+KC + A VFE + R+VISWT ++ G A G +E+AL+L++ M G KPNE+T
Sbjct: 258 MYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVT 317
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
F G++ AC H GLV +GR+ F+ + EY + PR+QHY C +DL ++G L EA E++ TM
Sbjct: 318 FVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTM 377
Query: 314 RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEG 373
EP+ WG+ L+AC ++K +M R+ + L + +P+ D + L+ ++Y +N KW+
Sbjct: 378 PYEPDEATWGALLSACTKYKDAEMCIRISDKLLEL-RPK-DSSTYILLSNVYAVNGKWDS 435
Query: 374 AERVRKLMLNQNVRKARGSSVISS 397
+VRK M+ +RK G S I +
Sbjct: 436 VAKVRKCMIGLEIRKEPGYSWIEA 459
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 94/180 (52%), Gaps = 6/180 (3%)
Query: 86 TMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLT 145
++ Y+KS + +A F+ P R++ +S+++ A ++ + + L + R M+S + L
Sbjct: 19 ALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAISHSASPELALPILRCMLSADALH 78
Query: 146 PDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYAL 205
PD I +V S + L S L G+ H V + + ++ + + LVDMY KCG
Sbjct: 79 PDHFVISSVASVFARLRSRRL--GRQLHAHFVASPYNGDDVVKSSLVDMYCKCGSPDDGR 136
Query: 206 MVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG 265
VF+ M +N + WTAL+ G A G SE+AL LF M N +T +++ V+TG
Sbjct: 137 KVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGR----NLFAWTALISGLVNTG 192
>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
Length = 645
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 139/428 (32%), Positives = 224/428 (52%), Gaps = 38/428 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+ M V + ++ +LK+C+ + +HSH G S V+V T+L+
Sbjct: 94 IDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDF 153
Query: 61 YVVTSFGF-ARKLFDELPERNAVTWNTMIKGYSKSG---------------NVCE----- 99
Y A++LF + R+ V WN MI G S G +C
Sbjct: 154 YAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTI 213
Query: 100 ------------ARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD 147
AR F+ M +RN SWSAMI Y+ + L +FR M+ G+ PD
Sbjct: 214 VGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFR-MMQLSGIDPD 272
Query: 148 QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMV 207
T+ VL CSHL + L G +HG+++ + + I L+DMY+KCG + +A V
Sbjct: 273 LTTMLGVLPACSHLAA--LQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREV 330
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
F M+ +++SW A+I G G +AL LF + A G+KP+++TF +L++C H+GLV
Sbjct: 331 FNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLV 390
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
EGR +F + ++ + PR++H CMVD+ G+AG ++EA+ IR M EP+V IW + L+
Sbjct: 391 MEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLS 450
Query: 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVR 387
AC+ HK ++ E V K+ ++ + PE+ G F L+ ++Y+ +W+ A +R + ++
Sbjct: 451 ACRIHKNIELGEEVSKK-IQSLGPESTGN-FVLLSNIYSAAGRWDDAAHIRITQKDWGLK 508
Query: 388 KARGSSVI 395
K G S I
Sbjct: 509 KIPGCSWI 516
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 139/313 (44%), Gaps = 44/313 (14%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPER 79
LH+L++C +LT +H H LK + +S+LH+
Sbjct: 12 LHLLEACIQSKSLTEAKKIHQHFLK----NTSNADSSVLHK------------------- 48
Query: 80 NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI 139
+ + Y V AR F+ +P +V W+ +I AY G +D + L+ M+
Sbjct: 49 -------LTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSML 101
Query: 140 SNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG 199
+ G+ P++ T VL CS G + + G H E + + T LVD YAKCG
Sbjct: 102 -HLGVRPNKYTYPFVLKACS--GLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCG 158
Query: 200 FLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLT 259
L A +F M R+V++W A+I G + G +DA+ L MQ G+ PN T GVL
Sbjct: 159 ILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLP 218
Query: 260 ACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRL---E 316
C + RK F ++ ++ + M+ + + ++EA ++ R M+L +
Sbjct: 219 TC---QCLLYARKIFDVMGVRNEVS-----WSAMIGGYVASDCMKEALDIFRMMQLSGID 270
Query: 317 PNVIIWGSFLAAC 329
P++ L AC
Sbjct: 271 PDLTTMLGVLPAC 283
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 10/194 (5%)
Query: 154 VLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE 213
+L C + S L K H +KN + + L +Y C + A +F+ +
Sbjct: 14 LLEAC--IQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPN 71
Query: 214 RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG--- 270
+VI W +I A G + A+ L+ M GV+PN+ T+ VL AC +++G
Sbjct: 72 PSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEI 131
Query: 271 RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330
+ KM + LE + +VD + K G L EA + +M +V+ W + +A C
Sbjct: 132 HSHAKM----FGLESDVFVCTALVDFYAKCGILVEAQRLFSSMS-HRDVVAWNAMIAGCS 186
Query: 331 EHKQFDMAERVIKQ 344
+ D A ++I Q
Sbjct: 187 LYGLCDDAVQLIMQ 200
>gi|125573086|gb|EAZ14601.1| hypothetical protein OsJ_04525 [Oryza sativa Japonica Group]
Length = 616
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 121/327 (37%), Positives = 199/327 (60%), Gaps = 5/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR+LFD++P+R+ V WN+MI GY++ G + EAR FE MP RNV SWS +I Y+ G
Sbjct: 232 ARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEP 291
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ L+ F+ M+ G+ PD++ ++ C+ LG+ L G+ H ++ K + + +
Sbjct: 292 NEALEFFQRMLRC-GIKPDRVAAVGAVAACAQLGA--LEQGRWLHSYLEKKKVLFDVVVQ 348
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
T L+DMY KCG L A ++FE M +++V++W +I G GY DA+ LF M+
Sbjct: 349 TALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAP 408
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
++++ VLT+C H GLV EG F ++++ LEP+++HYG ++DL G+AG +++A
Sbjct: 409 MDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARN 468
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
I TM +EP +WGS LA+C+ H+ ++AE +++ + +D GV+ L+ ++Y
Sbjct: 469 TIETMPMEPTPELWGSLLASCRSHRCVELAELSVERLASL--GADDSGVYVLLSNIYADE 526
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
W+ R+RKLM + ++K G SVI
Sbjct: 527 GMWDDVFRIRKLMSAEGMKKNIGRSVI 553
>gi|297741566|emb|CBI32698.3| unnamed protein product [Vitis vinifera]
Length = 493
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 138/430 (32%), Positives = 222/430 (51%), Gaps = 40/430 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++ + QM + V D F+ I+K+C+ ++ + LH+H+LK F +H+ +L+
Sbjct: 26 LEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISM 85
Query: 61 YVVTSFGF-ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR---NVASWS 116
Y ++ A +F + R+ ++W +MI G+S+ G EA +F+ M + ++ +W+
Sbjct: 86 YTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGRPDLVAWN 145
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLT------------------------------- 145
A+IA + G + F EM N L
Sbjct: 146 AIIAGFA-YGELRDAIFFFEEMRCNADLVSWNAILTACMRHDQAEEVFRLLKLMCISQHR 204
Query: 146 PDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYAL 205
PD +T+ VL + +V + +G H + +K + + L+D+YAKCG LK A
Sbjct: 205 PDYITLTNVLGASAE--TVSIEIGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGSLKTAH 262
Query: 206 MVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG 265
+F+ M +V+SW++LI G A GY E+AL LF+ M+ VKPN +TF GVLTAC H G
Sbjct: 263 KIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVG 322
Query: 266 LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSF 325
LV+EG K + +++E+ + P +H CMVDL +AG L EA I M +P++++W +
Sbjct: 323 LVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQMAFDPDIVVWKTL 382
Query: 326 LAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQN 385
LAACK H D+ +R + L+ + P N L+C++Y WE R+R LM +
Sbjct: 383 LAACKTHGNVDVGKRAAENILK-IDPSNSAA-HVLLCNIYASKGNWEDVARLRSLMKQRG 440
Query: 386 VRKARGSSVI 395
VRK G S I
Sbjct: 441 VRKVPGQSWI 450
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 135/292 (46%), Gaps = 31/292 (10%)
Query: 107 MPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGL 166
MP RNV SW+++IA Y G L+ + +M+ + G+ PDQ T G+++ CS LG +GL
Sbjct: 1 MPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQS-GVMPDQFTFGSIIKACSSLGDIGL 59
Query: 167 LMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGS 226
G+ H ++K+E+ + L+ MY K + AL VF M R++ISW ++I G
Sbjct: 60 --GRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGF 117
Query: 227 AHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR 286
+ GY +AL F+ M G +P+ + + ++ G Y ++ D + E
Sbjct: 118 SQLGYELEALCYFKEMLHQG-RPDLVAWNAIIA----------GFAYGELRDAIFFFE-- 164
Query: 287 IQHYGCMVDLFGKAGFL------EEAYEVIRTMRL------EPNVIIWGSFLAACKEHKQ 334
C DL L ++A EV R ++L P+ I + L A E
Sbjct: 165 --EMRCNADLVSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVS 222
Query: 335 FDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386
++ +V AL+ D V + DLY + A ++ M+N +V
Sbjct: 223 IEIGNQVHCYALK-TGLNCDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDV 273
>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
Length = 726
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 126/394 (31%), Positives = 231/394 (58%), Gaps = 7/394 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF +M Q P D +I IL++C H +L ++H +++ G+ + L++
Sbjct: 208 IKLFMEMVNQFKP-DLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINM 266
Query: 61 YVVTSFGFA-RKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A +++F + +++V+WN+MI Y ++G + ++ FE M R++ +W+ +I
Sbjct: 267 YAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWNTII 326
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A+ +++ + GL++ M EG+TPD T+ ++L CS L + GK HG I K
Sbjct: 327 ASCVHSEDCNLGLRMISRM-RTEGVTPDMATMLSILPVCSLLAAKR--QGKEIHGCIFKL 383
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
E + + +L++MY+KCG L+ + VF+LM+ ++V++WTALI G + A+ F
Sbjct: 384 GLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAF 443
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M+A G+ P+ + F ++ AC H+GLV+EG YF + ++Y +EPRI+HY C+VDL +
Sbjct: 444 GEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSR 503
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
+ L++A + I +M L+P+ IWG+ L+AC+ ++AERV ++ + + P+ D G +
Sbjct: 504 SALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIEL-NPD-DTGYYV 561
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
L+ ++Y KW+ +RK + + ++K G S
Sbjct: 562 LVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCS 595
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/378 (23%), Positives = 166/378 (43%), Gaps = 74/378 (19%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+S+ R + D+++ ++ +C + + +H +L +GF S +Y+
Sbjct: 100 LSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIG------ 153
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
N +I Y + ++ +AR FE MPLR+V SW+++I+
Sbjct: 154 ------------------------NALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLIS 189
Query: 121 AYLNAGAYDPGL-------KLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH 173
Y G ++ L KLF EM++ PD +TI ++L C HLG L GK H
Sbjct: 190 GYNANGYWNEALEIYYQSIKLFMEMVNQ--FKPDLLTITSILQACGHLGD--LEFGKYVH 245
Query: 174 GFIVKNEWELNEQIATILVDMYAKCGFL-------------------------------K 202
+++ + +E + + IL++MYAKCG L
Sbjct: 246 DYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMG 305
Query: 203 YALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACV 262
+L VFE M+ R++I+W +I H L + M+ GV P+ T +L C
Sbjct: 306 DSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCS 365
Query: 263 HTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
+G++ I + LE + +++++ K G L +++V + M+ + +V+ W
Sbjct: 366 LLAAKRQGKEIHGCI-FKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTK-DVVTW 423
Query: 323 GSFLAACKEHKQFDMAER 340
+ ++AC + + A R
Sbjct: 424 TALISACGMYGEGKKAVR 441
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 13/226 (5%)
Query: 108 PLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL 167
P NV W+++I A + G + L L+ E L PD T +V++ C+ G +
Sbjct: 76 PSNNVYLWNSIIRALTHNGLFSEALSLYSE-TQRIRLQPDTYTFPSVINACA--GLLDFE 132
Query: 168 MGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSA 227
M KS H ++ + + I L+DMY + L A VFE M R+V+SW +LI G
Sbjct: 133 MAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYN 192
Query: 228 HRGYSEDALSLFE------MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK-MIDEE 280
GY +AL ++ M KP+ +T T +L AC H G ++ G+ MI
Sbjct: 193 ANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSG 252
Query: 281 YDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
Y+ + + +++++ K G L + EV M+ + +V W S +
Sbjct: 253 YECDTTASNI--LINMYAKCGNLLASQEVFSGMKCKDSV-SWNSMI 295
>gi|356541211|ref|XP_003539074.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Glycine max]
Length = 548
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 147/440 (33%), Positives = 230/440 (52%), Gaps = 46/440 (10%)
Query: 1 MQLFSQMH--RQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL 58
+ +FS+M + P+ F I +LK+C H + +H ILK F +V++SL+
Sbjct: 113 LAVFSEMQAVQGLTPNYVFVIPSVLKACGHVGDRITGEKIHGFILKCSFELDSFVSSSLI 172
Query: 59 HEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL----RNVA 113
Y ARK+FD + ++ V N ++ GY + G EA E M L NV
Sbjct: 173 VMYSKCAKVEDARKVFDGMTVKDTVALNAVVAGYVQQGAANEALGLVESMKLMGLKPNVV 232
Query: 114 SWSAMIAAYLNAGAYDPGLKLFREMISN-------------------------------- 141
+W+++I+ + G ++FR MI++
Sbjct: 233 TWNSLISGFSQKGDQGRVSEIFRLMIADGVEPDVVSWTSVISGFVQNFRNKEAFDTFKQM 292
Query: 142 --EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG 199
G P TI A+L C+ V + G+ HG+ + E + + + LVDMYAKCG
Sbjct: 293 LSHGFHPTSATISALLPACATAARVSV--GREIHGYALVTGVEGDIYVRSALVDMYAKCG 350
Query: 200 FLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV-KPNEMTFTGVL 258
F+ A +F M E+N ++W ++I G A+ GY E+A+ LF M+ GV K + +TFT L
Sbjct: 351 FISEARNLFSRMPEKNTVTWNSIIFGFANHGYCEEAIELFNQMEKEGVAKLDHLTFTAAL 410
Query: 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPN 318
TAC H G + G++ FK++ E+Y +EPR++HY CMVDL G+AG L EAY +I+TM +EP+
Sbjct: 411 TACSHVGDFELGQRLFKIMQEKYSIEPRLEHYACMVDLLGRAGKLHEAYCMIKTMPIEPD 470
Query: 319 VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVR 378
+ +WG+ LAAC+ H+ ++AE V L ++PE+ L+ +Y KW ERV+
Sbjct: 471 LFVWGALLAACRNHRHVELAE-VAAMHLMELEPESAANPL-LLSSVYADAGKWGKFERVK 528
Query: 379 KLMLNQNVRKARGSSVISSL 398
K + +RK +G S I +L
Sbjct: 529 KRIKKGKLRKLQGLSWIENL 548
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 90/315 (28%), Positives = 164/315 (52%), Gaps = 22/315 (6%)
Query: 58 LHEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
LH ++VT+ GFAR F+ V + ++ Y+ G + AR F+++P NV W A
Sbjct: 49 LHAHLVTN-GFAR--FN-------VVASNLVSFYTCCGQLSHARKLFDKIPTTNVRRWIA 98
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQM-TIGAVLSGCSHLGSVGLLMGKSAHGFI 176
+I + G YD L +F EM + +GLTP+ + I +VL C H+G + G+ HGFI
Sbjct: 99 LIGSCARCGFYDHALAVFSEMQAVQGLTPNYVFVIPSVLKACGHVGD--RITGEKIHGFI 156
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
+K +EL+ +++ L+ MY+KC ++ A VF+ M ++ ++ A++ G +G + +AL
Sbjct: 157 LKCSFELDSFVSSSLIVMYSKCAKVEDARKVFDGMTVKDTVALNAVVAGYVQQGAANEAL 216
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR--KYFKMIDEEYDLEPRIQHYGCMV 294
L E M+ G+KPN +T+ +++ G D+GR + F+++ + +EP + + ++
Sbjct: 217 GLVESMKLMGLKPNVVTWNSLISGFSQKG--DQGRVSEIFRLMIAD-GVEPDVVSWTSVI 273
Query: 295 DLFGKAGFLEEAYEVIRTM---RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351
F + +EA++ + M P + L AC + + + AL +
Sbjct: 274 SGFVQNFRNKEAFDTFKQMLSHGFHPTSATISALLPACATAARVSVGREIHGYAL-VTGV 332
Query: 352 ENDGGVFTLICDLYT 366
E D V + + D+Y
Sbjct: 333 EGDIYVRSALVDMYA 347
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 5/160 (3%)
Query: 165 GLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALIC 224
L GK H +V N + +A+ LV Y CG L +A +F+ + NV W ALI
Sbjct: 42 ALHAGKKLHAHLVTNGFARFNVVASNLVSFYTCCGQLSHARKLFDKIPTTNVRRWIALIG 101
Query: 225 GSAHRGYSEDALSLFEMMQAT-GVKPNEM-TFTGVLTACVHTGLVDEGRKYFKMIDE-EY 281
A G+ + AL++F MQA G+ PN + VL AC H G G K I + +
Sbjct: 102 SCARCGFYDHALAVFSEMQAVQGLTPNYVFVIPSVLKACGHVGDRITGEKIHGFILKCSF 161
Query: 282 DLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVII 321
+L+ + ++ ++ K +E+A +V M ++ V +
Sbjct: 162 ELDSFVS--SSLIVMYSKCAKVEDARKVFDGMTVKDTVAL 199
>gi|224083626|ref|XP_002307076.1| predicted protein [Populus trichocarpa]
gi|222856525|gb|EEE94072.1| predicted protein [Populus trichocarpa]
Length = 733
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 147/423 (34%), Positives = 229/423 (54%), Gaps = 38/423 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHH---LHSHILKLGFISHVYVATSL 57
+ LF M V D + IL F N ++ H I++ ++ V +L
Sbjct: 321 LNLFWDMQVDDVYPDGIVVSCILLG---FGNSMMVREGKAFHGLIVRRNYVLDDTVNNAL 377
Query: 58 LHEYV-VTSFGFARKLFDELPERNAVTWNTMIKGY------------------------S 92
L Y + A KLFD + E + +WNTM+ GY
Sbjct: 378 LSMYCKFGTLNPAEKLFDGVHEWSKESWNTMVFGYVHCYIIKNSVDEDVSIANSLIDMYG 437
Query: 93 KSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIG 152
K GN+ A F R R+V +W+ +I++Y ++G Y + LF EMIS E L P+ T+
Sbjct: 438 KGGNLSIAWKMFCRTQ-RDVVTWNTLISSYTHSGHYAEAITLFDEMIS-EKLNPNSATLV 495
Query: 153 AVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME 212
VLS C HL S L GK H +I + +ELN + T LVDMYAKCG L+ + +F M+
Sbjct: 496 IVLSACCHLPS--LEKGKMVHQYIKEGGFELNVSLGTALVDMYAKCGQLEQSRELFNSMK 553
Query: 213 ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK 272
E++VISW +I G G + A+ +F+ M+ + VKPN +TF +L+AC H G VDEG++
Sbjct: 554 EKDVISWNVMISGYGLHGDANSAMEVFQQMEQSNVKPNAITFLSLLSACTHAGYVDEGKQ 613
Query: 273 YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
F + + Y ++P ++H+ CM DL G++G L+EA +++++M + P+ +WG+ L+ACK H
Sbjct: 614 LFDRM-QYYSIKPNLKHFACMADLLGRSGNLQEAEDLVQSMPICPDGGVWGTLLSACKIH 672
Query: 333 KQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGS 392
+ ++ RV K A+ PEND G + ++ ++Y KW+ AER R+LM + + K G
Sbjct: 673 NEIEIGIRVAKCAIE-SDPEND-GYYIMLSNMYGSMGKWDEAERARELMKERGIGKRAGW 730
Query: 393 SVI 395
S +
Sbjct: 731 SAV 733
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 143/308 (46%), Gaps = 36/308 (11%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+ QM + P + F+I I+ +C L ++H + K G
Sbjct: 116 DFYIQMRYDNTPPNQFTIPMIVATCAELLWLEEGKYIHGLVSKSG--------------- 160
Query: 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
LF E N+ ++ + Y+K G + +A F+ + +R+V SW+A++
Sbjct: 161 ----------LFAE----NSAVGSSFVYMYAKCGVMEDASLMFDEIVVRDVVSWTALVIG 206
Query: 122 YLNAGAYDPGLKLFREM--ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y++ + GL+ EM I +G + T+ C +LG+ ++ G+ HG VK
Sbjct: 207 YVHNDDSEKGLECLCEMRRIGGDGEKVNSRTLEGGFQACGNLGA--MIAGRCLHGLAVKT 264
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
++ + + L+ MY+KCG ++ A F + +++V SWT++I A G+ + L+LF
Sbjct: 265 GLGCSQVVQSSLLSMYSKCGNVEEAHNSFCQVVDKDVFSWTSVIGVCARFGFMNECLNLF 324
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI-DEEYDLEPRIQHYGCMVDLFG 298
MQ V P+ + + +L ++ +V EG+ + +I Y L+ + + ++ ++
Sbjct: 325 WDMQVDDVYPDGIVVSCILLGFGNSMMVREGKAFHGLIVRRNYVLDDTVNN--ALLSMYC 382
Query: 299 KAGFLEEA 306
K G L A
Sbjct: 383 KFGTLNPA 390
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 82/309 (26%), Positives = 140/309 (45%), Gaps = 53/309 (17%)
Query: 32 LTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARK------LFDELPERNAVTWN 85
L +H H+ I+ G ++V++++ L+ Y SF RK +FD +++ WN
Sbjct: 45 LQSLHKSHALIITTGNANNVFISSKLISLY--ASF---RKPHSSTYVFDSTNQKDTFLWN 99
Query: 86 TMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLT 145
++IK + +GN +A DF+ +M N
Sbjct: 100 SIIKSHFSNGNYFKAFDFYIQMRYDNTP-------------------------------- 127
Query: 146 PDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE-WELNEQIATILVDMYAKCGFLKYA 204
P+Q TI +++ C+ L + L GK HG + K+ + N + + V MYAKCG ++ A
Sbjct: 128 PNQFTIPMIVATCAEL--LWLEEGKYIHGLVSKSGLFAENSAVGSSFVYMYAKCGVMEDA 185
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALS-LFEM--MQATGVKPNEMTFTGVLTAC 261
++F+ + R+V+SWTAL+ G H SE L L EM + G K N T G AC
Sbjct: 186 SLMFDEIVVRDVVSWTALVIGYVHNDDSEKGLECLCEMRRIGGDGEKVNSRTLEGGFQAC 245
Query: 262 VHTGLVDEGRKYFKM-IDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVI 320
+ G + GR + + +Q ++ ++ K G +EEA+ + ++ +V
Sbjct: 246 GNLGAMIAGRCLHGLAVKTGLGCSQVVQ--SSLLSMYSKCGNVEEAHNSFCQV-VDKDVF 302
Query: 321 IWGSFLAAC 329
W S + C
Sbjct: 303 SWTSVIGVC 311
>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 606
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 124/395 (31%), Positives = 222/395 (56%), Gaps = 34/395 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+ M ++ + F+ +LK+C L + +H ++K GF ++V +++H
Sbjct: 117 LALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHM 176
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
Y + G + AR F+ MP + +WSAMI
Sbjct: 177 YSCCA-----------------------------GGINSARKVFDEMPKSDSVTWSAMIG 207
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y G + LFREM E + PD++T+ ++LS C+ LG+ L +GK +I ++E
Sbjct: 208 GYARVGRSTEAVALFREMQMAE-VCPDEITMVSMLSACTDLGA--LELGKWIEAYIERHE 264
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+++ L+DM+AKCG + AL +F M E+ ++SWT++I G A G ++A LFE
Sbjct: 265 IHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLFE 324
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M ++GV P+++ F G+L+AC H+GLV+ GR+YF + ++Y L P+I+HYGCMVD++ +
Sbjct: 325 EMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYCRT 384
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G ++EA E +R M +EPN +I + ++AC+ H +F + E++ K ++ +P ++ + L
Sbjct: 385 GLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEKITKLLMKH-EPLHESN-YVL 442
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y WE ++R++M + ++K GS++I
Sbjct: 443 LSNIYAKTLSWEKKTKIREVMEVKGMKKVPGSTMI 477
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 157/321 (48%), Gaps = 48/321 (14%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVAT------SLLHEY-VVTSFGFARKL 72
L +L++C LT IH +HILKLG ++ V T SL+H SF F+ +
Sbjct: 33 LALLQACNALPKLTQIH---THILKLGLHNNPLVLTKFASISSLIHATDYAASFLFSAEA 89
Query: 73 FDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGL 132
L +A +NT+I+ Y+++G+ + D L
Sbjct: 90 DTRL--YDAFLFNTLIRAYAQTGH------------------------------SKDKAL 117
Query: 133 KLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILV 192
L+ M+ ++ + P++ T VL C+ L + L G++ HG +VK ++ + + +V
Sbjct: 118 ALYGIML-HDAILPNKFTYPFVLKACAGLEVLNL--GQTVHGSVVKFGFDCDIHVQNTMV 174
Query: 193 DMYAKC-GFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE 251
MY+ C G + A VF+ M + + ++W+A+I G A G S +A++LF MQ V P+E
Sbjct: 175 HMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDE 234
Query: 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR 311
+T +L+AC G ++ G K+ + E +++ ++ ++D+F K G + +A ++ R
Sbjct: 235 ITMVSMLSACTDLGALELG-KWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFR 293
Query: 312 TMRLEPNVIIWGSFLAACKEH 332
M E ++ W S + H
Sbjct: 294 AMN-EKTIVSWTSVIVGMAMH 313
>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g40405
gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 612
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 126/382 (32%), Positives = 220/382 (57%), Gaps = 6/382 (1%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLF 73
D++++ ++++CT +H ++ GF + +V T L+ Y + K+F
Sbjct: 107 DNYTVNFLVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVF 166
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
+ +P + V M+ ++ G+V AR FE MP R+ +W+AMI+ Y G L
Sbjct: 167 NSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALN 226
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
+F ++ EG+ + + + +VLS C+ LG+ L G+ AH +I +N+ ++ ++AT LVD
Sbjct: 227 VF-HLMQLEGVKVNGVAMISVLSACTQLGA--LDQGRWAHSYIERNKIKITVRLATTLVD 283
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
+YAKCG ++ A+ VF MEE+NV +W++ + G A G+ E L LF +M+ GV PN +T
Sbjct: 284 LYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVT 343
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
F VL C G VDEG+++F + E+ +EP+++HYGC+VDL+ +AG LE+A +I+ M
Sbjct: 344 FVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQM 403
Query: 314 RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEG 373
++P+ +W S L A + +K ++ K+ L + + G + L+ ++Y + W+
Sbjct: 404 PMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANH--GAYVLLSNIYADSNDWDN 461
Query: 374 AERVRKLMLNQNVRKARGSSVI 395
VR+ M ++ VRK G SV+
Sbjct: 462 VSHVRQSMKSKGVRKQPGCSVM 483
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 104/229 (45%), Gaps = 37/229 (16%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F M + V + +++ +L +CT L HS+I + V +AT
Sbjct: 225 LNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLAT----- 279
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
T++ Y+K G++ +A + F M +NV +WS+ +
Sbjct: 280 -------------------------TLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALN 314
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
G + L+LF ++ +G+TP+ +T +VL GCS VG + H ++NE
Sbjct: 315 GLAMNGFGEKCLELF-SLMKQDGVTPNAVTFVSVLRGCS---VVGFVDEGQRHFDSMRNE 370
Query: 181 WELNEQIA--TILVDMYAKCGFLKYALMVFELMEER-NVISWTALICGS 226
+ + Q+ LVD+YA+ G L+ A+ + + M + + W++L+ S
Sbjct: 371 FGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHAS 419
>gi|38567725|emb|CAE76014.1| B1358B12.23 [Oryza sativa Japonica Group]
Length = 918
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 132/320 (41%), Positives = 190/320 (59%), Gaps = 6/320 (1%)
Query: 76 LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF 135
L N+ N +I Y + GN AR F + ++V +WSA+I++Y + G L L+
Sbjct: 450 LAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLY 509
Query: 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY 195
+M++ EG+ P+ T+ +V+S C++L + L G+ H + E + I T LVDMY
Sbjct: 510 DQMLT-EGVKPNSATLVSVISSCANLAA--LEHGELIHSHVKDVGLECDLSICTALVDMY 566
Query: 196 AKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT 255
KCG L A +F+ M ER+V++W +I G G + AL LF MM+ VKPN +TF
Sbjct: 567 MKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFL 626
Query: 256 GVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRL 315
+L+AC H GLVD+GR+ F + EEY LEP ++HY CMVDL GK+G L+EA +V+ M +
Sbjct: 627 AILSACCHAGLVDKGRELFTRM-EEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPI 685
Query: 316 EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAE 375
EP+ IWG+ L ACK H F+M RV K+A PEND G + L+ + Y EKW E
Sbjct: 686 EPDGGIWGTLLGACKMHDNFEMGLRVAKKAF-ASDPEND-GYYILMSNSYGSAEKWNEIE 743
Query: 376 RVRKLMLNQNVRKARGSSVI 395
++R +M N V K+ G S I
Sbjct: 744 KLRDMMKNHGVEKSIGWSTI 763
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 123/250 (49%), Gaps = 8/250 (3%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI---SN 141
++++ Y++ G+V +A F+ MP R+V +W+A+I+ + G GL M+ +
Sbjct: 149 SSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGD 208
Query: 142 EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFL 201
G P+ T+ + L C LG L +G HGF VK + + L MY KC
Sbjct: 209 GGARPNSRTMESGLEACGVLGE--LSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDST 266
Query: 202 KYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261
+ A ++F + E++++SWT+LI G++E A+ LF M+ +G++P+E+ + +L
Sbjct: 267 EDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGL 326
Query: 262 VHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVII 321
+ V G+ + I + + ++ ++ K ++ A V R + + +
Sbjct: 327 GNDAKVRGGKTFHAAIVRR-NFGDSVLIGNALISMYAKCKQVDIAATVFRMLH-QRDTDS 384
Query: 322 WGSFLAA-CK 330
W S + A CK
Sbjct: 385 WSSMVVAYCK 394
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 3/159 (1%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
+++ Y+K + +AR F +P +++ SW+++I AY AG + ++LF M GL
Sbjct: 254 SSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGM-EESGL 312
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
PD++ I +L+G + V GK+ H IV+ + + I L+ MYAKC + A
Sbjct: 313 QPDEVVISCLLAGLGNDAKV--RGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIA 370
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQ 243
VF ++ +R+ SW++++ G L L+ MQ
Sbjct: 371 ATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQ 409
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 84/161 (52%), Gaps = 10/161 (6%)
Query: 108 PLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL 167
P + W++++ + A + L R M ++ G P + T V S + LG+ L
Sbjct: 68 PCPDAFLWNSLLRSRHRASDFASTLSAHRRMRAS-GARPSRFTAPLVASAAAELGA--LP 124
Query: 168 MGKSAHGFIVKN---EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALIC 224
+G + H + V+ E + + +A+ LV MYA+CG ++ A+ +F+ M ER+V++WTA+I
Sbjct: 125 VGAAVHAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVIS 184
Query: 225 GSAHRGYSEDALS-LFEMMQAT---GVKPNEMTFTGVLTAC 261
G G + LS L M+++ G +PN T L AC
Sbjct: 185 GCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEAC 225
>gi|68611229|emb|CAE03043.3| OSJNBa0084A10.18 [Oryza sativa Japonica Group]
Length = 729
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 117/327 (35%), Positives = 195/327 (59%), Gaps = 9/327 (2%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A KLF E+P+R+ ++WN +++GY + G++ A +F R P ++ SW+ +I+ Y + GA
Sbjct: 301 ALKLFSEMPDRDQISWNAILQGYVQQGDMDSANAWFRRAPNKDAISWNTLISGYKDEGA- 359
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L L EMI GL PDQ T+ V+S C+ L S+G GK H + +K +E + +
Sbjct: 360 ---LSLLSEMIRG-GLKPDQATLSVVISICASLVSLGC--GKMVHLWAIKTGFEHDALVM 413
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
+ L+ MY+KCG + A VFEL+ +R+ ++W A+I A+ G +++AL +F+MM G +
Sbjct: 414 SSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFR 473
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+ TF +L+AC H G + EG +F+ + E+++L PR HY CMVDL G++GF+ +AY+
Sbjct: 474 PDHATFLSILSACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYSCMVDLLGRSGFIHQAYD 533
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
R + + W + + C H + + E + + L+ +P +DGG++TL+ ++Y
Sbjct: 534 FTRRIPSDHRTTAWETLFSVCNSHGEIQLGEIIARNVLK-ARP-SDGGMYTLLSNIYAAK 591
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
E W A VR M + ++K G S I
Sbjct: 592 EMWSSAASVRGFMKERGLKKETGCSWI 618
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 130/285 (45%), Gaps = 37/285 (12%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
ARK+FD +P RN+V+W ++ GY++ G V EAR+ F R+P RNV SW+AM++ Y G
Sbjct: 84 ARKVFDAMPVRNSVSWAALLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMV 143
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE--- 185
+LF M + ++ M G + K H V+ EL +
Sbjct: 144 KRARELFDMMPWRDDVSWLTMISGYI---------------KRKH---VREARELFDSMP 185
Query: 186 ----QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ L+ Y + G+++ A ++F M+ RN +SW +I G A G A LF+
Sbjct: 186 SPPTSVCNALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDE 245
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR-IQHYGCMVDLFGKA 300
M V ++ T ++ + G VD K FK D+ R + M+D F +
Sbjct: 246 MPEKDV----LSRTAIMRGYLQNGSVDAAWKVFK------DMPHRDTVAWNTMMDGFVRN 295
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQA 345
L++A ++ M + + I W + L + D A ++A
Sbjct: 296 DRLDDALKLFSEMP-DRDQISWNAILQGYVQQGDMDSANAWFRRA 339
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/285 (20%), Positives = 114/285 (40%), Gaps = 32/285 (11%)
Query: 104 FERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSG---CSH 160
F+ M RNV +W+ M++ + K+F M + ++ A+L+G C
Sbjct: 57 FDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMP-----VRNSVSWAALLTGYARCGR 111
Query: 161 LGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWT 220
+ L + +V W +V YA+ G +K A +F++M R+ +SW
Sbjct: 112 VAEARELFNRIPDRNVV--SW-------NAMVSGYARNGMVKRARELFDMMPWRDDVSWL 162
Query: 221 ALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE 280
+I G R + +A LF+ M + P +L+ V G + F +
Sbjct: 163 TMISGYIKRKHVREARELFDSMPS----PPTSVCNALLSGYVELGYMRAAEVLFGQMQTR 218
Query: 281 YDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAER 340
+ + M+ + +AG + A + M E +V+ + + ++ D A +
Sbjct: 219 NPVS-----WNVMITGYARAGSMGIAQRLFDEMP-EKDVLSRTAIMRGYLQNGSVDAAWK 272
Query: 341 VIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQN 385
V K P D + + D + N++ + A ++ M +++
Sbjct: 273 VFKDM-----PHRDTVAWNTMMDGFVRNDRLDDALKLFSEMPDRD 312
>gi|345505210|gb|AEN99829.1| chlororespiratory reduction 4, partial [Barbarea verna]
Length = 588
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 120/327 (36%), Positives = 199/327 (60%), Gaps = 4/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A+ LF +P R+ VTW TMI GY+K G V +A+ F++MP R+V ++++M+A Y+
Sbjct: 246 AKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNKYN 305
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L++F +M L+PD+ T+ VLS + LG + M H +IV+ ++ L ++
Sbjct: 306 MEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAM--DMHLYIVEKQFFLGGKLG 363
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+DMY+KCG ++ A++VFE +E +++ W A+I G A G E A + ++ +K
Sbjct: 364 VALIDMYSKCGSIQQAMLVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLLEIERRSIK 423
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+++TF G+L AC H+GLV EG F+++ ++ +EPR+QHYGCMVD+ ++G +E A
Sbjct: 424 PDDITFVGILNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKN 483
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+I M +EPN +IW +FL AC HK+F+ E V K + ++ + + L+ ++Y
Sbjct: 484 LIEEMPMEPNDVIWRTFLTACSHHKEFETGEVVAKHLI--LQAGYNPSSYVLLSNMYASF 541
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
W+ A RVR +M + ++K G S I
Sbjct: 542 GMWKDARRVRTMMKERELQKVPGCSWI 568
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/361 (26%), Positives = 182/361 (50%), Gaps = 29/361 (8%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV- 62
F M V D FS+ +LK+C+ + +H + K G S +++ L+ Y+
Sbjct: 84 FCLMLENGVSVDKFSLSLVLKACSRLGFVQEGMQIHGFLRKTGIWSDLFLQNCLIGLYLK 143
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP--LRNVASWSAMIA 120
GFAR++FD +P+R++V++N+MI GY K G + AR+ F+ MP ++N+ SW++MI+
Sbjct: 144 CGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIGSARELFDLMPKEMKNLISWNSMIS 203
Query: 121 AYLN-AGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y + + KLF EM + ++ + + G V G M + F V
Sbjct: 204 GYAQTSDGVNIASKLFAEMPEKDLISWNSLIDGYVKHG---------RMEDAKDLFYVMP 254
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
++ ++D YAK GF+ A +F+ M R+V+++ +++ G Y+ +AL +F
Sbjct: 255 RRDV--VTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNKYNMEALEIF 312
Query: 240 -EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLF 297
+M + + + P+E T VL+A G + + + ++++++ L ++ ++D++
Sbjct: 313 SDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLG--VALIDMY 370
Query: 298 GKAGFLEEAYEVIRTMRLEPNVII-WGSFLAACKEH----KQFDMAERVIKQALRMVKPE 352
K G +++A V R+E I W + + H FDM +++ R +KP+
Sbjct: 371 SKCGSIQQAMLVFE--RIENKSIDHWNAMIGGLAIHGLGESAFDM---LLEIERRSIKPD 425
Query: 353 N 353
+
Sbjct: 426 D 426
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 89/224 (39%), Gaps = 37/224 (16%)
Query: 195 YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTF 254
+A+C F Y F E + W A+I +H + AL F +M GV ++ +
Sbjct: 40 FARCVFQNYHSCSFAHGEVEDPFLWNAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSL 99
Query: 255 TGVLTACVHTGLVDEG-------RK----------------YFK-----MIDEEYDLEPR 286
+ VL AC G V EG RK Y K + +D P+
Sbjct: 100 SLVLKACSRLGFVQEGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQ 159
Query: 287 IQ--HYGCMVDLFGKAGFLEEAYEVIRTMRLE-PNVIIWGSFLAA-CKEHKQFDMAERVI 342
Y M+D + K G + A E+ M E N+I W S ++ + ++A ++
Sbjct: 160 RDSVSYNSMIDGYVKCGLIGSARELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLF 219
Query: 343 KQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386
+ PE D + + D Y + + E A+ + +M ++V
Sbjct: 220 AEM-----PEKDLISWNSLIDGYVKHGRMEDAKDLFYVMPRRDV 258
>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 639
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 138/459 (30%), Positives = 236/459 (51%), Gaps = 74/459 (16%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LFS M ++ DSF+ ++K+ + + LT + +HSH++KLG I YV +L+
Sbjct: 143 VSLFSAMPQR----DSFTYSFLIKALSS-SGLTPLRAVHSHVVKLGSIEDTYVGNALIDA 197
Query: 61 YVVTSFGF---------------------------------ARKLFDELPERNAVTWNTM 87
Y GF AR++FDE+P+++ V+WNT+
Sbjct: 198 YSKNG-GFLDASKVFEEMPRRDTVSWNSAMAAMVRQGEVASARRMFDEMPDKDTVSWNTV 256
Query: 88 IKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM--------- 138
+ GY+K+G + +A + F+ MP RNV SWS +++ Y G + +F +M
Sbjct: 257 LDGYTKAGKMEDAFELFQCMPERNVVSWSTVVSGYCKKGDIEMARVIFDKMPTKNLVTWT 316
Query: 139 -----ISNEGLTP----------------DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
+ GL D + ++L+ C+ GS+ L GK H ++
Sbjct: 317 IMVSACAQNGLVEEAGRLFTQMKEAAVELDVAAVVSILAACAESGSLAL--GKRIHRYVR 374
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFEL-MEERNVISWTALICGSAHRGYSEDAL 236
+ + + ++DM+ KCG + A VF+ + E++ +SW +I G A G+ + AL
Sbjct: 375 TRQLGRSTHVCNAMIDMFCKCGCVNRADYVFDTEIAEKDSVSWNTIIGGFAMHGHGDKAL 434
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
F M+ G +P+ +T VL+AC H G V+EGR++F ++ +Y + P+I+HYGCM+DL
Sbjct: 435 DFFAQMKLQGFRPDAVTMINVLSACTHMGFVEEGRQHFSNMERDYGIVPQIEHYGCMIDL 494
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
G+ G +EEA +I++M +PN +IWGS L+AC+ HK + AE + + L ++P N G
Sbjct: 495 LGRGGLIEEAVGLIKSMPWDPNEVIWGSLLSACRLHKNVEYAEIAVNE-LSKLQPSNAGN 553
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++ ++Y +W + R M +K+ GSS I
Sbjct: 554 -YAVLSNIYAEAGQWSDMAKARMQMKGTGSQKSAGSSWI 591
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 91/393 (23%), Positives = 154/393 (39%), Gaps = 69/393 (17%)
Query: 9 RQSVPSDSFSILHILKSCTH-FNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS-F 66
R PS + L S H +L + LH+ +LK G A+ L+ Y +
Sbjct: 47 RWGAPSQRRLVEQHLASLPHGLQHLHHVQELHAQLLKHGLHLDPLAASKLISSYALQRRL 106
Query: 67 GFARKLFDELPERNAVTW--NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLN 124
+R++F P A T+ NT+++ Y+ + A F MP R+ ++S +I A L+
Sbjct: 107 PASRRIFASFPNPQATTFLPNTLLRAYALNALPHAAVSLFSAMPQRDSFTYSFLIKA-LS 165
Query: 125 AGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLG---------------------- 162
+ P L+ + G D A++ S G
Sbjct: 166 SSGLTP-LRAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFLDASKVFEEMPRRDTVSWNS 224
Query: 163 --SVGLLMGKSAHGFIVKNEWELNEQIA-TILVDMYAKCGFLKYALMVFELMEERNVISW 219
+ + G+ A + +E + ++ ++D Y K G ++ A +F+ M ERNV+SW
Sbjct: 225 AMAAMVRQGEVASARRMFDEMPDKDTVSWNTVLDGYTKAGKMEDAFELFQCMPERNVVSW 284
Query: 220 TALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE 279
+ ++ G +G E A +F+ M N +T+T +++AC GLV+E + F + E
Sbjct: 285 STVVSGYCKKGDIEMARVIFDKMPTK----NLVTWTIMVSACAQNGLVEEAGRLFTQMKE 340
Query: 280 ---EYD------------------LEPRIQHY-------------GCMVDLFGKAGFLEE 305
E D L RI Y M+D+F K G +
Sbjct: 341 AAVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNAMIDMFCKCGCVNR 400
Query: 306 AYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
A V T E + + W + + H D A
Sbjct: 401 ADYVFDTEIAEKDSVSWNTIIGGFAMHGHGDKA 433
>gi|357483943|ref|XP_003612258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513593|gb|AES95216.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 907
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 130/329 (39%), Positives = 199/329 (60%), Gaps = 9/329 (2%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A LF ++P +NAV+WNTMI GY+++G + A + FE M +RNV SW+++I +L G Y
Sbjct: 378 ALNLFRQMPVKNAVSWNTMISGYAQAGEMDRATEIFEAMGVRNVISWNSLITGFLQNGLY 437
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
LK ++ EG PDQ T LS C++L + L +GK H I+K+ + + ++
Sbjct: 438 LDALKSL-VLMGQEGKKPDQSTFACSLSSCANLAA--LQVGKQLHELILKSGYINDLFVS 494
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+ MYAKCG ++ A VF+ +E ++ISW +LI G A GY+ +A FE M + G
Sbjct: 495 NALIAMYAKCGGVQSAEKVFKDIEGVDLISWNSLISGYALNGYANEAFWAFEQMSSEGTV 554
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+E+TF G+L+AC H GL ++G FK + E + +EP +HY C+VDL G+ G LEEA+
Sbjct: 555 PDEVTFIGMLSACSHAGLTNQGVDLFKCMIEGFAIEPLAEHYSCLVDLLGRMGRLEEAFN 614
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM--VKPENDGGVFTLICDLYT 366
++R M+++ N +WGS LAAC+ HK ++ + ALR+ ++P N TL +++
Sbjct: 615 IVRGMKVKANAGLWGSLLAACRVHKNMELGKIA---ALRLLELEPHNASNYITL-SNMHA 670
Query: 367 MNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+WE ER+R LM + K G S I
Sbjct: 671 EAGRWEDVERLRVLMRERRAGKLPGCSWI 699
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 140/315 (44%), Gaps = 53/315 (16%)
Query: 65 SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLN 124
G A +LF+++P+ NAV+W TM+ G+++ G + EAR F+RMP +NV SW+AMIAAY+
Sbjct: 219 DLGSAWELFEKIPDPNAVSWVTMLCGFARHGKIVEARKLFDRMPCKNVVSWNAMIAAYVQ 278
Query: 125 AGAYDPGLKLFREMISNEGLTPDQMTIGAVLSG--------------CSHLGSVGLLMGK 170
D +KLF+E + ++ M G V G L+ G
Sbjct: 279 DLQIDEAVKLFKETPYKDCVSWTTMINGYVRVGKLDEAREVYNQMPYKDVAAKTALMSGL 338
Query: 171 SAHGFIVKNEW---ELNEQIATILVDM---YAKCGFLKYALMVF---------------- 208
+G I + +LN++ A M Y + G + AL +F
Sbjct: 339 IQNGRIDEASQVFSQLNKRDAICWNSMIAGYCQSGRMSEALNLFRQMPVKNAVSWNTMIS 398
Query: 209 ---------------ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
E M RNVISW +LI G G DAL +M G KP++ T
Sbjct: 399 GYAQAGEMDRATEIFEAMGVRNVISWNSLITGFLQNGLYLDALKSLVLMGQEGKKPDQST 458
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
F L++C + + G++ ++I + + ++ ++ K G ++ A +V + +
Sbjct: 459 FACSLSSCANLAALQVGKQLHELILKSGYINDLFVS-NALIAMYAKCGGVQSAEKVFKDI 517
Query: 314 RLEPNVIIWGSFLAA 328
++I W S ++
Sbjct: 518 E-GVDLISWNSLISG 531
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 133/289 (46%), Gaps = 43/289 (14%)
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
F A K+F+++P ++ V++N+M+ GY+++G + A FFERM RNV SW+ M+A ++N
Sbjct: 158 FDDAEKVFEKMPVKDLVSYNSMLAGYTQNGKMGLAMKFFERMAERNVVSWNLMVAGFVNN 217
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV-------- 177
+LF ++ PD + V +L G + HG IV
Sbjct: 218 CDLGSAWELFEKI-------PDPNAVSWVT----------MLCGFARHGKIVEARKLFDR 260
Query: 178 ---KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
KN N IA + D+ + A+ +F+ ++ +SWT +I G G ++
Sbjct: 261 MPCKNVVSWNAMIAAYVQDLQ-----IDEAVKLFKETPYKDCVSWTTMINGYVRVGKLDE 315
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
A ++ M V T +++ + G +DE + F +++ + + M+
Sbjct: 316 AREVYNQMPYKDVAAK----TALMSGLIQNGRIDEASQVFSQLNKRDAI-----CWNSMI 366
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIK 343
+ ++G + EA + R M ++ N + W + ++ + + D A + +
Sbjct: 367 AGYCQSGRMSEALNLFRQMPVK-NAVSWNTMISGYAQAGEMDRATEIFE 414
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 149/332 (44%), Gaps = 31/332 (9%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A+++F + +N T+N+M+ ++K+G V +AR F++M RN+ SW+ MIA YL+
Sbjct: 36 AKRVFSNVIHKNHATYNSMVTVFAKNGRVSDARQLFDKMSQRNLVSWNTMIAGYLHNNMV 95
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ KLF M + + M G ++ K+ F + + +L+
Sbjct: 96 EEAHKLFDLMAERDNFSWALMITCYTRKG---------MLEKARELFELVPD-KLDTACW 145
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
++ YAK G A VFE M ++++S+ +++ G G A+ FE M V
Sbjct: 146 NAMIAGYAKKGRFDDAEKVFEKMPVKDLVSYNSMLAGYTQNGKMGLAMKFFERMAERNVV 205
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKY--FKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
+ G + C D G + F+ I +P + M+ F + G + EA
Sbjct: 206 SWNLMVAGFVNNC------DLGSAWELFEKIP-----DPNAVSWVTMLCGFARHGKIVEA 254
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366
++ M + NV+ W + +AA + Q D A ++ K+ P D +T + + Y
Sbjct: 255 RKLFDRMPCK-NVVSWNAMIAAYVQDLQIDEAVKLFKET-----PYKDCVSWTTMINGYV 308
Query: 367 MNEKWEGAERVRKLMLNQNVRKARGSSVISSL 398
K + A V M ++V A ++++S L
Sbjct: 309 RVGKLDEAREVYNQMPYKDV--AAKTALMSGL 338
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 99/222 (44%), Gaps = 41/222 (18%)
Query: 7 MHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTS 65
M ++ D + L SC + L V LH ILK G+I+ ++V+ +L+ Y
Sbjct: 447 MGQEGKKPDQSTFACSLSSCANLAALQVGKQLHELILKSGYINDLFVSNALIAMYAKCGG 506
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
A K+F ++ + ++WN++I GY+ +G EA FE+M
Sbjct: 507 VQSAEKVFKDIEGVDLISWNSLISGYALNGYANEAFWAFEQM------------------ 548
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLG--SVGLLMGKS-AHGFIVKNEWE 182
S+EG PD++T +LS CSH G + G+ + K GF ++
Sbjct: 549 --------------SSEGTVPDEVTFIGMLSACSHAGLTNQGVDLFKCMIEGFAIE---P 591
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEER-NVISWTALI 223
L E + LVD+ + G L+ A + M+ + N W +L+
Sbjct: 592 LAEHY-SCLVDLLGRMGRLEEAFNIVRGMKVKANAGLWGSLL 632
>gi|115458828|ref|NP_001053014.1| Os04g0463800 [Oryza sativa Japonica Group]
gi|38347057|emb|CAE04357.2| OSJNBa0060P14.4 [Oryza sativa Japonica Group]
gi|113564585|dbj|BAF14928.1| Os04g0463800 [Oryza sativa Japonica Group]
Length = 767
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 132/320 (41%), Positives = 190/320 (59%), Gaps = 6/320 (1%)
Query: 76 LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF 135
L N+ N +I Y + GN AR F + ++V +WSA+I++Y + G L L+
Sbjct: 450 LAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLY 509
Query: 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY 195
+M++ EG+ P+ T+ +V+S C++L + L G+ H + E + I T LVDMY
Sbjct: 510 DQMLT-EGVKPNSATLVSVISSCANLAA--LEHGELIHSHVKDVGLECDLSICTALVDMY 566
Query: 196 AKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT 255
KCG L A +F+ M ER+V++W +I G G + AL LF MM+ VKPN +TF
Sbjct: 567 MKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFL 626
Query: 256 GVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRL 315
+L+AC H GLVD+GR+ F + EEY LEP ++HY CMVDL GK+G L+EA +V+ M +
Sbjct: 627 AILSACCHAGLVDKGRELFTRM-EEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPI 685
Query: 316 EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAE 375
EP+ IWG+ L ACK H F+M RV K+A PEND G + L+ + Y EKW E
Sbjct: 686 EPDGGIWGTLLGACKMHDNFEMGLRVAKKAF-ASDPEND-GYYILMSNSYGSAEKWNEIE 743
Query: 376 RVRKLMLNQNVRKARGSSVI 395
++R +M N V K+ G S I
Sbjct: 744 KLRDMMKNHGVEKSIGWSTI 763
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 125/254 (49%), Gaps = 16/254 (6%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI---SN 141
++++ Y++ G+V +A F+ MP R+V +W+A+I+ + G GL M+ +
Sbjct: 149 SSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGD 208
Query: 142 EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFL 201
G P+ T+ + L C LG L +G HGF VK + + L MY KC
Sbjct: 209 GGARPNSRTMESGLEACGVLGE--LSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDST 266
Query: 202 KYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261
+ A ++F + E++++SWT+LI G++E A+ LF M+ +G++P+E V+ +C
Sbjct: 267 EDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDE-----VVISC 321
Query: 262 VHTGLVDE----GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEP 317
+ GL ++ G K F + + ++ ++ K ++ A V R + +
Sbjct: 322 LLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLH-QR 380
Query: 318 NVIIWGSFLAA-CK 330
+ W S + A CK
Sbjct: 381 DTDSWSSMVVAYCK 394
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 3/159 (1%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
+++ Y+K + +AR F +P +++ SW+++I AY AG + ++LF M GL
Sbjct: 254 SSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGM-EESGL 312
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
PD++ I +L+G + V GK+ H IV+ + + I L+ MYAKC + A
Sbjct: 313 QPDEVVISCLLAGLGNDAKV--RGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIA 370
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQ 243
VF ++ +R+ SW++++ G L L+ MQ
Sbjct: 371 ATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQ 409
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 84/161 (52%), Gaps = 10/161 (6%)
Query: 108 PLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL 167
P + W++++ + A + L R M ++ G P + T V S + LG+ L
Sbjct: 68 PCPDAFLWNSLLRSRHRASDFASTLSAHRRMRAS-GARPSRFTAPLVASAAAELGA--LP 124
Query: 168 MGKSAHGFIVKN---EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALIC 224
+G + H + V+ E + + +A+ LV MYA+CG ++ A+ +F+ M ER+V++WTA+I
Sbjct: 125 VGAAVHAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVIS 184
Query: 225 GSAHRGYSEDALS-LFEMMQAT---GVKPNEMTFTGVLTAC 261
G G + LS L M+++ G +PN T L AC
Sbjct: 185 GCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEAC 225
>gi|326491225|dbj|BAK05712.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 538
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 127/322 (39%), Positives = 193/322 (59%), Gaps = 11/322 (3%)
Query: 80 NAVTWNTMIKGYSKSGNVCEARDFFERM-PLRNVASWSAMIAAYLNAGAYDPGLKLFREM 138
+ V N ++ Y+K G+ A F M P +N+ +W+ MI+A+ AG L+LFREM
Sbjct: 198 DVVACNALVDMYAKCGDSAAALRCFRTMVPTKNLVTWNTMISAHARAGELQEALELFREM 257
Query: 139 ISNEGLT----PDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI-ATILVD 193
+ +G T PD T AVL C+ LG+ L G+ H +IV+ + + L+D
Sbjct: 258 LQQQGCTSSPLPDDATFVAVLGACARLGA--LDAGRWVHAYIVRTGRDAAAGVVGNALID 315
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
MYAKCG ++ A VF+ M R+V ++T++I G A G E+AL+LF M+ V+PNE+T
Sbjct: 316 MYAKCGAVEQAAEVFDAMTRRDVYTYTSMISGLAMHGRGEEALALFGDMRQARVRPNEVT 375
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
F GVL+AC H G +++G ++F + E + + P I+HYGC+VD+ G+AG L+EA E++ M
Sbjct: 376 FLGVLSACCHAGNIEDGLRHFDAMAELHGVTPGIEHYGCVVDMLGRAGRLDEAEELVSVM 435
Query: 314 RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEG 373
+ P+ IIWGS LAAC+ H D AERV++ RM + E+D G + L+ ++Y +
Sbjct: 436 PIRPDAIIWGSLLAACRAHGHVDRAERVMR---RMAEDEDDAGDYVLMSNMYAQEGRHGK 492
Query: 374 AERVRKLMLNQNVRKARGSSVI 395
A +VR+ M V K G S+I
Sbjct: 493 AVQVRRQMRRGKVDKVPGCSLI 514
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 133/323 (41%), Gaps = 44/323 (13%)
Query: 3 LFSQMHRQSVPSDSFSILHILK--SCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
L + + R P D+ ++ +LK + T LH+H KLG H H
Sbjct: 43 LAASLLRHGAPHDAGALRAVLKRLAATASAPCEAAPALHAHSAKLGLYRH--------HR 94
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERM---PLRNVASWSA 117
V + ++ Y G A D F P +V SW+A
Sbjct: 95 GV---------------------RDALVALYLACGRRGVASDLFAGAGGGPAPDVVSWTA 133
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
M+ + G + +LF M + + + A + + G+ L++ + H ++
Sbjct: 134 MVTWHARLGLFREAAELFLAMADDGAVV--VDAVAAAAAFAACAGAGELVLAREVHRRVL 191
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELM-EERNVISWTALICGSAHRGYSEDAL 236
+ L+ LVDMYAKCG AL F M +N+++W +I A G ++AL
Sbjct: 192 EAGVALDVVACNALVDMYAKCGDSAAALRCFRTMVPTKNLVTWNTMISAHARAGELQEAL 251
Query: 237 SLF-EMMQATGVK----PNEMTFTGVLTACVHTGLVDEGR-KYFKMIDEEYDLEPRIQHY 290
LF EM+Q G P++ TF VL AC G +D GR + ++ D +
Sbjct: 252 ELFREMLQQQGCTSSPLPDDATFVAVLGACARLGALDAGRWVHAYIVRTGRDAAAGVVG- 310
Query: 291 GCMVDLFGKAGFLEEAYEVIRTM 313
++D++ K G +E+A EV M
Sbjct: 311 NALIDMYAKCGAVEQAAEVFDAM 333
>gi|147784564|emb|CAN70487.1| hypothetical protein VITISV_008663 [Vitis vinifera]
Length = 1302
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 140/437 (32%), Positives = 220/437 (50%), Gaps = 50/437 (11%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV 63
+ +M R +D+F+ +LK+ + ++ + LH +K GF H +V T+LL Y
Sbjct: 846 YVEMKRVGFHADNFTFPVLLKAASSLSSCCIGFALHGQAMKTGFSGHCFVGTALLDMY-- 903
Query: 64 TSFGF----------------------------------ARKLFDELPERNAVTWNTMIK 89
+FG A KLFD +P ++ ++N MI
Sbjct: 904 XAFGAIDHATKVFEEMGVKDVVVWNSMLAAYASXGQMDNAMKLFDNMPLKDLASFNIMIS 963
Query: 90 GYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLT---- 145
GY+K G AR F+R+ +++ SW++MI A N G LF M +
Sbjct: 964 GYAKIGRKAAARSIFDRIHAKDIVSWNSMILACTNVGDMGNARNLFDVMPKKNAVDLFDE 1023
Query: 146 -------PDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198
D +T+ VLS C+HLG +G G H + + + +AT L+DMYAKC
Sbjct: 1024 MKAGNHEADHLTVALVLSACAHLGWLG--KGTEMHVYAQDHRLASSPHVATSLIDMYAKC 1081
Query: 199 GFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL 258
G ++ +L VF + +++ W A+I G A GY A+ L + M+ G++P+E+TF G+L
Sbjct: 1082 GTIQRSLEVFYKSQVKDIYCWNAIISGLALHGYGHAAVKLLDKMRDNGIRPDEITFIGLL 1141
Query: 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPN 318
+AC H LV EG + F +++E+ L P+++HYGCMVDL G+AGFL+ A+++I+ M EP
Sbjct: 1142 SACSHGSLVQEGCRLFDCMEKEFGLPPKLEHYGCMVDLLGRAGFLDPAFQLIKAMPFEPG 1201
Query: 319 VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVR 378
I G+ L AC H+ + E+VI +D G F + +LY +W+ A R R
Sbjct: 1202 ESILGALLGACVIHQDLETGEKVIBLITSKAHHVSD-GEFMMFVNLYASCGQWKEANRWR 1260
Query: 379 KLMLNQNVRKARGSSVI 395
+ M + K G S I
Sbjct: 1261 ERMNESGIAKTAGGSTI 1277
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 3/128 (2%)
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
W+ +I ++ G D + + EM G D T +L S L S +G + HG
Sbjct: 826 WNRVIKRRVSQGNPDQAILAYVEM-KRVGFHADNFTFPVLLKAASSLSSC--CIGFALHG 882
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
+K + + + T L+DMY G + +A VFE M ++V+ W +++ A G ++
Sbjct: 883 QAMKTGFSGHCFVGTALLDMYXAFGAIDHATKVFEEMGVKDVVVWNSMLAAYASXGQMDN 942
Query: 235 ALSLFEMM 242
A+ LF+ M
Sbjct: 943 AMKLFDNM 950
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/280 (21%), Positives = 107/280 (38%), Gaps = 72/280 (25%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF +M + +D ++ +L +C H L +H + S +VATSL
Sbjct: 1018 VDLFDEMKAGNHEADHLTVALVLSACAHLGWLGKGTEMHVYAQDHRLASSPHVATSL--- 1074
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
I Y+K G + + + F + ++++ W+A+I+
Sbjct: 1075 ---------------------------IDMYAKCGTIQRSLEVFYKSQVKDIYCWNAIIS 1107
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF-IVKN 179
G +KL +M N G+ PD++T +LS CSH G L+ + F ++
Sbjct: 1108 GLALHGYGHAAVKLLDKMRDN-GIRPDEITFIGLLSACSH----GSLVQEGCRLFDCMEK 1162
Query: 180 EWELNEQIA--TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
E+ L ++ +VD+ + GFL A
Sbjct: 1163 EFGLPPKLEHYGCMVDLLGRAGFLDPA--------------------------------- 1189
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI 277
F++++A +P E +L ACV ++ G K +I
Sbjct: 1190 -FQLIKAMPFEPGESILGALLGACVIHQDLETGEKVIBLI 1228
>gi|116310106|emb|CAH67125.1| H0315E07.3 [Oryza sativa Indica Group]
gi|222628896|gb|EEE61028.1| hypothetical protein OsJ_14863 [Oryza sativa Japonica Group]
Length = 655
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 117/327 (35%), Positives = 195/327 (59%), Gaps = 9/327 (2%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A KLF E+P+R+ ++WN +++GY + G++ A +F R P ++ SW+ +I+ Y + GA
Sbjct: 301 ALKLFSEMPDRDQISWNAILQGYVQQGDMDSANAWFRRAPNKDAISWNTLISGYKDEGA- 359
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L L EMI GL PDQ T+ V+S C+ L S+G GK H + +K +E + +
Sbjct: 360 ---LSLLSEMIRG-GLKPDQATLSVVISICASLVSLGC--GKMVHLWAIKTGFEHDALVM 413
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
+ L+ MY+KCG + A VFEL+ +R+ ++W A+I A+ G +++AL +F+MM G +
Sbjct: 414 SSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFR 473
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+ TF +L+AC H G + EG +F+ + E+++L PR HY CMVDL G++GF+ +AY+
Sbjct: 474 PDHATFLSILSACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYSCMVDLLGRSGFIHQAYD 533
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
R + + W + + C H + + E + + L+ +P +DGG++TL+ ++Y
Sbjct: 534 FTRRIPSDHRTTAWETLFSVCNSHGEIQLGEIIARNVLK-ARP-SDGGMYTLLSNIYAAK 591
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
E W A VR M + ++K G S I
Sbjct: 592 EMWSSAASVRGFMKERGLKKETGCSWI 618
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 130/285 (45%), Gaps = 37/285 (12%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
ARK+FD +P RN+V+W ++ GY++ G V EAR+ F R+P RNV SW+AM++ Y G
Sbjct: 84 ARKVFDAMPVRNSVSWAALLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMV 143
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE--- 185
+LF M + ++ M G + K H V+ EL +
Sbjct: 144 KRARELFDMMPWRDDVSWLTMISGYI---------------KRKH---VREARELFDSMP 185
Query: 186 ----QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ L+ Y + G+++ A ++F M+ RN +SW +I G A G A LF+
Sbjct: 186 SPPTSVCNALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDE 245
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR-IQHYGCMVDLFGKA 300
M V ++ T ++ + G VD K FK D+ R + M+D F +
Sbjct: 246 MPEKDV----LSRTAIMRGYLQNGSVDAAWKVFK------DMPHRDTVAWNTMMDGFVRN 295
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQA 345
L++A ++ M + + I W + L + D A ++A
Sbjct: 296 DRLDDALKLFSEMP-DRDQISWNAILQGYVQQGDMDSANAWFRRA 339
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/285 (20%), Positives = 114/285 (40%), Gaps = 32/285 (11%)
Query: 104 FERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSG---CSH 160
F+ M RNV +W+ M++ + K+F M + ++ A+L+G C
Sbjct: 57 FDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMP-----VRNSVSWAALLTGYARCGR 111
Query: 161 LGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWT 220
+ L + +V W +V YA+ G +K A +F++M R+ +SW
Sbjct: 112 VAEARELFNRIPDRNVVS--W-------NAMVSGYARNGMVKRARELFDMMPWRDDVSWL 162
Query: 221 ALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE 280
+I G R + +A LF+ M + P +L+ V G + F +
Sbjct: 163 TMISGYIKRKHVREARELFDSMPS----PPTSVCNALLSGYVELGYMRAAEVLFGQMQTR 218
Query: 281 YDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAER 340
+ + M+ + +AG + A + M E +V+ + + ++ D A +
Sbjct: 219 NPVS-----WNVMITGYARAGSMGIAQRLFDEMP-EKDVLSRTAIMRGYLQNGSVDAAWK 272
Query: 341 VIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQN 385
V K P D + + D + N++ + A ++ M +++
Sbjct: 273 VFKDM-----PHRDTVAWNTMMDGFVRNDRLDDALKLFSEMPDRD 312
>gi|225435652|ref|XP_002283361.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36730
[Vitis vinifera]
Length = 461
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 134/394 (34%), Positives = 224/394 (56%), Gaps = 36/394 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LFSQM R + D+F+ ++K+C + +HS I+K GF S YV
Sbjct: 85 VKLFSQMQRVGLKPDNFTYPFVVKACGRSLVVGAGGAMHSIIVKAGFDSDRYVG------ 138
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
NT+++ Y+ V AR F M +R+V SWS+MIA
Sbjct: 139 ------------------------NTLLRMYANLNAVGLARRVFNEMTVRDVVSWSSMIA 174
Query: 121 AYLNAGAYDPGLKLFREM-ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y+ L +FR M ++NE P+ +T+ ++LS C+ L ++G+ G+S H +I+ N
Sbjct: 175 GYVACNCQADALMVFRHMMLANE--KPNSVTLVSLLSACTRLLNIGV--GESIHSYIIVN 230
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
L+ + T +++MY+KCG ++ AL VF + E+N+ SWT +I G A + EDA+SLF
Sbjct: 231 CIGLDVALGTAILEMYSKCGHIEKALKVFNSLTEKNLQSWTIMISGLADHSHGEDAISLF 290
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M+ TG++P+ M+F+ +L+AC H GLVDEG+ +F + + Y++ P ++HYGCMVD+F +
Sbjct: 291 TQMEQTGLQPDSMSFSEILSACSHLGLVDEGQTFFSQMVKIYNIRPTMEHYGCMVDMFAR 350
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG +EEAYE+I+ M +EPN +I SF+ AC+ + + +++ L ++P+ G +
Sbjct: 351 AGMIEEAYEIIKNMPMEPNSVILRSFIGACRNDGRVFGFDENLRRLLLEIEPDL-GANYV 409
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
L + +++ W A +R M + ++K G S
Sbjct: 410 LASGVSSLSGCWNEAADLRVSMKEKGLKKVPGWS 443
Score = 41.2 bits (95), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 22/148 (14%)
Query: 173 HGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVI-SWTALICGSAHRGY 231
H I+K + N + + + + +++A +VF+ + R I +W ++I
Sbjct: 22 HSLILKTAKDHNPDLISQFIFSISSVS-IEFARLVFDRLPIRAPIFAWNSIIRAYTKSSV 80
Query: 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG 291
+A+ LF MQ G+KP+ T+ V+ AC + +V G G
Sbjct: 81 PIEAVKLFSQMQRVGLKPDNFTYPFVVKACGRSLVVGAG--------------------G 120
Query: 292 CMVDLFGKAGFLEEAYEVIRTMRLEPNV 319
M + KAGF + Y +R+ N+
Sbjct: 121 AMHSIIVKAGFDSDRYVGNTLLRMYANL 148
>gi|255567729|ref|XP_002524843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535903|gb|EEF37563.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 524
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 143/401 (35%), Positives = 223/401 (55%), Gaps = 10/401 (2%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF+ M P +S + ++K+ T + ++ LH+ ++K G + +V TSLL Y
Sbjct: 73 LFTLMLAHQTPPNSHTFPSLIKAAT-LSFPSIGTSLHTQVIKRGVLCDPFVQTSLLAFYS 131
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+ A K+FD + V +N M+ Y+K+ ++ A F+RM R+V SW+ +I+
Sbjct: 132 QIGCLYNAHKVFDGILHPWIVEYNAMLDAYAKNNDMGSAILLFKRMLKRDVVSWTTVISG 191
Query: 122 YLNAGAYDPGLKLFREMISNEGLT-----PDQMTIGAVLSGCSHLGSVG-LLMGKSAHGF 175
+ +G + + FR MI++E ++ P++ T +VLS C+ L G L +GK HG
Sbjct: 192 FSRSGLFREAINFFRVMIAHEDVSLGLVKPNEATYVSVLSSCASLDEGGSLFLGKQMHGS 251
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
I++NE L I T L+D Y K G L A+ VF M + + SW A+I A+ G + A
Sbjct: 252 IIRNEVVLTVFIGTALIDFYGKVGCLNSAIRVFNSMTIKQICSWNAMISCLANNGREKQA 311
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
L +FEMM+ G PNE+TF VLTAC LV G + F+ + +Y ++P ++HYGC+VD
Sbjct: 312 LDMFEMMEEKGPSPNEVTFVVVLTACTRAKLVQFGMRLFQSMWSDYSVKPIMEHYGCVVD 371
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
L G+AG L EA E+IR+M EP+ + G+ L ACK H +A V + LR+ +P + G
Sbjct: 372 LLGRAGLLREASEIIRSMPFEPDASVLGALLGACKIHGANKLANEVGGRLLRL-QPLHCG 430
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
F L+ ++ EKW A VRK M+ + K S+I+
Sbjct: 431 Q-FVLLSNINAGLEKWSVAADVRKAMVEAGISKVPAYSLIN 470
>gi|334184919|ref|NP_182060.2| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
gi|218546767|sp|O22137.2|PP202_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g45350, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 4; Flags: Precursor
gi|330255448|gb|AEC10542.1| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
Length = 613
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 119/327 (36%), Positives = 196/327 (59%), Gaps = 4/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A+ LFD +P R+ VTW TMI GY+K G V A+ F++MP R+V ++++M+A Y+ +
Sbjct: 271 AKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYH 330
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L++F +M L PD T+ VL + LG + + H +IV+ ++ L ++
Sbjct: 331 MEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAI--DMHLYIVEKQFYLGGKLG 388
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+DMY+KCG +++A++VFE +E +++ W A+I G A G E A + ++ +K
Sbjct: 389 VALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLK 448
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+++TF GVL AC H+GLV EG F+++ ++ +EPR+QHYGCMVD+ ++G +E A
Sbjct: 449 PDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKN 508
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+I M +EPN +IW +FL AC HK+F+ E V K + ++ + + L+ ++Y
Sbjct: 509 LIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLI--LQAGYNPSSYVLLSNMYASF 566
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
W+ RVR +M + + K G S I
Sbjct: 567 GMWKDVRRVRTMMKERKIEKIPGCSWI 593
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 175/349 (50%), Gaps = 21/349 (6%)
Query: 12 VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFAR 70
V D FS+ +LK+C+ + +H + K G S +++ L+ Y+ G +R
Sbjct: 117 VSVDKFSLSLVLKACSRLGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSR 176
Query: 71 KLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP--LRNVASWSAMIAAYLN-AGA 127
++FD +P+R++V++N+MI GY K G + AR+ F+ MP ++N+ SW++MI+ Y +
Sbjct: 177 QMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDG 236
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
D KLF +M + ++ + M G V G + GL + W
Sbjct: 237 VDIASKLFADMPEKDLISWNSMIDGYVKHGRIE-DAKGLFDVMPRRDVVT---W------ 286
Query: 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF-EMMQATG 246
++D YAK GF+ +A +F+ M R+V+++ +++ G Y +AL +F +M + +
Sbjct: 287 -ATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESH 345
Query: 247 VKPNEMTFTGVLTACVHTGLVDEG-RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305
+ P++ T VL A G + + + ++++++ L ++ ++D++ K G ++
Sbjct: 346 LLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLG--VALIDMYSKCGSIQH 403
Query: 306 AYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-VKPEN 353
A V + ++ W + + H + A ++ Q R+ +KP++
Sbjct: 404 AMLVFEGIE-NKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDD 451
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 105/273 (38%), Gaps = 47/273 (17%)
Query: 154 VLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA--------TILVDMYAKCGFLKYAL 205
VL C V + G+ I+KN L +I L D +A+C F +Y +
Sbjct: 18 VLGSCKTSDDVNQIHGRLIKTGIIKNS-NLTTRIVLAFASSRRPYLAD-FARCVFHEYHV 75
Query: 206 MVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG 265
F E + W A+I +H AL L +M GV ++ + + VL AC G
Sbjct: 76 CSFSFGEVEDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLG 135
Query: 266 LVDEGRK-----------------------YFK-----MIDEEYDLEPRIQ--HYGCMVD 295
V G + Y K + + +D P+ Y M+D
Sbjct: 136 FVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMID 195
Query: 296 LFGKAGFLEEAYEVIRTMRLE-PNVIIWGSFLAA-CKEHKQFDMAERVIKQALRMVKPEN 353
+ K G + A E+ M +E N+I W S ++ + D+A ++ PE
Sbjct: 196 GYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADM-----PEK 250
Query: 354 DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386
D + + D Y + + E A+ + +M ++V
Sbjct: 251 DLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDV 283
>gi|222629009|gb|EEE61141.1| hypothetical protein OsJ_15084 [Oryza sativa Japonica Group]
Length = 897
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 132/320 (41%), Positives = 190/320 (59%), Gaps = 6/320 (1%)
Query: 76 LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF 135
L N+ N +I Y + GN AR F + ++V +WSA+I++Y + G L L+
Sbjct: 450 LAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLY 509
Query: 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY 195
+M++ EG+ P+ T+ +V+S C++L + L G+ H + E + I T LVDMY
Sbjct: 510 DQMLT-EGVKPNSATLVSVISSCANLAA--LEHGELIHSHVKDVGLECDLSICTALVDMY 566
Query: 196 AKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT 255
KCG L A +F+ M ER+V++W +I G G + AL LF MM+ VKPN +TF
Sbjct: 567 MKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFL 626
Query: 256 GVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRL 315
+L+AC H GLVD+GR+ F + EEY LEP ++HY CMVDL GK+G L+EA +V+ M +
Sbjct: 627 AILSACCHAGLVDKGRELFTRM-EEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPI 685
Query: 316 EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAE 375
EP+ IWG+ L ACK H F+M RV K+A PEND G + L+ + Y EKW E
Sbjct: 686 EPDGGIWGTLLGACKMHDNFEMGLRVAKKAF-ASDPEND-GYYILMSNSYGSAEKWNEIE 743
Query: 376 RVRKLMLNQNVRKARGSSVI 395
++R +M N V K+ G S I
Sbjct: 744 KLRDMMKNHGVEKSIGWSTI 763
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 123/250 (49%), Gaps = 8/250 (3%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI---SN 141
++++ Y++ G+V +A F+ MP R+V +W+A+I+ + G GL M+ +
Sbjct: 149 SSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGD 208
Query: 142 EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFL 201
G P+ T+ + L C LG L +G HGF VK + + L MY KC
Sbjct: 209 GGARPNSRTMESGLEACGVLGE--LSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDST 266
Query: 202 KYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261
+ A ++F + E++++SWT+LI G++E A+ LF M+ +G++P+E+ + +L
Sbjct: 267 EDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGL 326
Query: 262 VHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVII 321
+ V G+ + I + + ++ ++ K ++ A V R + + +
Sbjct: 327 GNDAKVRGGKTFHAAIVRR-NFGDSVLIGNALISMYAKCKQVDIAATVFRMLH-QRDTDS 384
Query: 322 WGSFLAA-CK 330
W S + A CK
Sbjct: 385 WSSMVVAYCK 394
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 3/159 (1%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
+++ Y+K + +AR F +P +++ SW+++I AY AG + ++LF M GL
Sbjct: 254 SSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGM-EESGL 312
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
PD++ I +L+G + V GK+ H IV+ + + I L+ MYAKC + A
Sbjct: 313 QPDEVVISCLLAGLGNDAKV--RGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIA 370
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQ 243
VF ++ +R+ SW++++ G L L+ MQ
Sbjct: 371 ATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQ 409
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 84/161 (52%), Gaps = 10/161 (6%)
Query: 108 PLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL 167
P + W++++ + A + L R M ++ G P + T V S + LG+ L
Sbjct: 68 PCPDAFLWNSLLRSRHRASDFASTLSAHRRMRAS-GARPSRFTAPLVASAAAELGA--LP 124
Query: 168 MGKSAHGFIVKN---EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALIC 224
+G + H + V+ E + + +A+ LV MYA+CG ++ A+ +F+ M ER+V++WTA+I
Sbjct: 125 VGAAVHAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVIS 184
Query: 225 GSAHRGYSEDALS-LFEMMQAT---GVKPNEMTFTGVLTAC 261
G G + LS L M+++ G +PN T L AC
Sbjct: 185 GCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEAC 225
>gi|222625627|gb|EEE59759.1| hypothetical protein OsJ_12247 [Oryza sativa Japonica Group]
Length = 950
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 135/394 (34%), Positives = 224/394 (56%), Gaps = 7/394 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+SQM + +L +C +L +H+ LK+ ++V+V+++L+
Sbjct: 363 VSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDM 422
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A+ +F LP++N V WN++I GYS + + EA + F++MP RNVASW+++I
Sbjct: 423 YCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSII 482
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y + LK F M+++ G +P ++T +VL C+ L S L MGK H I+K
Sbjct: 483 SGYAQNRQFIDALKSFHAMLAS-GQSPGEITFSSVLLACASLCS--LEMGKMVHAKIIKL 539
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + + T L DMYAK G L + VF M +RN ++WTA+I G A G++E+++ LF
Sbjct: 540 GIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLF 599
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
E M + G+ PNE TF +L AC H+GLV+ YF+M+ + + P+ +HY CMVD+ +
Sbjct: 600 EDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMM-QACGISPKAKHYTCMVDVLAR 658
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG L EA +++ + + W + L+AC ++ +M ER K+ L+ + +N G +
Sbjct: 659 AGHLAEAEDLLLKIESKSEANSWAALLSACNIYRNKEMGERAAKR-LQELDKDNTAG-YV 716
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
L+ ++Y KW+ A +R LM N++K G S
Sbjct: 717 LLSNMYASCGKWKDAAEMRILMKGINLKKDGGCS 750
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 151/306 (49%), Gaps = 33/306 (10%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR+LFD +PER+ V++ TM+ K G+V +A + + + PL +V ++AMIA ++
Sbjct: 167 ARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELP 226
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGS-------VGLLM------------- 168
L +F EM+S G++P+++T+ +V+ C G VGL M
Sbjct: 227 KDALGVFHEMLSC-GVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLLDKNLGVRN 285
Query: 169 ---------GKSAHGFIVKNEWELNEQIA-TILVDMYAKCGFLKYALMVFELMEERNVIS 218
G + + +E E+ + ++ T L+D+YA+ G L+ A V + M ERN +S
Sbjct: 286 SLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPERNEVS 345
Query: 219 WTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMID 278
W L+ +G +++A+SL+ M A G +PN F+ VL AC + GRK
Sbjct: 346 WGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQT- 404
Query: 279 EEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
+ + ++D++ K L +A + ++ + N++ W S ++ + + A
Sbjct: 405 LKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLP-QKNIVCWNSLISGYSNNSKMVEA 463
Query: 339 ERVIKQ 344
E + K+
Sbjct: 464 EELFKK 469
>gi|2583119|gb|AAB82628.1| hypothetical protein [Arabidopsis thaliana]
Length = 606
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 119/327 (36%), Positives = 196/327 (59%), Gaps = 4/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A+ LFD +P R+ VTW TMI GY+K G V A+ F++MP R+V ++++M+A Y+ +
Sbjct: 264 AKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYH 323
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L++F +M L PD T+ VL + LG + + H +IV+ ++ L ++
Sbjct: 324 MEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAI--DMHLYIVEKQFYLGGKLG 381
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+DMY+KCG +++A++VFE +E +++ W A+I G A G E A + ++ +K
Sbjct: 382 VALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLK 441
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+++TF GVL AC H+GLV EG F+++ ++ +EPR+QHYGCMVD+ ++G +E A
Sbjct: 442 PDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKN 501
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+I M +EPN +IW +FL AC HK+F+ E V K + ++ + + L+ ++Y
Sbjct: 502 LIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLI--LQAGYNPSSYVLLSNMYASF 559
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
W+ RVR +M + + K G S I
Sbjct: 560 GMWKDVRRVRTMMKERKIEKIPGCSWI 586
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 175/349 (50%), Gaps = 21/349 (6%)
Query: 12 VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFAR 70
V D FS+ +LK+C+ + +H + K G S +++ L+ Y+ G +R
Sbjct: 110 VSVDKFSLSLVLKACSRLGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSR 169
Query: 71 KLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP--LRNVASWSAMIAAYLN-AGA 127
++FD +P+R++V++N+MI GY K G + AR+ F+ MP ++N+ SW++MI+ Y +
Sbjct: 170 QMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDG 229
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
D KLF +M + ++ + M G V G + GL + W
Sbjct: 230 VDIASKLFADMPEKDLISWNSMIDGYVKHGRIE-DAKGLFDVMPRRDVVT---W------ 279
Query: 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF-EMMQATG 246
++D YAK GF+ +A +F+ M R+V+++ +++ G Y +AL +F +M + +
Sbjct: 280 -ATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESH 338
Query: 247 VKPNEMTFTGVLTACVHTGLVDEG-RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305
+ P++ T VL A G + + + ++++++ L ++ ++D++ K G ++
Sbjct: 339 LLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLG--VALIDMYSKCGSIQH 396
Query: 306 AYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-VKPEN 353
A V + ++ W + + H + A ++ Q R+ +KP++
Sbjct: 397 AMLVFEGIE-NKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDD 444
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 105/273 (38%), Gaps = 47/273 (17%)
Query: 154 VLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA--------TILVDMYAKCGFLKYAL 205
VL C V + G+ I+KN L +I L D +A+C F +Y +
Sbjct: 11 VLGSCKTSDDVNQIHGRLIKTGIIKNS-NLTTRIVLAFASSRRPYLAD-FARCVFHEYHV 68
Query: 206 MVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG 265
F E + W A+I +H AL L +M GV ++ + + VL AC G
Sbjct: 69 CSFSFGEVEDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLG 128
Query: 266 LVDEGRK-----------------------YFK-----MIDEEYDLEPRIQ--HYGCMVD 295
V G + Y K + + +D P+ Y M+D
Sbjct: 129 FVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMID 188
Query: 296 LFGKAGFLEEAYEVIRTMRLE-PNVIIWGSFLAA-CKEHKQFDMAERVIKQALRMVKPEN 353
+ K G + A E+ M +E N+I W S ++ + D+A ++ PE
Sbjct: 189 GYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADM-----PEK 243
Query: 354 DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386
D + + D Y + + E A+ + +M ++V
Sbjct: 244 DLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDV 276
>gi|242083462|ref|XP_002442156.1| hypothetical protein SORBIDRAFT_08g015260 [Sorghum bicolor]
gi|241942849|gb|EES15994.1| hypothetical protein SORBIDRAFT_08g015260 [Sorghum bicolor]
Length = 557
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 132/426 (30%), Positives = 221/426 (51%), Gaps = 38/426 (8%)
Query: 1 MQLFSQMHRQSVP-SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+ LF M R+ VP ++F+ +++ C+ + +H + G +V +L+
Sbjct: 101 LALFRLMLRRGVPRPNAFTASSVVRCCSALRAVREGIQVHGFLFSAGLGRASHVGAALVD 160
Query: 60 EY-VVTSFGFARKLFDELP-------------------------------ERNAVTWNTM 87
Y + AR++FDE+P ER+ ++WNT+
Sbjct: 161 MYGSLGRVADARRVFDEMPSTNVVLGNTMVACYVRAGDVEAGRDVFDRMAERDPISWNTL 220
Query: 88 IKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD 147
+ GY + G ARD FE MP RNV SW+ +IAA G + +++F M PD
Sbjct: 221 MMGYLRQGEAGVARDLFEEMPDRNVNSWNMVIAACSQEGLWADAVEVFNRMRLAR-FQPD 279
Query: 148 QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMV 207
T+ ++S C+ LGS L + HG + K E+N + L+DMYAKCG + A ++
Sbjct: 280 PATMAVLMSACAQLGS--LSIASQVHGILRKGCVEMNFHVLNSLIDMYAKCGSVSQAHLL 337
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
F ++ +S+ +IC A G+ DAL +F+ M G++P+ +TF GVL+AC H GLV
Sbjct: 338 FVETRLKDTVSYNVMICALAQHGHGRDALQIFDEMSEEGLQPDAVTFLGVLSACAHAGLV 397
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
+G+ YF+ + Y +E HY CMVDL+G+AG +EEAY++ R M ++P+ +WG+ +
Sbjct: 398 HDGKFYFESMRTNYAIEQSPDHYACMVDLYGRAGLIEEAYQLARAMPVKPHAGVWGALIN 457
Query: 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVR 387
AC++H ++ +V + L ++P N G + L+ + ++W+ E V + M + +
Sbjct: 458 ACRKHCNVEVG-KVAARELIAIEPGNP-GTYVLLANTLARGQQWDFVETVWQSMRGKGIE 515
Query: 388 KARGSS 393
K G S
Sbjct: 516 KTAGCS 521
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 19/239 (7%)
Query: 111 NVASWSAMIAAYL-----NAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVG 165
NV W+A IAAY + A + L LFR M+ P+ T +V+ CS L +V
Sbjct: 75 NVYLWTATIAAYARHASSSLSAAEGALALFRLMLRRGVPRPNAFTASSVVRCCSALRAV- 133
Query: 166 LLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICG 225
G HGF+ + LVDMY G + A VF+ M NV+ ++
Sbjct: 134 -REGIQVHGFLFSAGLGRASHVGAALVDMYGSLGRVADARRVFDEMPSTNVVLGNTMVAC 192
Query: 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP 285
G E +F+ M + + +++ ++ + G R F+ + +
Sbjct: 193 YVRAGDVEAGRDVFDRM----AERDPISWNTLMMGYLRQGEAGVARDLFEEMPDR----- 243
Query: 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTMRL---EPNVIIWGSFLAACKEHKQFDMAERV 341
+ + ++ + G +A EV MRL +P+ ++AC + +A +V
Sbjct: 244 NVNSWNMVIAACSQEGLWADAVEVFNRMRLARFQPDPATMAVLMSACAQLGSLSIASQV 302
>gi|108710611|gb|ABF98406.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 787
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 135/394 (34%), Positives = 224/394 (56%), Gaps = 7/394 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+SQM + +L +C +L +H+ LK+ ++V+V+++L+
Sbjct: 363 VSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDM 422
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A+ +F LP++N V WN++I GYS + + EA + F++MP RNVASW+++I
Sbjct: 423 YCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSII 482
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y + LK F M+++ G +P ++T +VL C+ L S L MGK H I+K
Sbjct: 483 SGYAQNRQFIDALKSFHAMLAS-GQSPGEITFSSVLLACASLCS--LEMGKMVHAKIIKL 539
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + + T L DMYAK G L + VF M +RN ++WTA+I G A G++E+++ LF
Sbjct: 540 GIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLF 599
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
E M + G+ PNE TF +L AC H+GLV+ YF+M+ + + P+ +HY CMVD+ +
Sbjct: 600 EDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMM-QACGISPKAKHYTCMVDVLAR 658
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG L EA +++ + + W + L+AC ++ +M ER K+ L+ + +N G +
Sbjct: 659 AGHLAEAEDLLLKIESKSEANSWAALLSACNIYRNKEMGERAAKR-LQELDKDNTAG-YV 716
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
L+ ++Y KW+ A +R LM N++K G S
Sbjct: 717 LLSNMYASCGKWKDAAEMRILMKGINLKKDGGCS 750
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 151/306 (49%), Gaps = 33/306 (10%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR+LFD +PER+ V++ TM+ K G+V +A + + + PL +V ++AMIA ++
Sbjct: 167 ARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELP 226
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGS-------VGLLM------------- 168
L +F EM+S G++P+++T+ +V+ C G VGL M
Sbjct: 227 KDALGVFHEMLSC-GVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLLDKNLGVRN 285
Query: 169 ---------GKSAHGFIVKNEWELNEQIA-TILVDMYAKCGFLKYALMVFELMEERNVIS 218
G + + +E E+ + ++ T L+D+YA+ G L+ A V + M ERN +S
Sbjct: 286 SLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPERNEVS 345
Query: 219 WTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMID 278
W L+ +G +++A+SL+ M A G +PN F+ VL AC + GRK
Sbjct: 346 WGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQT- 404
Query: 279 EEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
+ + ++D++ K L +A + ++ + N++ W S ++ + + A
Sbjct: 405 LKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLP-QKNIVCWNSLISGYSNNSKMVEA 463
Query: 339 ERVIKQ 344
E + K+
Sbjct: 464 EELFKK 469
>gi|215741011|dbj|BAG97506.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 483
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 121/327 (37%), Positives = 199/327 (60%), Gaps = 5/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR+LFD++P+R+ V WN+MI GY++ G + EAR FE MP RNV SWS +I Y+ G
Sbjct: 126 ARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEP 185
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ L+ F+ M+ G+ PD++ ++ C+ LG+ L G+ H ++ K + + +
Sbjct: 186 NEALEFFQRMLRC-GIKPDRVAAVGAVAACAQLGA--LEQGRWLHSYLEKKKVLFDVVVQ 242
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
T L+DMY KCG L A ++FE M +++V++W +I G GY DA+ LF M+
Sbjct: 243 TALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAP 302
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
++++ VLT+C H GLV EG F ++++ LEP+++HYG ++DL G+AG +++A
Sbjct: 303 MDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARN 362
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
I TM +EP +WGS LA+C+ H+ ++AE +++ + +D GV+ L+ ++Y
Sbjct: 363 TIETMPMEPTPELWGSLLASCRSHRCVELAELSVERLASL--GADDSGVYVLLSNIYADE 420
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
W+ R+RKLM + ++K G SVI
Sbjct: 421 GMWDDVFRIRKLMSAEGMKKNIGRSVI 447
>gi|242042081|ref|XP_002468435.1| hypothetical protein SORBIDRAFT_01g045890 [Sorghum bicolor]
gi|241922289|gb|EER95433.1| hypothetical protein SORBIDRAFT_01g045890 [Sorghum bicolor]
Length = 506
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 146/408 (35%), Positives = 226/408 (55%), Gaps = 18/408 (4%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNL-TVIHHLHSHILKLGFIS----HVYVAT 55
++LF+ M R D+F+ +LKSC+ ++ + LH+ K G +S HV+V
Sbjct: 102 IELFTAMRRAGAAPDAFTFTFVLKSCSRCHSPGRLPSDLHAQAFKHGCLSARSEHVHVHN 161
Query: 56 SLLHEYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVAS 114
+LLH Y S A ++FDE+P R+ V+++ ++ + K+ + AR F++MP R+V S
Sbjct: 162 ALLHAYASRSAVDDAHRVFDEMPVRDVVSFSGLLTAHLKNNQLDSARMVFDQMPHRDVVS 221
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
W+AMI+AY A L LF M + PD++T+ +V+S C+ LG L G+
Sbjct: 222 WTAMISAYARASRPQDALALFDAM----PVQPDEVTMVSVVSACTALGD--LATGERLRL 275
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
++ N + + L+DMYAKCG L A +F+ M R++ SW LI A G E
Sbjct: 276 YVDSNGFGWMVSLRNALMDMYAKCGCLPEARELFDGMAIRSLASWNTLILAYASHGDEES 335
Query: 235 ALSLFEMMQA--TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE-EY-DLEPRIQHY 290
++LF M A VKP+ +T VLT H G V+EGR F + +Y +E ++HY
Sbjct: 336 TIALFHQMLAHDNSVKPDGVTLLAVLTMYAHKGCVEEGRTVFDAMQRGDYGKVELTVEHY 395
Query: 291 GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVK 350
GCMVDL +AG LEEAY++I M + N ++WG L AC+ H DMAE+ + Q LR++
Sbjct: 396 GCMVDLLSRAGHLEEAYKMIEQMSIPSNDVVWGVLLGACRMHGNIDMAEKAV-QKLRILN 454
Query: 351 PENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSL 398
P ++GG + L+ D+YT + A VR+ M +K G S +++
Sbjct: 455 P-HEGGYYILLIDMYTAAGRTAEAMEVRRTMNKTRAKKTTGWSCPTTV 501
>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
Length = 546
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 145/443 (32%), Positives = 228/443 (51%), Gaps = 52/443 (11%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF +M R D F+ ++K+C+ + H ++ G V+V TSL+
Sbjct: 108 VSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDL 167
Query: 61 Y--------------------VVT---------SFGF---ARKLFDELPERNAVTWNTMI 88
Y VV+ SF ARKLFDE+PE+NAV+WN +I
Sbjct: 168 YGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAII 227
Query: 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNE------ 142
GY K G++ AR F+ MP RNV S++ MI Y +G +F E +
Sbjct: 228 SGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSA 287
Query: 143 ---------GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE-QIATILV 192
+ PD+ + +++S CS +GS L + K ++ K+ +++ + L+
Sbjct: 288 LIFRVCAEWNVKPDEFIMVSLMSACSQMGS--LELAKWVDDYVRKSSIDVHRAHVIAALI 345
Query: 193 DMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEM 252
DM AKCG + A +FE M +R++IS+ +++ G + G A+SLF M G+ P+++
Sbjct: 346 DMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDV 405
Query: 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312
FT +LTAC GLVDEG YF+ + +Y + P HY CMVDL G+AG L+EAYE++++
Sbjct: 406 AFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKS 465
Query: 313 MRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWE 372
M +EP+ WG+ L ACK H ++ E V Q + +P+N G + L+ ++Y E+W
Sbjct: 466 MPVEPHAGAWGALLGACKLHCDIELGEVVADQLFEL-EPQNAGN-YVLLSNIYAAAEQWL 523
Query: 373 GAERVRKLMLNQNVRKARGSSVI 395
+R M + +RK G S I
Sbjct: 524 DVSLLRNKMRERGIRKIPGCSWI 546
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 93/383 (24%), Positives = 161/383 (42%), Gaps = 69/383 (18%)
Query: 18 SILHILKSCTHFNNLTVIHHLHSHILKLGF-ISHVYVATSLLHEYVVTSFGFARKLFDEL 76
SI +LK+CT + + +H+ I++ G H ++ L +++F + +F+ +
Sbjct: 27 SISTLLKACT---TTSTLEQVHARIIRKGLHQDHFLISQFLTLCNSLSNFSYTTSVFNGV 83
Query: 77 PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFR 136
+ V WNT IKGYS++ +V F RM +
Sbjct: 84 SSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDA------------------------ 119
Query: 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA 196
PD+ T +++ CS + G+ G + HG V+ + + T L+D+Y
Sbjct: 120 --------VPDKFTYPSLIKACSKV--CGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYG 169
Query: 197 KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTG 256
KCG + A VF+ M ERNV+SWTA+I G A +A LF+ M + N +++
Sbjct: 170 KCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMP----EKNAVSWNA 225
Query: 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG-------FLEEA--- 306
+++ V G + RK F + + + M+D + K+G EEA
Sbjct: 226 IISGYVKCGDLRSARKMFDEMPHR-----NVVSFTTMIDGYAKSGDMASARFVFEEAPER 280
Query: 307 ---------YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
+ V ++P+ I S ++AC + ++A + + +R K D
Sbjct: 281 DVVAWSALIFRVCAEWNVKPDEFIMVSLMSACSQMGSLELA-KWVDDYVR--KSSIDVHR 337
Query: 358 FTLICDLYTMNEKWEGAERVRKL 380
+I L MN K +R KL
Sbjct: 338 AHVIAALIDMNAKCGSMDRATKL 360
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 48/242 (19%), Positives = 93/242 (38%), Gaps = 22/242 (9%)
Query: 150 TIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFE 209
+I +L C+ ++ + H I++ + + + + + Y VF
Sbjct: 27 SISTLLKACTTTSTL-----EQVHARIIRKGLHQDHFLISQFLTLCNSLSNFSYTTSVFN 81
Query: 210 LMEERNVISWTALICGSAHRGYSED-----ALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
+ + + W I +GYSE+ +SLF M+ + P++ T+ ++ AC
Sbjct: 82 GVSSPSTVLWNTYI-----KGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKV 136
Query: 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324
V EG F + + ++DL+GK G + A +V M E NV+ W +
Sbjct: 137 CGVKEGVA-FHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMG-ERNVVSWTA 194
Query: 325 FLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384
+A A ++ + PE + + I Y A ++ M ++
Sbjct: 195 MIAGYASFSDLVEARKLFDEM-----PEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHR 249
Query: 385 NV 386
NV
Sbjct: 250 NV 251
>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 663
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 130/394 (32%), Positives = 214/394 (54%), Gaps = 36/394 (9%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+ +M P +++ ++K+C + L + +HSH++ G+ S +YV +L
Sbjct: 176 FYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAAL----- 230
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
I Y+K+ ++ A+ F+ MP R + +W+++I+ Y
Sbjct: 231 -------------------------IALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGY 265
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
G + LF M+ + G PD TI ++LS CS LG+ L G H + N ++
Sbjct: 266 DQNGLPQESIGLFHLMMES-GFQPDSATIVSLLSSCSQLGA--LDFGCWLHDYADGNGFD 322
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
LN + T L++MY +CG + A VF+ M+ERNV++WTA+I G GY A+ LF M
Sbjct: 323 LNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEM 382
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
+A G +PN +TF VL+AC H+GL+D+GR+ F + E Y L P ++H CMVD+FG+AG
Sbjct: 383 RAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGL 442
Query: 303 LEEAYEVIRT-MRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L +AY+ I+ + EP +W S L AC+ H+ FD+ +V + L V+PEN G + ++
Sbjct: 443 LNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLS-VEPENPGH-YVML 500
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y + + + E VR +M + ++K G S I
Sbjct: 501 SNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTI 534
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 149/327 (45%), Gaps = 52/327 (15%)
Query: 14 SDSFSILH--ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-----VTSF 66
+ S S +H +L+S NL +H+HI+ +S ++ + SLL + + S
Sbjct: 87 TQSHSPVHEALLRSGPRLRNL---QQVHAHII----VSGLHRSRSLLTKLISLVCTAGSI 139
Query: 67 GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAG 126
+AR+LF +P ++ +++++K SK G + F+ RM
Sbjct: 140 TYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRM------------------- 180
Query: 127 AYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ 186
LF G T +V+ C+ L + L +GK H ++ + +
Sbjct: 181 -------LF------SGAPQSNYTFTSVIKACADLSA--LRLGKEIHSHVMVCGYGSDMY 225
Query: 187 IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
+ L+ +YAK +K A VF+ M +R +I+W +LI G G ++++ LF +M +G
Sbjct: 226 VQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESG 285
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMID-EEYDLEPRIQHYGCMVDLFGKAGFLEE 305
+P+ T +L++C G +D G D +DL + +++++ + G + +
Sbjct: 286 FQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLG--TSLINMYTRCGNVSK 343
Query: 306 AYEVIRTMRLEPNVIIWGSFLAACKEH 332
A EV +M+ E NV+ W + ++ H
Sbjct: 344 AREVFDSMK-ERNVVTWTAMISGYGMH 369
>gi|62733531|gb|AAX95648.1| Tetratricopeptide repeat, putative [Oryza sativa Japonica Group]
Length = 888
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 135/394 (34%), Positives = 224/394 (56%), Gaps = 7/394 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+SQM + +L +C +L +H+ LK+ ++V+V+++L+
Sbjct: 363 VSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDM 422
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A+ +F LP++N V WN++I GYS + + EA + F++MP RNVASW+++I
Sbjct: 423 YCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSII 482
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y + LK F M+++ G +P ++T +VL C+ L S L MGK H I+K
Sbjct: 483 SGYAQNRQFIDALKSFHAMLAS-GQSPGEITFSSVLLACASLCS--LEMGKMVHAKIIKL 539
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + + T L DMYAK G L + VF M +RN ++WTA+I G A G++E+++ LF
Sbjct: 540 GIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLF 599
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
E M + G+ PNE TF +L AC H+GLV+ YF+M+ + + P+ +HY CMVD+ +
Sbjct: 600 EDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMM-QACGISPKAKHYTCMVDVLAR 658
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG L EA +++ + + W + L+AC ++ +M ER K+ L+ + +N G +
Sbjct: 659 AGHLAEAEDLLLKIESKSEANSWAALLSACNIYRNKEMGERAAKR-LQELDKDNTAG-YV 716
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
L+ ++Y KW+ A +R LM N++K G S
Sbjct: 717 LLSNMYASCGKWKDAAEMRILMKGINLKKDGGCS 750
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 151/306 (49%), Gaps = 33/306 (10%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR+LFD +PER+ V++ TM+ K G+V +A + + + PL +V ++AMIA ++
Sbjct: 167 ARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELP 226
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGS-------VGLLM------------- 168
L +F EM+S G++P+++T+ +V+ C G VGL M
Sbjct: 227 KDALGVFHEMLSC-GVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLLDKNLGVRN 285
Query: 169 ---------GKSAHGFIVKNEWELNEQIA-TILVDMYAKCGFLKYALMVFELMEERNVIS 218
G + + +E E+ + ++ T L+D+YA+ G L+ A V + M ERN +S
Sbjct: 286 SLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPERNEVS 345
Query: 219 WTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMID 278
W L+ +G +++A+SL+ M A G +PN F+ VL AC + GRK
Sbjct: 346 WGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQT- 404
Query: 279 EEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
+ + ++D++ K L +A + ++ + N++ W S ++ + + A
Sbjct: 405 LKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLP-QKNIVCWNSLISGYSNNSKMVEA 463
Query: 339 ERVIKQ 344
E + K+
Sbjct: 464 EELFKK 469
>gi|218192640|gb|EEC75067.1| hypothetical protein OsI_11193 [Oryza sativa Indica Group]
Length = 619
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 126/375 (33%), Positives = 218/375 (58%), Gaps = 11/375 (2%)
Query: 22 ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGF-ARKLFDELPERN 80
+LK+C +N+ I +HS ++KLG +S+ + T L Y+ A KLF + E +
Sbjct: 161 LLKACAKCSNIYAIMEIHSQLVKLGLLSNQRIVTHLFKLYIDHGRVMEACKLFWLMLEWS 220
Query: 81 AVTW--NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM 138
A + N M+ G+ K G + +A F+RMP++++ SW++MIA + +F ++
Sbjct: 221 AEPFYGNLMLMGFLKCGQIDKAYQIFKRMPVKDLVSWNSMIAGTARNSCLKDAMNIFSKL 280
Query: 139 ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198
+ N GL PD + +VLS C+ G+ G H + + E+N +++ LVDMYAKC
Sbjct: 281 V-NSGLVPDGFSFSSVLSACAQAGA--RCYGMWVHQLMAELGLEMNHILSSSLVDMYAKC 337
Query: 199 GFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL 258
G + A+ +F+ ++ +V W +I G A G DA+ F M++ G+ P+ +TF +L
Sbjct: 338 GRIDVAIGIFKTIKRNHVSVWNTMIGGLAAHGLGSDAVMFFREMESEGLVPDGVTFVALL 397
Query: 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPN 318
TAC H+G+V+E R+YF+ + +Y + PRI+HYG MVD +AG L+EAY++++TM ++P+
Sbjct: 398 TACSHSGMVEEARQYFEAMTTKYSITPRIEHYGAMVDTLSRAGLLDEAYDLVKTMNVKPD 457
Query: 319 VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVR 378
+IW + L+AC ++Q + E +K+ G +TL+ ++Y+ +WE +E V
Sbjct: 458 AVIWRALLSACCRYRQTKLGEITVKEI-----AFQGSGDYTLLSNIYSSANRWEDSEEVW 512
Query: 379 KLMLNQNVRKARGSS 393
K + +RK++G S
Sbjct: 513 KERKKKGIRKSKGLS 527
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 93/228 (40%), Gaps = 41/228 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
M +FS++ + D FS +L +C +H + +LG
Sbjct: 274 MNIFSKLVNSGLVPDGFSFSSVLSACAQAGARCYGMWVHQLMAELGL------------- 320
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
E N + ++++ Y+K G + A F+ + +V+ W+ MI
Sbjct: 321 -----------------EMNHILSSSLVDMYAKCGRIDVAIGIFKTIKRNHVSVWNTMIG 363
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI--VK 178
G + FREM S EGL PD +T A+L+ CSH G V + A + +
Sbjct: 364 GLAAHGLGSDAVMFFREMES-EGLVPDGVTFVALLTACSHSGMV-----EEARQYFEAMT 417
Query: 179 NEWELNEQIA--TILVDMYAKCGFLKYALMVFELMEER-NVISWTALI 223
++ + +I +VD ++ G L A + + M + + + W AL+
Sbjct: 418 TKYSITPRIEHYGAMVDTLSRAGLLDEAYDLVKTMNVKPDAVIWRALL 465
>gi|218193589|gb|EEC76016.1| hypothetical protein OsI_13171 [Oryza sativa Indica Group]
Length = 950
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 135/394 (34%), Positives = 224/394 (56%), Gaps = 7/394 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+SQM + +L +C +L +H+ LK+ ++V+V+++L+
Sbjct: 363 VSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDM 422
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A+ +F LP++N V WN++I GYS + + EA + F++MP RNVASW+++I
Sbjct: 423 YCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSII 482
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y + LK F M+++ G +P ++T +VL C+ L S L MGK H I+K
Sbjct: 483 SGYAQNRQFIDALKSFHAMLAS-GQSPGEITFSSVLLACASLCS--LEMGKMVHAKIIKL 539
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + + T L DMYAK G L + VF M +RN ++WTA+I G A G++E+++ LF
Sbjct: 540 GIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLF 599
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
E M + G+ PNE TF +L AC H+GLV+ YF+M+ + + P+ +HY CMVD+ +
Sbjct: 600 EDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMM-QACGISPKAKHYTCMVDVLAR 658
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG L EA +++ + + W + L+AC ++ +M ER K+ L+ + +N G +
Sbjct: 659 AGHLAEAEDLLLKIESKSEANSWAALLSACNIYRNKEMGERAAKR-LQELDKDNTAG-YV 716
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
L+ ++Y KW+ A +R LM N++K G S
Sbjct: 717 LLSNMYASCGKWKDAAEMRILMKGINLKKDGGCS 750
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 151/306 (49%), Gaps = 33/306 (10%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR+LFD +PER+ V++ TM+ K G+V +A + + + PL +V ++AMIA ++
Sbjct: 167 ARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELP 226
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGS-------VGLLM------------- 168
L +F EM+S G++P+++T+ +V+ C G VGL M
Sbjct: 227 KDALGVFHEMLSC-GVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLLDKNLGVRN 285
Query: 169 ---------GKSAHGFIVKNEWELNEQIA-TILVDMYAKCGFLKYALMVFELMEERNVIS 218
G + + +E E+ + ++ T L+D+YA+ G L+ A V + M ERN +S
Sbjct: 286 SLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPERNEVS 345
Query: 219 WTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMID 278
W L+ +G +++A+SL+ M A G +PN F+ VL AC + GRK
Sbjct: 346 WGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQT- 404
Query: 279 EEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
+ + ++D++ K L +A + ++ + N++ W S ++ + + A
Sbjct: 405 LKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLP-QKNIVCWNSLISGYSNNSKMVEA 463
Query: 339 ERVIKQ 344
E + K+
Sbjct: 464 EELFKK 469
>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 599
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 130/394 (32%), Positives = 214/394 (54%), Gaps = 36/394 (9%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+ +M P +++ ++K+C + L + +HSH++ G+ S +YV +L
Sbjct: 112 FYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAAL----- 166
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
I Y+K+ ++ A+ F+ MP R + +W+++I+ Y
Sbjct: 167 -------------------------IALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGY 201
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
G + LF M+ + G PD TI ++LS CS LG+ L G H + N ++
Sbjct: 202 DQNGLPQESIGLFHLMMES-GFQPDSATIVSLLSSCSQLGA--LDFGCWLHDYADGNGFD 258
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
LN + T L++MY +CG + A VF+ M+ERNV++WTA+I G GY A+ LF M
Sbjct: 259 LNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEM 318
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
+A G +PN +TF VL+AC H+GL+D+GR+ F + E Y L P ++H CMVD+FG+AG
Sbjct: 319 RAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGL 378
Query: 303 LEEAYEVIRT-MRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L +AY+ I+ + EP +W S L AC+ H+ FD+ +V + L V+PEN G + ++
Sbjct: 379 LNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLS-VEPENPGH-YVML 436
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y + + + E VR +M + ++K G S I
Sbjct: 437 SNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTI 470
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 149/327 (45%), Gaps = 52/327 (15%)
Query: 14 SDSFSILH--ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-----VTSF 66
+ S S +H +L+S NL +H+HI+ +S ++ + SLL + + S
Sbjct: 23 TQSHSPVHEALLRSGPRLRNL---QQVHAHII----VSGLHRSRSLLTKLISLVCTAGSI 75
Query: 67 GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAG 126
+AR+LF +P ++ +++++K SK G + F+ RM
Sbjct: 76 TYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRM------------------- 116
Query: 127 AYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ 186
LF G T +V+ C+ L + L +GK H ++ + +
Sbjct: 117 -------LF------SGAPQSNYTFTSVIKACADLSA--LRLGKEIHSHVMVCGYGSDMY 161
Query: 187 IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
+ L+ +YAK +K A VF+ M +R +I+W +LI G G ++++ LF +M +G
Sbjct: 162 VQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESG 221
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMID-EEYDLEPRIQHYGCMVDLFGKAGFLEE 305
+P+ T +L++C G +D G D +DL + +++++ + G + +
Sbjct: 222 FQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLG--TSLINMYTRCGNVSK 279
Query: 306 AYEVIRTMRLEPNVIIWGSFLAACKEH 332
A EV +M+ E NV+ W + ++ H
Sbjct: 280 AREVFDSMK-ERNVVTWTAMISGYGMH 305
>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Brachypodium distachyon]
Length = 610
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 129/382 (33%), Positives = 210/382 (54%), Gaps = 5/382 (1%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSF-GFARKLF 73
D F + I + +L + LH H + + S V +SL+ Y ARK+F
Sbjct: 104 DHFVLASIASATARLRSLCLGKQLHGHFVASPYSSDDVVKSSLIDMYCKCGVPDDARKVF 163
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
D + +N+V W +I GY +G EA + F MP R + +W+A+I+ ++ +G +K
Sbjct: 164 DSIVAKNSVMWTALISGYVLNGRSDEALELFRSMPGRTLFAWTALISGFVRSGESVSAVK 223
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
LF +M + D + + + G + L + ++G+ H ++ + + + +VD
Sbjct: 224 LFVDMRRDGVSIDDAFVLSSAIGGAADLAA--HVLGRQLHSLTMRLGFSSSMIVGNAVVD 281
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
MY+KC + A VFE + R++ISWT ++ G A G +E+A SL++ M GVKPNE+T
Sbjct: 282 MYSKCSDIHSAREVFEEITGRDIISWTTMLVGEAQHGRAEEAFSLYDRMVLAGVKPNEVT 341
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
F G++ AC H GLV +GR+ F + EY + PR+QHY C +DL ++G L EA E+I TM
Sbjct: 342 FVGLIYACSHAGLVQKGRQLFDSMKGEYGINPRLQHYTCYLDLLSRSGHLAEAEELITTM 401
Query: 314 RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEG 373
P+ W S L+ACK++ +M+ RV L + +P+ + L+ ++Y +N KW+
Sbjct: 402 PYVPDEATWASLLSACKKYNNAEMSIRVADNLLEL-RPKYP-STYVLLSNVYAVNGKWDS 459
Query: 374 AERVRKLMLNQNVRKARGSSVI 395
+ VRKLM + +RK G S I
Sbjct: 460 VDTVRKLMADMEIRKEPGYSWI 481
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 96/179 (53%), Gaps = 6/179 (3%)
Query: 87 MIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
++ Y+KS + + R F+ P R++ +S+++AA ++ + + L L R M+S + L P
Sbjct: 44 LVSAYAKSRLLPDTRLLFDETPRRDLHLYSSLLAAVSHSESPELVLPLLRRMLSADALRP 103
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
D + ++ S + L S L +GK HG V + + ++ + + L+DMY KCG A
Sbjct: 104 DHFVLASIASATARLRS--LCLGKQLHGHFVASPYSSDDVVKSSLIDMYCKCGVPDDARK 161
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG 265
VF+ + +N + WTALI G G S++AL LF M + +T +++ V +G
Sbjct: 162 VFDSIVAKNSVMWTALISGYVLNGRSDEALELFRSMPGRTL----FAWTALISGFVRSG 216
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/160 (18%), Positives = 73/160 (45%), Gaps = 5/160 (3%)
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR 229
+ AH ++K + +LV YAK L ++F+ R++ +++L+ +H
Sbjct: 23 RRAHARLIKEGLAQHPPAPALLVSAYAKSRLLPDTRLLFDETPRRDLHLYSSLLAAVSHS 82
Query: 230 GYSEDALSLF-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRI 287
E L L M+ A ++P+ + +A + G++ + + Y + +
Sbjct: 83 ESPELVLPLLRRMLSADALRPDHFVLASIASATARLRSLCLGKQLHGHFVASPYSSDDVV 142
Query: 288 QHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
+ ++D++ K G ++A +V ++ + N ++W + ++
Sbjct: 143 K--SSLIDMYCKCGVPDDARKVFDSI-VAKNSVMWTALIS 179
>gi|147810325|emb|CAN65024.1| hypothetical protein VITISV_026273 [Vitis vinifera]
Length = 805
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 142/391 (36%), Positives = 216/391 (55%), Gaps = 17/391 (4%)
Query: 14 SDSFSILHILKSCTHFNNLTVIHH--LHSHILKLGFISHVYVATSLLHEYVVT-SFGFAR 70
+++++ ++K+CT + + + +H+H++ GF +V ++L+ Y + G AR
Sbjct: 382 ANNYTFPPLIKACTTLGSSSKLIGCLVHAHVVTFGFDEDPFVVSALIEFYSLNFDMGTAR 441
Query: 71 KLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDP 130
LFD +P R+ V W MI GY K G+V AR FE MP RN SWSA++AAY G +
Sbjct: 442 TLFDRIPNRDVVLWTAMIDGYGKMGDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKE 501
Query: 131 GLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATI 190
L LFR M G P++ + +VL+ C+HLG+ L G H + + ++ N +AT
Sbjct: 502 VLCLFRRM-QEAGTMPNESVLVSVLTACAHLGA--LAQGLWVHSYAKQCNFDSNPILATA 558
Query: 191 LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250
LVDMY+KCG ++ AL F+ + ++ +W A+I G A G + +L LF M + G +P
Sbjct: 559 LVDMYSKCGCVESALSTFQGIPNKDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQPT 618
Query: 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI 310
E TF VLTAC H LV EG K F+ + Y +EP+ +HY C+VDL +AG L EA + I
Sbjct: 619 ETTFVAVLTACTHARLVREGLKLFEQMSSNYGVEPQXEHYACLVDLMARAGMLAEAEKFI 678
Query: 311 RTM-----RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365
R + NV WG+ L AC+ + ++ RV K+ M D G L +LY
Sbjct: 679 EEKMGGLGRGDANV--WGAXLGACRTYGNIEVGNRVWKKLADMGVA--DCGTHVLSYNLY 734
Query: 366 TMNEKWE-GAERVRKLMLNQNVRKARGSSVI 395
W+ A+RVR+L+ ++K G S+I
Sbjct: 735 R-EAGWDMEAKRVRRLISEXGMKKKPGCSII 764
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 110/277 (39%), Gaps = 73/277 (26%)
Query: 76 LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF 135
L RN +N+MI+GY P R + + M+
Sbjct: 344 LSLRNIFMYNSMIRGY-----------VLSHSPTRAILCYLDML---------------- 376
Query: 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK--------------NEW 181
N GL + T ++ C+ LGS L+G H +V +
Sbjct: 377 -----NYGLLANNYTFPPLIKACTTLGSSSKLIGCLVHAHVVTFGFDEDPFVVSALIEFY 431
Query: 182 ELNEQIA-----------------TILVDMYAKCGFLKYALMVFELMEERNVISWTALIC 224
LN + T ++D Y K G +++A ++FE M ERN ISW+A++
Sbjct: 432 SLNFDMGTARTLFDRIPNRDVVLWTAMIDGYGKMGDVEHARILFEDMPERNAISWSAVMA 491
Query: 225 GSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG---RKYFKMIDEEY 281
+ G ++ L LF MQ G PNE VLTAC H G + +G Y K + +
Sbjct: 492 AYSRVGDFKEVLCLFRRMQEAGTMPNESVLVSVLTACAHLGALAQGLWVHSYAKQCN--F 549
Query: 282 DLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPN 318
D P + +VD++ K G +E A + T + PN
Sbjct: 550 DSNPILAT--ALVDMYSKCGCVESA---LSTFQGIPN 581
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 11/152 (7%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY- 61
LF +M + ++ +L +C H L +HS+ + F S+ +AT+L+ Y
Sbjct: 505 LFRRMQEAGTMPNESVLVSVLTACAHLGALAQGLWVHSYAKQCNFDSNPILATALVDMYS 564
Query: 62 ---VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNV----AS 114
V S A F +P ++A WN MI G + +G+ ++ + F +M +
Sbjct: 565 KCGCVES---ALSTFQGIPNKDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQPTETT 621
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
+ A++ A +A GLKLF +M SN G+ P
Sbjct: 622 FVAVLTACTHARLVREGLKLFEQMSSNYGVEP 653
>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
Length = 574
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 141/394 (35%), Positives = 209/394 (53%), Gaps = 52/394 (13%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ M SVP ++++ +LK+C+ + L +H+HI+K+GF S +Y
Sbjct: 105 LYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIY---------- 154
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
T N+++ YSKSG++ AR F+++ R+ +
Sbjct: 155 --------------------TTNSLLNVYSKSGDIKSARLLFDQVDQRDTEA-------- 186
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
L LF M G+ D + + + L C+ LG L GK H +I K+E E
Sbjct: 187 ---------LNLFHRM-QTAGIKLDNVALVSTLQACADLGV--LDQGKWIHAYIKKHEIE 234
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
++ + +L+DMYAKCG L+ A+ VF MEE+ V WTA+I G A G +AL F M
Sbjct: 235 IDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKM 294
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
Q GV+PN+MTFTG+LTAC H GLV E + F+ ++ + +P I+HYGCMVDL G+AG
Sbjct: 295 QTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGL 354
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362
L+EA E+I M ++PN IWG+ L AC H ++ ++ I + L V P GG + +
Sbjct: 355 LKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQ-IGKILIQVDP-GHGGRYIHLA 412
Query: 363 DLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
++ +W A RVR+ M Q V K G SVIS
Sbjct: 413 SIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVIS 446
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 143/320 (44%), Gaps = 57/320 (17%)
Query: 11 SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFAR 70
S S++ LH+L+ C+ N+ + +H +LK G I
Sbjct: 13 SSESNAAQTLHLLQRCS---NMEELRQIHGQMLKTGLI---------------------- 47
Query: 71 KLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDP 130
DE+P + + SG++ AR F+R+ N W+ MI Y N+ +
Sbjct: 48 --LDEIPASKLLAFC----ASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEE 101
Query: 131 GLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATI 190
L L+ M+ + + + T +L CS + + L + H I+K +
Sbjct: 102 ALLLYHHMLYH-SVPHNAYTFPFLLKACSSMSA--LEETQQIHAHIIKMGFGSEIYTTNS 158
Query: 191 LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250
L+++Y+K G +K A ++F+ +++R+ +AL+LF MQ G+K +
Sbjct: 159 LLNVYSKSGDIKSARLLFDQVDQRDT-----------------EALNLFHRMQTAGIKLD 201
Query: 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDE-EYDLEPRIQHYGC-MVDLFGKAGFLEEAYE 308
+ L AC G++D+G+ I + E +++P + GC ++D++ K G LEEA E
Sbjct: 202 NVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPIL---GCVLIDMYAKCGDLEEAIE 258
Query: 309 VIRTMRLEPNVIIWGSFLAA 328
V R M E V +W + ++
Sbjct: 259 VFRKME-EKGVSVWTAMISG 277
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/369 (21%), Positives = 143/369 (38%), Gaps = 91/369 (24%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF +M + D+ +++ L++C L +H++I K HE
Sbjct: 187 LNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKK--------------HE 232
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
E + + +I Y+K G++ EA + F +M + V+ W+AMI+
Sbjct: 233 I----------------EIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMIS 276
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV--GLLMGKS---AHGF 175
Y G L+ F +M G+ P+QMT +L+ CSH G V L+ +S HGF
Sbjct: 277 GYAIHGRGREALEWFMKM-QTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGF 335
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
E +VD+ + G LK A
Sbjct: 336 KPSIEH------YGCMVDLLGRAGLLKEA------------------------------- 358
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMV 294
E+++ VKPN + +L AC G ++ G++ K++ ++P Y +
Sbjct: 359 ---EELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKIL---IQVDPGHGGRYIHLA 412
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWG-----------SFLAACKEHKQFDMAERVIK 343
+ AG +A V R M+ + + G FLA + H Q + +++
Sbjct: 413 SIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLE 472
Query: 344 QALRMVKPE 352
Q + ++ E
Sbjct: 473 QIVERLREE 481
>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
Length = 648
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 133/393 (33%), Positives = 228/393 (58%), Gaps = 11/393 (2%)
Query: 2 QLFSQMHRQ---SVPSDSFSILHILKSCTHFNNLTVIHHLHS-HILKLGFISHVYVATSL 57
++FS + R +P F+ + KS T +L H+ +L GF H +V SL
Sbjct: 124 RVFSHLRRAHGAELPFLPFAFSTLAKSATASRSLPAAAAAHAVSVLVGGFDRHRFVENSL 183
Query: 58 LHEYVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
+ YV G ARK+FDE+ E++ ++W +++ Y++SG++ A + F R P++++ +W+
Sbjct: 184 IGAYVACGDVGAARKVFDEMVEKDVISWTSIVVAYTRSGDMRSAEEVFGRCPVKDMVAWT 243
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
AM+ Y L++F M + G+ D++++ +S C+ LG+ L
Sbjct: 244 AMVTGYAQNAMPVKALEVFDRM-AELGMVIDEVSLTGAISACAQLGA--LRRAAWVQEIA 300
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
+ + N + + LVDMYAKCG + A VF M+E+NV +++++I G A G + +A+
Sbjct: 301 ERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASHGRASEAI 360
Query: 237 SLF-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
+LF EM+ V+PN +TF GVLTAC H G+V EGR YF + ++Y + P HY CMVD
Sbjct: 361 ALFKEMVNRANVEPNHVTFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMPSADHYACMVD 420
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
L G+AG ++EA +++R+M + P+ +WG+ L AC+ H + ++A +V+ + L ++PE+ G
Sbjct: 421 LLGRAGLVDEALDLVRSMSVTPHGGVWGALLGACRIHGKSEIA-KVVAEHLFKLEPESIG 479
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRK 388
+ L+ ++ KWE +VR LM Q ++K
Sbjct: 480 N-YVLLSNILASAGKWEEVSKVRILMRKQRLKK 511
>gi|147772248|emb|CAN78346.1| hypothetical protein VITISV_033453 [Vitis vinifera]
Length = 538
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 139/371 (37%), Positives = 214/371 (57%), Gaps = 9/371 (2%)
Query: 24 KSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT-SFGFARKLFDELPERNAV 82
K+C + + LH+ LKLGF HVYV T LL+ Y +F A+++FDE+P RN+V
Sbjct: 98 KACANLQHREGGLQLHALTLKLGFEFHVYVHTVLLNVYAACGAFLEAKQVFDEMPVRNSV 157
Query: 83 TWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNE 142
TWN I G +K G + AR + MP+ V SW+ +I Y L LF M +E
Sbjct: 158 TWNVFITGLAKWGELHLARSLLDEMPMPTVVSWTTIIDGYTRMNQPKQALALFLTMFLDE 217
Query: 143 GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE-QIATILVDMYAKCGFL 201
G+ P ++T+ A+ S+LG+ L + + H + K+ ++ +I T L+D YAKCG +
Sbjct: 218 GIKPTEITLLAIFPAISNLGA--LEICQLIHTYGEKSGLNASDIRIRTSLLDTYAKCGCI 275
Query: 202 KYALMVFELME--ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLT 259
+ A VF ++ RN++SWT++I A G +++AL FE MQ +KPN +TF VL
Sbjct: 276 ESASRVFGEIDAKSRNLVSWTSIISAFAMHGMAKEALENFERMQKECLKPNRITFLSVLN 335
Query: 260 ACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEV-IRTMRLEPN 318
AC H GLV+EG K+F + +Y + P ++HYGC++D+ G+AG L+EA ++ + N
Sbjct: 336 ACSHGGLVEEGLKFFTKMVNKYQISPDVKHYGCLIDMLGRAGRLDEAEKMALEIPNYVVN 395
Query: 319 VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVR 378
V+IW + L AC H +M RV ++ L M K GG + L+ +++ ++ ERVR
Sbjct: 396 VVIWRTLLGACSFHGNVEMGARVTRKILEMEK--KYGGDYVLLSNIFAGVGRFWDVERVR 453
Query: 379 KLMLNQNVRKA 389
+LM +N KA
Sbjct: 454 RLMDERNASKA 464
>gi|297744558|emb|CBI37820.3| unnamed protein product [Vitis vinifera]
Length = 504
Score = 244 bits (622), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 128/327 (39%), Positives = 198/327 (60%), Gaps = 7/327 (2%)
Query: 72 LFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPG 131
LF E+P + +TWN+MI G+++ GN+ AR F +P +N+ SW++MIA Y N G Y
Sbjct: 180 LFQEMPNPDTLTWNSMISGFAQKGNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGA 239
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
+L+R+M+ +G PD+ T+ +VLS CS G L +G H I K + I L
Sbjct: 240 TELYRQMLL-QGEKPDRHTLSSVLSVCS--GFAALHLGMQIHQQITKTVIP-DIPINNSL 295
Query: 192 VDMYAKCGFLKYALMVF-ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250
+ MY++CG + A +F E+ ++ VISW A+I G A G++ DAL LFE+M+ V+P
Sbjct: 296 ITMYSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELFELMKRLKVRPT 355
Query: 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI 310
+TF VL AC H G V EGR +FK + E+ +EPRI+H+ +VD+ G+ G LEEA ++I
Sbjct: 356 YITFISVLNACAHAGFVKEGRMHFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLI 415
Query: 311 RTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEK 370
+M EP+ +WG+ L AC+ H ++A RV +AL ++PE+ + L+ ++Y +
Sbjct: 416 NSMPFEPDKAVWGALLGACRVHNNVELA-RVAAEALMKLEPES-SAPYVLLHNMYADVGQ 473
Query: 371 WEGAERVRKLMLNQNVRKARGSSVISS 397
W+ A +R +M N+RK G S + S
Sbjct: 474 WDNATEMRMMMERNNIRKQPGYSWVDS 500
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 132/301 (43%), Gaps = 33/301 (10%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A +LFD + ERN V+WN M+ G+ ++G+V A +FF RMP R+ AS SA++A + G
Sbjct: 4 ALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQNGEL 63
Query: 129 DPGLKLF---REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLM-----------GKSAHG 174
D ++ R ++G I +L+G G V G+ G
Sbjct: 64 DEAKRILLTSRRQDDDKGDLVHAYNI--LLAGYGQNGRVDKARQLFDQIPFYDGGQKDGG 121
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
+N N I Y K + A ++F+ M+ER+ ISW +I G E+
Sbjct: 122 RFERNVVSWNSMIMC-----YVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEE 176
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
A LF+ M P+ +T+ +++ G ++ R F I ++ + + M+
Sbjct: 177 AWMLFQEMP----NPDTLTWNSMISGFAQKGNLELARALFATIPQK-----NLVSWNSMI 227
Query: 295 DLFGKAGFLEEAYEVIRTMRLE---PNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351
+ G + A E+ R M L+ P+ S L+ C + ++ +Q + V P
Sbjct: 228 AGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTVIP 287
Query: 352 E 352
+
Sbjct: 288 D 288
>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 614
Score = 244 bits (622), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 142/397 (35%), Positives = 216/397 (54%), Gaps = 43/397 (10%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF QM+ + VP +S ++L ++ +C NL + LH LK GF S V V
Sbjct: 130 LFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVV-------- 181
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
N I Y K G+V A+ F+ MP++ + SW+AM++ Y
Sbjct: 182 ----------------------NCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGY 219
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLG--SVG--LLMGKSAHGFIVK 178
G L+L+R M N G+ PD +T+ VLS C++LG SVG + A GF
Sbjct: 220 AQNGLATNVLELYRNMDMN-GVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTS- 277
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
N + L++MYA+CG L A VF+ M ER ++SWTA+I G G+ E A+ L
Sbjct: 278 -----NPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQL 332
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F+ M +G++P+ F VL+AC H GL D+G +YFKM+ Y LEP +HY CMVDL G
Sbjct: 333 FKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLG 392
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG L+EA +I +M ++P+ +WG+ L ACK HK ++AE ++ + + +PEN G +
Sbjct: 393 RAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIEL-EPENI-GYY 450
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y+ +G R+R +M + ++K G S +
Sbjct: 451 VLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYV 487
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/363 (24%), Positives = 166/363 (45%), Gaps = 38/363 (10%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+ QM R ++F+ LKSC + + H I K+G + +V T L+
Sbjct: 25 LSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLISM 84
Query: 61 YVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y S ARK+F+E +S+ VC ++A++
Sbjct: 85 YCKGSLVDNARKVFEE-------------NFHSRKLTVC----------------YNALV 115
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y++ + LFR+M + EG+ + +T+ ++ C + + L +G S H +K
Sbjct: 116 SGYVSNSKCSDAVLLFRQM-NEEGVPVNSVTLLGLIPAC--VSPINLELGSSLHCSTLKY 172
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
++ + + + MY KCG + YA +F+ M + +ISW A++ G A G + + L L+
Sbjct: 173 GFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELY 232
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKY-FKMIDEEYDLEPRIQHYGCMVDLFG 298
M GV P+ +T GVL++C + G G + FKM + P + + +++++
Sbjct: 233 RNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNN--ALINMYA 290
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+ G L +A V M E ++ W + + H ++A ++ K+ +R E DG F
Sbjct: 291 RCGNLTKAQAVFDGMP-ERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRS-GIEPDGTAF 348
Query: 359 TLI 361
+
Sbjct: 349 VCV 351
>gi|413944077|gb|AFW76726.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
Length = 646
Score = 244 bits (622), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 122/329 (37%), Positives = 196/329 (59%), Gaps = 8/329 (2%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A+++FD +P ++ +W +M+ Y+K G++ A F+ +P RNV SWS M+AAY +A
Sbjct: 287 AKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMP 346
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGS--VGLLMGKSAHGFIVKNEWELNEQ 186
D +++F +MI+ G+ P T+ +VLS C+ L S VG + + +IV ++ EL
Sbjct: 347 DEAIRIFNDMIA-AGVEPIDATLVSVLSACAQLCSLDVGTWLYDT---YIVSHKVELTPN 402
Query: 187 IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
++ +DM+AKCG + A +F ME++NV+SW +I G E+AL LF+ + G
Sbjct: 403 LSNAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNG 462
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
+ P+E T+ GVL+AC H GLV EGR +FK + Y +EPR +HY CM+DL GK G L+EA
Sbjct: 463 ILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLQEA 522
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366
+EV R+M + + WG+ L AC+ H ++ + L + P +D G++ L+ +Y
Sbjct: 523 FEVARSMPVGADEAGWGALLNACRMHGNVEIG-KCAADKLAGLDP-SDSGIYVLMSQIYA 580
Query: 367 MNEKWEGAERVRKLMLNQNVRKARGSSVI 395
KW + +R +M ++ V+K G S I
Sbjct: 581 SKSKWGQVKMLRTVMRDRRVKKNPGCSSI 609
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 138/293 (47%), Gaps = 38/293 (12%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
N ++ Y+ S + +AR F+ M R+V SW+ +I Y G D ++F M+ E +
Sbjct: 170 NALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESV 229
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDM---------- 194
P+++T+ A S +G +GL G++ H IV++ ++ + LVDM
Sbjct: 230 WPNEVTLVAAASAAGQMGLLGL--GRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAA 287
Query: 195 ---------------------YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE 233
YAKCG L+ A +F+ + RNV+SW+ ++ +H +
Sbjct: 288 KEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPD 347
Query: 234 DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK--MIDEEYDLEPRIQHYG 291
+A+ +F M A GV+P + T VL+AC +D G + ++ + +L P + +
Sbjct: 348 EAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSN-- 405
Query: 292 CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
+D+F K G + A + M + NV+ W + + A H Q + A + ++
Sbjct: 406 AFIDMFAKCGDVGAASRLFSNME-DKNVVSWNTMIMAHGLHGQPEEALHLFQE 457
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 87/230 (37%), Gaps = 44/230 (19%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+++F+ M V +++ +L +C +L V L+ + +SH T L
Sbjct: 350 IRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYDTYI----VSHKVELTPNLSN 405
Query: 61 YVVTSF------GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVAS 114
+ F G A +LF + ++N V+WNTMI + G EA
Sbjct: 406 AFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEA-------------- 451
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
L LF+E N G+ PD+ T VLS CSH G V
Sbjct: 452 -----------------LHLFQEFKGN-GILPDEATYIGVLSACSHGGLVSEGRCHFKEM 493
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALI 223
IV E A ++D+ K G L+ A V M + W AL+
Sbjct: 494 KIVYGIEPRAEHYAC-MIDLLGKVGLLQEAFEVARSMPVGADEAGWGALL 542
>gi|357463685|ref|XP_003602124.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491172|gb|AES72375.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 244 bits (622), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 200/335 (59%), Gaps = 12/335 (3%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR++F+ +PERN W++M+ GY K G+V EA F R+P+RN+ W++MIA Y+ G
Sbjct: 200 AREVFELMPERNYFVWSSMVCGYCKKGDVMEAEAIFRRIPVRNLEIWNSMIAGYVQNGCG 259
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ L+ F EM +G PD+ T+ +VLS C+ LG L GK H I +N+ +
Sbjct: 260 EKALEAFGEM-GVDGFEPDEFTVVSVLSACAQLGD--LDAGKQMHHMIECKGIAVNQFVL 316
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
+ L+DMYAKCG L A +VFE ERNV W A+I G A G + L + MQ + ++
Sbjct: 317 SGLIDMYAKCGDLVNARLVFESCNERNVFCWNAMIAGFAVNGQCNEVLEYLDRMQESNIR 376
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
+ +TF VL+AC H GL+ E + + EEY +E I+HYGCMVDL G+AG L+EAYE
Sbjct: 377 LDAVTFITVLSACAHGGLMSEALEVISKM-EEYGIEMGIRHYGCMVDLLGRAGKLKEAYE 435
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT---LICDLY 365
+I+ M ++PN + G+ + AC H MAE+V+K M+ ++ V + L+ ++Y
Sbjct: 436 LIKRMPMKPNETVLGAMIGACWIHSDMKMAEQVMK----MIGADSAACVNSHNVLLSNIY 491
Query: 366 TMNEKWEGAERVRKLMLNQNVRKARG-SSVISSLS 399
+EKWE AE +R M++ K G SS+I S S
Sbjct: 492 AASEKWEKAEMIRSSMVDGGSEKIPGYSSIILSNS 526
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 149/359 (41%), Gaps = 77/359 (21%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ Q R D I +LK+C L + LH+ +K G V++ T+++ Y
Sbjct: 39 LYKQT-RHDTTHDPTVIPQLLKACDSHPFLPYVKSLHAESIKAGSDVDVFIGTAIVAAYA 97
Query: 63 VTSFGF-ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
ARK+FD +PERN VTWN MI GY ++G+ A FE MP + SWS MI
Sbjct: 98 KCGVVCDARKVFDLMPERNVVTWNAMIGGYLRNGDAKSALLAFEEMPGKTRVSWSQMIGG 157
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
+ G D +T A F K +
Sbjct: 158 FARNG--------------------DTLT---------------------ARKFFDKVPY 176
Query: 182 ELNE-QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR----------- 229
EL + I T++VD YAK G ++ A VFELM ERN W++++CG +
Sbjct: 177 ELKDVVIWTVMVDGYAKKGEMEDAREVFELMPERNYFVWSSMVCGYCKKGDVMEAEAIFR 236
Query: 230 --------------------GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
G E AL F M G +P+E T VL+AC G +D
Sbjct: 237 RIPVRNLEIWNSMIAGYVQNGCGEKALEAFGEMGVDGFEPDEFTVVSVLSACAQLGDLDA 296
Query: 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
G++ MI+ + + G ++D++ K G L A V + E NV W + +A
Sbjct: 297 GKQMHHMIECKGIAVNQFVLSG-LIDMYAKCGDLVNARLVFESCN-ERNVFCWNAMIAG 353
>gi|345505214|gb|AEN99831.1| chlororespiratory reduction 4 [Brassica rapa]
Length = 612
Score = 244 bits (622), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 119/327 (36%), Positives = 195/327 (59%), Gaps = 4/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A+ LFD +P R+ VTW MI GY K G V EA+ F++MP R+V +++M++ + +
Sbjct: 278 AKGLFDVMPRRDVVTWAIMIDGYGKLGLVHEAKTLFDQMPHRDVVVYNSMMSGXVQNRYH 337
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L++F M LTPD+ ++ VLS + LG + + H +IV+ ++ + ++
Sbjct: 338 MEALEVFNHMEKESHLTPDETSLVIVLSAXAQLGRLSKAI--DMHLYIVEKQFPSSGKLG 395
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+DMY+KCG +++A+ VFE +E +++ W A+I G A G E A + ++ +K
Sbjct: 396 VALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLLQIERRSIK 455
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+ +TF GVL AC H+GLV EG F+++ ++ +EPR+QHYGCMVD+ ++G +E A
Sbjct: 456 PDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILARSGSIELAKN 515
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+I M +EPN +IW +FL AC HK+F+ E V K + ++ + + L+ ++Y N
Sbjct: 516 LIEGMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLI--LQAGYNPSSYVLLSNMYASN 573
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
W+ RVR +M +N+ K G S I
Sbjct: 574 GMWKDVRRVRTMMKEKNIEKIPGCSWI 600
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 168/365 (46%), Gaps = 35/365 (9%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L M VP D FS LK+C+ + +H ++K G S +++ L+ Y+
Sbjct: 115 LLCLMLENGVPVDKFSFSLALKACSRLGFVKEGTQVHGFLIKTGTWSDLFLQNCLIGLYI 174
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL--RNVASWSAMI 119
GFAR++FD +P+R++V++N+MI GY K G V A + F MP RN+ +W++MI
Sbjct: 175 KCGCLGFARQVFDRMPQRDSVSYNSMIDGYLKCGLVESAGELFGLMPREKRNLITWNSMI 234
Query: 120 AAYLN-AGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
Y A + KLF EM + ++ + M G V G + GL +
Sbjct: 235 GGYAQRADGVNVAAKLFDEMPEKDLISWNSMIGGYVKHGRIE-DAKGLFDVMPRRDVVT- 292
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
W I++D Y K G + A +F+ M R+V+ + +++ G Y +AL +
Sbjct: 293 --W-------AIMIDGYGKLGLVHEAKTLFDQMPHRDVVVYNSMMSGXVQNRYHMEALEV 343
Query: 239 FEMMQA-TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE-YDLEPRIQHYG----C 292
F M+ + + P+E + VL+A G + K ID Y +E + G
Sbjct: 344 FNHMEKESHLTPDETSLVIVLSAXAQLG------RLSKAIDMHLYIVEKQFPSSGKLGVA 397
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH----KQFDMAERVIKQALRM 348
++D++ K G ++ A V + ++ W + + H FDM ++ + R
Sbjct: 398 LIDMYSKCGSIQHAMRVFEGIE-SKSIDHWNAMIGGLAVHGLGESAFDMLLQIER---RS 453
Query: 349 VKPEN 353
+KP++
Sbjct: 454 IKPDH 458
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 110/251 (43%), Gaps = 43/251 (17%)
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
W+ +I ++ + L L M+ N G+ D+ + L CS LG V G HG
Sbjct: 96 WNVVIKSHSHGVDPRKALFLLCLMLEN-GVPVDKFSFSLALKACSRLGFVK--EGTQVHG 152
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
F++K + + L+ +Y KCG L +A VF+ M +R+ +S+ ++I G G E
Sbjct: 153 FLIKTGTWSDLFLQNCLIGLYIKCGCLGFARQVFDRMPQRDSVSYNSMIDGYLKCGLVES 212
Query: 235 ALSLFEMM-------------------QATGV-----------KPNEMTFTGVLTACVHT 264
A LF +M +A GV + + +++ ++ V
Sbjct: 213 AGELFGLMPREKRNLITWNSMIGGYAQRADGVNVAAKLFDEMPEKDLISWNSMIGGYVKH 272
Query: 265 GLVDEGRKYFKMIDEEYDLEPR--IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
G +++ + F D+ PR + + M+D +GK G + EA + M +V+++
Sbjct: 273 GRIEDAKGLF-------DVMPRRDVVTWAIMIDGYGKLGLVHEAKTLFDQMP-HRDVVVY 324
Query: 323 GSFLAACKEHK 333
S ++ +++
Sbjct: 325 NSMMSGXVQNR 335
>gi|225428117|ref|XP_002278375.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial [Vitis vinifera]
Length = 681
Score = 244 bits (622), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 128/327 (39%), Positives = 198/327 (60%), Gaps = 7/327 (2%)
Query: 72 LFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPG 131
LF E+P + +TWN+MI G+++ GN+ AR F +P +N+ SW++MIA Y N G Y
Sbjct: 357 LFQEMPNPDTLTWNSMISGFAQKGNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGA 416
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
+L+R+M+ +G PD+ T+ +VLS CS G L +G H I K + I L
Sbjct: 417 TELYRQMLL-QGEKPDRHTLSSVLSVCS--GFAALHLGMQIHQQITKTVIP-DIPINNSL 472
Query: 192 VDMYAKCGFLKYALMVF-ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250
+ MY++CG + A +F E+ ++ VISW A+I G A G++ DAL LFE+M+ V+P
Sbjct: 473 ITMYSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELFELMKRLKVRPT 532
Query: 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI 310
+TF VL AC H G V EGR +FK + E+ +EPRI+H+ +VD+ G+ G LEEA ++I
Sbjct: 533 YITFISVLNACAHAGFVKEGRMHFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLI 592
Query: 311 RTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEK 370
+M EP+ +WG+ L AC+ H ++A RV +AL ++PE+ + L+ ++Y +
Sbjct: 593 NSMPFEPDKAVWGALLGACRVHNNVELA-RVAAEALMKLEPES-SAPYVLLHNMYADVGQ 650
Query: 371 WEGAERVRKLMLNQNVRKARGSSVISS 397
W+ A +R +M N+RK G S + S
Sbjct: 651 WDNATEMRMMMERNNIRKQPGYSWVDS 677
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 122/275 (44%), Gaps = 66/275 (24%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA- 127
AR LFD +P+RN VTWN+MI GY + + +AR F+ MP R+V SW+ MI+ Y++
Sbjct: 86 ARALFDAMPQRNIVTWNSMITGYVRRREMAKARKLFDEMPDRDVVSWNLMISGYVSCQGR 145
Query: 128 -YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ 186
+ G LF EM + ++ + M G
Sbjct: 146 WVEEGRHLFDEMPERDCVSWNTMISG---------------------------------- 171
Query: 187 IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
Y + G + AL +F+ M+ERNV+SW A++ G G E A+ F M
Sbjct: 172 --------YTRSGRMDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMP--- 220
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYF----KMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
+ + + + ++ + G +DE ++ + D++ DL + Y ++ +G+ G
Sbjct: 221 -ERDSASLSALVAGLIQNGELDEAKRILLTSRRQDDDKGDL---VHAYNILLAGYGQNGR 276
Query: 303 LEEAYEVIRTM-----------RLEPNVIIWGSFL 326
+++A ++ + R E NV+ W S +
Sbjct: 277 VDKARQLFDQIPFYDGGQKDGGRFERNVVSWNSMI 311
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 130/297 (43%), Gaps = 64/297 (21%)
Query: 56 SLLHEYVVTSFGF--------ARKLFDELP------------ERNAVTWNTMIKGYSKSG 95
L+H Y + G+ AR+LFD++P ERN V+WN+MI Y K+
Sbjct: 259 DLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRFERNVVSWNSMIMCYVKAR 318
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155
++ AR F++M R+ SW+ MI+ Y+ + LF+EM + PD +T +++
Sbjct: 319 DIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEMPN-----PDTLTWNSMI 373
Query: 156 SGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERN 215
SG +A+ G L+ A +F + ++N
Sbjct: 374 SG-------------------------------------FAQKGNLELARALFATIPQKN 396
Query: 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275
++SW ++I G + G + A L+ M G KP+ T + VL+ C + G + +
Sbjct: 397 LVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQ 456
Query: 276 MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
I + + P I ++ ++ + G + EA + ++L+ VI W + + H
Sbjct: 457 QITKT--VIPDIPINNSLITMYSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFH 511
>gi|330689867|gb|AEC33263.1| putative pentatricopeptide protein [Triticum aestivum]
Length = 644
Score = 244 bits (622), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 137/403 (33%), Positives = 223/403 (55%), Gaps = 15/403 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVI--HHLHSHILKLGFI-SHVYVATSL 57
++LF MHR ++ S+ L +C + +L + +H + + G + +++V SL
Sbjct: 195 LELFGDMHRSGCEGNAESVAVALSACPYAGDLALAKGRAIHGYGVAKGVVRGYLFVTNSL 254
Query: 58 LHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR------ 110
+ Y + AR++F E ERN VTWN +I Y+ +G EA + RM R
Sbjct: 255 VCMYGKLGKMDDAREVFREAGERNTVTWNALITSYAAAGMCDEALNVLVRMEQRGGMVAP 314
Query: 111 NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGK 170
NV SWSA+I + ++G + L+LFR M + L+P+ +T+ VLS C+ + + +G+
Sbjct: 315 NVMSWSAVIGGFASSGDNERALELFRRM-QQQWLSPNVVTLATVLSACTE--QLAVRLGR 371
Query: 171 SAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRG 230
H +++ + + +A L++MYAKCG + A VF+ M+ R+++SW +++ G G
Sbjct: 372 EVHADAIRSMVDRHSLVANGLINMYAKCGRVADARTVFDGMKSRDLVSWNSMLAGYGMHG 431
Query: 231 YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHY 290
+DAL++F M V P+ +TF VL+AC H G V EGR+ F + E+ + P ++HY
Sbjct: 432 LCDDALAVFTDMAEAKVDPDGVTFVAVLSACSHAGRVSEGRRLFDQMILEHKISPSMEHY 491
Query: 291 GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVK 350
CMVDL G+AG L+EA E I TM + ++ +WG+ L +C+ H MAE I +AL+
Sbjct: 492 TCMVDLLGRAGLLKEASEFIETMPMGADLCVWGALLNSCRIHGDAAMAEATIAKALQAGV 551
Query: 351 PENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
G TLI +LY W+ ++RVR + +RK G S
Sbjct: 552 VTT--GNHTLITNLYAACGMWDDSKRVRVMTREAGLRKNPGQS 592
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 103/393 (26%), Positives = 167/393 (42%), Gaps = 55/393 (13%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGF-ARKLF 73
+S+++ L++ T + +H+H L LG +H VA LL Y A +F
Sbjct: 75 NSYTLPLALRAATS----PIASAIHAHALHLGLHAHPDVAGQLLAAYARHGRADEAHHVF 130
Query: 74 DELPERNA-VTWNTMIKGYSKSGNVCEARDFFERM-----PLRNVASWSAMIAAYLNAGA 127
D +P + A ++WNT+I YS + A F RM L + +W+ +++A+ G
Sbjct: 131 DAMPSKRATMSWNTLISAYSVCCDPNNAMATFARMAAAGEALPDAVTWTTLLSAHARCGK 190
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF------------ 175
+ L+LF +M G + ++ LS C + G + L G++ HG+
Sbjct: 191 HPVVLELFGDM-HRSGCEGNAESVAVALSACPYAGDLALAKGRAIHGYGVAKGVVRGYLF 249
Query: 176 --------------------IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER- 214
+ + E N L+ YA G AL V ME+R
Sbjct: 250 VTNSLVCMYGKLGKMDDAREVFREAGERNTVTWNALITSYAAAGMCDEALNVLVRMEQRG 309
Query: 215 -----NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
NV+SW+A+I G A G +E AL LF MQ + PN +T VL+AC V
Sbjct: 310 GMVAPNVMSWSAVIGGFASSGDNERALELFRRMQQQWLSPNVVTLATVLSACTEQLAVRL 369
Query: 270 GRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
GR+ + I D + + +++++ K G + +A V M+ +++ W S LA
Sbjct: 370 GREVHADAIRSMVDRHSLVANG--LINMYAKCGRVADARTVFDGMKSR-DLVSWNSMLAG 426
Query: 329 CKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
H D A V + K + DG F +
Sbjct: 427 YGMHGLCDDALAVFTD-MAEAKVDPDGVTFVAV 458
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 107/283 (37%), Gaps = 40/283 (14%)
Query: 108 PLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCS-------- 159
P W+ ++ A++ D L L+R M + P+ T+ L +
Sbjct: 36 PTTCAVPWNRLLRAHICRSRPDLALALYRRMRALSPTLPNSYTLPLALRAATSPIASAIH 95
Query: 160 ----HLG-------SVGLLMGKSAHGFIVKNEW---ELNEQIATI----LVDMYAKCGFL 201
HLG + LL + HG + + + AT+ L+ Y+ C
Sbjct: 96 AHALHLGLHAHPDVAGQLLAAYARHGRADEAHHVFDAMPSKRATMSWNTLISAYSVCCDP 155
Query: 202 KYALMVFELMEER-----NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTG 256
A+ F M + ++WT L+ A G L LF M +G + N +
Sbjct: 156 NNAMATFARMAAAGEALPDAVTWTTLLSAHARCGKHPVVLELFGDMHRSGCEGNAESVAV 215
Query: 257 VLTACVHTG--LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR 314
L+AC + G + +GR + + + +V ++GK G +++A EV R
Sbjct: 216 ALSACPYAGDLALAKGRAIHGYGVAKGVVRGYLFVTNSLVCMYGKLGKMDDAREVFREAG 275
Query: 315 LEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
E N + W + + + D A V+ V+ E GG+
Sbjct: 276 -ERNTVTWNALITSYAAAGMCDEALNVL------VRMEQRGGM 311
>gi|125548358|gb|EAY94180.1| hypothetical protein OsI_15952 [Oryza sativa Indica Group]
Length = 655
Score = 243 bits (621), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 117/327 (35%), Positives = 196/327 (59%), Gaps = 9/327 (2%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A KLF E+P+R+ ++W+ +++GY + G++ A +F R P ++ SW+ +I+ Y + GA
Sbjct: 301 ALKLFSEMPDRDQISWHAILQGYVQQGDMDSANVWFPRAPNKDAISWNTLISGYKDEGA- 359
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L L EMI GL PDQ T+ V+S C+ L S+G GK H + +K +E + +
Sbjct: 360 ---LSLLSEMIRG-GLKPDQATLSVVISICASLVSLGC--GKMVHLWAIKTGFEHDALVM 413
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
+ L+ MY+KCG + A VFEL+ +R+ ++W A+I A+ G +++AL +F+MM G +
Sbjct: 414 SSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFR 473
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+ TF +L+AC H G + EG +F+ + E+++L PR HY CMVDL G++GF+ +AY+
Sbjct: 474 PDHATFLSILSACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYSCMVDLLGRSGFIHQAYD 533
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
R + + W + +AC H + + E + + L+ +P +DGG++TL+ ++Y
Sbjct: 534 FTRRIPSDHRTTAWETLFSACNSHGEIQLGEIIARNVLK-ARP-SDGGMYTLLSNIYAAK 591
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
E W A VR M + ++K G S I
Sbjct: 592 EMWSSAASVRGFMKERGLKKETGCSWI 618
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 127/278 (45%), Gaps = 37/278 (13%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
ARK+FD +P RN+V+W ++ GY++ G V EAR+ F R+P RNV SW+AM++ Y G
Sbjct: 84 ARKVFDAMPVRNSVSWAALLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMV 143
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE--- 185
+LF M + ++ M G + K H V+ EL +
Sbjct: 144 KRARELFDMMPWRDDVSWLTMISGYI---------------KRKH---VREARELFDSMP 185
Query: 186 ----QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ L+ Y + G+++ A ++F M+ RN +SW +I G A G A LF+
Sbjct: 186 SPPTSVCNALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDE 245
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR-IQHYGCMVDLFGKA 300
M V ++ T ++ + G VD K FK D+ R + M+D F +
Sbjct: 246 MPEKDV----LSRTAIMRGYLQNGSVDAAWKVFK------DMPHRDTVAWNTMMDGFVRN 295
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
L++A ++ M + + I W + L + D A
Sbjct: 296 DRLDDALKLFSEMP-DRDQISWHAILQGYVQQGDMDSA 332
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/285 (20%), Positives = 114/285 (40%), Gaps = 32/285 (11%)
Query: 104 FERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSG---CSH 160
F+ M RNV +W+ M++ + K+F M + ++ A+L+G C
Sbjct: 57 FDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMP-----VRNSVSWAALLTGYARCGR 111
Query: 161 LGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWT 220
+ L + +V W +V YA+ G +K A +F++M R+ +SW
Sbjct: 112 VAEARELFNRIPDRNVVS--W-------NAMVSGYARNGMVKRARELFDMMPWRDDVSWL 162
Query: 221 ALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE 280
+I G R + +A LF+ M + P +L+ V G + F +
Sbjct: 163 TMISGYIKRKHVREARELFDSMPS----PPTSVCNALLSGYVELGYMRAAEVLFGQMQTR 218
Query: 281 YDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAER 340
+ + M+ + +AG + A + M E +V+ + + ++ D A +
Sbjct: 219 NPVS-----WNVMITGYARAGSMGIAQRLFDEMP-EKDVLSRTAIMRGYLQNGSVDAAWK 272
Query: 341 VIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQN 385
V K P D + + D + N++ + A ++ M +++
Sbjct: 273 VFKDM-----PHRDTVAWNTMMDGFVRNDRLDDALKLFSEMPDRD 312
>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 637
Score = 243 bits (621), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 133/395 (33%), Positives = 214/395 (54%), Gaps = 35/395 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F +M + F+I +L +C + LH +K ++YV T+LL
Sbjct: 149 LDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKKLHCLSMKTSLDLNLYVGTALL-- 206
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
Y+K G + +A FE M ++ +WS+M+A
Sbjct: 207 ----------------------------DLYAKCGMINDAVQVFESMQDKSSVTWSSMVA 238
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y+ + Y+ L L+R L +Q T+ +V+ CS+L + L+ GK H I K+
Sbjct: 239 GYVQSKNYEEALLLYRRA-QRMSLEQNQFTLSSVICACSNLAA--LIEGKQMHAVIRKSG 295
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ N +A+ VDMYAKCG L+ + ++F ++E+N+ W +I G A ++ + LFE
Sbjct: 296 FGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFE 355
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
MQ G+ PNE+TF+ +L+ C HTGLV+EGR++FK++ Y L P + HY CMVD+ G+A
Sbjct: 356 KMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRA 415
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G L EAYE+I+++ EP IWGS LA+C+ K ++AE K+ + +PEN G L
Sbjct: 416 GLLSEAYELIKSIPFEPTASIWGSLLASCRVCKNLELAEVAAKKLFEL-EPENAGN-HVL 473
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y N++WE + RKL+ + +V+K RG S I
Sbjct: 474 LSNIYAANKQWEEIAKSRKLLRDCDVKKVRGQSWI 508
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 128/250 (51%), Gaps = 5/250 (2%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
N +I YSK G V AR F+ M R++ SW+ MI Y L +F EM NEG
Sbjct: 102 NVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEM-RNEGF 160
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
+ TI +VLS C + L K H +K +LN + T L+D+YAKCG + A
Sbjct: 161 KFSEFTISSVLSACG--ANCDALECKKLHCLSMKTSLDLNLYVGTALLDLYAKCGMINDA 218
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
+ VFE M++++ ++W++++ G E+AL L+ Q ++ N+ T + V+ AC +
Sbjct: 219 VQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNL 278
Query: 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324
+ EG++ +I + + VD++ K G L E+Y + ++ E N+ +W +
Sbjct: 279 AALIEGKQMHAVI-RKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQ-EKNIELWNT 336
Query: 325 FLAACKEHKQ 334
++ +H +
Sbjct: 337 IISGFAKHAR 346
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 120/236 (50%), Gaps = 7/236 (2%)
Query: 154 VLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE 213
+L C+ G+V + K+ HG ++ E + + ++ +L++ Y+KCGF++ A VF+ M E
Sbjct: 69 ILQLCARNGAV--MEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGMLE 126
Query: 214 RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKY 273
R+++SW +I +AL +F M+ G K +E T + VL+AC E +K
Sbjct: 127 RSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKK- 185
Query: 274 FKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHK 333
+ + L+ + ++DL+ K G + +A +V +M+ + + + W S +A + K
Sbjct: 186 LHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQ-DKSSVTWSSMVAGYVQSK 244
Query: 334 QFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAER---VRKLMLNQNV 386
++ A + ++A RM +N + ++IC + EG + +RK NV
Sbjct: 245 NYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNV 300
>gi|356553601|ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Glycine max]
Length = 534
Score = 243 bits (621), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 124/360 (34%), Positives = 212/360 (58%), Gaps = 6/360 (1%)
Query: 37 HLHSHILKLGFISHVYVATSLLHEYVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSG 95
LH ++KLG ++ ++++ Y + AR++FDEL + + V N+MI G +K G
Sbjct: 145 QLHGRVVKLGLEKDQFIQNTIIYMYANSGLLSEARRVFDELVDLDVVACNSMIMGLAKCG 204
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155
V ++R F+ MP R +W++MI+ Y+ L+LFR+M E + P + T+ ++L
Sbjct: 205 EVDKSRRLFDNMPTRTRVTWNSMISGYVRNKRLMEALELFRKM-QGERVEPSEFTMVSLL 263
Query: 156 SGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERN 215
S C+HLG+ L G+ H ++ + +ELN + T ++DMY KCG + A+ VFE R
Sbjct: 264 SACAHLGA--LKHGEWVHDYVKRGHFELNVIVLTAIIDMYCKCGVIVKAIEVFEASPTRG 321
Query: 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275
+ W ++I G A GY A+ F ++A+ +KP+ ++F GVLTAC + G V + R YF
Sbjct: 322 LSCWNSIIIGLALNGYERKAIEYFSKLEASDLKPDHVSFIGVLTACKYIGAVGKARDYFS 381
Query: 276 MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQF 335
++ +Y++EP I+HY CMV++ G+A LEEA ++I+ M L+ + IIWGS L++C++H
Sbjct: 382 LMMNKYEIEPSIKHYTCMVEVLGQAALLEEAEQLIKGMPLKADFIIWGSLLSSCRKHGNV 441
Query: 336 DMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++A+R ++ + P + G + L+ ++ + ++E A R LM + K G S I
Sbjct: 442 EIAKRAAQRVCEL-NPSDASG-YLLMSNVQAASNQFEEAMEQRILMRERLAEKEPGCSSI 499
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 74/327 (22%), Positives = 129/327 (39%), Gaps = 67/327 (20%)
Query: 14 SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLF 73
SD + + CT+ +L +H+HI+K G H A+ +L
Sbjct: 23 SDQPCLTMLQTQCTNMKDL---QKIHAHIIKTGLAHHTVAASRVL--------------- 64
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
T+ S SG++ A F +P N+ W+ +I + + +
Sbjct: 65 ---------TFCA-----SSSGDINYAYLLFTTIPSPNLYCWNTIIRGFSRSSTPHLAIS 110
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
LF +M+ + L P ++T +V + LG+ G HG +VK E ++ I ++
Sbjct: 111 LFVDMLCSSVL-PQRLTYPSVFKAYAQLGAG--YDGAQLHGRVVKLGLEKDQFIQNTIIY 167
Query: 194 MYA-------------------------------KCGFLKYALMVFELMEERNVISWTAL 222
MYA KCG + + +F+ M R ++W ++
Sbjct: 168 MYANSGLLSEARRVFDELVDLDVVACNSMIMGLAKCGEVDKSRRLFDNMPTRTRVTWNSM 227
Query: 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD 282
I G +AL LF MQ V+P+E T +L+AC H G + G + +
Sbjct: 228 ISGYVRNKRLMEALELFRKMQGERVEPSEFTMVSLLSACAHLGALKHGEWVHDYVKRGH- 286
Query: 283 LEPRIQHYGCMVDLFGKAGFLEEAYEV 309
E + ++D++ K G + +A EV
Sbjct: 287 FELNVIVLTAIIDMYCKCGVIVKAIEV 313
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 108/239 (45%), Gaps = 39/239 (16%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF +M + V F+++ +L +C H LG + H +H+
Sbjct: 241 LELFRKMQGERVEPSEFTMVSLLSACAH----------------LGALKH----GEWVHD 280
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
YV R F E N + +I Y K G + +A + FE P R ++ W+++I
Sbjct: 281 YV------KRGHF----ELNVIVLTAIIDMYCKCGVIVKAIEVFEASPTRGLSCWNSIII 330
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF-IVKN 179
G ++ F ++ +++ L PD ++ VL+ C ++G+V GK+ F ++ N
Sbjct: 331 GLALNGYERKAIEYFSKLEASD-LKPDHVSFIGVLTACKYIGAV----GKARDYFSLMMN 385
Query: 180 EWELNEQIA--TILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSEDA 235
++E+ I T +V++ + L+ A + + M + + I W +L+ G E A
Sbjct: 386 KYEIEPSIKHYTCMVEVLGQAALLEEAEQLIKGMPLKADFIIWGSLLSSCRKHGNVEIA 444
>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
Length = 599
Score = 243 bits (621), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 143/430 (33%), Positives = 231/430 (53%), Gaps = 46/430 (10%)
Query: 5 SQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSL-LHEYVV 63
+Q+H S + +L++ FN+ + +H+ I+K + T + L
Sbjct: 50 NQIHNVKPQSSETLKIDLLRN---FNSPFELRQVHAQIIKTNAPLSILPLTRVGLVCAFT 106
Query: 64 TSFGFARKLFDELPERNAVT--WNTMIKGYSKSGNVCEARDFFERMPLRNVA-------- 113
SF +A+++F + ++ T WN+ +K ++ + +A F R+ +V
Sbjct: 107 PSFHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSS 166
Query: 114 ---------------------------SWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
SW++MIA Y+ G + LF +M G+
Sbjct: 167 VLRACLNLLDLSNGRILHGVVEKVGFRSWTSMIAGYVQCGKAKEAIHLFAKM-EEAGVKC 225
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
+++T+ AVL+ C+ LG++ L G H + ++ ++ N +I+ L+DMY KCG L+ A
Sbjct: 226 NEVTVVAVLAACADLGALDL--GMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACK 283
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
VFE MEER V+SW+A+I G A G +E+AL LF M G++PN +TF G+L AC H GL
Sbjct: 284 VFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGL 343
Query: 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
+ EGR++F + +Y + P+I+HYGCMVDL +AG L EA+E I M ++PN ++WG+ L
Sbjct: 344 ISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALL 403
Query: 327 AACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386
AC+ HK +MAE IK L + P ND G + ++ ++Y +WE RVRK M ++ V
Sbjct: 404 GACRVHKNVEMAEEAIKHLLEL-DPLND-GYYVVLSNIYAEAGRWEDTARVRKFMKDRQV 461
Query: 387 RKARGSSVIS 396
+K G S I+
Sbjct: 462 KKTPGWSSIT 471
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 97/227 (42%), Gaps = 39/227 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF++M V + +++ +L +C L + +H + + GF
Sbjct: 212 IHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGF------------- 258
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+RN NT+I Y K G + EA FE M R V SWSAMI
Sbjct: 259 -----------------KRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIG 301
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI-VKN 179
G + L+LF +M S G+ P+ +T +L CSH+G L+ + F +
Sbjct: 302 GLAMHGRAEEALRLFSDM-SQVGIEPNGVTFIGLLHACSHMG----LISEGRRFFASMTR 356
Query: 180 EWELNEQIA--TILVDMYAKCGFLKYA-LMVFELMEERNVISWTALI 223
++ + QI +VD+ ++ G L A + + + N + W AL+
Sbjct: 357 DYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALL 403
>gi|297824259|ref|XP_002880012.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325851|gb|EFH56271.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 542
Score = 243 bits (621), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 128/361 (35%), Positives = 212/361 (58%), Gaps = 6/361 (1%)
Query: 36 HHLHSHILKLGFISHVYVATSLLHEYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKS 94
LH ++K G ++ ++LH YV A +LF + + V WN++I G +K
Sbjct: 146 RQLHGRVIKEGLEDDSFIRNTMLHMYVTCGCLVEAWRLFVGMMGFDVVAWNSIIMGLAKC 205
Query: 95 GNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAV 154
G + +A+ F+ MP RN SW++MI+ ++ G + L++FREM + + PD T+ ++
Sbjct: 206 GLIDQAQKLFDEMPQRNGVSWNSMISGFVRNGRFKDALEMFREMQERD-VKPDGFTMVSL 264
Query: 155 LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER 214
L+ C++LG+ G+ H +IV+N +ELN + T L+DMY KCG + L VFE +
Sbjct: 265 LNACAYLGASE--QGRWIHKYIVRNRFELNSIVITALIDMYCKCGCFEEGLKVFECAPTK 322
Query: 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF 274
+ W ++I G A+ G E A+ LF ++ TG++P+ ++F GVLTAC H+G V + ++F
Sbjct: 323 QLSCWNSMILGLANNGCEERAMDLFLELERTGLEPDSVSFIGVLTACAHSGEVHKAGEFF 382
Query: 275 KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
+++ E+Y +EP I+HY CMV++ G AG L+EA +I+ M +E + IIW S LAAC+++
Sbjct: 383 RLMREKYMIEPSIKHYTCMVNVLGGAGLLDEAEALIKKMPVEGDTIIWSSLLAACRKNGN 442
Query: 335 FDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSV 394
+MA+R L+ + P+ G + L+ + Y +E A R LM + + K G S
Sbjct: 443 VEMAKRA-ANCLKNLDPDETCG-YVLMSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSS 500
Query: 395 I 395
I
Sbjct: 501 I 501
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 149/326 (45%), Gaps = 38/326 (11%)
Query: 4 FSQMHRQSVPSDSF----SILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
FS + ++PS F + L ++ T + + + +H++++K G IS A+ +L
Sbjct: 8 FSGVTVPAIPSSGFVSGNTCLRLID--TRCSTMRELKQIHANLIKTGLISDTVAASRVLA 65
Query: 60 EYVVTSF--GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERM--------PL 109
+ +A +F + +N WNT+I+G+S+S A F M P
Sbjct: 66 FCCASPSDRNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQ 125
Query: 110 RNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL-----SGCSHLGSV 164
R ++ ++ AY + G G +L +I EGL D +L GC + +
Sbjct: 126 R--LTYPSVFKAYASLGLARDGRQLHGRVI-KEGLEDDSFIRNTMLHMYVTCGC-LVEAW 181
Query: 165 GLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALIC 224
L +G + N +I++ + AKCG + A +F+ M +RN +SW ++I
Sbjct: 182 RLFVGMMGFDVVAWN---------SIIMGL-AKCGLIDQAQKLFDEMPQRNGVSWNSMIS 231
Query: 225 GSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK-MIDEEYDL 283
G G +DAL +F MQ VKP+ T +L AC + G ++GR K ++ ++L
Sbjct: 232 GFVRNGRFKDALEMFREMQERDVKPDGFTMVSLLNACAYLGASEQGRWIHKYIVRNRFEL 291
Query: 284 EPRIQHYGCMVDLFGKAGFLEEAYEV 309
+ ++D++ K G EE +V
Sbjct: 292 NSIV--ITALIDMYCKCGCFEEGLKV 315
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 102/240 (42%), Gaps = 41/240 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+++F +M + V D F+++ +L +C + +H +I++ F + V T+L+
Sbjct: 243 LEMFREMQERDVKPDGFTMVSLLNACAYLGASEQGRWIHKYIVRNRFELNSIVITALIDM 302
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y F K+F+ P + WN+MI G + +G CE R
Sbjct: 303 YCKCGCFEEGLKVFECAPTKQLSCWNSMILGLANNG--CEER------------------ 342
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF-IVK 178
+ LF E+ GL PD ++ VL+ C+H G V K+ F +++
Sbjct: 343 -----------AMDLFLEL-ERTGLEPDSVSFIGVLTACAHSGEV----HKAGEFFRLMR 386
Query: 179 NEWELNEQIA--TILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSEDA 235
++ + I T +V++ G L A + + M E + I W++L+ G E A
Sbjct: 387 EKYMIEPSIKHYTCMVNVLGGAGLLDEAEALIKKMPVEGDTIIWSSLLAACRKNGNVEMA 446
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 97/200 (48%), Gaps = 12/200 (6%)
Query: 203 YALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM--QATGVKPNEMTFTGVLTA 260
YA +VF + +N W +I G + + E A+S+F M + VKP +T+ V A
Sbjct: 76 YAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKA 135
Query: 261 CVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNV 319
GL +GR+ + ++I E + + I++ M+ ++ G L EA+ + M + +V
Sbjct: 136 YASLGLARDGRQLHGRVIKEGLEDDSFIRNT--MLHMYVTCGCLVEAWRLFVGM-MGFDV 192
Query: 320 IIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRK 379
+ W S + + D A+++ + P+ +G + + + N +++ A + +
Sbjct: 193 VAWNSIIMGLAKCGLIDQAQKLFDEM-----PQRNGVSWNSMISGFVRNGRFKDALEMFR 247
Query: 380 LMLNQNVRKARGSSVISSLS 399
M ++V K G +++S L+
Sbjct: 248 EMQERDV-KPDGFTMVSLLN 266
>gi|255581953|ref|XP_002531775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528611|gb|EEF30631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 498
Score = 243 bits (621), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 130/382 (34%), Positives = 219/382 (57%), Gaps = 6/382 (1%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT-SFGFARKLF 73
D+++ +LK+C++ L +H I+K G + ++ +SL+H Y + S A +
Sbjct: 86 DNYTYTFVLKACSNQKALPEGKQVHCQIIKAGISPNTHIHSSLIHMYTSSGSIVEAECVL 145
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
E E N + N+MI GY G+V +AR F++M ++VASWSA+I G + L
Sbjct: 146 REFSEENTLAKNSMISGYLSKGHVDKARAMFDQMKAKDVASWSAIITGCTKNGMHTEALA 205
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
LF +M+ + L P++ + ++LS C+HLG+ L G+ H +I + +++ +++T L+D
Sbjct: 206 LFEDMMVSHTL-PNESALVSLLSACAHLGA--LHQGRWIHAYIDRIGADMSIRLSTALID 262
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
MYAKCG ++ F M R++++W A+I G A G ++ LFE M A G+ PN +
Sbjct: 263 MYAKCGDIQSGYKFFRKMPRRDIVTWGAIISGFAIYGQAKKCFELFEEMLADGIYPNGVI 322
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
F +L+AC H G V+EG+ YF + + + P I+HYGCMVDL G+AG L+EA E I +M
Sbjct: 323 FVAILSACSHAGYVEEGKLYFNQMMVDLGIRPSIEHYGCMVDLLGRAGRLKEAEEFIISM 382
Query: 314 RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEG 373
+PN +IWGS L+AC+ H + + + + +P + G + L ++ + +
Sbjct: 383 PEKPNSVIWGSMLSACRTHNDLNRGSWAFRHLIEL-EPRS-GDRYKLAGLMFGNAGEKQE 440
Query: 374 AERVRKLMLNQNVRKARGSSVI 395
A ++RK++ +Q + GSS I
Sbjct: 441 ATKIRKMIEDQGMETTSGSSFI 462
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/328 (25%), Positives = 131/328 (39%), Gaps = 71/328 (21%)
Query: 35 IHHLHSHILKLGFISH-VYVATSLLHEYVVTS-FGFARKLFDELPERNAVTWNTMIKGYS 92
+ LH+ + G ++H LL YV S +AR +F+ +P + +NTMI+G
Sbjct: 4 VRQLHAQFVVSGLLNHHSLCGRRLLESYVTMSEISYARSIFERIPYLDVFVYNTMIRGL- 62
Query: 93 KSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIG 152
L YD L ++ L PD T
Sbjct: 63 -----------------------------MLGKRPYDSLLLFNELLLGC--LKPDNYTYT 91
Query: 153 AVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY--------AKC------ 198
VL CS+ L GK H I+K N I + L+ MY A+C
Sbjct: 92 FVLKACSN--QKALPEGKQVHCQIIKAGISPNTHIHSSLIHMYTSSGSIVEAECVLREFS 149
Query: 199 -----------------GFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
G + A +F+ M+ ++V SW+A+I G G +AL+LFE
Sbjct: 150 EENTLAKNSMISGYLSKGHVDKARAMFDQMKAKDVASWSAIITGCTKNGMHTEALALFED 209
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE-EYDLEPRIQHYGCMVDLFGKA 300
M + PNE +L+AC H G + +GR ID D+ R+ ++D++ K
Sbjct: 210 MMVSHTLPNESALVSLLSACAHLGALHQGRWIHAYIDRIGADMSIRLS--TALIDMYAKC 267
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
G ++ Y+ R M +++ WG+ ++
Sbjct: 268 GDIQSGYKFFRKMP-RRDIVTWGAIISG 294
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 75/316 (23%), Positives = 133/316 (42%), Gaps = 75/316 (23%)
Query: 1 MQLFSQMH-RQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+ LF M ++P++S +++ +L +C H L +H++I ++G + ++T+L+
Sbjct: 204 LALFEDMMVSHTLPNES-ALVSLLSACAHLGALHQGRWIHAYIDRIGADMSIRLSTALID 262
Query: 60 EYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y K F ++P R+ VTW +I G++ G +A+ FE
Sbjct: 263 MYAKCGDIQSGYKFFRKMPRRDIVTWGAIISGFAIYG---QAKKCFE------------- 306
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
LF EM++ +G+ P+ + A+LS CSH G++ +
Sbjct: 307 ---------------LFEEMLA-DGIYPNGVIFVAILSACSHA------------GYVEE 338
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ N+ ++VD+ + Y MV L G A R +
Sbjct: 339 GKLYFNQ----MMVDLGIRPSIEHYGCMVDLL--------------GRAGRLKEAE---- 376
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRI-QHYGCMVDLF 297
E + + KPN + + +L+AC ++ G F+ + E LEPR Y +F
Sbjct: 377 -EFIISMPEKPNSVIWGSMLSACRTHNDLNRGSWAFRHLIE---LEPRSGDRYKLAGLMF 432
Query: 298 GKAGFLEEAYEVIRTM 313
G AG +EA + IR M
Sbjct: 433 GNAGEKQEATK-IRKM 447
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 2/154 (1%)
Query: 191 LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250
L++ Y + YA +FE + +V + +I G D+L LF + +KP+
Sbjct: 27 LLESYVTMSEISYARSIFERIPYLDVFVYNTMIRGLMLGKRPYDSLLLFNELLLGCLKPD 86
Query: 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI 310
T+T VL AC + + EG++ I + + P + ++ ++ +G + EA V+
Sbjct: 87 NYTYTFVLKACSNQKALPEGKQVHCQIIKA-GISPNTHIHSSLIHMYTSSGSIVEAECVL 145
Query: 311 RTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
R E N + S ++ D A + Q
Sbjct: 146 REFS-EENTLAKNSMISGYLSKGHVDKARAMFDQ 178
>gi|255563078|ref|XP_002522543.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538234|gb|EEF39843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 530
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 140/406 (34%), Positives = 224/406 (55%), Gaps = 10/406 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHL----HSHILKLGFISHVYVATS 56
M L ++ + D F+ ILK+ T +N+T+ +L H ILK + T+
Sbjct: 128 MNLVRRLVLEGQRPDGFTYSMILKASTSGDNVTLSCNLGSVVHGQILKSEVEPDDVLYTA 187
Query: 57 LLHEYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASW 115
L+ YV + G+ARK+FD + E+N + +MI GY G+V +A + FER ++V +
Sbjct: 188 LVDSYVKSGRVGYARKVFDMMMEKNVICSTSMISGYMNRGSVEDAEEIFERTVEKDVVVF 247
Query: 116 SAMIAAYLNA-GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
+AMI Y + + L+++ EM G P+ T +V+ CS L G +G+ G
Sbjct: 248 NAMIEGYSKSVQTAEKALEVYVEM-QRYGFRPNLSTFASVIGACSVLA--GFEIGQQVQG 304
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
++K E+ N + + L+DMY+KCG ++ A FE M E+NV SW+++I G G ++
Sbjct: 305 QLLKREFFTNVKTGSALIDMYSKCGRIEDARRAFEQMPEKNVFSWSSMIDGYGKNGRPDE 364
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
AL LF MQ ++PN +TF G L+AC H GLV +GR+ F+ ++ EY L+P ++HY CMV
Sbjct: 365 ALQLFHKMQDCCIEPNYVTFLGALSACGHAGLVSKGREIFESMEREYSLKPGMEHYACMV 424
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
DL G+AG L A+E + M +P+ +W + L+AC H +MA V L + E
Sbjct: 425 DLLGRAGSLNLAWEFVMGMPEKPSSDVWAALLSACNLHGNVEMAS-VAANELFKLNAEGR 483
Query: 355 GGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLSV 400
G + + + KW+G VR++M ++ + K GSS + + SV
Sbjct: 484 SGAYVALSNTLAAAGKWDGVTEVREIMKSRGILKDTGSSWVGTESV 529
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 105/377 (27%), Positives = 159/377 (42%), Gaps = 112/377 (29%)
Query: 28 HFNNLTVIH--HLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFDELPERNAVTW 84
H N+ T H +H+HI+K GFI + V+ LL Y+ +AR++FDELP+R +
Sbjct: 52 HINSNTPFHGQKIHAHIVKTGFIPNTNVSIKLLILYLKCGCLKYARQMFDELPQRTLSAY 111
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
N +I GY K G V ++ + R+ L EG
Sbjct: 112 NYLIGGYLKLGLVQDSMNLVRRLVL--------------------------------EGQ 139
Query: 145 TPDQMTIGAVLSGCSHLGSVGLL--MGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLK 202
PD T +L + +V L +G HG I+K+E E ++ + T LVD Y K G +
Sbjct: 140 RPDGFTYSMILKASTSGDNVTLSCNLGSVVHGQILKSEVEPDDVLYTALVDSYVKSGRVG 199
Query: 203 YALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM--------------------- 241
YA VF++M E+NVI T++I G +RG EDA +FE
Sbjct: 200 YARKVFDMMMEKNVICSTSMISGYMNRGSVEDAEEIFERTVEKDVVVFNAMIEGYSKSVQ 259
Query: 242 -----------MQATGVKPNEMTFTGVLTAC------------------------VHTG- 265
MQ G +PN TF V+ AC V TG
Sbjct: 260 TAEKALEVYVEMQRYGFRPNLSTFASVIGACSVLAGFEIGQQVQGQLLKREFFTNVKTGS 319
Query: 266 -LVD---------EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR- 314
L+D + R+ F+ + E+ + + M+D +GK G +EA ++ M+
Sbjct: 320 ALIDMYSKCGRIEDARRAFEQMPEK-----NVFSWSSMIDGYGKNGRPDEALQLFHKMQD 374
Query: 315 --LEPNVIIWGSFLAAC 329
+EPN + + L+AC
Sbjct: 375 CCIEPNYVTFLGALSAC 391
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 108/236 (45%), Gaps = 15/236 (6%)
Query: 140 SNEGLTPDQ----MTIGAVLSGC--SHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
SN L P++ + A LS H+ S G+ H IVK + N ++ L+
Sbjct: 26 SNPILPPNEEYLFRSTAAALSSALQDHINSNTPFHGQKIHAHIVKTGFIPNTNVSIKLLI 85
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
+Y KCG LKYA +F+ + +R + ++ LI G G +D+++L + G +P+ T
Sbjct: 86 LYLKCGCLKYARQMFDELPQRTLSAYNYLIGGYLKLGLVQDSMNLVRRLVLEGQRPDGFT 145
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEY---DLEPRIQHYGCMVDLFGKAGFLEEAYEVI 310
++ +L A V ++ + ++EP Y +VD + K+G + A +V
Sbjct: 146 YSMILKASTSGDNVTLSCNLGSVVHGQILKSEVEPDDVLYTALVDSYVKSGRVGYARKVF 205
Query: 311 RTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366
M +E NVI S ++ + AE + ++ + E D VF + + Y+
Sbjct: 206 DMM-MEKNVICSTSMISGYMNRGSVEDAEEIFERTV-----EKDVVVFNAMIEGYS 255
>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
Length = 1133
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 135/393 (34%), Positives = 222/393 (56%), Gaps = 11/393 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILK-SCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
++LF +M + +++ +I+ +L+ S + L + H ++L+ GF VYV TSL+
Sbjct: 609 VELFRKMQFSFLKAETATIVRVLQASISELGFLNMGKETHGYVLRNGFDCDVYVGTSLID 668
Query: 60 EYVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR----NVAS 114
YV S A+ +FD + RN WN+++ GYS G +A +M ++ +
Sbjct: 669 MYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVT 728
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
W+ MI+ Y G L F +M EG+ P+ +I +L C+ L L GK H
Sbjct: 729 WNGMISGYAMWGCGKEALAFFAQM-QQEGVMPNSASITCLLRACASLSL--LQKGKEIHC 785
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
++N + + +AT L+DMY+K LK A VF ++ + + SW +I G A G ++
Sbjct: 786 LSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKE 845
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
A+S+F MQ GV P+ +TFT +L+AC ++GL+ EG KYF + +Y + PR++HY CMV
Sbjct: 846 AISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMV 905
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
DL G+AG+L+EA+++I TM L+P+ IWG+ L +C+ HK AE K ++ +P N
Sbjct: 906 DLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKL-EPNNS 964
Query: 355 GGVFTLICDLYTMNEKWEGAERVRKLMLNQNVR 387
+ L+ +LY++ +WE + +R+LM VR
Sbjct: 965 AN-YILMMNLYSIFNRWEDMDHLRELMGAAGVR 996
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 142/311 (45%), Gaps = 37/311 (11%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+++F ++H + V DS LK+CT ++ + +H ++K GF VY+ +L++
Sbjct: 508 LEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNF 567
Query: 61 YVVTSFGF--ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y +G A ++F E+P A+ WN I +S + + + F +M + + +A
Sbjct: 568 Y-GRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETAT 626
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I L A + G L MGK HG++++
Sbjct: 627 IVRVLQASISELGF---------------------------------LNMGKETHGYVLR 653
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
N ++ + + T L+DMY K L A VF+ M+ RN+ +W +L+ G + +G EDAL L
Sbjct: 654 NGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRL 713
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
M+ G+KP+ +T+ G+++ G E +F + +E + P C++
Sbjct: 714 LNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQE-GVMPNSASITCLLRACA 772
Query: 299 KAGFLEEAYEV 309
L++ E+
Sbjct: 773 SLSLLQKGKEI 783
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 125/288 (43%), Gaps = 20/288 (6%)
Query: 75 ELPERNAVTWN------TMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLN-AGA 127
+LP++ WN +I Y G+ A F RN W++ + + + AG+
Sbjct: 448 KLPQK----WNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGS 503
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
L++F+E+ +G+ D L C+ + + L G HG ++K ++L+ +
Sbjct: 504 LHIVLEVFKEL-HGKGVVFDSEVYSVALKTCTRVMDIWL--GMEIHGCLIKRGFDLDVYL 560
Query: 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
L++ Y +C L+ A VF M + W I + + + LF MQ + +
Sbjct: 561 RCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFL 620
Query: 248 KPNEMTFTGVLTACV-HTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305
K T VL A + G ++ G++ + ++ +D + + ++D++ K L
Sbjct: 621 KAETATIVRVLQASISELGFLNMGKETHGYVLRNGFDCDVYVG--TSLIDMYVKNHSLTS 678
Query: 306 AYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-VKPE 352
A V M+ N+ W S ++ F+ A R++ Q + +KP+
Sbjct: 679 AQAVFDNMK-NRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPD 725
>gi|357511423|ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355501015|gb|AES82218.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 607
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 141/418 (33%), Positives = 221/418 (52%), Gaps = 40/418 (9%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV- 62
F QM R V + ++I +L++ ++ +H+ LG +V+V +SL+ Y
Sbjct: 94 FLQMGRAGVVPNDYTISTLLRAVISTELDVLVRQVHALAFHLGHYLNVFVGSSLIRAYAG 153
Query: 63 ------------------VTS-------------FGFARKLFDELPERNAVTWNTMIKGY 91
VTS F A+ FD++P+RN ++W T++ GY
Sbjct: 154 LKEEEALGRAFNDISMKDVTSWNALVSSYMELGKFVDAQTAFDQMPQRNIISWTTLVNGY 213
Query: 92 SKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTI 151
K+ V +AR F+ M RNV SW+AMI+ Y+ + LKLF M E P+ T
Sbjct: 214 VKNKQVNKARSVFDDMSERNVVSWTAMISGYVQNKRFVDALKLFVLMFKTE-TRPNHFTF 272
Query: 152 GAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELM 211
+VL C+ GS L+MG H I+K+ + T LVDMYAKCG + A VFE +
Sbjct: 273 SSVLDACA--GSSSLIMGLQLHPCIIKSGIANDVIWLTSLVDMYAKCGDMDAAFGVFESI 330
Query: 212 EERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR 271
++N++SW A+I G A G + AL F+ M+ G P+E+TF VL+ACVH GLV+EG
Sbjct: 331 RDKNLVSWNAIIGGYASHGLATRALEEFDRMKVVGT-PDEVTFVNVLSACVHAGLVEEGE 389
Query: 272 KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKE 331
K+F + +Y ++ ++HY CMVDL+G+AG +EA +I+ M EP+V++WG+ LAAC
Sbjct: 390 KHFTDMLTKYGIQAEMEHYSCMVDLYGRAGRFDEAENLIKNMPFEPDVVLWGALLAACGL 449
Query: 332 HKQFDMAERVIKQALRMVKPENDGGV-FTLICDLYTMNEKWEGAERVRKLMLNQNVRK 388
H ++ E A R+ + E+ V ++++ + W +R M + ++K
Sbjct: 450 HSNLELGEYA---AERIRRLESSHPVSYSVLSKIQGEKGVWSSVNELRDTMKERGIKK 504
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 87/349 (24%), Positives = 151/349 (43%), Gaps = 39/349 (11%)
Query: 30 NNLTVIHHL-HSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPERNAVTWNTMI 88
NN+ H L ++L +S V T+ L G LFD++P ++AV+WN M+
Sbjct: 22 NNVKQAHKLLDENLLSCNIVSWNMVMTAYLQH---NQIGPVHDLFDKMPLKDAVSWNIML 78
Query: 89 KGYSKSGNVCEARDFFERMP--------------------------LRNVASWSAMIAAY 122
G+ ++ N F +M +R V + + + Y
Sbjct: 79 SGFQRTRNSEGLYRCFLQMGRAGVVPNDYTISTLLRAVISTELDVLVRQVHALAFHLGHY 138
Query: 123 LNAGAYDPGLKLFREMISNEGLTP--DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
LN ++ + + E L + +++ V S + L S + +GK ++
Sbjct: 139 LNVFVGSSLIRAYAGLKEEEALGRAFNDISMKDVTS-WNALVSSYMELGKFVDAQTAFDQ 197
Query: 181 WELNEQIA-TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
I+ T LV+ Y K + A VF+ M ERNV+SWTA+I G DAL LF
Sbjct: 198 MPQRNIISWTTLVNGYVKNKQVNKARSVFDDMSERNVVSWTAMISGYVQNKRFVDALKLF 257
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+M T +PN TF+ VL AC + + G + I + + + +VD++ K
Sbjct: 258 VLMFKTETRPNHFTFSSVLDACAGSSSLIMGLQLHPCIIKS-GIANDVIWLTSLVDMYAK 316
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348
G ++ A+ V ++R + N++ W + + H +A R +++ RM
Sbjct: 317 CGDMDAAFGVFESIR-DKNLVSWNAIIGGYASHG---LATRALEEFDRM 361
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 80/371 (21%), Positives = 151/371 (40%), Gaps = 49/371 (13%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF M + + F+ +L +C ++L + LH I+K G + V TSL+
Sbjct: 254 LKLFVLMFKTETRPNHFTFSSVLDACAGSSSLIMGLQLHPCIIKSGIANDVIWLTSLVDM 313
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL---RNVASWS 116
Y A +F+ + ++N V+WN +I GY+ G A + F+RM + + ++
Sbjct: 314 YAKCGDMDAAFGVFESIRDKNLVSWNAIIGGYASHGLATRALEEFDRMKVVGTPDEVTFV 373
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKS----- 171
+++A ++AG + G K F +M++ G+ + H + L G++
Sbjct: 374 NVLSACVHAGLVEEGEKHFTDMLTKYGIQAEM----------EHYSCMVDLYGRAGRFDE 423
Query: 172 AHGFIVKNEWELNEQIATILVDMYAKCGFL------KYALMVFELMEERNVISWTALICG 225
A I +E + + L+ A CG +YA +E + +S++ L
Sbjct: 424 AENLIKNMPFEPDVVLWGALL---AACGLHSNLELGEYAAERIRRLESSHPVSYSVLSKI 480
Query: 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI---DEEYD 282
+G L + M+ G+K T C +D + + I +
Sbjct: 481 QGEKGVWSSVNELRDTMKERGIKKQ----TPGDKNCAQFSKLDSIKTKIEFILIASNPFK 536
Query: 283 LEP-----RIQHYGCMVDLF---------GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
P I+ Y C +LF G + ++ +I+ M EP+V +W + L+
Sbjct: 537 NSPLHGNDYIKAYMCKGNLFLSYIWTYIDGILEVVATSFVLIKNMSFEPDVPLWDALLST 596
Query: 329 CKEHKQFDMAE 339
C H + E
Sbjct: 597 CGLHSNLKLGE 607
>gi|345505230|gb|AEN99839.1| chlororespiratory reduction 4 [Nasturtium officinale]
Length = 614
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 120/327 (36%), Positives = 198/327 (60%), Gaps = 4/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A+ LF +P R+ VTW TMI GY+K G V +A+ F++MP R+V ++++M+A Y+ +
Sbjct: 272 AKDLFHVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNRHH 331
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L++F +M LTPD+ T+ VLS + LG + M H +IV+ ++ L ++
Sbjct: 332 MEALEIFSDMEKESHLTPDETTLVIVLSAIAQLGQLSKAM--DMHLYIVEKQFYLGGKLG 389
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+DMY+KCG ++ A+ VFE +E +++ W A+I G A G E A ++ ++ ++
Sbjct: 390 VALIDMYSKCGSIQQAMCVFEGIENKSIDHWNAMIGGLAIHGLGESAFNILLEIERRSIE 449
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+ +TF GVL AC H+GLV EG F+++ ++ +EPR+QHYGCMVDL + G +E A
Sbjct: 450 PDYITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDLLSRCGSIELAKN 509
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+I M +EPN +IW +FL AC HK+F++ E V K + ++ + + L+ ++Y
Sbjct: 510 LIEEMPIEPNDVIWRTFLTACNHHKEFEIGELVAKHLI--LQAGYNPSSYVLLSNMYASF 567
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
+W+ VR +M + ++K G S I
Sbjct: 568 GRWKDVRNVRTMMKERKLQKVPGCSWI 594
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 159/309 (51%), Gaps = 19/309 (6%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV- 62
F M + D FS +LK+C+ L +H + K G S +++ L+ Y+
Sbjct: 110 FCLMLENGISVDKFSFSLVLKACSRLGFLKGGMQIHGFLRKTGIWSDLFLQNCLIGLYLK 169
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP--LRNVASWSAMIA 120
GFAR++FD +P+R++V++N+MI GY K G + AR+ F+ MP ++N+ SW++MI+
Sbjct: 170 CGCLGFARQIFDRMPQRDSVSYNSMIDGYIKCGLIESARELFDLMPREMKNLISWNSMIS 229
Query: 121 AYLN-AGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y + + KLF EM + ++ + + G V G M + F V
Sbjct: 230 GYAQTSDGVNIASKLFAEMPEKDLISWNSLIYGYVKHG---------RMEDAKDLFHVMP 280
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
++ ++D YAK GF+ A +F+ M R+V+++ +++ G + +AL +F
Sbjct: 281 RRDV--VTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNRHHMEALEIF 338
Query: 240 -EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLF 297
+M + + + P+E T VL+A G + + + ++++++ L ++ ++D++
Sbjct: 339 SDMEKESHLTPDETTLVIVLSAIAQLGQLSKAMDMHLYIVEKQFYLGGKLG--VALIDMY 396
Query: 298 GKAGFLEEA 306
K G +++A
Sbjct: 397 SKCGSIQQA 405
>gi|302780855|ref|XP_002972202.1| hypothetical protein SELMODRAFT_96876 [Selaginella moellendorffii]
gi|300160501|gb|EFJ27119.1| hypothetical protein SELMODRAFT_96876 [Selaginella moellendorffii]
Length = 485
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 128/356 (35%), Positives = 202/356 (56%), Gaps = 7/356 (1%)
Query: 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFDELPERNA 81
L SC+ +L +H + GF + V+V +L++ Y AR F+ + ++
Sbjct: 2 LCSCSGLRDLEQGKSIHDRVAADGFDTQVFVGNALVNMYSKCRRLDLARAAFERIDSKDV 61
Query: 82 VTWNTMIKGYSKSGNVCEARD--FFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI 139
V+WN+MI +S+ G EA + F+RM RNV SWS +IAA G ++LF M
Sbjct: 62 VSWNSMIAAHSQLGGSDEALETAVFDRMERRNVVSWSGLIAALAEHGRGRDAIELFHRM- 120
Query: 140 SNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG 199
+G+ P+++T+ +VL C+ G++ G+ H + +E +A LV+MY KCG
Sbjct: 121 DLDGIQPNEVTLLSVLEACASTGAIA--EGRRTHARVSGCGFEAETNVANALVNMYGKCG 178
Query: 200 FLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLT 259
L A VF+ M RNV+SWTA++ G AH G++E+A +F+ M G++PN +TF VL
Sbjct: 179 HLGSARTVFDAMTWRNVVSWTAMLAGYAHHGHTEEARRVFKAMALEGIQPNVITFVSVLF 238
Query: 260 ACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNV 319
C H G+V +G + F ++ ++ + P +HYGC++DL G+AG+LEEA E++RTM +EP+
Sbjct: 239 NCSHAGVVSDGLEQFHIMVGDFGIVPVTEHYGCVIDLLGRAGWLEEAEELLRTMPVEPDK 298
Query: 320 IIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAE 375
W S L ACK H D A+R+ K A + P + L+ ++YT E+ E
Sbjct: 299 AAWNSLLGACKVHSHTDRAKRIAKLACDLALP-FASAPYVLLSNMYTDEEQQSDPE 353
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 5/160 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF +M + + ++L +L++C + H+ + GF + VA +L++
Sbjct: 114 IELFHRMDLDGIQPNEVTLLSVLEACASTGAIAEGRRTHARVSGCGFEAETNVANALVNM 173
Query: 61 Y-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR----NVASW 115
Y G AR +FD + RN V+W M+ GY+ G+ EAR F+ M L NV ++
Sbjct: 174 YGKCGHLGSARTVFDAMTWRNVVSWTAMLAGYAHHGHTEEARRVFKAMALEGIQPNVITF 233
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155
+++ +AG GL+ F M+ + G+ P G V+
Sbjct: 234 VSVLFNCSHAGVVSDGLEQFHIMVGDFGIVPVTEHYGCVI 273
>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 142/399 (35%), Positives = 220/399 (55%), Gaps = 39/399 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+QL+S+M +S+ D++ + ILK+C L +HS LKLGF S+ V ++
Sbjct: 122 IQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIM-- 179
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP----LRNVASWS 116
EL Y K G + +AR FE MP ++ W+
Sbjct: 180 --------------EL--------------YGKCGELGDARRVFEEMPEDVVAKDTVCWT 211
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
AMI ++ + L+ FR M E + P++ TI VLS CS LG+ L +G+ H ++
Sbjct: 212 AMIDGFVRNEETNRALEAFRGM-QGENVRPNEFTIVCVLSACSQLGA--LEIGRWVHSYM 268
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
K E ELN + L++MY++CG + A VF+ M++R+VI++ +I G + G S A+
Sbjct: 269 RKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAI 328
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
LF +M ++P +TF GVL AC H GLVD G + F + +Y +EP+I+HYGCMVDL
Sbjct: 329 ELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDL 388
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
G+ G LEEAY++IRTM++ P+ I+ G+ L+ACK HK ++ E+V K+ + + D G
Sbjct: 389 LGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELED--RGQADSG 446
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ +Y + KW+ A +VR M ++K G S I
Sbjct: 447 TYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSI 485
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 94/222 (42%), Gaps = 14/222 (6%)
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
DQ I ++L H+ V + H +++N + + L+ +KC + YA
Sbjct: 38 DQKQIISLLQRSRHINQVLPI-----HAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASR 92
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
+F+ NV +TALI G G +A+ L+ M + P+ +L AC
Sbjct: 93 IFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLA 152
Query: 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR---LEPNVIIWG 323
+ EGR+ + R+ M +L+GK G L +A V M + + + W
Sbjct: 153 LREGREVHSRALKLGFSSNRLVRLRIM-ELYGKCGELGDARRVFEEMPEDVVAKDTVCWT 211
Query: 324 SFLAACKEHKQFDMAERVIKQALRMVKPEN-DGGVFTLICDL 364
+ + +++ + A +A R ++ EN FT++C L
Sbjct: 212 AMIDGFVRNEETNRA----LEAFRGMQGENVRPNEFTIVCVL 249
>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 611
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 134/394 (34%), Positives = 217/394 (55%), Gaps = 34/394 (8%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHF-NNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
F M R +V + F+ +LKSC + V H+ LK GF + YV+ +L+H Y
Sbjct: 122 FFPLMLRAAVAPNKFTFPFLLKSCAALPGSPDVGLQAHAAALKFGFAADHYVSNTLIHMY 181
Query: 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+ FG +G + +AR+ FERMP + +WSAMI
Sbjct: 182 --SCFG--------------------------AGFLGDARNVFERMPRESAVTWSAMIGG 213
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ AG + LFR M G+ PD++T+ VL+ + L + + F+ +
Sbjct: 214 YVRAGLSSDAVVLFRGM-QVSGVRPDEVTVIGVLA--AAADLGALELTRWVGRFVEREGI 270
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ + L+D AKCG + A+ VFE MEER V+SWT++I A G ++A+ +FE
Sbjct: 271 GKSVTLCNALIDTLAKCGDVDGAVAVFEGMEERTVVSWTSVIDALAMEGRGKEAVGVFEE 330
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M+A GV P+++ F GVLTAC H G+VDEGR YF + EY +EP+I+HYGCMVD+FG+AG
Sbjct: 331 MKAVGVLPDDVAFIGVLTACSHAGMVDEGRGYFDSMKTEYGIEPKIEHYGCMVDMFGRAG 390
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
+E+ E +R M ++PN IIW + +AAC+ H + ++ E + + L P ++ + ++
Sbjct: 391 MVEQGLEFVRAMPMKPNPIIWRTLVAACRAHGRLELGESITRNLLNEF-PAHEAN-YVML 448
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y + ++W+ +R+ M + ++K G S++
Sbjct: 449 SNVYALTQRWKEKSEIRREMSKRGIKKVPGCSLV 482
>gi|226501952|ref|NP_001151797.1| tetratricopeptide-like helical [Zea mays]
gi|195649749|gb|ACG44342.1| tetratricopeptide-like helical [Zea mays]
Length = 460
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 137/398 (34%), Positives = 219/398 (55%), Gaps = 8/398 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCT--HFNNLTVIHHLHSHILKLGFISHVYVATSLL 58
+ LFS++ V + F+ +L+S T V LH+ KLG S+V+V ++LL
Sbjct: 26 LALFSRVLAGGVAPNEFTFGTVLRSATALRVRAPRVGVQLHACAAKLGLCSNVFVGSALL 85
Query: 59 HEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
Y + + A++ D+ E N V++ +I G K+G EA F RMP RNV SW+A
Sbjct: 86 DHYAKMGAMTEAQRALDDTREPNVVSYTALIAGLLKNGMFDEADRLFRRMPERNVVSWNA 145
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MI Y AG + + LF EM G++P++ T VL+ + G++G+ G+S H +
Sbjct: 146 MIGGYSQAGLGEEAVNLFLEMCRG-GVSPNESTFPCVLTSVASAGTLGV--GRSIHASAI 202
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
K +L+ I LV YA+CG L+ +++ F+ + +NV+SW ALICG A G E+AL
Sbjct: 203 KFLGKLDVYIGNSLVSFYARCGSLEDSVLAFKKINRKNVVSWNALICGYAQNGKGEEALD 262
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
+ MM+ATG+KP+ +T G+L C HTGLVDEG FK + E + +HY C+VDL
Sbjct: 263 AYRMMRATGLKPDNLTLLGLLFGCNHTGLVDEGYALFKTAEREQPGILKPEHYACVVDLL 322
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
+A +EA + + EP + W + L C+ H +AE V K+ +R + P+ D
Sbjct: 323 SRAKRFDEARRFLEELPFEPGIGFWKALLGGCQIHWNSKLAESVAKR-IRALDPK-DTSS 380
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ ++Y+ + W+ VR+ + + +++ G S I
Sbjct: 381 YILLSNVYSASGSWQSVSMVRREIKEKGLKRITGCSWI 418
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 6/137 (4%)
Query: 211 MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
M R+VIS TA I G DAL+LF + A GV PNE TF VL + T L
Sbjct: 1 MPHRDVISATAAIGALTRGGRHRDALALFSRVLAGGVAPNEFTFGTVLRSA--TALRVRA 58
Query: 271 RKY---FKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
+ + L + ++D + K G + EA + R EPNV+ + + +A
Sbjct: 59 PRVGVQLHACAAKLGLCSNVFVGSALLDHYAKMGAMTEAQRALDDTR-EPNVVSYTALIA 117
Query: 328 ACKEHKQFDMAERVIKQ 344
++ FD A+R+ ++
Sbjct: 118 GLLKNGMFDEADRLFRR 134
>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
Length = 675
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 138/402 (34%), Positives = 223/402 (55%), Gaps = 33/402 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF +M R +V D +++ ++ +C ++ + +HS +
Sbjct: 181 LELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDD---------------- 224
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
GF+ L N +I YSK G+V A FE + ++V SW+ +I
Sbjct: 225 -DDDDHGFSSSL---------KIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIG 274
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN- 179
Y + Y L LF+EM+ + G P+ +T+ +VL C+HLG++ + G+ H +I K
Sbjct: 275 GYTHTNLYKEALLLFQEMLRS-GECPNDVTLLSVLPACAHLGAIDI--GRWIHVYIDKKL 331
Query: 180 EWELNE-QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ NE + T L+DMYAKCG ++ A VF M R++ SW A+I G A G + A L
Sbjct: 332 KGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDL 391
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F M+ V+P+++TF G+L+AC H+GL+D GR+ FK + ++Y+L P+++HYGCM+DL G
Sbjct: 392 FSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLG 451
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+G +EA E+I TM +EP+ +IW S L ACK+H ++AE Q L ++PEN G +
Sbjct: 452 HSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAES-FAQKLIKIEPENSGS-Y 509
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLSV 400
L+ ++Y +WE RVR ++ + ++K G S I SV
Sbjct: 510 VLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDSV 551
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 110/370 (29%), Positives = 181/370 (48%), Gaps = 43/370 (11%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS-FGFARKLF 73
+S+S +LKSC +H+ +LKLG YV TSL+ Y ARK+F
Sbjct: 63 NSYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVF 122
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
D R+ V+ +I GY+ G+ AR F+ + R+V SW+AMI Y+ G Y+ L+
Sbjct: 123 DASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALE 182
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK----NEWELNEQIAT 189
LF+EM+ + PD+ T+ +V+S C+ GS+ L G+ H ++ + + + +I
Sbjct: 183 LFKEMMRT-NVRPDEGTLVSVVSACAQSGSIEL--GRQVHSWVDDDDDDHGFSSSLKIVN 239
Query: 190 ILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP 249
L+D+Y+KCG ++ A +FE + ++V+SW LI G H ++AL LF+ M +G P
Sbjct: 240 ALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECP 299
Query: 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD-LEPRIQHYGCMVDLFGKAGFLEEAYE 308
N++T VL AC H G +D GR ID++ + ++D++ K G +E A++
Sbjct: 300 NDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQ 359
Query: 309 VIRTM----------------------------------RLEPNVIIWGSFLAACKEHKQ 334
V +M R+EP+ I + L+AC
Sbjct: 360 VFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGL 419
Query: 335 FDMAERVIKQ 344
D+ ++ K
Sbjct: 420 LDLGRQIFKS 429
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 150/304 (49%), Gaps = 21/304 (6%)
Query: 68 FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERM----PLRNVASWSAMIAAYL 123
+A +F+ + E N + WNTM++G++ S + A + + RM L N S+ ++ +
Sbjct: 16 YAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCA 75
Query: 124 NAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV---GLLMGKSAHGFIVKNE 180
+ A++ G ++ +++ G D+ +++S + G + + S+H +V
Sbjct: 76 KSKAFEEGRQIHAQVL-KLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVS-- 132
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
T L+ YA G + A VF+ + ER+V+SW A+I G G E+AL LF+
Sbjct: 133 -------CTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFK 185
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRK---YFKMIDEEYDLEPRIQHYGCMVDLF 297
M T V+P+E T V++AC +G ++ GR+ + D+++ ++ ++DL+
Sbjct: 186 EMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLY 245
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
K G +E A+ + + + +V+ W + + + A + ++ LR + ND +
Sbjct: 246 SKCGDVETAFGLFEGLSCK-DVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTL 304
Query: 358 FTLI 361
+++
Sbjct: 305 LSVL 308
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 77/329 (23%), Positives = 137/329 (41%), Gaps = 33/329 (10%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKL--GFISHVYVATSLLHE 60
LF +M R + ++L +L +C H + + +H +I K G + + TSL+
Sbjct: 288 LFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDM 347
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA----SW 115
Y A ++F+ + R+ +WN MI G++ G A D F RM V ++
Sbjct: 348 YAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITF 407
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
+++A ++G D G ++F+ M + LTP G ++ H G + K A
Sbjct: 408 VGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSG-----LFKEAEEM 462
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELM---EERNVISWTALICGSAHRGYS 232
I E + I L+ K G L+ A + + E N S+ L A G
Sbjct: 463 IHTMPMEPDGVIWCSLLKACKKHGNLELAESFAQKLIKIEPENSGSYVLLSNIYATAGRW 522
Query: 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG-----RKYFKMIDEEYDLEPRI 287
ED + ++ G+K + + + VH ++ + R+ + M+ EE D++
Sbjct: 523 EDVARVRGVLNGKGMKKVPGCSSIEVDSVVHEFIIGDKLHPRRREIYHML-EEMDVQ--- 578
Query: 288 QHYGCMVDLFGKAGFLEEAYEVIRTMRLE 316
+AGF + EV++ M E
Sbjct: 579 ---------LEEAGFAPDTSEVLQEMEEE 598
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 91/210 (43%), Gaps = 27/210 (12%)
Query: 201 LKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260
L YA+ VFE ++E N++ W ++ G A AL ++ M + G PN +F +L +
Sbjct: 14 LPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKS 73
Query: 261 CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD---------LFGKAGFLEEAYEVIR 311
C + +EGR+ + ++ GC +D ++ + G LE+A +V
Sbjct: 74 CAKSKAFEEGRQ----------IHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFD 123
Query: 312 TMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKW 371
+V+ + + F A +V + E D + + Y N ++
Sbjct: 124 ASS-HRDVVSCTALITGYASRGDFRSARKVFDEI-----TERDVVSWNAMITGYVENGRY 177
Query: 372 EGAERVRKLMLNQNVRKARGS--SVISSLS 399
E A + K M+ NVR G+ SV+S+ +
Sbjct: 178 EEALELFKEMMRTNVRPDEGTLVSVVSACA 207
>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Brachypodium distachyon]
Length = 804
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 131/399 (32%), Positives = 220/399 (55%), Gaps = 10/399 (2%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKL--GFISH--VYVATSL 57
+LF +M + +P D F+ +L +C + +H ++L F+ + V +L
Sbjct: 282 ELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNAL 341
Query: 58 LHEYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
+ Y + A K+FD + ++ V+WNT++ GY +SG + A F+ MP ++ SW
Sbjct: 342 VTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWM 401
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
M++ Y++ G + LKLF +M S E + P T ++ C LG+ L GK H +
Sbjct: 402 VMVSGYVHGGLAEDALKLFNQMRS-EDVKPCDYTYAGAVAACGELGA--LKHGKQLHAHL 458
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
V+ +E + L+ MYA+CG +K A +VF +M + +SW A+I G+ +AL
Sbjct: 459 VQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREAL 518
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
LF+ M A G+ P+ ++F +LTAC H GLVD+G +YF+ ++ ++ + P HY ++DL
Sbjct: 519 ELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDL 578
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
G+AG + EA ++I+TM EP IW + L+ C+ + ++ Q +MV PE+D G
Sbjct: 579 LGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQLFKMV-PEHD-G 636
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ + Y+ +W A RVRKLM ++ V+K G S I
Sbjct: 637 TYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWI 675
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 99/366 (27%), Positives = 175/366 (47%), Gaps = 50/366 (13%)
Query: 10 QSVPSDSFSILHILKSCTHFNNLTVIH--HLHSHILKLGFISHVYVATSLLHEYV-VTSF 66
S+ D +S +L + ++L V H LH + KLG + + V+ +L+ Y+ +
Sbjct: 153 DSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAP 212
Query: 67 GF---ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL 123
G ARK+ DE+PE++ +TW T++ G+ + G+V AR FE + W+AMI+ Y+
Sbjct: 213 GVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYV 272
Query: 124 NAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWEL 183
+G +LFR M+S + PD+ T ++LS C++ G L GKS HG ++ + +
Sbjct: 273 QSGMCAEAFELFRRMVSKR-IPPDEFTFTSLLSACANAGF--FLHGKSVHGQFIRLQPDF 329
Query: 184 NEQIA----TILVDMYAKCGFLKYALMVFELMEERNVISWTA------------------ 221
+ A LV +Y+K G + A +F+ M ++V+SW
Sbjct: 330 VPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIF 389
Query: 222 -------------LICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
++ G H G +EDAL LF M++ VKP + T+ G + AC G +
Sbjct: 390 KEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALK 449
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNV--IIWGSFL 326
G++ + + E ++ ++ + G +++A V M PNV + W + +
Sbjct: 450 HGKQLHAHL-VQCGFEASNSAGNALLTMYARCGAVKDARLVFLVM---PNVDSVSWNAMI 505
Query: 327 AACKEH 332
+A +H
Sbjct: 506 SALGQH 511
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 83/357 (23%), Positives = 156/357 (43%), Gaps = 47/357 (13%)
Query: 32 LTVIHHLHSHILKLGFI---SHVYVATSLLHEYVVT-SFGFARKLFDELPERNAVTWNTM 87
L + LH+ +L + SH ++ LLH Y ++ LF P A T ++
Sbjct: 38 LRTLRCLHARLLTAALLHDPSHPHLTLRLLHLYTLSPDLATPAVLFRADPGPVAAT--SL 95
Query: 88 IKGYSKSGNVCEARDFFERMPL--RNVASWSAMIAAYLNAGAYDPGLKLFREMI-SNEGL 144
+ Y+ +G + ++ FF+ +P+ R+ +AMI+A+ A P + +FR ++ S++ L
Sbjct: 96 VSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLASDDSL 155
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC---GFL 201
PD + ++LS + + + H + K ++ L+ +Y KC G
Sbjct: 156 RPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAPGVT 215
Query: 202 KYALMVFELMEERNVISWT-------------------------------ALICGSAHRG 230
+ A V + M E++ ++WT A+I G G
Sbjct: 216 RDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSG 275
Query: 231 YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKY---FKMIDEEYDLEPRI 287
+A LF M + + P+E TFT +L+AC + G G+ F + ++ E +
Sbjct: 276 MCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAAL 335
Query: 288 QHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
+V L+ K+G + A ++ +M L+ +V+ W + L+ E D A R+ K+
Sbjct: 336 PVNNALVTLYSKSGKIAVATKIFDSMTLK-DVVSWNTILSGYIESGCLDNAARIFKE 391
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 80/170 (47%), Gaps = 5/170 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF+QM + V ++ + +C L LH+H+++ GF + +LL
Sbjct: 417 LKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTM 476
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNV----ASW 115
Y + AR +F +P ++V+WN MI + G+ EA + F++M + + S+
Sbjct: 477 YARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISF 536
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVG 165
++ A +AG D G + F M + G++P + ++ G +G
Sbjct: 537 LTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIG 586
>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 742
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 133/395 (33%), Positives = 222/395 (56%), Gaps = 7/395 (1%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV- 62
F+ M + D +++ +L +C +L LH + + + +L+ Y
Sbjct: 225 FNSMLSDGIAPDEVTVIGMLSACGQLKDLNFGCSLHMLVGDKRMLMSDKLVVALIDMYAK 284
Query: 63 VTSFGFARKLFDELPE-RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
G AR++FD L R WN MI GY K G+V AR F++M +V +++++I
Sbjct: 285 CGDTGRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQMEDHDVITFNSLITG 344
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y++ G L LF +M GL D T+ +L+ + LG+ L G++ H I +
Sbjct: 345 YIHGGRLREALLLFTKM-RRHGLGADNFTMVGLLTASASLGA--LPQGRALHACIEQRLV 401
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
E + + T L+DMY KCG ++ A++ F+ M R+V +W+A+I G A G + AL F
Sbjct: 402 ERDVYLGTALLDMYMKCGRVEEAMVAFKQMSVRDVHTWSAMIGGLAFNGMGKAALEHFFW 461
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M+ G N +T+ VLTAC H+ L+DEGR YF + +++ P+I+HYGCM+DL G++G
Sbjct: 462 MKCDGFHANSVTYIAVLTACSHSCLLDEGRLYFDEMRLLHNIRPQIEHYGCMIDLLGRSG 521
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L+EA ++++TM ++PN +IW S L+AC+ HK D+A+ L++ +P D V+ +
Sbjct: 522 LLDEAMDLVQTMPMQPNAVIWASILSACRVHKNVDLAQNAAHHLLKL-EPAED-AVYVQM 579
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
++Y + +WE A ++R+LM + V+K G S I+
Sbjct: 580 YNIYIDSRQWEDASKIRRLMEKRGVKKTAGYSSIA 614
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 99/361 (27%), Positives = 169/361 (46%), Gaps = 40/361 (11%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHH-LHSHILKLGFISHV-YVATSLLHE 60
L+ +MH VP D+F+ + K C ++ LH+ + S V +A+ ++H
Sbjct: 90 LYRRMHGVDVPPDAFTFHFLFKCCARGGAHVLLGRMLHAACFRTLLPSAVPLIASPIIHM 149
Query: 61 YVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y G AR+ FDE ++ V W T+I G +K G + +AR R P+RNV +W+ +I
Sbjct: 150 YAELGLPGDARRAFDEASVKDVVAWTTVISGLAKMGLLDDARRLLARAPVRNVVTWTGLI 209
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y AG + F M+S +G+ PD++T+ +LS C L + G S H +
Sbjct: 210 SGYSRAGRAAEAVDCFNSMLS-DGIAPDEVTVIGMLSACGQLKDLNF--GCSLHMLVGDK 266
Query: 180 EWELNEQIATILVDMYAKC--------------------------------GFLKYALMV 207
+++++ L+DMYAKC G + A +
Sbjct: 267 RMLMSDKLVVALIDMYAKCGDTGRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIARSL 326
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
F+ ME+ +VI++ +LI G H G +AL LF M+ G+ + T G+LTA G +
Sbjct: 327 FDQMEDHDVITFNSLITGYIHGGRLREALLLFTKMRRHGLGADNFTMVGLLTASASLGAL 386
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
+GR I++ +E + ++D++ K G +EEA + M + +V W + +
Sbjct: 387 PQGRALHACIEQRL-VERDVYLGTALLDMYMKCGRVEEAMVAFKQMSVR-DVHTWSAMIG 444
Query: 328 A 328
Sbjct: 445 G 445
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 96/228 (42%), Gaps = 45/228 (19%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF++M R + +D+F+++ +L + L LH+ I + VY+ T+LL Y+
Sbjct: 357 LFTKMRRHGLGADNFTMVGLLTASASLGALPQGRALHACIEQRLVERDVYLGTALLDMYM 416
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
K G V EA F++M +R+V +WSAMI
Sbjct: 417 ------------------------------KCGRVEEAMVAFKQMSVRDVHTWSAMIGGL 446
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
G L+ F M +G + +T AVL+ CSH L+ + G + +E
Sbjct: 447 AFNGMGKAALEHFFWM-KCDGFHANSVTYIAVLTACSH----SCLLDE---GRLYFDEMR 498
Query: 183 LNEQIAT------ILVDMYAKCGFLKYALMVFELME-ERNVISWTALI 223
L I ++D+ + G L A+ + + M + N + W +++
Sbjct: 499 LLHNIRPQIEHYGCMIDLLGRSGLLDEAMDLVQTMPMQPNAVIWASIL 546
>gi|414864742|tpg|DAA43299.1| TPA: hypothetical protein ZEAMMB73_867482 [Zea mays]
Length = 501
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 137/370 (37%), Positives = 219/370 (59%), Gaps = 22/370 (5%)
Query: 43 LKLGFI-SHVYVATSLLHEYVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEA 100
L+LG + + ++VA SL+H Y + A ++FDE+P N V+WN ++ GY+K ++ A
Sbjct: 88 LRLGLLPADLHVANSLVHMYAACALPDHANRVFDEIPRPNLVSWNALLDGYAKCHDLPAA 147
Query: 101 RDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNE------------GLTPDQ 148
R F RMP R+V SWSAMI + G + L LF EM+ N G +
Sbjct: 148 RKVFARMPQRDVVSWSAMIDGCVKCGEHREALALF-EMMENAAARSAEEEDGGGGARAND 206
Query: 149 MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVF 208
+T+ +VL C+ LG L G+ AH + + + LN ++AT LVDMYAKCG + A+ VF
Sbjct: 207 VTMVSVLGACAQLGD--LERGRRAHRCLRERGFALNLRLATSLVDMYAKCGAISEAMEVF 264
Query: 209 EL--MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
+E +V+ W A+I G A G + ++ +F MQ GV P+E+T+ +L+AC H GL
Sbjct: 265 WAVPVESTDVLIWNAVIGGLAVHGMATKSVEIFLEMQRAGVAPDEITYLCLLSACAHGGL 324
Query: 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
VDE ++F+ + E L P ++HY C+VD+ G+AG LEE Y V+++M ++P+V + G+ L
Sbjct: 325 VDEAWEFFRSL-EAQGLRPHVEHYACLVDVLGRAGRLEEVYGVVKSMPMKPSVSVLGALL 383
Query: 327 AACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386
AC H ++ E V+ + L ++P++DG L ++Y + +W+ A++ RK+M ++ V
Sbjct: 384 NACHLHGWVELGE-VLGRRLVQLQPDHDGRYIGL-SNIYAVARRWQEAKKARKVMEDRGV 441
Query: 387 RKARGSSVIS 396
+K G S I
Sbjct: 442 KKVPGFSEID 451
>gi|345505234|gb|AEN99841.1| chlororespiratory reduction 4, partial [Raphanus sativus]
Length = 577
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 119/327 (36%), Positives = 195/327 (59%), Gaps = 4/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A+ LFD +P R+ VTW MI GY K G V +A+ F++MP R+V ++++M++ ++ +
Sbjct: 243 AKGLFDVMPRRDVVTWAIMIDGYGKLGLVHQAKTLFDQMPHRDVVAYNSMMSGFVQNRYH 302
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L++F M L+PD+ T+ VLS + LG L H +IV+ + L+ ++
Sbjct: 303 IEALEVFNHMEKESHLSPDETTLVIVLSAIAQLGR--LTKAIDMHLYIVEKRFLLSGKLG 360
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+DMY+KCG +++A+ VFE +E +++ W A+I G A G E A + ++ +K
Sbjct: 361 VALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLLQIERRSIK 420
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+ +TF GVL AC H+GLV EG F+++ ++ +EPR+QHYGCMVD+ ++G +E A
Sbjct: 421 PDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILARSGSIELAKN 480
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+I M +EPN +IW +FL AC HK+F+ E V K + ++ + + L+ ++Y N
Sbjct: 481 LIEEMPIEPNDVIWRTFLNACSHHKEFETGELVAKHLI--LQAGYNPSSYVLLSNMYASN 538
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
W+ RVR +M + + K G S I
Sbjct: 539 GMWKDVRRVRTMMKEKKIEKLPGCSWI 565
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 98/365 (26%), Positives = 170/365 (46%), Gaps = 35/365 (9%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF M V D FS+ +LK+C+ +H ++K S +++ L+ Y+
Sbjct: 80 LFCLMLENGVLVDKFSMSLVLKACSRLGFAKEGMQVHGFLIKSRTWSDLFLQNCLIGLYL 139
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL--RNVASWSAMI 119
GFAR++FD +P+R++V++N+MI GY K G V A + F+ MP RN+ +W++MI
Sbjct: 140 KCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLVESAGELFDLMPREKRNLITWNSMI 199
Query: 120 AAYLN-AGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
Y A + KLF EM + ++ + M G V G + GL +
Sbjct: 200 GGYAQRADGVNVASKLFDEMPEKDLISWNSMIGGYVKHGRIE-DAKGLFDVMPRRDVVT- 257
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
W I++D Y K G + A +F+ M R+V+++ +++ G Y +AL +
Sbjct: 258 --W-------AIMIDGYGKLGLVHQAKTLFDQMPHRDVVAYNSMMSGFVQNRYHIEALEV 308
Query: 239 FEMMQA-TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE-YDLEPRIQHYG----C 292
F M+ + + P+E T VL+A G + K ID Y +E R G
Sbjct: 309 FNHMEKESHLSPDETTLVIVLSAIAQLG------RLTKAIDMHLYIVEKRFLLSGKLGVA 362
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH----KQFDMAERVIKQALRM 348
++D++ K G ++ A V + ++ W + + H FDM ++ + R
Sbjct: 363 LIDMYSKCGSIQHAMRVFEGIE-SKSIDHWNAMIGGLAVHGLGESAFDMLLQIER---RS 418
Query: 349 VKPEN 353
+KP++
Sbjct: 419 IKPDH 423
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 111/246 (45%), Gaps = 43/246 (17%)
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
W+A+I ++ + L LF M+ N G+ D+ ++ VL CS LG G HG
Sbjct: 61 WNAVIKSHSHGADPRKALLLFCLMLEN-GVLVDKFSMSLVLKACSRLGFAK--EGMQVHG 117
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
F++K+ + + L+ +Y KCG L +A VF+ M +R+ +S+ ++I G G E
Sbjct: 118 FLIKSRTWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLVES 177
Query: 235 ALSLFEMM-------------------QATGV-----------KPNEMTFTGVLTACVHT 264
A LF++M +A GV + + +++ ++ V
Sbjct: 178 AGELFDLMPREKRNLITWNSMIGGYAQRADGVNVASKLFDEMPEKDLISWNSMIGGYVKH 237
Query: 265 GLVDEGRKYFKMIDEEYDLEPR--IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
G +++ + F D+ PR + + M+D +GK G + +A + M +V+ +
Sbjct: 238 GRIEDAKGLF-------DVMPRRDVVTWAIMIDGYGKLGLVHQAKTLFDQMP-HRDVVAY 289
Query: 323 GSFLAA 328
S ++
Sbjct: 290 NSMMSG 295
Score = 44.7 bits (104), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 64/165 (38%), Gaps = 31/165 (18%)
Query: 195 YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTF 254
+A+C F +Y E ++ W A+I +H AL LF +M GV ++ +
Sbjct: 37 FARCVFHEYHSRSVSPGEIKDPFLWNAVIKSHSHGADPRKALLLFCLMLENGVLVDKFSM 96
Query: 255 TGVLTACVHTGLVDEGRK-----------------------YFK-----MIDEEYDLEPR 286
+ VL AC G EG + Y K + +D P+
Sbjct: 97 SLVLKACSRLGFAKEGMQVHGFLIKSRTWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQ 156
Query: 287 IQ--HYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWGSFLAA 328
Y M+D + K G +E A E+ M R + N+I W S +
Sbjct: 157 RDSVSYNSMIDGYVKCGLVESAGELFDLMPREKRNLITWNSMIGG 201
>gi|414866864|tpg|DAA45421.1| TPA: diphthine synthase [Zea mays]
Length = 897
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 126/337 (37%), Positives = 205/337 (60%), Gaps = 5/337 (1%)
Query: 9 RQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS-FG 67
RQ + D+F +LK+C LH+ +++ GF H YV +L++ YV++
Sbjct: 192 RQHLADDTFVFKFVLKACAGLGWHRAGAQLHALVVQKGFEFHAYVHIALINVYVMSRCLV 251
Query: 68 FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
ARK+FDE+P +N V+WN MI G++ V AR F++MP RNV SW+ +I Y +A
Sbjct: 252 EARKVFDEMPVKNVVSWNVMITGFAGWDEVEYARLLFDQMPCRNVVSWTGLIDGYTHACL 311
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
Y L L R M++ G++P ++ + AV+ S+LG G++MG+ +G+ K + ++
Sbjct: 312 YAEALTLLRHMMAG-GISPSEIIVLAVIPAISNLG--GIVMGEMLNGYCEKKGIMSDVRV 368
Query: 188 ATILVDMYAKCGFLKYALMVF-ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
L+D+YAK G ++ +L VF E+++ RN++SWT++I G A G S +AL LF M+ G
Sbjct: 369 GNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAG 428
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
+KPN +TF V+ C H GLV +G +FK + EY+++P I+H+G ++D+ G+AG L EA
Sbjct: 429 IKPNRITFLSVINVCSHGGLVQQGLAFFKSMVYEYNIDPEIKHFGYIIDMLGRAGRLCEA 488
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIK 343
++I + +E NV +W L ++ + +M ER IK
Sbjct: 489 EQIIEGLPMEVNVTVWRILLGCFSKYGEVEMGERAIK 525
>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like, partial [Vitis vinifera]
Length = 599
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 195/333 (58%), Gaps = 5/333 (1%)
Query: 68 FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
A++LF+ P R+ V W MI G+ K G + A +FE MP++N+ +W+AMIA Y+
Sbjct: 148 LAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQ 207
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
+ GLKLF+ M+ + G P+ ++ +VL GCS+L + L +GK H I K+ N
Sbjct: 208 AENGLKLFKRMVES-GFRPNPSSLSSVLLGCSNLSA--LKLGKQVHQLICKSPVSWNITA 264
Query: 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
T L+ MY KCG L+ A +F +M +++V++W A+I G A G E AL LF+ M+ G+
Sbjct: 265 GTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGM 324
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
KP+ +TF VL+AC H G VD G +YF + +Y +E + HY C+VDL G+ G L EA
Sbjct: 325 KPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAV 384
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM 367
++I+ M +P+ I+G+ L AC+ HK ++AE K L + PE+ G + + ++Y
Sbjct: 385 DLIKKMPFKPHSAIFGTLLGACRIHKNLELAEFAAKNLLNL-DPESAAG-YVQLANVYAA 442
Query: 368 NEKWEGAERVRKLMLNQNVRKARGSSVISSLSV 400
+W+ VR+ M + V K G S I SV
Sbjct: 443 MNRWDHVAMVRRSMKDNKVIKTPGYSWIEVKSV 475
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 132/296 (44%), Gaps = 45/296 (15%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSK--------------------------------SGN 96
A ++F+ + + VTWN+M+ GYS + +
Sbjct: 24 ALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRIPEPDIFSYNIMLACYLHNAD 83
Query: 97 VCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLS 156
V AR FF++MP+++ ASW+ MI+ + G D +LF M ++ + M G V S
Sbjct: 84 VESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVMPVRNSVSWNAMISGYVES 143
Query: 157 GCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNV 216
G L L + W T ++ + K G ++ A FE M +N+
Sbjct: 144 GDLDLAK-QLFEVAPVRSVVA---W-------TAMITGFMKFGKIELAEKYFEEMPMKNL 192
Query: 217 ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKM 276
++W A+I G +E+ L LF+ M +G +PN + + VL C + + G++ ++
Sbjct: 193 VTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQL 252
Query: 277 IDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
I + + I ++ ++ K G LE+A+++ M + +V+ W + ++ +H
Sbjct: 253 ICKS-PVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMP-QKDVVTWNAMISGYAQH 306
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 33/167 (19%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF +M + S+ +L C++ + L + +H I K ++ TSLL
Sbjct: 212 LKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSM 271
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A KLF +P+++ VTWN MI GY++
Sbjct: 272 YCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQH------------------------- 306
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGL 166
GA + L LF +M +EG+ PD +T AVLS C+H G V L
Sbjct: 307 ------GAGEKALYLFDKM-RDEGMKPDWITFVAVLSACNHAGFVDL 346
>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g49142
gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
Length = 686
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 132/431 (30%), Positives = 222/431 (51%), Gaps = 43/431 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+++F M +V D ++ +LK+C+ + + +H K+G S ++V L+
Sbjct: 125 VKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSM 184
Query: 61 YVVTSF-GFARKLFDELPERNAVTWNTMIKGYSK-------------------------- 93
Y F AR + DE+ R+ V+WN+++ GY++
Sbjct: 185 YGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTM 244
Query: 94 -----------SGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNE 142
+ NV +D F +M +++ SW+ MI Y+ ++L+ M +
Sbjct: 245 ASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRM-EAD 303
Query: 143 GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLK 202
G PD ++I +VL C ++ L GK HG+I + + N + L+DMYAKCG L+
Sbjct: 304 GFEPDAVSITSVLPACGDTSALSL--GKKIHGYIERKKLIPNLLLENALIDMYAKCGCLE 361
Query: 203 YALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACV 262
A VFE M+ R+V+SWTA+I G DA++LF +Q +G+ P+ + F L AC
Sbjct: 362 KARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACS 421
Query: 263 HTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
H GL++EGR FK++ + Y + PR++H CMVDL G+AG ++EAY I+ M +EPN +W
Sbjct: 422 HAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVW 481
Query: 323 GSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382
G+ L AC+ H D+ + L + PE G + L+ ++Y +WE +R +M
Sbjct: 482 GALLGACRVHSDTDIG-LLAADKLFQLAPEQ-SGYYVLLSNIYAKAGRWEEVTNIRNIMK 539
Query: 383 NQNVRKARGSS 393
++ ++K G+S
Sbjct: 540 SKGLKKNPGAS 550
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 123/259 (47%), Gaps = 11/259 (4%)
Query: 87 MIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
+++ Y+ +V AR F+ +P RNV + MI +Y+N G Y G+K+F M + P
Sbjct: 80 LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGC-NVRP 138
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
D T VL CS G++ ++G+ HG K + LV MY KCGFL A +
Sbjct: 139 DHYTFPCVLKACSCSGTI--VIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARL 196
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
V + M R+V+SW +L+ G A +DAL + M++ + + T +L A +T
Sbjct: 197 VLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNT-- 254
Query: 267 VDEGRKYFKMIDEEYDLEPR-IQHYGCMVDLFGKAGFLEEAYEVIRTMR---LEPNVIIW 322
E Y K D + + + + + M+ ++ K EA E+ M EP+ +
Sbjct: 255 TTENVMYVK--DMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSI 312
Query: 323 GSFLAACKEHKQFDMAERV 341
S L AC + + +++
Sbjct: 313 TSVLPACGDTSALSLGKKI 331
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 88/187 (47%), Gaps = 3/187 (1%)
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR 229
++ H I+ + N + L+ YA + A VF+ + ERNVI +I +
Sbjct: 59 RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118
Query: 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQH 289
G+ + + +F M V+P+ TF VL AC +G + GRK + L +
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSA-TKVGLSSTLFV 177
Query: 290 YGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349
+V ++GK GFL EA V+ M +V+ W S + ++++FD A V ++ + V
Sbjct: 178 GNGLVSMYGKCGFLSEARLVLDEMS-RRDVVSWNSLVVGYAQNQRFDDALEVCRE-MESV 235
Query: 350 KPENDGG 356
K +D G
Sbjct: 236 KISHDAG 242
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 76/318 (23%), Positives = 129/318 (40%), Gaps = 73/318 (22%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L+S+M D+ SI +L +C + L++ +H G+I + +LL E
Sbjct: 294 VELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIH------GYIERKKLIPNLLLE 347
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
N +I Y+K G + +ARD FE M R+V SW+AMI+
Sbjct: 348 ------------------------NALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMIS 383
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
AY +G + LF ++ + GL PD + L+ CSH G L G+S + +
Sbjct: 384 AYGFSGRGCDAVALFSKL-QDSGLVPDSIAFVTTLAACSHAGL--LEEGRSCFKLMT-DH 439
Query: 181 WELNEQIATI--LVDMYAKCGFLKYALMVFELME-ERNVISWTALICGS----------- 226
+++ ++ + +VD+ + G +K A + M E N W AL+
Sbjct: 440 YKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLL 499
Query: 227 -----------------------AHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263
A G E+ ++ +M++ G+K N + +H
Sbjct: 500 AADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIH 559
Query: 264 TGLVDEGRKYFKMIDEEY 281
T LV G + DE Y
Sbjct: 560 TFLV--GDRSHPQSDEIY 575
>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 574
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 134/395 (33%), Positives = 221/395 (55%), Gaps = 36/395 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+ QM + D F+ +LK+C+ + + +H +++ G S V+V +L
Sbjct: 87 ISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAAL--- 143
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
I Y+K G V AR F+++ R+V W++M+A
Sbjct: 144 ---------------------------IDMYAKCGCVESARQVFDKIDERDVVCWNSMLA 176
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y G D L L R M N GL P + T V+S + + L GK HG+ ++
Sbjct: 177 TYSQNGQPDESLALCRVMAFN-GLKPTEGTF--VISIAASADNGLLPQGKELHGYSWRHG 233
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+E N+++ T L+DMYAK G + A +FEL+EE+ V+SW A+I G A G++ +AL LF+
Sbjct: 234 FESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFK 293
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ V P+ +TF GVL AC H GL++EG+ +F+ + ++++ P +QHY CM+DL G
Sbjct: 294 EMKGK-VLPDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHC 352
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G LEEAY++I MR+EP+ +WG+ L +CK H +M E +++ + + +P+ DGG + +
Sbjct: 353 GRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVEL-EPD-DGGNYVI 410
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y KW+G R+R LM+N+ ++K+ S I
Sbjct: 411 LSNMYAQAGKWDGVARLRDLMMNKGLKKSIACSWI 445
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 156/333 (46%), Gaps = 37/333 (11%)
Query: 22 ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV-TSFGFARKLFDELPERN 80
+L+SC + LH+ I ++G + +AT L++ Y + S A LFD + +RN
Sbjct: 7 LLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKRN 66
Query: 81 AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMIS 140
WN MI+GY +W+ G Y+ + L+ +M
Sbjct: 67 LFLWNVMIRGY----------------------AWN---------GPYELAISLYYQM-R 94
Query: 141 NEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGF 200
+ GL PD+ T VL CS L + + GK H ++++ E + + L+DMYAKCG
Sbjct: 95 DYGLVPDKFTFPFVLKACSALSA--MEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGC 152
Query: 201 LKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260
++ A VF+ ++ER+V+ W +++ + G +++L+L +M G+KP E TF + A
Sbjct: 153 VESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAA 212
Query: 261 CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVI 320
GL+ +G++ + E + ++D++ K+G + A + + E V+
Sbjct: 213 SADNGLLPQGKE-LHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLE-EKRVV 270
Query: 321 IWGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353
W + + H + A + K+ V P++
Sbjct: 271 SWNAMITGYAMHGHANEALDLFKEMKGKVLPDH 303
>gi|224123708|ref|XP_002319146.1| predicted protein [Populus trichocarpa]
gi|222857522|gb|EEE95069.1| predicted protein [Populus trichocarpa]
Length = 337
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 134/335 (40%), Positives = 201/335 (60%), Gaps = 10/335 (2%)
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
G A LFDE+P+RN VTWN MI G K G + A F+ MP +NV SW+ +I Y+
Sbjct: 8 LGDAMILFDEMPKRNVVTWNVMITGLVKWGKLEFASSLFDEMPEKNVVSWTGIIDGYIRN 67
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE-LN 184
Y GL LFR M+ EG+ P ++TI A+L S++G L HG+ K + +
Sbjct: 68 NKYSEGLSLFRRMVVCEGIKPTEITILAILPAISNMGE--LKSCSLIHGYAEKRGFNAFD 125
Query: 185 EQIATILVDMYAKCGFLKYALMVFE--LMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
++A ++D Y+KCG + A FE +E +N++SWT++I G A G ++A+ FE M
Sbjct: 126 IRVANSIIDCYSKCGCIASAFKFFEDISVERKNLVSWTSIISGFAMHGMWKEAVEYFERM 185
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEG-RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
+ G+KPN +TF VL AC H GLVDEG R ++KM++E + + P I+HYGC+VD+ G+ G
Sbjct: 186 EKAGLKPNRVTFLSVLNACSHGGLVDEGLRCFYKMVNE-HGVLPDIKHYGCVVDMLGRTG 244
Query: 302 FLEEAYEVIRTMRLE-PNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
LEEA + + E NV+IW + L AC H +M ERV ++ + M + GG + L
Sbjct: 245 RLEEAENMALEIPSEIVNVVIWRTLLGACSFHGNVEMGERVTRKIMEMER--GYGGDYVL 302
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ +++ ++E AER+RKLM +N K G+S++
Sbjct: 303 MYNIFAGAGRYEDAERLRKLMNKRNAFKLPGNSLV 337
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 37/191 (19%)
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE------------- 240
MY G L A+++F+ M +RNV++W +I G G E A SLF+
Sbjct: 1 MYLSSGVLGDAMILFDEMPKRNVVTWNVMITGLVKWGKLEFASSLFDEMPEKNVVSWTGI 60
Query: 241 -------------------MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY 281
M+ G+KP E+T +L A + G + ++
Sbjct: 61 IDGYIRNNKYSEGLSLFRRMVVCEGIKPTEITILAILPAISNMGELKSCSLIHGYAEKRG 120
Query: 282 DLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE-PNVIIWGSFLAACKEHKQFDMA-- 338
I+ ++D + K G + A++ + +E N++ W S ++ H + A
Sbjct: 121 FNAFDIRVANSIIDCYSKCGCIASAFKFFEDISVERKNLVSWTSIISGFAMHGMWKEAVE 180
Query: 339 --ERVIKQALR 347
ER+ K L+
Sbjct: 181 YFERMEKAGLK 191
>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
Length = 539
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 134/401 (33%), Positives = 219/401 (54%), Gaps = 26/401 (6%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSF-GFARKLF 73
D S++++L +C +H ++ G ++V +L+ Y A K+F
Sbjct: 12 DVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKVF 71
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRN----VASWSAMIAAYLNAGAYD 129
D + E++ V+WN M+ GYS+ G +A FE+M N V SWSA+IAA+ G
Sbjct: 72 DRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLGC 131
Query: 130 PGLKLFREMISNEG----------------LTPDQMTIGAVLSGCSHLGSVGLLMGKSAH 173
L +FREM E + P+ TI L C+ L + L +G+ H
Sbjct: 132 ETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAA--LRLGRQIH 189
Query: 174 GFIVKNEWELN-EQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
+I++N ++ +A L+DMYAK G + A VF+ ++++N +SWT+L+ G G
Sbjct: 190 AYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRG 249
Query: 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC 292
++AL +F+ M+ G++P+ +T VL AC H+G++D+G ++F + +E+ + P +HY C
Sbjct: 250 KEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYAC 309
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE 352
MVDL G+AG L EA E+I M++EP+ I+W + L+ C+ H ++ E KQ L + E
Sbjct: 310 MVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLEL-NSE 368
Query: 353 NDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
NDG +TL+ ++Y +W+ RVR LM N +RK G S
Sbjct: 369 NDGS-YTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCS 408
>gi|413944078|gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
Length = 794
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 122/329 (37%), Positives = 196/329 (59%), Gaps = 8/329 (2%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A+++FD +P ++ +W +M+ Y+K G++ A F+ +P RNV SWS M+AAY +A
Sbjct: 287 AKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMP 346
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGS--VGLLMGKSAHGFIVKNEWELNEQ 186
D +++F +MI+ G+ P T+ +VLS C+ L S VG + + +IV ++ EL
Sbjct: 347 DEAIRIFNDMIA-AGVEPIDATLVSVLSACAQLCSLDVGTWLYDT---YIVSHKVELTPN 402
Query: 187 IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
++ +DM+AKCG + A +F ME++NV+SW +I G E+AL LF+ + G
Sbjct: 403 LSNAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNG 462
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
+ P+E T+ GVL+AC H GLV EGR +FK + Y +EPR +HY CM+DL GK G L+EA
Sbjct: 463 ILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLQEA 522
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366
+EV R+M + + WG+ L AC+ H ++ + L + P +D G++ L+ +Y
Sbjct: 523 FEVARSMPVGADEAGWGALLNACRMHGNVEIG-KCAADKLAGLDP-SDSGIYVLMSQIYA 580
Query: 367 MNEKWEGAERVRKLMLNQNVRKARGSSVI 395
KW + +R +M ++ V+K G S I
Sbjct: 581 SKSKWGQVKMLRTVMRDRRVKKNPGCSSI 609
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 89/377 (23%), Positives = 164/377 (43%), Gaps = 69/377 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF ++ R + D+ +I+ +K+ ++ T +H K GFI +A
Sbjct: 117 LTLFRRVLRDRLAVDARTIVFAVKAAATSSSPT--EAIHCVAFKRGFIGQSVLAG----- 169
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
N ++ Y+ S + +AR F+ M R+V SW+ +I
Sbjct: 170 ------------------------NALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLID 205
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y G D ++F M+ E + P+++T+ A S +G +GL G++ H IV++
Sbjct: 206 GYARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGL--GRTVHQCIVESG 263
Query: 181 WELNEQIATILVDM-------------------------------YAKCGFLKYALMVFE 209
++ + LVDM YAKCG L+ A +F+
Sbjct: 264 GRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFK 323
Query: 210 LMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
+ RNV+SW+ ++ +H ++A+ +F M A GV+P + T VL+AC +D
Sbjct: 324 EIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDV 383
Query: 270 GRKYFK--MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
G + ++ + +L P + + +D+F K G + A + M + NV+ W + +
Sbjct: 384 GTWLYDTYIVSHKVELTPNLSN--AFIDMFAKCGDVGAASRLFSNME-DKNVVSWNTMIM 440
Query: 328 ACKEHKQFDMAERVIKQ 344
A H Q + A + ++
Sbjct: 441 AHGLHGQPEEALHLFQE 457
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 87/230 (37%), Gaps = 44/230 (19%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+++F+ M V +++ +L +C +L V L+ + +SH T L
Sbjct: 350 IRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYDTYI----VSHKVELTPNLSN 405
Query: 61 YVVTSF------GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVAS 114
+ F G A +LF + ++N V+WNTMI + G EA
Sbjct: 406 AFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEA-------------- 451
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
L LF+E N G+ PD+ T VLS CSH G V
Sbjct: 452 -----------------LHLFQEFKGN-GILPDEATYIGVLSACSHGGLVSEGRCHFKEM 493
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALI 223
IV E A ++D+ K G L+ A V M + W AL+
Sbjct: 494 KIVYGIEPRAEHYAC-MIDLLGKVGLLQEAFEVARSMPVGADEAGWGALL 542
>gi|414866863|tpg|DAA45420.1| TPA: hypothetical protein ZEAMMB73_079127 [Zea mays]
Length = 716
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 126/337 (37%), Positives = 205/337 (60%), Gaps = 5/337 (1%)
Query: 9 RQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS-FG 67
RQ + D+F +LK+C LH+ +++ GF H YV +L++ YV++
Sbjct: 192 RQHLADDTFVFKFVLKACAGLGWHRAGAQLHALVVQKGFEFHAYVHIALINVYVMSRCLV 251
Query: 68 FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
ARK+FDE+P +N V+WN MI G++ V AR F++MP RNV SW+ +I Y +A
Sbjct: 252 EARKVFDEMPVKNVVSWNVMITGFAGWDEVEYARLLFDQMPCRNVVSWTGLIDGYTHACL 311
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
Y L L R M++ G++P ++ + AV+ S+LG G++MG+ +G+ K + ++
Sbjct: 312 YAEALTLLRHMMAG-GISPSEIIVLAVIPAISNLG--GIVMGEMLNGYCEKKGIMSDVRV 368
Query: 188 ATILVDMYAKCGFLKYALMVF-ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
L+D+YAK G ++ +L VF E+++ RN++SWT++I G A G S +AL LF M+ G
Sbjct: 369 GNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAG 428
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
+KPN +TF V+ C H GLV +G +FK + EY+++P I+H+G ++D+ G+AG L EA
Sbjct: 429 IKPNRITFLSVINVCSHGGLVQQGLAFFKSMVYEYNIDPEIKHFGYIIDMLGRAGRLCEA 488
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIK 343
++I + +E NV +W L ++ + +M ER IK
Sbjct: 489 EQIIEGLPMEVNVTVWRILLGCFSKYGEVEMGERAIK 525
>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
Length = 830
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 130/400 (32%), Positives = 219/400 (54%), Gaps = 12/400 (3%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+LF +M + VP D F+ +L +C + +H I++L + V A ++
Sbjct: 284 ELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQ-PNFVPEAALPVNNA 342
Query: 62 VVTSFG------FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASW 115
+VT + A+++FD + ++ V+WNT++ GY SG + +A + F+ MP +N SW
Sbjct: 343 LVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSW 402
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
M++ Y++ G + LKLF +M + E + P T ++ C LG+ L G+ H
Sbjct: 403 MVMVSGYVHGGLSEDALKLFNQMRA-EDVKPCDYTYAGAIAACGELGA--LKHGRQLHAH 459
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
+V+ +E + L+ MYAKCG + A +VF +M + +SW A+I G+ +A
Sbjct: 460 LVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREA 519
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
L LF+ M A G+ P+ ++F +LTAC H GLVDEG YF+ + ++ + P HY ++D
Sbjct: 520 LELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLID 579
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
L G++G + EA ++I+TM EP IW + L+ C+ + + Q RM+ P++D
Sbjct: 580 LLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMI-PQHD- 637
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G + L+ + Y+ +W A RVRKLM ++ V+K G S I
Sbjct: 638 GTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWI 677
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 104/365 (28%), Positives = 173/365 (47%), Gaps = 50/365 (13%)
Query: 11 SVPSDSFSILHILKSCTHFNNLTVIH--HLHSHILKLGFISHVYVATSLLHEYVVTSFG- 67
S+ D +S ++ + +NL H LH +LK G + + V+ +L+ Y+
Sbjct: 156 SLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPE 215
Query: 68 ---FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLN 124
ARK+ DE+P+++ +TW TM+ GY + G+V AR FE + + W+AMI+ Y+
Sbjct: 216 ASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQ 275
Query: 125 AGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN 184
+G +LFR M+S E + D+ T +VLS C++ G + GKS HG I++ +
Sbjct: 276 SGMCADAFELFRRMVS-EKVPLDEFTFTSVLSACANAGF--FVHGKSVHGQIIRLQPNFV 332
Query: 185 EQIA----TILVDMYAK-------------------------------CGFLKYALMVFE 209
+ A LV +Y+K G L A+ VF+
Sbjct: 333 PEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFK 392
Query: 210 LMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
+M +N +SW ++ G H G SEDAL LF M+A VKP + T+ G + AC G +
Sbjct: 393 VMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKH 452
Query: 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNV--IIWGSFLA 327
GR+ + + E ++ ++ K G + +A V M PN+ + W + ++
Sbjct: 453 GRQLHAHL-VQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVM---PNLDSVSWNAMIS 508
Query: 328 ACKEH 332
A +H
Sbjct: 509 ALGQH 513
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 5/153 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF+QM + V ++ + +C L LH+H+++ GF + +LL
Sbjct: 419 LKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTM 478
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA----SW 115
Y + AR +F +P ++V+WN MI + G+ EA + F++M + S+
Sbjct: 479 YAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISF 538
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ 148
++ A +AG D G F M + G++P +
Sbjct: 539 LTILTACNHAGLVDEGFHYFESMKRDFGISPGE 571
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 127/392 (32%), Positives = 215/392 (54%), Gaps = 36/392 (9%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV 63
F + ++ + +S + IL C ++L + +H I+K G S ++V+ +L+ +V
Sbjct: 502 FQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFV- 560
Query: 64 TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL 123
G++ A++ F MP R++ SW+ +IA ++
Sbjct: 561 -----------------------------NCGDLMSAKNLFNDMPKRDLVSWNTIIAGFV 591
Query: 124 NAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWEL 183
G F+ M+ G+ PD++T +L+ C+ L G+ H I + ++
Sbjct: 592 QHGKNQVAFDYFK-MMQESGIKPDKITFTGLLNACA--SPEALTEGRRLHALITEAAFDC 648
Query: 184 NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQ 243
+ + T L+ MY KCG ++ A VF + ++NV SWT++I G A G ++AL LF MQ
Sbjct: 649 DVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQ 708
Query: 244 ATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFL 303
GVKP+ +TF G L+AC H GL++EG +F+ + +E+++EPR++HYGCMVDLFG+AG L
Sbjct: 709 QEGVKPDWITFVGALSACAHAGLIEEGLHHFQSM-KEFNIEPRMEHYGCMVDLFGRAGLL 767
Query: 304 EEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICD 363
EA E I M++EP+ +WG+ L AC+ H ++AE+ ++ L + ND GVF ++ +
Sbjct: 768 NEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLEL--DPNDNGVFVILSN 825
Query: 364 LYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+Y W+ ++RK+ML++ V K G S I
Sbjct: 826 IYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWI 857
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 101/383 (26%), Positives = 191/383 (49%), Gaps = 40/383 (10%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+L QM + SV D + + +L +C N+ L++ ILK G+ + ++V T+L++ +
Sbjct: 197 KLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMH 256
Query: 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+ K G++ +A F+ +P R++ +W++MI
Sbjct: 257 I------------------------------KCGDIGDATKVFDNLPTRDLVTWTSMITG 286
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
G + LF+ M EG+ PD++ ++L C+H L GK H + + W
Sbjct: 287 LARHGRFKQACNLFQRM-EEEGVQPDKVAFVSLLRACNH--PEALEQGKKVHARMKEVGW 343
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ + T ++ MY KCG ++ AL VF+L++ RNV+SWTA+I G A G ++A F
Sbjct: 344 DTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNK 403
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK-MIDEEYDLEPRIQHYGCMVDLFGKA 300
M +G++PN +TF +L AC + G++ +I+ Y + R++ ++ ++ K
Sbjct: 404 MIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR--TALLSMYAKC 461
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-VKPENDGGVFT 359
G L++A+ V + + NV+ W + + A +H+Q+D A + L+ +KP + FT
Sbjct: 462 GSLKDAHRVFEKIS-KQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKP--NSSTFT 518
Query: 360 LICDLYTMNEKWEGAERVRKLML 382
I ++ ++ E + V L++
Sbjct: 519 SILNVCKSSDSLELGKWVHFLIM 541
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 106/423 (25%), Positives = 192/423 (45%), Gaps = 79/423 (18%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL---- 58
LF +M + V D + + +L++C H L +H+ + ++G+ + +YV T++L
Sbjct: 299 LFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYT 358
Query: 59 --------------------------------HEYVVTSFGFARKLFDELPERNAVTWNT 86
H + +F F K+ + E N VT+ +
Sbjct: 359 KCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMS 418
Query: 87 MIKG-----------------------------------YSKSGNVCEARDFFERMPLRN 111
++ Y+K G++ +A FE++ +N
Sbjct: 419 ILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQN 478
Query: 112 VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKS 171
V +W+AMI AY+ YD L F+ ++ EG+ P+ T ++L+ C S L +GK
Sbjct: 479 VVAWNAMITAYVQHEQYDNALATFQALL-KEGIKPNSSTFTSILNVCK--SSDSLELGKW 535
Query: 172 AHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGY 231
H I+K E + ++ LV M+ CG L A +F M +R+++SW +I G G
Sbjct: 536 VHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGK 595
Query: 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE-EYDLEPRIQHY 290
++ A F+MMQ +G+KP+++TFTG+L AC + EGR+ +I E +D + +
Sbjct: 596 NQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVG-- 653
Query: 291 GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-V 349
++ ++ K G +E+A++V + + NV W S + +H + A + Q + V
Sbjct: 654 TGLISMYTKCGSIEDAHQVFHKLP-KKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGV 712
Query: 350 KPE 352
KP+
Sbjct: 713 KPD 715
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 88/334 (26%), Positives = 170/334 (50%), Gaps = 44/334 (13%)
Query: 6 QMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS 65
Q++RQ+ + +L+ C F NL +++HI K G +++
Sbjct: 107 QIYRQTYSA-------LLQLCIKFKNLGDGERIYNHIKKSGVQPDIFM------------ 147
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
WNT+I Y+K GN A+ F+ M ++V SW+ ++ Y+
Sbjct: 148 ------------------WNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQH 189
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
G Y+ KL +M+ + + PD+ T ++L+ C+ +V G+ + I+K W+ +
Sbjct: 190 GLYEEAFKLHEQMV-QDSVKPDKRTFVSMLNACADARNVD--KGRELYNLILKAGWDTDL 246
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
+ T L++M+ KCG + A VF+ + R++++WT++I G A G + A +LF+ M+
Sbjct: 247 FVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEE 306
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLE 304
GV+P+++ F +L AC H +++G+K + +M + +D E + ++ ++ K G +E
Sbjct: 307 GVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVG--TAILSMYTKCGSME 364
Query: 305 EAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
+A EV ++ NV+ W + +A +H + D A
Sbjct: 365 DALEVFDLVKGR-NVVSWTAMIAGFAQHGRIDEA 397
>gi|255594521|ref|XP_002536106.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223520840|gb|EEF26277.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 519
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 120/334 (35%), Positives = 198/334 (59%), Gaps = 7/334 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LFS+M S+ D F++ IL +C + NL + +HS+I++ F V +L+
Sbjct: 189 LELFSRMLEDSLKPDRFTLASILSACANIENLNLGKQIHSYIIRTEFDISGVVQNALISM 248
Query: 61 YVVTS-FGFARKLFDE--LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
Y T A+ + ++ + + N + + ++ GY K GN+ AR F+ + +V +W+A
Sbjct: 249 YAKTGGVEIAQSIVEQSGISDLNVIAFTALLDGYVKLGNITPARHIFDSLKDSDVVAWTA 308
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MI Y+ G D ++LFR M + EG P+ T+ A+LS S++ S L GK H +
Sbjct: 309 MIVGYVQNGLNDDAMELFRIM-AKEGPRPNSFTLAAMLSVSSNVAS--LNHGKQIHASAI 365
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE-RNVISWTALICGSAHRGYSEDAL 236
++ L+ + L+ MYAK G + A VF L++ ++ +SWT++I G ++++
Sbjct: 366 RSGENLSVSVGNALITMYAKAGSITDAQQVFNLIQRNKDTVSWTSMIIALGQHGLGQESI 425
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
LFE M A G+KP+ +T+ GVL+AC H GLV++GR YF ++ + +EP + HY CM+DL
Sbjct: 426 ELFEKMLALGIKPDHITYVGVLSACTHVGLVEQGRGYFNLMTSIHKIEPTLSHYACMIDL 485
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330
FG+AG L+EA+ I M +EP+VI WGS L++CK
Sbjct: 486 FGRAGLLQEAFSFIENMPIEPDVIAWGSLLSSCK 519
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 96/388 (24%), Positives = 188/388 (48%), Gaps = 41/388 (10%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+++F M + V F++ ++ SC L + +HS ++KLG V VA SLL+
Sbjct: 57 IKMFVAMMKDKVLPTQFTVTNVFASCAALGALDIGKKIHSFVIKLGLSGCVPVANSLLNM 116
Query: 61 YVVTSFG-FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A+ +FD + R+ +WN MI + G A FE+M R+V +W++MI
Sbjct: 117 YAKAGDSVMAKIVFDRMRLRSISSWNIMISLHMHGGRADLALAQFEQMSERDVVTWNSMI 176
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y G L+LF M+ + L PD+ T+ ++LS C+++ ++ L GK H +I++
Sbjct: 177 TGYSQHGFDKEALELFSRML-EDSLKPDRFTLASILSACANIENLNL--GKQIHSYIIRT 233
Query: 180 EWELNEQIATILVDMYAKCGFLKYALM--------------------------------- 206
E++++ + L+ MYAK G ++ A
Sbjct: 234 EFDISGVVQNALISMYAKTGGVEIAQSIVEQSGISDLNVIAFTALLDGYVKLGNITPARH 293
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
+F+ +++ +V++WTA+I G G ++DA+ LF +M G +PN T +L+ +
Sbjct: 294 IFDSLKDSDVVAWTAMIVGYVQNGLNDDAMELFRIMAKEGPRPNSFTLAAMLSVSSNVAS 353
Query: 267 VDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSF 325
++ G++ + I +L + + ++ ++ KAG + +A +V ++ + + W S
Sbjct: 354 LNHGKQIHASAIRSGENLSVSVGN--ALITMYAKAGSITDAQQVFNLIQRNKDTVSWTSM 411
Query: 326 LAACKEHKQFDMAERVIKQALRM-VKPE 352
+ A +H + + ++ L + +KP+
Sbjct: 412 IIALGQHGLGQESIELFEKMLALGIKPD 439
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 141/284 (49%), Gaps = 38/284 (13%)
Query: 76 LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF 135
+P + +WNT++ GY+K G + +A F+ +P R+ SW+ MI Y G ++ +K+F
Sbjct: 1 MPVKTTFSWNTILTGYAKLGTLAKAHSVFDEIPDRDSVSWTTMIVGYNQMGRFESAIKMF 60
Query: 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY 195
M+ ++ L P Q T+ V + C+ LG+ L +GK H F++K +A L++MY
Sbjct: 61 VAMMKDKVL-PTQFTVTNVFASCAALGA--LDIGKKIHSFVIKLGLSGCVPVANSLLNMY 117
Query: 196 AKCG-------------------------------FLKYALMVFELMEERNVISWTALIC 224
AK G AL FE M ER+V++W ++I
Sbjct: 118 AKAGDSVMAKIVFDRMRLRSISSWNIMISLHMHGGRADLALAQFEQMSERDVVTWNSMIT 177
Query: 225 GSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK-MIDEEYDL 283
G + G+ ++AL LF M +KP+ T +L+AC + ++ G++ +I E+D+
Sbjct: 178 GYSQHGFDKEALELFSRMLEDSLKPDRFTLASILSACANIENLNLGKQIHSYIIRTEFDI 237
Query: 284 EPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRL-EPNVIIWGSFL 326
+Q+ ++ ++ K G +E A ++ + + NVI + + L
Sbjct: 238 SGVVQN--ALISMYAKTGGVEIAQSIVEQSGISDLNVIAFTALL 279
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 127/392 (32%), Positives = 215/392 (54%), Gaps = 36/392 (9%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV 63
F + ++ + +S + IL C ++L + +H I+K G S ++V+ +L+ +V
Sbjct: 502 FQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFV- 560
Query: 64 TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL 123
G++ A++ F MP R++ SW+ +IA ++
Sbjct: 561 -----------------------------NCGDLMSAKNLFNDMPKRDLVSWNTIIAGFV 591
Query: 124 NAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWEL 183
G F+ M+ G+ PD++T +L+ C+ L G+ H I + ++
Sbjct: 592 QHGKNQVAFDYFK-MMQESGIKPDKITFTGLLNACA--SPEALTEGRRLHALITEAAFDC 648
Query: 184 NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQ 243
+ + T L+ MY KCG ++ A VF + ++NV SWT++I G A G ++AL LF MQ
Sbjct: 649 DVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQ 708
Query: 244 ATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFL 303
GVKP+ +TF G L+AC H GL++EG +F+ + +E+++EPR++HYGCMVDLFG+AG L
Sbjct: 709 QEGVKPDWITFVGALSACAHAGLIEEGLHHFQSM-KEFNIEPRMEHYGCMVDLFGRAGLL 767
Query: 304 EEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICD 363
EA E I M++EP+ +WG+ L AC+ H ++AE+ ++ L + ND GVF ++ +
Sbjct: 768 NEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLEL--DPNDNGVFVILSN 825
Query: 364 LYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+Y W+ ++RK+ML++ V K G S I
Sbjct: 826 IYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWI 857
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 101/383 (26%), Positives = 191/383 (49%), Gaps = 40/383 (10%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+L QM + SV D + + +L +C N+ L++ ILK G+ + ++V T+L++ +
Sbjct: 197 KLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMH 256
Query: 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+ K G++ +A F+ +P R++ +W++MI
Sbjct: 257 I------------------------------KCGDIGDATKVFDNLPTRDLVTWTSMITG 286
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
G + LF+ M EG+ PD++ ++L C+H L GK H + + W
Sbjct: 287 LARHGRFKQACNLFQRM-EEEGVQPDKVAFVSLLRACNH--PEALEQGKKVHARMKEVGW 343
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ + T ++ MY KCG ++ AL VF+L++ RNV+SWTA+I G A G ++A F
Sbjct: 344 DTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNK 403
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK-MIDEEYDLEPRIQHYGCMVDLFGKA 300
M +G++PN +TF +L AC + G++ +I+ Y + R++ ++ ++ K
Sbjct: 404 MIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR--TALLSMYAKC 461
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-VKPENDGGVFT 359
G L++A+ V + + NV+ W + + A +H+Q+D A + L+ +KP + FT
Sbjct: 462 GSLKDAHRVFEKIS-KQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKP--NSSTFT 518
Query: 360 LICDLYTMNEKWEGAERVRKLML 382
I ++ ++ E + V L++
Sbjct: 519 SILNVCKSSDSLELGKWVHFLIM 541
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 107/423 (25%), Positives = 193/423 (45%), Gaps = 79/423 (18%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL---- 58
LF +M + V D + + +L++C H L +H+ + ++G+ + +YV T++L
Sbjct: 299 LFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYT 358
Query: 59 --------------------------------HEYVVTSFGFARKLFDELPERNAVTWNT 86
H + +F F K+ + E N VT+ +
Sbjct: 359 KCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMS 418
Query: 87 MIKG-----------------------------------YSKSGNVCEARDFFERMPLRN 111
++ Y+K G++ +A FE++ +N
Sbjct: 419 ILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQN 478
Query: 112 VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKS 171
V +W+AMI AY+ YD L F+ ++ EG+ P+ T ++L+ C S L +GK
Sbjct: 479 VVAWNAMITAYVQHEQYDNALATFQALL-KEGIKPNSSTFTSILNVCK--SSDSLELGKW 535
Query: 172 AHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGY 231
H I+K E + ++ LV M+ CG L A +F M +R+++SW +I G G
Sbjct: 536 VHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGK 595
Query: 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE-EYDLEPRIQHY 290
++ A F+MMQ +G+KP+++TFTG+L AC + EGR+ +I E +D + +
Sbjct: 596 NQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVG-- 653
Query: 291 GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-V 349
++ ++ K G +E+A++V + + NV W S +A +H + A + Q + V
Sbjct: 654 TGLISMYTKCGSIEDAHQVFHKLP-KKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGV 712
Query: 350 KPE 352
KP+
Sbjct: 713 KPD 715
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 169/334 (50%), Gaps = 44/334 (13%)
Query: 6 QMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS 65
Q++RQ+ + +L+ C F NL +++HI K G +++
Sbjct: 107 QIYRQTYSA-------LLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMR----------- 148
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
NT+I Y+K GN A+ F+ M ++V SW+ ++ Y+
Sbjct: 149 -------------------NTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQH 189
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
G Y+ KL +M+ + + PD+ T ++L+ C+ +V G+ + I+K W+ +
Sbjct: 190 GLYEEAFKLHEQMV-QDSVKPDKRTFVSMLNACADARNVD--KGRELYNLILKAGWDTDL 246
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
+ T L++M+ KCG + A VF+ + R++++WT++I G A G + A +LF+ M+
Sbjct: 247 FVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEE 306
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLE 304
GV+P+++ F +L AC H +++G+K + +M + +D E + ++ ++ K G +E
Sbjct: 307 GVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVG--TAILSMYTKCGSME 364
Query: 305 EAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
+A EV ++ NV+ W + +A +H + D A
Sbjct: 365 DALEVFDLVKGR-NVVSWTAMIAGFAQHGRIDEA 397
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 112/231 (48%), Gaps = 7/231 (3%)
Query: 109 LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLM 168
+++ +A++ AG ++ +++ E + + + + T A+L C ++G
Sbjct: 72 IKDTQKANAVLNRLSKAGQFNEAMQVL-ERVDSSHIQIYRQTYSALLQLCIKFKNLG--D 128
Query: 169 GKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAH 228
G+ + I K+ + + + L++MYAKCG A +F+ M E++V SW L+ G
Sbjct: 129 GERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQ 188
Query: 229 RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI-DEEYDLEPRI 287
G E+A L E M VKP++ TF +L AC VD+GR+ + +I +D + +
Sbjct: 189 HGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFV 248
Query: 288 QHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
++++ K G + +A +V + +++ W S + H +F A
Sbjct: 249 G--TALINMHIKCGDIGDATKVFDNLPTR-DLVTWTSMITGLARHGRFKQA 296
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 129/397 (32%), Positives = 221/397 (55%), Gaps = 37/397 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF +M + +V D +++ +L +C ++ + +HS I GF S++ +
Sbjct: 183 LELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIV------ 236
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
N +I YSK G V A FE + ++V SW+ +I
Sbjct: 237 ------------------------NALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIG 272
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y + Y L LF+EM+ + G +P+ +TI ++L C+HLG++ + G+ H +I K
Sbjct: 273 GYTHMNLYKEALLLFQEMLRS-GESPNDVTIVSILPACAHLGAIDI--GRWIHVYIDKKL 329
Query: 181 WELNE--QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
++ + T L+DMYAKCG ++ A VF M +++ SW A+I G A G + L
Sbjct: 330 KDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDL 389
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F M+ G++P+++TF G+L+AC H+G +D GR FK + ++YD+ P+++HYGCM+DL G
Sbjct: 390 FSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLG 449
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+G +EA E+I+TM +EP+ +IW S L AC+ H ++AE + ++ V+PEN G +
Sbjct: 450 HSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMK-VEPENPGS-Y 507
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y +W+ +VR L+ + ++K G S I
Sbjct: 508 VLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSI 544
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 113/352 (32%), Positives = 192/352 (54%), Gaps = 10/352 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L+ M + +S++ +LKSC +H H+LKLG+ +YV TSL+
Sbjct: 51 LKLYVVMISLGLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISM 110
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A K+FD R+ V++ +I GY+ SGN+ A++ F+ +P+++V SW+AMI
Sbjct: 111 YAQNGRLEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMI 170
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y G+Y L+LF+EM+ + PD+ T+ VLS C+ SV L G+ H +I +
Sbjct: 171 SGYAETGSYKEALELFKEMMKTN-VRPDEGTMVTVLSACAQSRSVEL--GRQVHSWIDDH 227
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ N +I L+D+Y+KCG ++ A +FE + ++V+SW LI G H ++AL LF
Sbjct: 228 GFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLF 287
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY-DLEPRIQHYGCMVDLFG 298
+ M +G PN++T +L AC H G +D GR ID++ D+ ++D++
Sbjct: 288 QEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYA 347
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ----FDMAERVIKQAL 346
K G +E A++V +M L ++ W + + H + FD+ R+ K +
Sbjct: 348 KCGDIEAAHQVFNSM-LHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGI 398
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 90/342 (26%), Positives = 149/342 (43%), Gaps = 72/342 (21%)
Query: 56 SLLHEYVVTS-----FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR 110
S L E+ V S F +A +F + E N + WNTM++GY+ S + A
Sbjct: 1 SKLLEFCVLSPHFDGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSA---------- 50
Query: 111 NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGK 170
LKL+ MIS GL P+ T +L C+ S G+
Sbjct: 51 ---------------------LKLYVVMIS-LGLLPNSYTFPFLLKSCAK--SKAFEEGQ 86
Query: 171 SAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAH-- 228
HG ++K +E + + T L+ MYA+ G L+ A VF+ R+V+S+TALI G A
Sbjct: 87 QIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYASSG 146
Query: 229 ------------------------RGYSE-----DALSLFEMMQATGVKPNEMTFTGVLT 259
GY+E +AL LF+ M T V+P+E T VL+
Sbjct: 147 NIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLS 206
Query: 260 ACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNV 319
AC + V+ GR+ ID ++ ++ ++DL+ K G +E A + + + +V
Sbjct: 207 ACAQSRSVELGRQVHSWID-DHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCK-DV 264
Query: 320 IIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
+ W + + + A + ++ LR + ND + +++
Sbjct: 265 VSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSIL 306
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 87/196 (44%), Gaps = 8/196 (4%)
Query: 199 GFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL 258
GF YA+ VF ++E N + W ++ G A AL L+ +M + G+ PN TF +L
Sbjct: 15 GF-PYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLL 73
Query: 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPN 318
+C + +EG++ + + EP + + ++ ++ + G LE+A++V +
Sbjct: 74 KSCAKSKAFEEGQQIHGHV-LKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSS-HRD 131
Query: 319 VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVR 378
V+ + + + A+ + + P D + + Y ++ A +
Sbjct: 132 VVSYTALITGYASSGNIRSAQEMFDEI-----PVKDVVSWNAMISGYAETGSYKEALELF 186
Query: 379 KLMLNQNVRKARGSSV 394
K M+ NVR G+ V
Sbjct: 187 KEMMKTNVRPDEGTMV 202
>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
Length = 690
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 138/444 (31%), Positives = 228/444 (51%), Gaps = 68/444 (15%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY------------- 61
D+F+ ++K+ +T + H+H+ KLG + +V +L+ Y
Sbjct: 204 DTFTYSFLIKALA-TAGVTPVRAAHTHVFKLGSVEDTFVGNALIDAYSKNDGLSDAKKVF 262
Query: 62 -------VVT------------SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARD 102
VV+ AR +FDE+PE++ V+WNTM+ GY+K+G EA +
Sbjct: 263 DEMTTRDVVSWNTAMAAMVRKGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEEAFE 322
Query: 103 FFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM--------------ISNEGLTP-- 146
F+RMP RNV SWS +++AY G + +F +M + +GL
Sbjct: 323 LFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVGEA 382
Query: 147 --------------DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILV 192
D + + ++L+ C+ G + L GK H + + + + + L+
Sbjct: 383 GRLFTEMKEAAIELDVVAVVSILAACAESGCLAL--GKRIHRHVRQRKLGRSTLVCNALM 440
Query: 193 DMYAKCGFLKYALMVFEL-MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE 251
DM+ KCG + A +F+ + E++ +SW +I G A G+ E AL+LF M+ G P+
Sbjct: 441 DMFCKCGCVNRADYIFDTEIVEKDSVSWNIIIGGFAMHGHGEKALNLFTQMKQQGFHPDA 500
Query: 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR 311
+T VL+AC H GLV+EGR++F ++ +Y ++P I+HYGCMVDL G+ G ++EA ++I+
Sbjct: 501 VTLINVLSACTHMGLVEEGRRFFANMETDYGIKPEIEHYGCMVDLLGRGGLIKEAVDMIK 560
Query: 312 TMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKW 371
+M EPN +IWGS L+AC+ HK + AE + L ++P N G + ++ ++Y KW
Sbjct: 561 SMPWEPNEVIWGSLLSACRLHKNVEYAELAANE-LSNLQPSNAGN-YAVLSNIYAEAGKW 618
Query: 372 EGAERVRKLMLNQNVRKARGSSVI 395
+ R M +K GSS I
Sbjct: 619 SDMAKARVQMKGTGSQKTAGSSWI 642
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 100/229 (43%), Gaps = 44/229 (19%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+LF++M ++ D +++ IL +C L + +H H+ + V +L+ +
Sbjct: 384 RLFTEMKEAAIELDVVAVVSILAACAESGCLALGKRIHRHVRQRKLGRSTLVCNALMDMF 443
Query: 62 V-VTSFGFARKLFD-ELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
A +FD E+ E+++V+WN +I G++ G+ +A + F +M
Sbjct: 444 CKCGCVNRADYIFDTEIVEKDSVSWNIIIGGFAMHGHGEKALNLFTQM------------ 491
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI--V 177
+G PD +T+ VLS C+H+G V + F +
Sbjct: 492 --------------------KQQGFHPDAVTLINVLSACTHMGLV-----EEGRRFFANM 526
Query: 178 KNEWELNEQIA--TILVDMYAKCGFLKYAL-MVFELMEERNVISWTALI 223
+ ++ + +I +VD+ + G +K A+ M+ + E N + W +L+
Sbjct: 527 ETDYGIKPEIEHYGCMVDLLGRGGLIKEAVDMIKSMPWEPNEVIWGSLL 575
>gi|345505212|gb|AEN99830.1| chlororespiratory reduction 4, partial [Brassica oleracea]
Length = 590
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 118/327 (36%), Positives = 196/327 (59%), Gaps = 4/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A+ LF+ +P R+ VTW MI GY K G V A+ F++MP R+V ++++M++ Y+ +
Sbjct: 256 AKGLFNVMPRRDVVTWAIMIDGYGKLGLVHVAKTLFDQMPHRDVVAYNSMMSGYVQNRYH 315
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L++F M LTPD+ ++ VLS + LG + + H +IV+ ++ L+ ++
Sbjct: 316 MEALEVFNHMEKESHLTPDETSLVIVLSAIAQLGRLSKAI--DMHLYIVEKQFPLSGKLG 373
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+DMY+KCG +++A+ VFE +E +++ W A+I G A G E A + ++ +K
Sbjct: 374 VALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLFQIERRSIK 433
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+ +TF GVL AC H+GLV EG F+++ ++ +EPR+QHYGCMVD+ ++G ++ A
Sbjct: 434 PDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILARSGSIKLARN 493
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+I M +EPN +IW +FL AC HK+F+ E V K + + + + L+ ++Y N
Sbjct: 494 LIEGMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLI--LXGGYNPSSYVLLSNMYASN 551
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
W+ RVR +M +N+ K G S I
Sbjct: 552 GMWKDVRRVRTMMKEKNIEKIPGCSWI 578
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/367 (26%), Positives = 177/367 (48%), Gaps = 39/367 (10%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L M SVP D FS+ LK+C+ + +H ++K G S +++ L+ Y+
Sbjct: 93 LLCLMLESSVPVDKFSLSLALKACSRLGFVKEGTQVHGFLIKTGTWSDLFLQNCLIGLYI 152
Query: 63 VTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL--RNVASWSAMI 119
F GFAR++FD +PER++V++N+MI GY K G V A + F+ MP RN+ +W++MI
Sbjct: 153 KCGFLGFARQVFDRMPERDSVSYNSMIDGYVKCGLVESAGELFDLMPREKRNLITWNSMI 212
Query: 120 AAYLN-AGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
Y A D KLF EM + ++ + M G V HG I
Sbjct: 213 GGYAQRADGVDVAEKLFDEMPEKDLISWNSMIGGYV-----------------KHGRIED 255
Query: 179 NEWELN----EQIAT--ILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
+ N + T I++D Y K G + A +F+ M R+V+++ +++ G Y
Sbjct: 256 AKGLFNVMPRRDVVTWAIMIDGYGKLGLVHVAKTLFDQMPHRDVVAYNSMMSGYVQNRYH 315
Query: 233 EDALSLFEMMQA-TGVKPNEMTFTGVLTACVHTGLVDEG-RKYFKMIDEEYDLEPRIQHY 290
+AL +F M+ + + P+E + VL+A G + + + ++++++ L ++
Sbjct: 316 MEALEVFNHMEKESHLTPDETSLVIVLSAIAQLGRLSKAIDMHLYIVEKQFPLSGKLG-- 373
Query: 291 GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH----KQFDMAERVIKQAL 346
++D++ K G ++ A V + ++ W + + H FDM ++ +
Sbjct: 374 VALIDMYSKCGSIQHAMRVFEGIE-SKSIDHWNAMIGGLAVHGLGESAFDMLFQIER--- 429
Query: 347 RMVKPEN 353
R +KP++
Sbjct: 430 RSIKPDH 436
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 97/211 (45%), Gaps = 14/211 (6%)
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTP-DQMTIGAVLSGCSHLGSVGLLMGKSAH 173
W+ +I ++ + DP LF + E P D+ ++ L CS LG V G H
Sbjct: 74 WNVVIKSH--SHGVDPRKALFLLCLMLESSVPVDKFSLSLALKACSRLGFVK--EGTQVH 129
Query: 174 GFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE 233
GF++K + + L+ +Y KCGFL +A VF+ M ER+ +S+ ++I G G E
Sbjct: 130 GFLIKTGTWSDLFLQNCLIGLYIKCGFLGFARQVFDRMPERDSVSYNSMIDGYVKCGLVE 189
Query: 234 DALSLFEMMQATGVKPNEMTFTGVLTACVHTGL-VDEGRKYFKMIDEEYDLEPRIQHYGC 292
A LF++M K N +T+ ++ VD K F + E+ + +
Sbjct: 190 SAGELFDLMPRE--KRNLITWNSMIGGYAQRADGVDVAEKLFDEMPEK-----DLISWNS 242
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWG 323
M+ + K G +E+A + M +V+ W
Sbjct: 243 MIGGYVKHGRIEDAKGLFNVMP-RRDVVTWA 272
>gi|51535410|dbj|BAD37280.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125596587|gb|EAZ36367.1| hypothetical protein OsJ_20695 [Oryza sativa Japonica Group]
gi|218197849|gb|EEC80276.1| hypothetical protein OsI_22264 [Oryza sativa Indica Group]
Length = 517
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 129/416 (31%), Positives = 218/416 (52%), Gaps = 40/416 (9%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS--------- 65
D+F+ ++L++C +H ++KLGF+ YV +L++ +
Sbjct: 99 DAFTFCYLLRACAGLPGSRAGRQVHGAVVKLGFLKDAYVRNALINMFAKCGDLRVASVLL 158
Query: 66 -----------------------FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARD 102
ARK+FDE ++ V WN M+ Y+K G + AR+
Sbjct: 159 DEAGEGDVVAWSAVIAGHAARGDMAAARKMFDECTHKDIVCWNVMLGAYAKHGEMENARE 218
Query: 103 FFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLG 162
F+R P ++V SW+ +I Y G L++F EM + G TPD+ TI ++LS C++ G
Sbjct: 219 LFDRAPEKDVVSWNTIITGYAAQGMLKHALEVFDEMRA-AGWTPDEATIVSLLSCCANTG 277
Query: 163 --SVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWT 220
G ++ H + + W ++ + LV MYAKCG L A+ F M++ +V +W
Sbjct: 278 LLDAGRMIHHQLH--LERRPW-ISIVVGNALVSMYAKCGDLHTAVEGFNTMKDTDVWTWN 334
Query: 221 ALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE 280
++I G A G +E ++ F+ M + PNE++F VL AC H GLV++G+K+F ++ +
Sbjct: 335 SVIGGLAFHGQAEQSVRFFKKMLEKRIHPNEISFLCVLGACSHAGLVEDGQKFFYLMKDR 394
Query: 281 YDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAER 340
Y +EP +HY C+VD+ G+AG L+EAY ++ MR EP+ ++W + L AC+ H + +
Sbjct: 395 YGIEPNARHYSCIVDMLGRAGLLDEAYAIVSNMRCEPSAVVWRTLLGACRTHGNMTLGKL 454
Query: 341 VIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
V ++ L M E+ + L+ +Y + +W G E R+ M + +RKA G + I
Sbjct: 455 VREKLLNM--NEDASADYVLLSGIYASSGEWLGVETERRSMDRRGIRKAAGYAQID 508
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 116/257 (45%), Gaps = 15/257 (5%)
Query: 95 GNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAV 154
G + AR F+ +P ++ +AM+ Y +AGA ++R M L PD T +
Sbjct: 47 GRMGYARKVFDGIPRPDLFMHNAMVRGYAHAGAPGDAFAVYRRMTEASRLRPDAFTFCYL 106
Query: 155 LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER 214
L C+ G G G+ HG +VK + + + L++M+AKCG L+ A ++ + E
Sbjct: 107 LRACA--GLPGSRAGRQVHGAVVKLGFLKDAYVRNALINMFAKCGDLRVASVLLDEAGEG 164
Query: 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF 274
+V++W+A+I G A RG A +F+ + + + +L A G ++ R+ F
Sbjct: 165 DVVAWSAVIAGHAARGDMAAARKMFDECTHKDI----VCWNVMLGAYAKHGEMENARELF 220
Query: 275 KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE---PNVIIWGSFLAACKE 331
E+ + + ++ + G L+ A EV MR P+ S L+ C
Sbjct: 221 DRAPEK-----DVVSWNTIITGYAAQGMLKHALEVFDEMRAAGWTPDEATIVSLLSCCAN 275
Query: 332 HKQFDMAERVIKQALRM 348
D A R+I L +
Sbjct: 276 TGLLD-AGRMIHHQLHL 291
>gi|222616388|gb|EEE52520.1| hypothetical protein OsJ_34732 [Oryza sativa Japonica Group]
Length = 462
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 119/329 (36%), Positives = 194/329 (58%), Gaps = 4/329 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
RK+FD + +N+V W ++ GY+ +G EA F MP RN+ +W+A+I+ +N G
Sbjct: 11 GRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGES 70
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
++LF EM + D + V+ G + L + ++G+ HG ++ + N +
Sbjct: 71 VGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAA--FVLGRQLHGSTMRLGFLSNMIVG 128
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+DMY+KC + A VFE + R+VISWT ++ G A G +E+AL+L++ M G K
Sbjct: 129 NALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAK 188
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
PNE+TF G++ AC H GLV +GR+ F+ + EY + PR+QHY C +DL ++G L EA E
Sbjct: 189 PNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEE 248
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
++ TM EP+ WG+ L+AC ++K +M R+ + L + +P+ D + L+ ++Y +N
Sbjct: 249 LMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLEL-RPK-DSSTYILLSNVYAVN 306
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVISS 397
KW+ +VRK M+ +RK G S I +
Sbjct: 307 GKWDSVAKVRKCMIGLEIRKEPGYSWIEA 335
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 77/152 (50%), Gaps = 6/152 (3%)
Query: 1 MQLFSQMHRQSVP-SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
++LF +M R V D+F + ++ + LH ++LGF+S++ V +L+
Sbjct: 74 VELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALID 133
Query: 60 EYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR----NVAS 114
Y S AR++F+ + R+ ++W TM+ G ++ G EA ++RM L N +
Sbjct: 134 MYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVT 193
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
+ +I A +AG G +LF M + G+TP
Sbjct: 194 FVGLIYACSHAGLVQKGRQLFESMKNEYGITP 225
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
MY KCG VF+ M +N + WTAL+ G A G SE+AL LF M N
Sbjct: 1 MYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGR----NLFA 56
Query: 254 FTGVLTACVHTG 265
+T +++ V+TG
Sbjct: 57 WTALISGLVNTG 68
>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
Length = 736
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 118/318 (37%), Positives = 192/318 (60%), Gaps = 7/318 (2%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
N +I Y K G++ EA + FE++ +NV SW+ MI Y + Y L LFR M+ + +
Sbjct: 300 NGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSN-I 358
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA--TILVDMYAKCGFLK 202
P+ +T ++L C++LG++ L GK H ++ KN + +A T L+DMYAKCG L
Sbjct: 359 DPNDVTFLSILPACANLGALDL--GKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLA 416
Query: 203 YALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACV 262
A +F+ M +++ +W A+I G A G+++ AL LF M + G P+++TF GVLTAC
Sbjct: 417 VAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACK 476
Query: 263 HTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
H GL+ GR+YF + ++Y + P++ HYGCM+DLFG+AG +EA +++ M ++P+ IW
Sbjct: 477 HAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIW 536
Query: 323 GSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382
S L AC+ H++ ++AE V K + +PEN + L+ ++Y +WE ++R +
Sbjct: 537 CSLLGACRIHRRIELAESVAKHLFEL-EPENPSA-YVLLSNIYAGAGRWEDVAKIRTRLN 594
Query: 383 NQNVRKARGSSVISSLSV 400
+ ++K G S I SV
Sbjct: 595 DNRMKKVPGCSSIEVDSV 612
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/340 (30%), Positives = 178/340 (52%), Gaps = 5/340 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++ + M + ++ I KSCT +H+H+LKLG + +V TSL++
Sbjct: 113 LEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINM 172
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y AR +FD+ R+AV++ +I GY+ G + EAR+ F+ +P+R+V SW+AMI
Sbjct: 173 YAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMI 232
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y +G + + F EM +TP+ T+ +VLS C+ GS L +G +I
Sbjct: 233 SGYAQSGRVEEAMAFFEEM-RRAKVTPNVSTMLSVLSACAQSGS-SLQLGNWVRSWIEDR 290
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
N ++ L+DMY KCG L+ A +FE ++++NV+SW +I G H ++AL LF
Sbjct: 291 GLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLF 350
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY-DLEPRIQHYGCMVDLFG 298
M + + PN++TF +L AC + G +D G+ +D+ ++ + + ++D++
Sbjct: 351 RRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYA 410
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
K G L A + M + ++ W + ++ H D A
Sbjct: 411 KCGDLAVAKRIFDCMNTK-SLATWNAMISGFAMHGHTDTA 449
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 96/350 (27%), Positives = 152/350 (43%), Gaps = 74/350 (21%)
Query: 11 SVPSDSFSILHILKSCTHFNN---LTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS-- 65
S PS + ++H S T +N L + +HS I+K G + + + A S L E+ S
Sbjct: 17 SDPSPPYKLVHDHPSLTLLSNCKTLQTLKQIHSQIIKTG-LHNTHFALSKLIEFCAVSPH 75
Query: 66 --FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL 123
+A LF + N V WN MI+G S +S S +A
Sbjct: 76 GDLSYALSLFKTIRNPNHVIWNHMIRGLS--------------------SSESPFLA--- 112
Query: 124 NAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWEL 183
L+ + MIS+ G P++ T ++ C+ + G GK H ++K E
Sbjct: 113 --------LEYYVHMISS-GTEPNEYTFPSIFKSCTKIR--GAHEGKQVHAHVLKLGLEH 161
Query: 184 NEQIATILVDMYAKCGFLKYALMVF----------------------------ELMEE-- 213
N + T L++MYA+ G L A +VF EL +E
Sbjct: 162 NAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIP 221
Query: 214 -RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK 272
R+V+SW A+I G A G E+A++ FE M+ V PN T VL+AC +G +
Sbjct: 222 VRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGN 281
Query: 273 YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
+ + E+ L I+ ++D++ K G LEEA + ++ + NV+ W
Sbjct: 282 WVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQ-DKNVVSW 330
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 98/214 (45%), Gaps = 34/214 (15%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF +M + ++ + + L IL +C + L LG H YV ++
Sbjct: 347 LGLFRRMMQSNIDPNDVTFLSILPACANLG-----------ALDLGKWVHAYVDKNM--- 392
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ + W ++I Y+K G++ A+ F+ M +++A+W+AMI+
Sbjct: 393 --------------KSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMIS 438
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
+ G D L LF M S EG PD +T VL+ C H G + L G+ +++ +
Sbjct: 439 GFAMHGHTDTALGLFSRMTS-EGFVPDDITFVGVLTACKHAGLLSL--GRRYFSSMIQ-D 494
Query: 181 WELNEQIA--TILVDMYAKCGFLKYALMVFELME 212
++++ ++ ++D++ + G A + + ME
Sbjct: 495 YKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNME 528
>gi|356541012|ref|XP_003538978.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g50270-like [Glycine max]
Length = 560
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 121/318 (38%), Positives = 192/318 (60%), Gaps = 5/318 (1%)
Query: 78 ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
+ + ++ ++ Y K G+ +A F +P R+V W+ ++A Y+ + + L+ F +
Sbjct: 241 QLDGYVFSALMDMYFKCGHCEDACKVFNELPHRDVVCWTVLVAGYVQSNKFQDALRAFWD 300
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
M+S + + P+ T+ +VLS C+ +G+ L G+ H +I N+ +N + T LVDMYAK
Sbjct: 301 MLS-DNVAPNDFTLSSVLSACAQMGA--LDQGRLVHQYIECNKINMNVTLGTALVDMYAK 357
Query: 198 CGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGV 257
CG + AL VFE M +NV +WT +I G A G + AL++F M +G++PNE+TF GV
Sbjct: 358 CGSIDEALRVFENMPVKNVYTWTVIINGLAVHGDALGALNIFCCMLKSGIQPNEVTFVGV 417
Query: 258 LTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEP 317
L AC H G V+EG++ F+++ Y L+P + HYGCMVD+ G+AG+LE+A ++I M ++P
Sbjct: 418 LAACSHGGFVEEGKRLFELMKHAYHLKPEMDHYGCMVDMLGRAGYLEDAKQIIDNMPMKP 477
Query: 318 NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERV 377
+ + G+ AC HK F+M E + L + + N G + L+ +LY M + WE A +V
Sbjct: 478 SPGVLGALFGACLVHKAFEMGEHI--GNLLVNQQPNHSGSYALLANLYKMCQNWEAAAQV 535
Query: 378 RKLMLNQNVRKARGSSVI 395
RKLM V KA G S I
Sbjct: 536 RKLMKGLRVVKAPGYSRI 553
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 135/287 (47%), Gaps = 38/287 (13%)
Query: 38 LHSHILKLGFISHVYVATSLLHEYVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGN 96
+++ I KLGF +++ +L+ + + F AR++FDE P ++ V W +I GY K+
Sbjct: 129 IYAQIFKLGFDLDLFIGNALIPAFANSGFVESARQVFDESPFQDTVAWTALINGYVKNDC 188
Query: 97 VCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLS 156
EA F +M LR+ + D +T+ ++L
Sbjct: 189 PGEALKCFVKMRLRDRSV--------------------------------DAVTVASILR 216
Query: 157 GCSHLGSVGLLMGKSAHGFIVK-NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERN 215
+ +G G+ HGF V+ +L+ + + L+DMY KCG + A VF + R+
Sbjct: 217 AAALVGDADF--GRWVHGFYVEAGRVQLDGYVFSALMDMYFKCGHCEDACKVFNELPHRD 274
Query: 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275
V+ WT L+ G +DAL F M + V PN+ T + VL+AC G +D+GR +
Sbjct: 275 VVCWTVLVAGYVQSNKFQDALRAFWDMLSDNVAPNDFTLSSVLSACAQMGALDQGRLVHQ 334
Query: 276 MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
I E + + +VD++ K G ++EA V M ++ NV W
Sbjct: 335 YI-ECNKINMNVTLGTALVDMYAKCGSIDEALRVFENMPVK-NVYTW 379
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 111/271 (40%), Gaps = 14/271 (5%)
Query: 91 YSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF-REMISNEGLTPDQM 149
+S++ N C F+ + N + MIAA P + L + +G+ PD+
Sbjct: 56 FSQNQNTCLLL-LFDTINTPNTRLLNKMIAA-----CSHPHISLLCYAKLRQKGVQPDKH 109
Query: 150 TIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFE 209
T +L S + M + I K ++L+ I L+ +A GF++ A VF+
Sbjct: 110 TFPLLLKTFSKSIAQNPFM---IYAQIFKLGFDLDLFIGNALIPAFANSGFVESARQVFD 166
Query: 210 LMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
++ ++WTALI G +AL F M+ + +T +L A G D
Sbjct: 167 ESPFQDTVAWTALINGYVKNDCPGEALKCFVKMRLRDRSVDAVTVASILRAAALVGDADF 226
Query: 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAAC 329
GR E ++ + ++D++ K G E+A +V + +V+ W +A
Sbjct: 227 GRWVHGFYVEAGRVQLDGYVFSALMDMYFKCGHCEDACKVFNELP-HRDVVCWTVLVAGY 285
Query: 330 KEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
+ +F A R L ND FTL
Sbjct: 286 VQSNKFQDALRAFWDMLSDNVAPND---FTL 313
>gi|224137724|ref|XP_002322628.1| predicted protein [Populus trichocarpa]
gi|222867258|gb|EEF04389.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 123/326 (37%), Positives = 189/326 (57%), Gaps = 6/326 (1%)
Query: 72 LFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPG 131
LF+ +PERN +WNTMI G+ ++G + AR F MP +NV SW+ MI Y+ G +
Sbjct: 184 LFERMPERNLSSWNTMITGFIQNGELAWARKVFNEMPEKNVVSWTTMITGYVQEGESESA 243
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
LK+F EMI + G P++ T VL CS + GL G+ H I K+ ++ +A+ L
Sbjct: 244 LKVFVEMIKDGGARPNEGTFVNVLGACSDMA--GLGEGQQVHLLISKSVYQDRTFVASAL 301
Query: 192 VDMYAKCGFLKYALMVFE--LMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP 249
++MY+KCG L A +F+ ++ +R+++ W +I AH G +A+ LFE MQ G KP
Sbjct: 302 LNMYSKCGELSIARKIFDDVVISQRDLVLWNGMIAAYAHHGCGMEAIELFEDMQGLGFKP 361
Query: 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEV 309
N++++ +L+AC H GLVDEG YF + + ++ R H+ C+VDL G+AG L+EAY+
Sbjct: 362 NDVSYVELLSACSHAGLVDEGLNYFDELGRDNSIQLREDHHACLVDLCGRAGRLKEAYDF 421
Query: 310 IRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNE 369
I+ + + + IWG LA C H ++ + K+ L PEN G + L+ ++Y
Sbjct: 422 IKQLGTKASSSIWGGLLAGCNAHGDLEIGQLAAKE-LEKEDPEN-AGTYLLLSNIYASGR 479
Query: 370 KWEGAERVRKLMLNQNVRKARGSSVI 395
KW A RVR M + ++K G S I
Sbjct: 480 KWREASRVRLKMKEKGLKKQPGCSWI 505
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 155/312 (49%), Gaps = 24/312 (7%)
Query: 44 KLGFISHVYVATSLLHEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARD 102
++ I V T++L YV + A +LF+ +P +N V+WNTMI GY K+ V +A +
Sbjct: 31 RVDAIKDVVTWTAMLSGYVRLKRIEEAERLFEVMPVKNVVSWNTMIDGYGKNREVDKAIE 90
Query: 103 FFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGC---- 158
FERM RN+ SW+A+IAA + G + + F EM + ++ M +G SG
Sbjct: 91 VFERMHERNMVSWNAVIAALVQCGRVEEARRRFDEMPKRDVISWTTMVMGLARSGRVDEA 150
Query: 159 ---------SHLGSVGLLMGKSAHGFIVKNEWELNEQIA-------TILVDMYAKCGFLK 202
++ S ++ A + ++L E++ ++ + + G L
Sbjct: 151 RKVFDRMPERNVVSWNAMVTGYAKNMRLDEAFDLFERMPERNLSSWNTMITGFIQNGELA 210
Query: 203 YALMVFELMEERNVISWTALICGSAHRGYSEDALSLF-EMMQATGVKPNEMTFTGVLTAC 261
+A VF M E+NV+SWT +I G G SE AL +F EM++ G +PNE TF VL AC
Sbjct: 211 WARKVFNEMPEKNVVSWTTMITGYVQEGESESALKVFVEMIKDGGARPNEGTFVNVLGAC 270
Query: 262 VHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRL-EPNVI 320
+ EG++ +I + + R +++++ K G L A ++ + + + +++
Sbjct: 271 SDMAGLGEGQQVHLLISKSV-YQDRTFVASALLNMYSKCGELSIARKIFDDVVISQRDLV 329
Query: 321 IWGSFLAACKEH 332
+W +AA H
Sbjct: 330 LWNGMIAAYAHH 341
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 130/301 (43%), Gaps = 58/301 (19%)
Query: 78 ERNAVTWNTMIKGYSKSGNVCEARDFFERM-PLRNVASWSAMIAAYLNAGAYDPGLKLFR 136
ER+ VTW +I GY K G + +AR F+R+ +++V +W+AM++ Y+ + +LF
Sbjct: 3 ERDVVTWTAVISGYIKCGLIVDARRLFDRVDAIKDVVTWTAMLSGYVRLKRIEEAERLF- 61
Query: 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA 196
+ M + V+S W ++D Y
Sbjct: 62 ----------EVMPVKNVVS------------------------W-------NTMIDGYG 80
Query: 197 KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTG 256
K + A+ VFE M ERN++SW A+I G E+A F+ M K + +++T
Sbjct: 81 KNREVDKAIEVFERMHERNMVSWNAVIAALVQCGRVEEARRRFDEMP----KRDVISWTT 136
Query: 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE 316
++ +G VDE RK F + E + + MV + K L+EA+++ M E
Sbjct: 137 MVMGLARSGRVDEARKVFDRMPER-----NVVSWNAMVTGYAKNMRLDEAFDLFERMP-E 190
Query: 317 PNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAER 376
N+ W + + ++ + A +V + PE + +T + Y + E A +
Sbjct: 191 RNLSSWNTMITGFIQNGELAWARKVFNEM-----PEKNVVSWTTMITGYVQEGESESALK 245
Query: 377 V 377
V
Sbjct: 246 V 246
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 12/166 (7%)
Query: 18 SILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFDE- 75
+ +++L +C+ L +H I K + +VA++LL+ Y ARK+FD+
Sbjct: 262 TFVNVLGACSDMAGLGEGQQVHLLISKSVYQDRTFVASALLNMYSKCGELSIARKIFDDV 321
Query: 76 -LPERNAVTWNTMIKGYSKSGNVCEARDFFERMP----LRNVASWSAMIAAYLNAGAYDP 130
+ +R+ V WN MI Y+ G EA + FE M N S+ +++A +AG D
Sbjct: 322 VISQRDLVLWNGMIAAYAHHGCGMEAIELFEDMQGLGFKPNDVSYVELLSACSHAGLVDE 381
Query: 131 GLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
GL F E+ + + + ++ C G + K A+ FI
Sbjct: 382 GLNYFDELGRDNSIQLREDHHACLVDLCGRAGRL-----KEAYDFI 422
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 68/130 (52%), Gaps = 9/130 (6%)
Query: 211 MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
M ER+V++WTA+I G G DA LF+ + A + +T+T +L+ V ++E
Sbjct: 1 MHERDVVTWTAVISGYIKCGLIVDARRLFDRVDAI---KDVVTWTAMLSGYVRLKRIEEA 57
Query: 271 RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330
+ F+++ + + + M+D +GK +++A EV M E N++ W + +AA
Sbjct: 58 ERLFEVMPVK-----NVVSWNTMIDGYGKNREVDKAIEVFERMH-ERNMVSWNAVIAALV 111
Query: 331 EHKQFDMAER 340
+ + + A R
Sbjct: 112 QCGRVEEARR 121
>gi|224054634|ref|XP_002298341.1| predicted protein [Populus trichocarpa]
gi|222845599|gb|EEE83146.1| predicted protein [Populus trichocarpa]
Length = 429
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 140/410 (34%), Positives = 220/410 (53%), Gaps = 44/410 (10%)
Query: 7 MHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTS 65
M +Q + ++ F I +LK C H ++ LHS ILK S VYV +SL+ Y
Sbjct: 1 MQKQGLGANKFVIPSVLKCCGHVYDVQTGRILHSVILKYSIESDVYVISSLIDMYSKCGE 60
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEA---RDFFERMPLR-NVASWSAMIAA 121
AR++FD + E++ V N M+ GY + G E D E++ ++ NV +W+++I+
Sbjct: 61 VEKARRVFDRMVEKDLVALNAMLSGYGQHGFAKEGFALMDKMEKLGIKPNVITWNSLISG 120
Query: 122 YLNAGAYDPGLKLFREMISN----------------------------------EGLTPD 147
+ G K+F MISN G P
Sbjct: 121 FAQKGDDAMVSKMFELMISNGVEPDVISWTSVISGLVQNFRNEAAFDAFKQMLGRGFLPT 180
Query: 148 QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMV 207
TI VL+ C+ + +V G+ HG+ V E + + + LVDMYAKCGF+ A ++
Sbjct: 181 SATISTVLAACATMANV--RRGREIHGYAVVIRVEDDIYVRSALVDMYAKCGFISEASVL 238
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT-GVKPNEMTFTGVLTACVHTGL 266
F +M ERN ++W ++I G A+ GY ++A+ LF+ M+ + G K + +TFT VLTAC H G+
Sbjct: 239 FYMMPERNTVTWNSMIFGYANHGYCDEAIELFDQMEKSEGNKLDHLTFTAVLTACSHAGM 298
Query: 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
V+ G+ F ++ ++Y + PR++HY CMVDL G+AG L EAY++I+ M ++P++ +WG+ L
Sbjct: 299 VEHGQSLFLLMQQKYKIVPRLEHYACMVDLLGRAGNLNEAYDMIKKMPVKPDLFVWGALL 358
Query: 327 AACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAER 376
AC+ H +AE V + L ++PEN G L+ +LY WE R
Sbjct: 359 GACRNHGDIGLAE-VAARHLAELEPENAGNNM-LMSNLYADAGSWENVSR 406
>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 137/401 (34%), Positives = 216/401 (53%), Gaps = 42/401 (10%)
Query: 1 MQLFSQMHRQSVPS----DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATS 56
+Q F+ H+ S P+ D F+ +LK+C ++ +H+ + K GF S+++V
Sbjct: 75 IQFFN--HQVSSPNAPNPDEFTFTSVLKACAGLAHVVNGQKIHAMVTKQGFESNLFVR-- 130
Query: 57 LLHEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR--NVAS 114
N++I Y K+G + AR F+ M +R NV
Sbjct: 131 ----------------------------NSLIDMYFKAGYLLLARHLFDEMFVRDRNVVC 162
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
W+AMIA Y Y +++FR M G+ P+ +T+ +VL C+HLG++ L GK G
Sbjct: 163 WNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDL--GKWIDG 220
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
FI + E L + L DMYAKCG + A VF MEER+VISW+ +ICG A G++++
Sbjct: 221 FISRREMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHADE 280
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
A F M G KPN++ F G+LTAC H GLV +G F +D+EY + P+++HYGC+V
Sbjct: 281 AFGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVV 340
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
DL +AG L++A ++I +M ++PNVIIWG+ L C+ ++ +RV++ L + +
Sbjct: 341 DLLSRAGELDKAEDMISSMPMKPNVIIWGALLGGCRIYRDSGRGQRVVQHILEL--DSDH 398
Query: 355 GGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G + + ++Y+ + + A + R M V K G S I
Sbjct: 399 SGSYVYLANVYSSMGRLDDAAKCRLRMRENGVLKTPGCSWI 439
>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 716
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 129/400 (32%), Positives = 214/400 (53%), Gaps = 35/400 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF QM R V + F+ +L+SC NL + +H H+LK+G +V+V+
Sbjct: 228 VELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVS------ 281
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
N ++ Y+K G + + F +P RN +W+ MI
Sbjct: 282 ------------------------NALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIV 317
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y+ +G D L L++ M+ + + ++T +VL C+ L ++ L G H +K
Sbjct: 318 GYVQSGDGDKALSLYKNMLECQ-VQASEVTYSSVLRACASLAAMEL--GTQIHSLSLKTI 374
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
++ + + L+DMYAKCG +K A +VF+++ ER+ ISW A+I G + G +AL F+
Sbjct: 375 YDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQ 434
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
MMQ T PN++TF +L+AC + GL+D G+ YFK + ++Y +EP ++HY CMV L G++
Sbjct: 435 MMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRS 494
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G L++A ++I + LEPNV +W + L AC H D+ +Q L+ + P+ D L
Sbjct: 495 GHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQ-IDPQ-DEATHVL 552
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLSV 400
+ ++Y +W VRK M N+ V+K G S I + +
Sbjct: 553 LSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGI 592
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/346 (26%), Positives = 153/346 (44%), Gaps = 35/346 (10%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LFS++HR+ + F ILK + + LH+ I KLG S+ +V T+L+
Sbjct: 26 VDLFSRVHREGHELNPFVFTTILKLLVSVECAELAYSLHACIYKLGHESNAFVGTALIDA 85
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
Y V G+V AR F+ + +++ SW+ M+A
Sbjct: 86 YAVC------------------------------GSVNSARQAFDAIACKDMVSWTGMVA 115
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y + L+LF EM G P+ T VL C +G +GKS HG ++K
Sbjct: 116 CYAENDRFQDSLQLFAEM-RMVGFNPNHFTFAGVLKAC--IGLEAFSVGKSVHGCVLKTC 172
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+E++ + L+D+Y K G L VFE M + +VI W+ +I A S +A+ LF
Sbjct: 173 YEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFG 232
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ V PN+ TF VL +C + G++ + + L+ + ++D++ K
Sbjct: 233 QMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHV-LKVGLDGNVFVSNALMDVYAKC 291
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQAL 346
G L+ + ++ + N + W + + + D A + K L
Sbjct: 292 GRLDNSMKLFMELP-NRNEVTWNTMIVGYVQSGDGDKALSLYKNML 336
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/345 (24%), Positives = 139/345 (40%), Gaps = 72/345 (20%)
Query: 76 LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF 135
+P+RN V++ T+I+GY +S + E D F R+ LN + LKL
Sbjct: 1 MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHRE---------GHELNPFVFTTILKL- 50
Query: 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY 195
++S E C+ L S H I K E N + T L+D Y
Sbjct: 51 --LVSVE---------------CAELA-------YSLHACIYKLGHESNAFVGTALIDAY 86
Query: 196 AKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT 255
A CG + A F+ + ++++SWT ++ A +D+L LF M+ G PN TF
Sbjct: 87 AVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFA 146
Query: 256 GVLTAC--------------------------VHTGLVDEGRKYFKMIDEEYDLEPRIQH 289
GVL AC V GL+D K+ D E +H
Sbjct: 147 GVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKH 206
Query: 290 ----YGCMVDLFGKAGFLEEAYEVIRTMR---LEPNVIIWGSFLAACKEHKQFDMAERVI 342
+ M+ + ++ EA E+ MR + PN + S L +C + + ++V
Sbjct: 207 DVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQV- 265
Query: 343 KQALRMVKPENDGGVF--TLICDLYTMNEKWEGAERVRKLMLNQN 385
++K DG VF + D+Y + + + ++ + N+N
Sbjct: 266 --HCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRN 308
>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 129/329 (39%), Positives = 195/329 (59%), Gaps = 12/329 (3%)
Query: 74 DELPERNAVTWN-----TMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
+E N +T N +I Y K G++ AR F+ M ++ +W+AMI Y G
Sbjct: 251 EEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMS 310
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ +KLF++M PDQ+T+ +LS C+ +G++ L GK + + ++ + +
Sbjct: 311 EEAIKLFQDM-RMSSTAPDQITLIGILSACASIGALDL--GKQVEIYASERGFQDDVYVG 367
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG-- 246
T LVDMYAKCG L A VF M ++N +SW A+I A G +++AL+LF+ M G
Sbjct: 368 TALVDMYAKCGSLDNAFRVFYGMPKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGT 427
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
V PN++TF GVL+ACVH GLVDEGR+ F M+ + L P+I+HY CMVDLF +AG LEEA
Sbjct: 428 VSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEA 487
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366
++ + TM +P+ +I G+ L AC++ K D++ERV+K L + +P N G + + LY
Sbjct: 488 WDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLEL-EPSNSGN-YVISSKLYA 545
Query: 367 MNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+W+ + R+R LM + V K G S I
Sbjct: 546 NLRRWDDSARMRMLMKQKGVSKTPGCSWI 574
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 97/360 (26%), Positives = 178/360 (49%), Gaps = 43/360 (11%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++ +S+M + ++ + + +C++ + H +++ G +V+ SL+
Sbjct: 112 LEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITM 171
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y G ARK+FDE+ +++ V+WN+MI GYSK + EA
Sbjct: 172 YARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEA------------------- 212
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ LFREM+ G P++M++ +VL C LG + L G F+V+N
Sbjct: 213 ------------VGLFREMME-AGFQPNEMSLVSVLGACGELGDLKL--GTWVEEFVVEN 257
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ LN + + L+ MY KCG L A +F+ M++++ ++W A+I G A G SE+A+ LF
Sbjct: 258 KMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLF 317
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+ M+ + P+++T G+L+AC G +D G++ ++ E + + +VD++ K
Sbjct: 318 QDMRMSSTAPDQITLIGILSACASIGALDLGKQ-VEIYASERGFQDDVYVGTALVDMYAK 376
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
G L+ A+ V M + N + W + ++A H Q A + K + N+GG +
Sbjct: 377 CGSLDNAFRVFYGMP-KKNEVSWNAMISALAFHGQAQEALALFKSMM------NEGGTVS 429
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/355 (23%), Positives = 160/355 (45%), Gaps = 61/355 (17%)
Query: 8 HRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSF 66
+RQ++ SD F+ L L+ C L IH + +L + ++ S L++ + F
Sbjct: 27 NRQAL-SDKFNSL--LQQCLSIKQLKQIH---AQLL----TNSIHKPNSFLYKIADLKDF 76
Query: 67 GFARKLFDELPERNAVTWNTMIKGYSKSGNVCE-ARDFFERMPLRNVASWSAMIAAYLNA 125
+A F + + ++N MI+G S + N A +F+ RM
Sbjct: 77 AYASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFL--------------- 121
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
GL P+ +T + CS+L +V G+ H +++ + +
Sbjct: 122 -----------------GLKPNNLTYPFLFIACSNLLAVE--NGRMGHCSVIRRGLDEDG 162
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
++ L+ MYA+CG + A VF+ + +++++SW ++I G + ++ +A+ LF M
Sbjct: 163 HVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEA 222
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQ-HY---GCMVDLFGKAG 301
G +PNEM+ VL AC G + G EE+ +E ++ +Y ++ ++GK G
Sbjct: 223 GFQPNEMSLVSVLGACGELGDLKLGTWV-----EEFVVENKMTLNYFMGSALIHMYGKCG 277
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIK--QALRMVKPEND 354
L A + +M+ + + + W + + + Q M+E IK Q +RM D
Sbjct: 278 DLVSARRIFDSMK-KKDKVTWNAMITG---YAQNGMSEEAIKLFQDMRMSSTAPD 328
>gi|147804811|emb|CAN64701.1| hypothetical protein VITISV_037299 [Vitis vinifera]
Length = 1111
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 125/324 (38%), Positives = 195/324 (60%), Gaps = 7/324 (2%)
Query: 72 LFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPG 131
+ L + N N++I Y KSGN+ AR F R+P R++ +W+ +I++Y + G +
Sbjct: 795 MIKNLMDENVSVNNSLIDMYGKSGNLTIARRIFCRIP-RDIVTWNTLISSYAHCGHFAEA 853
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
L L+ +M+ E L P+ T+ VLS CSHL S L G+ H +I ++E N IAT L
Sbjct: 854 LSLYDKMVL-EDLKPNSATLVXVLSACSHLAS--LEEGEKVHNYINGGKFEFNLSIATAL 910
Query: 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE 251
+DMYAKCG L+ + +F M ER+VI+W +I G G + A+ F+ M+ + KPN
Sbjct: 911 IDMYAKCGQLEKSREIFNSMHERDVITWNVMISGYGMHGDARSAIEXFQQMEESSAKPNG 970
Query: 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR 311
+TF VL+AC H GLV EG+ F + ++Y + P ++HY CMVDL G++G L+EA ++
Sbjct: 971 LTFLAVLSACAHAGLVKEGKYLFGKM-QDYSVAPNLKHYACMVDLLGRSGNLQEAEALVL 1029
Query: 312 TMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKW 371
+M + P+ +WG+ L++CK H + +M R+ K A+ END G + +I ++Y+ KW
Sbjct: 1030 SMPISPDGGVWGALLSSCKIHNEIEMGIRIAKHAI-XSDVEND-GYYVMISNMYSSIGKW 1087
Query: 372 EGAERVRKLMLNQNVRKARGSSVI 395
E AE+ R +M + VRK G S +
Sbjct: 1088 EEAEKARGIMKERGVRKKTGWSAV 1111
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 93/335 (27%), Positives = 151/335 (45%), Gaps = 42/335 (12%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F +M + D I +L S ++ + H I++ + V +LL
Sbjct: 653 IDMFWEMLVSGIYPDGIVISCMLSSFSNSMRVFEAKAFHGLIIRRHYTLDQMVQNALLSM 712
Query: 61 YVVTSFGF---ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
Y FGF A K F + E+N WN M+ GY K G + +
Sbjct: 713 YC--KFGFLKLAEKFFGRVNEQNFEAWNLMVSGYGKIGLIMKC----------------- 753
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
+ LFREM G+ D ++ +V+S CS LG+ L +S H +++
Sbjct: 754 --------------IGLFREM-QCLGIESDSNSLVSVVSSCSQLGATHL--ARSIHCYMI 796
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
KN + N + L+DMY K G L A +F + R++++W LI AH G+ +ALS
Sbjct: 797 KNLMDENVSVNNSLIDMYGKSGNLTIARRIFCRI-PRDIVTWNTLISSYAHCGHFAEALS 855
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
L++ M +KPN T VL+AC H ++EG K I+ E + ++D++
Sbjct: 856 LYDKMVLEDLKPNSATLVXVLSACSHLASLEEGEKVHNYINGG-KFEFNLSIATALIDMY 914
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
K G LE++ E+ +M E +VI W ++ H
Sbjct: 915 AKCGQLEKSREIFNSMH-ERDVITWNVMISGYGMH 948
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 126/248 (50%), Gaps = 8/248 (3%)
Query: 82 VTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISN 141
V ++++ YSK GN EA F + +++ SW++MI+AY G + +F EM+ +
Sbjct: 603 VVQSSLLSMYSKCGNPEEAHRSFCEVLNKDIISWTSMISAYSRMGWATECIDMFWEMLVS 662
Query: 142 EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFL 201
G+ PD + I +LS S+ S+ + K+ HG I++ + L++ + L+ MY K GFL
Sbjct: 663 -GIYPDGIVISCMLSSFSN--SMRVFEAKAFHGLIIRRHYTLDQMVQNALLSMYCKFGFL 719
Query: 202 KYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261
K A F + E+N +W ++ G G + LF MQ G++ + + V+++C
Sbjct: 720 KLAEKFFGRVNEQNFEAWNLMVSGYGKIGLIMKCIGLFREMQCLGIESDSNSLVSVVSSC 779
Query: 262 VHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVI 320
G R + MI D + + ++D++GK+G L A + R+ +++
Sbjct: 780 SQLGATHLARSIHCYMIKNLMDENVSVNN--SLIDMYGKSGNLTIARRIF--CRIPRDIV 835
Query: 321 IWGSFLAA 328
W + +++
Sbjct: 836 TWNTLISS 843
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 106/201 (52%), Gaps = 12/201 (5%)
Query: 109 LRNVASWSAMIAAYLNAGAYDPGLKLFREM--ISNEGLTPDQMTIGAVLSGCSHLGSVGL 166
+RNV W ++N G GL+ EM I +G P+ T+ C +LG+ L
Sbjct: 531 IRNVEFWRR----HMN-GESKMGLECLCEMHRIGGDGERPNFRTLEGGFQACGNLGA--L 583
Query: 167 LMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGS 226
L G+ HG +VK + ++ + + L+ MY+KCG + A F + +++ISWT++I
Sbjct: 584 LEGRCLHGLVVKTGMDYSQVVQSSLLSMYSKCGNPEEAHRSFCEVLNKDIISWTSMISAY 643
Query: 227 AHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKM-IDEEYDLEP 285
+ G++ + + +F M +G+ P+ + + +L++ ++ V E + + + I Y L+
Sbjct: 644 SRMGWATECIDMFWEMLVSGIYPDGIVISCMLSSFSNSMRVFEAKAFHGLIIRRHYTLDQ 703
Query: 286 RIQHYGCMVDLFGKAGFLEEA 306
+Q+ ++ ++ K GFL+ A
Sbjct: 704 MVQN--ALLSMYCKFGFLKLA 722
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 115/280 (41%), Gaps = 40/280 (14%)
Query: 68 FARKLFDELPER----NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL 123
A K ++++ ER + TW + GY K + + D+FE+ + +V W
Sbjct: 384 MAEKFYNQMVERGITPSYTTWELLTWGYLKKKQMEKVLDYFEK-AVGSVKKW-------- 434
Query: 124 NAGAYDPGLKLFREMISN---EGLTPDQMTIGAVLSGCSHLGSV---GLLMGKSAHG--- 174
+P KL RE+ N +G + +L H+ + LL + G
Sbjct: 435 -----NPDEKLVREVYKNLEEQGNIEGAEKVLVILRKAGHVSTEIYNWLLRAYAKAGKMP 489
Query: 175 -----FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR 229
++ K++ E++E+ ++ + C + ++ + RNV W + G +
Sbjct: 490 LIVAEWMKKDKVEMDEETHRLIKETSKMCXVQRLDPLLCICI--RNVEFWRRHMNGESKM 547
Query: 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE-YDLEPRIQ 288
G + L + G +PN T G AC + G + EGR ++ + D +Q
Sbjct: 548 GL--ECLCEMHRIGGDGERPNFRTLEGGFQACGNLGALLEGRCLHGLVVKTGMDYSQVVQ 605
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
++ ++ K G EEA+ + L ++I W S ++A
Sbjct: 606 --SSLLSMYSKCGNPEEAHRSFCEV-LNKDIISWTSMISA 642
>gi|224115616|ref|XP_002332100.1| predicted protein [Populus trichocarpa]
gi|222874920|gb|EEF12051.1| predicted protein [Populus trichocarpa]
Length = 474
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 139/404 (34%), Positives = 223/404 (55%), Gaps = 14/404 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF+ M P +S + ++K+ TH + L + LH+ + G + ++ TSLL
Sbjct: 73 LHLFALMLAHQTPPNSHTFPSVIKAATH-SCLFIGTSLHTQAINRGVLYDPFIQTSLLGM 131
Query: 61 YVVTSFGF---ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
Y + FG+ A K+FDE+ V +N + Y+K+G++ A F+ MP R+V SW++
Sbjct: 132 Y--SQFGYLLNACKVFDEISHPCIVEYNATLDAYAKNGDMGSACCLFKSMPKRDVVSWTS 189
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLT-----PDQMTIGAVLSGCSHLGSVGLL-MGKS 171
+I + G + ++LFREM+ ++ + P++ T +VLS C++L G+L +GK
Sbjct: 190 VINGFAKNGLFGEAIRLFREMMLHDDVKCCFVKPNEATYVSVLSSCANLDERGVLCIGKQ 249
Query: 172 AHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGY 231
HG+IV+NE + I T L+D Y K G L A+ V+ M + V +W A+I A+ G
Sbjct: 250 IHGYIVRNEVFVTVFIGTTLIDFYGKVGCLSNAIRVYNQMMVKKVCTWNAIISSLANNGR 309
Query: 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG 291
E AL +F+ M+ G+ PNE+TF VLTAC LV+ G + F+ + E+ L P ++HYG
Sbjct: 310 EEQALDMFKKMKGEGLCPNEVTFIAVLTACARAKLVEIGLELFQSMAGEFGLVPIMEHYG 369
Query: 292 CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351
C+VDL G AG L EA E IR M EP+ G+ L ACK H D+ V + L + +P
Sbjct: 370 CVVDLLGMAGLLREASEFIRRMPFEPDASALGALLGACKIHGAIDLGNEVGSRLLEL-QP 428
Query: 352 ENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++ G + + ++ +W A +RK M+ +R S+I
Sbjct: 429 QH-CGQYVALSSIHVGVNRWGVAADIRKTMVEARIRIVPACSLI 471
>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
from Arabidopsis thaliana BAC F28A21 gi|T04867 and
contains multiple PPR PF|01535 repeats. EST gb|AI999742
comes from this gene. This gene may be cut off, partial
[Arabidopsis thaliana]
Length = 757
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 130/398 (32%), Positives = 225/398 (56%), Gaps = 10/398 (2%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+F ++H D ++ +L S L + +H +++K G + V ++++ Y
Sbjct: 239 MFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYG 298
Query: 63 VTSFGFAR-KLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR----NVASWSA 117
+ + LF++ A N I G S++G V +A + FE + NV SW++
Sbjct: 299 KSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTS 358
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
+IA G L+LFREM G+ P+ +TI ++L C ++ ++G G+S HGF V
Sbjct: 359 IIAGCAQNGKDIEALELFREM-QVAGVKPNHVTIPSMLPACGNIAALG--HGRSTHGFAV 415
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
+ N + + L+DMYAKCG + + +VF +M +N++ W +L+ G + G +++ +S
Sbjct: 416 RVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMS 475
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
+FE + T +KP+ ++FT +L+AC GL DEG KYFKM+ EEY ++PR++HY CMV+L
Sbjct: 476 IFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLL 535
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
G+AG L+EAY++I+ M EP+ +WG+ L +C+ D+AE + + L ++PEN G
Sbjct: 536 GRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAE-IAAEKLFHLEPENP-GT 593
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ ++Y W + +R M + ++K G S I
Sbjct: 594 YVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWI 631
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 95/391 (24%), Positives = 176/391 (45%), Gaps = 46/391 (11%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+FS+M + DS + ++ K C + V +H G +V S+ H Y+
Sbjct: 103 VFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYM 162
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR----NVASWSA 117
G ARK+FD + +++ VT + ++ Y++ G + E M N+ SW+
Sbjct: 163 RCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNG 222
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
+++ + +G + + +F++ I + G PDQ+T+ +VL S L MG+ HG+++
Sbjct: 223 ILSGFNRSGYHKEAVVMFQK-IHHLGFCPDQVTVSSVLPSVGD--SEMLNMGRLIHGYVI 279
Query: 178 KNEWELNEQIATILVDMYAKC-------------------------------GFLKYALM 206
K ++ + + ++DMY K G + AL
Sbjct: 280 KQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALE 339
Query: 207 VFELMEER----NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACV 262
+FEL +E+ NV+SWT++I G A G +AL LF MQ GVKPN +T +L AC
Sbjct: 340 MFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACG 399
Query: 263 HTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
+ + GR + L+ + ++D++ K G + + +++ M N++ W
Sbjct: 400 NIAALGHGRSTHGFAVRVHLLD-NVHVGSALIDMYAKCGRINLS-QIVFNMMPTKNLVCW 457
Query: 323 GSFLAACKEHKQFDMAERVIKQALRM-VKPE 352
S + H + + + +R +KP+
Sbjct: 458 NSLMNGFSMHGKAKEVMSIFESLMRTRLKPD 488
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/334 (20%), Positives = 135/334 (40%), Gaps = 72/334 (21%)
Query: 87 MIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
+I YS +A + +P + S+S++I A A + + +F M S+ GL P
Sbjct: 56 LIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSH-GLIP 114
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
D + + C+ L + + GK H + +++ + + MY +CG + A
Sbjct: 115 DSHVLPNLFKVCAELSAFKV--GKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARK 172
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
VF+ M +++V++ +AL+C A +G E+ + + M+++G++ N +++ G+L+ +G
Sbjct: 173 VFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGY 232
Query: 267 VDEGRKYFKMI--------------------DEEYDLEPRIQH--------------YGC 292
E F+ I D E R+ H
Sbjct: 233 HKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISA 292
Query: 293 MVDLFGKAGFLE----------------------------------EAYEVIRTMRLEPN 318
M+D++GK+G + E +E+ + +E N
Sbjct: 293 MIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELN 352
Query: 319 VIIWGSFLAACKEH-KQFDMAERVIKQALRMVKP 351
V+ W S +A C ++ K + E + + VKP
Sbjct: 353 VVSWTSIIAGCAQNGKDIEALELFREMQVAGVKP 386
>gi|356574121|ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Glycine max]
Length = 548
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 133/398 (33%), Positives = 228/398 (57%), Gaps = 9/398 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F +M R V D + ++K+ N +H+HI+K G S ++ SL+H
Sbjct: 99 LSIFLKMLRLGVAPDYLTYPFLVKASARLLNQETGVSVHAHIIKTGHESDRFIQNSLIHM 158
Query: 61 YVVTSFG-FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y +A+K+FD + ++N V+WN+M+ GY+K G + A+ FE M ++V SWS++I
Sbjct: 159 YAACGNSMWAQKVFDSIQQKNVVSWNSMLDGYAKCGEMVMAQKAFESMSEKDVRSWSSLI 218
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y+ AG Y + +F +M S G +++T+ +V C+H+G+ L G+ + +IV N
Sbjct: 219 DGYVKAGEYSEAMAIFEKMQS-AGPKANEVTMVSVSCACAHMGA--LEKGRMIYKYIVDN 275
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELME--ERNVISWTALICGSAHRGYSEDALS 237
L + T LVDMYAKCG ++ AL++F + + +V+ W A+I G A G E++L
Sbjct: 276 GLPLTLVLQTSLVDMYAKCGAIEEALLIFRRVSKSQTDVLIWNAVIGGLATHGLVEESLK 335
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LF+ MQ G+ P+E+T+ +L AC H GLV E +F+ + + + P +HY CMVD+
Sbjct: 336 LFKEMQIVGICPDEVTYLCLLAACAHGGLVKEAWFFFESL-SKCGMTPTSEHYACMVDVL 394
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
+AG L AY+ I M EP + G+ L+ C H+ +AE ++ + L ++P +DG
Sbjct: 395 ARAGQLTTAYQFICQMPTEPTASMLGALLSGCINHRNLALAE-IVGRKLIELEPNHDGRY 453
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L ++Y ++++W+ A +R+ M + V+K+ G S +
Sbjct: 454 IGL-SNMYAVDKRWDDARSMREAMERRGVKKSPGFSFV 490
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 164/341 (48%), Gaps = 27/341 (7%)
Query: 16 SFSILHILKSCTHFNNLTVIHHLHSHILKLG------FISHVYVATSLLHEYVVTSFGFA 69
S ++L +L C ++ + LH+ ++ G FIS + ++L + ++
Sbjct: 14 SHNLLSLLDKC---KSILELKQLHAVVISCGLSQDDPFISKILCFSALSNS---GDINYS 67
Query: 70 RKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA----SWSAMIAAYLNA 125
++F +L +WNT+I+GYS S N ++ F +M VA ++ ++ A
Sbjct: 68 YRVFSQLSSPTIFSWNTIIRGYSNSKNPIQSLSIFLKMLRLGVAPDYLTYPFLVKASARL 127
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
+ G+ + +I G D+ +++ + G+ + K KN N
Sbjct: 128 LNQETGVSVHAHIIKT-GHESDRFIQNSLIHMYAACGN-SMWAQKVFDSIQQKNVVSWNS 185
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
++D YAKCG + A FE M E++V SW++LI G G +A+++FE MQ+
Sbjct: 186 -----MLDGYAKCGEMVMAQKAFESMSEKDVRSWSSLIDGYVKAGEYSEAMAIFEKMQSA 240
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFK-MIDEEYDLEPRIQHYGCMVDLFGKAGFLE 304
G K NE+T V AC H G +++GR +K ++D L +Q +VD++ K G +E
Sbjct: 241 GPKANEVTMVSVSCACAHMGALEKGRMIYKYIVDNGLPLTLVLQ--TSLVDMYAKCGAIE 298
Query: 305 EAYEVIRTM-RLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
EA + R + + + +V+IW + + H + + ++ K+
Sbjct: 299 EALLIFRRVSKSQTDVLIWNAVIGGLATHGLVEESLKLFKE 339
>gi|255558480|ref|XP_002520265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540484|gb|EEF42051.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 681
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 128/392 (32%), Positives = 219/392 (55%), Gaps = 6/392 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L ++M V DS +I IL +C+ N +H ++ K+G I V VA++ + Y
Sbjct: 292 LVNEMKNNRVQVDSSTITVILSACSSTGNAQYAKQMHGYVCKVGLIDSVIVASAFIDAYS 351
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+ A KLF EL + V N+MI Y G + +A++ FE MP +++ SW+++I
Sbjct: 352 KCRNPNDACKLFSELKAYDTVLLNSMITAYCNCGRIRDAKNIFETMPSKSLISWNSIIVG 411
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
L +F +M + L D+ ++ +V+S C+ + S L +G+ +
Sbjct: 412 LAQNAYPLEALDVFGKM-NKLDLRMDRFSLASVISACACISS--LELGEQVFARAIITGL 468
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
E ++ ++T LVD Y KCGF++ +F+ M + + +SW +++ G A GY + L+LF
Sbjct: 469 ESDQAVSTSLVDFYCKCGFIENGRKLFDSMIKTDEVSWNSMLMGYATNGYGLETLTLFNE 528
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M+ G++P ++TFTGVL+AC H GLV+EGRK+F ++ +Y ++P I+HY CMVDLF +AG
Sbjct: 529 MKQAGLRPTDITFTGVLSACDHCGLVEEGRKWFNIMKYDYHIDPGIEHYSCMVDLFARAG 588
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L+EA ++ M E + +W S L C H D+ ++V +Q +++ PE+ + +
Sbjct: 589 CLKEALNLVEHMPFEADCSMWSSVLRGCVAHGDKDLGKKVAQQIIQL-NPES-SSAYVQL 646
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
++ + WE + VRK+M + V+K G S
Sbjct: 647 SGIFATSGDWESSALVRKIMTEKQVKKHPGFS 678
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/352 (26%), Positives = 162/352 (46%), Gaps = 50/352 (14%)
Query: 18 SILHILKSCTHFNNLTVIHHLHSHILKLGFI-SHVYVATSLLHEYVVT--SFGFARKLFD 74
S+ +L+S +++ LH LK G I + V +A LL Y + A LFD
Sbjct: 7 SLARLLQSLNTHSSIHQGKQLHLLFLKKGLINATVSLANRLLQMYARCGGTMTDAHNLFD 66
Query: 75 ELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKL 134
E+PERN +WNTMI+GY + G+ + F+ MP +N SW+ +I+ + AG D KL
Sbjct: 67 EMPERNCFSWNTMIEGYMRVGDKERSLKLFDLMPQKNDYSWNVVISGFAKAGELDVAKKL 126
Query: 135 FREMISNEGLT---------------------------------PDQMTIGAVLSGCSHL 161
F EM G+ D + +V+ C+ L
Sbjct: 127 FNEMPRRNGVAWNSMIHGYARNGFAREAVGLFKELNSNPLEKSCGDTFVLASVIGACADL 186
Query: 162 GSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTA 221
G++ GK H I+ ++ EL+ + + L+++YAKCG L A V ++M+E + S +A
Sbjct: 187 GAIEY--GKQVHARILMDDVELDSVLISSLINLYAKCGHLDTANYVLKMMDEVDDFSLSA 244
Query: 222 LICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY 281
LI G A+ G DA+ +F T P + + +++ V+ E K F +++E
Sbjct: 245 LIMGYANCGRMSDAVRIFR----TKSNPCFVVWNSLISGYVNN---HEEMKAFALVNEMK 297
Query: 282 DLEPRIQHYGCMVDL-----FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
+ ++ V L G A + ++ + + + L +VI+ +F+ A
Sbjct: 298 NNRVQVDSSTITVILSACSSTGNAQYAKQMHGYVCKVGLIDSVIVASAFIDA 349
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 97/223 (43%), Gaps = 22/223 (9%)
Query: 169 GKSAHG-FIVKNEWELNEQIATILVDMYAKCG-FLKYALMVFELMEERNVISWTALICGS 226
GK H F+ K +A L+ MYA+CG + A +F+ M ERN SW +I G
Sbjct: 24 GKQLHLLFLKKGLINATVSLANRLLQMYARCGGTMTDAHNLFDEMPERNCFSWNTMIEGY 83
Query: 227 AHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR 286
G E +L LF++M + N+ ++ V++ G +D +K F + PR
Sbjct: 84 MRVGDKERSLKLFDLMP----QKNDYSWNVVISGFAKAGELDVAKKLFNEM-------PR 132
Query: 287 IQ--HYGCMVDLFGKAGFLEEAYEVIRTMRLEP------NVIIWGSFLAACKEHKQFDMA 338
+ M+ + + GF EA + + + P + + S + AC + +
Sbjct: 133 RNGVAWNSMIHGYARNGFAREAVGLFKELNSNPLEKSCGDTFVLASVIGACADLGAIEYG 192
Query: 339 ERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLM 381
++V + L M E D + + + +LY + A V K+M
Sbjct: 193 KQVHARIL-MDDVELDSVLISSLINLYAKCGHLDTANYVLKMM 234
>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 902
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 134/395 (33%), Positives = 211/395 (53%), Gaps = 35/395 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ ++ +M + V + + IL +C+ L +H +++ G + +V
Sbjct: 414 LTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVG------ 467
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
NT++ YS G+V +AR F+RM R++ +++AMI
Sbjct: 468 ------------------------NTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIG 503
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y LKLF + + EGL PD++T +L+ C++ GS L + H + K
Sbjct: 504 GYAAHNLGKEALKLF-DRLQEEGLKPDKVTYINMLNACANSGS--LEWAREIHTLVRKGG 560
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ + + LV YAKCG A +VFE M +RNVISW A+I GSA G +DAL LFE
Sbjct: 561 FFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFE 620
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ GVKP+ +TF +L+AC H GL++EGR+YF + +++ + P I+HYGCMVDL G+A
Sbjct: 621 RMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRA 680
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G L+EA +I+TM + N IWG+ L AC+ H +AER + +L++ ++ V+
Sbjct: 681 GQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKL--DLDNAVVYVA 738
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ +Y W+ A ++RKLM + V K G S I
Sbjct: 739 LSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWI 773
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 104/419 (24%), Positives = 185/419 (44%), Gaps = 67/419 (15%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L QM + + D +I+ L SC L +H ++ G + V VA
Sbjct: 111 LKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVA------ 164
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
N ++ Y+K G++ EAR+ F++M ++V SW+ I
Sbjct: 165 ------------------------NCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIG 200
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y + G + ++F++M EG+ P+++T +VL+ S L GK+ H I+
Sbjct: 201 GYADCGRSETAFEIFQKM-EQEGVVPNRITYISVLNAFS--SPAALKWGKAVHSRILNAG 257
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
E + + T LV MYAKCG K VFE + R++I+W +I G A GY E+A ++
Sbjct: 258 HESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYN 317
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE-------------------- 280
MQ GV PN++T+ +L ACV++ + G++ + +
Sbjct: 318 QMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCG 377
Query: 281 --------YD--LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR---LEPNVIIWGSFLA 327
+D + + + M+ K+GF EA V + M+ +EPN + + S L
Sbjct: 378 SIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILN 437
Query: 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386
AC + R+ +Q + D V + ++Y+M + A +V M+ +++
Sbjct: 438 ACSSPAALEWGRRIHQQVVE-AGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDI 495
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 162/332 (48%), Gaps = 37/332 (11%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
++F +M ++ V + + + +L + + L +HS IL G S V T+L+ Y
Sbjct: 213 EIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMY 272
Query: 62 V-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
S+ R++F++L R+ + WNTMI G ++ G EA + + +M
Sbjct: 273 AKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQM------------- 319
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
EG+ P+++T +L+ C + S L GK H + K
Sbjct: 320 -------------------QREGVMPNKITYVILLNAC--VNSAALHWGKEIHSRVAKAG 358
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ + + L+ MY++CG +K A +VF+ M ++VISWTA+I G A G+ +AL++++
Sbjct: 359 FTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQ 418
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
MQ GV+PN +T+T +L AC ++ GR+ + + E L +V+++
Sbjct: 419 EMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEA-GLATDAHVGNTLVNMYSMC 477
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
G +++A +V M ++ +++ + + + H
Sbjct: 478 GSVKDARQVFDRM-IQRDIVAYNAMIGGYAAH 508
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 162/344 (47%), Gaps = 39/344 (11%)
Query: 7 MHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSF 66
+ +Q +S + +LK C +L +H HI++ H V +
Sbjct: 14 LQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQ--------------HRTVPDQY 59
Query: 67 GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL--RNVASWSAMIAAYLN 124
T N +I Y + G++ EAR ++++ R V SW+AM+ Y+
Sbjct: 60 ----------------TVNALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQ 103
Query: 125 AGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN 184
G + LKL R+M GL PD+ TI + LS C G+ L G+ H ++ +
Sbjct: 104 YGYIEKALKLLRQM-QQHGLAPDRTTIMSFLSSCKSPGA--LEWGREIHFQAMQAGLLFD 160
Query: 185 EQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQA 244
++A +++MYAKCG ++ A VF+ ME+++V+SWT I G A G SE A +F+ M+
Sbjct: 161 VKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQ 220
Query: 245 TGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFL 303
GV PN +T+ VL A + G+ + ++++ ++ + + +V ++ K G
Sbjct: 221 EGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVG--TALVKMYAKCGSY 278
Query: 304 EEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALR 347
++ +V + + ++I W + + E ++ A V Q R
Sbjct: 279 KDCRQVFEKL-VNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQR 321
>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 681
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 146/458 (31%), Positives = 236/458 (51%), Gaps = 69/458 (15%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF ++ VP DSF++ +LK C L +H +LK+GF +V +SL+
Sbjct: 100 IALFCKLLCDFVP-DSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSM 158
Query: 61 YV-------------------VTSF-----GFAR--------KLFDELPERNAVTWNTMI 88
Y V S+ G+AR ++F+E+PE+++ +W +I
Sbjct: 159 YSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMPEKDSFSWTILI 218
Query: 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAG---------------------- 126
G SKSG + ARD F+RMP+RN SW+AMI Y+ AG
Sbjct: 219 DGLSKSGKLEAARDVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNS 278
Query: 127 ---------AYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
+ LKLF M+ E ++P+ TI +S S G V L G+ H +IV
Sbjct: 279 MITGYERNKQFTKALKLFEVML-REDISPNYTTILGAVSAAS--GMVSLGTGRWVHSYIV 335
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
K+ ++ + + T+L++MY+KCG +K AL VF + ++ + WT++I G G E L
Sbjct: 336 KSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLE 395
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LF+ M TG+KP+ +TF GVL AC H G ++ +YFKM+ +Y ++P I+HYGC++D+
Sbjct: 396 LFDEMCRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVL 455
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
+AG LEEA + I M ++ N +IW S L+ ++H M E + + + + G
Sbjct: 456 CRAGHLEEAKDTIERMPIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAP--DTTGC 513
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++ ++Y WE +VR++M + ++K G S I
Sbjct: 514 YVILSNMYAAAGLWEKVRQVREMMKKKGMKKDPGCSSI 551
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 146/315 (46%), Gaps = 48/315 (15%)
Query: 36 HHLHSHILKLGFISHVYVATSLLHEYV---VTSFGFARKLFDELPERNAVTWNTMIKGYS 92
+ LH+ +K ++H V++ LL Y + + +A LFD + E V+WN +
Sbjct: 32 NQLHALSIKTASLNHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTLVSWNLL----- 86
Query: 93 KSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIG 152
I Y+ + + LF +++ + PD T+
Sbjct: 87 --------------------------IKCYIENQRSNDAIALFCKLLCD--FVPDSFTLP 118
Query: 153 AVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME 212
VL GC+ LG+ L GK HG ++K + +++ + + LV MY+KCG ++ VF+ ME
Sbjct: 119 CVLKGCARLGA--LQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRME 176
Query: 213 ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK 272
+++V+SW +LI G A G E AL +FE M + + ++T ++ +G ++ R
Sbjct: 177 DKDVVSWNSLIDGYARCGEIELALEMFEEMP----EKDSFSWTILIDGLSKSGKLEAARD 232
Query: 273 YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
F + + + M++ + KAG A E+ M E +++ W S + + +
Sbjct: 233 VFDRMPIRNSVS-----WNAMINGYMKAGDSNTAKELFDQMP-ERSLVTWNSMITGYERN 286
Query: 333 KQFDMAERVIKQALR 347
KQF A ++ + LR
Sbjct: 287 KQFTKALKLFEVMLR 301
>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
Length = 687
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 137/428 (32%), Positives = 223/428 (52%), Gaps = 69/428 (16%)
Query: 32 LTVIHHLHSHILKLGFISHVYVATSLLHEY--------------------VVT------- 64
LT + H+H++KLG +V +L+ Y VV+
Sbjct: 217 LTPVRGAHAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAA 276
Query: 65 -----SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
AR +FDE+PE++ V+WNTM+ GY+K+G +A + F+RMP RNV SWS ++
Sbjct: 277 MVRQGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTVV 336
Query: 120 AAYLNAGAYD--------------------------PGL-----KLFREMISNEGLTPDQ 148
+AY G + GL +LF EM+ + + D
Sbjct: 337 SAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMM-DAAIELDV 395
Query: 149 MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVF 208
+ + ++L+ C+ GS+ L GK H + + + + + L+DM+ KCG + A +F
Sbjct: 396 IAVVSILAACAESGSLAL--GKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIF 453
Query: 209 EL-MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
+ + E++++SW +I G A G E AL LF M+ G P+ +T VL+AC H GLV
Sbjct: 454 DTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLV 513
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
+EGR++F ++ +Y ++P+I+HYGCMVDL G+ G ++EA ++I+ M EPN +IWGS L+
Sbjct: 514 EEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLS 573
Query: 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVR 387
AC+ HK + AE + + L ++P + G + ++ ++Y KW + R M +
Sbjct: 574 ACRLHKNVEYAELAVNE-LSNLQPSSAGN-YAVLSNIYAEAGKWSDMAKARVQMKGTGSQ 631
Query: 388 KARGSSVI 395
K GSS I
Sbjct: 632 KTAGSSWI 639
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 78/313 (24%), Positives = 136/313 (43%), Gaps = 47/313 (15%)
Query: 8 HRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS-- 65
HR+ V S+ H L H + LH+ +LK G + A+ L+ Y +
Sbjct: 93 HRRLVEEHLASLPHGLPRLRH------VQELHAQLLKQGLHRDPHTASKLIASYALLRRV 146
Query: 66 ------FGFARKLFDE-LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA--SWS 116
F A L + P + T+++ Y+ + A F +PLR ++S
Sbjct: 147 PACRCVFSAAVALPNSPFPSSTTLLTKTLLRAYALNSLPHAALAVFLDVPLRQRGTFTYS 206
Query: 117 AMIAAYLNAG----------------AYDP--GLKLFREMISNEGLTP-----DQMTIGA 153
+I A AG A D G L N+GL+ D+MT
Sbjct: 207 FLIKALAAAGLTPVRGAHAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRD 266
Query: 154 VLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA-TILVDMYAKCGFLKYALMVFELME 212
V+S + + ++ + G+ + +E + ++ ++D YAK G + A +F+ M
Sbjct: 267 VVSWNTAMAAM-VRQGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMP 325
Query: 213 ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE-GR 271
RNV+SW+ ++ +G E A +F+ M A N +T+T +++AC GLV+E GR
Sbjct: 326 GRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAK----NLVTWTIMVSACAQKGLVEEAGR 381
Query: 272 KYFKMIDEEYDLE 284
+ +M+D +L+
Sbjct: 382 LFTEMMDAAIELD 394
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 99/229 (43%), Gaps = 44/229 (19%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+LF++M ++ D +++ IL +C +L + +H H+ + V +L+ +
Sbjct: 381 RLFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMF 440
Query: 62 V-VTSFGFARKLFD-ELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
A +FD E+ E++ V+WN +I G++ G +A + F +M
Sbjct: 441 CKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQM------------ 488
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI--V 177
+G PD +T+ VLS C+H+G V + F +
Sbjct: 489 --------------------KQQGFHPDAVTLINVLSACTHMGLV-----EEGRRFFANM 523
Query: 178 KNEWELNEQIA--TILVDMYAKCGFLKYAL-MVFELMEERNVISWTALI 223
+ ++ + QI +VD+ + G +K A+ M+ + E N + W +L+
Sbjct: 524 ETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLL 572
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 81/184 (44%), Gaps = 10/184 (5%)
Query: 161 LGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWT 220
L + GL + AH +VK + + L+D Y+K L A VF+ M R+V+SW
Sbjct: 212 LAAAGLTPVRGAHAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWN 271
Query: 221 ALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE 280
+ +G + A S+F+ M + + +++ +L G ++ + F+ +
Sbjct: 272 TAMAAMVRQGEVDAARSMFDEMP----EKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGR 327
Query: 281 YDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAER 340
+ + +V + K G +E A + M + N++ W ++AC + + A R
Sbjct: 328 -----NVVSWSTVVSAYCKKGDMEMARVIFDKMPAK-NLVTWTIMVSACAQKGLVEEAGR 381
Query: 341 VIKQ 344
+ +
Sbjct: 382 LFTE 385
>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
gi|194696634|gb|ACF82401.1| unknown [Zea mays]
Length = 615
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 137/428 (32%), Positives = 223/428 (52%), Gaps = 69/428 (16%)
Query: 32 LTVIHHLHSHILKLGFISHVYVATSLLHEY--------------------VVT------- 64
LT + H+H++KLG +V +L+ Y VV+
Sbjct: 145 LTPVRGAHAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAA 204
Query: 65 -----SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
AR +FDE+PE++ V+WNTM+ GY+K+G +A + F+RMP RNV SWS ++
Sbjct: 205 MVRQGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTVV 264
Query: 120 AAYLNAGAYD--------------------------PGL-----KLFREMISNEGLTPDQ 148
+AY G + GL +LF EM+ + + D
Sbjct: 265 SAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMM-DAAIELDV 323
Query: 149 MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVF 208
+ + ++L+ C+ GS+ L GK H + + + + + L+DM+ KCG + A +F
Sbjct: 324 IAVVSILAACAESGSLAL--GKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIF 381
Query: 209 EL-MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
+ + E++++SW +I G A G E AL LF M+ G P+ +T VL+AC H GLV
Sbjct: 382 DTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLV 441
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
+EGR++F ++ +Y ++P+I+HYGCMVDL G+ G ++EA ++I+ M EPN +IWGS L+
Sbjct: 442 EEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLS 501
Query: 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVR 387
AC+ HK + AE + + L ++P + G + ++ ++Y KW + R M +
Sbjct: 502 ACRLHKNVEYAELAVNE-LSNLQPSSAGN-YAVLSNIYAEAGKWSDMAKARVQMKGTGSQ 559
Query: 388 KARGSSVI 395
K GSS I
Sbjct: 560 KTAGSSWI 567
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 78/313 (24%), Positives = 136/313 (43%), Gaps = 47/313 (15%)
Query: 8 HRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS-- 65
HR+ V S+ H L H + LH+ +LK G + A+ L+ Y +
Sbjct: 21 HRRLVEEHLASLPHGLPRLRH------VQELHAQLLKQGLHRDPHTASKLIASYALLRRV 74
Query: 66 ------FGFARKLFDE-LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA--SWS 116
F A L + P + T+++ Y+ + A F +PLR ++S
Sbjct: 75 PACRCVFSAAVALPNSPFPSSTTLLTKTLLRAYALNSLPHAALAVFLDVPLRQRGTFTYS 134
Query: 117 AMIAAYLNAG----------------AYDP--GLKLFREMISNEGLTP-----DQMTIGA 153
+I A AG A D G L N+GL+ D+MT
Sbjct: 135 FLIKALAAAGLTPVRGAHAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRD 194
Query: 154 VLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA-TILVDMYAKCGFLKYALMVFELME 212
V+S + + ++ + G+ + +E + ++ ++D YAK G + A +F+ M
Sbjct: 195 VVSWNTAMAAM-VRQGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMP 253
Query: 213 ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE-GR 271
RNV+SW+ ++ +G E A +F+ M A N +T+T +++AC GLV+E GR
Sbjct: 254 GRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAK----NLVTWTIMVSACAQKGLVEEAGR 309
Query: 272 KYFKMIDEEYDLE 284
+ +M+D +L+
Sbjct: 310 LFTEMMDAAIELD 322
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 99/229 (43%), Gaps = 44/229 (19%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+LF++M ++ D +++ IL +C +L + +H H+ + V +L+ +
Sbjct: 309 RLFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMF 368
Query: 62 V-VTSFGFARKLFD-ELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
A +FD E+ E++ V+WN +I G++ G +A + F +M
Sbjct: 369 CKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQM------------ 416
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI--V 177
+G PD +T+ VLS C+H+G V + F +
Sbjct: 417 --------------------KQQGFHPDAVTLINVLSACTHMGLV-----EEGRRFFANM 451
Query: 178 KNEWELNEQIA--TILVDMYAKCGFLKYAL-MVFELMEERNVISWTALI 223
+ ++ + QI +VD+ + G +K A+ M+ + E N + W +L+
Sbjct: 452 ETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLL 500
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 81/184 (44%), Gaps = 10/184 (5%)
Query: 161 LGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWT 220
L + GL + AH +VK + + L+D Y+K L A VF+ M R+V+SW
Sbjct: 140 LAAAGLTPVRGAHAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWN 199
Query: 221 ALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE 280
+ +G + A S+F+ M + + +++ +L G ++ + F+ +
Sbjct: 200 TAMAAMVRQGEVDAARSMFDEMP----EKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGR 255
Query: 281 YDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAER 340
+ + +V + K G +E A + M + N++ W ++AC + + A R
Sbjct: 256 -----NVVSWSTVVSAYCKKGDMEMARVIFDKMPAK-NLVTWTIMVSACAQKGLVEEAGR 309
Query: 341 VIKQ 344
+ +
Sbjct: 310 LFTE 313
>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 592
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 130/393 (33%), Positives = 217/393 (55%), Gaps = 36/393 (9%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV 63
+ +M ++ S +++ ++KS ++ +H H+ G+ YV +L+
Sbjct: 106 YRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGLDAYVQAALV----- 160
Query: 64 TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL 123
SF Y+KSG+V AR F++MP + V +W++MI+ Y
Sbjct: 161 -SF------------------------YAKSGHVMIARKVFDKMPEKTVVAWNSMISGYE 195
Query: 124 NAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWEL 183
G ++LF ++ + G+ PD T ++LS C+ +G++GL G H +I +N ++L
Sbjct: 196 QNGFGKEAVELFF-LMQDLGVKPDSSTFVSLLSACAQVGAIGL--GFWVHEYIARNCFDL 252
Query: 184 NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQ 243
N + T L++MY++CG + A VF+ MEE+N+++WTA+I G G+ A+ LF M
Sbjct: 253 NVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMS 312
Query: 244 ATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFL 303
G +PN +TF VL+AC H GLVDEGR+ F + +EY L P ++H CMVD+ G+AG L
Sbjct: 313 FDGPRPNNVTFVAVLSACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHL 372
Query: 304 EEAYEVIR-TMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362
EAY+ I+ T EP +W + L ACK HK FD+ V + L ++PEN G + ++
Sbjct: 373 NEAYQFIKNTSPKEPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS-IEPENPGH-YVMLS 430
Query: 363 DLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y + + + E++R +M+ ++K G S I
Sbjct: 431 NIYALAGRMDRVEKIRNIMIRNRLKKEVGYSTI 463
>gi|356558692|ref|XP_003547637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Glycine max]
Length = 696
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 134/406 (33%), Positives = 219/406 (53%), Gaps = 16/406 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF M + + + ++ +L C + +H +++K G+ +++V +L+
Sbjct: 253 LELFKVMRTRGIEIGAEALAVVLSVCADMAEVDWGKEIHGYVVKGGYEDYLFVKNALIGT 312
Query: 61 YVV-TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR--------- 110
Y G A K+F E+ +N V+WN +I Y++SG EA F M
Sbjct: 313 YGKHQHMGDAHKVFLEIKNKNLVSWNALISSYAESGLCDEAYAAFLHMEKSDSDDHSLVR 372
Query: 111 -NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMG 169
NV SWSA+I+ + G + L+LFR+M + + +TI +VLS C+ L ++ L G
Sbjct: 373 PNVISWSAVISGFAYKGRGEKSLELFRQM-QLAKVMANCVTISSVLSVCAELAALNL--G 429
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR 229
+ HG+ ++N N + L++MY KCG K +VF+ +E R++ISW +LI G
Sbjct: 430 RELHGYAIRNMMSDNILVGNGLINMYMKCGDFKEGHLVFDNIEGRDLISWNSLIGGYGMH 489
Query: 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQH 289
G E+AL F M +KP+ +TF +L+AC H GLV GR F + E+ +EP ++H
Sbjct: 490 GLGENALRTFNEMIRARMKPDNITFVAILSACSHAGLVAAGRNLFDQMVTEFRIEPNVEH 549
Query: 290 YGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349
Y CMVDL G+AG L+EA +++R M +EPN +WG+ L +C+ +K D+ E Q L +
Sbjct: 550 YACMVDLLGRAGLLKEATDIVRNMPIEPNEYVWGALLNSCRMYKDMDIVEETASQILTL- 608
Query: 350 KPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G F L+ ++Y N +W+ + RVR + ++K G S I
Sbjct: 609 -KSKITGSFMLLSNIYAANGRWDDSARVRVSARTKGLKKIPGQSWI 653
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 104/400 (26%), Positives = 183/400 (45%), Gaps = 52/400 (13%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L+ +M + D F++ ++++C+ + + +H H L++GF +H++V L+
Sbjct: 117 LELYVEMRKLGFLPDGFTLPLVIRACSSLGSSYLCRIVHCHALQMGFRNHLHVVNELVGM 176
Query: 61 Y-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR----NVASW 115
Y + AR+LFD + R+ V+WNTM+ GY+ + + A F+RM L N +W
Sbjct: 177 YGKLGRMEDARQLFDGMFVRSIVSWNTMVSGYALNRDSLGASRVFKRMELEGLQPNSVTW 236
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
+++++++ G YD L+LF+ M G+ + VLS C+ + V GK HG+
Sbjct: 237 TSLLSSHARCGLYDETLELFKVM-RTRGIEIGAEALAVVLSVCADMAEVD--WGKEIHGY 293
Query: 176 IVKNEWE-----LNEQIAT--------------------------ILVDMYAKCGFLKYA 204
+VK +E N I T L+ YA+ G A
Sbjct: 294 VVKGGYEDYLFVKNALIGTYGKHQHMGDAHKVFLEIKNKNLVSWNALISSYAESGLCDEA 353
Query: 205 LMVFELMEER----------NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTF 254
F ME+ NVISW+A+I G A++G E +L LF MQ V N +T
Sbjct: 354 YAAFLHMEKSDSDDHSLVRPNVISWSAVISGFAYKGRGEKSLELFRQMQLAKVMANCVTI 413
Query: 255 TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR 314
+ VL+ C ++ GR+ + I +++++ K G +E + V +
Sbjct: 414 SSVLSVCAELAALNLGRELHGYAIRNM-MSDNILVGNGLINMYMKCGDFKEGHLVFDNIE 472
Query: 315 LEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-VKPEN 353
++I W S + H + A R + +R +KP+N
Sbjct: 473 -GRDLISWNSLIGGYGMHGLGENALRTFNEMIRARMKPDN 511
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 103/194 (53%), Gaps = 6/194 (3%)
Query: 87 MIKGYSKSGNVCEARDFFERMPLRNVAS---WSAMIAAYLNAGAYDPGLKLFREMISNEG 143
+I Y++ + AR F+ +PL ++ W+++I A ++ G + L+L+ EM G
Sbjct: 69 LIAVYARFAFLSHARKVFDAIPLESLHHLLLWNSIIRANVSHGYHQHALELYVEM-RKLG 127
Query: 144 LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKY 203
PD T+ V+ CS LGS L + H ++ + + + LV MY K G ++
Sbjct: 128 FLPDGFTLPLVIRACSSLGSSYLC--RIVHCHALQMGFRNHLHVVNELVGMYGKLGRMED 185
Query: 204 ALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263
A +F+ M R+++SW ++ G A S A +F+ M+ G++PN +T+T +L++
Sbjct: 186 ARQLFDGMFVRSIVSWNTMVSGYALNRDSLGASRVFKRMELEGLQPNSVTWTSLLSSHAR 245
Query: 264 TGLVDEGRKYFKMI 277
GL DE + FK++
Sbjct: 246 CGLYDETLELFKVM 259
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 80/173 (46%), Gaps = 29/173 (16%)
Query: 187 IATILVDMYAKCGFLKYALMVFE---LMEERNVISWTALICGSAHRGYSEDALSLFEMMQ 243
+A L+ +YA+ FL +A VF+ L +++ W ++I + GY + AL L+ M+
Sbjct: 65 LAARLIAVYARFAFLSHARKVFDAIPLESLHHLLLWNSIIRANVSHGYHQHALELYVEMR 124
Query: 244 ATGVKPNEMTFTGVLTAC-----------VHTGLVDEG-RKYFKMIDEEYDLEPRIQHYG 291
G P+ T V+ AC VH + G R + +++E
Sbjct: 125 KLGFLPDGFTLPLVIRACSSLGSSYLCRIVHCHALQMGFRNHLHVVNE------------ 172
Query: 292 CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
+V ++GK G +E+A ++ M + +++ W + ++ ++ A RV K+
Sbjct: 173 -LVGMYGKLGRMEDARQLFDGMFVR-SIVSWNTMVSGYALNRDSLGASRVFKR 223
>gi|119638439|gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvaticum]
Length = 618
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 122/358 (34%), Positives = 202/358 (56%), Gaps = 36/358 (10%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEA---------------------------- 100
AR LFD +PERN V+WN MI GY+++ + EA
Sbjct: 210 ARALFDGMPERNVVSWNAMISGYARNHRIDEAHDLFMKMPTRDIASWNIMITGFIQDRDL 269
Query: 101 ---RDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSG 157
+D F++MP RNV +W+ M+ YL + + L++F M+ EG+ P+Q+T +
Sbjct: 270 ERAQDLFDKMPRRNVITWTTMMNGYLQSMQSETALQIFNGMLV-EGIRPNQVTFLGAVDA 328
Query: 158 CSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVI 217
CS+L GL G+ H I K ++ + I + L+++YAKCG ++ A VF+L +E++VI
Sbjct: 329 CSNLA--GLSEGQQVHQMICKTSFQFDTFIESTLMNLYAKCGEIRLARKVFDLSKEKDVI 386
Query: 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI 277
SW +I AH G +A+ L+E MQ G KPN++T+ G+L+AC H+GLVDEG + F+ +
Sbjct: 387 SWNGMIAAYAHHGVGVEAIHLYEKMQEKGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYM 446
Query: 278 DEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDM 337
++ + R +HY C++DL +AG L +A +I +++EP+ +W + L C H +
Sbjct: 447 VKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGGCNSHGNESI 506
Query: 338 AERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ + L +P N+ G +TL+C++Y KW+ A ++R M ++ ++K G S I
Sbjct: 507 GDLAARNLLE-AEP-NNAGTYTLLCNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWI 562
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 128/265 (48%), Gaps = 46/265 (17%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
ARKLFD +PERN + W TM+ G ++SG+V EAR F+ MP RNV SW+AMI+ Y
Sbjct: 179 ARKLFDRMPERNVMAWTTMVAGIARSGSVDEARALFDGMPERNVVSWNAMISGYARNHRI 238
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
D LF +M + + + S +++ GFI +
Sbjct: 239 DEAHDLFMKMPTRD------------------IASWNIMI----TGFIQDRD-------- 268
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+ A +F+ M RNVI+WT ++ G SE AL +F M G++
Sbjct: 269 ------------LERAQDLFDKMPRRNVITWTTMMNGYLQSMQSETALQIFNGMLVEGIR 316
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMI-DEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
PN++TF G + AC + + EG++ +MI + + I+ +++L+ K G + A
Sbjct: 317 PNQVTFLGAVDACSNLAGLSEGQQVHQMICKTSFQFDTFIE--STLMNLYAKCGEIRLAR 374
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEH 332
+V + E +VI W +AA H
Sbjct: 375 KVF-DLSKEKDVISWNGMIAAYAHH 398
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 129/287 (44%), Gaps = 38/287 (13%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL-RNVASWSAMIAAYLNAGA 127
AR+LFD P+R+ V+W ++ Y++ G + +AR F+R RNV +W+A+++ Y AG
Sbjct: 54 ARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALFDRPDARRNVVTWTALLSGYARAGR 113
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
D LF+ M ++ + M +G V++ W L + +
Sbjct: 114 VDEAEALFQRMPERNVVSWNTMLEAYTSAG------------------RVRDAWTLFDGM 155
Query: 188 A-------TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
IL+ + G + A +F+ M ERNV++WT ++ G A G ++A +LF+
Sbjct: 156 PVRDAGSWNILLAALVRSGNMDKARKLFDRMPERNVMAWTTMVAGIARSGSVDEARALFD 215
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF-KMIDEEYDLEPRIQHYGCMVDLFGK 299
M + N +++ +++ +DE F KM + I + M+ F +
Sbjct: 216 GMP----ERNVVSWNAMISGYARNHRIDEAHDLFMKMPTRD------IASWNIMITGFIQ 265
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQAL 346
LE A ++ M NVI W + + + Q + A ++ L
Sbjct: 266 DRDLERAQDLFDKM-PRRNVITWTTMMNGYLQSMQSETALQIFNGML 311
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/302 (23%), Positives = 123/302 (40%), Gaps = 56/302 (18%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
N + + +G V +AR F+R P R+V SW+A++AAY G LF + +
Sbjct: 39 NRRVAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALFDRPDARRNV 98
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
+T A+LSG YA+ G + A
Sbjct: 99 ----VTWTALLSG-------------------------------------YARAGRVDEA 117
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
+F+ M ERNV+SW ++ G DA +LF+ M + ++ +L A V +
Sbjct: 118 EALFQRMPERNVVSWNTMLEAYTSAGRVRDAWTLFDGMPVR----DAGSWNILLAALVRS 173
Query: 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324
G +D+ RK F + E + + MV ++G ++EA + M E NV+ W +
Sbjct: 174 GNMDKARKLFDRMPER-----NVMAWTTMVAGIARSGSVDEARALFDGM-PERNVVSWNA 227
Query: 325 FLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384
++ + + D A L M P D + ++ + + E A+ + M +
Sbjct: 228 MISGYARNHRIDEA-----HDLFMKMPTRDIASWNIMITGFIQDRDLERAQDLFDKMPRR 282
Query: 385 NV 386
NV
Sbjct: 283 NV 284
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 109/250 (43%), Gaps = 34/250 (13%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+Q+F+ M + + + + L + +C++ L+ +H I K F ++ ++L++
Sbjct: 304 LQIFNGMLVEGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTSFQFDTFIESTLMNL 363
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR----NVASW 115
Y ARK+FD E++ ++WN MI Y+ G EA +E+M + N ++
Sbjct: 364 YAKCGEIRLARKVFDLSKEKDVISWNGMIAAYAHHGVGVEAIHLYEKMQEKGYKPNDVTY 423
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVG---------- 165
+++A ++G D GL++F M+ + + ++ CS G +G
Sbjct: 424 VGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLK 483
Query: 166 ----------LLMGKSAHG------FIVKNEWEL---NEQIATILVDMYAKCGFLKYALM 206
LL G ++HG +N E N T+L ++YA G K A
Sbjct: 484 VEPSSTVWNALLGGCNSHGNESIGDLAARNLLEAEPNNAGTYTLLCNIYASAGKWKEAAK 543
Query: 207 VFELMEERNV 216
+ M +R +
Sbjct: 544 IRSEMNDRGL 553
>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 208/340 (61%), Gaps = 6/340 (1%)
Query: 54 ATSLLHEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA 113
A S L Y V F +++P N + +I YSK G+V +A F+ + +N+
Sbjct: 237 ACSTLCNYEVGRFLSVFIDVNKIP-LNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLP 295
Query: 114 SWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH 173
SW+A+I + G + + L+R M + + + P+++T+ VLS C+ LG+ L +G+ H
Sbjct: 296 SWNAIITGCVQGGLLEEAIDLYRHMKA-QSVKPNEITLVNVLSACAGLGA--LELGREVH 352
Query: 174 GFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE 233
++ +N +LN +AT LVDMYAKCG + A ++F E++V W A+I G A+ G
Sbjct: 353 LYLGRNGLDLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGR 412
Query: 234 DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293
D+L++F M GV+PN++TF GVL+AC H+GLV+EGR F + +++ L P+++HY CM
Sbjct: 413 DSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACM 472
Query: 294 VDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353
VDL G+AG L+EAYE+++ M + P+ IIWG+ L+AC+ H+ ++A+++ + + P
Sbjct: 473 VDLLGRAGHLKEAYELVQNMLIPPDSIIWGALLSACRIHRNLELADKISETIMASQDP-- 530
Query: 354 DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
+ G L+ ++Y + +W+ RVR+ + + ++K G S
Sbjct: 531 NIGFCILLSNIYASSGRWKDVARVRRQVKEKRIKKPSGCS 570
Score = 194 bits (492), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 117/355 (32%), Positives = 192/355 (54%), Gaps = 7/355 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ +M R S +F+ +LK+C+ ++ +H+H+L+LGF S ++V SL+ Y
Sbjct: 80 LYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHTHVLRLGFGSDLFVCNSLIDMYC 139
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR-NVASWSAMIA 120
AR +D++ R+ V+WN++I GY + G V +ARD FE MP+R NV W+AMI
Sbjct: 140 KCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVEKARDLFEEMPMRRNVVCWTAMIN 199
Query: 121 AYLNAGAYDPGLKLFREM-ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y G + L LFR+M +S + + P+ T+ +LS CS L + + G+ FI N
Sbjct: 200 GYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLCNYEV--GRFLSVFIDVN 257
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ LN + T L+DMY+KCG ++ A +F+ + +N+ SW A+I G G E+A+ L+
Sbjct: 258 KIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLY 317
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M+A VKPNE+T VL+AC G ++ GR+ + L+ + +VD++ K
Sbjct: 318 RHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLYLGRN-GLDLNVILATALVDMYAK 376
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
G +++A +I E +V +W + + H + V Q +R ND
Sbjct: 377 CGKIDDAC-LIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPND 430
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/347 (23%), Positives = 140/347 (40%), Gaps = 76/347 (21%)
Query: 19 ILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPE 78
+L +L++ T +LT IH +H+ L G ++ L+ + S +AR + D+ P
Sbjct: 2 LLSLLRTAT---SLTQIHQIHAQTLIHGLPLQTHLIPKLIDLH---SIDYARFVLDQTPS 55
Query: 79 RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM 138
+WN++I+ Y+ G+ + + LK+ R
Sbjct: 56 PTDFSWNSLIRAYTVHGSPQNSLFLY---------------------------LKMLR-- 86
Query: 139 ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198
P T VL CS LGSV L G+ H +++ + + + L+DMY KC
Sbjct: 87 ---SSTKPSNFTFPFVLKACSTLGSV--LEGEQIHTHVLRLGFGSDLFVCNSLIDMYCKC 141
Query: 199 --------------------------GFLKY-----ALMVFELME-ERNVISWTALICGS 226
G++++ A +FE M RNV+ WTA+I G
Sbjct: 142 FRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVEKARDLFEEMPMRRNVVCWTAMINGY 201
Query: 227 AHRGYSEDALSLFEMM--QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLE 284
G + LSLF M A V+PN T +L+AC + GR ID +
Sbjct: 202 GKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLCNYEVGRFLSVFIDVN-KIP 260
Query: 285 PRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKE 331
++D++ K G +E+A+ + + + N+ W + + C +
Sbjct: 261 LNTILVTALIDMYSKCGDVEKAWRIFDGVSCK-NLPSWNAIITGCVQ 306
>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
Length = 729
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 138/413 (33%), Positives = 232/413 (56%), Gaps = 27/413 (6%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHH---LHSHILKLGFI-SHVYVATS 56
+ +F +M + V +S +I + +CT NL+++ H +H + +K+ + S + V S
Sbjct: 197 LNVFRKMVLEGVKPNSITIASAVSACT---NLSLLRHGREIHGYCIKVEELDSDLLVGNS 253
Query: 57 LLHEYV-VTSFGFARKLFDELPERNAVTWNTM--IKGYSKSGNVCEARDFFERMPL---- 109
L+ Y S AR+ F + + + V+WN M + G+++ G+ A +FF+RM +
Sbjct: 254 LVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSV 313
Query: 110 ------RNVASWSAMIAAYLNAGAYDPGLKLFREM-ISNEGLTPDQMTIGAVLSGCSHLG 162
R+V W+++I+A +G L L REM +SN + + +T+ + L CS L
Sbjct: 314 FSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSN--VEVNTVTMVSALPACSKLA 371
Query: 163 SVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTAL 222
+ L GK H FI++ + I L+DMY +CG ++ + +F+LM +R+++SW +
Sbjct: 372 A--LRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVM 429
Query: 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD 282
I G+ DA++LF+ + G+KPN +TFT +L+AC H+GL++EG KYFKM+ EY
Sbjct: 430 ISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYA 489
Query: 283 LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVI 342
++P ++ Y CMVDL +AG E E I M EPN +WGS L AC+ H D+AE
Sbjct: 490 MDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAA 549
Query: 343 KQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ + +P++ G + L+ ++Y+ +WE A ++R LM + V K G S I
Sbjct: 550 RYLFEL-EPQSSGN-YVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWI 600
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 126/241 (52%), Gaps = 4/241 (1%)
Query: 87 MIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
+++ Y ++G V +AR F++M RNV SW+A++ Y G Y+ +KLF M+ NEG+ P
Sbjct: 51 LLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMV-NEGVRP 109
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
D V CS L + + GK + +++ +E N + ++DM+ KCG + A
Sbjct: 110 DHFVFPKVFKACSELKNYRV--GKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARR 167
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
FE +E ++V W ++ G +G + AL++F M GVKPN +T ++AC + L
Sbjct: 168 FFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSL 227
Query: 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
+ GR+ + +L+ + +VD + K +E A ++ + +++ W + L
Sbjct: 228 LRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIK-QTDLVSWNAML 286
Query: 327 A 327
A
Sbjct: 287 A 287
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/407 (24%), Positives = 166/407 (40%), Gaps = 112/407 (27%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF M + V D F + K+C+ N V ++ ++L +GF + V S+L
Sbjct: 96 IKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDM 155
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
++ K G + AR FFE + ++V W+ M++
Sbjct: 156 FI------------------------------KCGRMDIARRFFEEIEFKDVFMWNIMVS 185
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y + G + L +FR+M+ EG+ P+ +TI + +S C++L L G+ HG+ +K E
Sbjct: 186 GYTSKGEFKKALNVFRKMVL-EGVKPNSITIASAVSACTNLSL--LRHGREIHGYCIKVE 242
Query: 181 WELNEQ--IATILVDMYAKC----------------------------GFLKY------- 203
EL+ + LVD YAKC GF +Y
Sbjct: 243 -ELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAAL 301
Query: 204 --------ALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT 255
A VF + R+V+ W ++I A G S +AL L M + V+ N +T
Sbjct: 302 EFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMV 361
Query: 256 GVLTACVHTGLVDEGRKYFKMI----------------------------DEEYDLEPR- 286
L AC + +G++ + I +DL P+
Sbjct: 362 SALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQR 421
Query: 287 -IQHYGCMVDLFGKAGFLEEA---YEVIRTMRLEPNVIIWGSFLAAC 329
+ + M+ ++G GF +A ++ RTM L+PN I + + L+AC
Sbjct: 422 DLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSAC 468
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 99/213 (46%), Gaps = 9/213 (4%)
Query: 145 TPDQMT--IGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLK 202
PD+ ++L C L L +G H +V N ++ E + + L+++Y + G ++
Sbjct: 5 NPDECIEIYASILQKCRKL--YNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVE 62
Query: 203 YALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACV 262
A +F+ M ERNV SWTA++ G E+ + LF +M GV+P+ F V AC
Sbjct: 63 DARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACS 122
Query: 263 HTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVII 321
G+ Y M+ ++ ++ G ++D+F K G ++ A + + +V +
Sbjct: 123 ELKNYRVGKDVYDYMLSIGFEGNSCVK--GSILDMFIKCGRMDIARRFFEEIEFK-DVFM 179
Query: 322 WGSFLAACKEHKQFDMAERVI-KQALRMVKPEN 353
W ++ +F A V K L VKP +
Sbjct: 180 WNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNS 212
>gi|326522488|dbj|BAK07706.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 799
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 138/394 (35%), Positives = 223/394 (56%), Gaps = 7/394 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L+SQM + +L +C +L +H+ LK+G ++V+V++SL+
Sbjct: 367 VKLYSQMLADGCRPNISCFSSVLSACATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDM 426
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A+ +FD LPE+N V WN++ GYS +G + EA F++MP RN+ASW+ +I
Sbjct: 427 YCKCKKCRDAQTIFDTLPEKNIVCWNSLASGYSYNGKMVEAMYLFKKMPARNLASWNTII 486
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y + L+ F M+++ G P ++T +VL C++L S L+ GK AH +K
Sbjct: 487 SGYAQNRQFVDALRSFNAMLAS-GQVPGEITFSSVLLACANLCS--LVTGKMAHAKTIKL 543
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
E + I T L DMYAK G L+ + +F M ERN ++WTA+I G A G +E+++ LF
Sbjct: 544 GMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERNDVTWTAMIQGLAENGLAEESILLF 603
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
E M ATG+ PNE TF +L AC H GLV++ YF+ + + + + P+ +HY CMVD+ +
Sbjct: 604 EDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFEKM-QAWGISPKEKHYTCMVDVLAR 662
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG L EA ++ + W + L+AC +K ++ ER K+ L + +N G +
Sbjct: 663 AGRLIEAEALLMKTPSKSEANSWAALLSACNTYKNEEIGERAAKR-LHELGKDNTAG-YV 720
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
L+ ++Y +W+ A R+R LM ++K G S
Sbjct: 721 LLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCS 754
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 100/415 (24%), Positives = 179/415 (43%), Gaps = 44/415 (10%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L + R V +D+ H+L + F + G S + ++HE
Sbjct: 103 LSLHAHAVRSGVAADTSVASHLLTTYAAFARAAECDRAFGDCVAAGAASP-FTYDFMVHE 161
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
+V AR LFD +PER+ V++ TM+ K G V EA + +E+ P +VA ++A I
Sbjct: 162 HVKAGDIASARGLFDGMPERSVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATI 221
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL------------ 167
+ ++ + L +FR+M+S G+ P+ +T ++ C G GL
Sbjct: 222 SGFVRNELHHNALGVFRKMVSC-GVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIKSNF 280
Query: 168 -----------------MGKSAHGFIVKNEWELNEQIA-TILVDMYAKCGFLKYALMVFE 209
MG +A V +E ++ + ++ T L+D+Y++ G L A V +
Sbjct: 281 FESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLD 340
Query: 210 LMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
M ERN +SW LI RG + +A+ L+ M A G +PN F+ VL+AC +++
Sbjct: 341 AMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSAC---ATLED 397
Query: 270 GRKYFKMIDEEYDLEPRIQHY--GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
R ++ + + ++D++ K +A + T+ E N++ W S +
Sbjct: 398 LRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLP-EKNIVCWNSLAS 456
Query: 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382
+ + A + K+ P + + I Y N ++ A R ML
Sbjct: 457 GYSYNGKMVEAMYLFKK-----MPARNLASWNTIISGYAQNRQFVDALRSFNAML 506
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 81/200 (40%), Gaps = 43/200 (21%)
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
T +VD K G + A+ ++E +V +TA I G +AL +F M + GV+
Sbjct: 187 TTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATISGFVRNELHHNALGVFRKMVSCGVR 246
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG---KAGFLEE 305
PN +TF ++ ACV G +G + + G K+ F E
Sbjct: 247 PNGITFVCMIKACVGAG-----------------------EFGLAMSIVGSAIKSNFFES 283
Query: 306 AYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365
+ EV ++ + ++ A K FD E +K + +T + D+Y
Sbjct: 284 SIEVQNSL-----ITLYLRMGDAAAARKVFD--EMDVKDVVS----------WTALLDVY 326
Query: 366 TMNEKWEGAERVRKLMLNQN 385
+ + +GA RV M +N
Sbjct: 327 SESGDLDGARRVLDAMPERN 346
>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
Length = 980
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 130/393 (33%), Positives = 216/393 (54%), Gaps = 38/393 (9%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV- 62
F + ++ + DS + IL C + L + + S I++ GF S +++ +L+ +V
Sbjct: 496 FQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVN 555
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
A LF+++PER+ V+WNT+I G+ + G A D+F
Sbjct: 556 CGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYF------------------ 597
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+M+ G+ PDQ+T +L+ C+ L G+ H I + +
Sbjct: 598 --------------KMMQESGVKPDQITFTGLLNACA--SPEALTEGRRLHALITEAALD 641
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
+ + T L+ MY KCG + A +VF + ++NV SWT++I G A G ++AL LF M
Sbjct: 642 CDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQM 701
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
Q GVKP+ +TF G L+AC H GL+ EG +F+ + +++++EPR++HYGCMVDLFG+AG
Sbjct: 702 QQEGVKPDWITFVGALSACAHAGLIKEGLHHFESM-KDFNIEPRMEHYGCMVDLFGRAGL 760
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362
L EA E I M+++P+ +WG+ L AC+ H ++AE+V ++ L + ND GV+ ++
Sbjct: 761 LHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLEL--DPNDDGVYVILS 818
Query: 363 DLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y W+ ++RK+ML++ V K G S I
Sbjct: 819 NIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWI 851
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 99/351 (28%), Positives = 171/351 (48%), Gaps = 36/351 (10%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
F++M + + + + IL +C+ + L +H I+K G+I+ V T+LL
Sbjct: 394 FFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALL---- 449
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
Y+K G++ +AR+ FER+ +NV +W+AMI AY
Sbjct: 450 --------------------------SMYAKCGSLMDARNVFERISKQNVVAWNAMITAY 483
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+ YD + F+ ++ EG+ PD T ++L+ C L +GK I++ +E
Sbjct: 484 VQHEKYDNAVATFQALLK-EGIKPDSSTFTSILNVCK--SPDALELGKWVQSLIIRAGFE 540
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
+ I LV M+ CG L A+ +F M ER+++SW +I G G ++ A F+MM
Sbjct: 541 SDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMM 600
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
Q +GVKP+++TFTG+L AC + EGR+ +I E L+ + ++ ++ K G
Sbjct: 601 QESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAA-LDCDVVVGTGLISMYTKCGS 659
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA-ERVIKQALRMVKPE 352
+++A+ V + + NV W S + +H + A E + VKP+
Sbjct: 660 IDDAHLVFHNLP-KKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPD 709
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 102/383 (26%), Positives = 185/383 (48%), Gaps = 40/383 (10%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+L QM + V D ++ +++L +C N+ L S IL G+ + ++V T+L++ +
Sbjct: 191 RLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMH 250
Query: 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+ K G V +A F +P R++ +W++MI
Sbjct: 251 I------------------------------KCGGVDDALKVFNNLPRRDLITWTSMITG 280
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
+ LF+ M EG+ PD++ ++L C+H L GK H + +
Sbjct: 281 LARHRQFKQACNLFQVM-EEEGVQPDKVAFVSLLKACNH--PEALEQGKRVHARMKEVGL 337
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ + T L+ MY KCG ++ AL VF L++ RNV+SWTA+I G A G E+A F
Sbjct: 338 DTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNK 397
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M +G++PN +TF +L AC + +GR+ + ++I Y + R++ ++ ++ K
Sbjct: 398 MIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVR--TALLSMYAKC 455
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-VKPENDGGVFT 359
G L +A V + + NV+ W + + A +H+++D A + L+ +KP D FT
Sbjct: 456 GSLMDARNVFERIS-KQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKP--DSSTFT 512
Query: 360 LICDLYTMNEKWEGAERVRKLML 382
I ++ + E + V+ L++
Sbjct: 513 SILNVCKSPDALELGKWVQSLII 535
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 140/255 (54%), Gaps = 5/255 (1%)
Query: 84 WNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEG 143
WN +I Y+K GN A+ F+ MP ++V SW+ ++ Y+ Y+ +L +M+ +G
Sbjct: 142 WNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMV-QDG 200
Query: 144 LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKY 203
+ PD+ T +L+ C+ +V G I+ W+ + + T L++M+ KCG +
Sbjct: 201 VKPDKYTFVYMLNACADAKNVD--KGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDD 258
Query: 204 ALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263
AL VF + R++I+WT++I G A + A +LF++M+ GV+P+++ F +L AC H
Sbjct: 259 ALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNH 318
Query: 264 TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWG 323
+++G++ + +E L+ I ++ ++ K G +E+A EV ++ NV+ W
Sbjct: 319 PEALEQGKRVHARM-KEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGR-NVVSWT 376
Query: 324 SFLAACKEHKQFDMA 338
+ +A +H + + A
Sbjct: 377 AMIAGFAQHGRMEEA 391
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 87/171 (50%), Gaps = 4/171 (2%)
Query: 169 GKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAH 228
G+ H I ++ + + + +L+ MYAKCG A +F+ M +++V SW L+ G
Sbjct: 123 GERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQ 182
Query: 229 RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI-DEEYDLEPRI 287
E+A L E M GVKP++ TF +L AC VD+G + F +I + +D + +
Sbjct: 183 HRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFV 242
Query: 288 QHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
++++ K G +++A +V + ++I W S + H+QF A
Sbjct: 243 G--TALINMHIKCGGVDDALKVFNNLP-RRDLITWTSMITGLARHRQFKQA 290
>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 129/329 (39%), Positives = 194/329 (58%), Gaps = 12/329 (3%)
Query: 74 DELPERNAVTWN-----TMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
+E N +T N +I Y K G++ AR F+ M ++ +W+AMI Y G
Sbjct: 251 EEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMS 310
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ +KLF++M PDQ+T+ +LS C+ +G++ L GK + + ++ + +
Sbjct: 311 EEAIKLFQDM-RMSSTAPDQITLIGILSACASIGALDL--GKQVEIYASERGFQDDVYVG 367
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG-- 246
T LVDMYAKCG L A VF M +N +SW A+I A G +++AL+LF+ M G
Sbjct: 368 TALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGT 427
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
V PN++TF GVL+ACVH GLVDEGR+ F M+ + L P+I+HY CMVDLF +AG LEEA
Sbjct: 428 VSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEA 487
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366
++ + TM +P+ +I G+ L AC++ K D++ERV+K L + +P N G + + LY
Sbjct: 488 WDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLEL-EPSNSGN-YVISSKLYA 545
Query: 367 MNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+W+ + R+R LM + V K G S I
Sbjct: 546 NLRRWDDSARMRMLMKQKGVSKTPGCSWI 574
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 97/360 (26%), Positives = 177/360 (49%), Gaps = 43/360 (11%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++ +S+M + ++ + + +C++ + H +++ G +V+ SL+
Sbjct: 112 LEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITM 171
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y G ARK+FDE+ +++ V+WN+MI GYSK + EA
Sbjct: 172 YARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEA------------------- 212
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ LFREM+ G P++M++ +VL C LG + L G F+V+N
Sbjct: 213 ------------VGLFREMME-AGFQPNEMSLVSVLGACGELGDLKL--GTWVEEFVVEN 257
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ LN + + L+ MY KCG L A +F+ M++++ ++W A+I G A G SE+A+ LF
Sbjct: 258 KMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLF 317
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+ M+ + P+++T G+L+AC G +D G++ ++ E + + +VD++ K
Sbjct: 318 QDMRMSSTAPDQITLIGILSACASIGALDLGKQ-VEIYASERGFQDDVYVGTALVDMYAK 376
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
G L+ A+ V M N + W + ++A H Q A + K + N+GG +
Sbjct: 377 CGSLDNAFRVFYGMP-NKNEVSWNAMISALAFHGQAQEALALFKSMM------NEGGTVS 429
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/355 (23%), Positives = 160/355 (45%), Gaps = 61/355 (17%)
Query: 8 HRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSF 66
+RQ++ SD F+ L L+ C L IH + +L + ++ S L++ + F
Sbjct: 27 NRQAL-SDKFNSL--LQQCLSIKQLKQIH---AQLL----TNSIHKPNSFLYKIADLKDF 76
Query: 67 GFARKLFDELPERNAVTWNTMIKGYSKSGNVCE-ARDFFERMPLRNVASWSAMIAAYLNA 125
+A F + + ++N MI+G S + N A +F+ RM
Sbjct: 77 AYASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFL--------------- 121
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
GL P+ +T + CS+L +V G+ H +++ + +
Sbjct: 122 -----------------GLKPNNLTYPFLFIACSNLLAVE--NGRMGHCSVIRRGLDEDG 162
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
++ L+ MYA+CG + A VF+ + +++++SW ++I G + ++ +A+ LF M
Sbjct: 163 HVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEA 222
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQ-HY---GCMVDLFGKAG 301
G +PNEM+ VL AC G + G EE+ +E ++ +Y ++ ++GK G
Sbjct: 223 GFQPNEMSLVSVLGACGELGDLKLGTWV-----EEFVVENKMTLNYFMGSALIHMYGKCG 277
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIK--QALRMVKPEND 354
L A + +M+ + + + W + + + Q M+E IK Q +RM D
Sbjct: 278 DLVSARRIFDSMK-KKDKVTWNAMITG---YAQNGMSEEAIKLFQDMRMSSTAPD 328
>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 760
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 130/398 (32%), Positives = 225/398 (56%), Gaps = 10/398 (2%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+F ++H D ++ +L S L + +H +++K G + V ++++ Y
Sbjct: 239 MFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYG 298
Query: 63 VTSFGFAR-KLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR----NVASWSA 117
+ + LF++ A N I G S++G V +A + FE + NV SW++
Sbjct: 299 KSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTS 358
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
+IA G L+LFREM G+ P+ +TI ++L C ++ ++G G+S HGF V
Sbjct: 359 IIAGCAQNGKDIEALELFREM-QVAGVKPNHVTIPSMLPACGNIAALG--HGRSTHGFAV 415
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
+ N + + L+DMYAKCG + + +VF +M +N++ W +L+ G + G +++ +S
Sbjct: 416 RVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMS 475
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
+FE + T +KP+ ++FT +L+AC GL DEG KYFKM+ EEY ++PR++HY CMV+L
Sbjct: 476 IFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLL 535
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
G+AG L+EAY++I+ M EP+ +WG+ L +C+ D+AE + + L ++PEN G
Sbjct: 536 GRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAE-IAAEKLFHLEPENP-GT 593
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ ++Y W + +R M + ++K G S I
Sbjct: 594 YVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWI 631
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 95/391 (24%), Positives = 176/391 (45%), Gaps = 46/391 (11%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+FS+M + DS + ++ K C + V +H G +V S+ H Y+
Sbjct: 103 VFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYM 162
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR----NVASWSA 117
G ARK+FD + +++ VT + ++ Y++ G + E M N+ SW+
Sbjct: 163 RCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNG 222
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
+++ + +G + + +F++ I + G PDQ+T+ +VL S L MG+ HG+++
Sbjct: 223 ILSGFNRSGYHKEAVVMFQK-IHHLGFCPDQVTVSSVLPSVGD--SEMLNMGRLIHGYVI 279
Query: 178 KNEWELNEQIATILVDMYAKC-------------------------------GFLKYALM 206
K ++ + + ++DMY K G + AL
Sbjct: 280 KQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALE 339
Query: 207 VFELMEER----NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACV 262
+FEL +E+ NV+SWT++I G A G +AL LF MQ GVKPN +T +L AC
Sbjct: 340 MFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACG 399
Query: 263 HTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
+ + GR + L+ + ++D++ K G + + +++ M N++ W
Sbjct: 400 NIAALGHGRSTHGFAVRVHLLD-NVHVGSALIDMYAKCGRINLS-QIVFNMMPTKNLVCW 457
Query: 323 GSFLAACKEHKQFDMAERVIKQALRM-VKPE 352
S + H + + + +R +KP+
Sbjct: 458 NSLMNGFSMHGKAKEVMSIFESLMRTRLKPD 488
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/336 (20%), Positives = 136/336 (40%), Gaps = 72/336 (21%)
Query: 87 MIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
+I YS +A + +P + S+S++I A A + + +F M S+ GL P
Sbjct: 56 LIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSH-GLIP 114
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
D + + C+ L + +GK H + +++ + + MY +CG + A
Sbjct: 115 DSHVLPNLFKVCAELSA--FKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARK 172
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
VF+ M +++V++ +AL+C A +G E+ + + M+++G++ N +++ G+L+ +G
Sbjct: 173 VFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGY 232
Query: 267 VDEGRKYFKMI--------------------DEEYDLEPRIQH--------------YGC 292
E F+ I D E R+ H
Sbjct: 233 HKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISA 292
Query: 293 MVDLFGKAGFLE----------------------------------EAYEVIRTMRLEPN 318
M+D++GK+G + E +E+ + +E N
Sbjct: 293 MIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELN 352
Query: 319 VIIWGSFLAACKEH-KQFDMAERVIKQALRMVKPEN 353
V+ W S +A C ++ K + E + + VKP +
Sbjct: 353 VVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNH 388
>gi|15242278|ref|NP_197038.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180838|sp|Q9LXE8.1|PP386_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g15340, mitochondrial; Flags: Precursor
gi|7671503|emb|CAB89344.1| putative protein [Arabidopsis thaliana]
gi|332004768|gb|AED92151.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 623
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 134/403 (33%), Positives = 224/403 (55%), Gaps = 14/403 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
M+LF +M R+ V D S++ + C +L H +K+G ++ V V +L+
Sbjct: 96 MKLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQQGHGVAVKMGVLTSVKVCNALMDM 155
Query: 61 YVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y +++F+EL E++ V+W ++ K + R+ F MP RN +W+ M+
Sbjct: 156 YGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMV 215
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A YL AG L+L EM+ G + +T+ ++LS C+ G+ L++G+ H + +K
Sbjct: 216 AGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGN--LVVGRWVHVYALKK 273
Query: 180 EWELNEQ-------IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
E + E+ + T LVDMYAKCG + ++ VF LM +RNV++W AL G A G
Sbjct: 274 EMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLMRKRNVVTWNALFSGLAMHGKG 333
Query: 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC 292
+ +F M VKP+++TFT VL+AC H+G+VDEG + F + Y LEP++ HY C
Sbjct: 334 RMVIDMFPQM-IREVKPDDLTFTAVLSACSHSGIVDEGWRCFHSL-RFYGLEPKVDHYAC 391
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE 352
MVDL G+AG +EEA ++R M + PN ++ GS L +C H + ++AER+ ++ ++M
Sbjct: 392 MVDLLGRAGLIEEAEILMREMPVPPNEVVLGSLLGSCSVHGKVEIAERIKRELIQMSPGN 451
Query: 353 NDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ + L+ ++Y + + A+ +R + + +RK G S I
Sbjct: 452 TEYQI--LMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGLSSI 492
>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
Length = 703
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 130/378 (34%), Positives = 213/378 (56%), Gaps = 37/378 (9%)
Query: 50 HVYVATSLLHEYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP 108
+V TS++ Y + + ARKLF+ +P++N VTW M+KGY++SG + EA + F+ MP
Sbjct: 201 NVVAWTSMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKGYTRSGRINEAAELFKAMP 260
Query: 109 LRNVA-------------------------------SWSAMIAAYLNAGAYDPGLKLFRE 137
++ VA +WSA+I Y G L LF
Sbjct: 261 VKPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALF-S 319
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
++ EG+ P+ +I ++LS C L S L G+ H +V++ ++L+ ++++L+ MY K
Sbjct: 320 LMQREGVRPNFPSIISILSVCGSLAS--LDHGRQVHSQLVRSHFDLDIYVSSVLITMYIK 377
Query: 198 CGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGV 257
CG L VF+ ++++ W ++I G A G+ E AL +F M ++G P+E+TF GV
Sbjct: 378 CGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGV 437
Query: 258 LTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEP 317
L+AC +TG V EG + F+ + +Y ++ + +HY CMVDL G+AG L EA +I M +E
Sbjct: 438 LSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEA 497
Query: 318 NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERV 377
+ I+WG+ L+AC+ HK D+AE K+ L++ +P + G + L+ +LY +W+ +
Sbjct: 498 DAIVWGALLSACRTHKNLDLAEIAAKKLLQL-EPSS-AGPYILLSNLYASQSRWKDVAEL 555
Query: 378 RKLMLNQNVRKARGSSVI 395
RK M +NV K+ G S I
Sbjct: 556 RKTMRARNVSKSPGCSWI 573
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 139/271 (51%), Gaps = 26/271 (9%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A+KLFD++PERN ++WN ++ GY K+G + EAR F++MP RNV SW++M+ Y+ G
Sbjct: 66 AQKLFDKMPERNTISWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLI 125
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLM-GKSAHGFIVKNEWELNEQI 187
D LF M P++ V+S LG GL+ G+ + + + + +
Sbjct: 126 DEAELLFWRM-------PEK----NVVSWTVMLG--GLIEDGRVDEARRLFDMIPVKDVV 172
Query: 188 A-TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
A T ++ G L A +F+ M +RNV++WT++I G A + A LFE+M
Sbjct: 173 ASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMP--- 229
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
NE+T+T +L +G ++E + FK + ++P G M+ FG G + +A
Sbjct: 230 -DKNEVTWTAMLKGYTRSGRINEAAELFKAM----PVKPVAACNG-MIMGFGLNGEVGKA 283
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDM 337
V M+ E + W S L E K F++
Sbjct: 284 RWVFDQMK-EKDDGTW-SALIKIYERKGFEL 312
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 130/304 (42%), Gaps = 57/304 (18%)
Query: 88 IKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD 147
I +++ G + AR+ F+ + + V SW+A++A Y + KLF +M P+
Sbjct: 23 ISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKM-------PE 75
Query: 148 QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMV 207
+ TI S +G LV Y K G + A V
Sbjct: 76 RNTI-------------------SWNG----------------LVSGYVKNGMISEARKV 100
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
F+ M ERNV+SWT+++ G G ++A LF M + N +++T +L + G V
Sbjct: 101 FDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMP----EKNVVSWTVMLGGLIEDGRV 156
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
DE R+ F MI + D+ G + G L EA E+ M + NV+ W S ++
Sbjct: 157 DEARRLFDMIPVK-DVVASTNMIGGLC----SEGRLSEAREIFDEMP-QRNVVAWTSMIS 210
Query: 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVR 387
+ + D+A ++ + V P+ + +T + YT + + A + K M + V
Sbjct: 211 GYAMNNKVDVARKLFE-----VMPDKNEVTWTAMLKGYTRSGRINEAAELFKAMPVKPVA 265
Query: 388 KARG 391
G
Sbjct: 266 ACNG 269
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 109/229 (47%), Gaps = 43/229 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LFS M R+ V + SI+ IL C +L +HS +++ F +YV++ L+
Sbjct: 315 LALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITM 374
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y+ +++FD ++ V WN++I GY++ G F E+
Sbjct: 375 YIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHG-------FGEK------------- 414
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV--GLLMGKSAHGFIV 177
L++F EM S+ G PD++T VLS C + G V GL + +S +
Sbjct: 415 -----------ALEVFHEMFSS-GAAPDEITFIGVLSACGYTGKVKEGLEIFES-----M 457
Query: 178 KNEWELNEQIA--TILVDMYAKCGFLKYALMVFELME-ERNVISWTALI 223
K++++++++ +VD+ + G L A+ + E M E + I W AL+
Sbjct: 458 KSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALL 506
>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
[Oryza sativa Japonica Group]
gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
[Oryza sativa Japonica Group]
Length = 808
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 130/400 (32%), Positives = 219/400 (54%), Gaps = 12/400 (3%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+LF +M + VP D F+ +L +C + +H I++L + V A ++
Sbjct: 286 ELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQ-PNFVPEAALPVNNA 344
Query: 62 VVTSFG------FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASW 115
+VT + A+++FD + ++ V+WNT++ GY SG + +A + F+ MP +N SW
Sbjct: 345 LVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSW 404
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
M++ Y++ G + LKLF +M + E + P T ++ C LG+ L G+ H
Sbjct: 405 MVMVSGYVHGGLSEDALKLFNQMRA-EDVKPCDYTYAGAIAACGELGA--LKHGRQLHAH 461
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
+V+ +E + L+ MYAKCG + A +VF +M + +SW A+I G+ +A
Sbjct: 462 LVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREA 521
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
L LF+ M A G+ P+ ++F +LTAC H GLVDEG YF+ + ++ + P HY ++D
Sbjct: 522 LELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLID 581
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
L G++G + EA ++I+TM EP IW + L+ C+ + + Q RM+ P++D
Sbjct: 582 LLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMI-PQHD- 639
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G + L+ + Y+ +W A RVRKLM ++ V+K G S I
Sbjct: 640 GTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWI 679
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 104/365 (28%), Positives = 173/365 (47%), Gaps = 50/365 (13%)
Query: 11 SVPSDSFSILHILKSCTHFNNLTVIH--HLHSHILKLGFISHVYVATSLLHEYVVTSFG- 67
S+ D +S ++ + +NL H LH +LK G + + V+ +L+ Y+
Sbjct: 158 SLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPE 217
Query: 68 ---FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLN 124
ARK+ DE+P+++ +TW TM+ GY + G+V AR FE + + W+AMI+ Y+
Sbjct: 218 ASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQ 277
Query: 125 AGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN 184
+G +LFR M+S E + D+ T +VLS C++ G + GKS HG I++ +
Sbjct: 278 SGMCADAFELFRRMVS-EKVPLDEFTFTSVLSACANAGF--FVHGKSVHGQIIRLQPNFV 334
Query: 185 EQIA----TILVDMYAK-------------------------------CGFLKYALMVFE 209
+ A LV +Y+K G L A+ VF+
Sbjct: 335 PEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFK 394
Query: 210 LMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
+M +N +SW ++ G H G SEDAL LF M+A VKP + T+ G + AC G +
Sbjct: 395 VMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKH 454
Query: 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNV--IIWGSFLA 327
GR+ + + E ++ ++ K G + +A V M PN+ + W + ++
Sbjct: 455 GRQLHAHL-VQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVM---PNLDSVSWNAMIS 510
Query: 328 ACKEH 332
A +H
Sbjct: 511 ALGQH 515
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 5/153 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF+QM + V ++ + +C L LH+H+++ GF + +LL
Sbjct: 421 LKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTM 480
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNV----ASW 115
Y + AR +F +P ++V+WN MI + G+ EA + F++M + S+
Sbjct: 481 YAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISF 540
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ 148
++ A +AG D G F M + G++P +
Sbjct: 541 LTILTACNHAGLVDEGFHYFESMKRDFGISPGE 573
>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa]
gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 191/327 (58%), Gaps = 4/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A+ LFD +P R+ V+W MI GY+K+G V AR F+ MP R+V +++AM+ Y+ G
Sbjct: 277 AQGLFDRMPNRDIVSWANMIDGYAKNGRVDIARSLFDEMPERDVVAYNAMMGGYVQNGYC 336
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L +F M S+ D T+ LS + LG + G + H FI + + L+ ++
Sbjct: 337 MEALGIFYGMQSDGNFLLDNATLLIALSAIAQLGHID--KGVAIHRFIEEIGFSLDGRLG 394
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+DMY+KCG ++ A+MVFE ++E++V W A+I G A G E A M+ V+
Sbjct: 395 VALIDMYSKCGSIENAMMVFENIKEKSVDHWNAIIGGLAIHGLGELAFDFLMEMERMRVE 454
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+++TF G+L AC H GLV EG F+++ + +EP++QHYGCMVD+ G+AG +EEA
Sbjct: 455 PDDITFIGLLNACGHAGLVKEGMMCFELMRRVHKVEPKLQHYGCMVDILGRAGHIEEAKN 514
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+ M EPN +IW S L+ACK H+ F++ + V + +R+ P + L ++Y
Sbjct: 515 FVEEMPFEPNDVIWRSLLSACKTHESFNVGQPVAENLMRLDSPSPSS--YVLASNMYAGL 572
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
KW +VR +M +N++K G S I
Sbjct: 573 GKWNDVRKVRAMMKQKNLKKIPGCSWI 599
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 101/364 (27%), Positives = 182/364 (50%), Gaps = 29/364 (7%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
M L S M +D F++ +LK+C+ + +H + KL F S +++ L+
Sbjct: 112 MWLVSLMLENGAFADKFTLSLVLKACSRVGLVKEGMQIHGLLKKLEFGSDLFLQNCLISF 171
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL--RNVASWSA 117
YV A ++FD +P+R++V++N+MI GY K G + AR F+ +PL RN+ SW++
Sbjct: 172 YVKCGCLVRASQVFDRMPKRDSVSYNSMIDGYVKGGRIDLARVVFDCIPLEERNLISWNS 231
Query: 118 MIAAYLNAGAYDPGL---KLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
+I Y A + D L +LF +M D ++ +++ GC G + + A G
Sbjct: 232 LIRGY--AQSEDGILVAWQLFAKMPER-----DLISWNSMIDGCVKCGRM-----EDAQG 279
Query: 175 FIVKNEWELNEQIATI--LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
+ N I + ++D YAK G + A +F+ M ER+V+++ A++ G GY
Sbjct: 280 LFDRMP---NRDIVSWANMIDGYAKNGRVDIARSLFDEMPERDVVAYNAMMGGYVQNGYC 336
Query: 233 EDALSLFEMMQATG-VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE-EYDLEPRIQHY 290
+AL +F MQ+ G + T L+A G +D+G + I+E + L+ R+
Sbjct: 337 MEALGIFYGMQSDGNFLLDNATLLIALSAIAQLGHIDKGVAIHRFIEEIGFSLDGRLGV- 395
Query: 291 GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-V 349
++D++ K G +E A V ++ E +V W + + H ++A + + RM V
Sbjct: 396 -ALIDMYSKCGSIENAMMVFENIK-EKSVDHWNAIIGGLAIHGLGELAFDFLMEMERMRV 453
Query: 350 KPEN 353
+P++
Sbjct: 454 EPDD 457
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 84/385 (21%), Positives = 159/385 (41%), Gaps = 72/385 (18%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L S Q + + L +LK C L+ I+ +H+ +L GFI + ++ T ++ +
Sbjct: 2 LLSGNLNQQPWNSAIPTLVLLKKCKR---LSDINQIHARLLTTGFIKNTFLTTKIILSFS 58
Query: 63 VTSFG----FARKLF-----------DELPERNAVTWNTMIKGYSKSGNVCEARDFFERM 107
+ FAR +F +E E++ WN +IK YS + EA
Sbjct: 59 TSLHAPLIEFARFIFFRHHAFEFDEKEEEEEKDPFLWNAIIKTYSHGHDPKEAM------ 112
Query: 108 PLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL 167
W +++ L GA+ D+ T+ VL CS +G V
Sbjct: 113 -------W--LVSLMLENGAF-----------------ADKFTLSLVLKACSRVGLVK-- 144
Query: 168 MGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSA 227
G HG + K E+ + + L+ Y KCG L A VF+ M +R+ +S+ ++I G
Sbjct: 145 EGMQIHGLLKKLEFGSDLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSMIDGYV 204
Query: 228 HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT--GLVDEGRKYFKMIDEEYDLEP 285
G + A +F+ + + N +++ ++ + G++ + + KM + +
Sbjct: 205 KGGRIDLARVVFDCIPLE--ERNLISWNSLIRGYAQSEDGILVAWQLFAKMPERD----- 257
Query: 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPN--VIIWGSFLAACKEHKQFDMAERVIK 343
+ + M+D K G +E+A + M PN ++ W + + ++ + D+A +
Sbjct: 258 -LISWNSMIDGCVKCGRMEDAQGLFDRM---PNRDIVSWANMIDGYAKNGRVDIARSLFD 313
Query: 344 QALRMVKPENDGGVFTLICDLYTMN 368
+ PE D + + Y N
Sbjct: 314 EM-----PERDVVAYNAMMGGYVQN 333
>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 558
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 136/397 (34%), Positives = 215/397 (54%), Gaps = 39/397 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ F M +P D+F+ +LK+C+ L + HLHS I+K G S ++V +L+
Sbjct: 72 LSYFFSMRSNGIPLDNFTFPFVLKACSR---LQINLHLHSLIVKYGLGSDIFVQNALICV 128
Query: 61 Y-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y S A K+FDE+ E R+ SWS +I
Sbjct: 129 YGYCGSLEMAVKVFDEMSE-------------------------------RDSVSWSTVI 157
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A++LN G L LF +M + + PD++T+ +V+S SHLG L +G+ FI +
Sbjct: 158 ASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGD--LELGRWVRAFIGRL 215
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ ++ + T L+DM+++CG + +++VFE M RNV++WTALI G G S +AL++F
Sbjct: 216 GFGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGIHGRSMEALAMF 275
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M+ +GV+P+ +TF+GVL AC H GLV EG F+ I + Y ++P + HYGCMVD+ G+
Sbjct: 276 HSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVYGMDPLLDHYGCMVDILGR 335
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG L EAY+ + M ++PN IIW + L AC H +AE+V + ++ +N G
Sbjct: 336 AGLLNEAYDFVERMPMKPNSIIWRTLLGACVNHNNLGLAEKVKAKISKISSSQN--GDLV 393
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
L+ ++Y +W +R M + + K G S I+
Sbjct: 394 LLSNVYGAAGRWVEKASIRSKMREKRIGKEPGCSSIN 430
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 8/158 (5%)
Query: 173 HGFIVKNEWELNE-QIATILVDMYAKCG-FLKYALMVFELMEERNVISWTALICGSAHRG 230
H +I+K+ + + + T+L+ A L YA VF + + I++ +I S R
Sbjct: 8 HCYIIKSSKQNDPLSLRTLLLSCVAAAPESLSYARYVFSRIPSPDTIAYNTII-RSHSRF 66
Query: 231 YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHY 290
+ +LS F M++ G+ + TF VL AC + + + +Y L I
Sbjct: 67 FPSHSLSYFFSMRSNGIPLDNFTFPFVLKACSRLQI----NLHLHSLIVKYGLGSDIFVQ 122
Query: 291 GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
++ ++G G LE A +V M E + + W + +A+
Sbjct: 123 NALICVYGYCGSLEMAVKVFDEMS-ERDSVSWSTVIAS 159
>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Cucumis sativus]
gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Cucumis sativus]
Length = 606
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 130/393 (33%), Positives = 215/393 (54%), Gaps = 34/393 (8%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L++ M ++ V D+F+ +LK+C + +H H+ KLG VYV
Sbjct: 119 LYNDMLQREVEPDNFTYPVVLKACARLAVIQEGMQIHGHVFKLGLEDDVYVQ-------- 170
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
N++I Y K ++ + F RM ++VASWSA+IAA+
Sbjct: 171 ----------------------NSLINMYGKCRDIEMSCAIFRRMEQKSVASWSAIIAAH 208
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+ + L LF +M ++ + VLS C+HLG+ L G+ AHG ++KN E
Sbjct: 209 ASLAMWWECLALFEDMSREGCWRAEESILVNVLSACTHLGAFHL--GRCAHGSLLKNITE 266
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
LN + T L+DMY KCG L+ L +F+ M +N +S++ +I G GY AL +F M
Sbjct: 267 LNVAVMTSLMDMYVKCGSLQKGLCLFQNMTRKNQLSYSVIISGLGLHGYGRQALQIFSEM 326
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
G++P+++T+ VL+AC H+GLVDEG F + EY +EP +QHYGCMVDL G+AG
Sbjct: 327 VEEGLEPDDVTYVSVLSACSHSGLVDEGLDLFDKMKFEYRIEPTMQHYGCMVDLKGRAGL 386
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362
LEEA++++++M ++ N ++W S L+ACK H + E + R+ ++ + ++
Sbjct: 387 LEEAFQLVQSMPIKANDVLWRSLLSACKVHDNLKLGEIAAENLFRL--SSHNPSDYLVLS 444
Query: 363 DLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y ++WE A ++R M+N+ + + G S++
Sbjct: 445 NMYARAQQWENAAKIRTKMINRGLIQTPGYSLV 477
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/313 (24%), Positives = 136/313 (43%), Gaps = 48/313 (15%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT---SFGFARKLFDEL 76
L ++K C +L +H ILK G + ++S+L ++ S +A +F +L
Sbjct: 36 LCLVKKC---KSLEEFKQVHVQILKFGLFLDSFCSSSVLATCALSDWNSMDYACSIFQQL 92
Query: 77 PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFR 136
E +NTMI+GY + N ++ + L+
Sbjct: 93 DEPTTFDFNTMIRGYVNNMN-------------------------------FENAIYLYN 121
Query: 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA 196
+M+ E + PD T VL C+ L + G HG + K E + + L++MY
Sbjct: 122 DMLQRE-VEPDNFTYPVVLKACARLAVIQ--EGMQIHGHVFKLGLEDDVYVQNSLINMYG 178
Query: 197 KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV-KPNEMTFT 255
KC ++ + +F ME+++V SW+A+I A + L+LFE M G + E
Sbjct: 179 KCRDIEMSCAIFRRMEQKSVASWSAIIAAHASLAMWWECLALFEDMSREGCWRAEESILV 238
Query: 256 GVLTACVHTGLVDEGR-KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM- 313
VL+AC H G GR + ++ +L + ++D++ K G L++ + + M
Sbjct: 239 NVLSACTHLGAFHLGRCAHGSLLKNITELNVAVM--TSLMDMYVKCGSLQKGLCLFQNMT 296
Query: 314 ---RLEPNVIIWG 323
+L +VII G
Sbjct: 297 RKNQLSYSVIISG 309
>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
Length = 1229
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 132/433 (30%), Positives = 223/433 (51%), Gaps = 43/433 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+++F M +V D ++ +LK+C+ + + +H K+G S ++V L+
Sbjct: 125 VKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSM 184
Query: 61 YVVTSF-GFARKLFDELPERNAVTWNTMIKGYSK-------------------------- 93
Y F AR + DE+ R+ V+WN+++ GY++
Sbjct: 185 YGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTM 244
Query: 94 -----------SGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNE 142
+ NV +D F +M +++ SW+ MI Y+ ++L+ M +
Sbjct: 245 ASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRM-EAD 303
Query: 143 GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLK 202
G PD ++I +VL C ++ L GK HG+I + + N + L+DMYAKCG L+
Sbjct: 304 GFEPDAVSITSVLPACGDTSALSL--GKKIHGYIERKKLIPNLLLENALIDMYAKCGCLE 361
Query: 203 YALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACV 262
A VFE M+ R+V+SWTA+I G DA++LF +Q +G+ P+ + F L AC
Sbjct: 362 KARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACS 421
Query: 263 HTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
H GL++EGR FK++ + Y + PR++H CMVDL G+AG ++EAY I+ M +EPN +W
Sbjct: 422 HAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVW 481
Query: 323 GSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382
G+ L AC+ H D+ + L + PE G + L+ ++Y +WE +R +M
Sbjct: 482 GALLGACRVHSDTDIG-LLAADKLFQLAPEQ-SGYYVLLSNIYAKAGRWEEVTNIRNIMK 539
Query: 383 NQNVRKARGSSVI 395
++ ++K G+S +
Sbjct: 540 SKGLKKNPGASNV 552
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 123/261 (47%), Gaps = 15/261 (5%)
Query: 87 MIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
+++ Y+ +V AR F+ +P RNV + MI +Y+N G Y G+K+F M + P
Sbjct: 80 LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGC-NVRP 138
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
D T VL CS G++ ++G+ HG K + LV MY KCGFL A +
Sbjct: 139 DHYTFPCVLKACSCSGTI--VIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARL 196
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT-- 264
V + M R+V+SW +L+ G A +DAL + M++ + + T +L A +T
Sbjct: 197 VLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTT 256
Query: 265 -GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR---LEPNVI 320
++ +FKM + + + M+ ++ K EA E+ M EP+ +
Sbjct: 257 ENVMYVKDMFFKMGKKS------LVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAV 310
Query: 321 IWGSFLAACKEHKQFDMAERV 341
S L AC + + +++
Sbjct: 311 SITSVLPACGDTSALSLGKKI 331
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 76/318 (23%), Positives = 129/318 (40%), Gaps = 73/318 (22%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L+S+M D+ SI +L +C + L++ +H G+I + +LL E
Sbjct: 294 VELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIH------GYIERKKLIPNLLLE 347
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
N +I Y+K G + +ARD FE M R+V SW+AMI+
Sbjct: 348 ------------------------NALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMIS 383
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
AY +G + LF ++ + GL PD + L+ CSH G L G+S + +
Sbjct: 384 AYGFSGRGCDAVALFSKL-QDSGLVPDSIAFVTTLAACSHAGL--LEEGRSCFKLMT-DH 439
Query: 181 WELNEQIATI--LVDMYAKCGFLKYALMVFELME-ERNVISWTALICGS----------- 226
+++ ++ + +VD+ + G +K A + M E N W AL+
Sbjct: 440 YKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLL 499
Query: 227 -----------------------AHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263
A G E+ ++ +M++ G+K N + +H
Sbjct: 500 AADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIH 559
Query: 264 TGLVDEGRKYFKMIDEEY 281
T LV G + DE Y
Sbjct: 560 TFLV--GDRSHPQSDEIY 575
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 88/189 (46%), Gaps = 3/189 (1%)
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR 229
++ H I+ + N + L+ YA + A VF+ + ERNVI +I +
Sbjct: 59 RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118
Query: 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQH 289
G+ + + +F M V+P+ TF VL AC +G + GRK + L +
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSA-TKVGLSSTLFV 177
Query: 290 YGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349
+V ++GK GFL EA V+ M +V+ W S + ++++FD A V ++ + V
Sbjct: 178 GNGLVSMYGKCGFLSEARLVLDEMSRR-DVVSWNSLVVGYAQNQRFDDALEVCRE-MESV 235
Query: 350 KPENDGGVF 358
K +D G
Sbjct: 236 KISHDAGTM 244
>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 1227
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 125/395 (31%), Positives = 220/395 (55%), Gaps = 36/395 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF +M + V D +S+ +L +C N+L +H++I K
Sbjct: 740 IRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRK---------------- 783
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ LP NA ++ Y+K G++ EA F ++P++++ SW+ MI
Sbjct: 784 ---------NNMALCLPVSNA-----LMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIG 829
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y + LKLF EM PD +T+ +L C L + L +G+ HG I++N
Sbjct: 830 GYSKNSLPNEALKLFAEMQKES--RPDGITMACLLPACGSLAA--LEIGRGIHGCILRNG 885
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ +A L+DMY KCG L +A ++F+++ E+++I+WT +I G G +A++ F+
Sbjct: 886 YSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQ 945
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ G+KP+E+TFT +L AC H+GL++EG +F + E ++EP+++HY CMVDL +
Sbjct: 946 KMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLART 1005
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G L +AY +I TM ++P+ IWG+ L C+ H ++AE+V + + +P+N G + L
Sbjct: 1006 GNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFEL-EPDN-AGYYVL 1063
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y EKWE +++R+ + + ++K+ G S I
Sbjct: 1064 LANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWI 1098
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 165/350 (47%), Gaps = 35/350 (10%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF +M + + +S++ ILK + +H + KLGF S+ V
Sbjct: 540 LFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVV-------- 591
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
N++I Y KSG V A F+ + R+V SW++MI+
Sbjct: 592 ----------------------NSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGC 629
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+ G L+ F +M+ + D T+ ++ C+++GS+ L G++ HG VK +
Sbjct: 630 VMNGFSHSALEFFVQMLILR-VGVDLATLVNSVAACANVGSLSL--GRALHGQGVKACFS 686
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
L+DMY+KCG L A+ FE M ++ V+SWT+LI G +DA+ LF M
Sbjct: 687 REVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEM 746
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
++ GV P+ + T VL AC +D+GR I + ++ + ++D++ K G
Sbjct: 747 ESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYI-RKNNMALCLPVSNALMDMYAKCGS 805
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE 352
+EEAY V + ++ +++ W + + ++ + A ++ + + +P+
Sbjct: 806 MEEAYLVFSQIPVK-DIVSWNTMIGGYSKNSLPNEALKLFAEMQKESRPD 854
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 114/253 (45%), Gaps = 8/253 (3%)
Query: 91 YSKSGNVCEARDFFERMPLRN-VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQM 149
Y G + E R F+ + N V W+ M++ Y G Y + LF++M G+T +
Sbjct: 496 YVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKM-QKLGITGNSY 554
Query: 150 TIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFE 209
T +L + LG VG K HG + K + + L+ Y K G + A +F+
Sbjct: 555 TFSCILKCFATLGRVGEC--KRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFD 612
Query: 210 LMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
+ +R+V+SW ++I G G+S AL F M V + T + AC + G +
Sbjct: 613 ELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSL 672
Query: 270 GRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
GR + + + + E + ++D++ K G L +A + M + V+ W S +AA
Sbjct: 673 GRALHGQGVKACFSRE--VMFNNTLLDMYSKCGNLNDAIQAFEKMG-QKTVVSWTSLIAA 729
Query: 329 CKEHKQFDMAERV 341
+D A R+
Sbjct: 730 YVREGLYDDAIRL 742
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 75/166 (45%), Gaps = 11/166 (6%)
Query: 169 GKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFE-LMEERNVISWTALICGSA 227
GK H I N + + LV MY CG L+ +F+ ++ + V W ++ A
Sbjct: 470 GKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYA 529
Query: 228 HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRI 287
G +++ LF+ MQ G+ N TF+ +L G V E ++ + Y L
Sbjct: 530 KIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCV---YKL--GF 584
Query: 288 QHYGCMVD----LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAAC 329
Y +V+ + K+G ++ A+++ + + +V+ W S ++ C
Sbjct: 585 GSYNTVVNSLIATYFKSGEVDSAHKLFDELG-DRDVVSWNSMISGC 629
>gi|147833477|emb|CAN75184.1| hypothetical protein VITISV_001911 [Vitis vinifera]
Length = 596
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 144/454 (31%), Positives = 229/454 (50%), Gaps = 64/454 (14%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+QLF +M ++ DSF+++ +K+C + HS +KL YVA +L++
Sbjct: 47 LQLFKRMLKEGKLVDSFNLVFAVKACFGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNV 106
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGY---------------------------- 91
Y + S A K+F+E+P +N+V W MIKGY
Sbjct: 107 YTELGSLEEAHKVFEEVPLKNSVIWGVMIKGYLNFSEEFGVFELFSRMRRSGFELDPFVV 166
Query: 92 -----------------------SKSGNVCEARDF-------FERMPLRNVASWSAMIAA 121
SG V E R F FE + RBV WSA+IA
Sbjct: 167 EGLIQACGNVYAGKEGKTFHGLYFSSGYVYEVRGFLDXALXLFEXIXYRBVVVWSAIIAG 226
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
+ G + +FR+M+++ +TP+ +T +++ CS LGS L G+S HG++++N
Sbjct: 227 FARNGRALESISMFRQMLADS-VTPNSVTFASIVLACSSLGS--LKQGRSVHGYMIRNGV 283
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
EL+ + T +DMYAKCG + A VF + E+NV SW+ +I G G +AL+LF
Sbjct: 284 ELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYE 343
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M++ PN +TF VL+AC H+G ++EG +FK + +Y + P +HY CMVDL G+AG
Sbjct: 344 MRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAG 403
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
++EA I M EP WG+ L AC+ H++ ++AE V K+ L + + GV+ ++
Sbjct: 404 KIDEALSFINNMPTEPGASAWGALLGACRIHRRAELAEEVAKKLLPL--ESDQSGVYVML 461
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y WE ++ R M + + K G + I
Sbjct: 462 SNIYADVGMWEMVKKTRLKMCEKGLLKIVGFTSI 495
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 26/247 (10%)
Query: 87 MIKG-YSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLT 145
MI G Y + G++ A F + N+ SW+ ++A++ + L+LF+ M+ EG
Sbjct: 1 MIFGAYIQLGSLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRML-KEGKL 59
Query: 146 PDQMTIGAVLSGCSHLGSVGLLMG-KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
D + + C L L G K H +K E + +A L+++Y + G L+ A
Sbjct: 60 VDSFNLVFAVKACFGLS---LFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEA 116
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSED--ALSLFEMMQATGVKPNEMTFTGVLTACV 262
VFE + +N + W +I G + +SE+ LF M+ +G + + G++ AC
Sbjct: 117 HKVFEEVPLKNSVIWGVMIKG--YLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACG 174
Query: 263 HTGLVDEGRKYFKM-IDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVII 321
+ EG+ + + Y E R GFL+ A + + BV++
Sbjct: 175 NVYAGKEGKTFHGLYFSSGYVYEVR--------------GFLDXALXLFEXIXYR-BVVV 219
Query: 322 WGSFLAA 328
W + +A
Sbjct: 220 WSAIIAG 226
>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
Length = 605
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 118/328 (35%), Positives = 192/328 (58%), Gaps = 5/328 (1%)
Query: 67 GFARKLFDELPER-NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
G A LF PE+ +A+ W M+ GY +GNV +A ++F MP+RN+ SW+A++A Y+
Sbjct: 151 GAAENLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKN 210
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
L++F+ M+ + + P+ T+ +VL GCS+L ++G G+ H + +K +
Sbjct: 211 SRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGF--GRQVHQWCMKLPLGRSI 268
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
+ T L+ MY KCG L A +F+ M +++++W A+I G A G A+ LFE M+
Sbjct: 269 TVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDE 328
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305
GV P+ +T VLTAC+HTGL D G + F+ + E Y++EP++ HY CMVDL +AG LE
Sbjct: 329 GVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYNIEPQVDHYSCMVDLLCRAGLLER 388
Query: 306 AYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365
A +I +M EP+ +G+ L AC+ +K + AE ++ + P+N G + + ++Y
Sbjct: 389 AVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQ-DPQN-AGAYVQLANIY 446
Query: 366 TMNEKWEGAERVRKLMLNQNVRKARGSS 393
+ +W+ RVR+ M + V K G S
Sbjct: 447 AVANRWDDVSRVRRWMKDNAVVKTPGYS 474
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 131/266 (49%), Gaps = 15/266 (5%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR+LFD +P +AV++NT++ + G++ A F MP+R+V SW+ M++ GA
Sbjct: 60 ARRLFDSIPHPDAVSYNTLLSCHFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAI 119
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ +FR M + ++ + M SG MG + + F +N E + I
Sbjct: 120 EEAEAMFRAMPARNAVSWNAMVAARASSG---------DMGAAENLF--RNAPEKTDAIL 168
Query: 189 -TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE-MMQATG 246
T +V Y G ++ A+ F M RN++SW A++ G + DAL +F+ M++
Sbjct: 169 WTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAI 228
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
V+PN T + VL C + + GR+ + + L I ++ ++ K G L++A
Sbjct: 229 VQPNPSTLSSVLLGCSNLSALGFGRQVHQWC-MKLPLGRSITVGTSLLSMYCKCGDLDDA 287
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEH 332
++ M + +++ W + ++ +H
Sbjct: 288 CKLFDEMHTK-DIVAWNAMISGYAQH 312
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 41/216 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILH-ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+++F M ++ + S L +L C++ + L +H +KL + V TSLL
Sbjct: 217 LRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLS 276
Query: 60 EYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y A KLFDE+ ++ V WN MI GY++ G +A FE+M
Sbjct: 277 MYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEKM----------- 325
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF-IV 177
+EG+ PD +T+ AVL+ C H G L F +
Sbjct: 326 ---------------------KDEGVVPDWITLLAVLTACIHTG----LCDFGIQCFETM 360
Query: 178 KNEWELNEQIA--TILVDMYAKCGFLKYALMVFELM 211
+ + + Q+ + +VD+ + G L+ A+ + M
Sbjct: 361 QEAYNIEPQVDHYSCMVDLLCRAGLLERAVNMIHSM 396
>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g23330
gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 715
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 128/395 (32%), Positives = 217/395 (54%), Gaps = 35/395 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+++ +M + DSF++ +L + + ++ +H ++++ G S VY+ +SL
Sbjct: 227 LRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSL--- 283
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ Y+KS + ++ F R+ R+ SW++++A
Sbjct: 284 ---------------------------VDMYAKSARIEDSERVFSRLYCRDGISWNSLVA 316
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y+ G Y+ L+LFR+M++ + + P + +V+ C+HL + L +GK HG++++
Sbjct: 317 GYVQNGRYNEALRLFRQMVTAK-VKPGAVAFSSVIPACAHLAT--LHLGKQLHGYVLRGG 373
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ N IA+ LVDMY+KCG +K A +F+ M + +SWTA+I G A G+ +A+SLFE
Sbjct: 374 FGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFE 433
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ GVKPN++ F VLTAC H GLVDE YF + + Y L ++HY + DL G+A
Sbjct: 434 EMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRA 493
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G LEEAY I M +EP +W + L++C HK ++AE+V ++ V EN G + L
Sbjct: 494 GKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIF-TVDSEN-MGAYVL 551
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+C++Y N +W+ ++R M + +RK S I
Sbjct: 552 MCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWI 586
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 105/381 (27%), Positives = 176/381 (46%), Gaps = 22/381 (5%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV 63
F +M D +LKSCT +L +H I++LG +Y +L++ Y
Sbjct: 93 FVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYA- 151
Query: 64 TSFGFARKL-----FDELPERNAVTWNTMIKGYS--KSGNVCEARDFFERMPLRNVASWS 116
G K+ FDE+P+R + + + +K + + R FE MP ++V S++
Sbjct: 152 KLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYN 211
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
+IA Y +G Y+ L++ REM + + L PD T+ +VL S V ++ GK HG++
Sbjct: 212 TIIAGYAQSGMYEDALRMVREMGTTD-LKPDSFTLSSVLPIFSEY--VDVIKGKEIHGYV 268
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
++ + + I + LVDMYAK ++ + VF + R+ ISW +L+ G G +AL
Sbjct: 269 IRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEAL 328
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
LF M VKP + F+ V+ AC H + G++ + I +VD+
Sbjct: 329 RLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRG-GFGSNIFIASALVDM 387
Query: 297 FGKAGFLEEAYEVIRTMRLEPNV----IIWGSFLAACKEHKQFDMAERVIKQALRMVKPE 352
+ K G ++ A ++ M + V II G L H+ + E + +Q VKP
Sbjct: 388 YSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHG-HGHEAVSLFEEMKRQG---VKPN 443
Query: 353 NDG--GVFTLICDLYTMNEKW 371
V T + ++E W
Sbjct: 444 QVAFVAVLTACSHVGLVDEAW 464
>gi|334187761|ref|NP_197403.2| mitochondrial editing factor 18 [Arabidopsis thaliana]
gi|223635651|sp|P0C8Q8.1|PP394_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g19020, mitochondrial; Flags: Precursor
gi|332005257|gb|AED92640.1| mitochondrial editing factor 18 [Arabidopsis thaliana]
Length = 685
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 220/363 (60%), Gaps = 12/363 (3%)
Query: 37 HLHSHILKLGFISHVYVATSLLHEYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSG 95
LH I+K GF + ++ +++H Y V++ A + F+ + + + N +I G+ K+G
Sbjct: 326 QLHGTIVKRGFDCYDFLQATIIHFYAVSNDIKLALQQFEASVKDHIASRNALIAGFVKNG 385
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155
V +AR+ F++ +++ SW+AMI+ Y + + L LFREMIS+ + PD +T+ +V
Sbjct: 386 MVEQAREVFDQTHDKDIFSWNAMISGYAQSLSPQLALHLFREMISSSQVKPDAITMVSVF 445
Query: 156 SGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERN 215
S S LGS L GK AH ++ + N+ + ++DMYAKCG ++ AL +F + +N
Sbjct: 446 SAISSLGS--LEEGKRAHDYLNFSTIPPNDNLTAAIIDMYAKCGSIETALNIFH--QTKN 501
Query: 216 VIS-----WTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
+ S W A+ICGSA G+++ AL L+ +Q+ +KPN +TF GVL+AC H GLV+ G
Sbjct: 502 ISSSTISPWNAIICGSATHGHAKLALDLYSDLQSLPIKPNSITFVGVLSACCHAGLVELG 561
Query: 271 RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330
+ YF+ + ++ +EP I+HYGCMVDL GKAG LEEA E+I+ M ++ +V+IWG L+A +
Sbjct: 562 KTYFESMKSDHGIEPDIKHYGCMVDLLGKAGRLEEAKEMIKKMPVKADVMIWGMLLSASR 621
Query: 331 EHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKAR 390
H ++AE + L + P + GG ++ ++Y +WE VR+ M ++V +R
Sbjct: 622 THGNVEIAE-LAATELAAIDPSH-GGCKVMLSNVYADAGRWEDVALVREEMRTRDVEWSR 679
Query: 391 GSS 393
S
Sbjct: 680 AFS 682
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 103/364 (28%), Positives = 175/364 (48%), Gaps = 44/364 (12%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
M+LF +M + + ++ ++ +C+H + L S +KL V+V+T+LLH
Sbjct: 158 MELFREMRNLGIMLNEVTLATVISACSHLGGIWDCRMLQSLAIKLKLEGRVFVSTNLLHM 217
Query: 61 YVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + ARKLFDE+PERN VTWN M+ GYSK+G + +A + F+++ +++ SW MI
Sbjct: 218 YCLCLCLKDARKLFDEMPERNLVTWNVMLNGYSKAGLIEQAEELFDQITEKDIVSWGTMI 277
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
L D L + EM+ G+ P ++ + +LS + SVG G HG IVK
Sbjct: 278 DGCLRKNQLDEALVYYTEMLRC-GMKPSEVMMVDLLSASAR--SVGSSKGLQLHGTIVKR 334
Query: 180 EWELNEQIATILVDMYA-------------------------------KCGFLKYALMVF 208
++ + + ++ YA K G ++ A VF
Sbjct: 335 GFDCYDFLQATIIHFYAVSNDIKLALQQFEASVKDHIASRNALIAGFVKNGMVEQAREVF 394
Query: 209 ELMEERNVISWTALICGSAHRGYSEDALSLF-EMMQATGVKPNEMTFTGVLTACVHTGLV 267
+ ++++ SW A+I G A + AL LF EM+ ++ VKP+ +T V +A G +
Sbjct: 395 DQTHDKDIFSWNAMISGYAQSLSPQLALHLFREMISSSQVKPDAITMVSVFSAISSLGSL 454
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEV------IRTMRLEP-NVI 320
+EG++ ++ + P ++D++ K G +E A + I + + P N I
Sbjct: 455 EEGKRAHDYLNFS-TIPPNDNLTAAIIDMYAKCGSIETALNIFHQTKNISSSTISPWNAI 513
Query: 321 IWGS 324
I GS
Sbjct: 514 ICGS 517
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 93/418 (22%), Positives = 177/418 (42%), Gaps = 70/418 (16%)
Query: 18 SILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSF-GFARKLFDEL 76
+++ L SC N++T +H +LK G S+ Y+ S+L+ Y A +F +
Sbjct: 43 ALVSALGSCASSNDVTCGRQIHCRVLKSGLDSNGYICNSVLNMYAKCRLLADAESVFRDH 102
Query: 77 PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFR 136
+ ++ ++N M+ GY +S + +A F+ MP R+ S++ +I Y + ++LFR
Sbjct: 103 AKLDSASFNIMVDGYVRSRRLWDALKLFDVMPERSCVSYTTLIKGYAQNNQWSEAMELFR 162
Query: 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA 196
EM N G+ +++T+ V+S CSHLG G+ + +K + E ++T L+ MY
Sbjct: 163 EM-RNLGIMLNEVTLATVISACSHLG--GIWDCRMLQSLAIKLKLEGRVFVSTNLLHMYC 219
Query: 197 KCGFLKYALMVFELMEERN-------------------------------VISWTALICG 225
C LK A +F+ M ERN ++SW +I G
Sbjct: 220 LCLCLKDARKLFDEMPERNLVTWNVMLNGYSKAGLIEQAEELFDQITEKDIVSWGTMIDG 279
Query: 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC-----------VHTGLVDEGRKYF 274
+ ++AL + M G+KP+E+ +L+A +H +V G +
Sbjct: 280 CLRKNQLDEALVYYTEMLRCGMKPSEVMMVDLLSASARSVGSSKGLQLHGTIVKRGFDCY 339
Query: 275 KMIDE-------------------EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRL 315
+ E ++ I ++ F K G +E+A EV
Sbjct: 340 DFLQATIIHFYAVSNDIKLALQQFEASVKDHIASRNALIAGFVKNGMVEQAREVFDQTH- 398
Query: 316 EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG----GVFTLICDLYTMNE 369
+ ++ W + ++ + +A + ++ + + + D VF+ I L ++ E
Sbjct: 399 DKDIFSWNAMISGYAQSLSPQLALHLFREMISSSQVKPDAITMVSVFSAISSLGSLEE 456
>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 564
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 136/395 (34%), Positives = 218/395 (55%), Gaps = 39/395 (9%)
Query: 3 LFSQMHRQSVP-SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
LF ++ P +SF++ +LK+C +HSH+LK GF S ++V TSL++ Y
Sbjct: 78 LFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFY 137
Query: 62 -VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
GFARK+ FE MP+RN+ +W+AMI+
Sbjct: 138 GKCEEIGFARKV-------------------------------FEEMPVRNLVAWTAMIS 166
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
+ GA D ++LFREM G+ PD MT+ +V+S C+ G++ + G H +I K
Sbjct: 167 GHARVGAVDEAMELFREM-QKAGIQPDAMTLVSVVSACAVAGALDI--GYWLHAYIEKYF 223
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ +++T LVDMYAKCG ++ A VF M ++ +W+++I G A+ G ++DA+ F+
Sbjct: 224 VLTDLELSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQ 283
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M T V P+ +TF VL+AC H GLV GR+++ ++ E+ +EP ++HYGC VDL ++
Sbjct: 284 QMLETEVTPDHVTFLAVLSACAHGGLVSRGRRFWSLM-LEFGIEPSVEHYGCKVDLLCRS 342
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G +EEAY + TM++ PN W S L CK+ K ++ E V + L + +P N + +
Sbjct: 343 GLVEEAYRITTTMKIPPNAATWRSLLMGCKKKKLLNLGEIVARYLLEL-EPLNAEN-YIM 400
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
I +LY+ +WE +RK+M + ++ G S I
Sbjct: 401 ISNLYSSLSQWEKMSELRKVMKEKCIKPVPGCSSI 435
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 105/231 (45%), Gaps = 36/231 (15%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
M+LF +M + + D+ +++ ++ +C L + + LH++I K ++ + ++T+L+
Sbjct: 178 MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 237
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A+++F +P ++ W++MI G++ G +A D F+
Sbjct: 238 YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQ-------------- 283
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+M+ E +TPD +T AVLS C+H G V G+ +++
Sbjct: 284 -----------------QMLETE-VTPDHVTFLAVLSACAHGGLVS--RGRRFWSLMLEF 323
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHR 229
E + + VD+ + G ++ A + M+ N +W +L+ G +
Sbjct: 324 GIEPSVEHYGCKVDLLCRSGLVEEAYRITTTMKIPPNAATWRSLLMGCKKK 374
>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
Length = 688
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 136/401 (33%), Positives = 220/401 (54%), Gaps = 13/401 (3%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFI-SHVYVATSLLHEY 61
LF +M D ++ ++ +C +H+H++K + + + +L+ Y
Sbjct: 239 LFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMY 298
Query: 62 VVTSFGF-ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ AR +FD +P R+ V+ +++ GY+KS NV +A+ F +M +NV +W+ +IA
Sbjct: 299 AKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIA 358
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
AY G + ++LF ++ + + P T G VL+ C ++ L +G+ AH ++K
Sbjct: 359 AYAQNGEEEEAIRLFVQL-KRDSIWPTHYTYGNVLNACGNIAV--LQLGQQAHVHVLKEG 415
Query: 181 W------ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
+ E + + LVDMY K G + VFE M R+ +SW A+I G A G ++D
Sbjct: 416 FRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKD 475
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
AL LFE M + P+ +T GVL+AC H+GLVDEGR++F + E++ + P HY CMV
Sbjct: 476 ALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMV 535
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
DL G+AG L+EA E+I+ M EP+ ++W S L AC+ HK ++ ER + + PEN
Sbjct: 536 DLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRLHKNVELGERTAGRLFEL-DPEN- 593
Query: 355 GGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G + L+ ++Y KW RVR+ M ++ V K G S I
Sbjct: 594 SGPYVLLSNMYAEMGKWADVFRVRRSMKDRGVSKQPGCSWI 634
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 95/341 (27%), Positives = 153/341 (44%), Gaps = 34/341 (9%)
Query: 39 HSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNV 97
H +LK ++ +L+ Y + AR++FD +P RN ++N ++ Y++ G
Sbjct: 40 HGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYARLGRP 99
Query: 98 CEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKL-FREMISNEGLTPDQMTIGAVLS 156
EAR FE +P + S++A++AA G G L F + + + + + LS
Sbjct: 100 DEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALS 159
Query: 157 GCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNV 216
C+ L G+ HG + ++ + I T LVDMYAKC A VF+ M ERNV
Sbjct: 160 ACA--AEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNV 217
Query: 217 ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKM 276
+SW +LI G +AL LF M ATG P+E+T + V++AC EGR+
Sbjct: 218 VSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAH 277
Query: 277 IDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY----------------------------- 307
+ + L + +VD++ K G EA
Sbjct: 278 MVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVED 337
Query: 308 -EVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALR 347
+V+ + +E NVI W +AA ++ + + A R+ Q R
Sbjct: 338 AQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKR 378
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 106/232 (45%), Gaps = 43/232 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFI------SHVYVA 54
++LF Q+ R S+ ++ ++L +C + L + H H+LK GF S V+V
Sbjct: 370 IRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVG 429
Query: 55 TSLLHEYVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA 113
SL+ Y+ T S K+F+ + R+ V+WN MI GY+++G +A FERM
Sbjct: 430 NSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERM------ 483
Query: 114 SWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH 173
+ SNE PD +T+ VLS C H G V G+
Sbjct: 484 ------------------------LCSNE--NPDSVTMIGVLSACGHSGLVD--EGRRHF 515
Query: 174 GFIVKNEW-ELNEQIATILVDMYAKCGFLKYA-LMVFELMEERNVISWTALI 223
F+ ++ + T +VD+ + G LK A ++ ++ E + + W +L+
Sbjct: 516 HFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLL 567
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 89/222 (40%), Gaps = 44/222 (19%)
Query: 169 GKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAH 228
++AHG ++K+ + LV YA+ G L+ A VF+ + RN S+ AL+ A
Sbjct: 36 ARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYAR 95
Query: 229 RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQ 288
G ++A +LFE + P++ ++ V+ A L GR
Sbjct: 96 LGRPDEARALFEAIP----DPDQCSYNAVVAA-----LARHGR----------------- 129
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRTMRLEP---NVIIWGSFLAACKEHKQFDMAERVIKQA 345
G AG +A + M + N + S L+AC K E+V
Sbjct: 130 ---------GHAG---DALRFLAAMHADDFVLNAYSFASALSACAAEKDLRTGEQV--HG 175
Query: 346 LRMVKPE-NDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386
L P +D + T + D+Y E+ A RV M +NV
Sbjct: 176 LVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNV 217
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 132/401 (32%), Positives = 220/401 (54%), Gaps = 36/401 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ F +M R +V + +++ +L +C +L + + + S I G S++ +
Sbjct: 249 LAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLV------ 302
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
N +I YSK G++ +ARD FE + +++ SW+ MI
Sbjct: 303 ------------------------NALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIG 338
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y + +Y L LFR+M + P+ +T ++L C++LG++ L GK H +I K
Sbjct: 339 GYSHMNSYKEALALFRKM-QQSNVEPNDVTFVSILPACAYLGALDL--GKWIHAYIDKKF 395
Query: 181 WEL-NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
L N + T L+DMYAKCG ++ A VF M+ +++ SW A+I G A G++ AL LF
Sbjct: 396 LGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELF 455
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M+ G +P+++TF GVL+AC H GLV+ GR+ F + E+YD+ P++QHYGCM+DL G+
Sbjct: 456 RQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGR 515
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG +EA +++ M ++P+ IWGS L AC+ H ++ E K + +PEN G +
Sbjct: 516 AGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFEL-EPENPGA-YV 573
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLSV 400
L+ ++Y +W+ R+R + ++ ++K G S I SV
Sbjct: 574 LLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSV 614
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 108/345 (31%), Positives = 188/345 (54%), Gaps = 5/345 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ + +M V +S++ +LKSC +H H+LKLG S +V TSL++
Sbjct: 117 IDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINM 176
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y G+A +F + R+AV++ +I GY+ G + +AR FE +P+R+ SW+AMI
Sbjct: 177 YAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMI 236
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A Y +G ++ L F+EM + P++ T+ VLS C+ GS L +G +I +
Sbjct: 237 AGYAQSGRFEEALAFFQEM-KRANVAPNESTMVTVLSACAQSGS--LELGNWVRSWIEDH 293
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
N ++ L+DMY+KCG L A +FE + E+++ISW +I G +H ++AL+LF
Sbjct: 294 GLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALF 353
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MQ + V+PN++TF +L AC + G +D G+ ID+++ + ++D++ K
Sbjct: 354 RKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAK 413
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
G +E A +V M+ + ++ W + ++ H +MA + +Q
Sbjct: 414 CGNIEAAKQVFAGMKPK-SLGSWNAMISGLAMHGHANMALELFRQ 457
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 151/337 (44%), Gaps = 73/337 (21%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDEL 76
L +L +C F NL IH S I+K G + + + L+ ++ FG +A LF+ +
Sbjct: 36 LTLLSTCKSFQNLKQIH---SQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESI 92
Query: 77 PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFR 136
+ N WNTMI+G S S + A DF+ RM L
Sbjct: 93 EQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLC-------------------------- 126
Query: 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA 196
G+ P+ T +L C+ +G+ GK HG ++K E + + T L++MYA
Sbjct: 127 ------GVEPNSYTFPFLLKSCAKVGATQ--EGKQIHGHVLKLGLESDPFVHTSLINMYA 178
Query: 197 KCGFLKYALMVF----------------------------ELMEE---RNVISWTALICG 225
+ G L YA +VF L EE R+ +SW A+I G
Sbjct: 179 QNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAG 238
Query: 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP 285
A G E+AL+ F+ M+ V PNE T VL+AC +G ++ G + + E++ L
Sbjct: 239 YAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELG-NWVRSWIEDHGLGS 297
Query: 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
++ ++D++ K G L++A ++ + E ++I W
Sbjct: 298 NLRLVNALIDMYSKCGDLDKARDLFEGI-CEKDIISW 333
>gi|15228026|ref|NP_181211.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216191|sp|Q9ZQA1.1|PP188_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g36730
gi|4415918|gb|AAD20149.1| hypothetical protein [Arabidopsis thaliana]
gi|330254198|gb|AEC09292.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 501
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 139/397 (35%), Positives = 218/397 (54%), Gaps = 41/397 (10%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
++S+M R+ + + + +LK+C F LT + +LK GF VYV +L+H Y
Sbjct: 100 VYSEMKRRGIKPNKLTFPFLLKACASFLGLTAGRQIQVEVLKHGFDFDVYVGNNLIHLY- 158
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
G +K D AR F+ M RNV SW++++ A
Sbjct: 159 ----GTCKKTSD-------------------------ARKVFDEMTERNVVSWNSIMTAL 189
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+ G + + F EMI PD+ T+ +LS C L +GK H ++ E E
Sbjct: 190 VENGKLNLVFECFCEMIGKR-FCPDETTMVVLLSACGG----NLSLGKLVHSQVMVRELE 244
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF-EM 241
LN ++ T LVDMYAK G L+YA +VFE M ++NV +W+A+I G A G++E+AL LF +M
Sbjct: 245 LNCRLGTALVDMYAKSGGLEYARLVFERMVDKNVWTWSAMIVGLAQYGFAEEALQLFSKM 304
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M+ + V+PN +TF GVL AC HTGLVD+G KYF +++ + ++P + HYG MVD+ G+AG
Sbjct: 305 MKESSVRPNYVTFLGVLCACSHTGLVDDGYKYFHEMEKIHKIKPMMIHYGAMVDILGRAG 364
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFD---MAERVIKQALRMVKPENDGGVF 358
L EAY+ I+ M EP+ ++W + L+AC H D + E+V K+ + + +P+ G +
Sbjct: 365 RLNEAYDFIKKMPFEPDAVVWRTLLSACSIHHDEDDEGIGEKVKKRLIEL-EPKRSGNL- 422
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++ + + W A VR++M ++K G S +
Sbjct: 423 VIVANRFAEARMWAEAAEVRRVMKETKMKKIAGESCL 459
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 81/335 (24%), Positives = 140/335 (41%), Gaps = 49/335 (14%)
Query: 20 LHILKSCTHFNNLTVIH---HLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDEL 76
L LK C+ +L IH HL S IS + +SL + FAR L
Sbjct: 17 LIFLKLCSSIKHLLQIHGQIHLSSLQNDSFIISELVRVSSL---SLAKDLAFARTLLLHS 73
Query: 77 PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFR 136
+ TWN + +GYS S + P+ ++ +S M
Sbjct: 74 SDSTPSTWNMLSRGYSSSDS-----------PVESIWVYSEM------------------ 104
Query: 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA 196
G+ P+++T +L C+ +GL G+ ++K+ ++ + + L+ +Y
Sbjct: 105 ---KRRGIKPNKLTFPFLLKACASF--LGLTAGRQIQVEVLKHGFDFDVYVGNNLIHLYG 159
Query: 197 KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTG 256
C A VF+ M ERNV+SW +++ G F M P+E T
Sbjct: 160 TCKKTSDARKVFDEMTERNVVSWNSIMTALVENGKLNLVFECFCEMIGKRFCPDETTMVV 219
Query: 257 VLTACVHTGLVDEGR-KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRL 315
+L+AC G + G+ + +++ E +L R+ +VD++ K+G LE A V M +
Sbjct: 220 LLSAC--GGNLSLGKLVHSQVMVRELELNCRLG--TALVDMYAKSGGLEYARLVFERM-V 274
Query: 316 EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVK 350
+ NV W + + Q+ AE ++ +M+K
Sbjct: 275 DKNVWTWSAMIVGL---AQYGFAEEALQLFSKMMK 306
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 88/187 (47%), Gaps = 13/187 (6%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+ F +M + D +++ +L +C NL++ +HS ++ + + T+L+ Y
Sbjct: 200 ECFCEMIGKRFCPDETTMVVLLSACG--GNLSLGKLVHSQVMVRELELNCRLGTALVDMY 257
Query: 62 VVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERM----PLR-NVASW 115
+ +AR +F+ + ++N TW+ MI G ++ G EA F +M +R N ++
Sbjct: 258 AKSGGLEYARLVFERMVDKNVWTWSAMIVGLAQYGFAEEALQLFSKMMKESSVRPNYVTF 317
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
++ A + G D G K F EM + P + GA++ LG G L A+ F
Sbjct: 318 LGVLCACSHTGLVDDGYKYFHEMEKIHKIKPMMIHYGAMV---DILGRAGRL--NEAYDF 372
Query: 176 IVKNEWE 182
I K +E
Sbjct: 373 IKKMPFE 379
>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 635
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 133/395 (33%), Positives = 215/395 (54%), Gaps = 35/395 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F +M + F+I +L +C + LH +K ++YV T+LL
Sbjct: 147 LDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALL-- 204
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
Y+K G + +A FE M ++ +WS+M+A
Sbjct: 205 ----------------------------DLYAKCGMIKDAVQVFESMQDKSSVTWSSMVA 236
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y+ Y+ L L+R L +Q T+ +V+ CS+L + L+ GK H I K+
Sbjct: 237 GYVQNKNYEEALLLYRRA-QRMSLEQNQFTLSSVICACSNLAA--LIEGKQMHAVICKSG 293
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ N +A+ VDMYAKCG L+ + ++F ++E+N+ W +I G A ++ + LFE
Sbjct: 294 FGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFE 353
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
MQ G+ PNE+TF+ +L+ C HTGLV+EGR++FK++ Y L P + HY CMVD+ G+A
Sbjct: 354 KMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRA 413
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G L EAYE+I+++ +P IWGS LA+C+ +K ++AE V + L ++PEN G L
Sbjct: 414 GLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAE-VAAEKLFELEPENAGN-HVL 471
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y N++WE + RKL+ + +V+K RG S I
Sbjct: 472 LSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWI 506
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 131/257 (50%), Gaps = 5/257 (1%)
Query: 78 ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
E + N +I YSK G V AR F+ M R++ SW+ MI Y L +F E
Sbjct: 93 EGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLE 152
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
M NEG + TI +VLS C + L K H VK +LN + T L+D+YAK
Sbjct: 153 M-RNEGFKFSEFTISSVLSACG--VNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAK 209
Query: 198 CGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGV 257
CG +K A+ VFE M++++ ++W++++ G E+AL L+ Q ++ N+ T + V
Sbjct: 210 CGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSV 269
Query: 258 LTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEP 317
+ AC + + EG++ +I + + VD++ K G L E+Y + ++ E
Sbjct: 270 ICACSNLAALIEGKQMHAVICKS-GFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQ-EK 327
Query: 318 NVIIWGSFLAACKEHKQ 334
N+ +W + ++ +H +
Sbjct: 328 NLELWNTIISGFAKHAR 344
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 119/223 (53%), Gaps = 6/223 (2%)
Query: 154 VLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE 213
+L C+ G+V + K+ HG I++ + E + + +L++ Y+KCGF++ A VF+ M E
Sbjct: 67 ILQLCARNGAV--MEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLE 124
Query: 214 RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC-VHTGLVDEGRK 272
R+++SW +I +AL +F M+ G K +E T + VL+AC V+ ++ +
Sbjct: 125 RSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKL 184
Query: 273 YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
+ + DL + ++DL+ K G +++A +V +M+ + + + W S +A ++
Sbjct: 185 HCLSVKTCIDLNLYVG--TALLDLYAKCGMIKDAVQVFESMQ-DKSSVTWSSMVAGYVQN 241
Query: 333 KQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAE 375
K ++ A + ++A RM +N + ++IC + EG +
Sbjct: 242 KNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQ 284
>gi|326507326|dbj|BAJ95740.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 798
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 137/394 (34%), Positives = 223/394 (56%), Gaps = 7/394 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L+SQM + +L +C +L +H+ LK+G ++V+V++SL+
Sbjct: 366 VKLYSQMLADGCRPNISCFSSVLSACATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDM 425
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A+ +FD LPE+N V WN++ GYS +G + EA F++MP RN+ASW+ +I
Sbjct: 426 YCKCKKCRDAQTIFDTLPEKNIVCWNSLASGYSYNGKMVEAMYLFKKMPARNLASWNTII 485
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y + L+ F M+++ G P ++T +VL C++L S L+ GK AH +K
Sbjct: 486 SGYAQNRQFVDALRSFNAMLAS-GQVPGEITFSSVLLACANLCS--LVTGKMAHAKTIKL 542
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
E + I T L DMYAK G L+ + +F M ERN ++WTA+I G A G++E+++ L
Sbjct: 543 GMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERNDVTWTAMIQGLAENGFAEESILLL 602
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
E M ATG+ PNE TF +L AC H GLV++ YF+ + + + + P+ +HY CMVD+ +
Sbjct: 603 EDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFEKM-QAWGISPKEKHYTCMVDVLAR 661
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG L EA ++ + W + L+AC +K ++ ER K+ L + +N G +
Sbjct: 662 AGRLIEAEALLMKTPSKSEANSWAALLSACNTYKNEEIGERAAKR-LHELGKDNTAG-YV 719
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
L+ ++Y +W+ A R+R LM ++K G S
Sbjct: 720 LLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCS 753
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/415 (24%), Positives = 179/415 (43%), Gaps = 44/415 (10%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L + R V +D+ H+L + F + G S + ++HE
Sbjct: 102 LSLHAHAVRSGVAADTSVASHLLTTYAAFARAAECDRAFGDCVAAGAASP-FTYDFMVHE 160
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
+V AR LFD +PERN V++ TM+ K G V EA + +E+ P +VA ++A I
Sbjct: 161 HVKAGDIASARGLFDGMPERNVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATI 220
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL------------ 167
+ ++ + L +FR+M+S G+ P+ +T ++ C G GL
Sbjct: 221 SGFVRNELHHNALGVFRKMVSC-GVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIKSNF 279
Query: 168 -----------------MGKSAHGFIVKNEWELNEQIA-TILVDMYAKCGFLKYALMVFE 209
MG +A V +E ++ + ++ T L+D+Y++ G L A V +
Sbjct: 280 FESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLD 339
Query: 210 LMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
M ERN +SW LI RG + +A+ L+ M A G +PN F+ VL+AC +++
Sbjct: 340 AMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSAC---ATLED 396
Query: 270 GRKYFKMIDEEYDLEPRIQHY--GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
R ++ + + ++D++ K +A + T+ E N++ W S +
Sbjct: 397 LRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLP-EKNIVCWNSLAS 455
Query: 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382
+ + A + K+ P + + I Y N ++ A R ML
Sbjct: 456 GYSYNGKMVEAMYLFKK-----MPARNLASWNTIISGYAQNRQFVDALRSFNAML 505
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 81/200 (40%), Gaps = 43/200 (21%)
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
T +VD K G + A+ ++E +V +TA I G +AL +F M + GV+
Sbjct: 186 TTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATISGFVRNELHHNALGVFRKMVSCGVR 245
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG---KAGFLEE 305
PN +TF ++ ACV G +G + + G K+ F E
Sbjct: 246 PNGITFVCMIKACVGAG-----------------------EFGLAMSIVGSAIKSNFFES 282
Query: 306 AYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365
+ EV ++ + ++ A K FD E +K + +T + D+Y
Sbjct: 283 SIEVQNSL-----ITLYLRMGDAAAARKVFD--EMDVKDVVS----------WTALLDVY 325
Query: 366 TMNEKWEGAERVRKLMLNQN 385
+ + +GA RV M +N
Sbjct: 326 SESGDLDGARRVLDAMPERN 345
>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 558
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 136/394 (34%), Positives = 213/394 (54%), Gaps = 39/394 (9%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-V 62
F M +P D+F+ +LK+C+ L + HLHS I+K G S ++V +L+ Y
Sbjct: 75 FFSMRSNGIPLDNFTFPFVLKACSR---LQINLHLHSLIVKYGLDSDIFVQNALICVYGY 131
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
S A K+FDE+ E R+ SWS +IA++
Sbjct: 132 CGSLEMAVKVFDEMSE-------------------------------RDSVSWSTVIASF 160
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
LN G L LF +M + + PD++T+ +V+S SHLG L +G+ FI +
Sbjct: 161 LNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGD--LELGRWVRAFIGRLGLG 218
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
++ + T L+DM+++CG + +++VFE M RNV++WTALI G G S +AL++F M
Sbjct: 219 VSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGVHGRSTEALAMFHSM 278
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
+ +GV+P+ +TF+GVL AC H GLV EG F+ I + Y ++P + HYGCMVD+ G+AG
Sbjct: 279 RKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVYRMDPLLDHYGCMVDILGRAGL 338
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362
L EAY+ + M ++PN IIW + L AC H +AE+V + ++ +N G L+
Sbjct: 339 LNEAYDFVERMPMKPNSIIWRTLLGACVNHNNLGLAEKVKAKISKISSSQN--GDLVLLS 396
Query: 363 DLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
++Y +W +R M + + K G S I+
Sbjct: 397 NVYGAAGRWVEKASIRSKMREKRIGKEPGCSSIN 430
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 8/158 (5%)
Query: 173 HGFIVKNEWELNE-QIATILVDMYAKCG-FLKYALMVFELMEERNVISWTALICGSAHRG 230
H +I+K+ + + + T+L+ A L YA VF + + I++ +I S R
Sbjct: 8 HCYIIKSSKQNDPLSLRTLLLSCVAAAPESLSYARYVFSRIPSPDTIAYNTII-RSHSRF 66
Query: 231 YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHY 290
+ +L F M++ G+ + TF VL AC + + + +Y L+ I
Sbjct: 67 FPSHSLFYFFSMRSNGIPLDNFTFPFVLKACSRLQI----NLHLHSLIVKYGLDSDIFVQ 122
Query: 291 GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
++ ++G G LE A +V M E + + W + +A+
Sbjct: 123 NALICVYGYCGSLEMAVKVFDEMS-ERDSVSWSTVIAS 159
>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
Length = 607
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 142/399 (35%), Positives = 218/399 (54%), Gaps = 39/399 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+QL+S+M S+ D++ + ILK+C L +HS LKLG S+ V ++
Sbjct: 115 IQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIM-- 172
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP----LRNVASWS 116
EL Y K G + +AR FE MP ++ W+
Sbjct: 173 --------------EL--------------YGKCGELGDARRVFEEMPEDVVAKDTVCWT 204
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
AMI ++ + L+ FR M E + P++ TI VLS CS LG+ L +G+ H ++
Sbjct: 205 AMIDGFVRNEEMNRALEAFRGM-QGENVRPNEFTIVCVLSACSQLGA--LEIGRWVHSYM 261
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
K E ELN + L++MY++CG + A VF+ M++R+VI++ +I G + G S A+
Sbjct: 262 RKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAI 321
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
LF +M ++P +TF GVL AC H GLVD G K F + +Y +EP+I+HYGCMVDL
Sbjct: 322 ELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDL 381
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
G+ G LEEAY++IRTM++ P+ I+ G+ L+ACK HK ++ E+V K + + + D G
Sbjct: 382 LGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAK--VLEDRGQADSG 439
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ +Y + KW+ A +VR M ++K G S I
Sbjct: 440 TYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSI 478
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 94/222 (42%), Gaps = 14/222 (6%)
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
DQ I ++L H+ V + H +++N + + L+ +KC + YA
Sbjct: 31 DQKQIISLLQRSKHINQVLPI-----HAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASR 85
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
+F+ NV +TALI G G DA+ L+ M + P+ +L AC
Sbjct: 86 IFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLA 145
Query: 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR---LEPNVIIWG 323
+ EGR+ + R+ M +L+GK G L +A V M + + + W
Sbjct: 146 LREGREVHSRALKLGLSSNRLVRLRIM-ELYGKCGELGDARRVFEEMPEDVVAKDTVCWT 204
Query: 324 SFLAACKEHKQFDMAERVIKQALRMVKPEN-DGGVFTLICDL 364
+ + +++ + A +A R ++ EN FT++C L
Sbjct: 205 AMIDGFVRNEEMNRA----LEAFRGMQGENVRPNEFTIVCVL 242
>gi|345505228|gb|AEN99838.1| chlororespiratory reduction 4, partial [Matthiola incana]
Length = 584
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 118/327 (36%), Positives = 193/327 (59%), Gaps = 4/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A+ LFD +P ++ VTW TMI GY+K G V +A+ F+ MP R+V ++++M+A Y+ +
Sbjct: 243 AKSLFDLMPRKDVVTWATMIDGYAKLGFVHQAKKLFDEMPQRDVVAYNSMMAGYVQNKYH 302
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ +F +M L+PD+ T+ VLS + LG L H +I+ N++ L ++
Sbjct: 303 AEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGR--LSKAVDIHLYIMDNKFRLGGKLG 360
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+D Y+KCG ++ ++ VFE +E +++ W A+I G A G E A + ++ +K
Sbjct: 361 VALIDTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIEKRSIK 420
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+++TF GVL AC H+GLV EG F+++ ++ +EP++QHYGCMVD+ ++G +E A
Sbjct: 421 PDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPKLQHYGCMVDILSRSGSIELAKN 480
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+I M +EPN +IW +FL AC HK+F+ E V K ++ + F L+ ++Y
Sbjct: 481 LIEEMPIEPNDVIWRTFLTACSNHKEFETGELVAKHLF--LQGGYNPSSFVLLSNMYASF 538
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
W+ RVR M + +RK G S I
Sbjct: 539 GMWKEVRRVRTTMKERKLRKIPGCSWI 565
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 92/364 (25%), Positives = 180/364 (49%), Gaps = 33/364 (9%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF M SV D FSI +LK+C+ + +H + K G S +++ L+ Y+
Sbjct: 80 LFCLMIENSVSVDKFSISLVLKACSRLGFVDFGMQVHGFLRKTGIYSDLFLQNCLIGLYL 139
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL--RNVASWSAMI 119
GFAR++FD +P+R++V++N+MI GY K G + AR+ F+ MP +N+ SW+ MI
Sbjct: 140 KCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMPREKKNLISWNCMI 199
Query: 120 AAYLNA-GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
+ Y + + KLF EM + ++ + + G ++ + KS + +
Sbjct: 200 SGYTQSEDGVNVASKLFDEMPEKDLISWNSLIDG-------YVKHRRIEDAKSLFDLMPR 252
Query: 179 NE---WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
+ W ++D YAK GF+ A +F+ M +R+V+++ +++ G Y +A
Sbjct: 253 KDVVTW-------ATMIDGYAKLGFVHQAKKLFDEMPQRDVVAYNSMMAGYVQNKYHAEA 305
Query: 236 LSLF-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCM 293
+ +F +M + + + P+E T VL+A G + + + ++D ++ L ++ +
Sbjct: 306 IGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGGKLG--VAL 363
Query: 294 VDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH----KQFDMAERVIKQALRMV 349
+D + K G ++++ V + ++ W + + H FDM ++ K R +
Sbjct: 364 IDTYSKCGSIQKSMRVFEEIE-NKSIDHWNAMIGGLAIHGLGESAFDMLLQIEK---RSI 419
Query: 350 KPEN 353
KP++
Sbjct: 420 KPDD 423
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 116/246 (47%), Gaps = 33/246 (13%)
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
W+A+I ++ + L LF MI N ++ D+ +I VL CS LG V G HG
Sbjct: 61 WNAVIKSFSHGVDPRNALLLFCLMIEN-SVSVDKFSISLVLKACSRLGFVDF--GMQVHG 117
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
F+ K + + L+ +Y KCG L +A VF+ M +R+ +S+ ++I G G E
Sbjct: 118 FLRKTGIYSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLIES 177
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHT-----------------------GLVDEGR 271
A LF++M K N +++ +++ + L+D
Sbjct: 178 ARELFDLMPRE--KKNLISWNCMISGYTQSEDGVNVASKLFDEMPEKDLISWNSLIDGYV 235
Query: 272 KYFKMIDEE--YDLEPR--IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
K+ ++ D + +DL PR + + M+D + K GF+ +A ++ M + +V+ + S +A
Sbjct: 236 KHRRIEDAKSLFDLMPRKDVVTWATMIDGYAKLGFVHQAKKLFDEMP-QRDVVAYNSMMA 294
Query: 328 ACKEHK 333
++K
Sbjct: 295 GYVQNK 300
>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 121/395 (30%), Positives = 221/395 (55%), Gaps = 36/395 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF +M R+ V D F+I +L +C +L +H++I + S+++V
Sbjct: 84 IRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVC------ 137
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
N ++ Y+K G++ +A F MP++++ SW+ MI
Sbjct: 138 ------------------------NALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIG 173
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y + L LF +M+ + PD T+ +L C+ L S L GK HG I++N
Sbjct: 174 GYSKNSLPNEALSLFGDMVLE--MKPDGTTLACILPACASLAS--LDRGKEVHGHILRNG 229
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ ++Q+A LVDMY KCG A ++F+++ +++I+WT +I G G+ +A++ F
Sbjct: 230 FFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFN 289
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ G++P+E++F +L AC H+GL+DEG ++F ++ +E +++P+++HY C+VDL ++
Sbjct: 290 EMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARS 349
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G L AY+ I++M +EP+ IWG+ L+ C+ H +AE+V + + +PEN G + L
Sbjct: 350 GKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFEL-EPENT-GYYVL 407
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ + Y EKWE +++R+ + + ++K G S I
Sbjct: 408 LANTYAEAEKWEEVKKLRQKIGRRGLKKNPGCSWI 442
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 100/332 (30%), Positives = 153/332 (46%), Gaps = 41/332 (12%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
NT++ Y+K G + A F+ M +R V +W+++IAAY G D ++LF EM EG+
Sbjct: 37 NTLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEM-DREGV 95
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
+PD TI VL C+ GS L GK H +I +N+ + N + L+DMYAKCG ++ A
Sbjct: 96 SPDIFTITTVLHACACNGS--LENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDA 153
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
VF M +++ISW +I G + +ALSLF M +KP+ T +L AC
Sbjct: 154 NSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDM-VLEMKPDGTTLACILPACASL 212
Query: 265 GLVDEGRKYFKMI-------DEE---------------------YDLEPR--IQHYGCMV 294
+D G++ I D++ +D+ P + + M+
Sbjct: 213 ASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMI 272
Query: 295 DLFGKAGFLEEAYEVIRTMR---LEPNVIIWGSFLAACKEHKQFDMAERV--IKQALRMV 349
+G GF A MR +EP+ + + S L AC D R + Q V
Sbjct: 273 AGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNV 332
Query: 350 KPENDGGVFTLICDLYTMNEKWEGAERVRKLM 381
KP+ + + I DL + K A + K M
Sbjct: 333 KPKLEH--YACIVDLLARSGKLAMAYKFIKSM 362
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 109/212 (51%), Gaps = 8/212 (3%)
Query: 153 AVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME 212
++L C++ G V L G++ HG VK L+DMYAKCG L A++VF+LM
Sbjct: 3 SILQACANCGDVSL--GRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60
Query: 213 ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK 272
R V++WT+LI A G S++A+ LF M GV P+ T T VL AC G ++ G+
Sbjct: 61 VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKD 120
Query: 273 YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
I E D++ I ++D++ K G +E+A V M ++ ++I W + + ++
Sbjct: 121 VHNYI-RENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVK-DIISWNTMIGGYSKN 178
Query: 333 KQFDMAERVIKQALRMVKPENDGGVFTLICDL 364
+ A + + +KP+ TL C L
Sbjct: 179 SLPNEALSLFGDMVLEMKPDGT----TLACIL 206
>gi|326504712|dbj|BAK06647.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 658
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 130/380 (34%), Positives = 212/380 (55%), Gaps = 10/380 (2%)
Query: 19 ILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSF-GFARKLFDELP 77
++ ++K C + LH+ ILK GF +H +V +L+H Y AR F
Sbjct: 280 LVDLIKVCARHAAVLEGQQLHTVILKDGFDAHPFVQATLIHFYGSCDLLDIARMQFKLSD 339
Query: 78 ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
+ + +WN ++ G + EAR F+ MP R+ SWS +++ Y+ +G + L+LF
Sbjct: 340 KSHIASWNALMSGLLHRNLMHEARQLFDDMPERDTISWSTLLSGYVQSGHSNKALQLFYL 399
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
M+ G+ P+ +T+ + LS + G L G+ H +I+ N +L + ++ L+DMYAK
Sbjct: 400 ML-GAGVEPNDVTLASTLSAVADSGM--LEQGRFIHDYIISNSIQLTDNLSAGLIDMYAK 456
Query: 198 CGFLKYALMVFELMEER--NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT 255
CG + A+ +F ++ + +V W A+IC A G++ +L LF +Q T +KPN +T+
Sbjct: 457 CGSVADAIQLFSHVKHKLSSVSPWNAIICSLAIHGHAHTSLELFLELQRTNIKPNSVTYI 516
Query: 256 GVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRL 315
GVL AC H GLV EGR +F+ + EY ++P I+HYGCMVDL G+AG LEEA +I+ M +
Sbjct: 517 GVLNACCHAGLVTEGRHHFESMSREYGIQPTIKHYGCMVDLLGRAGHLEEAENLIQMMPM 576
Query: 316 EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAE 375
+V+IWGS LAA + H + E+ ++ L + P N G + +++ +W
Sbjct: 577 RSDVVIWGSILAAARTHGNVALGEKAAEE-LAKIDP-NHGASKVALSNIFAEAARWNNVS 634
Query: 376 RVRKLMLNQNVRKAR--GSS 393
VRK + +++ R GSS
Sbjct: 635 LVRKELQDEDENMGRFSGSS 654
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 91/364 (25%), Positives = 169/364 (46%), Gaps = 38/364 (10%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+F M Q VP + ++ +L + + H ++ G + VAT+L+H Y
Sbjct: 131 VFRGMLAQDVPPNEVTLAGVLTALALERPPVPVGVAHGVTVRRGLNGFLIVATNLVHAYA 190
Query: 63 VTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
S FAR++F+++P++N VTWN M+ GY K+G + A + F R+P R+ SW +I
Sbjct: 191 AASQVCFAREIFEQMPDKNTVTWNAMLNGYLKAGMLPMAAEVFGRIPERDAVSWLTIIDG 250
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ A L+ + M++ + + ++ C+ +V L G+ H I+K+ +
Sbjct: 251 YIRADCTSEALRAYVAMMAEVDTRGNAALLVDLIKVCARHAAV--LEGQQLHTVILKDGF 308
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFEL------------------------------- 210
+ + + L+ Y C L A M F+L
Sbjct: 309 DAHPFVQATLIHFYGSCDLLDIARMQFKLSDKSHIASWNALMSGLLHRNLMHEARQLFDD 368
Query: 211 MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
M ER+ ISW+ L+ G G+S AL LF +M GV+PN++T L+A +G++++G
Sbjct: 369 MPERDTISWSTLLSGYVQSGHSNKALQLFYLMLGAGVEPNDVTLASTLSAVADSGMLEQG 428
Query: 271 R-KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE-PNVIIWGSFLAA 328
R + +I L + ++D++ K G + +A ++ ++ + +V W + + +
Sbjct: 429 RFIHDYIISNSIQLTDNLS--AGLIDMYAKCGSVADAIQLFSHVKHKLSSVSPWNAIICS 486
Query: 329 CKEH 332
H
Sbjct: 487 LAIH 490
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 136/312 (43%), Gaps = 49/312 (15%)
Query: 37 HLHSHILKLGFI-SHVYVATSLLHEYV----VTSFGFARKLFDELPE--RNAVTWNTMIK 89
LH+ K G + S+ +V SLL Y + AR LFDE+P R+ NT++
Sbjct: 27 QLHALAAKSGLLASNTFVRNSLLAFYARLPSPQAPALARHLFDEIPLALRDPAAHNTLLA 86
Query: 90 GYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQM 149
+++G + A+ MP R+ S++ ++ A AG + + +FR M++ + + P+++
Sbjct: 87 SLARAGRLDLAQGMLAEMPQRDTVSYTTVLTALARAGHAEDAVAVFRGMLAQD-VPPNEV 145
Query: 150 TIGAVLS-----------GCSHLGSVGLLMGKSAHGFIVKN---------------EWEL 183
T+ VL+ G +H G+ + + +GF++ E+
Sbjct: 146 TLAGVLTALALERPPVPVGVAH----GVTVRRGLNGFLIVATNLVHAYAAASQVCFAREI 201
Query: 184 NEQIA-------TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
EQ+ +++ Y K G L A VF + ER+ +SW +I G + +AL
Sbjct: 202 FEQMPDKNTVTWNAMLNGYLKAGMLPMAAEVFGRIPERDAVSWLTIIDGYIRADCTSEAL 261
Query: 237 SLF-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI-DEEYDLEPRIQHYGCMV 294
+ MM + N ++ C V EG++ +I + +D P +Q ++
Sbjct: 262 RAYVAMMAEVDTRGNAALLVDLIKVCARHAAVLEGQQLHTVILKDGFDAHPFVQ--ATLI 319
Query: 295 DLFGKAGFLEEA 306
+G L+ A
Sbjct: 320 HFYGSCDLLDIA 331
>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
Length = 748
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 128/397 (32%), Positives = 211/397 (53%), Gaps = 37/397 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGF-ISHVYVATSLLH 59
+++F M V D ++L + + ++ +H ++++ G+ + + +++
Sbjct: 256 VEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVD 315
Query: 60 EYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y ++ A+++FD +P R+AV+WNT+I GY ++G EA
Sbjct: 316 MYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEA------------------ 357
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
+ ++ M +EGL P Q T +VL SHLG+ L G H +K
Sbjct: 358 -------------IHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGA--LQQGTRMHALSIK 402
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
L+ + T ++D+YAKCG L A+++FE R+ W A+I G G+ ALSL
Sbjct: 403 TGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSL 462
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F MQ G+ P+ +TF +L AC H GLVD+GR +F M+ Y ++P +HY CMVD+FG
Sbjct: 463 FSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFG 522
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG L++A++ IR M ++P+ IWG+ L AC+ H +M +V Q L + P+N G +
Sbjct: 523 RAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMG-KVASQNLFELDPKNV-GYY 580
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y KW+G + VR L+ QN++K G S I
Sbjct: 581 VLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSI 617
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 148/310 (47%), Gaps = 44/310 (14%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF +M + V D+ ++ +L C + + +H + +K G ++V +++ Y
Sbjct: 157 LFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVY- 215
Query: 63 VTSFGF---ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
G RK+FD + R+ VTWN++I G+ + G V A + F M
Sbjct: 216 -GKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGM------------ 262
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ G++PD +T+ ++ S + G + G+S H ++V+
Sbjct: 263 --------------------RDSGVSPDVLTLLSLASAIAQCGDI--CGGRSVHCYMVRR 300
Query: 180 EWELNEQIA-TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
W++ + IA +VDMYAK ++ A +F+ M R+ +SW LI G G + +A+ +
Sbjct: 301 GWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHV 360
Query: 239 FEMMQA-TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKM-IDEEYDLEPRIQHYGCMVDL 296
++ MQ G+KP + TF VL A H G + +G + + I +L+ + C++DL
Sbjct: 361 YDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGT--CVIDL 418
Query: 297 FGKAGFLEEA 306
+ K G L+EA
Sbjct: 419 YAKCGKLDEA 428
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 120/248 (48%), Gaps = 6/248 (2%)
Query: 80 NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI 139
+A ++ Y + G V +A F+ M R+V +W+AM++ + LF M+
Sbjct: 103 DAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMV 162
Query: 140 SNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG 199
EG+ D +T+ +VL C LG L + + H + VK+ + + ++D+Y K G
Sbjct: 163 M-EGVAGDAVTVSSVLPMCVLLGDRALAL--AMHLYAVKHGLDDELFVCNAMIDVYGKLG 219
Query: 200 FLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLT 259
L+ VF+ M R++++W ++I G G A+ +F M+ +GV P+ +T + +
Sbjct: 220 MLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLAS 279
Query: 260 ACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPN 318
A G + GR + M+ +D+ I +VD++ K +E A + +M + +
Sbjct: 280 AIAQCGDICGGRSVHCYMVRRGWDVGDIIAG-NAIVDMYAKLSKIEAAQRMFDSMPVR-D 337
Query: 319 VIIWGSFL 326
+ W + +
Sbjct: 338 AVSWNTLI 345
>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Brachypodium distachyon]
Length = 617
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 125/332 (37%), Positives = 195/332 (58%), Gaps = 13/332 (3%)
Query: 69 ARKLFDELPER-NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
A + F++ P++ NAV W M+ GY SG+V +A FFE MP+R++ SW+A++A Y+
Sbjct: 165 AEECFEDAPDKENAVLWTAMVSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSR 224
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
+ L +F+ M+ + + P++ T+ +VL GCS+L ++G G+ H + K
Sbjct: 225 AEDALWVFKTMVRDADVRPNESTLSSVLLGCSNLSALGF--GRQVHQWCTKLPLSRRVTA 282
Query: 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
T LV MY KCG L A +F M R+VI+W A+I G AH G +A+ LFE M++ GV
Sbjct: 283 GTSLVSMYCKCGDLDGACKLFSEMRIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQGV 342
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
+PN +TF VLTAC+HTG+ D G + F+ + E Y +E R+ HY CMVDL +AG LE A
Sbjct: 343 EPNWITFVAVLTACIHTGMCDFGMQCFERMQEVYGIEARVDHYSCMVDLLCRAGSLERAV 402
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEHKQFDMAE----RVIKQALRMVKPENDGGVFTLICD 363
+IR+M +P+ +G+ L A + +K + AE ++I+Q P+N G + + +
Sbjct: 403 SLIRSMPFQPHPSAYGTLLNASRVYKNMEFAEFAAGKLIEQ-----NPQN-AGAYVQLAN 456
Query: 364 LYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+Y + +W RVR+ M + V K G S +
Sbjct: 457 IYAVANQWADVSRVRRWMKDNAVVKTPGYSWV 488
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 135/267 (50%), Gaps = 15/267 (5%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP--LRNVASWSAMIAAYLNAG 126
AR LFD +P +AV++NT++ + +G+V ARD F MP RNV SW+ M++ +G
Sbjct: 70 ARHLFDRIPRPDAVSYNTLLSCHFAAGDVRGARDLFAAMPATARNVTSWNTMLSGLSRSG 129
Query: 127 AYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ 186
A +F M + + ++ A++S +H G M + F + E N
Sbjct: 130 AVGEARAVFLAMPAR-----NSISWNAMVSCFAHAGD----MCAAEECFEDAPDKE-NAV 179
Query: 187 IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE-MMQAT 245
+ T +V Y G ++ A+ FE M R+++SW A++ G +EDAL +F+ M++
Sbjct: 180 LWTAMVSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDA 239
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305
V+PNE T + VL C + + GR+ + + L R+ +V ++ K G L+
Sbjct: 240 DVRPNESTLSSVLLGCSNLSALGFGRQVHQWC-TKLPLSRRVTAGTSLVSMYCKCGDLDG 298
Query: 306 AYEVIRTMRLEPNVIIWGSFLAACKEH 332
A ++ MR+ +VI W + ++ H
Sbjct: 299 ACKLFSEMRIR-DVIAWNAMISGYAHH 324
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 6/142 (4%)
Query: 3 LFSQMHRQS-VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+F M R + V + ++ +L C++ + L +H KL V TSL+ Y
Sbjct: 231 VFKTMVRDADVRPNESTLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMY 290
Query: 62 V-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA----SWS 116
A KLF E+ R+ + WN MI GY+ G+ EA + FE+M + V ++
Sbjct: 291 CKCGDLDGACKLFSEMRIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFV 350
Query: 117 AMIAAYLNAGAYDPGLKLFREM 138
A++ A ++ G D G++ F M
Sbjct: 351 AVLTACIHTGMCDFGMQCFERM 372
>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
Length = 562
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 132/393 (33%), Positives = 215/393 (54%), Gaps = 36/393 (9%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV 63
+ +M + V D+F+ +LK+C + +H+HILKLG + V+V
Sbjct: 76 YKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQ--------- 126
Query: 64 TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL 123
N++I Y K G + FE+M R+VASWSA+I A+
Sbjct: 127 ---------------------NSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHA 165
Query: 124 NAGAYDPGLKLFREMISNEGL-TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+ G + L+L +M SNEG ++ + +VLS C+HLG++ L G+S HGF+++N
Sbjct: 166 SLGMWSDCLRLLGDM-SNEGYWRAEESILVSVLSACTHLGALDL--GRSVHGFLLRNVSG 222
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
LN + T L++MY KCG L + +F+ M ++N +S++ +I G A GY + L +F M
Sbjct: 223 LNVIVETSLIEMYLKCGXLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEM 282
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
G++P+++ + GVL AC H GLV EG + F + E+ +EP IQHYGCMVDL G+AG
Sbjct: 283 LEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGK 342
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362
++EA E+I++M +EPN ++W S L+A K H E KQ ++ + ++
Sbjct: 343 IDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKL--DSQKASDYVVLS 400
Query: 363 DLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y ++WE R R M ++ + + G S++
Sbjct: 401 NMYAQAQRWEDVARTRTNMFSKGLSQRPGFSLV 433
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 104/237 (43%), Gaps = 38/237 (16%)
Query: 39 HSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDELPERNAVTWNTMIKGYSKSG 95
H+ ILK G + A++L+ ++ +G +A +F ++ E + +NTM++G+ K
Sbjct: 8 HARILKXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMMRGHVKDM 67
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155
N EA L ++EM + G+ PD T +L
Sbjct: 68 NTEEA-------------------------------LITYKEM-AERGVKPDNFTYPTLL 95
Query: 156 SGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERN 215
C+ L +V G H I+K E + + L+ MY KCG + VFE M ER+
Sbjct: 96 KACARLPAVE--EGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERS 153
Query: 216 VISWTALICGSAHRGYSEDALSLFEMMQATGV-KPNEMTFTGVLTACVHTGLVDEGR 271
V SW+ALI A G D L L M G + E VL+AC H G +D GR
Sbjct: 154 VASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGR 210
>gi|449449673|ref|XP_004142589.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g50990-like [Cucumis sativus]
Length = 628
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 132/383 (34%), Positives = 213/383 (55%), Gaps = 14/383 (3%)
Query: 18 SILHILKSCT--HFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFD 74
S+ +L++C H N+ TVI H+ I+K G+ ++ + SL+ Y V +L D
Sbjct: 126 SLYRVLEACRLFHMNSKTVIE-THARIIKFGYGNYPTLIASLVSTYQRVGCLNRVHQLLD 184
Query: 75 ELPER--NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGL 132
L + + V N +I + K G A+ F +MP R+V +W+++I + YD
Sbjct: 185 ILCSKQLDLVAMNLLIGNFMKIGECKFAKKVFYKMPFRDVVTWNSIIGGCVKNARYDEAF 244
Query: 133 KLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILV 192
+ FR+M+++ + PD T ++L+ C+ LG+ H + + + ELN + L+
Sbjct: 245 RFFRQMLTS-NIQPDGFTFASILNACAQLGAPS--NTHWVHAQMTQKKIELNSLLTCALI 301
Query: 193 DMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEM 252
D Y+KCG ++ A +F + + W +I G A G + DALSLF M+ V P+ +
Sbjct: 302 DAYSKCGSIQIAKEIFSNIPHSDTSVWNVMIKGLAIHGLAMDALSLFLRMEHESVLPDAI 361
Query: 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312
TF GVLTAC H L+D GR+YF+++ Y ++P+++HYG MVDL+ +AGFLEEAY +I T
Sbjct: 362 TFLGVLTACNHGCLIDHGRRYFELMKSHYSIQPQLEHYGVMVDLYSRAGFLEEAYSLIVT 421
Query: 313 MRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWE 372
M +EP+V+ W + L+ C+ +K +AE I + G + L+ ++Y +W+
Sbjct: 422 MPIEPDVVTWRTLLSGCRIYKNHKLAEVAIANM-----SQRKSGDYVLLSNIYCSLNRWK 476
Query: 373 GAERVRKLMLNQNVRKARGSSVI 395
AE VRK+M VRK RG S I
Sbjct: 477 EAETVRKMMKINRVRKKRGKSWI 499
>gi|297811673|ref|XP_002873720.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319557|gb|EFH49979.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 623
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 134/403 (33%), Positives = 226/403 (56%), Gaps = 14/403 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
M+LF +M R+ V D S++ + C +L H +K+GF++ V V +L+
Sbjct: 96 MKLFVEMRRKRVEIDHVSLVCLFGVCAKLEDLRFGEQGHGVAVKMGFLTSVKVCNALMDM 155
Query: 61 YVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y F +++F L E++ V+W ++ K + R+ F+ MP RNV +W+ M+
Sbjct: 156 YGKCGFVSEVKRIFQALEEKSVVSWTVVLDTLVKWEGLKRGREVFDEMPERNVVAWTLMV 215
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A YL AG L+L EM+ G + +T+ ++LS C+ G+ L++G+ H + +K
Sbjct: 216 AGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGN--LVIGRWVHVYALKK 273
Query: 180 EWELNEQ-------IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
+ E+ + T LVDMYAKCG + ++ VF LM +RNV++W AL G A G
Sbjct: 274 AMMMGEEETYDGVMVGTALVDMYAKCGNIDSSIKVFRLMRKRNVVTWNALFSGLAMHGKG 333
Query: 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC 292
+ +F M VKP+++TFT +L+AC H G+VDEG + F + + Y LEP++ HY C
Sbjct: 334 RMVIDMFPEM-VREVKPDDLTFTALLSACSHLGMVDEGWRCFHSL-QFYGLEPKVDHYAC 391
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE 352
MVD+ G+AG +EEA ++R M + PN ++ GS L +C H + ++AER+ ++ ++M
Sbjct: 392 MVDILGRAGRIEEAEILMREMPVPPNEVVLGSLLGSCSVHGKLEIAERIKRELIQMSPGH 451
Query: 353 NDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ + L+ ++Y + + A+ +R + N+ +RK G S I
Sbjct: 452 TEYQI--LMSNMYVAEGRSDIADGLRGSLRNRGIRKIPGLSSI 492
>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 640
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 139/412 (33%), Positives = 223/412 (54%), Gaps = 20/412 (4%)
Query: 1 MQLFSQMHRQS-VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+ LF +M + + F+ +LK+C + +H LK GF +V ++L+
Sbjct: 105 ITLFCEMMSDEFIEPNRFTFPSVLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVR 164
Query: 60 EYVVTSFG-----------FARKLFDELPERN----AVTWNTMIKGYSKSGNVCEARDFF 104
YV+ R++ + R V WN MI GY + G+ AR F
Sbjct: 165 MYVICGLMKDACVLFYKNIIEREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLF 224
Query: 105 ERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV 164
++M R+V SW+ MI+ Y G + +++FREM E + P+ +T+ +VL S LGS
Sbjct: 225 DKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGS- 283
Query: 165 GLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALIC 224
L +G+ H + + +++ + + L+DMY+KCG ++ A+MVFE + NVI+W+A+I
Sbjct: 284 -LELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERLPRENVITWSAMIN 342
Query: 225 GSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLE 284
G A G + DA+ F M+ GV+P+++ + +LTAC H GLV+EGR+YF + LE
Sbjct: 343 GFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHAGLVEEGRRYFSQMVSVDGLE 402
Query: 285 PRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
PRI+HYGCMVDL G+ G L+EA E I M ++P+ +IW + L AC+ H+ +M +RV
Sbjct: 403 PRIEHYGCMVDLLGRLGLLDEAEEFILNMPIKPDDVIWKALLGACRMHRNVEMGKRVANI 462
Query: 345 ALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
+ MV +D G + + ++Y W +R M ++RK G S I
Sbjct: 463 LMDMVP--HDSGAYVALSNMYASQGNWSEVSEMRLRMKEMDIRKDPGCSWID 512
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/373 (24%), Positives = 160/373 (42%), Gaps = 89/373 (23%)
Query: 14 SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS------FG 67
S + S+ + +C +L+ IH + +K G I A +L + TS
Sbjct: 14 SPASSLFPQINTCRTIRDLSQIHAV---FIKSGQIRDTLAAAEILR-FCATSDLHHRDLD 69
Query: 68 FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
+A K+F+++P+RN +WNT+I+G+S+S A+IA
Sbjct: 70 YAHKIFNQMPQRNCFSWNTIIRGFSESDED------------------KALIA------- 104
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
+ LF EM+S+E + P++ T +VL C+ G + GK HG +K + +E +
Sbjct: 105 ----ITLFCEMMSDEFIEPNRFTFPSVLKACAKTGKIQ--QGKQIHGLALKYGFGGDEFV 158
Query: 188 ATILVDMYAKCGFLKYAL------------------------------------------ 205
+ LV MY CG +K A
Sbjct: 159 MSNLVRMYVICGLMKDACVLFYKNIIEREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCK 218
Query: 206 ---MVFELMEERNVISWTALICGSAHRGYSEDALSLF-EMMQATGVKPNEMTFTGVLTAC 261
M+F+ M +R+V+SW +I G + G+ +DA+ +F EM + ++PN +T VL A
Sbjct: 219 AARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAV 278
Query: 262 VHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVII 321
G ++ G ++ + E+ + ++D++ K G +E+A V + E NVI
Sbjct: 279 SRLGSLELG-EWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERLPRE-NVIT 336
Query: 322 WGSFLAACKEHKQ 334
W + + H Q
Sbjct: 337 WSAMINGFAIHGQ 349
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 87/200 (43%), Gaps = 33/200 (16%)
Query: 201 LKYALMVFELMEERNVISWTALICGSAHRGYSED-------ALSLF-EMMQATGVKPNEM 252
L YA +F M +RN SW +I RG+SE A++LF EMM ++PN
Sbjct: 68 LDYAHKIFNQMPQRNCFSWNTII-----RGFSESDEDKALIAITLFCEMMSDEFIEPNRF 122
Query: 253 TFTGVLTACVHTGLVDEGRKYFKMI------DEEYDLEPRIQHY---GCMVD---LFGKA 300
TF VL AC TG + +G++ + +E+ + ++ Y G M D LF K
Sbjct: 123 TFPSVLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKN 182
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSF------LAACKEHKQ-FD-MAERVIKQALRMVKPE 352
E +I + + V++W L CK + FD M +R + M+
Sbjct: 183 IIEREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGY 242
Query: 353 NDGGVFTLICDLYTMNEKWE 372
+ G F +++ +K E
Sbjct: 243 SQNGFFKDAVEVFREMKKGE 262
>gi|7413540|emb|CAB86020.1| putative protein [Arabidopsis thaliana]
gi|9758453|dbj|BAB08982.1| selenium-binding protein-like [Arabidopsis thaliana]
Length = 864
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 133/395 (33%), Positives = 215/395 (54%), Gaps = 35/395 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F +M + F+I +L +C + LH +K ++YV T+LL
Sbjct: 139 LDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALL-- 196
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
Y+K G + +A FE M ++ +WS+M+A
Sbjct: 197 ----------------------------DLYAKCGMIKDAVQVFESMQDKSSVTWSSMVA 228
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y+ Y+ L L+R L +Q T+ +V+ CS+L + L+ GK H I K+
Sbjct: 229 GYVQNKNYEEALLLYRRA-QRMSLEQNQFTLSSVICACSNLAA--LIEGKQMHAVICKSG 285
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ N +A+ VDMYAKCG L+ + ++F ++E+N+ W +I G A ++ + LFE
Sbjct: 286 FGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFE 345
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
MQ G+ PNE+TF+ +L+ C HTGLV+EGR++FK++ Y L P + HY CMVD+ G+A
Sbjct: 346 KMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRA 405
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G L EAYE+I+++ +P IWGS LA+C+ +K ++AE V + L ++PEN G L
Sbjct: 406 GLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAE-VAAEKLFELEPENAGN-HVL 463
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y N++WE + RKL+ + +V+K RG S I
Sbjct: 464 LSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWI 498
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 131/257 (50%), Gaps = 5/257 (1%)
Query: 78 ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
E + N +I YSK G V AR F+ M R++ SW+ MI Y L +F E
Sbjct: 85 EGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLE 144
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
M NEG + TI +VLS C + L K H VK +LN + T L+D+YAK
Sbjct: 145 M-RNEGFKFSEFTISSVLSACG--VNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAK 201
Query: 198 CGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGV 257
CG +K A+ VFE M++++ ++W++++ G E+AL L+ Q ++ N+ T + V
Sbjct: 202 CGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSV 261
Query: 258 LTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEP 317
+ AC + + EG++ +I + + VD++ K G L E+Y + ++ E
Sbjct: 262 ICACSNLAALIEGKQMHAVICKS-GFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQ-EK 319
Query: 318 NVIIWGSFLAACKEHKQ 334
N+ +W + ++ +H +
Sbjct: 320 NLELWNTIISGFAKHAR 336
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 119/223 (53%), Gaps = 6/223 (2%)
Query: 154 VLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE 213
+L C+ G+V + K+ HG I++ + E + + +L++ Y+KCGF++ A VF+ M E
Sbjct: 59 ILQLCARNGAV--MEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLE 116
Query: 214 RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC-VHTGLVDEGRK 272
R+++SW +I +AL +F M+ G K +E T + VL+AC V+ ++ +
Sbjct: 117 RSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKL 176
Query: 273 YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
+ + DL + ++DL+ K G +++A +V +M+ + + + W S +A ++
Sbjct: 177 HCLSVKTCIDLNLYVG--TALLDLYAKCGMIKDAVQVFESMQ-DKSSVTWSSMVAGYVQN 233
Query: 333 KQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAE 375
K ++ A + ++A RM +N + ++IC + EG +
Sbjct: 234 KNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQ 276
>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 679
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 125/395 (31%), Positives = 218/395 (55%), Gaps = 35/395 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+++ +M + D+F++ +L + + ++ +H ++++ G S VY+ +SL
Sbjct: 191 LRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSL--- 247
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ Y+KS + ++ F + R+ SW++++A
Sbjct: 248 ---------------------------VDMYAKSARIEDSERVFSHLYRRDSISWNSLVA 280
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y+ G Y+ L+LFR+M+S + + P + +V+ C+HL + L +GK HG++++
Sbjct: 281 GYVQNGRYNEALRLFRQMVSAK-VRPGAVAFSSVIPACAHLAT--LHLGKQLHGYVLRGG 337
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ N IA+ LVDMY+KCG ++ A +F+ M + +SWTA+I G A G+ +A+SLFE
Sbjct: 338 FGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFE 397
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ GVKPN++ F VLTAC H GLVDE YF + + Y L ++HY + DL G+A
Sbjct: 398 EMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRA 457
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G LEEAY+ I MR+EP +W + L++C HK ++AE+V ++ + EN G + L
Sbjct: 458 GKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIF-TIDSEN-MGAYVL 515
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+C++Y N +W+ ++R + + +RK S I
Sbjct: 516 MCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWI 550
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 160/356 (44%), Gaps = 44/356 (12%)
Query: 22 ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPERNA 81
+LKSCT +L +H I++LG +Y
Sbjct: 111 VLKSCTMMMDLRFGESVHGFIVRLGMDCDLY----------------------------- 141
Query: 82 VTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISN 141
T N ++ YSK + R FE MP ++V S++ +IA Y +G Y+ L++ REM ++
Sbjct: 142 -TGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTS 200
Query: 142 EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFL 201
+ L PD T+ +VL S V +L GK HG++++ + + I + LVDMYAK +
Sbjct: 201 D-LKPDAFTLSSVLPIFSEY--VDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARI 257
Query: 202 KYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261
+ + VF + R+ ISW +L+ G G +AL LF M + V+P + F+ V+ AC
Sbjct: 258 EDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPAC 317
Query: 262 VHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNV-- 319
H + G++ + I +VD++ K G ++ A ++ M L V
Sbjct: 318 AHLATLHLGKQLHGYVLRG-GFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSW 376
Query: 320 --IIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG--GVFTLICDLYTMNEKW 371
II G L H+ + E + +Q VKP V T + ++E W
Sbjct: 377 TAIIMGHALHG-HGHEAVSLFEEMKRQG---VKPNQVAFVAVLTACSHVGLVDEAW 428
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 124/254 (48%), Gaps = 6/254 (2%)
Query: 99 EARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGC 158
EA F+ + V +W ++I + + + L F EM ++ G PD +VL C
Sbjct: 57 EALLVFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRAS-GRCPDHNVFPSVLKSC 115
Query: 159 SHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVIS 218
+ + + L G+S HGFIV+ + + L++MY+K + VFELM ++V+S
Sbjct: 116 TMM--MDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVS 173
Query: 219 WTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMID 278
+ +I G A G EDAL + M + +KP+ T + VL V +G++ +
Sbjct: 174 YNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVI 233
Query: 279 EEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
+ ++ + +VD++ K+ +E++ V + + I W S +A ++ +++ A
Sbjct: 234 RK-GIDSDVYIGSSLVDMYAKSARIEDSERVFSHL-YRRDSISWNSLVAGYVQNGRYNEA 291
Query: 339 ERVIKQALRM-VKP 351
R+ +Q + V+P
Sbjct: 292 LRLFRQMVSAKVRP 305
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 109/246 (44%), Gaps = 43/246 (17%)
Query: 169 GKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAH 228
K H ++ + L+ A+I++ +Y L AL+VF+ +E V++W ++I
Sbjct: 24 AKQLHAQFIRTQ-SLSHTSASIVISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCFTD 82
Query: 229 RGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC-----------VHTGLVDEG------- 270
+ AL+ F M+A+G P+ F VL +C VH +V G
Sbjct: 83 QSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYT 142
Query: 271 -----RKYFKM-----IDEEYDLEPR--IQHYGCMVDLFGKAGFLEEAYEVIRTM---RL 315
Y K+ + + ++L PR + Y ++ + ++G E+A ++R M L
Sbjct: 143 GNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDL 202
Query: 316 EPNVIIWGSFLAACKEH----KQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKW 371
+P+ S L E+ K ++ VI++ + ++D + + + D+Y + +
Sbjct: 203 KPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGI-----DSDVYIGSSLVDMYAKSARI 257
Query: 372 EGAERV 377
E +ERV
Sbjct: 258 EDSERV 263
>gi|242054925|ref|XP_002456608.1| hypothetical protein SORBIDRAFT_03g039300 [Sorghum bicolor]
gi|241928583|gb|EES01728.1| hypothetical protein SORBIDRAFT_03g039300 [Sorghum bicolor]
Length = 458
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 134/396 (33%), Positives = 216/396 (54%), Gaps = 6/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LFSQ+ V + F+ +L+S T LH+ KLG S+V+V ++LL
Sbjct: 26 LALFSQVLADGVAPNEFTFGTVLRSATALRAPRAGVQLHACAAKLGLCSNVFVGSALLDH 85
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + + A + D+ E N V++ +I G K+G EA F RMP RNV SW+AMI
Sbjct: 86 YAKMGAMREAHGVLDDTREPNVVSYTALIAGLLKNGMFDEADRLFRRMPERNVVSWNAMI 145
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
AG + + LF EM EG+TP++ T VL+ ++ G++G+ G+S H +K
Sbjct: 146 GGCSQAGLSEEAVNLFLEMC-REGVTPNESTFPCVLTSVANAGALGV--GRSVHASAIKF 202
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+L+ I LV YA+CG L+ +++ F+ M +NV+SW ALICG A G E+AL +
Sbjct: 203 LGKLDVYIGNSLVSFYARCGSLEDSVLAFKKMNRKNVVSWNALICGYAQNGKGEEALDAY 262
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MM+ATG+KP+ +T G+L C H GLVDEG FK + E + +HY C+VDL +
Sbjct: 263 RMMRATGLKPDNVTLLGLLFGCNHAGLVDEGYALFKTTEMEQPGILKPEHYACVVDLLSR 322
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
A + A + + EP + W + + C+ H ++AE V K+ + + P+ D +
Sbjct: 323 AKRFDNAKRFLEELPFEPGIGFWKALVGGCQIHWNRELAESVAKR-IHALDPK-DTSSYI 380
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y+ + W+ +R+ + + +++ G S I
Sbjct: 381 LLSNVYSASGSWQSVSMIRREIKEKGLKRITGCSWI 416
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 2/134 (1%)
Query: 211 MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
M R+V+S TA I RG DAL+LF + A GV PNE TF VL + G
Sbjct: 1 MPHRDVVSATAAIGALTRRGRHRDALALFSQVLADGVAPNEFTFGTVLRSATALRAPRAG 60
Query: 271 RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330
+ + L + ++D + K G + EA+ V+ R EPNV+ + + +A
Sbjct: 61 VQ-LHACAAKLGLCSNVFVGSALLDHYAKMGAMREAHGVLDDTR-EPNVVSYTALIAGLL 118
Query: 331 EHKQFDMAERVIKQ 344
++ FD A+R+ ++
Sbjct: 119 KNGMFDEADRLFRR 132
>gi|242069679|ref|XP_002450116.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
gi|241935959|gb|EES09104.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
Length = 597
Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 131/382 (34%), Positives = 210/382 (54%), Gaps = 35/382 (9%)
Query: 12 VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARK 71
V DSF+ + +L +C +L + + K G +V+VAT+ + YV
Sbjct: 173 VRPDSFTAVRVLTACARVADLVTGEEVWTAAEKEGIAGNVFVATAAVDLYV--------- 223
Query: 72 LFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPG 131
K G + +AR F++M ++V +W AM+ Y + G
Sbjct: 224 ---------------------KCGEMDKARGVFDKMKNKDVVAWGAMVGGYASNGHPREA 262
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
L+LF M EG+ PD T+ LS C+ LG++ L G+ G + +E N + T L
Sbjct: 263 LELFFAM-QVEGMRPDCYTVAGALSACTRLGALDL--GRRVVGMLQWDEVLGNPVLGTAL 319
Query: 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE 251
+DMYAKCG A MVF+ M R++I W A+I G G+ + A +L M+ +G+ N+
Sbjct: 320 IDMYAKCGSTGEAWMVFQKMRNRDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGMTLND 379
Query: 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR 311
TF G+L +C HTGLV +GR+YF+ + + Y + PRI+HYG MVDL +AG L+EA+++I+
Sbjct: 380 NTFIGLLCSCTHTGLVKDGRRYFRNMTQLYHIRPRIEHYGIMVDLLSRAGLLQEAHQLIQ 439
Query: 312 TMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKW 371
M +E N ++WG+ L CK H+ D+AE V+KQ +++ +P N G + ++ ++Y+ + +W
Sbjct: 440 DMPMEANAVVWGALLGGCKIHRNADLAEHVLKQLIQL-EPWNSGN-YVVLSNIYSNSGRW 497
Query: 372 EGAERVRKLMLNQNVRKARGSS 393
E A ++R M + V K SS
Sbjct: 498 EDAAKLRLEMKAKGVEKVPASS 519
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/342 (28%), Positives = 165/342 (48%), Gaps = 29/342 (8%)
Query: 38 LHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFD-------------ELPER-NAVT 83
LH H+L+ F SH+ + L + + S A +L D +LP N
Sbjct: 58 LHLHVLR--FHSHLPNPSHLTFPFAIKS---ASRLPDPLTAGAQLHARSLKLPSHSNPHV 112
Query: 84 WNTMIKGYSKSGNVCEARDFFE--RMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISN 141
+++ Y++ G + +A+ F+ R P V SW+A+I AY++AG + + R ++
Sbjct: 113 LTSLLNLYARCGRLHDAQKAFDEMRQPPSTV-SWTALITAYMDAGRGLEAIGVARSAFAS 171
Query: 142 EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFL 201
G+ PD T VL+ C+ + L+ G+ K N +AT VD+Y KCG +
Sbjct: 172 -GVRPDSFTAVRVLTACARVAD--LVTGEEVWTAAEKEGIAGNVFVATAAVDLYVKCGEM 228
Query: 202 KYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261
A VF+ M+ ++V++W A++ G A G+ +AL LF MQ G++P+ T G L+AC
Sbjct: 229 DKARGVFDKMKNKDVVAWGAMVGGYASNGHPREALELFFAMQVEGMRPDCYTVAGALSAC 288
Query: 262 VHTGLVDEGRKYFKMID-EEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVI 320
G +D GR+ M+ +E P + ++D++ K G EA+ V + MR ++I
Sbjct: 289 TRLGALDLGRRVVGMLQWDEVLGNPVLG--TALIDMYAKCGSTGEAWMVFQKMR-NRDII 345
Query: 321 IWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362
+W + + +A ++ Q + ND L+C
Sbjct: 346 VWNAMILGLGMTGHEKIAFALVGQMKKSGMTLNDNTFIGLLC 387
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 91/231 (39%), Gaps = 43/231 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF M + + D +++ L +CT L + + + + + + T+L+
Sbjct: 263 LELFFAMQVEGMRPDCYTVAGALSACTRLGALDLGRRVVGMLQWDEVLGNPVLGTALIDM 322
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y S G A +F ++ R+ + WN MI G +G+ E++ V
Sbjct: 323 YAKCGSTGEAWMVFQKMRNRDIIVWNAMILGLGMTGH--------EKIAFALVGQ----- 369
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI--V 177
+ G+T + T +L C+H G V K + +
Sbjct: 370 -------------------MKKSGMTLNDNTFIGLLCSCTHTGLV-----KDGRRYFRNM 405
Query: 178 KNEWELNEQIA--TILVDMYAKCGFLKYALMVFELME-ERNVISWTALICG 225
+ + +I I+VD+ ++ G L+ A + + M E N + W AL+ G
Sbjct: 406 TQLYHIRPRIEHYGIMVDLLSRAGLLQEAHQLIQDMPMEANAVVWGALLGG 456
>gi|224031691|gb|ACN34921.1| unknown [Zea mays]
gi|414879789|tpg|DAA56920.1| TPA: tetratricopeptide-like helical [Zea mays]
Length = 460
Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 137/398 (34%), Positives = 218/398 (54%), Gaps = 8/398 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCT--HFNNLTVIHHLHSHILKLGFISHVYVATSLL 58
+ LFS++ V + F+ +L+S T V LH+ KLG S+V+V ++LL
Sbjct: 26 LALFSRVLADGVAPNEFTFGTVLRSATALRVRAPRVGVQLHACAAKLGLCSNVFVGSALL 85
Query: 59 HEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
Y + + A++ D+ E N V++ +I G K+G EA F RMP RNV SW+A
Sbjct: 86 DHYAKMGAMTEAQRALDDTREPNVVSYTALIAGLLKNGMFDEADRLFRRMPERNVVSWNA 145
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MI Y AG + + LF EM G++P++ T VL+ + G++G+ G+S H +
Sbjct: 146 MIGGYSQAGLGEEAVNLFLEMCRG-GVSPNESTFPCVLTSVASAGTLGV--GRSIHASAI 202
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
K +L+ I LV YA+CG L+ +++ F+ + +NV+SW ALICG A G E+AL
Sbjct: 203 KFLGKLDVYIGNSLVSFYARCGSLEDSVLAFKKINRKNVVSWNALICGYAQNGKGEEALD 262
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
+ MM+ATG+KP+ +T G+L C HTGLVDEG FK + E + +HY C+VDL
Sbjct: 263 AYRMMRATGLKPDNVTLLGLLFGCNHTGLVDEGYALFKTAEREQPGILKPEHYACVVDLL 322
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
+A +EA + + EP + W + L C+ H +AE V K+ +R + P+ D
Sbjct: 323 SRAKRFDEARRFLEELPFEPGIGFWKALLGGCQIHWNSKLAESVAKR-IRALDPK-DTSS 380
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ ++Y+ + W+ VR + + +++ G S I
Sbjct: 381 YILLSNVYSASGSWQSVSMVRWEIKEKGLKRITGCSWI 418
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 211 MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL-VDE 269
M R+VIS TA I G DAL+LF + A GV PNE TF VL + T L V
Sbjct: 1 MPHRDVISATAAIGALTRGGRHRDALALFSRVLADGVAPNEFTFGTVLRSA--TALRVRA 58
Query: 270 GRKYFKM--IDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
R ++ + L + ++D + K G + EA + R EPNV+ + + +A
Sbjct: 59 PRVGVQLHACAAKLGLCSNVFVGSALLDHYAKMGAMTEAQRALDDTR-EPNVVSYTALIA 117
Query: 328 ACKEHKQFDMAERVIKQ 344
++ FD A+R+ ++
Sbjct: 118 GLLKNGMFDEADRLFRR 134
>gi|224116552|ref|XP_002331925.1| predicted protein [Populus trichocarpa]
gi|222874597|gb|EEF11728.1| predicted protein [Populus trichocarpa]
Length = 530
Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 129/394 (32%), Positives = 222/394 (56%), Gaps = 5/394 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+FS++ + + DS S++ L +C +L +H I + ++ V +L+ Y
Sbjct: 89 VFSKLVNEGLRPDSHSVVGALSACGKKQDLLNGKLVHGMIFRFQLGANSIVGNALIDMYC 148
Query: 63 VTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
A+ +F ++ ++ +W +++ G+ + AR F+ MP RN +W+AMI
Sbjct: 149 RNGEIKIAQLVFKQMGIKDVSSWTSLLNGFVMCNGLESARRVFDEMPWRNDVAWTAMITG 208
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ G GL++FR+M + P +T AVLSGC+ LG+ G++ HG+I K
Sbjct: 209 YVRGGMPIRGLEMFRQMKAEGENQPTVITAVAVLSGCADLGAHD--HGQAVHGYISKVNL 266
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ ++ L+DMY+K G ++ A+ +F+ + +++V SWT +I + G AL +F
Sbjct: 267 DKGVTVSNALMDMYSKGGCVESAMKIFDRLVKKDVFSWTTMISAHSSHGKGNHALEVFYD 326
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M +GV PN++TF VL+ C H+GL+ E K F + + Y EP+I+HYGCMVDL +AG
Sbjct: 327 MLESGVIPNDVTFLLVLSGCSHSGLLVEANKLFNGMIQCYGFEPKIEHYGCMVDLLCRAG 386
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
LEEA E+I M ++P+ +IW S L+AC + +AE K+ + + +P +D GV+ L+
Sbjct: 387 LLEEAKELIDNMPMDPDAVIWRSLLSACMNQRNLGLAEIAGKKIIEL-EPHDD-GVYVLL 444
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y + + + A ++RK+M +Q V K S I
Sbjct: 445 SNIYHVANRMKDARKMRKMMGDQKVMKKPACSYI 478
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 134/300 (44%), Gaps = 37/300 (12%)
Query: 87 MIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
++ Y+K GN +A+ F + + +++++I YL+ +F +++ NEGL P
Sbjct: 42 LVNRYAKLGNPRDAQKVFGYIQDPDRVTYTSLINLYLSTQLPIKAFSVFSKLV-NEGLRP 100
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
D ++ LS C LL GK HG I + + N + L+DMY + G +K A +
Sbjct: 101 DSHSVVGALSACGK--KQDLLNGKLVHGMIFRFQLGANSIVGNALIDMYCRNGEIKIAQL 158
Query: 207 VFELMEERNVISWTALICG--------SAHRGYSE-----------------------DA 235
VF+ M ++V SWT+L+ G SA R + E
Sbjct: 159 VFKQMGIKDVSSWTSLLNGFVMCNGLESARRVFDEMPWRNDVAWTAMITGYVRGGMPIRG 218
Query: 236 LSLFEMMQATGV-KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
L +F M+A G +P +T VL+ C G D G+ I + +L+ + ++
Sbjct: 219 LEMFRQMKAEGENQPTVITAVAVLSGCADLGAHDHGQAVHGYI-SKVNLDKGVTVSNALM 277
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
D++ K G +E A ++ + ++ +V W + ++A H + + A V L ND
Sbjct: 278 DMYSKGGCVESAMKIFDRL-VKKDVFSWTTMISAHSSHGKGNHALEVFYDMLESGVIPND 336
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 2/162 (1%)
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
+ + +A LV+ YAK G + A VF +++ + +++T+LI A S+F +
Sbjct: 34 IEQPLACKLVNRYAKLGNPRDAQKVFGYIQDPDRVTYTSLINLYLSTQLPIKAFSVFSKL 93
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
G++P+ + G L+AC + G+ MI + L ++D++ + G
Sbjct: 94 VNEGLRPDSHSVVGALSACGKKQDLLNGKLVHGMI-FRFQLGANSIVGNALIDMYCRNGE 152
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
++ A V + M ++ +V W S L + A RV +
Sbjct: 153 IKIAQLVFKQMGIK-DVSSWTSLLNGFVMCNGLESARRVFDE 193
>gi|224118458|ref|XP_002331487.1| predicted protein [Populus trichocarpa]
gi|222873565|gb|EEF10696.1| predicted protein [Populus trichocarpa]
Length = 606
Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 141/435 (32%), Positives = 227/435 (52%), Gaps = 48/435 (11%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
F QM ++ V D S + LK+C F + +H + K+GF+ + V L+H Y
Sbjct: 137 FFCQMVQKGVEMDCRSFVFALKACEQFLGVLEGKSVHCVVWKMGFVYTLLVQNGLVHFYG 196
Query: 63 VTS-FGFARKLFDELPERNAVTWNTMIKGYSK---------------------------- 93
+ G AR +FDE+ ER+ V+W +MI GYSK
Sbjct: 197 LRGCLGLARLVFDEISERDVVSWTSMIDGYSKHKWCDEALKLFDSMLMYGVVEPNEVTMI 256
Query: 94 --------SGNVCEARDFFERMPLRNVAS----WSAMIAAYLNAGAYDPGLKLFREMISN 141
G++ + F E + RNV +A++ Y+ G D ++F M
Sbjct: 257 AVLSSCSQKGDLILGKTFLEYVKTRNVTRSLNLMNAILDMYVKCGCLDSAREIFDTM--G 314
Query: 142 EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW-ELNEQIATILVDMYAKCGF 200
P + T+ VL C LG L +G+ H V+ + E++ +A L+DMYAKCG
Sbjct: 315 AAFAPMENTLACVLPVCGQLGC--LDVGQWIHRNYVRMRYNEISVILANALIDMYAKCGV 372
Query: 201 LKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260
+ A VF M ERN++SW ++I A G+++ ALS+FE M + G KP+++T GVL+A
Sbjct: 373 IHEAAKVFNDMPERNLVSWNSMITAYASHGHAKQALSVFERMISGGFKPDDITLVGVLSA 432
Query: 261 CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVI 320
C H GLV EG++YF+ + +Y +EP+ +HY CM+DL G+ G LE+AYE+I M +EP+
Sbjct: 433 CSHGGLVAEGQEYFQNMKRKYGIEPKNEHYACMIDLLGRVGLLEDAYELITKMPMEPSAA 492
Query: 321 IWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKL 380
WG+ + AC+ H ++A+ + L + PE D G++ L+ ++ +W + R++
Sbjct: 493 AWGALVHACRMHGNVEVAKIAAPRLLEL-DPE-DSGIYVLLANICASGRRWGDVKMARRM 550
Query: 381 MLNQNVRKARGSSVI 395
M + V+K G S++
Sbjct: 551 MRERRVKKIPGRSIV 565
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/351 (24%), Positives = 150/351 (42%), Gaps = 38/351 (10%)
Query: 19 ILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPE 78
IL ++SCT ++ + + +H+ K ISH + + +L
Sbjct: 53 ILLAMESCT---SMLQLKQIQAHMTKTALISHTFPVSRVL-------------------- 89
Query: 79 RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM 138
S SG++ A F ++ N W+ MI Y A G F +M
Sbjct: 90 --------AFCALSDSGDINHAHLLFSQLQNPNTYIWNTMIRGYSKAKMGQTGFLFFCQM 141
Query: 139 ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198
+ +G+ D + L C +G+L GKS H + K + + LV Y
Sbjct: 142 V-QKGVEMDCRSFVFALKACEQF--LGVLEGKSVHCVVWKMGFVYTLLVQNGLVHFYGLR 198
Query: 199 GFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG-VKPNEMTFTGV 257
G L A +VF+ + ER+V+SWT++I G + + ++AL LF+ M G V+PNE+T V
Sbjct: 199 GCLGLARLVFDEISERDVVSWTSMIDGYSKHKWCDEALKLFDSMLMYGVVEPNEVTMIAV 258
Query: 258 LTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--RL 315
L++C G + G+ + + + ++ + ++D++ K G L+ A E+ TM
Sbjct: 259 LSSCSQKGDLILGKTFLEYVKTR-NVTRSLNLMNAILDMYVKCGCLDSAREIFDTMGAAF 317
Query: 316 EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366
P L C + D+ + + + +RM E + + D+Y
Sbjct: 318 APMENTLACVLPVCGQLGCLDVGQWIHRNYVRMRYNEISVILANALIDMYA 368
>gi|147767785|emb|CAN66974.1| hypothetical protein VITISV_022076 [Vitis vinifera]
Length = 967
Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 126/375 (33%), Positives = 207/375 (55%), Gaps = 34/375 (9%)
Query: 22 ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFDELPERN 80
++ +C ++ LH+H +K GF V+ T+L+ Y + ARK FDE+ R+
Sbjct: 573 LISACASLSSHQQGRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVRD 632
Query: 81 AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMIS 140
TWN+MI GY++ G++ A + F MP RNV SW+AMI+ Y G Y L +F M
Sbjct: 633 VPTWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEE 692
Query: 141 NEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGF 200
+ P+++T+ +VL C++LG+ L +G+ + N + N ++ L++MYA+CG
Sbjct: 693 ETEMRPNEVTLASVLPACANLGA--LEVGERIEVYARGNGYFKNLYVSNALLEMYARCGR 750
Query: 201 LKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260
+ A VFE ++ R G P+++TF GVL A
Sbjct: 751 IDKAWGVFEEIDGRR-----------------------------EGAAPDDVTFVGVLLA 781
Query: 261 CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVI 320
C H G+V EG+ +F+ ++ ++ + P+++HYGCMVDL G+AG L EA+++I M +EP+ +
Sbjct: 782 CTHGGMVVEGQHFFESMERDFSIAPKLEHYGCMVDLLGRAGELREAHDLILRMPMEPDSV 841
Query: 321 IWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKL 380
+WG+ L AC H ++AE+ AL ++P N G + ++ ++Y +W+G R+RKL
Sbjct: 842 VWGTLLGACSFHGHVELAEKAAG-ALFELEPSNPGN-YVILSNIYATAGRWDGVARLRKL 899
Query: 381 MLNQNVRKARGSSVI 395
M + KA G S I
Sbjct: 900 MKGGKITKAAGYSFI 914
>gi|357124715|ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Brachypodium distachyon]
Length = 599
Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 127/353 (35%), Positives = 206/353 (58%), Gaps = 9/353 (2%)
Query: 47 FISHVYVATSLLHEYVVTSFG-FARKLFDELP---ERNAVTWNTMIKGYSKSGNVCEARD 102
F SH + +LL Y+ A +LF + + V+W TM+ G + G V +AR
Sbjct: 123 FHSHAHSFNALLAAYLANGRADLASRLFGSCSSPGDLDVVSWTTMVGGLCRLGLVDDARK 182
Query: 103 FFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLG 162
F+ MP RN+ SW+AMI+ Y+ AG + L++F +M + G+ + + + C+ G
Sbjct: 183 LFDGMPERNLISWNAMISGYVKAGRFLDALEVFDQMRA-LGIEGNGFVAASAVVACT--G 239
Query: 163 SVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTAL 222
+ L G+ H ++ ++ ++E++AT +VDMY KCG ++ A VF+++ + + SW +
Sbjct: 240 AGVLARGREVHRWVEQSGITMDEKLATAVVDMYCKCGSVEEAWHVFKVLPTKGLTSWNCM 299
Query: 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD 282
I G A G +DA+ LF M+ V P+++T VLTAC HTG+V +G YF I + Y
Sbjct: 300 IGGLAVHGRCKDAIELFHEMEREDVAPDDVTLVNVLTACAHTGMVSDGHNYFNYIVQRYG 359
Query: 283 LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVI 342
+EP+++HYGCMVDLFG+AG L+EA +VI M +EP++ + G+ ACK H+ D+ E +
Sbjct: 360 IEPKMEHYGCMVDLFGRAGLLDEAKKVIDDMPMEPDIGVLGALFGACKIHRDLDLGEAIG 419
Query: 343 KQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ + + P+N G + L+ +L +W +VR+LM +NV K G SVI
Sbjct: 420 WRVIEL-DPQN-SGRYVLLANLLASAGQWVDVAKVRRLMDERNVSKEAGRSVI 470
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 84/213 (39%), Gaps = 36/213 (16%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+++F QM + + F + +CT L +H + + G +AT+++
Sbjct: 212 LEVFDQMRALGIEGNGFVAASAVVACTGAGVLARGREVHRWVEQSGITMDEKLATAVVDM 271
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y S A +F LP + +WN MI G + G +A
Sbjct: 272 YCKCGSVEEAWHVFKVLPTKGLTSWNCMIGGLAVHGRCKDA------------------- 312
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
++LF EM E + PD +T+ VL+ C+H G V G + +IV+
Sbjct: 313 ------------IELFHEM-EREDVAPDDVTLVNVLTACAHTGMVS--DGHNYFNYIVQR 357
Query: 180 -EWELNEQIATILVDMYAKCGFLKYALMVFELM 211
E + +VD++ + G L A V + M
Sbjct: 358 YGIEPKMEHYGCMVDLFGRAGLLDEAKKVIDDM 390
>gi|147833409|emb|CAN68525.1| hypothetical protein VITISV_018083 [Vitis vinifera]
Length = 1796
Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 127/389 (32%), Positives = 220/389 (56%), Gaps = 6/389 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF+ M R+ V D + +L +C+ + +H+H+ K+GF + + + ++L+
Sbjct: 290 LELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDM 349
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A KLF +L + + N+MI YS G + +AR F+ MP +++ SW++MI
Sbjct: 350 YSKCRRPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMI 409
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ L LF EM + GL D+ ++ V+S C+ + S+ L A I+
Sbjct: 410 VGFSQNACPIEALDLFCEM-NKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIG- 467
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
E ++ I+T LVD Y KCG +++ +F+ M + + + W +++ G A G+ +AL++F
Sbjct: 468 -LEFDQIISTSLVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVF 526
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+ M++ GV+P ++TF GVL+AC H GLV+EGRK+F + +Y + P I+HY CMVDL+ +
Sbjct: 527 DQMRSVGVQPTDITFVGVLSACDHCGLVEEGRKWFYAMKLDYHINPGIEHYSCMVDLYAR 586
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG LE+A +I M L+ + +W S L C H + ++V K+ + + PEN G +
Sbjct: 587 AGLLEDAMNLIEQMPLKADTSMWSSVLRGCVAHGNNILGKKVAKRIIDL-DPENSGA-YV 644
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRK 388
+ +Y E W + +VRKLM ++ + K
Sbjct: 645 QLSGIYATFEDWGRSAQVRKLMYDKKIPK 673
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 115/395 (29%), Positives = 194/395 (49%), Gaps = 35/395 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++ F M D F++ ++ C++ +L + + +++GF+S
Sbjct: 926 LRQFVLMRSVGYSPDQFTVSTVITVCSNLQDLEKGEQIFALCIRVGFLS----------- 974
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
N++ + I +SK + ++ FE + + +AMI+
Sbjct: 975 -------------------NSIVSSASIDLFSKCNRLEDSVRVFEEIYQWDSVLCNAMIS 1015
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
+Y G + L+LF + E L P + T+ VLS S L V G H +VK+
Sbjct: 1016 SYAWHGFGENALQLFV-LTLRENLRPTEFTLSIVLSAVSILLPVD--QGSQIHSLVVKSG 1072
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
E + +A+ LV+MYAK G + A+ F + R++ISW +I G A+ G AL +F+
Sbjct: 1073 LESDVIVASSLVEMYAKFGLIDSAMKTFAKIGARDLISWNTMIMGLAYNGRVSKALEIFK 1132
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
+ G P+E+T GVL AC GLVDEG F +++EY + P I+HY C+VD+ +
Sbjct: 1133 ELLIGGPPPDEITLAGVLLACNVGGLVDEGLSIFSSMEKEYGVIPAIEHYACIVDMMSRG 1192
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G L+EA +++ M EP+ +IWGS L AC+ + ERV ++ + + +P++ + +
Sbjct: 1193 GKLKEAMDIVELMPHEPSGLIWGSLLCACEIYGDLRFTERVAERVMEL-EPQS-SLPYLV 1250
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ Y M +WE RV + M + VRK G S I
Sbjct: 1251 LAQAYEMRGRWESLVRVXRAMKEKGVRKVIGCSWI 1285
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 139/270 (51%), Gaps = 9/270 (3%)
Query: 42 ILKLGFISHVYVATSLLHEYVVTSFGF-ARKLFDELPERNAVTWNTMIKGYSKSGNVCEA 100
++K+GF +H ++ L Y G + ++F+++ ++N ++WN +K + + G + A
Sbjct: 736 LIKVGFNTHTFLGNRCLDLYSQLGTGNDSLRVFEDIIDKNLISWNIFLKAFVRFGELERA 795
Query: 101 RDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSH 160
RD F+ MP R+V SW+ MI+ Y++ G +D + F EM G+ P T +LS S
Sbjct: 796 RDVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSEM-QKAGIRPSGFTYSTLLSFVS- 853
Query: 161 LGSVGLLMGKSAHGFIVKNEWEL-NEQIATILVDMYAKCGFLKYALMVFELMEERNVISW 219
GK H +++N +L N + L+ MY K G + YA VF MEE ++ISW
Sbjct: 854 ----SACRGKQIHASMIRNGVDLSNVVVGNSLIGMYGKFGVVDYAFGVFITMEELDIISW 909
Query: 220 TALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE 279
+LI GY AL F +M++ G P++ T + V+T C + +++G + F +
Sbjct: 910 NSLIWSCGKSGYQNLALRQFVLMRSVGYSPDQFTVSTVITVCSNLQDLEKGEQIFALCIR 969
Query: 280 EYDLEPRIQHYGCMVDLFGKAGFLEEAYEV 309
L I +DLF K LE++ V
Sbjct: 970 VGFLSNSIVS-SASIDLFSKCNRLEDSVRV 998
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 113/439 (25%), Positives = 179/439 (40%), Gaps = 103/439 (23%)
Query: 12 VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVY-VATSLLHEYV-VTSFGFA 69
V D S+ L SC ++ ++ LH LK G + V + LL Y S A
Sbjct: 2 VDLDLHSLARQLGSCNNYGSIYRGRXLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREA 61
Query: 70 RKLFDELPERNAVTWNTMI-------------------------------KGYSKSGNVC 98
++LF+E+P+RN +WNTMI G++K GN+
Sbjct: 62 QQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLE 121
Query: 99 EARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISN--EGLTPDQMTIGAVLS 156
AR F MP +N +W++MI Y G + LF+++ N E D + V+
Sbjct: 122 VARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVG 181
Query: 157 GCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNV 216
C++LG+ L GK H IV +E E + + + LV++Y KCG + A V LM+E +
Sbjct: 182 ACTNLGA--LDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDA 239
Query: 217 ISWTALICGSAHRGYSED-------------------------------ALSLFEMMQAT 245
S +ALI G A G D AL LF M+
Sbjct: 240 FSLSALISGYASCGRMNDARRIFCLKSNXCVVLWNSMISGYVANNEALEALELFNNMRRK 299
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI-------------------------DEE 280
GV+ + TF VL+AC G++D+G + + D+
Sbjct: 300 GVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDA 359
Query: 281 YDLEPRIQHY-----GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH--- 332
L +Q Y M+ ++ G +++A ++ TM ++I W S + ++
Sbjct: 360 CKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMP-SKSLISWNSMIVGFSQNACP 418
Query: 333 -KQFDMAERVIKQALRMVK 350
+ D+ + K LRM K
Sbjct: 419 IEALDLFCEMNKLGLRMDK 437
>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 605
Score = 241 bits (614), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 135/394 (34%), Positives = 218/394 (55%), Gaps = 35/394 (8%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
LF ++ + D+++ +LK+C L LH +KLG +VYV
Sbjct: 117 NLFVEILEDDLLPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGVDDNVYVCP------ 170
Query: 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
T+I Y++ +V AR F+R+ V ++AMI
Sbjct: 171 ------------------------TLINMYTECEDVDAARCVFDRIVEPCVVCYNAMITG 206
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y + L LFREM + L P+++T+ +VLS C+ LGS+ L GK H + K+ +
Sbjct: 207 YARRNRPNEALSLFREM-QGKNLKPNEITLLSVLSSCALLGSLDL--GKWIHEYAKKHGF 263
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
++ T L+DM+AKCG L A+ +FE M ++ +W+A+I A+ G +E+++ +FE
Sbjct: 264 CKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMFER 323
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M++ V+P+E+TF G+L AC HTGLV+EGR+YF + E+ + P I+HYG MVDL G+AG
Sbjct: 324 MRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLLGRAG 383
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
LE+AYE I + + P ++W LAAC H ++AE+V ++ L + ++ GG + ++
Sbjct: 384 HLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLELAEKVSERILEL--DDSHGGDYVIL 441
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+LY N+KWE + +RK+M ++ K G S I
Sbjct: 442 SNLYARNKKWEAVDSLRKVMKDRKAVKVPGCSSI 475
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 126/271 (46%), Gaps = 36/271 (13%)
Query: 64 TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL 123
+S +AR LFD + E + V +N++ +GYS+S N E
Sbjct: 79 SSMSYARHLFDAMSEPDIVIFNSIARGYSRSTNPLEV----------------------- 115
Query: 124 NAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWEL 183
LF E++ ++ L PD T ++L C+ + L G+ H +K +
Sbjct: 116 --------FNLFVEILEDD-LLPDNYTFPSLLKACA--VAKALEEGRQLHCLSMKLGVDD 164
Query: 184 NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQ 243
N + L++MY +C + A VF+ + E V+ + A+I G A R +ALSLF MQ
Sbjct: 165 NVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQ 224
Query: 244 ATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFL 303
+KPNE+T VL++C G +D G K+ +++ ++ ++D+F K G L
Sbjct: 225 GKNLKPNEITLLSVLSSCALLGSLDLG-KWIHEYAKKHGFCKYVKVNTALIDMFAKCGSL 283
Query: 304 EEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
++A + MR + + W + + A H Q
Sbjct: 284 DDAVSIFENMRYK-DTQAWSAMIVAYANHGQ 313
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 31/164 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF +M +++ + ++L +L SC +L + +H + K GF +V V T+L
Sbjct: 217 LSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKYVKVNTAL--- 273
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
I ++K G++ +A FE M ++ +WSAMI
Sbjct: 274 ---------------------------IDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIV 306
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV 164
AY N G + + +F M S E + PD++T +L+ CSH G V
Sbjct: 307 AYANHGQAENSMLMFERMRS-ENVQPDEITFLGLLNACSHTGLV 349
>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 620
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 132/393 (33%), Positives = 226/393 (57%), Gaps = 36/393 (9%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ +M + D+F++ +LK+C+ L+ I S +HEYV
Sbjct: 135 LYHKMLDYGLRPDNFTLPFVLKACS---ALSAIGEGRS-----------------IHEYV 174
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
+ S G+ R LF +I Y+K G V +A F+++ +R+ W++M+AAY
Sbjct: 175 IKS-GWERDLF---------VGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAY 224
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
G D + L REM +N G+ P + T+ V+S + + L G+ HGF ++ ++
Sbjct: 225 AQNGHPDESISLCREMAAN-GVRPTEATLVTVISSSADVAC--LPYGREIHGFGWRHGFQ 281
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
N+++ T L+DMYAKCG +K AL +FE + E+ V+SW A+I G A G + AL LF+ M
Sbjct: 282 SNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFDKM 341
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
+ +P+ +TF GVL AC L+DEGR + ++ +Y + P +QHY CM+DL G G
Sbjct: 342 RKED-RPDHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQ 400
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362
L+EAY++IR M ++P+ +WG+ L +CK H ++AE +++ + + +P+ D G + ++
Sbjct: 401 LDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVELAELALEKLIEL-EPD-DSGNYVILA 458
Query: 363 DLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y + KWEG E++R++M+++ ++K S I
Sbjct: 459 NMYAQSGKWEGVEKLRQVMIDKRIKKNIACSWI 491
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 153/321 (47%), Gaps = 37/321 (11%)
Query: 13 PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT-SFGFARK 71
P+ + +L+SC L LH+ LG + +AT L+H Y V+ S AR
Sbjct: 44 PTTHYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARN 103
Query: 72 LFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPG 131
LFD++P++N WN +I+GY +W+ G +D
Sbjct: 104 LFDKIPKQNLFLWNVLIRGY----------------------AWN---------GPHDNA 132
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
+ L+ +M+ + GL PD T+ VL CS L ++G G+S H +++K+ WE + + L
Sbjct: 133 IILYHKML-DYGLRPDNFTLPFVLKACSALSAIG--EGRSIHEYVIKSGWERDLFVGAAL 189
Query: 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE 251
+DMYAKCG + A VF+ + R+ + W +++ A G+ ++++SL M A GV+P E
Sbjct: 190 IDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTE 249
Query: 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR 311
T V+++ + GR+ + + + ++D++ K G ++ A +
Sbjct: 250 ATLVTVISSSADVACLPYGRE-IHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFE 308
Query: 312 TMRLEPNVIIWGSFLAACKEH 332
+R E V+ W + + H
Sbjct: 309 RLR-EKRVVSWNAIITGYAMH 328
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 94/200 (47%), Gaps = 5/200 (2%)
Query: 153 AVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME 212
++L C + S L GK H N+ +AT LV +YA L A +F+ +
Sbjct: 52 SLLQSC--IDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIP 109
Query: 213 ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK 272
++N+ W LI G A G ++A+ L+ M G++P+ T VL AC + EGR
Sbjct: 110 KQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRS 169
Query: 273 YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
+ + + E + ++D++ K G + +A V + + + ++W S LAA ++
Sbjct: 170 IHEYVIKS-GWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVR-DAVLWNSMLAAYAQN 227
Query: 333 KQFDMAERVIKQ-ALRMVKP 351
D + + ++ A V+P
Sbjct: 228 GHPDESISLCREMAANGVRP 247
>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330-like [Cucumis
sativus]
Length = 712
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 131/395 (33%), Positives = 214/395 (54%), Gaps = 35/395 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+++ +M ++ DSF++ +L +++ +H ++ G + +YVA+SL
Sbjct: 224 LRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSL--- 280
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
I Y+K V ++ F + R+ SW+++IA
Sbjct: 281 ---------------------------IDMYAKCTRVADSCRVFTLLTERDGISWNSIIA 313
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
+ G +D GL+ FR+M+ + + P + +++ C+HL + L +GK HG+I +N
Sbjct: 314 GCVQNGLFDEGLRFFRQMLMAK-IKPKSYSFSSIMPACAHLTT--LHLGKQLHGYITRNG 370
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
++ N IA+ LVDMYAKCG ++ A +F+ M R+++SWTA+I G A G + DA+ LFE
Sbjct: 371 FDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFE 430
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ G+KPN + F VLTAC H GLVDE KYF + ++ + P ++HY + DL G+A
Sbjct: 431 QMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRA 490
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G LEEAY+ I M + P IW + L+AC+ H DMAE+V + L V P N+ G + L
Sbjct: 491 GRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILE-VDP-NNTGAYIL 548
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y+ +W+ A + R M +RK S I
Sbjct: 549 LANIYSAARRWKEAAKWRASMRRIGIRKTPACSWI 583
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 156/331 (47%), Gaps = 19/331 (5%)
Query: 22 ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSF----GFAR----KLF 73
+LKSC +L + LH +I+++G +Y +L++ Y F G R ++F
Sbjct: 112 VLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVF 171
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
DE+ ER + R FE MP +++ SW+ +IA G Y+ L+
Sbjct: 172 DEMTERTRSVRTVSVLSEDS------VRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLR 225
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
+ REM L PD T+ +VL + +V + GK HG ++ + + +A+ L+D
Sbjct: 226 MIREM-GGANLKPDSFTLSSVLPLIAE--NVDISRGKEIHGCSIRQGLDADIYVASSLID 282
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
MYAKC + + VF L+ ER+ ISW ++I G G ++ L F M +KP +
Sbjct: 283 MYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYS 342
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
F+ ++ AC H + G++ I + I +VD++ K G + A ++ M
Sbjct: 343 FSSIMPACAHLTTLHLGKQLHGYITRN-GFDENIFIASSLVDMYAKCGNIRTAKQIFDRM 401
Query: 314 RLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
RL +++ W + + C H Q A + +Q
Sbjct: 402 RLR-DMVSWTAMIMGCALHGQAPDAIELFEQ 431
>gi|357138593|ref|XP_003570875.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 664
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 119/327 (36%), Positives = 195/327 (59%), Gaps = 9/327 (2%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A +LF E+PER+ V+WNT+++G+ + G++ A +F MP ++ SW+ +I+ + + GA
Sbjct: 310 ALRLFAEMPERDLVSWNTILQGHVQQGDMATANTWFRGMPEKDETSWNTLISGHKDEGA- 368
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L L EMI GL PD+ T+ V+S C+ L ++G GK H + VK +E + +
Sbjct: 369 ---LALLSEMIRG-GLRPDEATLSVVISICASLVALGY--GKMVHLYAVKTGFEHDALVM 422
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
+ L+ MY+KCG + A VF+L+ +R+ ++W A+I A+ G + +AL LF M G +
Sbjct: 423 SSLISMYSKCGLIAEASQVFKLLVQRDTVTWNAMIATYAYHGMASEALKLFNKMTKDGFR 482
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+ TF VL+AC H G + EG +YF+ + E+++L PR HY CMVDL G+ GF+ +AY+
Sbjct: 483 PDHATFLSVLSACAHKGDLYEGCRYFRSMQEDWNLTPRSDHYSCMVDLLGRLGFIYQAYD 542
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
R + + + W + +AC H + E + K L+ +P +DGG++TL+ ++Y
Sbjct: 543 FTRKIPSDLQINAWETLFSACNAHGDVQLGEVIAKDVLQ-ARP-SDGGMYTLLANIYASK 600
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
E W A VR +M Q ++K G S +
Sbjct: 601 EMWSSAASVRGVMKEQGLKKETGCSWV 627
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 130/271 (47%), Gaps = 25/271 (9%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR++FD +P RN V+W ++ GY++ G V EAR+ F+RMP RNV SW+AM++ YL G
Sbjct: 93 ARRVFDAMPVRNPVSWAALLTGYARCGRVAEARELFDRMPDRNVVSWNAMMSGYLRNGMV 152
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKS-AHGFIVKNEWELNEQI 187
+ +LF M S ++ M G + L L S +H V N
Sbjct: 153 ERARELFDMMPSRNDVSWLTMISGYIKK--RRLREARELFDLSPSHPTSVCNA------- 203
Query: 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
L+ Y LK A +F M+ R+ +SW +I G A G + A SLF+ M
Sbjct: 204 ---LLSGYVALSCLKDAEELFGRMQRRDPVSWNVMITGYARAGRMQVAQSLFDEMP---- 256
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
+ + +++T V+ + G VD K F+ I + + + M+ F ++ L++A
Sbjct: 257 QKDTISWTAVMRGYLQNGDVDASWKVFQDIPDR-----DVVAWNTMMGGFVQSERLDDAL 311
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
+ M E +++ W + L +Q DMA
Sbjct: 312 RLFAEMP-ERDLVSWNTILQG--HVQQGDMA 339
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 125/306 (40%), Gaps = 63/306 (20%)
Query: 84 WNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEG 143
WN +I + ++G V AR F+ MP RNV +W+ MI+ + ++F M
Sbjct: 46 WNAVITAHLRAGRVAAARRVFDEMPERNVFTWNCMISGLVGNRMLADARRVFDAMP---- 101
Query: 144 LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKY 203
+ ++ A+L+G YA+CG +
Sbjct: 102 -VRNPVSWAALLTG-------------------------------------YARCGRVAE 123
Query: 204 ALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263
A +F+ M +RNV+SW A++ G G E A LF+MM + N++++ +++ +
Sbjct: 124 ARELFDRMPDRNVVSWNAMMSGYLRNGMVERARELFDMMPSR----NDVSWLTMISGYIK 179
Query: 264 TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF--LEEAYEVI-RTMRLEPNVI 320
+ E R+ F DL P C L G L++A E+ R R +P +
Sbjct: 180 KRRLREARELF-------DLSPSHPTSVCNALLSGYVALSCLKDAEELFGRMQRRDP--V 230
Query: 321 IWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKL 380
W + + +A+ + + P+ D +T + Y N + + +V +
Sbjct: 231 SWNVMITGYARAGRMQVAQSLFDEM-----PQKDTISWTAVMRGYLQNGDVDASWKVFQD 285
Query: 381 MLNQNV 386
+ +++V
Sbjct: 286 IPDRDV 291
>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
Length = 784
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 133/397 (33%), Positives = 214/397 (53%), Gaps = 37/397 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF +M + F+ +L SCT + + +HS ++K F SH++V +SLL
Sbjct: 96 LHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLL-- 153
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
Y+K+G +CEAR F+ +P R+V S +A+I+
Sbjct: 154 ----------------------------DMYAKAGKICEARRVFDGLPERDVVSCTAIIS 185
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y G + L LFR + EG+ + +T +VL+ S G L G+ H +++ +
Sbjct: 186 GYAQLGLDEEALDLFRRL-QREGMRSNYVTYASVLTALS--GLAALDHGRQVHSHVLRAK 242
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ L+DMY+KCG L Y+ +F+ M ER VISW A++ G + G +A+ LF+
Sbjct: 243 LPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFK 302
Query: 241 MM-QATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFG 298
+M + VKP+ +TF VL+ C H G+ D G + +++M++++ EP I+HYGC+VDLFG
Sbjct: 303 LMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFG 362
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG +EEA+E I+ M EP IWGS L AC+ H+ + E V ++ L ++ EN G +
Sbjct: 363 RAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLE-IESENAGN-Y 420
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++ +LY +W+ VR+LM + V K G S I
Sbjct: 421 VILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWI 457
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 150/316 (47%), Gaps = 45/316 (14%)
Query: 22 ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERN 80
+L C + +H+H++K + VY+ T L+ Y G AR++ DE+PERN
Sbjct: 16 VLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERN 75
Query: 81 AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMIS 140
V+W MI GYS+ G EA L LF EM+
Sbjct: 76 VVSWTAMISGYSQRGYASEA-------------------------------LHLFVEMLM 104
Query: 141 NEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGF 200
+ G P++ T VL+ C+ S G +G+ H ++K +E + + + L+DMYAK G
Sbjct: 105 S-GTAPNEFTFATVLTSCT--SSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGK 161
Query: 201 LKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260
+ A VF+ + ER+V+S TA+I G A G E+AL LF +Q G++ N +T+ VLTA
Sbjct: 162 ICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTA 221
Query: 261 CVHTGLVDEGRKYFKMIDEEYDLEPRIQHY----GCMVDLFGKAGFLEEAYEVIRTMRLE 316
+D GR+ + L ++ Y ++D++ K G L + + +M E
Sbjct: 222 LSGLAALDHGRQVHSHV-----LRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMP-E 275
Query: 317 PNVIIWGSFLAACKEH 332
VI W + L +H
Sbjct: 276 RTVISWNAMLVGYSKH 291
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 105/210 (50%), Gaps = 8/210 (3%)
Query: 142 EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFL 201
+GL + +VL+ C + + G+ H ++K +E + T L+ +Y KC L
Sbjct: 4 QGLEVEFQGYDSVLTEC--ISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCL 61
Query: 202 KYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261
A V + M ERNV+SWTA+I G + RGY+ +AL LF M +G PNE TF VLT+C
Sbjct: 62 GDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSC 121
Query: 262 VHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVI- 320
+ GR+ ++ + E I ++D++ KAG + EA V + E +V+
Sbjct: 122 TSSSGFQLGRQIHSLVIKT-SFESHIFVGSSLLDMYAKAGKICEARRVFDGLP-ERDVVS 179
Query: 321 ---IWGSFLAACKEHKQFDMAERVIKQALR 347
I + + + D+ R+ ++ +R
Sbjct: 180 CTAIISGYAQLGLDEEALDLFRRLQREGMR 209
>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 624
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 135/386 (34%), Positives = 203/386 (52%), Gaps = 36/386 (9%)
Query: 11 SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFAR 70
S+ D +++ L C L + +H GF+ V+V +SL
Sbjct: 226 SLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSL------------- 272
Query: 71 KLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDP 130
I YSK G + +AR F+R+P RN W++MIA Y + +
Sbjct: 273 -----------------IDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKE 315
Query: 131 GLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATI 190
++LFREM G D TI VLS C H G+ L G+ H + +N E++
Sbjct: 316 AIELFREM-QIGGFAADAATIACVLSACGHWGA--LAQGRWIHLYCERNSIEMDLNARNA 372
Query: 191 LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQ-ATGVKP 249
L+ MY+KCG ++ AL +F + + ++ SW+A+I G A G S+ AL LF M+ + ++P
Sbjct: 373 LIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRP 432
Query: 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEV 309
NE+TF GVL AC H G VD+G YF + + Y+L P I+HYGCMVDL G+A L EA +
Sbjct: 433 NEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKF 492
Query: 310 IRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNE 369
IRT+ ++P+V+IW S L AC+ H ++AE KQ + ++P G L+ ++Y
Sbjct: 493 IRTLPIQPDVVIWRSLLFACRNHGNIELAEFAAKQ-IEELEPRR-CGARVLLSNVYASAS 550
Query: 370 KWEGAERVRKLMLNQNVRKARGSSVI 395
+W +RVRK M Q ++K G S +
Sbjct: 551 RWGDVKRVRKDMATQRIKKQPGCSFV 576
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 171/346 (49%), Gaps = 36/346 (10%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L++ M R D++S +LK+C + L +HS LKLG V+V
Sbjct: 112 IALYNLMLRNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQ------ 165
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP--LRNVASWSAM 118
N +I +S G V AR F+ +P +R+V SW++M
Sbjct: 166 ------------------------NALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSM 201
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I+ YL + Y+ LK+F E++ + L+PD++T+ + LS C LG + L GK HG
Sbjct: 202 ISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDL--GKKIHGLFTG 259
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ + L+ + + L+DMY+KCG ++ A VF+ + RN + WT++I G A ++A+ L
Sbjct: 260 SGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIEL 319
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F MQ G + T VL+AC H G + +GR + + E +E + ++ ++
Sbjct: 320 FREMQIGGFAADAATIACVLSACGHWGALAQGR-WIHLYCERNSIEMDLNARNALIGMYS 378
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344
K G +++A E+ + +P++ W + ++ + + D A + Q
Sbjct: 379 KCGDIQKALEIFHGLT-QPDIFSWSAVISGLAMNGESDKALHLFSQ 423
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 70/169 (41%), Gaps = 40/169 (23%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF +M +D+ +I +L +C H+ L G H+Y
Sbjct: 317 IELFREMQIGGFAADAATIACVLSACGHWGALAQ-----------GRWIHLYC------- 358
Query: 61 YVVTSFGFARKLFDELPERNAV-----TWNTMIKGYSKSGNVCEARDFFERMPLRNVASW 115
ERN++ N +I YSK G++ +A + F + ++ SW
Sbjct: 359 -----------------ERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSW 401
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV 164
SA+I+ G D L LF +M + P+++T VL C+H G V
Sbjct: 402 SAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGGFV 450
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 69/146 (47%), Gaps = 4/146 (2%)
Query: 203 YALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACV 262
++ +F + + NV SW + + + + ++L+ +M G P+ +F VL AC
Sbjct: 79 FSRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACA 138
Query: 263 HTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVI 320
L+ +GR+ + + L+ +Q+ ++ F G +E A V + L +V+
Sbjct: 139 RLSLLHKGREIHSSTLKLGVHLDVFVQN--ALISAFSSCGAVEAARAVFDMLPALVRDVV 196
Query: 321 IWGSFLAACKEHKQFDMAERVIKQAL 346
W S ++ + ++++A +V + L
Sbjct: 197 SWNSMISGYLQSHRYELALKVFWELL 222
>gi|356518597|ref|XP_003527965.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g21470-like [Glycine max]
Length = 535
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 131/330 (39%), Positives = 198/330 (60%), Gaps = 11/330 (3%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR++F+ +PERN W++MI GY K GNV EA F+ +P+RN+ W++MIA Y+ G
Sbjct: 195 AREVFEMMPERNCFVWSSMIHGYFKKGNVTEAAAVFDWVPVRNLEIWNSMIAGYVQNGFG 254
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ L F E + EG PD+ T+ +VLS C+ LG L +GK H I +N +
Sbjct: 255 EKALLAF-EGMGAEGFEPDEFTVVSVLSACAQLGH--LDVGKQIHHMIEHKGIVVNPFVL 311
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
+ LVDMYAKCG L A +VFE E+N+ W A+I G A G + L F M+ + ++
Sbjct: 312 SGLVDMYAKCGDLVNARLVFEGFTEKNIFCWNAMISGFAINGKCSEVLEFFGRMEESNIR 371
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+ +TF VL+AC H GLV E + + E Y +E I+HYGCMVDL G+AG L++AY+
Sbjct: 372 PDGITFLTVLSACAHRGLVTEALEVISKM-EGYRIEIGIKHYGCMVDLLGRAGRLKDAYD 430
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT---LICDLY 365
+I M ++PN + G+ L AC+ H +MAE+V+K ++ E G + L+ ++Y
Sbjct: 431 LIVRMPMKPNDTVLGAMLGACRIHSDMNMAEQVMK----LICEEPVTGASSHNVLLSNIY 486
Query: 366 TMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+EKWE AER++++ ++ ++ G S I
Sbjct: 487 AASEKWEKAERMKRITVDGGSQRIPGCSSI 516
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 156/329 (47%), Gaps = 19/329 (5%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-- 61
+ Q + V S + L + K+C L + LH+ +K G S V + T+LL Y
Sbjct: 35 YKQTRHEGVYDSSVAPL-LFKACASLPFLHYVKALHAESIKAGSESDVIIGTALLTTYSK 93
Query: 62 --VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
VV AR LFD +PERN VTWN MI GY ++G+ A FE+M + +WS MI
Sbjct: 94 CGVVRD---ARNLFDTMPERNVVTWNAMISGYLRNGDTESAYLVFEKMQGKTQVTWSQMI 150
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ G +LF E + +E + +T ++ G + +G + A + +
Sbjct: 151 GGFARNGDIATARRLFDE-VPHE--LKNVVTWTVMVDGYARIGEM------EAAREVFEM 201
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
E N + + ++ Y K G + A VF+ + RN+ W ++I G G+ E AL F
Sbjct: 202 MPERNCFVWSSMIHGYFKKGNVTEAAAVFDWVPVRNLEIWNSMIAGYVQNGFGEKALLAF 261
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
E M A G +P+E T VL+AC G +D G++ MI+ + + G +VD++ K
Sbjct: 262 EGMGAEGFEPDEFTVVSVLSACAQLGHLDVGKQIHHMIEHKGIVVNPFVLSG-LVDMYAK 320
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
G L A V E N+ W + ++
Sbjct: 321 CGDLVNARLVFEGF-TEKNIFCWNAMISG 348
>gi|356567066|ref|XP_003551744.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 488
Score = 240 bits (613), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 137/397 (34%), Positives = 225/397 (56%), Gaps = 10/397 (2%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV 63
F+ M + +V D FS +LKS + LT + +H +LK GF H++V L+H Y
Sbjct: 95 FNLMRQNNVAPDQFSFNFLLKSRSRTTPLTHHNDVHGAVLKFGFCRHLHVQNGLIHFYAN 154
Query: 64 TSFGF-ARKLFDELP----ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
AR++F+++ E + V+W+ ++ + K+G + AR F+ MP R+V SW+AM
Sbjct: 155 RGMTLLARRVFEDVLQLGLEVDVVSWSGLLVAHVKAGELEVARRVFDEMPQRDVVSWTAM 214
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
+ Y A L+LF EM G+ PD++T+ +++S C+ LG + G H F+ +
Sbjct: 215 LTGYSQAKRPREALELFGEM-RRSGVWPDEVTMVSLVSACASLGD--METGMMVHRFVEE 271
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
N + + L+DMY KCG L+ A VF M +++I+W ++ A+ G +++A L
Sbjct: 272 NGFGWMVALCNALIDMYGKCGCLEEAWRVFHGMTRKSLITWNTMVTVCANYGNADEAFRL 331
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
FE M +GV P+ +T +L A H GLVDEG + F+ +D +Y +EPRI+HYG ++D+ G
Sbjct: 332 FEWMVCSGVVPDSVTLLALLVAYAHKGLVDEGIRLFESMDRDYGVEPRIEHYGAVIDMLG 391
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG L+EAY+++ + + N +WG+ L AC+ H +M E++IK+ L + E GG +
Sbjct: 392 RAGRLQEAYDLLTNIPIPCNDAVWGALLGACRIHGDVEMGEKLIKKLLELKPDE--GGYY 449
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ D+Y + A R+ ML RK G S +
Sbjct: 450 ILLRDIYVAAGQTVEANETRQAMLASRARKNPGCSWV 486
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 157/344 (45%), Gaps = 33/344 (9%)
Query: 16 SFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKL 72
+F++ H+ + CT +L + LH+H + H V L V+ G +A ++
Sbjct: 7 AFTLAHMAERCTCMRDLKL---LHAHAFRTRLHDHTVVLGKLFRFAAVSPLGDLRYAHRM 63
Query: 73 FDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGL 132
FD++P +NT+I+ ++ S + F M NVA + +++
Sbjct: 64 FDQMPHPTTFFYNTLIRAHAHSTTPSLSSLSFNLMRQNNVAP---------DQFSFN--- 111
Query: 133 KLFREMISNEGLTPDQMTIGAVL--SGCSHLG-SVGLLMGKSAHGF------IVKNEWEL 183
L + LT GAVL C HL GL+ + G + ++ +L
Sbjct: 112 FLLKSRSRTTPLTHHNDVHGAVLKFGFCRHLHVQNGLIHFYANRGMTLLARRVFEDVLQL 171
Query: 184 NEQIATI----LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
++ + L+ + K G L+ A VF+ M +R+V+SWTA++ G + +AL LF
Sbjct: 172 GLEVDVVSWSGLLVAHVKAGELEVARRVFDEMPQRDVVSWTAMLTGYSQAKRPREALELF 231
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M+ +GV P+E+T +++AC G ++ G + + EE + ++D++GK
Sbjct: 232 GEMRRSGVWPDEVTMVSLVSACASLGDMETGMMVHRFV-EENGFGWMVALCNALIDMYGK 290
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIK 343
G LEEA+ V M ++I W + + C + D A R+ +
Sbjct: 291 CGCLEEAWRVFHGM-TRKSLITWNTMVTVCANYGNADEAFRLFE 333
>gi|449437737|ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Cucumis sativus]
Length = 649
Score = 240 bits (613), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 118/329 (35%), Positives = 198/329 (60%), Gaps = 6/329 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A KLF+++PER +WNTMI G+ ++G + A DFF +M +NV +W+A+I+ ++ G
Sbjct: 272 AFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRS 331
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ LK+F EM + + P++ T +VL CS L + L G+ H I K ++ +
Sbjct: 332 EEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAA--LCEGQQIHQIISKTVYQEVADVV 389
Query: 189 TILVDMYAKCGFLKYALMVFE--LMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
+ L++MY+KCG L+ A +F+ + R+V+SW +I AH G+ A+SLF+ MQA G
Sbjct: 390 SALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALG 449
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
+P+ +T+ +L+AC H GLVDEG K F+ + + ++ R H+ C+VDLFG+AG L+EA
Sbjct: 450 FRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHFTCLVDLFGRAGRLQEA 509
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366
++ I+ + ++P+ +W + LA C H D+ ++ + L +PEN G + ++ ++Y
Sbjct: 510 FDFIKGLEVKPSASVWAALLAGCNVHGHIDLG-KLTAEKLLETEPEN-AGTYLVLSNIYA 567
Query: 367 MNEKWEGAERVRKLMLNQNVRKARGSSVI 395
KW A VR M ++ ++K G S I
Sbjct: 568 STGKWREAAGVRMKMKDKGLKKQPGCSWI 596
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 151/310 (48%), Gaps = 28/310 (9%)
Query: 48 ISHVYVATSLLHEYVV-TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFER 106
I +V T+L+ YV AR+LFD +P +N ++WNTMI+GY++ G + +A D FE+
Sbjct: 126 IKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEK 185
Query: 107 MPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGL 166
MP RNV SW+ +I A++ D +LF M + ++ M G LS + L
Sbjct: 186 MPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAG--LSKNGRIDDARL 243
Query: 167 LMGK---------------SAHGFIVKNEWELNEQIA-------TILVDMYAKCGFLKYA 204
L K A + ++L EQ+ ++ + + G L+ A
Sbjct: 244 LFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERA 303
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLF-EMMQATGVKPNEMTFTGVLTACVH 263
+ F M +NV++WTA+I G G SE+AL +F EM A VKPNE TF VL AC
Sbjct: 304 VDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSK 363
Query: 264 TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRL-EPNVIIW 322
+ EG++ ++I + E +++++ K G LE A ++ + +V+ W
Sbjct: 364 LAALCEGQQIHQIISKTVYQEV-ADVVSALINMYSKCGELELARKIFDDGSIGHRDVVSW 422
Query: 323 GSFLAACKEH 332
+AA H
Sbjct: 423 NGMIAAYAHH 432
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/307 (25%), Positives = 126/307 (41%), Gaps = 56/307 (18%)
Query: 80 NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI 139
N N +I K G + EAR FE MP R+V SW+A+I Y+ G + LF
Sbjct: 65 NVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFD--- 121
Query: 140 SNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG 199
+N+ N T LV Y +
Sbjct: 122 --------------------------------------RNDAIKNVVTWTALVSGYVRWN 143
Query: 200 FLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLT 259
++ A +F+ M +NVISW +I G A +G+ + AL LFE M + N +++ V+T
Sbjct: 144 RIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEKMP----ERNVVSWNTVIT 199
Query: 260 ACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNV 319
A + VDE ++ F + E + + MV K G +++A + M + NV
Sbjct: 200 AFMQRRRVDEAQELFNRMPER-----DVISWTTMVAGLSKNGRIDDARLLFDKMPVR-NV 253
Query: 320 IIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRK 379
+ W + + ++ + D A ++ +Q PE + + + + N K E A
Sbjct: 254 VSWNTMIIGYAQNMRLDEAFKLFEQM-----PERELSSWNTMITGFIQNGKLERAVDFFY 308
Query: 380 LMLNQNV 386
M N+NV
Sbjct: 309 KMSNKNV 315
>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Vitis vinifera]
Length = 1053
Score = 240 bits (613), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 133/397 (33%), Positives = 215/397 (54%), Gaps = 37/397 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF +M + F+ +L SCT + + +HS ++K F SH++V +SLL
Sbjct: 563 LHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDM 622
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
Y +K+G +CEAR F+ +P R+V S +A+I+
Sbjct: 623 Y------------------------------AKAGKICEARRVFDGLPERDVVSCTAIIS 652
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y G + L LFR + EG+ + +T +VL+ S L + L G+ H +++ +
Sbjct: 653 GYAQLGLDEEALDLFRRL-QREGMRSNYVTYASVLTALSGLAA--LDHGRQVHSHVLRAK 709
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ L+DMY+KCG L Y+ +F+ M ER VISW A++ G + G +A+ LF+
Sbjct: 710 LPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFK 769
Query: 241 MM-QATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFG 298
+M + VKP+ +TF VL+ C H G+ D G + +++M++++ EP I+HYGC+VDLFG
Sbjct: 770 LMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFG 829
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG +EEA+E I+ M EP IWGS L AC+ H+ + E V ++ L ++ EN G +
Sbjct: 830 RAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLE-IESENAGN-Y 887
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++ +LY +W+ VR+LM + V K G S I
Sbjct: 888 VILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWI 924
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 150/316 (47%), Gaps = 45/316 (14%)
Query: 22 ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERN 80
+L C + +H+H++K + VY+ T L+ Y G AR++ DE+PERN
Sbjct: 483 VLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERN 542
Query: 81 AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMIS 140
V+W MI GYS+ G EA L LF EM+
Sbjct: 543 VVSWTAMISGYSQRGYASEA-------------------------------LHLFVEMLM 571
Query: 141 NEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGF 200
+ G P++ T VL+ C+ S G +G+ H ++K +E + + + L+DMYAK G
Sbjct: 572 S-GTAPNEFTFATVLTSCT--SSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGK 628
Query: 201 LKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260
+ A VF+ + ER+V+S TA+I G A G E+AL LF +Q G++ N +T+ VLTA
Sbjct: 629 ICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTA 688
Query: 261 CVHTGLVDEGRKYFKMIDEEYDLEPRIQHY----GCMVDLFGKAGFLEEAYEVIRTMRLE 316
+D GR+ + L ++ Y ++D++ K G L + + +M E
Sbjct: 689 LSGLAALDHGRQVHSHV-----LRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMP-E 742
Query: 317 PNVIIWGSFLAACKEH 332
VI W + L +H
Sbjct: 743 RTVISWNAMLVGYSKH 758
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 105/210 (50%), Gaps = 8/210 (3%)
Query: 142 EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFL 201
+GL + +VL+ C + + G+ H ++K +E + T L+ +Y KC L
Sbjct: 471 QGLEVEFQGYDSVLTEC--ISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCL 528
Query: 202 KYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261
A V + M ERNV+SWTA+I G + RGY+ +AL LF M +G PNE TF VLT+C
Sbjct: 529 GDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSC 588
Query: 262 VHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVI- 320
+ GR+ ++ + E I ++D++ KAG + EA V + E +V+
Sbjct: 589 TSSSGFQLGRQIHSLVIKT-SFESHIFVGSSLLDMYAKAGKICEARRVFDGLP-ERDVVS 646
Query: 321 ---IWGSFLAACKEHKQFDMAERVIKQALR 347
I + + + D+ R+ ++ +R
Sbjct: 647 CTAIISGYAQLGLDEEALDLFRRLQREGMR 676
>gi|357167426|ref|XP_003581157.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61800-like, partial [Brachypodium distachyon]
Length = 357
Score = 240 bits (613), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 128/360 (35%), Positives = 203/360 (56%), Gaps = 6/360 (1%)
Query: 39 HSHILKLGFISHVYVATSLLHEYVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNV 97
H+ + + +V +L+ Y + A ++FDE+P + V++N ++ GY K+G +
Sbjct: 1 HAVAVTRNLLPFAHVGNALVSLYAKNALPDSACRVFDEMPAPDVVSYNALMDGYIKAGRL 60
Query: 98 CEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSG 157
A F RMP R+ SW ++A AG ++ + LF M EG PD + + AVLS
Sbjct: 61 GLATKEFMRMPQRDAVSWGTVVAGCAKAGRWEEAVLLFDRM-RWEGFRPDDIVLAAVLSC 119
Query: 158 CSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVI 217
C+ LG+ L G+ H ++ ++ N + T LVD+YAKCG ++ A VF+ ERNV
Sbjct: 120 CAQLGA--LEKGREVHEYVRQSRPRPNVFLCTGLVDLYAKCGCVEIAREVFDTCPERNVF 177
Query: 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI 277
+W ALI G A G+ L F+ M A G +P+ +TF GVL C H GL+D ++ F +
Sbjct: 178 TWNALIVGLAMHGHGTVTLKYFDRMLAEGFRPDGVTFLGVLIGCSHAGLIDMAKRIFFEM 237
Query: 278 DEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDM 337
+ +Y + ++HYGCM DL G+AG +EEA E+++ M +E + +WG LA C++H +
Sbjct: 238 EMKYGVSRELKHYGCMADLLGRAGLIEEAMEMVKKMPMEGDTYVWGGILAGCRKHGNVEE 297
Query: 338 AERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
AE + L + PE DGGV++++ +Y +WE RVRKLM + + G S I++
Sbjct: 298 AEVAARHLLEL-NPE-DGGVYSVMTGIYADAGRWEDVARVRKLMDERVGARNVGCSSITT 355
>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 748
Score = 240 bits (613), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 125/327 (38%), Positives = 192/327 (58%), Gaps = 5/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A LF ++P +N+V+WNTMI GY+++G + A + F+ M +N+ SW+++IA +L Y
Sbjct: 378 ALNLFRQMPIKNSVSWNTMISGYAQAGQMDRATEIFQAMREKNIVSWNSLIAGFLQNNLY 437
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
LK M+ EG PDQ T LS C++L + L +G H +I+K+ + + +
Sbjct: 438 LDALKSL-VMMGKEGKKPDQSTFACTLSACANLAA--LQVGNQLHEYILKSGYMNDLFVG 494
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+ MYAKCG ++ A VF +E ++ISW +LI G A GY+ A FE M + V
Sbjct: 495 NALIAMYAKCGRVQSAEQVFRDIECVDLISWNSLISGYALNGYANKAFKAFEQMSSERVV 554
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+E+TF G+L+AC H GL ++G FK + E++ +EP +HY C+VDL G+ G LEEA+
Sbjct: 555 PDEVTFIGMLSACSHAGLANQGLDIFKCMIEDFAIEPLAEHYSCLVDLLGRVGRLEEAFN 614
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+R M+++ N +WGS L AC+ HK ++ R + L ++P N TL +++
Sbjct: 615 TVRGMKVKANAGLWGSLLGACRVHKNLELG-RFAAERLFELEPHNASNYITL-SNMHAEA 672
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
+WE ERVR LM + K G S I
Sbjct: 673 GRWEEVERVRMLMRGKRAGKQPGCSWI 699
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 97/348 (27%), Positives = 149/348 (42%), Gaps = 90/348 (25%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A +LF+++P NAV+W TM+ G +K G + EAR+ F+RMP +NV SW+AMIA Y+
Sbjct: 223 AWQLFEKIPNPNAVSWVTMLCGLAKYGKMAEARELFDRMPSKNVVSWNAMIATYVQDLQV 282
Query: 129 DPGLKLFREM--------------------------ISNEGLTPDQMTIGAVLSGCSHLG 162
D +KLF++M + N+ D A++SG G
Sbjct: 283 DEAVKLFKKMPHKDSVSWTTIINGYIRVGKLDEARQVYNQMPCKDITAQTALMSGLIQNG 342
Query: 163 SV-------------------GLLMGKSAHGFI-----------VKNEWELNEQIATILV 192
+ ++ G S G + +KN N I+
Sbjct: 343 RIDEADQMFSRIGAHDVVCWNSMIAGYSRSGRMDEALNLFRQMPIKNSVSWNTMISG--- 399
Query: 193 DMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEM 252
YA+ G + A +F+ M E+N++SW +LI G DAL MM G KP++
Sbjct: 400 --YAQAGQMDRATEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKKPDQS 457
Query: 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF---------GKAGFL 303
TF L+AC + + G + EY L+ G M DLF K G +
Sbjct: 458 TFACTLSACANLAALQVGNQL-----HEYILKS-----GYMNDLFVGNALIAMYAKCGRV 507
Query: 304 EEAYEVIRTMRLEPNVIIWGSFLA-------ACKEHKQFDM--AERVI 342
+ A +V R + ++I W S ++ A K K F+ +ERV+
Sbjct: 508 QSAEQVFRDIEC-VDLISWNSLISGYALNGYANKAFKAFEQMSSERVV 554
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 140/285 (49%), Gaps = 28/285 (9%)
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
F A+K+F+++P ++ V++N+M+ GY+++G + A FFE M RNV SW+ M+A Y+ +
Sbjct: 158 FNDAKKVFEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFESMTERNVVSWNLMVAGYVKS 217
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF---IVKNEWE 182
G +LF E I N P+ ++ +L G + G M ++ F KN
Sbjct: 218 GDLSSAWQLF-EKIPN----PNAVSWVTMLCGLAKYGK----MAEARELFDRMPSKNVVS 268
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
N IAT + D+ + A+ +F+ M ++ +SWT +I G G ++A ++ M
Sbjct: 269 WNAMIATYVQDLQ-----VDEAVKLFKKMPHKDSVSWTTIINGYIRVGKLDEARQVYNQM 323
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
+ T +++ + G +DE + F I + + M+ + ++G
Sbjct: 324 PCKDITAQ----TALMSGLIQNGRIDEADQMFSRIGAH-----DVVCWNSMIAGYSRSGR 374
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALR 347
++EA + R M ++ N + W + ++ + Q D A + QA+R
Sbjct: 375 MDEALNLFRQMPIK-NSVSWNTMISGYAQAGQMDRATEIF-QAMR 417
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 139/313 (44%), Gaps = 25/313 (7%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A ++F + +N VT+N+MI +K+ + +AR F++M LRN+ SW+ MIA YL+
Sbjct: 36 AIRIFFNMTHKNLVTYNSMISVLAKNARIRDARQLFDQMSLRNLVSWNTMIAGYLHNNMV 95
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ +LF M D + +++ + G + + A + +L+
Sbjct: 96 EEASELFDVMPER-----DNFSWALMITCYTRKGKL-----EKARELLELVPDKLDTACW 145
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
++ YAK G A VFE M ++++S+ +++ G G AL FE M +
Sbjct: 146 NAMIAGYAKKGQFNDAKKVFEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFESM----TE 201
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
N +++ ++ V +G + + F+ I P + M+ K G + EA E
Sbjct: 202 RNVVSWNLMVAGYVKSGDLSSAWQLFEKIP-----NPNAVSWVTMLCGLAKYGKMAEARE 256
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+ M NV+ W + +A + Q D A ++ K+ P D +T I + Y
Sbjct: 257 LFDRMP-SKNVVSWNAMIATYVQDLQVDEAVKLFKKM-----PHKDSVSWTTIINGYIRV 310
Query: 369 EKWEGAERVRKLM 381
K + A +V M
Sbjct: 311 GKLDEARQVYNQM 323
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 75/145 (51%), Gaps = 5/145 (3%)
Query: 7 MHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTS 65
M ++ D + L +C + L V + LH +ILK G+++ ++V +L+ Y
Sbjct: 447 MGKEGKKPDQSTFACTLSACANLAALQVGNQLHEYILKSGYMNDLFVGNALIAMYAKCGR 506
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNV----ASWSAMIAA 121
A ++F ++ + ++WN++I GY+ +G +A FE+M V ++ M++A
Sbjct: 507 VQSAEQVFRDIECVDLISWNSLISGYALNGYANKAFKAFEQMSSERVVPDEVTFIGMLSA 566
Query: 122 YLNAGAYDPGLKLFREMISNEGLTP 146
+AG + GL +F+ MI + + P
Sbjct: 567 CSHAGLANQGLDIFKCMIEDFAIEP 591
>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Glycine max]
Length = 674
Score = 240 bits (613), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 135/397 (34%), Positives = 219/397 (55%), Gaps = 37/397 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ + +M ++++ DSF++ IL T N+T +H + ++ GF V++ +SL
Sbjct: 184 LNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSL--- 240
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
I Y+K V + F + R+ SW+++IA
Sbjct: 241 ---------------------------IDMYAKCTQVELSVCAFHLLSNRDAISWNSIIA 273
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
+ G +D GL FR M+ E + P Q++ +V+ C+HL ++ L GK H +I++
Sbjct: 274 GCVQNGRFDQGLGFFRRMLK-EKVKPMQVSFSSVIPACAHLTALNL--GKQLHAYIIRLG 330
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELME--ERNVISWTALICGSAHRGYSEDALSL 238
++ N+ IA+ L+DMYAKCG +K A +F +E +R+++SWTA+I G A G++ DA+SL
Sbjct: 331 FDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSL 390
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
FE M GVKP + F VLTAC H GLVDEG KYF + ++ + P ++HY + DL G
Sbjct: 391 FEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLG 450
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG LEEAY+ I M EP +W + LAAC+ HK ++AE+V+ + L +V P N G
Sbjct: 451 RAGRLEEAYDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKIL-LVDPGN-MGAH 508
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++ ++Y+ ++W A ++R M ++K S I
Sbjct: 509 VIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPACSWI 545
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/331 (25%), Positives = 162/331 (48%), Gaps = 15/331 (4%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV 63
F+ + + D +L++ T F + + LH+ +++LGF +Y A +L++ Y
Sbjct: 64 FNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHAAVIRLGFHFDLYTANALMNMY-- 121
Query: 64 TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL 123
+ F E P+ N S + R F+RMP+R+V SW+ +IA
Sbjct: 122 SKFHPHLSPLHEFPQARHNHNNKY------SVKIDSVRKLFDRMPVRDVVSWNTVIAGNA 175
Query: 124 NAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWEL 183
G Y+ L + +EM E L PD T+ ++L + +V GK HG+ +++ ++
Sbjct: 176 QNGMYEEALNMVKEM-GKENLRPDSFTLSSILPIFTEHANV--TKGKEIHGYAIRHGFDK 232
Query: 184 NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQ 243
+ I + L+DMYAKC ++ ++ F L+ R+ ISW ++I G G + L F M
Sbjct: 233 DVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRML 292
Query: 244 ATGVKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
VKP +++F+ V+ AC H ++ G++ + +I +D I ++D++ K G
Sbjct: 293 KEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIA--SSLLDMYAKCGN 350
Query: 303 LEEAYEVIRTMRL-EPNVIIWGSFLAACKEH 332
++ A + + + + +++ W + + C H
Sbjct: 351 IKMARYIFNKIEMCDRDMVSWTAIIMGCAMH 381
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 115/262 (43%), Gaps = 30/262 (11%)
Query: 114 SWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH 173
+W +I Y + G L F ++ + G++PD+ ++L + L +S H
Sbjct: 43 AWICIIKCYASHGLLRHSLASF-NLLRSFGISPDRHLFPSLLRASTLFKHFNL--AQSLH 99
Query: 174 GFIVKNEWELNEQIATILVDMYAKCGFL----------------KYALMV------FELM 211
+++ + + A L++MY+K KY++ + F+ M
Sbjct: 100 AAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRM 159
Query: 212 EERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR 271
R+V+SW +I G+A G E+AL++ + M ++P+ T + +L V +G+
Sbjct: 160 PVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGK 219
Query: 272 K-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330
+ + I +D + I ++D++ K +E + + + I W S +A C
Sbjct: 220 EIHGYAIRHGFDKDVFIG--SSLIDMYAKCTQVELSVCAFHLLS-NRDAISWNSIIAGCV 276
Query: 331 EHKQFDMAERVIKQALR-MVKP 351
++ +FD ++ L+ VKP
Sbjct: 277 QNGRFDQGLGFFRRMLKEKVKP 298
>gi|242082329|ref|XP_002445933.1| hypothetical protein SORBIDRAFT_07g028280 [Sorghum bicolor]
gi|241942283|gb|EES15428.1| hypothetical protein SORBIDRAFT_07g028280 [Sorghum bicolor]
Length = 498
Score = 240 bits (613), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 118/270 (43%), Positives = 176/270 (65%), Gaps = 10/270 (3%)
Query: 62 VVTSFG------FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASW 115
+VT FG ARK+FDE+P RN V+WN M++GY+ +G + AR+ F+ MP ++V SW
Sbjct: 230 MVTGFGRHGLLPLARKMFDEMPIRNIVSWNAMLRGYAMNGEMDVARELFDVMPEKDVVSW 289
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
+ MI+ Y AG Y L+LFR M S+ + P+++T+ +VLS C+HL L G+ AH F
Sbjct: 290 TCMISGYAQAGRYAQTLELFRTMQSHGDIRPNEVTMVSVLSACAHL--TALEEGRWAHVF 347
Query: 176 IVKNEWELNEQ--IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE 233
I K++ L+ + + L+DMYAKCG A +F ++++NV +W ALI G A +
Sbjct: 348 IDKHKMVLDNEFNLGAALIDMYAKCGRTDLATKIFHSLDQKNVSAWNALITGLAVNSDAR 407
Query: 234 DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293
+ +FE M+ + KP+++TF VLTAC H GLVDEGR+YF+ + ++P ++HYGCM
Sbjct: 408 RCIDVFEQMKMSEEKPDDITFVSVLTACAHAGLVDEGRQYFQSMSSACGVQPELKHYGCM 467
Query: 294 VDLFGKAGFLEEAYEVIRTMRLEPNVIIWG 323
VDL G+AG L+EA E+IR M + P+V + G
Sbjct: 468 VDLLGRAGLLDEAEELIRGMPMAPDVKLLG 497
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 98/338 (28%), Positives = 162/338 (47%), Gaps = 35/338 (10%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVI-HHLHSHILKLGFISHVYVATSLLHEYV 62
FS + R D F+ ++KS + ++ +++ + GF++ +V SLL Y
Sbjct: 80 FSSLLRSGYLPDHFTFPPLVKSASRLSSFPRTGAQVYAQAARRGFLADTFVVNSLLAMYA 139
Query: 63 V-TSFGFARKLFDELPE-RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
R +F+ E + V+WNT++ GY+K G + AR F+ MP RN SWS M+
Sbjct: 140 AFRDTASMRAVFESCAEVADVVSWNTVVFGYAKCGEIGNARRVFDEMPHRNGVSWSVMVG 199
Query: 121 AYLNAGAYDPGLKLFREM--ISNEGLTPDQMTIGAVLSGCSHLGSVGL--LMGKSAHGFI 176
AY AG D ++F M I +T + M G G GL L K
Sbjct: 200 AYAAAGELDVAREMFDRMPAIGRNIITWNLMVTG--------FGRHGLLPLARKMFDEMP 251
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
++N N ++ YA G + A +F++M E++V+SWT +I G A G L
Sbjct: 252 IRNIVSWNA-----MLRGYAMNGEMDVARELFDVMPEKDVVSWTCMISGYAQAGRYAQTL 306
Query: 237 SLFEMMQATG-VKPNEMTFTGVLTACVHTGLVDEGR-------KYFKMIDEEYDLEPRIQ 288
LF MQ+ G ++PNE+T VL+AC H ++EGR K+ ++D E++L
Sbjct: 307 ELFRTMQSHGDIRPNEVTMVSVLSACAHLTALEEGRWAHVFIDKHKMVLDNEFNLG---- 362
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
++D++ K G + A ++ ++ + NV W + +
Sbjct: 363 --AALIDMYAKCGRTDLATKIFHSLD-QKNVSAWNALI 397
>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 600
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 141/458 (30%), Positives = 231/458 (50%), Gaps = 76/458 (16%)
Query: 3 LFSQM-HRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+FS M HR DSF+ ++K+ + + + +HSH++KLG I YV +L+ Y
Sbjct: 111 VFSAMPHR-----DSFTYSFLIKALSS-AGVAPLRAVHSHVVKLGSIEDTYVGNALIDAY 164
Query: 62 VVTSFGF---------------------------------ARKLFDELPERNAVTWNTMI 88
GF AR++FDE+ E++ V+WNT++
Sbjct: 165 SKNG-GFSDASKVFEEMPRRDVVSWNSAMAAMVRQGEVEGARRMFDEMLEKDTVSWNTLL 223
Query: 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM---------- 138
GY+K+G+V EA F+ MP RNV SWS +++ Y G + +F +M
Sbjct: 224 DGYTKAGDVEEAFKLFQCMPERNVVSWSTVVSGYCKKGDMEMARVIFDKMPTKNLVTWTI 283
Query: 139 ----ISNEGLTP----------------DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
+ GL D + ++L+ C+ GS+ L GK H ++
Sbjct: 284 MVSACAQNGLVEEAGKLFTQMKEASVELDVAAVVSILAACAESGSLAL--GKRIHRYVRT 341
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFEL-MEERNVISWTALICGSAHRGYSEDALS 237
+ + + L+DM+ KCG + A VF+ + E++ +SW +I G A G+ + AL
Sbjct: 342 RQLGRSTHVCNALIDMFCKCGCINRADYVFDTEIVEKDSVSWNTIIGGFAMHGHGDKALD 401
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
F M+ G P+ +T VL+AC H G V+EGR+YF ++ +Y + P+I+HYGCM+DL
Sbjct: 402 FFAQMKLQGFCPDAVTMINVLSACTHMGFVEEGRRYFANMERDYGVVPQIEHYGCMIDLL 461
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
G+ G ++EA ++I++M +PN +IWGS L+AC+ HK + AE + + L ++P N G
Sbjct: 462 GRGGLIKEAVDLIKSMPWDPNEVIWGSLLSACRLHKNVEYAEIAVNE-LSKLQPSNAGN- 519
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++ +Y KW + R M +K+ GSS I
Sbjct: 520 YAVLSSIYAEAGKWSDMAKARMQMKGTGSQKSSGSSWI 557
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 97/395 (24%), Positives = 158/395 (40%), Gaps = 73/395 (18%)
Query: 9 RQSVPSDSFSILHILKSCTHFNNLTVIHHL---HSHILKLGFISHVYVATSLLHEYVV-T 64
R + PS + L S H L +HHL H+ +LK G A+ LL Y +
Sbjct: 13 RWAAPSQRRLVEQHLASLPH--GLPRLHHLQELHAQLLKHGLHLDPVAASKLLSSYALHR 70
Query: 65 SFGFARKLFDELPERNAVTW--NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
+R +F P +A T+ NT+++ Y+ + EA F MP R+ ++S +I A
Sbjct: 71 RLPASRGVFASFPNPHATTFLPNTLLRAYALNALPREAVAVFSAMPHRDSFTYSFLIKAL 130
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVG-------------LLMG 169
+AG L+ + G D A++ S G ++
Sbjct: 131 SSAGVAP--LRAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFSDASKVFEEMPRRDVVSW 188
Query: 170 KSAHGFIVK-----------NEWELNEQIA-TILVDMYAKCGFLKYALMVFELMEERNVI 217
SA +V+ +E + ++ L+D Y K G ++ A +F+ M ERNV+
Sbjct: 189 NSAMAAMVRQGEVEGARRMFDEMLEKDTVSWNTLLDGYTKAGDVEEAFKLFQCMPERNVV 248
Query: 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI 277
SW+ ++ G +G E A +F+ M N +T+T +++AC GLV+E K F +
Sbjct: 249 SWSTVVSGYCKKGDMEMARVIFDKMPTK----NLVTWTIMVSACAQNGLVEEAGKLFTQM 304
Query: 278 DE---EYD------------------LEPRIQHY-------------GCMVDLFGKAGFL 303
E E D L RI Y ++D+F K G +
Sbjct: 305 KEASVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNALIDMFCKCGCI 364
Query: 304 EEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
A V T +E + + W + + H D A
Sbjct: 365 NRADYVFDTEIVEKDSVSWNTIIGGFAMHGHGDKA 399
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 114/254 (44%), Gaps = 14/254 (5%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+LF+QM SV D +++ IL +C +L + +H ++ +V +L+ +
Sbjct: 299 KLFTQMKEASVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNALIDMF 358
Query: 62 V-VTSFGFARKLFD-ELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR----NVASW 115
A +FD E+ E+++V+WNT+I G++ G+ +A DFF +M L+ + +
Sbjct: 359 CKCGCINRADYVFDTEIVEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFCPDAVTM 418
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
+++A + G + G + F M + G+ P G ++ LG GL+ K A
Sbjct: 419 INVLSACTHMGFVEEGRRYFANMERDYGVVPQIEHYGCMI---DLLGRGGLI--KEAVDL 473
Query: 176 IVKNEWELNEQIATILVD---MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
I W+ NE I L+ ++ + + A+ ++ N ++ L A G
Sbjct: 474 IKSMPWDPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSSIYAEAGKW 533
Query: 233 EDALSLFEMMQATG 246
D M+ TG
Sbjct: 534 SDMAKARMQMKGTG 547
>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
Length = 688
Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 135/403 (33%), Positives = 220/403 (54%), Gaps = 13/403 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFI-SHVYVATSLLH 59
+ LF +M D ++ ++ +C +H+H++K + + + +L+
Sbjct: 237 LMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVD 296
Query: 60 EYVVTSFGF-ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y + AR +FD +P R+ V+ +++ GY+KS NV +A+ F +M +NV +W+ +
Sbjct: 297 MYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVL 356
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
IAAY G + ++LF ++ + + P T G VL+ C ++ L +G+ AH ++K
Sbjct: 357 IAAYAQNGEEEEAIRLFVQL-KRDSIWPTHYTYGNVLNACGNIAD--LQLGQQAHVHVLK 413
Query: 179 NEW------ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
+ E + + LVDMY K G + VFE M R+ +SW A+I G A G +
Sbjct: 414 EGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRA 473
Query: 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC 292
+DAL LFE M + P+ +T GVL+AC H+GLVDEGR+YF + E++ + P HY C
Sbjct: 474 KDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTC 533
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE 352
MVDL G+AG L+EA E+I M +EP+ ++W S L AC+ HK ++ E + + P+
Sbjct: 534 MVDLLGRAGHLKEAEELINDMPMEPDSVLWASLLGACRLHKNVELGEWTAGRLFEL-DPQ 592
Query: 353 NDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
N G + L+ ++Y KW RVR+ M ++ V K G S I
Sbjct: 593 N-SGPYVLLSNMYAEMGKWAEVFRVRRSMKDRGVSKQPGCSWI 634
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 97/351 (27%), Positives = 160/351 (45%), Gaps = 38/351 (10%)
Query: 31 NLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFDELPERNAVTWNTMIK 89
NL+ H+ ILK ++ +L+ Y + AR++FDE+P RN ++N ++
Sbjct: 32 NLSGARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLS 91
Query: 90 GYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAG---AYDPGLKLFREMISNEGLTP 146
Y++ G EAR FE +P + S++A++AA G A D L+ M +++
Sbjct: 92 AYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAAD-ALRFLAAMHADD-FVL 149
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
+ + + LS C+ G+ HG + ++ + I + LVDMYAKC + A
Sbjct: 150 NAYSFASALSACA--AEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARR 207
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
VF+ M ERNV+SW +LI G +AL LF M A G P+E+T + V++AC
Sbjct: 208 VFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAA 267
Query: 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY------------------- 307
EGR+ + + L + +VD++ K G EA
Sbjct: 268 DREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILT 327
Query: 308 -----------EVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALR 347
+V+ + +E NVI W +AA ++ + + A R+ Q R
Sbjct: 328 GYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKR 378
>gi|449518887|ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g35030, mitochondrial-like [Cucumis sativus]
Length = 649
Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 118/329 (35%), Positives = 198/329 (60%), Gaps = 6/329 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A KLF+++PER +WNTMI G+ ++G + A DFF +M +NV +W+A+I+ ++ G
Sbjct: 272 AFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRS 331
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ LK+F EM + + P++ T +VL CS L + L G+ H I K ++ +
Sbjct: 332 EEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAA--LCEGQQIHQIISKTVYQEVADVV 389
Query: 189 TILVDMYAKCGFLKYALMVFE--LMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
+ L++MY+KCG L+ A +F+ + R+V+SW +I AH G+ A+SLF+ MQA G
Sbjct: 390 SALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALG 449
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
+P+ +T+ +L+AC H GLVDEG K F+ + + ++ R H+ C+VDLFG+AG L+EA
Sbjct: 450 FRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHFTCLVDLFGRAGRLQEA 509
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366
++ I+ + ++P+ +W + LA C H D+ ++ + L +PEN G + ++ ++Y
Sbjct: 510 FDFIKGLEVKPSASVWAALLAGCNVHGHIDLG-KLTAEKLLETEPEN-AGTYLVLSNIYA 567
Query: 367 MNEKWEGAERVRKLMLNQNVRKARGSSVI 395
KW A VR M ++ ++K G S I
Sbjct: 568 STGKWREAAGVRMKMKDKGLKKQPGCSWI 596
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 150/310 (48%), Gaps = 28/310 (9%)
Query: 48 ISHVYVATSLLHEYVV-TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFER 106
I +V T+L+ YV AR+LFD +P +N ++WNTMI+GY++ G + +A D FE
Sbjct: 126 IKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEX 185
Query: 107 MPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGL 166
MP RNV SW+ +I A++ D +LF M + ++ M G LS + L
Sbjct: 186 MPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAG--LSKNGRIDDARL 243
Query: 167 LMGK---------------SAHGFIVKNEWELNEQIA-------TILVDMYAKCGFLKYA 204
L K A + ++L EQ+ ++ + + G L+ A
Sbjct: 244 LFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERA 303
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLF-EMMQATGVKPNEMTFTGVLTACVH 263
+ F M +NV++WTA+I G G SE+AL +F EM A VKPNE TF VL AC
Sbjct: 304 VDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSK 363
Query: 264 TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRL-EPNVIIW 322
+ EG++ ++I + E +++++ K G LE A ++ + +V+ W
Sbjct: 364 LAALCEGQQIHQIISKTVYQEV-ADVVSALINMYSKCGELELARKIFDDGSIGHRDVVSW 422
Query: 323 GSFLAACKEH 332
+AA H
Sbjct: 423 NGMIAAYAHH 432
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 134/313 (42%), Gaps = 50/313 (15%)
Query: 80 NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI 139
N N +I K G + EAR FE MP R+V SW+A+I Y+ G + LF
Sbjct: 65 NVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFDR-- 122
Query: 140 SNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG 199
N+ + + +T A++SG + + VKN N +++ YA+ G
Sbjct: 123 -NDAI-KNVVTWTALVSGYVRWNRIEEAR-RLFDAMPVKNVISWN-----TMIEGYARKG 174
Query: 200 FLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLT 259
++ AL +FE M ERNV+SW +I R ++A LF M V +++T ++
Sbjct: 175 WIDQALDLFEXMPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDV----ISWTTMVA 230
Query: 260 ACVHTGLVDEGRKYF-KM--------------------IDEEYDL-----EPRIQHYGCM 293
G +D+ R F KM +DE + L E + + M
Sbjct: 231 GLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTM 290
Query: 294 VDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIK-----QALRM 348
+ F + G LE A + M NV+ W + ++ H Q +E +K QA
Sbjct: 291 ITGFIQNGKLERAVDFFYKMS-NKNVVTWTAVISG---HVQDGRSEEALKIFSEMQAANN 346
Query: 349 VKPENDGGVFTLI 361
VKP N+G +++
Sbjct: 347 VKP-NEGTFVSVL 358
>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
Length = 587
Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 120/301 (39%), Positives = 183/301 (60%), Gaps = 5/301 (1%)
Query: 95 GNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAV 154
G +A F MP R+V SW++M+A Y G + L LF +M + G+ P + T+ ++
Sbjct: 162 GKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRA-VGVKPTEATVVSL 220
Query: 155 LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER 214
LS C+HLG+ L G H +I N E+N + T LVDMYAKCG + A VF ME +
Sbjct: 221 LSACAHLGA--LDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESK 278
Query: 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF 274
+V++W +I G A G+ ++A LF+ M+ GV+PN++TF +L+AC H G+VDEG+K
Sbjct: 279 DVLAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLL 338
Query: 275 KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
+ Y +EP+++HYGC++DL +AG LEEA E+I TM +EPN G+ L C+ H
Sbjct: 339 DCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGN 398
Query: 335 FDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSV 394
F++ E V K+ + + +P + G + L+ ++Y +KW+ A +VR LM + K G SV
Sbjct: 399 FELGEMVGKRLINL-QPCH-SGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSV 456
Query: 395 I 395
I
Sbjct: 457 I 457
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 101/230 (43%), Gaps = 29/230 (12%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF QM V +++ +L +C H L HLH++I + V T+L+
Sbjct: 199 LALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDM 258
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA----SW 115
Y A ++F+ + ++ + WNT+I G + G+V EA+ F+ M V ++
Sbjct: 259 YAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITF 318
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLG------------- 162
AM++A +AG D G KL M S+ G+ P G V+ + G
Sbjct: 319 VAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMP 378
Query: 163 ------SVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
++G L+G G + +EL E + L+++ C +Y L+
Sbjct: 379 MEPNPCALGALLG----GCRIHGNFELGEMVGKRLINLQP-CHSGRYILL 423
>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
Length = 728
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 137/395 (34%), Positives = 222/395 (56%), Gaps = 7/395 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LFS+M ++ + L + L+ ++H H+ K+G V++ +SL+
Sbjct: 301 LKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDL 360
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y R +FD + E+N V WN+M+ GYS +G + E + FE +P +N SW +I
Sbjct: 361 YCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTII 420
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A YL + L++F ++ + G TP++ T +VL C+ + S L G + HG I+K
Sbjct: 421 AGYLENEQCEKVLEVFNTLLVS-GQTPNKSTFSSVLCACASIAS--LDKGMNVHGKIIKL 477
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + + T L DMYAKCG + + VFE M E+N ISWT +I G A G++ ++L LF
Sbjct: 478 GIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILF 537
Query: 240 EMMQATG-VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
E M+ T V PNE+ VL AC H GLVD+G YF +++ Y ++P+ +HY C+VDL
Sbjct: 538 EEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLS 597
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
++G L EA E IRT+ +P W + L+ CK++K +AER K+ ++ EN+ +
Sbjct: 598 RSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQLA--ENNSAGY 655
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
L+ ++Y +W +RKLM + ++K+ G S
Sbjct: 656 VLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCS 690
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 110/384 (28%), Positives = 173/384 (45%), Gaps = 73/384 (19%)
Query: 13 PSDSF-----SILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY------ 61
P SF + + +LK ++ +T + LH+H++K GF S Y+A LL Y
Sbjct: 13 PKKSFRAYAQTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKF 72
Query: 62 -----VVTSFGF---------------------ARKLFDELPERNAVTWNTMIKGYSKSG 95
+V F AR LFDE+PERN V+W+ +I G K G
Sbjct: 73 AEIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYG 132
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155
V E+ +FER P +NV SW+A I+ ++ G LKLF ++ + G+ P+ +T +V+
Sbjct: 133 RVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLES-GVRPNDVTFTSVV 191
Query: 156 SGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA--------------------------- 188
C LG GL G S G +VK +E ++
Sbjct: 192 RACGELGDFGL--GMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRD 249
Query: 189 ----TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQA 244
T ++D Y + G L+ A +F+ M ERN ISW+A+I + GY+E+AL LF M
Sbjct: 250 VVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQ 309
Query: 245 TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLE 304
G KPN F L+A + G + + ++ + ++DL+ K G +
Sbjct: 310 EGFKPNISCFACTLSALASLRALSAGINIHGHVT-KIGIDKDVFIGSSLIDLYCKCGKPD 368
Query: 305 EAYEVIRTMRLEPNVIIWGSFLAA 328
+ ++ + LE NV+ W S +
Sbjct: 369 DG-RLVFDLILEKNVVCWNSMVGG 391
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 166/357 (46%), Gaps = 43/357 (12%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH- 59
++LF ++ V + + ++++C + + + ++K GF ++ V+ SL+
Sbjct: 169 LKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITL 228
Query: 60 EYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
+ AR++FD + +R+ V+W ++ Y ++G++ EAR F+ MP RN SWSAMI
Sbjct: 229 SLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMI 288
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A Y +G + LKLF +M+ EG P+ LS + L + L G + HG + K
Sbjct: 289 ARYSQSGYAEEALKLFSKMV-QEGFKPNISCFACTLSALASLRA--LSAGINIHGHVTKI 345
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRG--------- 230
+ + I + L+D+Y KCG +VF+L+ E+NV+ W +++ G + G
Sbjct: 346 GIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEELF 405
Query: 231 ----------------------YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
E L +F + +G PN+ TF+ VL AC +D
Sbjct: 406 ELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLD 465
Query: 269 EGRKYFKMIDE---EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
+G I + +YD I + D++ K G + + +V M E N I W
Sbjct: 466 KGMNVHGKIIKLGIQYD----IFVGTALTDMYAKCGDIGSSKQVFERMP-EKNEISW 517
>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
Length = 672
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 130/402 (32%), Positives = 221/402 (54%), Gaps = 37/402 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L+ M + +V D +++ ++ +C ++ + LHS I GF S++ +
Sbjct: 182 LELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIV------ 235
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
N +I YSK G V A F+ + ++V SW+ +I
Sbjct: 236 ------------------------NVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIG 271
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
+ + Y L LF+EM+ + G +P+ +T+ +VL C+HLG++ + G+ H +I K
Sbjct: 272 GHTHMNLYKEALLLFQEMLRS-GESPNDVTMLSVLPACAHLGAIDI--GRWIHVYINKRL 328
Query: 181 WELNE--QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ + T L+DMYAKCG ++ A VF+ M R++ SW A+I G A G + A L
Sbjct: 329 KGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDL 388
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F M+ G+ P+++TF G+L+AC H+G++D GR F+ + ++Y + P+++HYGCM+DL G
Sbjct: 389 FSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLG 448
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
G +EA E+IRTM +EP+ +IW S L ACK H ++ E Q L ++PEN G +
Sbjct: 449 HCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESY-AQNLIKIEPENPGS-Y 506
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLSV 400
L+ ++Y +W+ ++R L+ ++ ++KA G S I SV
Sbjct: 507 VLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSV 548
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 108/352 (30%), Positives = 188/352 (53%), Gaps = 10/352 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L+ M + +S+S +LKSC L +H H+LKLG+ +YV TSL+
Sbjct: 50 LKLYVCMISLGLLPNSYSFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISM 109
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A K+FD R+ V++ +I GY+ G + AR F+ + +++V SW+AMI
Sbjct: 110 YAQNGRLEDAHKVFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMI 169
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y+ + L+L+++M+ + PD+ T+ V+S C+ GS+ L G+ H +I +
Sbjct: 170 SGYVETCNFKEALELYKDMMKTN-VKPDESTMVTVVSACAQSGSIEL--GRQLHSWIEDH 226
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ N +I +L+D+Y+KCG ++ A +F+ + +++VISW LI G H ++AL LF
Sbjct: 227 GFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLF 286
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD-LEPRIQHYGCMVDLFG 298
+ M +G PN++T VL AC H G +D GR I++ + ++D++
Sbjct: 287 QEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYA 346
Query: 299 KAGFLEEAYEVIRTMRLEP----NVIIWGSFLAACKEHKQFDMAERVIKQAL 346
K G +E A +V +M N +I+G F K + FD+ ++ K +
Sbjct: 347 KCGDIEAAKQVFDSMLTRSLSSWNAMIFG-FAMHGKANAAFDLFSKMRKNGI 397
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 83/327 (25%), Positives = 147/327 (44%), Gaps = 67/327 (20%)
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
+A +F+ + E N + WNTM +G++ + + A
Sbjct: 15 LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTA------------------------- 49
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
LKL+ MIS GL P+ + +L C+ S L+ G+ HG ++K ++L+
Sbjct: 50 ------LKLYVCMIS-LGLLPNSYSFPFLLKSCAK--SKALIEGQQIHGHVLKLGYDLDM 100
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS------------- 232
+ T L+ MYA+ G L+ A VF+ R+V+S+TALI G A RGY
Sbjct: 101 YVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVK 160
Query: 233 ------------------EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF 274
++AL L++ M T VKP+E T V++AC +G ++ GR+
Sbjct: 161 DVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLH 220
Query: 275 KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
I E++ I+ ++DL+ K G +E A + + + + +VI W + +
Sbjct: 221 SWI-EDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLA-KKDVISWNTLIGGHTHMNL 278
Query: 335 FDMAERVIKQALRMVKPENDGGVFTLI 361
+ A + ++ LR + ND + +++
Sbjct: 279 YKEALLLFQEMLRSGESPNDVTMLSVL 305
>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 139/397 (35%), Positives = 208/397 (52%), Gaps = 32/397 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLG-FISHVYVATSLLH 59
+++F +M + D ++ ++ +C L +H+ ++K F + + +L+
Sbjct: 233 LEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVD 292
Query: 60 EYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y S AR++FD + RN V+ +M+ GY+++ +V AR F +M RNV SW+A+
Sbjct: 293 MYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNAL 352
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
IA Y G + L+LFR ++ E + P T G +L + +G S
Sbjct: 353 IAGYTQNGENEEALRLFR-LLKRESIWPTHYTFGNLLKS-------DIFVGNS------- 397
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
L+DMY KCG ++ VFE M+ER+ +SW A+I G A GY +AL +
Sbjct: 398 ------------LIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQI 445
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F M G KP+ +T GVL AC H GLV+EGR YF + EE+ L P HY CMVDL G
Sbjct: 446 FRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSM-EEHGLIPLKDHYTCMVDLLG 504
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG L EA +I M + P+ ++WGS LAACK H +M + ++ L + P N G +
Sbjct: 505 RAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLE-IDPWNSGP-Y 562
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y +W RVRKLM Q V K G S I
Sbjct: 563 VLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWI 599
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/307 (28%), Positives = 153/307 (49%), Gaps = 5/307 (1%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLF 73
+S +L SC + +H+ IL F +++ L+ Y ARKLF
Sbjct: 14 NSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLF 73
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
D +P+RN TWN++I +KSG + EA F MP + SW++M++ + ++ L+
Sbjct: 74 DRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLE 133
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
F +M E ++ + G+ LS C+ G + L MG H + K+ + + + + L+D
Sbjct: 134 YFVKM-HREDFLLNEYSFGSALSACA--GLMDLNMGTQVHALVSKSRYSTDVYMGSALID 190
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
MY+KCG + A VF M ERN+++W +LI G + +AL +F M +G++P+E+T
Sbjct: 191 MYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVT 250
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
V++AC + EG + + + + +VD++ K + EA V M
Sbjct: 251 LASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRM 310
Query: 314 RLEPNVI 320
+ NV+
Sbjct: 311 SIR-NVV 316
>gi|125587880|gb|EAZ28544.1| hypothetical protein OsJ_12524 [Oryza sativa Japonica Group]
Length = 559
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 127/392 (32%), Positives = 223/392 (56%), Gaps = 8/392 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILK-LGFISH-VYVATSLL 58
++ F M + + D ++ + +L C + +H +++ +G + ++ +LL
Sbjct: 97 LRFFRGMASRGIGVDQYTAVALLACCGRLKKAVLGRSVHGVVVRRIGVADRGLILSNALL 156
Query: 59 HEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
Y A ++FDE ER+ ++WNTM+ G++ +G + A +F P R++ SW+A
Sbjct: 157 DMYAKCGEMNTAMRVFDEAGERDGISWNTMVAGFANAGLLDLASKYFGEAPARDIISWNA 216
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
++A Y + + LF +M+++ + PD++T ++S + G+ L +S HG++V
Sbjct: 217 LLAGYARYEEFSATMILFHDMLASS-VIPDKVTAVTLISAVAGKGT--LNSARSVHGWVV 273
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
K + +A+ LVDMY KCG +K A VFE +++V WTA+I G A G+ + AL
Sbjct: 274 KEHGTQDSFLASALVDMYCKCGSIKLAYAVFEKAVDKDVTLWTAMISGLAFHGHGDVALD 333
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LF MQA G +PN +T VL+AC H GL DEG K F + + +++EP ++H+GCMVDL
Sbjct: 334 LFWKMQAEGTEPNGVTLVAVLSACSHAGLFDEGCKIFDTLKQRFNIEPGVEHFGCMVDLL 393
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
++G L +A ++ R M ++P+ IWGS L+A + ++AE K+ L ++P +GG
Sbjct: 394 ARSGRLSDAVDLARRMPMKPSRSIWGSILSASSACQNTEVAEIASKELL-CLEPAEEGG- 451
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKA 389
+ L+ ++Y +W + VR+ M + VRK+
Sbjct: 452 YVLLSNMYAAEGQWNYSNEVRENMERKGVRKS 483
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 89/366 (24%), Positives = 155/366 (42%), Gaps = 69/366 (18%)
Query: 6 QMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS 65
M S+ D + L +LKS +V +H+H++ G S VY+
Sbjct: 2 SMLASSIHPDEQTFLSLLKS-VDAERRSVGKQVHAHVVVTGLHSRVYLR----------- 49
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
N++IK Y +G+V A F P + S + M++ Y+
Sbjct: 50 -------------------NSLIKMYLDAGDVEAAEAMFRCAPTADAVSCNIMLSGYVKG 90
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
G L+ FR M S G+ DQ T A+L+ C L ++G+S HG +V+ +
Sbjct: 91 GCSGKALRFFRGMAS-RGIGVDQYTAVALLACCGRLKKA--VLGRSVHGVVVRRIGVADR 147
Query: 186 Q--IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGY------------ 231
++ L+DMYAKCG + A+ VF+ ER+ ISW ++ G A+ G
Sbjct: 148 GLILSNALLDMYAKCGEMNTAMRVFDEAGERDGISWNTMVAGFANAGLLDLASKYFGEAP 207
Query: 232 SEDALS-------------------LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK 272
+ D +S LF M A+ V P+++T +++A G ++ R
Sbjct: 208 ARDIISWNALLAGYARYEEFSATMILFHDMLASSVIPDKVTAVTLISAVAGKGTLNSARS 267
Query: 273 YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
+ +E+ + +VD++ K G ++ AY V ++ +V +W + ++ H
Sbjct: 268 VHGWVVKEHGTQDSFL-ASALVDMYCKCGSIKLAYAVFEKA-VDKDVTLWTAMISGLAFH 325
Query: 333 KQFDMA 338
D+A
Sbjct: 326 GHGDVA 331
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 68/179 (37%), Gaps = 2/179 (1%)
Query: 168 MGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSA 227
+GK H +V + L+ MY G ++ A +F + +S ++ G
Sbjct: 29 VGKQVHAHVVVTGLHSRVYLRNSLIKMYLDAGDVEAAEAMFRCAPTADAVSCNIMLSGYV 88
Query: 228 HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR- 286
G S AL F M + G+ ++ T +L C GR ++ + R
Sbjct: 89 KGGCSGKALRFFRGMASRGIGVDQYTAVALLACCGRLKKAVLGRSVHGVVVRRIGVADRG 148
Query: 287 IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQA 345
+ ++D++ K G + A V E + I W + +A D+A + +A
Sbjct: 149 LILSNALLDMYAKCGEMNTAMRVFDEAG-ERDGISWNTMVAGFANAGLLDLASKYFGEA 206
>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 695
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 137/431 (31%), Positives = 221/431 (51%), Gaps = 41/431 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF +M R+ ++I+ IL + ++L +H I+ F+ +V++ +L
Sbjct: 140 LELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDM 199
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGN----------------------- 96
Y AR LFD L ++N V+WN MI GY+K+G
Sbjct: 200 YAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTM 259
Query: 97 ------------VCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
V EAR F +++ W+AM+ Y G + L LF EM+ E +
Sbjct: 260 STIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLL-EHI 318
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
PD T+ +V+S C+ L S L G++ HG + N +++ L+DMY+KCGF+ A
Sbjct: 319 EPDSYTLSSVVSSCAKLAS--LHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDA 376
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
VF LM RNV+SW A+I G A G+ +DAL LFE M KP+ +TF G+L+AC+H
Sbjct: 377 RSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHC 436
Query: 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324
+++G++YF I ++ + P + HY CMV+L G+ G +E+A +I+ M +P+ +IW +
Sbjct: 437 NWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWST 496
Query: 325 FLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384
L+ C AE V + L + P + ++ ++Y +W+ VR LM ++
Sbjct: 497 LLSICSTKGDIVNAE-VAARHLFELDP-TIAVPYIMLSNMYASMGRWKDVASVRNLMKSK 554
Query: 385 NVRKARGSSVI 395
NV+K G S I
Sbjct: 555 NVKKFAGFSWI 565
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 106/385 (27%), Positives = 187/385 (48%), Gaps = 20/385 (5%)
Query: 9 RQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGF-ISHVYVATSLLHEYVVTSFG 67
R + S++++ ++ C N + L SH+ F + ++ LLH Y FG
Sbjct: 17 RSTATSEAYT--QLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYA--KFG 72
Query: 68 F---ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLN 124
A+ LFD++ +R+ +WN ++ Y+KSG++ + F+RMP R+ S++ IA +
Sbjct: 73 KLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSG 132
Query: 125 AGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN 184
L+LF+ M EG P + TI ++L+ + L L GK HG I+ + N
Sbjct: 133 NSCPQESLELFKRM-QREGFEPTEYTIVSILNASAQLSD--LRYGKQIHGSIIVRNFLGN 189
Query: 185 EQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQA 244
I L DMYAKCG ++ A +F+ + ++N++SW +I G A G E + L M+
Sbjct: 190 VFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRL 249
Query: 245 TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLE 304
+G P+++T + ++ A G VDE R+ F E+ I + M+ + K G E
Sbjct: 250 SGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEK-----DIVCWTAMMVGYAKNGREE 304
Query: 305 EAYEVIRTMRL---EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
+A + M L EP+ S +++C + + V +++ + N+ V + +
Sbjct: 305 DALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSI-LAGLNNNLLVSSAL 363
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNV 386
D+Y+ + A V LM +NV
Sbjct: 364 IDMYSKCGFIDDARSVFNLMPTRNV 388
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 122/274 (44%), Gaps = 46/274 (16%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF++M + + DS+++ ++ SC +L +H + G +++ V+++L+ Y
Sbjct: 309 LFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYS 368
Query: 63 VTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR----NVASWSA 117
F AR +F+ +P RN V+WN MI G +++G+ +A + FE M + + ++
Sbjct: 369 KCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIG 428
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVG------------ 165
+++A L+ + G + F + + G+TP T+ + LG G
Sbjct: 429 ILSACLHCNWIEQGQEYFDSITNQHGMTP---TLDHYACMVNLLGRTGRIEQAVALIKNM 485
Query: 166 -----------LLMGKSAHGFIVKNE------WELNEQIAT---ILVDMYAKCGFLKYAL 205
LL S G IV E +EL+ IA +L +MYA G K
Sbjct: 486 AHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVA 545
Query: 206 MVFELMEERNV-----ISWTALICGSAHRGYSED 234
V LM+ +NV SW I HR SED
Sbjct: 546 SVRNLMKSKNVKKFAGFSWIE-IDNEVHRFTSED 578
>gi|387169573|gb|AFJ66232.1| hypothetical protein 34G24.32 [Capsella rubella]
Length = 598
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 128/387 (33%), Positives = 226/387 (58%), Gaps = 14/387 (3%)
Query: 13 PSDSFS--ILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG-FA 69
PS ++ + +L+SC +N + H+ + KLG+ ++ + S++ Y + FA
Sbjct: 89 PSSNYHRMLKQVLESCKTPSNSKCVLQAHAQVFKLGYGTYPSLLVSMVAAYRRCNLSYFA 148
Query: 70 RKL---FDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAG 126
R+L F L + T N +I+ K+G A+ R +NV +W+ MI Y+
Sbjct: 149 RRLLLWFLSLSPGVSNT-NIIIESLMKTGEYGLAKKVLRRASDQNVITWNLMIGGYVRNV 207
Query: 127 AYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ 186
Y+ LK + M+S + P++ + + L+ C+ LG L K H ++ ELN
Sbjct: 208 QYEEALKTLKNMLSFSDIKPNKFSFASALAACARLGD--LHHAKWVHSLMIDAGIELNTI 265
Query: 187 IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
+++ LVD+YAKCG ++ + VF ++ +V W A+I G A G + +A+ +F M+A
Sbjct: 266 LSSALVDVYAKCGDIETSREVFYSVKWNDVSIWNAMITGFATHGLATEAIRVFSEMEAEH 325
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
V P+ +TF G+LTAC H GL++EG+++F ++ + + ++P+++HYG MVDL G+AG ++EA
Sbjct: 326 VSPDSITFLGILTACSHCGLLEEGKEFFGLMSQRFSIQPKLEHYGAMVDLLGRAGQVKEA 385
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366
Y++I +M +EP+V+IW S L++ + +K ++ E I Q L K G + L+ ++Y+
Sbjct: 386 YDLIESMPIEPDVVIWRSLLSSARTYKNPELGEIAI-QNLSKAK----SGDYVLLSNIYS 440
Query: 367 MNEKWEGAERVRKLMLNQNVRKARGSS 393
+KWE A++VR+LM + +RKA+G S
Sbjct: 441 STKKWENAQKVRELMTKEGIRKAKGKS 467
>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 572
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 133/395 (33%), Positives = 216/395 (54%), Gaps = 34/395 (8%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ M + V D F+ +LK+C+ + +H H+ K+G
Sbjct: 85 LYVDMIERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGL--------------- 129
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
E + + N++I Y K G + A D F M ++VASWSA+I A+
Sbjct: 130 ---------------EGDVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAH 174
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
++ L L +M S ++ T+ VLS C+HLGS L GK HG +++N E
Sbjct: 175 ACVEMWNECLMLLGKMSSEGRCRVEESTLVNVLSACTHLGSPDL--GKCIHGILLRNISE 232
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
LN + T L+DMY K G L+ L VF+ M E+N S+T +I G A G ++AL +F M
Sbjct: 233 LNVVVKTSLIDMYVKSGCLEKGLRVFKNMSEKNRYSYTVMISGLAIHGRGKEALKVFSEM 292
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
G+ P+++ + GV +AC H GLV+EG + FK + E+ +EP +QHYGCMVDL G+ G
Sbjct: 293 IEEGLAPDDVVYVGVFSACSHAGLVEEGLQCFKSMQFEHKIEPTVQHYGCMVDLLGRFGM 352
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362
L+EAYE+I++M ++PN +IW S L+ACK H ++ ++ + L M+ +N+ G + ++
Sbjct: 353 LKEAYELIKSMSIKPNDVIWRSLLSACKVHHNLEIG-KIAAENLFMLN-QNNSGDYLVLA 410
Query: 363 DLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
++Y +KW+ ++R + +N+ + G S+I +
Sbjct: 411 NMYAKAQKWDDVAKIRTKLAERNLVQTPGFSLIEA 445
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 131/290 (45%), Gaps = 39/290 (13%)
Query: 28 HFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDELPERNAVTW 84
H N++ +H+H+LK G + ++L+ +T +G +A +F ++ E ++ +
Sbjct: 7 HNNHMEEFKQVHAHVLKCGIFFDTFCMSNLVATCALTKWGSMDYACSIFTQIDEPSSFDY 66
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
NTMI+G NV N + L L+ +MI G+
Sbjct: 67 NTMIRG--------------------NV-----------NDMKLEEALLLYVDMIE-RGV 94
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
PD+ T VL CS LG V G HG + K E + + L++MY KCG +K A
Sbjct: 95 EPDKFTYPFVLKACSLLGVVD--EGIQVHGHVFKMGLEGDVIVQNSLINMYGKCGEIKNA 152
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG-VKPNEMTFTGVLTACVH 263
VF M+E++V SW+A+I A + L L M + G + E T VL+AC H
Sbjct: 153 CDVFNGMDEKSVASWSAIIGAHACVEMWNECLMLLGKMSSEGRCRVEESTLVNVLSACTH 212
Query: 264 TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
G D G+ ++ E + ++D++ K+G LE+ V + M
Sbjct: 213 LGSPDLGKCIHGILLRNIS-ELNVVVKTSLIDMYVKSGCLEKGLRVFKNM 261
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 196 AKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT 255
K G + YA +F ++E + + +I G+ + E+AL L+ M GV+P++ T+
Sbjct: 43 TKWGSMDYACSIFTQIDEPSSFDYNTMIRGNVNDMKLEEALLLYVDMIERGVEPDKFTYP 102
Query: 256 GVLTACVHTGLVDEGRK----YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR 311
VL AC G+VDEG + FKM LE + +++++GK G ++ A +V
Sbjct: 103 FVLKACSLLGVVDEGIQVHGHVFKM-----GLEGDVIVQNSLINMYGKCGEIKNACDVFN 157
Query: 312 TMRLEPNVIIWGSFLAA 328
M E +V W + + A
Sbjct: 158 GMD-EKSVASWSAIIGA 173
>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 128/386 (33%), Positives = 213/386 (55%), Gaps = 38/386 (9%)
Query: 12 VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG--FA 69
+ + ++ +LK+C +L + +H ++K GF ++V +++H Y S G FA
Sbjct: 105 ISPNKYAFPFVLKACAGLRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFA 164
Query: 70 RKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYD 129
RKL F+ MP + +W+AMI Y G
Sbjct: 165 RKL-------------------------------FDEMPKLDPVTWTAMIGGYARLGQSA 193
Query: 130 PGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIAT 189
+ LFR+M G+ PD +T+ +VLS C+ LG+ L +GK +I K +++
Sbjct: 194 GAVGLFRKM-QIAGVCPDDVTMVSVLSACTDLGA--LELGKWIESYIEKERVLKTVELSN 250
Query: 190 ILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP 249
LVDM+AKCG + AL +F M +R ++SWT++I G A G +A+SLFE M+A+G+ P
Sbjct: 251 ALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVP 310
Query: 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEV 309
++ F G+L+AC H+GLV+ GR+YF + ++ + P+I+HYGCMVDL +AG + EA E
Sbjct: 311 EDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRAGLVTEALEF 370
Query: 310 IRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNE 369
+ M +EPN IIW + ++AC+ H + + E + KQ +R +P ++ + L+ ++Y
Sbjct: 371 VERMPIEPNPIIWRTLISACRVHGELKLGESISKQLIRN-EPMHESN-YVLLSNIYGKML 428
Query: 370 KWEGAERVRKLMLNQNVRKARGSSVI 395
WE ++R M + ++K GS++I
Sbjct: 429 DWEKKSKIRVAMGKKGIQKVPGSTMI 454
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/314 (27%), Positives = 153/314 (48%), Gaps = 35/314 (11%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPER 79
L IL++C N L + LH+HI+KLGF + + V+T F A D +P
Sbjct: 11 LDILQAC---NTLPKLAQLHTHIIKLGFQN---------NPLVLTKFTSASSNLDAIPYA 58
Query: 80 NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI 139
++ + +V +AR + + +S +I AY + + ++
Sbjct: 59 MSLVF-----------SVEDARVY-------DAFLFSTIIRAYAESSQSKHNAIFYYNLM 100
Query: 140 SNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC- 198
G++P++ VL C+ L + L GK+ HG +VK ++ + + +V MY C
Sbjct: 101 LGYGISPNKYAFPFVLKACAGLRDLNL--GKAVHGSLVKFGFDDDIFVQNTMVHMYCCCS 158
Query: 199 GFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL 258
G +++A +F+ M + + ++WTA+I G A G S A+ LF MQ GV P+++T VL
Sbjct: 159 GGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVL 218
Query: 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPN 318
+AC G ++ G+ I++E L+ ++ +VD+F K G +++A + R M +
Sbjct: 219 SACTDLGALELGKWIESYIEKERVLK-TVELSNALVDMFAKCGDVDKALGLFRNMS-KRT 276
Query: 319 VIIWGSFLAACKEH 332
++ W S + H
Sbjct: 277 IVSWTSVIVGLAMH 290
>gi|357444867|ref|XP_003592711.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481759|gb|AES62962.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 132/398 (33%), Positives = 226/398 (56%), Gaps = 9/398 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F +M R V D + ++K+ + +H+ I+K G S ++ SL+H
Sbjct: 99 LSIFLKMLRHGVAPDYLTYPFLVKASARLSKQKSGVSVHAQIIKTGHESDRFIQNSLIHM 158
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + +A K+F+ + +N V+WN+M+ GY+K G + A+ FE M R+V SWS+ I
Sbjct: 159 YASCGNIMWAHKVFESMQGKNLVSWNSMLDGYAKCGEMAMAQKVFESMQERDVRSWSSFI 218
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y+ AG Y + +F +M + G +++T+ +VLS C+HLG+ L G+ H +I+ N
Sbjct: 219 DGYVKAGEYREAMAVFEKMRA-VGPKANEVTMVSVLSACAHLGA--LQKGRMMHQYIIDN 275
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELME--ERNVISWTALICGSAHRGYSEDALS 237
+ + T LVDMYAKCG ++ AL VF + + +V W A+I G A G E++L
Sbjct: 276 LLPMTMVLQTSLVDMYAKCGAIEEALFVFRGISKSQTDVFIWNAMIGGLATHGLVEESLK 335
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LF+ MQ G++ +E+T+ +L AC H GLV E +F+ + + + P +HY CMVD+
Sbjct: 336 LFKEMQMAGIRSDEITYLCLLAACAHGGLVKEAWNFFESLVKR-GMTPTSEHYACMVDVL 394
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
+AG L AY+ I + +EP + G+ + C H+ FD+AE V ++ + + P NDG
Sbjct: 395 ARAGQLTTAYQFICQIPIEPTASMLGAIFSGCINHRNFDLAETVGRKLIEL-DPNNDGRY 453
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L ++Y + ++W+ ++ +R+ M + V+K+ G S +
Sbjct: 454 IGL-SNVYAVVKRWDDSKSMREAMERRGVKKSPGFSFV 490
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 159/335 (47%), Gaps = 35/335 (10%)
Query: 42 ILKLGFISHVYVATSLLHEYV----VTSFG---------FARKLFDELPERNAVTWNTMI 88
+L+L + + ++ L HEY + SF ++ ++F ++ +WN +I
Sbjct: 27 MLELKKLHAIGISYGLSHEYSFIFKILSFSALSNSGDIDYSYRVFSQISSPTIFSWNIII 86
Query: 89 KGYSKSGNVCEARDFFERMPLRNVA----SWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
+GYS S N + F +M VA ++ ++ A G+ + ++I G
Sbjct: 87 RGYSNSKNPIHSLSIFLKMLRHGVAPDYLTYPFLVKASARLSKQKSGVSVHAQIIKT-GH 145
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
D+ +++ + G++ + K KN N ++D YAKCG + A
Sbjct: 146 ESDRFIQNSLIHMYASCGNI-MWAHKVFESMQGKNLVSWNS-----MLDGYAKCGEMAMA 199
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
VFE M+ER+V SW++ I G G +A+++FE M+A G K NE+T VL+AC H
Sbjct: 200 QKVFESMQERDVRSWSSFIDGYVKAGEYREAMAVFEKMRAVGPKANEVTMVSVLSACAHL 259
Query: 265 GLVDEGRKYFK-MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIW 322
G + +GR + +ID + +Q +VD++ K G +EEA V R + + + +V IW
Sbjct: 260 GALQKGRMMHQYIIDNLLPMTMVLQ--TSLVDMYAKCGAIEEALFVFRGISKSQTDVFIW 317
Query: 323 GSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
+ + H +++++L++ K G+
Sbjct: 318 NAMIGGLATHG-------LVEESLKLFKEMQMAGI 345
>gi|413920230|gb|AFW60162.1| hypothetical protein ZEAMMB73_962137 [Zea mays]
Length = 516
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 145/406 (35%), Positives = 220/406 (54%), Gaps = 27/406 (6%)
Query: 10 QSVPSDSFSILHILKSCTHFNNLTVIHHL------------HSHILKLGFISHVYVATSL 57
S P D+F +L L+ + LT + + HS +L+LGF+SH ++ +L
Sbjct: 112 SSPPDDAFRLLSTLRQFHAPDRLTFLPLIGCASSLPLLYALHSLLLRLGFLSHHVISLAL 171
Query: 58 LHEYVVTSFGFARKLFDELPERN--AVTWNTMIKGYSKSGNVCEARDFFERM-----PLR 110
L Y + AR LFD++P++N V +NT+I + ++ AR F+ M R
Sbjct: 172 LKPYPLPQ---ARVLFDDMPQKNKCTVAYNTLITACLRVRDIRAARHLFDEMQWHRRSRR 228
Query: 111 NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGK 170
+V SW+ MIA G D + F MI + PD T+ AVL C G+V G+
Sbjct: 229 SVVSWNLMIAGCARCGRDDMAVSCFERMIREGEVAPDDGTLVAVLPACGRTGNV--RAGR 286
Query: 171 SAHGFIVKNEW-ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR 229
AH + K+ + +A L+DMY K G + A VF R+V+SW LI G +
Sbjct: 287 WAHEYARKSGLLDGTVHVANALMDMYCKSGDVNSAREVFMTTRPRSVVSWNTLIAGFSLN 346
Query: 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQH 289
G + + LF+ M+ G++PN +TF VL C H G VD GR+ F+ + E+ E I+H
Sbjct: 347 GRGVEGIDLFQEMRRQGMEPNAVTFLAVLGCCAHAGAVDIGREIFRSMLSEHGTEAAIEH 406
Query: 290 YGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349
YGCMVDLFG++G LEEA+ +I+ M ++PN IWG+ L+AC+ H +AE +K+ + +
Sbjct: 407 YGCMVDLFGRSGLLEEAHVLIQGMPMKPNAAIWGALLSACRAHAGLGLAEVALKELINL- 465
Query: 350 KPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+P N G + L+ +LY E+W+ A VR+LM +V KA G S +
Sbjct: 466 EPWNSGN-YVLLANLYVETERWDEAGEVRRLMRRMSVNKAPGQSFM 510
>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
[Vitis vinifera]
gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 131/393 (33%), Positives = 215/393 (54%), Gaps = 36/393 (9%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV 63
+ +M + V D+F+ +LK+C + +H+HILKLG + V+V
Sbjct: 119 YKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQ--------- 169
Query: 64 TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYL 123
N++I Y K G + FE+M R+VASWSA+I A+
Sbjct: 170 ---------------------NSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHA 208
Query: 124 NAGAYDPGLKLFREMISNEGL-TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+ G + L+L +M SNEG ++ + +VLS C+HLG++ L G+S HGF+++N
Sbjct: 209 SLGMWSDCLRLLGDM-SNEGYWRAEESILVSVLSACTHLGALDL--GRSVHGFLLRNVSG 265
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
LN + T L++MY KCG L + +F+ M ++N +S++ +I G A GY + L +F M
Sbjct: 266 LNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEM 325
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
G++P+++ + GVL AC H GLV EG + F + E+ +EP IQHYGCMVDL G+AG
Sbjct: 326 LEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGK 385
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362
++EA E+I++M +EPN ++W S L+A K H E KQ ++ + ++
Sbjct: 386 IDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKL--DSQKASDYVVLS 443
Query: 363 DLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y ++WE + R M ++ + + G S++
Sbjct: 444 NMYAQAQRWEDVAKTRTNMFSKGLSQRPGFSLV 476
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 120/278 (43%), Gaps = 46/278 (16%)
Query: 3 LFSQMHRQSVPSDSFSI-----LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSL 57
L S+ P SF + + +LK C+ N+ H+ ILKLG + A++L
Sbjct: 13 LVSREDPPQSPELSFKLGEKECVSLLKKCS---NMEEFKQSHARILKLGLFGDSFCASNL 69
Query: 58 LHEYVVTSFG---FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVAS 114
+ ++ +G +A +F ++ E + +NTM++G+ K N EA
Sbjct: 70 VATCALSDWGSMDYACSIFRQMDELGSFQFNTMMRGHVKDMNTEEA-------------- 115
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
L ++EM + G+ PD T +L C+ L +V G H
Sbjct: 116 -----------------LITYKEM-AERGVKPDNFTYPTLLKACARLPAVE--EGMQVHA 155
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
I+K E + + L+ MY KCG + VFE M ER+V SW+ALI A G D
Sbjct: 156 HILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSD 215
Query: 235 ALSLFEMMQATGV-KPNEMTFTGVLTACVHTGLVDEGR 271
L L M G + E VL+AC H G +D GR
Sbjct: 216 CLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGR 253
>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 648
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 129/395 (32%), Positives = 220/395 (55%), Gaps = 36/395 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+QL+ QM + D+F+ +LK+C + + +H H+++ G+ V+V +L
Sbjct: 161 VQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAAL--- 217
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
I Y+K G V AR+ F+++ +R+ W++M+A
Sbjct: 218 ---------------------------IDMYAKCGCVGSAREVFDKILVRDAVLWNSMLA 250
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
AY G D L L EM+ GL P + T+ +S + + L G+ HG + E
Sbjct: 251 AYSQNGHPDACLSLCSEMVLT-GLRPTEATLVTAISASA--DNAALPQGRELHGLSWRQE 307
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+E ++++ T LVDMYAKCG ++ A +FE + + V+SW A+I G A G++ +AL LFE
Sbjct: 308 FESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFE 367
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M KP+ +TF GVL+AC H GL++EG +F+ + +Y ++P +QHY CMVDL G +
Sbjct: 368 EMNRVA-KPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHS 426
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G L+EAY +I M++ P+ +WG+ L +CK H ++ E +++ + + +P+ D G + +
Sbjct: 427 GRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIEL-EPD-DAGNYVI 484
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y KWEG ++RKLM ++ ++K+ S I
Sbjct: 485 LSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWI 519
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 154/334 (46%), Gaps = 39/334 (11%)
Query: 22 ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT-SFGFARKLFDELPERN 80
+L+SC + LH+ + GF +AT L++ Y V S AR LFD +P+ N
Sbjct: 81 LLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHN 140
Query: 81 AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMIS 140
WN +I+GY +W+ G Y+ ++L+ +M
Sbjct: 141 IFLWNVLIRGY----------------------AWN---------GPYEAAVQLYYQMF- 168
Query: 141 NEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGF 200
+ GL PD T VL C+ L ++ G+ H +V+ WE + + L+DMYAKCG
Sbjct: 169 DYGLVPDNFTFPFVLKACAALSAIE--HGREIHEHVVQTGWEKDVFVGAALIDMYAKCGC 226
Query: 201 LKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260
+ A VF+ + R+ + W +++ + G+ + LSL M TG++P E T ++A
Sbjct: 227 VGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISA 286
Query: 261 CVHTGLVDEGRKYFKMI-DEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNV 319
+ +GR+ + +E++ +++ +VD++ K G + A + + ++ V
Sbjct: 287 SADNAALPQGRELHGLSWRQEFESHDKVK--TALVDMYAKCGSVRVARNLFERLGVK-RV 343
Query: 320 IIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353
+ W + + H A + ++ R+ KP++
Sbjct: 344 VSWNAMITGYAMHGHATEALDLFEEMNRVAKPDH 377
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 90/193 (46%), Gaps = 4/193 (2%)
Query: 144 LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKY 203
LTP ++L C + + GK H + + + IAT LV++Y C L
Sbjct: 71 LTPTYSNYASLLQSC--IARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSS 128
Query: 204 ALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263
A ++F+ + + N+ W LI G A G E A+ L+ M G+ P+ TF VL AC
Sbjct: 129 ARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAA 188
Query: 264 TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWG 323
++ GR+ + + + E + ++D++ K G + A EV + L + ++W
Sbjct: 189 LSAIEHGREIHEHV-VQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKI-LVRDAVLWN 246
Query: 324 SFLAACKEHKQFD 336
S LAA ++ D
Sbjct: 247 SMLAAYSQNGHPD 259
>gi|449516814|ref|XP_004165441.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like isoform 1 [Cucumis sativus]
Length = 703
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 131/394 (33%), Positives = 224/394 (56%), Gaps = 8/394 (2%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+S M + + + I+ +L +C ++ HS I+K GF+ ++ +++ Y
Sbjct: 312 LYSAMRKSDLHPNEVLIVDLLSACGQSVSIEEGRQFHSLIVKNGFVCFDFIQATIISFYA 371
Query: 63 VTSFGFARKLFDELPERNAVTW-NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
L ++ +++ +T N MI G++K+G + +AR F+ MP ++V SWS MI+
Sbjct: 372 ACRRIDLAYLQYQMSDKSHLTSSNVMIVGFTKNGMIDQARQIFDMMPEKDVFSWSTMISG 431
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y D L LF MI ++ + P+++T+ +V S + LG L G+ AH ++
Sbjct: 432 YAQNELPDVALDLFHGMIDSK-VEPNEITMVSVFSAIAALGK--LPEGRWAHEYVCNKVI 488
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERN--VISWTALICGSAHRGYSEDALSLF 239
LN+ ++ ++DMYAKCG + AL VF ++++ V W A+ICG A G++ +L +F
Sbjct: 489 PLNDNLSAAIIDMYAKCGSIDTALDVFRQIKDKTSTVSPWNAIICGLAMHGHANLSLEIF 548
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+Q +K N +TF GVL+AC H GLV+ G +YF + ++ +EP I+HYGC+VDL G+
Sbjct: 549 SNLQRRSIKLNSITFLGVLSACCHAGLVEVGERYFWSMKTQHGVEPNIKHYGCLVDLLGR 608
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
G L EA E++RTM ++ +V+IWG+ LA+ + H + ++ ER + R+ G V
Sbjct: 609 VGRLREAEEIVRTMPMKADVVIWGTLLASSRTHGEVEIGERAAENLARLQPSHGPGRV-- 666
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
L+ +LY WE A VR+ + +Q + ++ G S
Sbjct: 667 LLSNLYADAGLWEDAALVRRAIQSQRMIRSPGYS 700
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 109/385 (28%), Positives = 187/385 (48%), Gaps = 47/385 (12%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+++F M V + ++ ++ +C+H + LH+ ++KL F V ++T+LLH
Sbjct: 178 IEVFKDMRSAGVAPNEVTMASVMSACSHIGGIWNCRMLHALVIKLHFFGLVLISTNLLHM 237
Query: 61 YVV-TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y V +S ++LF+E+P RN V+WN M+KGY KSG V +AR+ FER+P R+V SW+ MI
Sbjct: 238 YCVFSSLKDTKRLFNEMPVRNTVSWNVMLKGYVKSGLVDQARELFERIPERDVFSWAIMI 297
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
++ L L+ M ++ L P+++ I +LS C SV + G+ H IVKN
Sbjct: 298 DGFVQMKRLRKALLLYSAMRKSD-LHPNEVLIVDLLSACGQ--SVSIEEGRQFHSLIVKN 354
Query: 180 EWELNEQIATILVDMYAKC-------------------------------GFLKYALMVF 208
+ + I ++ YA C G + A +F
Sbjct: 355 GFVCFDFIQATIISFYAACRRIDLAYLQYQMSDKSHLTSSNVMIVGFTKNGMIDQARQIF 414
Query: 209 ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
++M E++V SW+ +I G A + AL LF M + V+PNE+T V +A G +
Sbjct: 415 DMMPEKDVFSWSTMISGYAQNELPDVALDLFHGMIDSKVEPNEITMVSVFSAIAALGKLP 474
Query: 269 EGR---KYF--KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVI-IW 322
EGR +Y K+I +L I +D++ K G ++ A +V R ++ + + + W
Sbjct: 475 EGRWAHEYVCNKVIPLNDNLSAAI------IDMYAKCGSIDTALDVFRQIKDKTSTVSPW 528
Query: 323 GSFLAACKEHKQFDMAERVIKQALR 347
+ + H +++ + R
Sbjct: 529 NAIICGLAMHGHANLSLEIFSNLQR 553
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/384 (23%), Positives = 172/384 (44%), Gaps = 66/384 (17%)
Query: 17 FSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSF-GFARKLFDE 75
S++ LK C + ++ +H+ +LK GF S+ ++ SL++ YV AR LFD
Sbjct: 62 LSVVSALKYCASSSAISSGQQIHAIVLKYGFNSNTFILNSLINMYVKCGLLSSARLLFDS 121
Query: 76 LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF 135
++V+ N M+ GY K + AR F +MP R S++ MI + +++F
Sbjct: 122 CSVLDSVSCNIMMSGYVKLRQLENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAIEVF 181
Query: 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK----------------- 178
++M S G+ P+++T+ +V+S CSH+G G+ + H ++K
Sbjct: 182 KDMRS-AGVAPNEVTMASVMSACSHIG--GIWNCRMLHALVIKLHFFGLVLISTNLLHMY 238
Query: 179 -------------NEWELNEQIA-TILVDMYAKCGFLKYALMVFELMEERNVISWTALIC 224
NE + ++ +++ Y K G + A +FE + ER+V SW +I
Sbjct: 239 CVFSSLKDTKRLFNEMPVRNTVSWNVMLKGYVKSGLVDQARELFERIPERDVFSWAIMID 298
Query: 225 GSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE----- 279
G AL L+ M+ + + PNE+ +L+AC + ++EGR++ +I +
Sbjct: 299 GFVQMKRLRKALLLYSAMRKSDLHPNEVLIVDLLSACGQSVSIEEGRQFHSLIVKNGFVC 358
Query: 280 -----------------------EYDLEPR--IQHYGCMVDLFGKAGFLEEAYEVIRTMR 314
+Y + + + M+ F K G +++A ++ M
Sbjct: 359 FDFIQATIISFYAACRRIDLAYLQYQMSDKSHLTSSNVMIVGFTKNGMIDQARQIFDMMP 418
Query: 315 LEPNVIIWGSFLAACKEHKQFDMA 338
E +V W + ++ +++ D+A
Sbjct: 419 -EKDVFSWSTMISGYAQNELPDVA 441
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 33/149 (22%)
Query: 148 QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMV 207
++++ + L C+ S + G+ H ++K + N I L++MY KCG L A ++
Sbjct: 61 ELSVVSALKYCA--SSSAISSGQQIHAIVLKYGFNSNTFILNSLINMYVKCGLLSSARLL 118
Query: 208 FE-------------------------------LMEERNVISWTALICGSAHRGYSEDAL 236
F+ M ER +S+T +I G A +A+
Sbjct: 119 FDSCSVLDSVSCNIMMSGYVKLRQLENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAI 178
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTG 265
+F+ M++ GV PNE+T V++AC H G
Sbjct: 179 EVFKDMRSAGVAPNEVTMASVMSACSHIG 207
>gi|413943774|gb|AFW76423.1| hypothetical protein ZEAMMB73_944105 [Zea mays]
Length = 446
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 133/389 (34%), Positives = 216/389 (55%), Gaps = 13/389 (3%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFI-SHVYVATSLLHEYVVTSFGF-ARKL 72
D ++ ++ +C +H+H++K + + + +L+ Y + AR +
Sbjct: 9 DEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCI 68
Query: 73 FDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGL 132
FD +P R+ V+ +++ GY+KS NV +A+ F +M +NV +W+ +IAAY G + +
Sbjct: 69 FDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAI 128
Query: 133 KLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW------ELNEQ 186
+LF ++ + + P T G VL+ C ++ L +G+ AH ++K + E +
Sbjct: 129 RLFVQL-KRDSIWPTHYTYGNVLNACGNIAV--LQLGQQAHVHVLKEGFRFDFGPESDVF 185
Query: 187 IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
+ LVDMY K G + VFE M R+ +SW A+I G A G ++DAL LFE M +
Sbjct: 186 VGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSN 245
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
P+ +T GVL+AC H+GLVDEGR++F + E++ + P HY CMVDL G+AG L+EA
Sbjct: 246 ENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEA 305
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366
E+I+ M EP+ ++W S L AC+ HK ++ ER + + PEN G + L+ ++Y
Sbjct: 306 EELIKDMPTEPDSVLWASLLGACRLHKNVELGERTAGRLFEL-DPEN-SGPYVLLSNMYA 363
Query: 367 MNEKWEGAERVRKLMLNQNVRKARGSSVI 395
KW RVR+ M ++ V K G S I
Sbjct: 364 EMGKWADVFRVRRSMKDRGVSKQPGCSWI 392
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 106/232 (45%), Gaps = 43/232 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFI------SHVYVA 54
++LF Q+ R S+ ++ ++L +C + L + H H+LK GF S V+V
Sbjct: 128 IRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVG 187
Query: 55 TSLLHEYVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA 113
SL+ Y+ T S K+F+ + R+ V+WN MI GY+++G +A FERM
Sbjct: 188 NSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERM------ 241
Query: 114 SWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH 173
+ SNE PD +T+ VLS C H G V G+
Sbjct: 242 ------------------------LCSNE--NPDSVTMIGVLSACGHSGLVD--EGRRHF 273
Query: 174 GFIVKNEW-ELNEQIATILVDMYAKCGFLKYA-LMVFELMEERNVISWTALI 223
F+ ++ + T +VD+ + G LK A ++ ++ E + + W +L+
Sbjct: 274 HFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLL 325
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 39/214 (18%)
Query: 143 GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI-ATILVDMYAKCGF- 200
G PD++T+ +V+S C+ L + G+ H +VK + ++ + LVDMYAKCG
Sbjct: 5 GFFPDEVTLSSVMSACAGLAAE--REGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRT 62
Query: 201 ------------------------------LKYALMVFELMEERNVISWTALICGSAHRG 230
++ A +VF M E+NVI+W LI A G
Sbjct: 63 WEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNG 122
Query: 231 YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE---YDLEPRI 287
E+A+ LF ++ + P T+ VL AC + ++ G++ + +E +D P
Sbjct: 123 EEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPES 182
Query: 288 QHY--GCMVDLFGKAGFLEEAYEVIRTMRLEPNV 319
+ +VD++ K G +++ +V M NV
Sbjct: 183 DVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNV 216
>gi|297741541|emb|CBI32673.3| unnamed protein product [Vitis vinifera]
Length = 819
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 132/396 (33%), Positives = 222/396 (56%), Gaps = 10/396 (2%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
FS+M ++ + FS ++ S T +L LH+ +K+G S+V+V ++++ Y
Sbjct: 379 FFSRMLALNIKPNQFSFGTVIPSSTALQDLNSGRQLHACAIKMGLESNVFVGSAVVDFYA 438
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+TS A+K F++ E N V++ T+I+GY K +A F +MP RNV SW+AMI+
Sbjct: 439 KLTSINEAQKAFEDTHEPNVVSYTTLIRGYLKKERFDDALALFRKMPERNVVSWNAMISG 498
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y G + + LF M+ EG P++ T +S +++ ++G MG+S HG VK
Sbjct: 499 YSQMGYNEEAVNLFVVML-REGTLPNERTFPCAISAVANIAALG--MGRSFHGSAVKFLG 555
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ + I LV YAKCG ++ +L+VF + ++N++SW ALICG A+ G +A+ FE
Sbjct: 556 KFDVFIGNSLVSFYAKCGSMEESLLVFNTLPKKNIVSWNALICGYANHGRGMEAIYFFEK 615
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKM--IDEEYDLEPRIQHYGCMVDLFGK 299
MQ TG++PN +T G+L AC H+GLVD+G YF ++E L P +H+ CMVDL +
Sbjct: 616 MQDTGLRPNSVTLLGLLLACNHSGLVDKGYSYFNKARVEEPGLLTP--EHHACMVDLLSR 673
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
+G +EA + + + P + W + L C+ H ++ E ++ L + PE D +
Sbjct: 674 SGRFKEAEKFLHELPFVPGIGFWKALLGGCRIHSNMELGELAARKILAL-DPE-DVSSYV 731
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++ + ++ +W+ +RK M + ++ GSS I
Sbjct: 732 MLSNAHSAAGRWQSVSMIRKEMREKRMKGVPGSSWI 767
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 84/343 (24%), Positives = 138/343 (40%), Gaps = 87/343 (25%)
Query: 30 NNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFAR------KLFDELPERNAVT 83
N L +H +KLG T++L +V S+ ++ KLFDE+P + V+
Sbjct: 308 NQLKESQRIHGRAIKLG--------TTILEPDIVCSYSASKALWDACKLFDEVPNWDVVS 359
Query: 84 WNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEG 143
I +++ + EA FF RM N+
Sbjct: 360 ATATIGCFARYHHHEEAIYFFSRMLALNI------------------------------- 388
Query: 144 LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC----- 198
P+Q + G V+ + L L G+ H +K E N + + +VD YAK
Sbjct: 389 -KPNQFSFGTVIPSSTALQD--LNSGRQLHACAIKMGLESNVFVGSAVVDFYAKLTSINE 445
Query: 199 ---------------------GFLKY-----ALMVFELMEERNVISWTALICGSAHRGYS 232
G+LK AL +F M ERNV+SW A+I G + GY+
Sbjct: 446 AQKAFEDTHEPNVVSYTTLIRGYLKKERFDDALALFRKMPERNVVSWNAMISGYSQMGYN 505
Query: 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE---EYDLEPRIQH 289
E+A++LF +M G PNE TF ++A + + GR + + ++D +
Sbjct: 506 EEAVNLFVVMLREGTLPNERTFPCAISAVANIAALGMGRSFHGSAVKFLGKFD----VFI 561
Query: 290 YGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
+V + K G +EE+ V T+ + N++ W + + H
Sbjct: 562 GNSLVSFYAKCGSMEESLLVFNTLP-KKNIVSWNALICGYANH 603
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 2/148 (1%)
Query: 191 LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250
+V Y+ L A +F+ + +V+S TA I A + E+A+ F M A +KPN
Sbjct: 332 IVCSYSASKALWDACKLFDEVPNWDVVSATATIGCFARYHHHEEAIYFFSRMLALNIKPN 391
Query: 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI 310
+ +F V+ + ++ GR+ + LE + +VD + K + EA +
Sbjct: 392 QFSFGTVIPSSTALQDLNSGRQ-LHACAIKMGLESNVFVGSAVVDFYAKLTSINEAQKAF 450
Query: 311 RTMRLEPNVIIWGSFLAACKEHKQFDMA 338
EPNV+ + + + + ++FD A
Sbjct: 451 EDTH-EPNVVSYTTLIRGYLKKERFDDA 477
>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 127/393 (32%), Positives = 213/393 (54%), Gaps = 34/393 (8%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ +M D ++ ++ +C +L V LHSHI ++
Sbjct: 167 LYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDM--------------- 211
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
+ AV + ++ Y+K G++ AR F+++ ++V +WSA+I Y
Sbjct: 212 ---------------KICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGY 256
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+ L+LFRE+ + P+++TI AV+S C+ LG L G+ H +I + +
Sbjct: 257 VKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGD--LETGRWVHDYITRTQKG 314
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
+ + L+DM++KCG + A +F+ M +++ISW +++ G A G +AL+ F +M
Sbjct: 315 HSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLM 374
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
Q T ++P+E+TF GVLTAC H GLV EG+K F I+ Y + + +HYGCMVDL +AG
Sbjct: 375 QTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGL 434
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362
L EA E IR M L+P+ IWGS L AC+ + ++ E + L++ +P ND GV+ L+
Sbjct: 435 LAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKL-EPTND-GVYILLS 492
Query: 363 DLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y + W ++VR+LM + ++K G S +
Sbjct: 493 NIYAKRKMWNEVKKVRELMNEKGIQKTPGCSSV 525
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/329 (27%), Positives = 162/329 (49%), Gaps = 39/329 (11%)
Query: 1 MQLFSQMHRQS--VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL 58
+Q +++M +S VP D F+ +LK C V LH ++K S +Y+ T+LL
Sbjct: 63 LQSYTEMLERSRNVP-DRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLL 121
Query: 59 HEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
+ Y + G++ AR FERM RN W++M
Sbjct: 122 NMY------------------------------AACGDLKSARFLFERMGHRNKVVWTSM 151
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I+ Y+ + L L+++M +G +PD++T+ ++S C+ L +G+ G H I +
Sbjct: 152 ISGYMKNHCPNEALLLYKKM-EEDGFSPDEVTMATLVSACAELKDLGV--GMKLHSHIRE 208
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ ++ + + LV+MYAKCG LK A VF+ + +++V +W+ALI G S +AL L
Sbjct: 209 MDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQL 268
Query: 239 F-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
F E+ + ++PNE+T V++AC G ++ GR I + ++D+F
Sbjct: 269 FREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHS-VSLNNSLIDMF 327
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
K G ++ A + +M + ++I W S +
Sbjct: 328 SKCGDIDAAKRIFDSMSYK-DLISWNSMV 355
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 112/216 (51%), Gaps = 4/216 (1%)
Query: 111 NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGK 170
+V +W++M+ A++N+ L+ + EM+ PD+ T ++L GC+ L + +GK
Sbjct: 42 DVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALL--LEFKVGK 99
Query: 171 SAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRG 230
HG +VK + I T L++MYA CG LK A +FE M RN + WT++I G
Sbjct: 100 VLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNH 159
Query: 231 YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHY 290
+AL L++ M+ G P+E+T +++AC + G K I E D++
Sbjct: 160 CPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHI-REMDMKICAVLG 218
Query: 291 GCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
+V+++ K G L+ A +V + + +V W + +
Sbjct: 219 SALVNMYAKCGDLKTARQVFDKLS-DKDVYAWSALI 253
>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 672
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 187/311 (60%), Gaps = 4/311 (1%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
NT++ Y+K G + +R F+ M +V SW+++IA Y G LF +M+ +
Sbjct: 237 NTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEV 296
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
+ +T+ AVL C+H G+ L +GK H +VK E E N + T +VDMY KCG ++ A
Sbjct: 297 RYNAVTLSAVLLACAHSGA--LQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMA 354
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
F+ ++ +NV SWT ++ G G+ ++A+ +F M G+KPN +TF VL AC H
Sbjct: 355 RKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHA 414
Query: 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324
GL+ EG +F + E+D+EP I+HY CMVDL G+AG+L+EAY +I+ M+++P+ I+WGS
Sbjct: 415 GLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGS 474
Query: 325 FLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384
L AC+ HK ++ E ++ ++ P N G + L+ ++Y +W+ ER+R LM N
Sbjct: 475 LLGACRIHKNVELGEISARKLFKL-DPSN-CGYYVLLSNIYADAGRWDDVERMRILMKNH 532
Query: 385 NVRKARGSSVI 395
+ K G S++
Sbjct: 533 GLLKTPGYSIV 543
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 103/351 (29%), Positives = 168/351 (47%), Gaps = 28/351 (7%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV 63
FS M + S+ + + +KSC+ +L +H G+ S ++VA++L+ Y
Sbjct: 74 FSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSK 133
Query: 64 TSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
+ ARKLFDE+PERN V+W +MI GY ++ EA F+ L
Sbjct: 134 CGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFLL------------- 180
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
++ YD I G+ D + +G V+S C+ + + + HG VK +E
Sbjct: 181 VDETDYDE--------IVGVGVGVDSVLLGCVISACARVCVKSVT--ECVHGLAVKKGFE 230
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF-EM 241
+ L+D YAKCG + + VF+ MEE +V SW +LI A G S +A SLF +M
Sbjct: 231 GCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDM 290
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
++ V+ N +T + VL AC H+G + G+ + + +LE + +VD++ K G
Sbjct: 291 VKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQV-VKMELEDNLVVGTSIVDMYCKCG 349
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-VKP 351
+E A + ++ NV W +A H A +V + +R +KP
Sbjct: 350 RVEMARKAFDRLK-RKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKP 399
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 104/230 (45%), Gaps = 20/230 (8%)
Query: 111 NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGK 170
+V SW+++IA + +G L F M L P++ T + CS L L GK
Sbjct: 50 SVYSWNSIIADFARSGDSLQALYAFSSM-RKLSLHPNRSTFPCTIKSCSSL--YDLCAGK 106
Query: 171 SAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRG 230
H + + +A+ L+DMY+KCG+L A +F+ + ERNV+SWT++I G
Sbjct: 107 QIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNE 166
Query: 231 YSEDALSLF-EMMQATGVKPNEMTFT-----GVLTACVHTGLVDEGRKYFKMIDE-EYDL 283
+ +A+ LF E + +E+ VL CV + R K + E + L
Sbjct: 167 RAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISAC---ARVCVKSVTECVHGL 223
Query: 284 EPRIQHYGC------MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
+ GC ++D + K G + + +V M E +V W S +A
Sbjct: 224 AVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGME-ETDVCSWNSLIA 272
>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
Length = 665
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 140/435 (32%), Positives = 219/435 (50%), Gaps = 48/435 (11%)
Query: 3 LFSQMHRQSVPS---DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
LF+ M R P+ D ++ LKSC+ +L + +HS + KL +VYVA S +
Sbjct: 108 LFASM-RPRGPACFPDHYTYPLALKSCSASKDLLLGLQIHSAVAKLRLDRNVYVAHSAIS 166
Query: 60 EYVVTSFG-FARKLFDELPERNAVTWNTMIKGYSKSG----------------------- 95
Y A ++FD +P R+ V+WN MI G+++ G
Sbjct: 167 MYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFARVGLFDRAIEVFKQFVVLQGSMPDAG 226
Query: 96 ---------------NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMIS 140
++ R F+ M + + SW+AM+A Y N + ++LF M
Sbjct: 227 TMAGILPAMGNAKPDDIRFVRRVFDNMQFKELISWNAMLAVYANNEFHVKAVELFMLMEK 286
Query: 141 NEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGF 200
+E + PD +T+ VL C L + + GK H I + N + L+DMYA CG
Sbjct: 287 DE-VEPDSITLATVLPPCGELSAFSV--GKRIHEIIKRKNMCPNLLLENALMDMYASCGC 343
Query: 201 LKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260
LK A +F+LM R+VISWT++I G+ +A+ LFE M G++P+ + F VL A
Sbjct: 344 LKDAREIFDLMSARDVISWTSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIAFVAVLAA 403
Query: 261 CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVI 320
C H GL+ +G+ YF + Y + P+ +HY CMVDL G+AG + EAY+ I TM +EPN
Sbjct: 404 CSHAGLLADGKHYFDSMTSRYHIIPKAEHYTCMVDLLGRAGCINEAYDFITTMLIEPNER 463
Query: 321 IWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKL 380
+WG+ L AC+ H D+ +V PE G + L+ ++Y +W VR +
Sbjct: 464 VWGALLQACRIHSNMDIGLVAADNLFSLV-PEQT-GYYVLLSNMYARAGRWADVTSVRSV 521
Query: 381 MLNQNVRKARGSSVI 395
M+N+ ++K G+S++
Sbjct: 522 MVNKGIKKFPGTSIV 536
>gi|359481504|ref|XP_002274656.2| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
mitochondrial-like [Vitis vinifera]
Length = 538
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 132/396 (33%), Positives = 222/396 (56%), Gaps = 10/396 (2%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
FS+M ++ + FS ++ S T +L LH+ +K+G S+V+V ++++ Y
Sbjct: 98 FFSRMLALNIKPNQFSFGTVIPSSTALQDLNSGRQLHACAIKMGLESNVFVGSAVVDFYA 157
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+TS A+K F++ E N V++ T+I+GY K +A F +MP RNV SW+AMI+
Sbjct: 158 KLTSINEAQKAFEDTHEPNVVSYTTLIRGYLKKERFDDALALFRKMPERNVVSWNAMISG 217
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y G + + LF M+ EG P++ T +S +++ ++G MG+S HG VK
Sbjct: 218 YSQMGYNEEAVNLFVVML-REGTLPNERTFPCAISAVANIAALG--MGRSFHGSAVKFLG 274
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ + I LV YAKCG ++ +L+VF + ++N++SW ALICG A+ G +A+ FE
Sbjct: 275 KFDVFIGNSLVSFYAKCGSMEESLLVFNTLPKKNIVSWNALICGYANHGRGMEAIYFFEK 334
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK--MIDEEYDLEPRIQHYGCMVDLFGK 299
MQ TG++PN +T G+L AC H+GLVD+G YF ++E L P +H+ CMVDL +
Sbjct: 335 MQDTGLRPNSVTLLGLLLACNHSGLVDKGYSYFNKARVEEPGLLTP--EHHACMVDLLSR 392
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
+G +EA + + + P + W + L C+ H ++ E ++ L + PE D +
Sbjct: 393 SGRFKEAEKFLHELPFVPGIGFWKALLGGCRIHSNMELGELAARKILAL-DPE-DVSSYV 450
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++ + ++ +W+ +RK M + ++ GSS I
Sbjct: 451 MLSNAHSAAGRWQSVSMIRKEMREKRMKGVPGSSWI 486
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 84/343 (24%), Positives = 138/343 (40%), Gaps = 87/343 (25%)
Query: 30 NNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFAR------KLFDELPERNAVT 83
N L +H +KLG T++L +V S+ ++ KLFDE+P + V+
Sbjct: 27 NQLKESQRIHGRAIKLG--------TTILEPDIVCSYSASKALWDACKLFDEVPNWDVVS 78
Query: 84 WNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEG 143
I +++ + EA FF RM N+
Sbjct: 79 ATATIGCFARYHHHEEAIYFFSRMLALNI------------------------------- 107
Query: 144 LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC----- 198
P+Q + G V+ + L L G+ H +K E N + + +VD YAK
Sbjct: 108 -KPNQFSFGTVIPSSTALQD--LNSGRQLHACAIKMGLESNVFVGSAVVDFYAKLTSINE 164
Query: 199 ---------------------GFLKY-----ALMVFELMEERNVISWTALICGSAHRGYS 232
G+LK AL +F M ERNV+SW A+I G + GY+
Sbjct: 165 AQKAFEDTHEPNVVSYTTLIRGYLKKERFDDALALFRKMPERNVVSWNAMISGYSQMGYN 224
Query: 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE---EYDLEPRIQH 289
E+A++LF +M G PNE TF ++A + + GR + + ++D +
Sbjct: 225 EEAVNLFVVMLREGTLPNERTFPCAISAVANIAALGMGRSFHGSAVKFLGKFD----VFI 280
Query: 290 YGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
+V + K G +EE+ V T+ + N++ W + + H
Sbjct: 281 GNSLVSFYAKCGSMEESLLVFNTLP-KKNIVSWNALICGYANH 322
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 2/148 (1%)
Query: 191 LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250
+V Y+ L A +F+ + +V+S TA I A + E+A+ F M A +KPN
Sbjct: 51 IVCSYSASKALWDACKLFDEVPNWDVVSATATIGCFARYHHHEEAIYFFSRMLALNIKPN 110
Query: 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI 310
+ +F V+ + ++ GR+ + LE + +VD + K + EA +
Sbjct: 111 QFSFGTVIPSSTALQDLNSGRQ-LHACAIKMGLESNVFVGSAVVDFYAKLTSINEAQKAF 169
Query: 311 RTMRLEPNVIIWGSFLAACKEHKQFDMA 338
EPNV+ + + + + ++FD A
Sbjct: 170 EDTH-EPNVVSYTTLIRGYLKKERFDDA 196
>gi|147859209|emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]
Length = 728
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 136/395 (34%), Positives = 222/395 (56%), Gaps = 7/395 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LFS+M ++ + L + L+ ++H H+ K+G V++ +SL+
Sbjct: 301 LKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDL 360
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y R +FD + E+N V WN+M+ GYS +G + E + FE +P +N SW +J
Sbjct: 361 YCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEEXEELFELIPEKNDXSWGTIJ 420
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A YL + L++F ++ + G TP++ T +VL C+ + S L G + HG I+K
Sbjct: 421 AGYLENEQCEKVLEVFNTLLVS-GQTPNKSTFSSVLCACASIAS--LDKGMNVHGKIIKL 477
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + + T L DMYAKCG + + VFE M E+N ISWT +I G A G++ ++L LF
Sbjct: 478 GIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILF 537
Query: 240 EMMQATG-VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
E M+ T V PNE+ VL AC H GLVD+G YF +++ Y ++P+ +HY C+VDL
Sbjct: 538 EEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLS 597
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
++G L EA E IRT+ +P W + L+ CK++K +AER K+ ++ EN+ +
Sbjct: 598 RSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQLA--ENNSAGY 655
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
L+ ++Y +W +RKLM + ++K+ G S
Sbjct: 656 VLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCS 690
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 110/384 (28%), Positives = 173/384 (45%), Gaps = 73/384 (19%)
Query: 13 PSDSF-----SILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY------ 61
P SF + + +LK ++ +T + LH+H++K GF S Y+A LL Y
Sbjct: 13 PKKSFRAYAQTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKF 72
Query: 62 -----VVTSFGF---------------------ARKLFDELPERNAVTWNTMIKGYSKSG 95
+V F AR LFDE+PERN V+W+ +I G K G
Sbjct: 73 AEIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYG 132
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155
V E+ +FER P +NV SW+A I+ ++ G LKLF ++ + G+ P+ +T +V+
Sbjct: 133 RVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLES-GVRPNDVTFTSVV 191
Query: 156 SGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA--------------------------- 188
C LG GL G S G +VK +E ++
Sbjct: 192 RACGELGDFGL--GMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRD 249
Query: 189 ----TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQA 244
T ++D Y + G L+ A +F+ M ERN ISW+A+I + GY+E+AL LF M
Sbjct: 250 VVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQ 309
Query: 245 TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLE 304
G KPN F L+A + G + + ++ + ++DL+ K G +
Sbjct: 310 EGFKPNISCFACTLSALASLRALSAGINIHGHVT-KIGIDKDVFIGSSLIDLYCKCGKPD 368
Query: 305 EAYEVIRTMRLEPNVIIWGSFLAA 328
+ ++ + LE NV+ W S +
Sbjct: 369 DG-RLVFDLILEKNVVCWNSMVGG 391
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 166/357 (46%), Gaps = 43/357 (12%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH- 59
++LF ++ V + + ++++C + + + ++K GF ++ V+ SL+
Sbjct: 169 LKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITL 228
Query: 60 EYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
+ AR++FD + +R+ V+W ++ Y ++G++ EAR F+ MP RN SWSAMI
Sbjct: 229 SLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMI 288
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A Y +G + LKLF +M+ EG P+ LS + L + L G + HG + K
Sbjct: 289 ARYSQSGYAEEALKLFSKMV-QEGFKPNISCFACTLSALASLRA--LSAGINIHGHVTKI 345
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRG--------- 230
+ + I + L+D+Y KCG +VF+L+ E+NV+ W +++ G + G
Sbjct: 346 GIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEEXEELF 405
Query: 231 ----------------------YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
E L +F + +G PN+ TF+ VL AC +D
Sbjct: 406 ELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLD 465
Query: 269 EGRKYFKMIDE---EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
+G I + +YD I + D++ K G + + +V M E N I W
Sbjct: 466 KGMNVHGKIIKLGIQYD----IFVGTALTDMYAKCGDIGSSKQVFERMP-EKNEISW 517
>gi|357474431|ref|XP_003607500.1| hypothetical protein MTR_4g078750 [Medicago truncatula]
gi|355508555|gb|AES89697.1| hypothetical protein MTR_4g078750 [Medicago truncatula]
Length = 470
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 135/401 (33%), Positives = 220/401 (54%), Gaps = 16/401 (3%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+F+ M +V ++ + +LKS + F V+ LH LK G +S +V T+LL Y
Sbjct: 75 IFTNMLANNVSPNTHTFPPLLKSSSAF----VVTPLHCQALKRGILSDPFVLTTLLVVYA 130
Query: 63 VTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
T+ A+K+F+E+P V N MI ++ +GN+ A FE MP R+V SW+ M+
Sbjct: 131 RTNHIVCAQKVFEEVPMFCIVASNAMINAFTMNGNMEGALLVFEWMPYRDVVSWTTMVNG 190
Query: 122 YLNAGAYDPGLKLFREMISNEGL-----TPDQMTIGAVLSGCSHLGSVGLL-MGKSAHGF 175
+ +G + ++ F M+ ++ + P++ T +VLS C+ L G L G+ HG+
Sbjct: 191 FALSGNFGAAIRFFGTMMRHKDVLDCLVKPNEATYVSVLSSCTELEGKGALDFGRQVHGY 250
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
IV +L + T L+++Y K G L Y+ VF +M R V +W A+I A G ++A
Sbjct: 251 IVVKGVDLGVFVGTSLINLYGKMGCLNYSASVFRVMVVREVCTWNAMISSLASNGREKEA 310
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
L LFE M+ G+KPN +TF VLTAC G V EG + F+ + ++ + P ++HYGC+VD
Sbjct: 311 LDLFEKMKLQGLKPNSITFVAVLTACARGGFVSEGLELFESMSSKFQVVPVMEHYGCVVD 370
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND- 354
L G+AG ++EA E+IR M P+ + G+FL AC+ H ++ E + K M+K +
Sbjct: 371 LLGRAGHIQEAAEIIRNMPFPPDKTVLGAFLGACRIHGAIELGEEIAK----MLKLQTQH 426
Query: 355 GGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G + L+ +Y E+W A +R ++ + K S++
Sbjct: 427 CGQYLLLSSMYAEKERWNHAADLRNEIMEAGIHKIPAFSMV 467
>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
Length = 691
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 134/402 (33%), Positives = 223/402 (55%), Gaps = 36/402 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF +M R +V D +++ +L +C ++ + +H+ L+ +
Sbjct: 200 LELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHT----------------LVDD 243
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ FG + K+ N I YSK G+V A FE + ++V SW+ +I
Sbjct: 244 H--HGFGSSLKIV-----------NAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIG 290
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y + Y L LF+EM+ + G +P+ +T+ +VL C+HLG++ + G+ H +I K
Sbjct: 291 GYTHMNLYKEALLLFQEMLRS-GESPNDVTMLSVLPACAHLGAIDI--GRWIHVYIDKRL 347
Query: 181 WELNEQIA--TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ A T L+DMYAKCG ++ A VF M +++ SW A+I G A G + A L
Sbjct: 348 KGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDL 407
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F M+ G++P+++T G+L+AC H+GL+D GR FK + ++Y++ P+++HYGCM+DL G
Sbjct: 408 FSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLG 467
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
AG +EA E+I M +EP+ +IW S L ACK H ++AE Q L ++PEN G +
Sbjct: 468 HAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELAES-FAQKLMEIEPENSGS-Y 525
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLSV 400
L+ ++Y +WE R+R+++ + ++K G S I SV
Sbjct: 526 VLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEIDSV 567
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/360 (29%), Positives = 187/360 (51%), Gaps = 14/360 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++++ +M ++++ +LKSC +H+ ++KLG Y TSL+
Sbjct: 68 LEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISM 127
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y ARK+FD +R+ V+ +I GY+ G+V AR F+ + R+V SW+AMI
Sbjct: 128 YARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMI 187
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y+ Y+ L+LF+EM+ + PD+ T+ +VLS C+ GS+ L G+ H + +
Sbjct: 188 TGYVENCGYEEALELFKEMMRT-NVRPDEGTLVSVLSACAQSGSIEL--GREIHTLVDDH 244
Query: 180 E-WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ + +I + +Y+KCG ++ A +FE + ++V+SW LI G H ++AL L
Sbjct: 245 HGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLL 304
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD-LEPRIQHYGCMVDLF 297
F+ M +G PN++T VL AC H G +D GR ID+ + ++D++
Sbjct: 305 FQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMY 364
Query: 298 GKAGFLEEAYEVIRTMRLEP----NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353
K G +E A++V +M + N +I+G F + + FD+ R+ K ++P++
Sbjct: 365 AKCGDIEAAHQVFNSMMHKSLSSWNAMIFG-FAMHGRANAAFDLFSRMRKNG---IEPDD 420
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/334 (22%), Positives = 156/334 (46%), Gaps = 22/334 (6%)
Query: 39 HSHILKLGFISHVYVATSLLHEYVVT----SFGFARKLFDELPERNAVTWNTMIKGYSKS 94
H+ ++K G + Y + LL VV+ +A +F+ E N + WNTM++G + S
Sbjct: 2 HAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLASS 61
Query: 95 GNVCEARDFFERMP----LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMT 150
++ + + RM + N ++ ++ + + ++ G ++ ++ M
Sbjct: 62 SDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQV----------MK 111
Query: 151 IGAVLSGCSHLGSVGLLM--GKSAHGFIVKNEWELNEQIA-TILVDMYAKCGFLKYALMV 207
+G L +H + + G+ V + + ++ T L+ YA G ++ A V
Sbjct: 112 LGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKV 171
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
F+ + ER+V+SW A+I G E+AL LF+ M T V+P+E T VL+AC +G +
Sbjct: 172 FDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSI 231
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
+ GR+ ++D+ + ++ + L+ K G +E A + + + +V+ W + +
Sbjct: 232 ELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCK-DVVSWNTLIG 290
Query: 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
+ A + ++ LR + ND + +++
Sbjct: 291 GYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVL 324
>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 926
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 125/395 (31%), Positives = 212/395 (53%), Gaps = 36/395 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF +M + V D +++ IL +C NL K G I H Y+ + L
Sbjct: 439 IKLFDEMKSRGVVPDVYAVTSILNACAINGNL-----------KSGKIVHDYIRENNL-- 485
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
E N+ N + Y+K G++ +A D F M ++V SW+ MI
Sbjct: 486 -----------------ETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIG 528
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y + L LF EM PD T+ +L C+ L + L G+ HG+ ++N
Sbjct: 529 GYTKNSLPNEALTLFAEMQRES--KPDGTTVACILPACASLAA--LDKGREIHGYALRNG 584
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ ++ + +VDMY KCG L A +F+++ ++++SWT +I G GY +A++ F
Sbjct: 585 YSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFN 644
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ TG++P+E++F +L AC H+GL+DEG K F ++ +E +EP ++HY CMVDL +
Sbjct: 645 QMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLART 704
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G L +A++ I+ M ++P+ IWG+ L C+ H +AE+V ++ + +PEN G + L
Sbjct: 705 GNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFEL-EPENT-GYYVL 762
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y EKWE +++RK + + ++K G S I
Sbjct: 763 LANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWI 797
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 105/354 (29%), Positives = 173/354 (48%), Gaps = 38/354 (10%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF QM + +S++ ILK + +H I KLGF S+ V SL+
Sbjct: 236 INLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISF 295
Query: 61 YVV-TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y V A+KLFDEL +R+ ++WN+MI GY K+
Sbjct: 296 YFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKN------------------------- 330
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
G D G+++F +M+ G+ D T+ V C+++G+ LL+GK H + +K
Sbjct: 331 ------GLDDRGIEIFIKMLVF-GVDIDLATMVNVFVACANIGT--LLLGKVLHSYSIKA 381
Query: 180 EWELNE-QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
E + L+DMY+KCG L A+ VFE M+E+ V+SWT++I G G S+ A+ L
Sbjct: 382 ATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKL 441
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F+ M++ GV P+ T +L AC G + G+ I E +LE + D++
Sbjct: 442 FDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIREN-NLETNSFVSNALTDMYA 500
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE 352
K G +++A++V M+ + +VI W + + ++ + A + + R KP+
Sbjct: 501 KCGSMKDAHDVFSHMK-KKDVISWNTMIGGYTKNSLPNEALTLFAEMQRESKPD 553
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 108/238 (45%), Gaps = 4/238 (1%)
Query: 91 YSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMT 150
Y K G++ E R F+++ + W+ MI+ Y +G Y + LF++M+ G+ P+ T
Sbjct: 195 YVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLE-LGIKPNSYT 253
Query: 151 IGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFEL 210
++L + + V G+ HG I K + + L+ Y ++ A +F+
Sbjct: 254 FSSILKCFAAVARVE--EGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDE 311
Query: 211 MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
+ +R+VISW ++I G G + + +F M GV + T V AC + G + G
Sbjct: 312 LTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLG 371
Query: 271 RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
+ + L+ ++ ++D++ K G L A V M E V+ W S +
Sbjct: 372 KVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMD-EKTVVSWTSMITG 428
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 191 LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250
LV MY KCG LK MVF+ + E + W +I + G ++++LF+ M G+KPN
Sbjct: 191 LVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPN 250
Query: 251 EMTFTGVLTACVHTGLVDEGRKYFKMI 277
TF+ +L V+EGR+ +I
Sbjct: 251 SYTFSSILKCFAAVARVEEGRQVHGLI 277
>gi|449441061|ref|XP_004138302.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
gi|449477575|ref|XP_004155061.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 506
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 128/388 (32%), Positives = 218/388 (56%), Gaps = 36/388 (9%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+ + +M + + +D+F+ +LK ++ + LH +ILKLG SHVYV +L+H Y
Sbjct: 141 EFYKRMLEKGIAADNFTFSFLLKMTGQLGSIMLGKQLHVNILKLGLDSHVYVRNTLIHMY 200
Query: 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
G K N+ AR+ F+ +P ++ +W+A+I
Sbjct: 201 ----------------------------GRLKDVNI--ARNLFDELPKTDLVAWNAVIDC 230
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
+++ G Y+ L LF +M+ + G+ PD+ T+ +S CS LG+ L G+ H + N+
Sbjct: 231 HVSCGMYNEALDLFVQMLQS-GVEPDEATLVVTISACSALGA--LDCGRWVHSHVNSNDR 287
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ L+DMYAKCG ++YA +F + +N+++W +I G A G +EDAL+LF
Sbjct: 288 GKTIAVFNSLIDMYAKCGAVEYAREMFNAVSGKNIVTWNTMIMGLATHGDAEDALTLFSN 347
Query: 242 MQATGVK-PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M A V+ P+ +TF VL AC + G V+EGR+YF ++ + ++++P ++HYG MVD+ G+A
Sbjct: 348 MLAERVETPDGVTFLAVLCACNYGGKVEEGRRYFDLMTKHFNIQPTLKHYGSMVDILGRA 407
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
GF+EEAY++I++M +E N +IW + LAAC+ H ++ ERV L +V + + L
Sbjct: 408 GFVEEAYQLIKSMPMECNAVIWRTLLAACQMHGNVELGERVSSHVLEIVADHSSD--YVL 465
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRK 388
+ ++Y + +W + RK M + V K
Sbjct: 466 LANMYASSGQWNEMIKTRKSMHRKGVEK 493
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/365 (23%), Positives = 155/365 (42%), Gaps = 42/365 (11%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDEL 76
+ + K C+ +L + LH+ I++LGF +++V L+ V+ G +A +FD +
Sbjct: 59 MFLFKQCSTLKDL---NQLHASIIRLGFDQNLFVIGKLIDFCAVSDHGDMNYAVVVFDRI 115
Query: 77 PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFR 136
+ WNTMI+G+ ++ + A +F++RM
Sbjct: 116 ENADGFLWNTMIRGFGRNRKLLMAFEFYKRML---------------------------- 147
Query: 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA 196
+G+ D T +L LGS+ ++GK H I+K + + + L+ MY
Sbjct: 148 ----EKGIAADNFTFSFLLKMTGQLGSI--MLGKQLHVNILKLGLDSHVYVRNTLIHMYG 201
Query: 197 KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTG 256
+ + A +F+ + + ++++W A+I G +AL LF M +GV+P+E T
Sbjct: 202 RLKDVNIARNLFDELPKTDLVAWNAVIDCHVSCGMYNEALDLFVQMLQSGVEPDEATLVV 261
Query: 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE 316
++AC G +D GR ++ D I + ++D++ K G +E A E+ +
Sbjct: 262 TISACSALGALDCGRWVHSHVNSN-DRGKTIAVFNSLIDMYAKCGAVEYAREMFNAVS-G 319
Query: 317 PNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAER 376
N++ W + + H + A + L DG F + K E R
Sbjct: 320 KNIVTWNTMIMGLATHGDAEDALTLFSNMLAERVETPDGVTFLAVLCACNYGGKVEEGRR 379
Query: 377 VRKLM 381
LM
Sbjct: 380 YFDLM 384
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 98/236 (41%), Gaps = 36/236 (15%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF QM + V D +++ + +C+ L +HSH+ + V SL+
Sbjct: 241 LDLFVQMLQSGVEPDEATLVVTISACSALGALDCGRWVHSHVNSNDRGKTIAVFNSLIDM 300
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + +AR++F+ + +N VTWNTMI G + G+ +A
Sbjct: 301 YAKCGAVEYAREMFNAVSGKNIVTWNTMIMGLATHGDAEDA------------------- 341
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
L LF M++ TPD +T AVL C++ G V G+ + K+
Sbjct: 342 ------------LTLFSNMLAERVETPDGVTFLAVLCACNYGGKVE--EGRRYFDLMTKH 387
Query: 180 -EWELNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSE 233
+ + +VD+ + GF++ A + + M E N + W L+ G E
Sbjct: 388 FNIQPTLKHYGSMVDILGRAGFVEEAYQLIKSMPMECNAVIWRTLLAACQMHGNVE 443
>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
Length = 687
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 135/397 (34%), Positives = 216/397 (54%), Gaps = 10/397 (2%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV- 62
F +M +S ++ IL +CT +L +H +++ G +V+V+++L++ Y
Sbjct: 167 FRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYAS 226
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR----NVASWSAM 118
S A+ +FD + R+ V+WN +I Y + + F RM N ASW+A+
Sbjct: 227 CLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAV 286
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I + G + L++ M N G P+Q+TI +VL C++L S L GK HG+I +
Sbjct: 287 IGGCMQNGRTEKALEVLSRM-QNSGFKPNQITITSVLPACTNLES--LRGGKQIHGYIFR 343
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ + + T LV MYAKCG L+ + VF +M +R+ +SW +I ++ G E+AL L
Sbjct: 344 HWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLL 403
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F M +GV+PN +TFTGVL+ C H+ LVDEG F + ++ +EP H+ CMVD+
Sbjct: 404 FREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLS 463
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG LEEAYE I+ M +EP WG+ L C+ +K ++ R+ L ++ +N G +
Sbjct: 464 RAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVELG-RIAANRLFEIESDNPGN-Y 521
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++ + W A RKLM ++ V K G S I
Sbjct: 522 VLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSWI 558
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/362 (24%), Positives = 151/362 (41%), Gaps = 74/362 (20%)
Query: 8 HRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY--VVTS 65
H+ V D +L + K+C ++ +H ++ GF S V + +L+ Y S
Sbjct: 70 HKNCVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCS 129
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
G AR +F+ +P R+ ++W +M + Y+N
Sbjct: 130 EG-ARLVFEGMPFRDVISWTSM-------------------------------ASCYVNC 157
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
G L FR+M N G P+ +T+ ++L C+ L L G+ HGF+V+N N
Sbjct: 158 GLLREALGAFRKMGLN-GERPNSVTVSSILPACTDLKD--LKSGREVHGFVVRNGMGGNV 214
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALIC--------------------- 224
+++ LV+MYA C ++ A +VF+ M R+ +SW LI
Sbjct: 215 FVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSE 274
Query: 225 --------------GSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
G G +E AL + MQ +G KPN++T T VL AC + + G
Sbjct: 275 GVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGG 334
Query: 271 RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330
++ I + + + +V ++ K G LE + V +M + + + W + + A
Sbjct: 335 KQIHGYIFRHWFFQD-LTTTTALVFMYAKCGDLELSRRVF-SMMTKRDTVSWNTMIIATS 392
Query: 331 EH 332
H
Sbjct: 393 MH 394
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 101/202 (50%), Gaps = 5/202 (2%)
Query: 71 KLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDP 130
KL LP A+ + IK YS SG++ AR F+++P ++ +W+ +I+A G
Sbjct: 4 KLPTSLPPHLALKF---IKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLE 60
Query: 131 GLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATI 190
++ + + + PD++ + +V C+ L V + K H ++ + + +
Sbjct: 61 AIQYYNDFRHKNCVEPDKLLLLSVAKACASLRDV--MNAKRVHEDAIRFGFCSDVLLGNA 118
Query: 191 LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250
L+DMY KC + A +VFE M R+VISWT++ + G +AL F M G +PN
Sbjct: 119 LIDMYGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPN 178
Query: 251 EMTFTGVLTACVHTGLVDEGRK 272
+T + +L AC + GR+
Sbjct: 179 SVTVSSILPACTDLKDLKSGRE 200
>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
Length = 1984
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 137/395 (34%), Positives = 222/395 (56%), Gaps = 7/395 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LFS+M ++ + L + L+ ++H H+ K+G V++ +SL+
Sbjct: 301 LKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDL 360
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y R +FD + E+N V WN+M+ GYS +G + E + FE +P +N SW +I
Sbjct: 361 YCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTII 420
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A YL + L++F ++ + G TP++ T +VL C+ + S L G + HG I+K
Sbjct: 421 AGYLENEQCEKVLEVFNTLLVS-GQTPNKSTFSSVLCACASIAS--LDKGMNVHGKIIKL 477
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + + T L DMYAKCG + + VFE M E+N ISWT +I G A G++ ++L LF
Sbjct: 478 GIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILF 537
Query: 240 EMMQATG-VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
E M+ T V PNE+ VL AC H GLVD+G YF +++ Y ++P+ +HY C+VDL
Sbjct: 538 EEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLS 597
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
++G L EA E IRT+ +P W + L+ CK++K +AER K+ ++ EN+ +
Sbjct: 598 RSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQLA--ENNSAGY 655
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
L+ ++Y +W +RKLM + ++K+ G S
Sbjct: 656 VLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCS 690
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 111/384 (28%), Positives = 174/384 (45%), Gaps = 73/384 (19%)
Query: 13 PSDSF-----SILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY------ 61
P SF + + +LK ++ +T + LH+H++K GF S Y+A LL Y
Sbjct: 13 PKKSFRAYAQTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKF 72
Query: 62 -----VVTSFG---------------------FARKLFDELPERNAVTWNTMIKGYSKSG 95
+V F AR LFDE+PERN V+W+ +I G K G
Sbjct: 73 AEIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYG 132
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155
V E+ +FER P +NV SW+A I+ ++ G LKLF ++ + G+ P+ +T +V+
Sbjct: 133 RVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLES-GVRPNDVTFTSVV 191
Query: 156 SGCSHLGSVGLLMGKSAHGFIVK--------------------NEWELNEQIA------- 188
C LG GL G S G +VK E +L ++
Sbjct: 192 RACGELGDFGL--GMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRD 249
Query: 189 ----TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQA 244
T ++D Y + G L+ A +F+ M ERN ISW+A+I + GY+E+AL LF M
Sbjct: 250 VVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQ 309
Query: 245 TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLE 304
G KPN F L+A + G + + ++ + ++DL+ K G +
Sbjct: 310 EGFKPNISCFACTLSALASLRALSAGINIHGHVT-KIGIDKDVFIGSSLIDLYCKCGKPD 368
Query: 305 EAYEVIRTMRLEPNVIIWGSFLAA 328
+ ++ + LE NV+ W S +
Sbjct: 369 DG-RLVFDLILEKNVVCWNSMVGG 391
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 96/366 (26%), Positives = 168/366 (45%), Gaps = 43/366 (11%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH- 59
++LF ++ V + + ++++C + + + ++K GF ++ V+ SL+
Sbjct: 169 LKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITL 228
Query: 60 EYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
+ AR++FD + +R+ V+W ++ Y ++G++ EAR F+ MP RN SWSAMI
Sbjct: 229 SLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMI 288
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A Y +G + LKLF +M+ EG P+ LS + L + L G + HG + K
Sbjct: 289 ARYSQSGYAEEALKLFSKMV-QEGFKPNISCFACTLSALASLRA--LSAGINIHGHVTKI 345
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS------- 232
+ + I + L+D+Y KCG +VF+L+ E+NV+ W +++ G + G
Sbjct: 346 GIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEELF 405
Query: 233 ------------------------EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
E L +F + +G PN+ TF+ VL AC +D
Sbjct: 406 ELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLD 465
Query: 269 EGRKYFKMIDE---EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSF 325
+G I + +YD I + D++ K G + + +V M E N I W
Sbjct: 466 KGMNVHGKIIKLGIQYD----IFVGTALTDMYAKCGDIGSSKQVFERMP-EKNEISWTVM 520
Query: 326 LAACKE 331
+ E
Sbjct: 521 IQGLAE 526
>gi|255568986|ref|XP_002525463.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535276|gb|EEF36953.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 337
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 133/343 (38%), Positives = 204/343 (59%), Gaps = 15/343 (4%)
Query: 61 YVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y+ + F G A FDE+PE+N+VTWN MI G K G + AR FF+ MP +NV SW+ +I
Sbjct: 2 YLASGFLGNALLAFDEMPEKNSVTWNVMITGLVKWGKLEFARSFFDDMPEKNVVSWTGII 61
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL---SGCSHLGSVGLLMGKSAHGFI 176
Y+ GL LFR M+S EG+ P ++TI A+L SG L + GL+ H +
Sbjct: 62 DGYVRMNRITEGLALFRRMVSFEGIAPSEITILAILPAISGIGELQNCGLI-----HCLV 116
Query: 177 VKNEWELNE-QIATILVDMYAKCGFLKYALMVFELM--EERNVISWTALICGSAHRGYSE 233
K + ++ ++ ++D YAKCG + A FE + E +N++SWT++I G A G +
Sbjct: 117 EKRGFNSSDIRVTNSIIDTYAKCGCIVSASRFFEEISVERKNLVSWTSIISGFAMHGMGQ 176
Query: 234 DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293
+A+ FE M+ TG+KPN +TF VL AC H GLV EG ++F+ + +Y + P I+HYGC+
Sbjct: 177 EAVKRFENMERTGLKPNRVTFLSVLNACSHGGLVAEGHEFFEKMVNQYSILPDIKHYGCL 236
Query: 294 VDLFGKAGFLEEAYEVIRTMRLE-PNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE 352
VD+ G+ G LEEA ++ + E N +IW + L AC H ++ ERV ++ + M +
Sbjct: 237 VDMLGRTGRLEEAEKLALGIPSEIVNAVIWRTLLGACSFHGNSEIGERVTRKIMEMER-- 294
Query: 353 NDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
GG + L+ +++ ++E AER+R LM +N K G S++
Sbjct: 295 GYGGDYVLMYNIFAGVGRFEDAERLRVLMDERNAFKVPGHSLV 337
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
MY GFL AL+ F+ M E+N ++W +I G G E A S F+ M + N ++
Sbjct: 1 MYLASGFLGNALLAFDEMPEKNSVTWNVMITGLVKWGKLEFARSFFDDMP----EKNVVS 56
Query: 254 FTGVLTACVHTGLVDEGRKYFK 275
+TG++ V + EG F+
Sbjct: 57 WTGIIDGYVRMNRITEGLALFR 78
>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
Length = 773
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 131/395 (33%), Positives = 215/395 (54%), Gaps = 35/395 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ + +M ++ DSF++ +L +++ +H ++ G + VYVA+SL
Sbjct: 285 LTMVREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSL--- 341
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
I Y+K V ++ F + R+ SW+++IA
Sbjct: 342 ---------------------------IDMYAKCTRVVDSYRVFTLLTERDGISWNSIIA 374
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
+ G +D GLK FR+M+ + + P + +++ C+HL + L +GK HG+I +N
Sbjct: 375 GCVQNGLFDEGLKFFRQMLMAK-IKPKSYSFSSIMPACAHLTT--LHLGKQLHGYITRNG 431
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
++ N IA+ LVDMYAKCG ++ A +F+ M R+++SWTA+I G A G++ DA+ LFE
Sbjct: 432 FDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFE 491
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ G++PN + F VLTAC H GLVDE KYF + ++ + P ++HY + DL G+A
Sbjct: 492 QMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRA 551
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G LEEAY+ I M + P +W + L+AC+ HK DMAE+V + L V P+N G + L
Sbjct: 552 GRLEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILE-VDPKNTGA-YIL 609
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y+ +W+ A + R + +RK S I
Sbjct: 610 LANIYSAARRWKEAAKWRASLRRTGIRKTPACSWI 644
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 122/258 (47%), Gaps = 5/258 (1%)
Query: 75 ELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKL 134
E E A IK S S +V R FE MP +++ SW+ +IA G Y L +
Sbjct: 228 EYREMEACNLGQQIKDISHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTM 287
Query: 135 FREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDM 194
REM L PD T+ +VL + +V + GK HG ++ + +A+ L+DM
Sbjct: 288 VREM-GGANLKPDSFTLSSVLPLIAE--NVDISKGKEIHGCSIRQGLDAEVYVASSLIDM 344
Query: 195 YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTF 254
YAKC + + VF L+ ER+ ISW ++I G G ++ L F M +KP +F
Sbjct: 345 YAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSF 404
Query: 255 TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR 314
+ ++ AC H + G++ I + I +VD++ K G + A ++ MR
Sbjct: 405 SSIMPACAHLTTLHLGKQLHGYITRN-GFDENIFIASSLVDMYAKCGNIRTARQIFDRMR 463
Query: 315 LEPNVIIWGSFLAACKEH 332
L +++ W + + C H
Sbjct: 464 LR-DMVSWTAMIMGCALH 480
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 58/228 (25%)
Query: 22 ILKSCTHFNNLTVIHHLHSHILKL--------GFISHVYVATSLLHEYVVTSFGFARKLF 73
+L++ + + LH+ +LK + +Y +LLH+ + +LF
Sbjct: 14 LLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSL--------RLF 65
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
+ L A+ W ++I+ Y+ G +P +++ S+ M+A+
Sbjct: 66 NTLHFPPALAWKSVIRCYTSHG-----------LPHKSLGSFIGMLAS------------ 102
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
GL PD +VL C+ L + L +G+S HG+I++ + + L++
Sbjct: 103 ---------GLYPDHNVFPSVLKACAML--MDLNLGESLHGYIIRVGLDFDLYTGNALMN 151
Query: 194 MYAKCGFLKY-------ALMVFELMEERNVISWTA-LICGSAHRGYSE 233
MY+K FLK A V + M ER TA ++ G+ R S+
Sbjct: 152 MYSKLRFLKKSGRQRLGASQVLDEMTERTRSVRTASVLVGNQGRKVSD 199
>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
[Vitis vinifera]
Length = 643
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 129/395 (32%), Positives = 216/395 (54%), Gaps = 37/395 (9%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY- 61
L+ +M R+ VP + S ++KSC ++L +H+ IL+ G S + T+L+ Y
Sbjct: 155 LYREMRRRGVPPNPLSSSFVMKSCIRISSLMGGLQIHARILRDGHQSDNLLLTTLMDLYS 214
Query: 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
F A K+FDE+P+ W+T+ SW+ +I+
Sbjct: 215 CCDKFEEACKVFDEIPQ-----WDTV--------------------------SWNVLISC 243
Query: 122 YLNAGAYDPGLKLFREMISN-EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
++ L++F M S +G PD +T +L C++LG+ L G+ H +I ++
Sbjct: 244 CIHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQACANLGA--LEFGERVHNYIEEHG 301
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
++ + L+ MY++CG L+ A +F+ M+ERNV+SW+A+I G A GY +A+ FE
Sbjct: 302 YDGALNLCNSLITMYSRCGRLEKAYSIFKRMDERNVVSWSAMISGFAMHGYGREAIEAFE 361
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
MQ GV P++ T TGVL+AC H GLVD+G +F + + + +EP I HYGCMVDL G+A
Sbjct: 362 QMQQLGVSPDDQTLTGVLSACSHCGLVDDGLMFFDRMSKVFGIEPNIHHYGCMVDLLGRA 421
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G L++AY++I +M ++P+ +W + L AC+ H+ + ERVI + + E G + L
Sbjct: 422 GLLDQAYQLIMSMVIKPDSTLWRTLLGACRIHRHATLGERVIGHLIELKAQE--AGDYVL 479
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y+ W+ +RK M + ++ + G S I
Sbjct: 480 LLNIYSSVGNWDKVTDLRKFMKEKGIQTSPGCSTI 514
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/341 (22%), Positives = 162/341 (47%), Gaps = 45/341 (13%)
Query: 19 ILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT---SFGFARKLFDE 75
++ ++KSC+ +L IH +HI++ I + +++ L ++ G++ ++F +
Sbjct: 71 LISLIKSCSKKTHLLQIH---AHIIRTSLIQNHFISLQFLSRAALSPSRDMGYSSQVFSQ 127
Query: 76 LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF 135
+ + + +N MI+ YS S + + G L+
Sbjct: 128 IMKPSGSQYNVMIRAYSMSHSP-------------------------------EQGFYLY 156
Query: 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY 195
REM G+ P+ ++ V+ C + S L+ G H I+++ + + + T L+D+Y
Sbjct: 157 REM-RRRGVPPNPLSSSFVMKSCIRISS--LMGGLQIHARILRDGHQSDNLLLTTLMDLY 213
Query: 196 AKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT--GVKPNEMT 253
+ C + A VF+ + + + +SW LI H + DAL +F++MQ+T G +P+++T
Sbjct: 214 SCCDKFEEACKVFDEIPQWDTVSWNVLISCCIHNRRTRDALRMFDIMQSTADGFEPDDVT 273
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
+L AC + G ++ G + I EE+ + + ++ ++ + G LE+AY + + M
Sbjct: 274 CLLLLQACANLGALEFGERVHNYI-EEHGYDGALNLCNSLITMYSRCGRLEKAYSIFKRM 332
Query: 314 RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-VKPEN 353
E NV+ W + ++ H A +Q ++ V P++
Sbjct: 333 D-ERNVVSWSAMISGFAMHGYGREAIEAFEQMQQLGVSPDD 372
>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 580
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 139/397 (35%), Positives = 214/397 (53%), Gaps = 39/397 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+ M + +S++ +LK+C L LHS I+K+G
Sbjct: 92 IALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQIVKVGL------------- 138
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
F L N +IK Y+ G + A F+ MP + ASWS M++
Sbjct: 139 ------DFETPLV-----------NGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVS 181
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y G LKLFREM E ++ D T+ +V+ C LG++ L GK H ++ K
Sbjct: 182 GYAQNGQAVEALKLFREM-QAENVSSDAFTLASVVGVCGDLGALDL--GKWVHSYMDKEG 238
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+++ + T LV MY+KCG L AL VF+ M ER+V +W+ +I G A G+ E AL LF+
Sbjct: 239 VKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFD 298
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ + PN +TFT VL+AC H+GLV++G + F+ + EY + P+I+HYGCMVDLF +A
Sbjct: 299 AMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRA 358
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM--VKPENDGGVF 358
G + A++ I+TM +EPNV++W + L ACK H D+ E + ++ L++ PEN +
Sbjct: 359 GMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSPEN----Y 414
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y +W +VR LM ++ +K G S I
Sbjct: 415 VLVSNVYASLGRWSSVCQVRSLMKDKAPKKQHGWSSI 451
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/327 (26%), Positives = 146/327 (44%), Gaps = 42/327 (12%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARK 71
D S++ +K CT +L I +H+++ ++ + L+ VT G +A +
Sbjct: 6 DQGSLVAAIKRCTRVGDLKAIQ---AHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHR 62
Query: 72 LFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPG 131
+F N WNT+I+GYS S + P+ +A
Sbjct: 63 IFSCTHHPNLFMWNTIIRGYSISDS-----------PITAIA------------------ 93
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
L+R+M G++P+ T G VL C L + L G+ H IVK + + L
Sbjct: 94 --LYRDMFLC-GISPNSYTFGFVLKACCKL--LRLCEGQELHSQIVKVGLDFETPLVNGL 148
Query: 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE 251
+ +YA CG + YA ++F+ M E + SW+ ++ G A G + +AL LF MQA V +
Sbjct: 149 IKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQAENVSSDA 208
Query: 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR 311
T V+ C G +D G+ +D+E ++ + +V ++ K G L+ A +V +
Sbjct: 209 FTLASVVGVCGDLGALDLGKWVHSYMDKE-GVKIDVVLGTALVGMYSKCGSLDNALKVFQ 267
Query: 312 TMRLEPNVIIWGSFLAACKEHKQFDMA 338
M E +V W + +A H + A
Sbjct: 268 GM-AERDVTAWSTMIAGYAIHGHGEKA 293
>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
Length = 716
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 131/397 (32%), Positives = 227/397 (57%), Gaps = 10/397 (2%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+F MH + + D S+ +L + + + +H +++K G +V ++L+ Y
Sbjct: 197 MFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYG 256
Query: 63 VTSFGFARK-LFDELPERNAVTWNTMIKGYSKSGNVCEARDFFER---MPLRNVASWSAM 118
+ +F+E+ E + N ++ G S++G V A + F++ M L NV SW++M
Sbjct: 257 KCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDL-NVVSWTSM 315
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
IA+ G L+LFREM EG+ P+ +TI +L C ++ + LL GK+AH F ++
Sbjct: 316 IASCSQNGKDMEALELFREM-QIEGVKPNSVTIPCLLPACGNIAA--LLHGKAAHCFSLR 372
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
N + + + L+DMYAKCG + + + F++M RN++SW +L+ G A G + +A+++
Sbjct: 373 NGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINI 432
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
FE+MQ G KP+ ++FT VL+AC GL +EG YF + + +E R++HY CMV L G
Sbjct: 433 FELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCMVTLLG 492
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
++G LEEAY +I+ M EP+ +WG+ L++C+ H + D+ E K+ + +P N G +
Sbjct: 493 RSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIAAKRVFEL-EPRNPGN-Y 550
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y W + VR +M ++ ++K G S I
Sbjct: 551 ILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWI 587
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 99/408 (24%), Positives = 159/408 (38%), Gaps = 110/408 (26%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+++FS M Q + DS + ++K+C + L +H L G V +SLLH
Sbjct: 59 IRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHM 118
Query: 61 YV-VTSFGFARKLFDELP-----------------------------------ERNAVTW 84
YV AR +FD+LP E N V+W
Sbjct: 119 YVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSW 178
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
N MI G+++SG+ +A F+ M L EGL
Sbjct: 179 NGMISGFNRSGSYLDAVLMFQNMHL--------------------------------EGL 206
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC------ 198
PD ++ +VL L LMG H +++K ++ + + L+DMY KC
Sbjct: 207 KPDGTSVSSVLPAVGDLDMP--LMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEM 264
Query: 199 -------------------------GFLKYALMVFELME--ERNVISWTALICGSAHRGY 231
G + AL VF+ + + NV+SWT++I + G
Sbjct: 265 SGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGK 324
Query: 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKY--FKMIDEEYDLEPRIQH 289
+AL LF MQ GVKPN +T +L AC + + G+ F + + ++ +
Sbjct: 325 DMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRNGIFN---DVYV 381
Query: 290 YGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH-KQFD 336
++D++ K G + A + M N++ W S +A H K F+
Sbjct: 382 GSALIDMYAKCGRM-LASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFE 428
>gi|125526069|gb|EAY74183.1| hypothetical protein OsI_02067 [Oryza sativa Indica Group]
Length = 657
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 124/384 (32%), Positives = 227/384 (59%), Gaps = 9/384 (2%)
Query: 19 ILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPE 78
++ ++K+C+ + ++ LH+ ILK GF +H +V +L+H Y F ++ +L +
Sbjct: 279 LVGLVKACSRHSAVSEGQQLHTVILKNGFDAHAFVQATLIHYYGSCDFIDHSQMQFKLSD 338
Query: 79 RNAV-TWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
++ V +WN ++ + V EAR F+ MP R+ SWS +I+ Y+ +G + L++F
Sbjct: 339 KSHVASWNALMASLLRRNLVHEARQLFDDMPERDTISWSTLISGYVQSGNSNMALQIFCS 398
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
M+ + G+ P+++T+ + LS ++ G++G + H +I+ +L ++++ L+++YAK
Sbjct: 399 ML-DAGVEPNEITLASALSAVANSGTLG--QARWIHDYIISRSIQLTDKLSAGLINVYAK 455
Query: 198 CGFLKYALMVFELMEERN--VISWTALICGSAHRGYSEDALSLFEMMQAT-GVKPNEMTF 254
CG + A+ +F +++++ V W ++IC A GY +L LF +Q+T +KPN +T+
Sbjct: 456 CGSIAEAVQLFNHVKDKSISVSPWNSIICNLAIHGYVNMSLELFSQLQSTTNIKPNSITY 515
Query: 255 TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR 314
GVL AC H G+V EG++ F+ + ++Y ++P I+HYGCMVDL +AG+LEEA +I+TM
Sbjct: 516 LGVLNACCHAGMVAEGKRQFESMRQQYGIQPEIKHYGCMVDLLCRAGYLEEAELLIKTMP 575
Query: 315 LEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGA 374
++ +V+ WG LAA + + E+ ++ L + P + G + +LY W
Sbjct: 576 MKADVVAWGCILAAARTQGNVALGEKAAEE-LSKLDPSH-GASKIALSNLYADAGHWSNV 633
Query: 375 ERVRKLMLNQNVRKARGSSVISSL 398
VRK + N+N+ + GSS I L
Sbjct: 634 SVVRKELQNENLERLTGSSGILQL 657
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 104/419 (24%), Positives = 188/419 (44%), Gaps = 45/419 (10%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKS--CTHFNNLTVIHHLHSHILKLGFISHVYVATSLL 58
+ +F M ++V + ++ +L + C H + H ++ G V VAT+L+
Sbjct: 127 LAVFRDMLTEAVQPNEVTLAEVLTAMACDH-GAPAPVGAAHGVAVRRGLDGFVIVATNLV 185
Query: 59 HEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
H Y V+ AR +F+ +P+RN VTWNTM+ Y K+G + A + F +P R+ SW
Sbjct: 186 HAYGAVSQVPSARSIFELMPDRNTVTWNTMLNCYVKAGMINMAAEVFGVIPERDEVSWLT 245
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MI Y+ A L+ + M+ G+ +++ + ++ CS +V G+ H I+
Sbjct: 246 MIDGYMCADFLLQALRTYVAMVGTVGIRANEVILVGLVKACSRHSAVS--EGQQLHTVIL 303
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFEL--------------------------- 210
KN ++ + + L+ Y C F+ ++ M F+L
Sbjct: 304 KNGFDAHAFVQATLIHYYGSCDFIDHSQMQFKLSDKSHVASWNALMASLLRRNLVHEARQ 363
Query: 211 ----MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
M ER+ ISW+ LI G G S AL +F M GV+PNE+T L+A ++G
Sbjct: 364 LFDDMPERDTISWSTLISGYVQSGNSNMALQIFCSMLDAGVEPNEITLASALSAVANSGT 423
Query: 267 VDEGR-KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEP-NVIIWGS 324
+ + R + +I L ++ +++++ K G + EA ++ ++ + +V W S
Sbjct: 424 LGQARWIHDYIISRSIQLTDKLS--AGLINVYAKCGSIAEAVQLFNHVKDKSISVSPWNS 481
Query: 325 FLAACKEHKQFDMAERVIK--QALRMVKPENDG--GVFTLICDLYTMNEKWEGAERVRK 379
+ H +M+ + Q+ +KP + GV C + E E +R+
Sbjct: 482 IICNLAIHGYVNMSLELFSQLQSTTNIKPNSITYLGVLNACCHAGMVAEGKRQFESMRQ 540
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 85/347 (24%), Positives = 163/347 (46%), Gaps = 47/347 (13%)
Query: 37 HLHSHILKLGFI-SHVYVATSLLHEYVVTSFGFARKLFDELPE--RNAVTWNTMIKGYSK 93
LH+ K G + S+++V SLL Y + A LFDE+P R+A N ++ ++
Sbjct: 29 QLHALAAKSGLLTSNLFVRNSLLAFYSRVAPSLAYHLFDEIPPLLRDATAHNILLSALAR 88
Query: 94 SGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGA 153
+G + A+ MP R+ S++ +I+A +G + L +FR+M++ E + P+++T+
Sbjct: 89 AGRLERAQCLLAEMPQRDAVSFTTVISALSRSGHPERALAVFRDMLT-EAVQPNEVTLAE 147
Query: 154 VLS--GCSH-----LGSV-GLLMGKSAHGFIV------------------KNEWELNEQI 187
VL+ C H +G+ G+ + + GF++ ++ +EL
Sbjct: 148 VLTAMACDHGAPAPVGAAHGVAVRRGLDGFVIVATNLVHAYGAVSQVPSARSIFELMPDR 207
Query: 188 ATI----LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQ 243
T+ +++ Y K G + A VF ++ ER+ +SW +I G + AL + M
Sbjct: 208 NTVTWNTMLNCYVKAGMINMAAEVFGVIPERDEVSWLTMIDGYMCADFLLQALRTYVAMV 267
Query: 244 AT-GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI-DEEYDLEPRIQHYGCMVDLFGKAG 301
T G++ NE+ G++ AC V EG++ +I +D +Q ++ +G
Sbjct: 268 GTVGIRANEVILVGLVKACSRHSAVSEGQQLHTVILKNGFDAHAFVQ--ATLIHYYGSCD 325
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAA------CKEHKQF--DMAER 340
F++ + + + + +V W + +A+ E +Q DM ER
Sbjct: 326 FIDHSQMQFK-LSDKSHVASWNALMASLLRRNLVHEARQLFDDMPER 371
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 10/178 (5%)
Query: 190 ILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP 249
IL+ A+ G L+ A + M +R+ +S+T +I + G+ E AL++F M V+P
Sbjct: 81 ILLSALARAGRLERAQCLLAEMPQRDAVSFTTVISALSRSGHPERALAVFRDMLTEAVQP 140
Query: 250 NEMTFTGVLT--ACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
NE+T VLT AC H G + + L+ + +V +G + A
Sbjct: 141 NEVTLAEVLTAMACDHGAPAPVGAAHGVAV--RRGLDGFVIVATNLVHAYGAVSQVPSAR 198
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365
+ M + N + W + L + +MA V V PE D + + D Y
Sbjct: 199 SIFELMP-DRNTVTWNTMLNCYVKAGMINMAAEVFG-----VIPERDEVSWLTMIDGY 250
>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
Length = 760
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 127/398 (31%), Positives = 224/398 (56%), Gaps = 10/398 (2%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY- 61
+F MH + D +I +L + +L + +H +++K G +S V+++L+ Y
Sbjct: 237 MFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYG 296
Query: 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR----NVASWSA 117
+ ++FD++ + + N I G S++G V + F ++ + NV SW++
Sbjct: 297 KCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTS 356
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MIA G L+LFREM G+ P+ +TI +L C ++ + L+ GK+AH F +
Sbjct: 357 MIACCSQNGRDMEALELFREM-QIAGVKPNSVTIPCLLPACGNIAA--LMHGKAAHCFSL 413
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
+ + + + L+DMYAKCG ++ + + F+ + +N++ W A+I G A G +++A+
Sbjct: 414 RRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAME 473
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
+F++MQ +G KP+ ++FT VL+AC +GL +EG YF + +Y +E R++HY CMV L
Sbjct: 474 IFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLL 533
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
+AG LE+AY +IR M + P+ +WG+ L++C+ H + E V + L ++P N G
Sbjct: 534 SRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGE-VAAEKLFELEPSNPGN- 591
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ ++Y W RVR +M N+ +RK G S I
Sbjct: 592 YILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWI 629
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/390 (25%), Positives = 172/390 (44%), Gaps = 58/390 (14%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ FSQM + + D+ + +K+C + L +H GF S +V +SL+H
Sbjct: 99 LSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHM 158
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP----LRNVASW 115
Y+ A ++FD + E + V+W+ ++ Y++ G V EA+ F M N+ SW
Sbjct: 159 YIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISW 218
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
+ MIA + ++G Y + +F +M G PD TI +VL L L+MG HG+
Sbjct: 219 NGMIAGFNHSGLYSEAVLMFLDM-HLRGFEPDGTTISSVLPAVGDLED--LVMGILIHGY 275
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME----------------------- 212
++K ++ +++ L+DMY KC VF+ M+
Sbjct: 276 VIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESS 335
Query: 213 ------------ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260
E NV+SWT++I + G +AL LF MQ GVKPN +T +L A
Sbjct: 336 LRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCLLPA 395
Query: 261 CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA---YEVIRTMRLEP 317
C + + G K + + ++D++ K G ++ + ++ I T
Sbjct: 396 CGNIAALMHG-KAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPT----K 450
Query: 318 NVIIWGSFLAACKEHKQ-------FDMAER 340
N++ W + +A H + FD+ +R
Sbjct: 451 NLVCWNAVIAGYAMHGKAKEAMEIFDLMQR 480
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 122/258 (47%), Gaps = 37/258 (14%)
Query: 18 SILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT-SFGFARKLFDEL 76
+IL+ L S T +L+ H+HILK G + ++AT LL Y F A + D +
Sbjct: 17 TILNCLNSTT--ASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLV 74
Query: 77 PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFR 136
PE N +++T+I +SK F + + L F
Sbjct: 75 PEPNVFSFSTLIYAFSK----------FHQ---------------------FHHALSTFS 103
Query: 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA 196
+M++ GL PD + + + C+ L + L + HG + ++ + + + LV MY
Sbjct: 104 QMLT-RGLMPDNRVLPSAVKACAGLSA--LKPARQVHGIASVSGFDSDSFVQSSLVHMYI 160
Query: 197 KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTG 256
KC ++ A VF+ M E +V+SW+AL+ A +G ++A LF M +GV+PN +++ G
Sbjct: 161 KCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNG 220
Query: 257 VLTACVHTGLVDEGRKYF 274
++ H+GL E F
Sbjct: 221 MIAGFNHSGLYSEAVLMF 238
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 4/188 (2%)
Query: 158 CSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVI 217
C + + L + AH I+K + +AT L+ YA A +V +L+ E NV
Sbjct: 21 CLNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVF 80
Query: 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI 277
S++ LI + ALS F M G+ P+ + AC + R+ +
Sbjct: 81 SFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIA 140
Query: 278 D-EEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFD 336
+D + +Q +V ++ K + +A+ V M EP+V+ W + +AA D
Sbjct: 141 SVSGFDSDSFVQ--SSLVHMYIKCNQIRDAHRVFDRM-FEPDVVSWSALVAAYARQGCVD 197
Query: 337 MAERVIKQ 344
A+R+ +
Sbjct: 198 EAKRLFSE 205
>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
Length = 758
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 128/398 (32%), Positives = 224/398 (56%), Gaps = 10/398 (2%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+F MH + D +I +L + +L + +H +++K G +S V+++L+ Y
Sbjct: 237 MFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYG 296
Query: 63 VTSFGFA-RKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR----NVASWSA 117
S ++FD++ + + N I G S++G V + F ++ + NV SW++
Sbjct: 297 KCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTS 356
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MIA G L+LFREM G+ P+ +TI +L C ++ + L+ GK+AH F +
Sbjct: 357 MIACCSQNGRDIEALELFREM-QIAGVKPNSVTIPCLLPACGNIAA--LMHGKAAHCFSL 413
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
+ + + + L+DMYAKCG ++ + + F+ + +N++ W A+I G A G +++A+
Sbjct: 414 RRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAME 473
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
+F++MQ +G KP+ ++FT VL+AC +GL +EG YF + +Y +E R++HY CMV L
Sbjct: 474 IFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLL 533
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
+AG LE+AY +IR M + P+ +WG+ L++C+ H + E V + L ++P N G
Sbjct: 534 SRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGE-VAAEKLFELEPSNPGN- 591
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ ++Y W RVR +M N+ +RK G S I
Sbjct: 592 YILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWI 629
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/390 (25%), Positives = 172/390 (44%), Gaps = 58/390 (14%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ FSQM + + D+ + +K+C + L +H GF S +V +SL+H
Sbjct: 99 LSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHM 158
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP----LRNVASW 115
Y+ A ++FD + E + V+W+ ++ Y++ G V EA+ F M N+ SW
Sbjct: 159 YIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISW 218
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
+ MIA + ++G Y + +F +M G PD TI +VL L L+MG HG+
Sbjct: 219 NGMIAGFNHSGLYSEAVLMFLDM-HLRGFEPDGTTISSVLPAVGDLED--LVMGILIHGY 275
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME----------------------- 212
++K ++ +++ L+DMY KC VF+ M+
Sbjct: 276 VIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESS 335
Query: 213 ------------ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260
E NV+SWT++I + G +AL LF MQ GVKPN +T +L A
Sbjct: 336 LRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPA 395
Query: 261 CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA---YEVIRTMRLEP 317
C + + G K + + ++D++ K G ++ + ++ I T
Sbjct: 396 CGNIAALMHG-KAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPT----K 450
Query: 318 NVIIWGSFLAACKEHKQ-------FDMAER 340
N++ W + +A H + FD+ +R
Sbjct: 451 NLVCWNAVIAGYAMHGKAKEAMEIFDLMQR 480
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 122/260 (46%), Gaps = 37/260 (14%)
Query: 18 SILHILKSCTHFN--NLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT-SFGFARKLFD 74
S+ H + +C + +L+ H+HILK G + ++AT LL Y F A + D
Sbjct: 13 SVQHTIFNCLNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLD 72
Query: 75 ELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKL 134
+PE N +++T+I +SK F + + L
Sbjct: 73 LVPEPNVFSFSTLIYAFSK----------FHQ---------------------FHHALST 101
Query: 135 FREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDM 194
F +M++ GL PD + + + C+ L + L + HG + ++ + + + LV M
Sbjct: 102 FSQMLT-RGLMPDNRVLPSAVKACAGLSA--LKPARQVHGIASVSGFDSDSFVQSSLVHM 158
Query: 195 YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTF 254
Y KC ++ A VF+ M E +V+SW+AL+ A +G ++A LF M +GV+PN +++
Sbjct: 159 YIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISW 218
Query: 255 TGVLTACVHTGLVDEGRKYF 274
G++ H+GL E F
Sbjct: 219 NGMIAGFNHSGLYSEAVLMF 238
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 4/188 (2%)
Query: 158 CSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVI 217
C + + L + AH I+K + +AT L+ YA A +V +L+ E NV
Sbjct: 21 CLNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVF 80
Query: 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI 277
S++ LI + ALS F M G+ P+ + AC + R+ +
Sbjct: 81 SFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIA 140
Query: 278 D-EEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFD 336
+D + +Q +V ++ K + +A+ V M EP+V+ W + +AA D
Sbjct: 141 SVSGFDSDSFVQ--SSLVHMYIKCNQIRDAHRVFDRM-FEPDVVSWSALVAAYARQGCVD 197
Query: 337 MAERVIKQ 344
A+R+ +
Sbjct: 198 EAKRLFSE 205
>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 705
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 127/395 (32%), Positives = 215/395 (54%), Gaps = 30/395 (7%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++ ++ M R +V + F+ +LK+C L + +H+ ++K GF +V +L+H
Sbjct: 212 LRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHASMVKFGFEEDPHVRNTLVHM 271
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
Y S A+ F+ P+++ +WSAMI
Sbjct: 272 YCCCC-------------------------QDGSSGPVSAKKVFDESPVKDSVTWSAMIG 306
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y AG + LFREM G+ PD++T+ +VLS C+ LG+ L +GK +I +
Sbjct: 307 GYARAGNSARAVTLFREM-QVTGVCPDEITMVSVLSACADLGA--LELGKWLESYIERKN 363
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ ++ L+DM+AKCG + A+ VF M+ R ++SWT++I G A G +A+ +F+
Sbjct: 364 IMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFD 423
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M GV P+++ F GVL+AC H+GLVD+G YF ++ + + P+I+HYGCMVD+ +A
Sbjct: 424 EMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHYGCMVDMLSRA 483
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G + EA E +R M +EPN +IW S + AC + + E V K+ +R +P ++ + L
Sbjct: 484 GRVNEALEFVRAMPVEPNQVIWRSIVTACHARGELKLGESVAKELIRR-EPSHESN-YVL 541
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y +WE +VR++M + +RK GS++I
Sbjct: 542 LSNIYAKLLRWEKKTKVREMMDVKGMRKIPGSTMI 576
>gi|115444423|ref|NP_001045991.1| Os02g0164600 [Oryza sativa Japonica Group]
gi|49388051|dbj|BAD25165.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|49388408|dbj|BAD25541.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535522|dbj|BAF07905.1| Os02g0164600 [Oryza sativa Japonica Group]
gi|125538213|gb|EAY84608.1| hypothetical protein OsI_05976 [Oryza sativa Indica Group]
gi|125580926|gb|EAZ21857.1| hypothetical protein OsJ_05503 [Oryza sativa Japonica Group]
gi|215737275|dbj|BAG96204.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 476
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 132/399 (33%), Positives = 219/399 (54%), Gaps = 37/399 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+QLF QM + V +D +++ ++ +C+ + + LH L+LG+ S ++ T+L++
Sbjct: 106 LQLFDQMRHRGVTTDRYTLPFLIHACSS-GDRPLCESLHGQSLRLGYSSVLFTQTALMNA 164
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
Y F A AR F+ M ++V +W+ M++
Sbjct: 165 YFACRFEVA------------------------------ARRVFDEMQAKDVVAWTGMVS 194
Query: 121 AYLNAGAYDPGLKLFREMIS-NEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
Y+++G + G+++F+EM S E + P+ T+ +V S C+ LGS L K H ++ K
Sbjct: 195 GYVDSGMFLRGVEVFQEMRSCEEAVRPNVATVVSVASACAGLGS--LEYAKGLHAYVEKV 252
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
E + L+DMY KCG ++ A +F LM ++++ SWTA+I G A G+ ++A++LF
Sbjct: 253 GLEGELIVKNSLIDMYGKCGSIELARGLFGLMPQKDLHSWTAMISGLASHGHGKEAVALF 312
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M+ GV P+ TF VL+AC H GLVDEG F ++ EY + P I+HYGCMVDLF +
Sbjct: 313 FSMKEAGVLPDSTTFVVVLSACSHAGLVDEGISIFNSMENEYKVTPDIKHYGCMVDLFSR 372
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG + Y+ I +M EPN+ I G+ L+AC + + D+ E VIK+ + V+ + GG
Sbjct: 373 AGLIARGYQFIESMPFEPNLAILGALLSACSINNELDIGELVIKR-IESVR-SDKGGAGV 430
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNV-RKARGSSVISS 397
L+ ++Y W + +R+ + + + RK G SVI+S
Sbjct: 431 LLSNIYANQNLWHEVDSLRRKIRDDTICRKPPGQSVITS 469
>gi|449465220|ref|XP_004150326.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like [Cucumis sativus]
Length = 874
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 131/394 (33%), Positives = 224/394 (56%), Gaps = 8/394 (2%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+S M + + + I+ +L +C ++ HS I+K GF+ ++ +++ Y
Sbjct: 483 LYSAMRKSDLHPNEVLIVDLLSACGQSVSIEEGRQFHSLIVKNGFVCFDFIQATIISFYA 542
Query: 63 VTSFGFARKLFDELPERNAVTW-NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
L ++ +++ +T N MI G++K+G + +AR F+ MP ++V SWS MI+
Sbjct: 543 ACRRIDLAYLQYQMSDKSHLTSSNVMIVGFTKNGMIDQARQIFDMMPEKDVFSWSTMISG 602
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y D L LF MI ++ + P+++T+ +V S + LG L G+ AH ++
Sbjct: 603 YAQNELPDVALDLFHGMIDSK-VEPNEITMVSVFSAIAALGK--LPEGRWAHEYVCNKVI 659
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERN--VISWTALICGSAHRGYSEDALSLF 239
LN+ ++ ++DMYAKCG + AL VF ++++ V W A+ICG A G++ +L +F
Sbjct: 660 PLNDNLSAAIIDMYAKCGSIDTALDVFRQIKDKTSTVSPWNAIICGLAMHGHANLSLEIF 719
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+Q +K N +TF GVL+AC H GLV+ G +YF + ++ +EP I+HYGC+VDL G+
Sbjct: 720 SNLQRRSIKLNSITFLGVLSACCHAGLVEVGERYFWSMKTQHGVEPNIKHYGCLVDLLGR 779
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
G L EA E++RTM ++ +V+IWG+ LA+ + H + ++ ER + R+ G V
Sbjct: 780 VGRLREAEEIVRTMPMKADVVIWGTLLASSRTHGEVEIGERAAENLARLQPSHGPGRV-- 837
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
L+ +LY WE A VR+ + +Q + ++ G S
Sbjct: 838 LLSNLYADAGLWEDAALVRRAIQSQRMIRSPGYS 871
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 109/385 (28%), Positives = 187/385 (48%), Gaps = 47/385 (12%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+++F M V + ++ ++ +C+H + LH+ ++KL F V ++T+LLH
Sbjct: 349 IEVFKDMRSAGVAPNEVTMASVMSACSHIGGIWNCRMLHALVIKLHFFGLVLISTNLLHM 408
Query: 61 YVV-TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y V +S ++LF+E+P RN V+WN M+KGY KSG V +AR+ FER+P R+V SW+ MI
Sbjct: 409 YCVFSSLKDTKRLFNEMPVRNTVSWNVMLKGYVKSGLVDQARELFERIPERDVFSWAIMI 468
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
++ L L+ M ++ L P+++ I +LS C SV + G+ H IVKN
Sbjct: 469 DGFVQMKRLRKALLLYSAMRKSD-LHPNEVLIVDLLSACGQ--SVSIEEGRQFHSLIVKN 525
Query: 180 EWELNEQIATILVDMYAKC-------------------------------GFLKYALMVF 208
+ + I ++ YA C G + A +F
Sbjct: 526 GFVCFDFIQATIISFYAACRRIDLAYLQYQMSDKSHLTSSNVMIVGFTKNGMIDQARQIF 585
Query: 209 ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
++M E++V SW+ +I G A + AL LF M + V+PNE+T V +A G +
Sbjct: 586 DMMPEKDVFSWSTMISGYAQNELPDVALDLFHGMIDSKVEPNEITMVSVFSAIAALGKLP 645
Query: 269 EGR---KYF--KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVI-IW 322
EGR +Y K+I +L I +D++ K G ++ A +V R ++ + + + W
Sbjct: 646 EGRWAHEYVCNKVIPLNDNLSAAI------IDMYAKCGSIDTALDVFRQIKDKTSTVSPW 699
Query: 323 GSFLAACKEHKQFDMAERVIKQALR 347
+ + H +++ + R
Sbjct: 700 NAIICGLAMHGHANLSLEIFSNLQR 724
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 141/293 (48%), Gaps = 35/293 (11%)
Query: 17 FSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSF-GFARKLFDE 75
S++ LK C + ++ +H+ +LK GF S+ ++ SL++ YV AR LFD
Sbjct: 233 LSVVSALKYCASSSAISSGQQIHAIVLKYGFNSNTFILNSLINMYVKCGLLSSARLLFDS 292
Query: 76 LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF 135
++V+ N M+ GY K + AR F +MP R S++ MI + +++F
Sbjct: 293 CSVLDSVSCNIMMSGYVKLRQLENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAIEVF 352
Query: 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK----------------- 178
++M S G+ P+++T+ +V+S CSH+G G+ + H ++K
Sbjct: 353 KDMRS-AGVAPNEVTMASVMSACSHIG--GIWNCRMLHALVIKLHFFGLVLISTNLLHMY 409
Query: 179 -------------NEWELNEQIA-TILVDMYAKCGFLKYALMVFELMEERNVISWTALIC 224
NE + ++ +++ Y K G + A +FE + ER+V SW +I
Sbjct: 410 CVFSSLKDTKRLFNEMPVRNTVSWNVMLKGYVKSGLVDQARELFERIPERDVFSWAIMID 469
Query: 225 GSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI 277
G AL L+ M+ + + PNE+ +L+AC + ++EGR++ +I
Sbjct: 470 GFVQMKRLRKALLLYSAMRKSDLHPNEVLIVDLLSACGQSVSIEEGRQFHSLI 522
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 34/166 (20%)
Query: 131 GLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATI 190
GL R+ S+ L ++++ + L C+ S + G+ H ++K + N I
Sbjct: 216 GLNGGRDQPSSSSLDC-ELSVVSALKYCA--SSSAISSGQQIHAIVLKYGFNSNTFILNS 272
Query: 191 LVDMYAKCGFLKYALMVFE-------------------------------LMEERNVISW 219
L++MY KCG L A ++F+ M ER +S+
Sbjct: 273 LINMYVKCGLLSSARLLFDSCSVLDSVSCNIMMSGYVKLRQLENARQLFAKMPERGCVSY 332
Query: 220 TALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG 265
T +I G A +A+ +F+ M++ GV PNE+T V++AC H G
Sbjct: 333 TTMILGLAQNDCWGEAIEVFKDMRSAGVAPNEVTMASVMSACSHIG 378
>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 125/381 (32%), Positives = 213/381 (55%), Gaps = 34/381 (8%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFD 74
DS +++ +L +C+ +N V +H +K+G + V
Sbjct: 191 DSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVE-------------------- 230
Query: 75 ELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKL 134
NT++ Y+K G V +R F+ M ++V SW++MIA Y G ++
Sbjct: 231 ----------NTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEV 280
Query: 135 FREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDM 194
F M+ G +++T+ +L C+H G+ L +G H ++K + N +AT ++DM
Sbjct: 281 FHGMLKAGGGKYNEVTLSTLLLACAHEGA--LRVGMCLHDQVIKMGYVNNVIMATSIIDM 338
Query: 195 YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTF 254
Y KCG + A F+ M+E+NV SWTA+I G G++ +AL +F M GVKPN +TF
Sbjct: 339 YCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITF 398
Query: 255 TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR 314
VL AC H G ++EG ++F + EY++EP ++HYGCMVDL G+AG+++EAY +I++M+
Sbjct: 399 ISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMK 458
Query: 315 LEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGA 374
+ + ++WGS LAAC+ HK ++AE ++ ++ P N G + L+ ++Y +W+
Sbjct: 459 VRRDFVLWGSLLAACRIHKDVELAEISARELFKL-DPSN-CGYYVLLANIYADAGRWKDV 516
Query: 375 ERVRKLMLNQNVRKARGSSVI 395
ER+R L+ ++ + K G S++
Sbjct: 517 ERMRILVKDRGLVKPPGYSLV 537
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 98/371 (26%), Positives = 162/371 (43%), Gaps = 74/371 (19%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++ FS M + + + + +KSC+ +L H L GF S ++V+++L
Sbjct: 67 LRAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNSGKQAHQQALVFGFESDLFVSSAL--- 123
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
I YSK G + AR F+ +P RN+ +W+++I
Sbjct: 124 ---------------------------IDMYSKCGKLSNARVLFDEIPRRNIVTWTSLIT 156
Query: 121 AYLNAGAYDPGLKLFREMISNE--------GLTPDQMTIGAVLSGCSHLGSVGLLMGKSA 172
Y+ L +F+E + + G + D + + +VLS CS + + + G
Sbjct: 157 GYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEG--V 214
Query: 173 HGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
HG +K + + L+D YAKCG + + VF+ M E++V+SW ++I A G S
Sbjct: 215 HGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLS 274
Query: 233 EDALSLFE-MMQATGVKPNEMTFTGVLTACVHTGLVDEG----RKYFKM----------- 276
DA +F M++A G K NE+T + +L AC H G + G + KM
Sbjct: 275 TDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATS 334
Query: 277 -ID------------EEYD--LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM---RLEPN 318
ID +D E ++ + M+ +G GF EA +V M ++PN
Sbjct: 335 IIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPN 394
Query: 319 VIIWGSFLAAC 329
I + S LAAC
Sbjct: 395 YITFISVLAAC 405
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 111/236 (47%), Gaps = 21/236 (8%)
Query: 103 FFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLG 162
+F+R +V SW+++IA G L+ F M + + P++ T + CS L
Sbjct: 41 YFDRT---DVYSWNSLIAELARGGDSCESLRAFSWMRKLD-IKPNRSTFPCAIKSCSAL- 95
Query: 163 SVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTAL 222
L GK AH + +E + +++ L+DMY+KCG L A ++F+ + RN+++WT+L
Sbjct: 96 -FDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSL 154
Query: 223 ICGSAHRGYSEDALSLFEMM---------QATGVKPNEMTFTGVLTAC--VHTGLVDEGR 271
I G + +AL +F+ + G + + VL+AC V V EG
Sbjct: 155 ITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEG- 213
Query: 272 KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLA 327
+ + L+ + ++D + K G + + +V M E +V+ W S +A
Sbjct: 214 --VHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMA-EKDVVSWNSMIA 266
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 131/402 (32%), Positives = 221/402 (54%), Gaps = 37/402 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF +M + +V D + + +L +C H ++ + +HS + GF S++ +
Sbjct: 181 LELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIV------ 234
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
N +I YSK G V A F+ + ++V SW+ +I
Sbjct: 235 ------------------------NALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIG 270
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y + Y L LF+EM+ + G TP+ +T+ +VL C+HLG++ + G+ H +I K
Sbjct: 271 GYTHMNLYKEALLLFQEMLRS-GETPNDVTMLSVLPACAHLGAIDI--GRWIHVYIDKRL 327
Query: 181 WELNE--QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ + T L+DMYAKCG ++ A VF M +++ SW A+I G A G ++ + L
Sbjct: 328 KGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDL 387
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F M+ G++P+++TF G+L+AC H+G++D GR F+ + ++Y + P+++HYGCM+DL G
Sbjct: 388 FSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLG 447
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+G +EA E+I TM +EP+ +IW S L ACK H ++AE Q L ++PEN +
Sbjct: 448 HSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAES-FAQNLIKIEPENPSS-Y 505
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLSV 400
L+ ++Y +WE R+R L+ + ++K G S I SV
Sbjct: 506 ILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSV 547
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 112/346 (32%), Positives = 186/346 (53%), Gaps = 7/346 (2%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT-SFGFARKLF 73
+S++ +LKSC T +H +LKLGF +YV TSL+ YV A K+F
Sbjct: 63 NSYTFPFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVF 122
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
D R+ V++ +I GY+ G++ A+ F+ +P+++V SW+AMI+ Y G Y L+
Sbjct: 123 DRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALE 182
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
LF EM+ + PD+ T VLS C+H GS+ L G+ H ++ + ++ N +I L+D
Sbjct: 183 LFEEMM-KMNVRPDESTYVTVLSACAHSGSIEL--GRQVHSWVDDHGFDSNLKIVNALID 239
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
+Y+KCG ++ A +F+ + ++VISW LI G H ++AL LF+ M +G PN++T
Sbjct: 240 LYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVT 299
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYD-LEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312
VL AC H G +D GR ID+ + ++D++ K G +E A++V +
Sbjct: 300 MLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNS 359
Query: 313 MRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
M L ++ W + + H + D + + + +R + E D F
Sbjct: 360 M-LHKSLSSWNAMIFGFAMHGRADASFDLFSR-MRKIGIEPDDITF 403
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 146/308 (47%), Gaps = 33/308 (10%)
Query: 68 FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
+A +F+ + E N + WNTMI+G++ S + P+ ++ + M++ L +
Sbjct: 16 YATSVFETIQEPNQLIWNTMIRGHALSSD-----------PVSSLTLYVCMVSLGLLPNS 64
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLG-SVGLLMGKSAHGFIVKNEWELNEQ 186
Y L + ++ T Q G VL LG + L + S V+N W L +
Sbjct: 65 YTFPF-LLKSCAKSKTFTEGQQIHGQVLK----LGFDLDLYVHTSLISMYVQN-WRLEDA 118
Query: 187 IA-------------TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE 233
T L+ YA G ++ A +F+ + ++V+SW A+I G A G +
Sbjct: 119 YKVFDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYK 178
Query: 234 DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293
+AL LFE M V+P+E T+ VL+AC H+G ++ GR+ +D ++ + ++ +
Sbjct: 179 EALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVD-DHGFDSNLKIVNAL 237
Query: 294 VDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353
+DL+ K G +E A + + + + +VI W + + + A + ++ LR + N
Sbjct: 238 IDLYSKCGEVETACGLFQGLSYK-DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPN 296
Query: 354 DGGVFTLI 361
D + +++
Sbjct: 297 DVTMLSVL 304
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 201 LKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260
L YA VFE ++E N + W +I G A +L+L+ M + G+ PN TF +L +
Sbjct: 14 LPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKS 73
Query: 261 CVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEV 309
C + EG++ + +++ +DL+ + + ++ ++ + LE+AY+V
Sbjct: 74 CAKSKTFTEGQQIHGQVLKLGFDLDLYV--HTSLISMYVQNWRLEDAYKV 121
>gi|224092607|ref|XP_002309680.1| predicted protein [Populus trichocarpa]
gi|222855656|gb|EEE93203.1| predicted protein [Populus trichocarpa]
Length = 500
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 139/444 (31%), Positives = 225/444 (50%), Gaps = 65/444 (14%)
Query: 14 SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS-FGFARKL 72
+D+F+ +LK+ +++ + LH +K GF SHV+V T+LL+ Y S A K+
Sbjct: 48 ADNFTFPILLKAAGSWSSPCIGLALHGQTIKAGFSSHVFVQTALLNMYRSHSCVADACKV 107
Query: 73 FDELPERNAVTWNT-------------------------------MIKGYSKSGNVCEAR 101
F+++P ++ V WN+ MI GYS G AR
Sbjct: 108 FEKMPVKDVVAWNSILDAYASTDQMDDALKVFNSMPLKDLSSFNIMISGYSSIGKTLSAR 167
Query: 102 DFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLT---------------- 145
F+ M +++ SW++MI+AY+ + LFREM + +T
Sbjct: 168 SIFDNMAEKDIVSWNSMISAYIQGEDMERACDLFREMPAKNIITWNTMVKGFLQNQLYAE 227
Query: 146 --------------PDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
PD +T+ VLS C+H GS L G H + + N + + T L
Sbjct: 228 VLDLFDEMKTTNCLPDYLTVTGVLSACAHSGS--LKKGTEVHIYAIDNGLASSPHVTTAL 285
Query: 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE 251
+DMYAKCG ++ L VF + +++ W ALI G A G+ AL++F M+ +P++
Sbjct: 286 IDMYAKCGSIQQGLQVFYKSQVKDIYCWNALISGLALHGHGYAALNIFNKMRKNHTRPDD 345
Query: 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR 311
+TF G+L+AC H+GLV EG + F + +E+ + P+I+HYGCMVDL +A L+ A ++I+
Sbjct: 346 ITFIGLLSACSHSGLVQEGSQLFYSMQKEFGISPKIEHYGCMVDLLSRARHLDCALQLIK 405
Query: 312 TMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKW 371
TM +P I G+ L+AC H+ ++ ERV+K +DG + + +LY +W
Sbjct: 406 TMPFKPGEAILGALLSACIVHQDLEVGERVVKLVSSRGNYLSDGELM-MFSNLYASCGQW 464
Query: 372 EGAERVRKLMLNQNVRKARGSSVI 395
E A + R++M + + K G SV+
Sbjct: 465 EEANKWREMMNDTGIVKTAGFSVV 488
>gi|297812081|ref|XP_002873924.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319761|gb|EFH50183.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 939
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 128/363 (35%), Positives = 219/363 (60%), Gaps = 12/363 (3%)
Query: 37 HLHSHILKLGFISHVYVATSLLHEYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSG 95
LH I+K+GF + ++ +++H Y V++ A + F+ + + + N +I G+ K+G
Sbjct: 580 QLHGTIVKMGFDCYDFLQATIIHFYAVSNNLKLALQQFEVSVKDHIASRNALIAGFVKNG 639
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155
V +AR+ F++ +++ SW+AM++ Y + + L LFREMIS+ + PD +T+ +V
Sbjct: 640 MVEQAREVFDQTRDKDIFSWNAMMSGYAQSLSPQLALHLFREMISSSQVKPDAITMVSVF 699
Query: 156 SGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERN 215
S S LGS L GK AH ++ ++ N+ + +++MYAKCG ++ AL +F + +N
Sbjct: 700 SAISSLGS--LEEGKRAHEYLNRSSIPPNDNLIAAIINMYAKCGSIETALNIFH--QTKN 755
Query: 216 VIS-----WTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
+ S W A+ICGSA G+++ AL L+ +Q+ +KPN +TF GVL+AC H GLV+ G
Sbjct: 756 IFSSTISPWNAIICGSATHGHAKLALDLYSDLQSLPIKPNSITFVGVLSACCHAGLVELG 815
Query: 271 RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330
+ YF+ + ++ +EP I+HYGCMVDL GK+G LEEA E+I+ M ++ +V+IWG L+A +
Sbjct: 816 KTYFESMKSDHGIEPDIKHYGCMVDLLGKSGKLEEAKEMIKNMPVKADVMIWGMLLSASR 875
Query: 331 EHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKAR 390
H ++ + A + GG ++ ++Y +WE VR++M ++V +R
Sbjct: 876 IHG--NVEIAELAAAELAAIDPSHGGCKVMLSNVYADAGRWEDVALVREVMRTRDVEWSR 933
Query: 391 GSS 393
S
Sbjct: 934 AFS 936
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 98/373 (26%), Positives = 175/373 (46%), Gaps = 39/373 (10%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
M+LF +M + + ++ ++ +C+H + LHS +KL V+ +T+LL
Sbjct: 412 MELFREMRNLGIMLNEVTLATVISACSHLGGIWDCKMLHSLAIKLNLDDRVFASTNLLLM 471
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + S ARKLFDE+PERN VTWN M+ GYSK+G + +A++ F+++ +++ SW MI
Sbjct: 472 YCICSCLKDARKLFDEMPERNLVTWNVMLNGYSKAGLIEQAKELFDQITEKDIVSWGTMI 531
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
L D L + EM+ G+ P ++ + +LS + SVG G HG IVK
Sbjct: 532 DGCLRKNQLDEALVYYTEML-RRGMKPSEVMMVDLLSASAR--SVGSSKGLQLHGTIVKM 588
Query: 180 EWELNEQIATILVDMYAKCGFLKYALM-------------------------------VF 208
++ + + ++ YA LK AL VF
Sbjct: 589 GFDCYDFLQATIIHFYAVSNNLKLALQQFEVSVKDHIASRNALIAGFVKNGMVEQAREVF 648
Query: 209 ELMEERNVISWTALICGSAHRGYSEDALSLF-EMMQATGVKPNEMTFTGVLTACVHTGLV 267
+ ++++ SW A++ G A + AL LF EM+ ++ VKP+ +T V +A G +
Sbjct: 649 DQTRDKDIFSWNAMMSGYAQSLSPQLALHLFREMISSSQVKPDAITMVSVFSAISSLGSL 708
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR--LEPNVIIWGSF 325
+EG++ + ++ + P +++++ K G +E A + + + W +
Sbjct: 709 EEGKRAHEYLNRS-SIPPNDNLIAAIINMYAKCGSIETALNIFHQTKNIFSSTISPWNAI 767
Query: 326 LAACKEHKQFDMA 338
+ H +A
Sbjct: 768 ICGSATHGHAKLA 780
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 132/258 (51%), Gaps = 8/258 (3%)
Query: 18 SILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGF-ARKLFDEL 76
+++ L SC N++T +H +LK G S+ ++ S+L+ Y A +F
Sbjct: 297 ALVSALGSCASSNDVTCGRQIHGRVLKSGHDSNGFICNSVLNMYAKCRLLVDAESVFRAH 356
Query: 77 PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFR 136
+ ++ ++N M+ GY++S + +A F+ MP R+ S++ +I Y + ++LFR
Sbjct: 357 AKLDSASFNIMVDGYARSRRLGDALKLFDVMPERSCVSYTTLIKGYAQNNQWSEAMELFR 416
Query: 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA 196
EM N G+ +++T+ V+S CSHLG G+ K H +K + +T L+ MY
Sbjct: 417 EM-RNLGIMLNEVTLATVISACSHLG--GIWDCKMLHSLAIKLNLDDRVFASTNLLLMYC 473
Query: 197 KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTG 256
C LK A +F+ M ERN+++W ++ G + G E A LF+ + + +++
Sbjct: 474 ICSCLKDARKLFDEMPERNLVTWNVMLNGYSKAGLIEQAKELFDQITEKDI----VSWGT 529
Query: 257 VLTACVHTGLVDEGRKYF 274
++ C+ +DE Y+
Sbjct: 530 MIDGCLRKNQLDEALVYY 547
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 100/231 (43%), Gaps = 47/231 (20%)
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+L+ I+VD YA+ L AL +F++M ER+ +S+T LI G A +A+ LF
Sbjct: 358 KLDSASFNIMVDGYARSRRLGDALKLFDVMPERSCVSYTTLIKGYAQNNQWSEAMELFRE 417
Query: 242 MQATGVKPNEMTFTGVLTACVHTG-----------------------------------L 266
M+ G+ NE+T V++AC H G
Sbjct: 418 MRNLGIMLNEVTLATVISACSHLGGIWDCKMLHSLAIKLNLDDRVFASTNLLLMYCICSC 477
Query: 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
+ + RK F + E + + M++ + KAG +E+A E+ + E +++ WG+ +
Sbjct: 478 LKDARKLFDEMPER-----NLVTWNVMLNGYSKAGLIEQAKELFDQI-TEKDIVSWGTMI 531
Query: 327 AACKEHKQFDMAERVIKQALRM-VKPENDGGVFTLICDLYTMNEKWEGAER 376
C Q D A + LR +KP ++ DL + + + G+ +
Sbjct: 532 DGCLRKNQLDEALVYYTEMLRRGMKPSE-----VMMVDLLSASARSVGSSK 577
>gi|293333548|ref|NP_001170485.1| uncharacterized protein LOC100384484 [Zea mays]
gi|238005588|gb|ACR33829.1| unknown [Zea mays]
gi|413920755|gb|AFW60687.1| hypothetical protein ZEAMMB73_143396 [Zea mays]
Length = 569
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 126/312 (40%), Positives = 185/312 (59%), Gaps = 5/312 (1%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
N +I Y K G++ A+ FE MP R++ASW+ M+A Y +K FR M++ E +
Sbjct: 262 NALIAMYGKCGSIPMAQTLFEGMPARSLASWNTMVAMYEQHADVVEAIKFFRRMLT-EKV 320
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
D +T+ +VLS C+ G+ L GK H + + + +I +LVDMYAKCG + A
Sbjct: 321 GFDCVTLVSVLSACARSGA--LQTGKWVHELARNHGLDTDARIGNVLVDMYAKCGEIASA 378
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
VF+ + R+V+SW+A+I A+ G SE+AL LF +M+ GV+PN TFT VL AC H+
Sbjct: 379 RNVFDCLRMRSVVSWSAMISAYANHGASEEALKLFSLMKNEGVRPNSFTFTAVLVACGHS 438
Query: 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324
GLV+EG K+F I +Y + P ++HY CMVD+ G+AG L EAYE+IR M L P+ +WG+
Sbjct: 439 GLVEEGLKHFNSILSDYQMSPTLEHYACMVDMLGRAGRLIEAYEIIRGMSLCPDKCVWGA 498
Query: 325 FLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384
FLA CK H ++AE V + + ND + L+ ++Y + AER+R M
Sbjct: 499 FLAGCKLHGNLELAEFVARDLFQ--SGSNDVTFYVLMSNMYFEAGMLKDAERMRWAMKEM 556
Query: 385 NVRKARGSSVIS 396
+ K G S I+
Sbjct: 557 ELNKTAGRSAIN 568
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 145/334 (43%), Gaps = 37/334 (11%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+ +M V D ++ +L +C L + +H +++ +V ++L
Sbjct: 105 LALYKRMRAAGVAPDHYTYPIVLPACAAARELWLGRAVHGDVVRFALAGDGFVHSAL--- 161
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERM--PLRNVASWSAM 118
I Y + G V +A F R V SW++M
Sbjct: 162 ---------------------------ITMYFQEGEVADAELVFAESHGSSRTVVSWTSM 194
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
+A Y+ + + LF MI+ EG+ P+++T+ + L C G L G+ HGF+++
Sbjct: 195 VAGYVQNYYFGEAVALFGTMIA-EGVLPNEITLISFLP-CLQ-GQEWLDAGEMVHGFVIR 251
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
++ N +A L+ MY KCG + A +FE M R++ SW ++ +A+
Sbjct: 252 LGFDANIPLANALIAMYGKCGSIPMAQTLFEGMPARSLASWNTMVAMYEQHADVVEAIKF 311
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F M V + +T VL+AC +G + G K+ + + L+ + +VD++
Sbjct: 312 FRRMLTEKVGFDCVTLVSVLSACARSGALQTG-KWVHELARNHGLDTDARIGNVLVDMYA 370
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
K G + A V +R+ +V+ W + ++A H
Sbjct: 371 KCGEIASARNVFDCLRMR-SVVSWSAMISAYANH 403
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 74/321 (23%), Positives = 136/321 (42%), Gaps = 42/321 (13%)
Query: 31 NLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPERNAVTWNTMIKG 90
+L + +H+ + LG ++ ATSLL S +AR++FD
Sbjct: 33 SLRALLPIHARAIVLGVSANPAFATSLLAGVAPASLAYARRVFD---------------- 76
Query: 91 YSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAG---AYDPGLKLFREMISNEGLTPD 147
P+R+ W+ ++ A+ ++ A D L L++ M + G+ PD
Sbjct: 77 ---------------ATPVRDAYMWNTLLRAHSHSQLSHAADT-LALYKRMRA-AGVAPD 119
Query: 148 QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMV 207
T VL C+ + L +G++ HG +V+ + + + L+ MY + G + A +V
Sbjct: 120 HYTYPIVLPACA--AARELWLGRAVHGDVVRFALAGDGFVHSALITMYFQEGEVADAELV 177
Query: 208 FELM--EERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG 265
F R V+SWT+++ G Y +A++LF M A GV PNE+T L
Sbjct: 178 FAESHGSSRTVVSWTSMVAGYVQNYYFGEAVALFGTMIAEGVLPNEITLISFLPCLQGQE 237
Query: 266 LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSF 325
+D G + + I ++ ++GK G + A + M ++ W +
Sbjct: 238 WLDAGEMVHGFVI-RLGFDANIPLANALIAMYGKCGSIPMAQTLFEGMPAR-SLASWNTM 295
Query: 326 LAACKEHKQFDMAERVIKQAL 346
+A ++H A + ++ L
Sbjct: 296 VAMYEQHADVVEAIKFFRRML 316
>gi|30017569|gb|AAP12991.1| hypothetical protein [Oryza sativa Japonica Group]
gi|40539031|gb|AAR87288.1| putative PPR repeat containing protein [Oryza sativa Japonica
Group]
gi|108711017|gb|ABF98812.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 676
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 127/392 (32%), Positives = 223/392 (56%), Gaps = 8/392 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILK-LGFISH-VYVATSLL 58
++ F M + + D ++ + +L C + +H +++ +G + ++ +LL
Sbjct: 214 LRFFRGMASRGIGVDQYTAVALLACCGRLKKAVLGRSVHGVVVRRIGVADRGLILSNALL 273
Query: 59 HEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
Y A ++FDE ER+ ++WNTM+ G++ +G + A +F P R++ SW+A
Sbjct: 274 DMYAKCGEMNTAMRVFDEAGERDGISWNTMVAGFANAGLLDLASKYFGEAPARDIISWNA 333
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
++A Y + + LF +M+++ + PD++T ++S + G+ L +S HG++V
Sbjct: 334 LLAGYARYEEFSATMILFHDMLASS-VIPDKVTAVTLISAVAGKGT--LNSARSVHGWVV 390
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
K + +A+ LVDMY KCG +K A VFE +++V WTA+I G A G+ + AL
Sbjct: 391 KEHGTQDSFLASALVDMYCKCGSIKLAYAVFEKAVDKDVTLWTAMISGLAFHGHGDVALD 450
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
LF MQA G +PN +T VL+AC H GL DEG K F + + +++EP ++H+GCMVDL
Sbjct: 451 LFWKMQAEGTEPNGVTLVAVLSACSHAGLFDEGCKIFDTLKQRFNIEPGVEHFGCMVDLL 510
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
++G L +A ++ R M ++P+ IWGS L+A + ++AE K+ L ++P +GG
Sbjct: 511 ARSGRLSDAVDLARRMPMKPSRSIWGSILSASSACQNTEVAEIASKELL-CLEPAEEGG- 568
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKA 389
+ L+ ++Y +W + VR+ M + VRK+
Sbjct: 569 YVLLSNMYAAEGQWNYSNEVRENMERKGVRKS 600
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 92/370 (24%), Positives = 157/370 (42%), Gaps = 71/370 (19%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ M S+ D + L +LKS +V +H+H++ G S VY+ SL+ Y+
Sbjct: 116 LYMSMLASSIHPDEQTFLSLLKS-VDAERRSVGKQVHAHVVVTGLHSRVYLRNSLIKMYL 174
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
A +F P +AV+ N M+ GY K G C +
Sbjct: 175 DAGDVEAAEAMFRCAPTADAVSCNIMLSGYVKGG--CSGK-------------------- 212
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
L+ FR M S G+ DQ T A+L+ C L ++G+S HG +V+
Sbjct: 213 ---------ALRFFRGMAS-RGIGVDQYTAVALLACCGRLKKA--VLGRSVHGVVVRRIG 260
Query: 182 ELNEQ--IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGY-------- 231
+ ++ L+DMYAKCG + A+ VF+ ER+ ISW ++ G A+ G
Sbjct: 261 VADRGLILSNALLDMYAKCGEMNTAMRVFDEAGERDGISWNTMVAGFANAGLLDLASKYF 320
Query: 232 ----SEDALS-------------------LFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
+ D +S LF M A+ V P+++T +++A G ++
Sbjct: 321 GEAPARDIISWNALLAGYARYEEFSATMILFHDMLASSVIPDKVTAVTLISAVAGKGTLN 380
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
R + +E+ + +VD++ K G ++ AY V ++ +V +W + ++
Sbjct: 381 SARSVHGWVVKEHGTQDSFL-ASALVDMYCKCGSIKLAYAVFEKA-VDKDVTLWTAMISG 438
Query: 329 CKEHKQFDMA 338
H D+A
Sbjct: 439 LAFHGHGDVA 448
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 68/179 (37%), Gaps = 2/179 (1%)
Query: 168 MGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSA 227
+GK H +V + L+ MY G ++ A +F + +S ++ G
Sbjct: 146 VGKQVHAHVVVTGLHSRVYLRNSLIKMYLDAGDVEAAEAMFRCAPTADAVSCNIMLSGYV 205
Query: 228 HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR- 286
G S AL F M + G+ ++ T +L C GR ++ + R
Sbjct: 206 KGGCSGKALRFFRGMASRGIGVDQYTAVALLACCGRLKKAVLGRSVHGVVVRRIGVADRG 265
Query: 287 IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQA 345
+ ++D++ K G + A V E + I W + +A D+A + +A
Sbjct: 266 LILSNALLDMYAKCGEMNTAMRVFDEAG-ERDGISWNTMVAGFANAGLLDLASKYFGEA 323
>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
Length = 746
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 122/324 (37%), Positives = 189/324 (58%), Gaps = 7/324 (2%)
Query: 80 NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI 139
+ + N M+ Y+K + A+ F+ +P R+V SW+ +I Y+ G + ++++ +M
Sbjct: 304 DIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMH 363
Query: 140 SNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG 199
++EGL P Q T +VL S+LG GL G H +K L+ + T L+D+YAKCG
Sbjct: 364 NHEGLKPIQGTFVSVLPAYSYLG--GLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCG 421
Query: 200 FLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLT 259
L A+ +FE M R+ W A+I G G+ ALSLF MQ +KP+ +TF +L
Sbjct: 422 KLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLA 481
Query: 260 ACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNV 319
AC H GLVD+GR +F ++ Y + P +HY CMVD+ G+AG L+EA+E I++M ++P+
Sbjct: 482 ACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDS 541
Query: 320 IIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRK 379
+WG+ L AC+ H +M +V Q L + PEN G + L+ ++Y KW+G + VR
Sbjct: 542 AVWGALLGACRIHGNVEMG-KVASQNLFELDPENV-GYYVLMSNMYAKIGKWDGVDAVRS 599
Query: 380 LMLNQNVRKARGSS---VISSLSV 400
L+ QN++K G S V S+SV
Sbjct: 600 LVRRQNLQKTPGWSSMEVKGSVSV 623
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 137/312 (43%), Gaps = 47/312 (15%)
Query: 37 HLHSHILKLGFI-SHVYVATSLLHEYVVTSFGF---ARKLFDELPERNAVTWNTMIKGYS 92
LH+ L+LG + +V+ + SL+H Y+ FG A ++FDE+PER+ WN M+ G
Sbjct: 87 QLHACALRLGLLHPNVFASGSLVHAYL--RFGRVAEAYRVFDEMPERDVPAWNAMLSGLC 144
Query: 93 KSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIG 152
++ +A RM EG+ D +T+
Sbjct: 145 RNTRAADAVTLLGRM--------------------------------VGEGVAGDAVTLS 172
Query: 153 AVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME 212
+VL C LG L + H + VK+ + L+D+Y K G L A VF M
Sbjct: 173 SVLPMCVVLGDRALAL--VMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMA 230
Query: 213 ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE-GR 271
R++++W ++I + G A+ LF M +GV P+ +T + +A G DE G
Sbjct: 231 LRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCG--DELGA 288
Query: 272 K--YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAAC 329
K + + +D+ I MVD++ K ++ A +V + + +V+ W + +
Sbjct: 289 KSVHCYVRRRGWDVGDIIAG-NAMVDMYAKMSKIDAAQKVFDNLP-DRDVVSWNTLITGY 346
Query: 330 KEHKQFDMAERV 341
++ + A R+
Sbjct: 347 MQNGLANEAIRI 358
>gi|147859488|emb|CAN83542.1| hypothetical protein VITISV_021357 [Vitis vinifera]
Length = 795
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 132/396 (33%), Positives = 221/396 (55%), Gaps = 10/396 (2%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
FS+M ++ + FS ++ S T +L LH+ +K+G S+V+V ++++ Y
Sbjct: 355 FFSRMLALNIKPNQFSFGTVIPSATALQDLNSGRQLHACAIKMGLESNVFVGSAVVDFYA 414
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
+TS A+K F++ E N V++ T+I+GY K +A F MP RNV SW+AMI+
Sbjct: 415 KLTSINEAQKAFEDTHEPNVVSYTTLIRGYLKKERFDDALALFRXMPERNVVSWNAMISG 474
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y G + + LF M+ EG P++ T +S +++ ++G MG+S HG VK
Sbjct: 475 YSQMGYNEEAVNLFVVML-REGXLPNERTFPCAISAVANIAALG--MGRSFHGSAVKFLG 531
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+ + I LV YAKCG ++ +L+VF + ++N++SW ALICG A+ G +A+ FE
Sbjct: 532 KFDVFIGNSLVSFYAKCGSMEESLLVFNTLPKKNIVSWNALICGYANHGRGMEAIYFFEK 591
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKM--IDEEYDLEPRIQHYGCMVDLFGK 299
MQ TG++PN +T G+L AC H+GLVD+G YF ++E L P +H+ CMVDL +
Sbjct: 592 MQDTGLRPNSVTLLGLLLACNHSGLVDKGYSYFNKARVEEPGLLTP--EHHACMVDLLSR 649
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
+G +EA + + + P + W + L C+ H ++ E ++ L + PE D +
Sbjct: 650 SGRFKEAEKFLHELPFVPGIGFWKALLGGCRIHSNMELGELAARKILAL-DPE-DVSSYV 707
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++ + ++ +W+ +RK M + ++ GSS I
Sbjct: 708 MLSNAHSAAGRWQSVSMIRKEMREKRMKGVPGSSWI 743
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 89/369 (24%), Positives = 146/369 (39%), Gaps = 82/369 (22%)
Query: 7 MHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISH---VYVATSLLHEYVV 63
++R SD L S F L + LK +H V + T++L +V
Sbjct: 250 LNRGCPSSDGTDAYKTLHSLAKFKPQRETQALACNQLKESQRAHGRAVKLGTTILEPDIV 309
Query: 64 TSFGFAR------KLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
S+ ++ KLFDE+P + V+ I +++ + EA FF RM N+
Sbjct: 310 CSYSASKELWDACKLFDEVPNWDVVSATATIGCFARYHHHEEAIYFFSRMLALNI----- 364
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
P+Q + G V+ + L L G+ H +
Sbjct: 365 ---------------------------KPNQFSFGTVIPSATALQD--LNSGRQLHACAI 395
Query: 178 KNEWELNEQIATILVDMYAKC--------------------------GFLKY-----ALM 206
K E N + + +VD YAK G+LK AL
Sbjct: 396 KMGLESNVFVGSAVVDFYAKLTSINEAQKAFEDTHEPNVVSYTTLIRGYLKKERFDDALA 455
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
+F M ERNV+SW A+I G + GY+E+A++LF +M G PNE TF ++A +
Sbjct: 456 LFRXMPERNVVSWNAMISGYSQMGYNEEAVNLFVVMLREGXLPNERTFPCAISAVANIAA 515
Query: 267 VDEGRKYFKMIDE---EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWG 323
+ GR + + ++D + +V + K G +EE+ V T+ + N++ W
Sbjct: 516 LGMGRSFHGSAVKFLGKFD----VFIGNSLVSFYAKCGSMEESLLVFNTLP-KKNIVSWN 570
Query: 324 SFLAACKEH 332
+ + H
Sbjct: 571 ALICGYANH 579
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 15/174 (8%)
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGF-----LKYALMVFELMEERNVISWTALIC 224
+ AHG VK + T +++ C + L A +F+ + +V+S TA I
Sbjct: 290 QRAHGRAVK--------LGTTILEPDIVCSYSASKELWDACKLFDEVPNWDVVSATATIG 341
Query: 225 GSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLE 284
A + E+A+ F M A +KPN+ +F V+ + ++ GR+ + LE
Sbjct: 342 CFARYHHHEEAIYFFSRMLALNIKPNQFSFGTVIPSATALQDLNSGRQ-LHACAIKMGLE 400
Query: 285 PRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
+ +VD + K + EA + EPNV+ + + + + ++FD A
Sbjct: 401 SNVFVGSAVVDFYAKLTSINEAQKAFEDTH-EPNVVSYTTLIRGYLKKERFDDA 453
>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g68930-like [Cucumis
sativus]
Length = 695
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 137/431 (31%), Positives = 220/431 (51%), Gaps = 41/431 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF +M R+ ++I+ IL + +L +H I+ F+ +V++ +L
Sbjct: 140 LELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDM 199
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGN----------------------- 96
Y AR LFD L ++N V+WN MI GY+K+G
Sbjct: 200 YAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTM 259
Query: 97 ------------VCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
V EAR F +++ W+AM+ Y G + L LF EM+ E +
Sbjct: 260 STIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLL-EHI 318
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
PD T+ +V+S C+ L S L G++ HG + N +++ L+DMY+KCGF+ A
Sbjct: 319 EPDSYTLSSVVSSCAKLAS--LHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDA 376
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
VF LM RNV+SW A+I G A G+ +DAL LFE M KP+ +TF G+L+AC+H
Sbjct: 377 RSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHC 436
Query: 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324
+++G++YF I ++ + P + HY CMV+L G+ G +E+A +I+ M +P+ +IW +
Sbjct: 437 NWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWST 496
Query: 325 FLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384
L+ C AE V + L + P + ++ ++Y +W+ VR LM ++
Sbjct: 497 LLSICSTKGDIVNAE-VAARHLFELDP-TIAVPYIMLSNMYASMGRWKDVASVRNLMKSK 554
Query: 385 NVRKARGSSVI 395
NV+K G S I
Sbjct: 555 NVKKFAGFSWI 565
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 106/385 (27%), Positives = 188/385 (48%), Gaps = 20/385 (5%)
Query: 9 RQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGF-ISHVYVATSLLHEYVVTSFG 67
R + S++++ ++ C N + L SH+ F + ++ LLH Y FG
Sbjct: 17 RSTATSEAYT--QLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYA--KFG 72
Query: 68 F---ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLN 124
A+ LFD++ +R+ +WN ++ Y+KSG++ + F+RMP R+ S++ IA +
Sbjct: 73 KLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSG 132
Query: 125 AGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN 184
L+LF+ M EG P + TI ++L+ + L + L GK HG I+ + N
Sbjct: 133 NSCPQESLELFKRM-QREGFEPTEYTIVSILNASAQL--LDLRYGKQIHGSIIVRNFLGN 189
Query: 185 EQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQA 244
I L DMYAKCG ++ A +F+ + ++N++SW +I G A G E + L M+
Sbjct: 190 VFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRL 249
Query: 245 TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLE 304
+G P+++T + ++ A G VDE R+ F E+ I + M+ + K G E
Sbjct: 250 SGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEK-----DIVCWTAMMVGYAKNGREE 304
Query: 305 EAYEVIRTMRL---EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
+A + M L EP+ S +++C + + V +++ + N+ V + +
Sbjct: 305 DALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSI-LAGLNNNLLVSSAL 363
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNV 386
D+Y+ + A V LM +NV
Sbjct: 364 IDMYSKCGFIDDARSVFNLMPTRNV 388
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 122/274 (44%), Gaps = 46/274 (16%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF++M + + DS+++ ++ SC +L +H + G +++ V+++L+ Y
Sbjct: 309 LFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYS 368
Query: 63 VTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR----NVASWSA 117
F AR +F+ +P RN V+WN MI G +++G+ +A + FE M + + ++
Sbjct: 369 KCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIG 428
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVG------------ 165
+++A L+ + G + F + + G+TP T+ + LG G
Sbjct: 429 ILSACLHCNWIEQGQEYFDSISNQHGMTP---TLDHYACMVNLLGRTGRIEQAVALIKNM 485
Query: 166 -----------LLMGKSAHGFIVKNE------WELNEQIAT---ILVDMYAKCGFLKYAL 205
LL S G IV E +EL+ IA +L +MYA G K
Sbjct: 486 AHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVA 545
Query: 206 MVFELMEERNV-----ISWTALICGSAHRGYSED 234
V LM+ +NV SW I HR SED
Sbjct: 546 SVRNLMKSKNVKKFAGFSWIE-IDNEVHRFTSED 578
>gi|345505224|gb|AEN99836.1| chlororespiratory reduction 4, partial [Lepidium virginicum]
Length = 594
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 116/327 (35%), Positives = 197/327 (60%), Gaps = 4/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A+ L+D +P R+ +TW TMI GY K G V +A+ + +P R+V ++++M+A Y+ +
Sbjct: 252 AKDLYDVMPRRDVITWATMIDGYVKLGFVHQAKTLLDXIPHRDVVAYNSMMAGYVQNKYH 311
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L+LF +M L+PD+ T+ VLS + LG L + ++VK ++ L ++
Sbjct: 312 MEALELFGDMEKESHLSPDETTLVIVLSAIAQLGR--LSKAVDMYLYVVKKQFFLGGKLW 369
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+DMY+KCG +++A++VFE +E + + W A+I G A G A ++ ++ + +K
Sbjct: 370 VSLIDMYSKCGSIQHAMLVFEGLENKTIDHWNAIIGGLAIHGRGGPAFNMLLQIERSSIK 429
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+++TFTGVL AC H+G V EG F+++ ++ +EPR+QHYGCMVD+ ++G +E A
Sbjct: 430 PDDITFTGVLNACSHSGFVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKN 489
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+I M +EPN +IW +FL AC HK+F+M E V K + ++ + + + L+ ++Y
Sbjct: 490 LIEKMPIEPNDVIWRTFLTACSHHKEFEMGELVAKHLI--LQADYNPSSYVLLSNMYASF 547
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
W+ VR +M + + K G S I
Sbjct: 548 GMWKDVRGVRTMMKERKIPKIPGCSSI 574
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/328 (21%), Positives = 131/328 (39%), Gaps = 56/328 (17%)
Query: 35 IHHLHSHILKLGFISHVYVATSLLHEYVVTSFG----FARKLFDELPERNAVTWNTMIKG 90
++ +H+ ++ GFI + + T ++ + + FAR +F+E
Sbjct: 9 VNKIHAQLITTGFIKNTNLTTRIVLAFASSRHQHLAEFARCVFEE--------------H 54
Query: 91 YSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMT 150
Y S E D F W+A++ ++ + L LF M+ N G++ D+ +
Sbjct: 55 YVYSFPYGETEDPF---------LWNAVMKSHSHGTDPRRALLLFCLMLEN-GVSVDKFS 104
Query: 151 IGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFEL 210
VL CS LG V G HGF+ K + + L+ +Y KCG L +A +F+
Sbjct: 105 SSLVLKACSRLGFVK--GGMQIHGFLRKTGLWSDLFLQNCLIALYLKCGCLGFARQIFDR 162
Query: 211 MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
M +R+ +S+ G G E A LF + A GL
Sbjct: 163 MPKRDSVSYNPXXEGXVKCGLIESARELFXLXXXEXKNXXSXXCMXSGYAQTSDGLXIAS 222
Query: 271 RKYFKMIDEE-----------------------YDLEPR--IQHYGCMVDLFGKAGFLEE 305
+ + +M +++ YD+ PR + + M+D + K GF+ +
Sbjct: 223 KLFSEMPEKDLISWNSIIDGYVKHGRXEDAKDLYDVMPRRDVITWATMIDGYVKLGFVHQ 282
Query: 306 AYEVIRTMRLEPNVIIWGSFLAACKEHK 333
A ++ + +V+ + S +A ++K
Sbjct: 283 AKTLLDXIP-HRDVVAYNSMMAGYVQNK 309
>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
Length = 673
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 118/319 (36%), Positives = 196/319 (61%), Gaps = 8/319 (2%)
Query: 78 ERNAVTWNTMIKGYSKSG--NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF 135
ERNA NTM+ Y+K G ++ AR F+ M R+V SW++MIA Y G + L+
Sbjct: 229 ERNAGVVNTMLDSYAKGGSRDLEVARKVFDTME-RDVVSWNSMIALYAQNGMSAEAIGLY 287
Query: 136 REMIS-NEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDM 194
+M++ G+ + + + AVL C+H G++ GK H +V+ E N + T +VDM
Sbjct: 288 SKMLNVGGGIKCNAVALSAVLLACAHAGAIQ--TGKRIHNQVVRMGLEENVYVGTSIVDM 345
Query: 195 YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTF 254
Y+KCG ++ A F ++E+N++SW+A+I G G ++AL +F M+ +G++PN +TF
Sbjct: 346 YSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITF 405
Query: 255 TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR 314
VL AC H GL+DEGR ++ + +E+ +E ++HYGCMVDL G+AG L+EAY +I+ M+
Sbjct: 406 ISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMK 465
Query: 315 LEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGA 374
++P+ IWG+ L+AC+ HK ++AE +K+ + ++ G + L+ ++Y W+
Sbjct: 466 VKPDAAIWGALLSACRIHKNVELAEMSVKRLFEL--DASNSGYYVLLSNIYAEARMWKDV 523
Query: 375 ERVRKLMLNQNVRKARGSS 393
ER+R L+ + + K G S
Sbjct: 524 ERIRLLVKTRRIEKPPGYS 542
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 95/214 (44%), Gaps = 41/214 (19%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLF 73
++ ++ +L +C H + +H+ ++++G +VYV TS++ Y A + F
Sbjct: 300 NAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAF 359
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
++ E+N ++W+ MI GY G EA L+
Sbjct: 360 RKIKEKNILSWSAMITGYGMHGRGQEA-------------------------------LE 388
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF-IVKNEWELNEQIA--TI 190
+F EM GL P+ +T +VL+ CSH G L+ + + + +K E+ + +
Sbjct: 389 IFTEM-KRSGLRPNYITFISVLAACSHAG----LLDEGRYWYNAMKQEFGIEAGVEHYGC 443
Query: 191 LVDMYAKCGFLKYAL-MVFELMEERNVISWTALI 223
+VD+ + G L A ++ E+ + + W AL+
Sbjct: 444 MVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALL 477
>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 126/444 (28%), Positives = 233/444 (52%), Gaps = 53/444 (11%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ ++ QM + D +I+ +L C + L++ +HS +K F + + +LL
Sbjct: 236 LGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDM 295
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSK-------------------------- 93
Y A ++F+++ ERN V+W +MI GY++
Sbjct: 296 YSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAI 355
Query: 94 ---------SGNVCEARDFFERMPLRNVAS----WSAMIAAYLNAGAYDPGLKLFREMIS 140
SG++ +D + + N+ S +A++ Y G+ + +F M+
Sbjct: 356 TSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVV 415
Query: 141 NE---------GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
+ L PD T+ VL C+ L + L GK HG+I++N + + +A L
Sbjct: 416 KDIISWNTMIGELKPDSRTMACVLPACASLSA--LERGKEIHGYILRNGYSSDRHVANAL 473
Query: 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE 251
VD+Y KCG L A ++F+++ ++++SWT +I G GY +A++ F M+ G++P+E
Sbjct: 474 VDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDE 533
Query: 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR 311
++F +L AC H+GL+++G ++F ++ ++++EP+++HY CMVDL + G L +AYE I
Sbjct: 534 VSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIE 593
Query: 312 TMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKW 371
T+ + P+ IWG+ L C+ + ++AE+V ++ + +PEN G + L+ ++Y EKW
Sbjct: 594 TLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFEL-EPEN-SGYYVLLANIYAEAEKW 651
Query: 372 EGAERVRKLMLNQNVRKARGSSVI 395
E +R+R+ + Q +RK G S I
Sbjct: 652 EEVKRLREKIGKQGLRKNPGCSWI 675
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 101/351 (28%), Positives = 178/351 (50%), Gaps = 28/351 (7%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
M+L + + + ++S +L+ C + T +HS I + L+
Sbjct: 86 MELICMCKKSELETKTYS--SVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSF 143
Query: 61 YVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGN----VC----------------E 99
Y R++FD + ++N WN M+ Y+K G+ +C
Sbjct: 144 YATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPES 203
Query: 100 ARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCS 159
A + F+++ R+V SW++MI+ Y++ G + GL ++++M+ G+ D TI +VL GC+
Sbjct: 204 AFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMY-LGIDVDLATIISVLVGCA 262
Query: 160 HLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISW 219
+ G++ L GK+ H +K+ +E + L+DMY+KCG L AL VFE M ERNV+SW
Sbjct: 263 NSGTLSL--GKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSW 320
Query: 220 TALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE 279
T++I G G S+ A+ L + M+ GVK + + T +L AC +G +D G+ I
Sbjct: 321 TSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKA 380
Query: 280 EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330
++E + ++D++ K G +E A V TM ++ ++I W + + K
Sbjct: 381 N-NMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVK-DIISWNTMIGELK 429
>gi|115436706|ref|NP_001043111.1| Os01g0390600 [Oryza sativa Japonica Group]
gi|21328171|dbj|BAC00748.1| pentatricopeptide (PPR) repeat-containing-like protein [Oryza
sativa Japonica Group]
gi|113532642|dbj|BAF05025.1| Os01g0390600 [Oryza sativa Japonica Group]
Length = 657
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 124/384 (32%), Positives = 224/384 (58%), Gaps = 9/384 (2%)
Query: 19 ILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSF-GFARKLFDELP 77
++ ++K+C+ + ++ LH+ ILK GF +H +V +L+H Y F A+ F
Sbjct: 279 LVGLVKACSRHSAVSEGQQLHTVILKNGFDAHAFVQATLIHYYGSCDFIDHAQMQFKLSD 338
Query: 78 ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
+ + +WN ++ + V EAR F+ MP R+ SWS +I+ Y+ +G + L++F
Sbjct: 339 KSHVASWNALMASLLRRNLVHEARQLFDDMPERDTISWSTLISGYVQSGNSNMALQIFCS 398
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
M+ + G+ P+++T+ + LS ++ G++G + H +I+ +L ++++ L+++YAK
Sbjct: 399 ML-DAGVEPNEITLASALSAVANSGTLG--QARWIHDYIISRSIQLTDKLSAGLINVYAK 455
Query: 198 CGFLKYALMVFELMEERN--VISWTALICGSAHRGYSEDALSLFEMMQATG-VKPNEMTF 254
CG + A+ +F +++++ V W ++IC A GY +L LF +Q+T +KPN +T+
Sbjct: 456 CGSIAEAVQLFNHVKDKSISVSPWNSIICNLAIHGYVNMSLELFSQLQSTTHIKPNSITY 515
Query: 255 TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR 314
GVL AC H G+V EG++ F+ + ++Y ++P I+HYGCMVDL +AG+LEEA +I+TM
Sbjct: 516 LGVLNACCHAGMVAEGKRQFESMRQQYGIQPEIKHYGCMVDLLCRAGYLEEAELLIKTMP 575
Query: 315 LEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGA 374
++ +V+ WG LAA + + E+ ++ L + P + G + +LY W
Sbjct: 576 MKADVVAWGCILAAARTQGNVALGEKAAEE-LSKLDPSH-GASKIALSNLYADAGHWSNV 633
Query: 375 ERVRKLMLNQNVRKARGSSVISSL 398
VRK + N+N+ + GSS I L
Sbjct: 634 SVVRKELQNENLERLTGSSGILQL 657
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 105/419 (25%), Positives = 188/419 (44%), Gaps = 45/419 (10%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKS--CTHFNNLTVIHHLHSHILKLGFISHVYVATSLL 58
+ +F M ++V + ++ +L + C H + H ++ G V VAT+L+
Sbjct: 127 LAVFRDMLTEAVQPNEVTLAEVLTAMACDH-GAPAPVGAAHGVAVRRGLDGFVIVATNLV 185
Query: 59 HEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
H Y V+ AR +F+ +P+RN VTWNTM+ Y K+G + A + F +P R+ SW
Sbjct: 186 HAYGAVSQVPSARSIFELMPDRNTVTWNTMLNCYVKAGMINMAAEVFGVIPERDEVSWLT 245
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MI Y+ A L+ + M+ G+ +++ + ++ CS +V G+ H I+
Sbjct: 246 MIDGYMCADFLLQALRTYVAMVGTVGIRANEVILVGLVKACSRHSAVS--EGQQLHTVIL 303
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFEL--------------------------- 210
KN ++ + + L+ Y C F+ +A M F+L
Sbjct: 304 KNGFDAHAFVQATLIHYYGSCDFIDHAQMQFKLSDKSHVASWNALMASLLRRNLVHEARQ 363
Query: 211 ----MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
M ER+ ISW+ LI G G S AL +F M GV+PNE+T L+A ++G
Sbjct: 364 LFDDMPERDTISWSTLISGYVQSGNSNMALQIFCSMLDAGVEPNEITLASALSAVANSGT 423
Query: 267 VDEGR-KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEP-NVIIWGS 324
+ + R + +I L ++ +++++ K G + EA ++ ++ + +V W S
Sbjct: 424 LGQARWIHDYIISRSIQLTDKLS--AGLINVYAKCGSIAEAVQLFNHVKDKSISVSPWNS 481
Query: 325 FLAACKEHKQFDMAERVIK--QALRMVKPENDG--GVFTLICDLYTMNEKWEGAERVRK 379
+ H +M+ + Q+ +KP + GV C + E E +R+
Sbjct: 482 IICNLAIHGYVNMSLELFSQLQSTTHIKPNSITYLGVLNACCHAGMVAEGKRQFESMRQ 540
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 163/347 (46%), Gaps = 47/347 (13%)
Query: 37 HLHSHILKLGFI-SHVYVATSLLHEYVVTSFGFARKLFDELPE--RNAVTWNTMIKGYSK 93
LH+ K G + S+++V SLL Y + A LFDE+P R+A N ++ ++
Sbjct: 29 QLHALAAKSGLLTSNLFVRNSLLAFYSRVAPSLAYHLFDEIPPLLRDATAHNILLSALAR 88
Query: 94 SGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGA 153
+G + A+ MP R+ S++ +I+A +G + L +FR+M++ E + P+++T+
Sbjct: 89 AGRLERAQCLLAEMPQRDAVSFTTVISALSRSGHPERALAVFRDMLT-EAVQPNEVTLAE 147
Query: 154 VLS--GCSH-----LGSV-GLLMGKSAHGFIV------------------KNEWELNEQI 187
VL+ C H +G+ G+ + + GF++ ++ +EL
Sbjct: 148 VLTAMACDHGAPAPVGAAHGVAVRRGLDGFVIVATNLVHAYGAVSQVPSARSIFELMPDR 207
Query: 188 ATI----LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQ 243
T+ +++ Y K G + A VF ++ ER+ +SW +I G + AL + M
Sbjct: 208 NTVTWNTMLNCYVKAGMINMAAEVFGVIPERDEVSWLTMIDGYMCADFLLQALRTYVAMV 267
Query: 244 AT-GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI-DEEYDLEPRIQHYGCMVDLFGKAG 301
T G++ NE+ G++ AC V EG++ +I +D +Q ++ +G
Sbjct: 268 GTVGIRANEVILVGLVKACSRHSAVSEGQQLHTVILKNGFDAHAFVQ--ATLIHYYGSCD 325
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAA------CKEHKQF--DMAER 340
F++ A + + + +V W + +A+ E +Q DM ER
Sbjct: 326 FIDHAQMQFK-LSDKSHVASWNALMASLLRRNLVHEARQLFDDMPER 371
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 10/178 (5%)
Query: 190 ILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP 249
IL+ A+ G L+ A + M +R+ +S+T +I + G+ E AL++F M V+P
Sbjct: 81 ILLSALARAGRLERAQCLLAEMPQRDAVSFTTVISALSRSGHPERALAVFRDMLTEAVQP 140
Query: 250 NEMTFTGVLT--ACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
NE+T VLT AC H G + + L+ + +V +G + A
Sbjct: 141 NEVTLAEVLTAMACDHGAPAPVGAAHGVAV--RRGLDGFVIVATNLVHAYGAVSQVPSAR 198
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365
+ M + N + W + L + +MA V V PE D + + D Y
Sbjct: 199 SIFELMP-DRNTVTWNTMLNCYVKAGMINMAAEVFG-----VIPERDEVSWLTMIDGY 250
>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
gi|223948835|gb|ACN28501.1| unknown [Zea mays]
Length = 599
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 134/399 (33%), Positives = 217/399 (54%), Gaps = 42/399 (10%)
Query: 1 MQLFSQMHRQSVP-SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+ ++ +M R P +SF++ LK+C LH+ L+ G + YV T LL+
Sbjct: 110 LAVYRRMLRAGSPRPNSFTLAFALKACAAVPAPGEGRQLHAQALRQGLATSAYVQTGLLN 169
Query: 60 EYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y AR +FD + +G+ +N+ +WSAM
Sbjct: 170 LYAKCEQVALARTVFDGM-----------------AGD-------------KNLVAWSAM 199
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
++ Y G + L LFREM G+ PD++T+ +V+S C+ G++ L GK H +I +
Sbjct: 200 VSGYSRVGMVNEALGLFREM-QAVGVEPDEVTMVSVISACAKAGALDL--GKWVHAYIDR 256
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
++ +++T L+DMYAKCG ++ A VF+ M E++ +W+A+I G A G EDAL L
Sbjct: 257 KGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGL 316
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F M V+PN +TF GVL+AC H+GLV++GR+Y+ ++ + ++P +++YGCMVDL
Sbjct: 317 FSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIM-QNLGIKPSMENYGCMVDLLC 375
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMV--KPENDGG 356
++G L++AY + M + PN +IW + L ACK + D+AE K+ L + PEN
Sbjct: 376 RSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNPEN--- 432
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ +LY N +W+ +R+ M +NV G S I
Sbjct: 433 -YVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSI 470
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/369 (23%), Positives = 160/369 (43%), Gaps = 56/369 (15%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHI--LKLGFISHVYVATSLL 58
MQL ++P ++ HI+ L + H+H+ L+L ++ + + LL
Sbjct: 1 MQLLKPKEAATLPREALEA-HIVSLVRRCPGLLALRSAHAHLTRLRLPRLTAAFALSKLL 59
Query: 59 HEYVVTSFGFA---------RKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL 109
V A R LFD++P+ A +N++I+ +G+
Sbjct: 60 ASCVSAPAPAAAQAAASSYARNLFDQIPDPTAFCYNSLIRALPAAGSA------------ 107
Query: 110 RNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMG 169
P L ++R M+ P+ T+ L C+ + + G G
Sbjct: 108 --------------------PALAVYRRMLRAGSPRPNSFTLAFALKACAAVPAPG--EG 145
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAH 228
+ H ++ + + T L+++YAKC + A VF+ M ++N+++W+A++ G +
Sbjct: 146 RQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGYSR 205
Query: 229 RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE---YDLEP 285
G +AL LF MQA GV+P+E+T V++AC G +D G+ ID + DLE
Sbjct: 206 VGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLEL 265
Query: 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQA 345
++D++ K G +E A V M +E + W + + H + A + +
Sbjct: 266 STA----LIDMYAKCGLIERARGVFDAM-VEKDTKAWSAMIVGFAIHGLVEDALGLFSRM 320
Query: 346 LRM-VKPEN 353
L + V+P N
Sbjct: 321 LELKVRPNN 329
>gi|449523934|ref|XP_004168978.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Cucumis sativus]
Length = 664
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 122/330 (36%), Positives = 201/330 (60%), Gaps = 7/330 (2%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A LF +PE + ++WN MI G+S+ G++ A D F+R+P +++ SW++MI+ Y Y
Sbjct: 339 ASNLFSRMPEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDY 398
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ +F +M EG PD+ T+ ++LS C+ G V L++G H + K + + I
Sbjct: 399 KGAMNIFLQM-QLEGKKPDRHTLSSILSACA--GLVDLVLGTQIHQLVTK-AFIADLPIN 454
Query: 189 TILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
LV MY++CG + A MVF+ M +R+VISW A+I G A+ G++ +AL LF++M+ V
Sbjct: 455 NSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNV 514
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
+P+ +TF VL AC H GL++EGR+ F + + ++P+++HY +VD+ G+ G LEEA
Sbjct: 515 QPSYITFISVLNACAHAGLIEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAM 574
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM 367
+I +M EP+ +WG+ L ACK H +MA R +AL ++PE+ + L+ ++Y
Sbjct: 575 SLINSMPCEPDKAVWGALLGACKVHNNVEMA-RAAAEALMKLQPES-SAPYVLLHNMYAD 632
Query: 368 NEKWEGAERVRKLMLNQNVRKARGSSVISS 397
+W+ A +R +M NV+K G S + S
Sbjct: 633 VGRWDDAAEMRTMMEKNNVQKDAGYSRVDS 662
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 135/295 (45%), Gaps = 29/295 (9%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR +FD++PE + V+WNTM+ GY+KSG + +A + F MP RNV SW+AM++ YL G
Sbjct: 140 ARNMFDQMPETDCVSWNTMLSGYAKSGTMDKAEELFNEMPERNVVSWNAMVSGYLMNGHV 199
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLM--GKSAHGFIVKNEWELNEQ 186
+ ++ F+ M + + + G + + LL G G +V
Sbjct: 200 EKAIEFFKLMPKRDSASLRALVSGLIQNDKLVEAERILLQYGGNVGKGDLV--------D 251
Query: 187 IATILVDMYAKCGFLKYALMVFELM--------EERNVISWTALICGSAHRGYSEDALSL 238
L+ Y + G A +F+ + RNVISW ++I G A L
Sbjct: 252 AYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSAREL 311
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F+ M V+ + ++ +++ V + E F + EP + M+ F
Sbjct: 312 FDKM----VERDTFSWNTMISGYVQILDMKEASNLFSRMP-----EPDTLSWNMMISGFS 362
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ-ALRMVKPE 352
+ G L+ A+++ + + E +++ W S ++ ++++ + A + Q L KP+
Sbjct: 363 EIGSLKLAHDLFKRIP-EKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPD 416
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 108/267 (40%), Gaps = 55/267 (20%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA- 127
AR+LFD N +TWN MI Y K + +AR FE MP R++ SW+ M++ Y++ G
Sbjct: 76 ARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNRDIVSWNLMLSGYISCGGK 135
Query: 128 -YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ 186
+ +F +M + ++ + M LSG
Sbjct: 136 FVERARNMFDQMPETDCVSWNTM-----LSG----------------------------- 161
Query: 187 IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
YAK G + A +F M ERNV+SW A++ G G+ E A+ F++M
Sbjct: 162 --------YAKSGTMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMP--- 210
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
K + + +++ + + E + + Y ++ +G+ G EA
Sbjct: 211 -KRDSASLRALVSGLIQNDKLVEAERILLQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEA 269
Query: 307 YEVIRTMRL-------EPNVIIWGSFL 326
++ + L NVI W S +
Sbjct: 270 RKLFDRIPLCCDCGYSRRNVISWNSMI 296
>gi|125570503|gb|EAZ12018.1| hypothetical protein OsJ_01900 [Oryza sativa Japonica Group]
Length = 657
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 124/384 (32%), Positives = 224/384 (58%), Gaps = 9/384 (2%)
Query: 19 ILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSF-GFARKLFDELP 77
++ ++K+C+ + ++ LH+ ILK GF +H +V +L+H Y F A+ F
Sbjct: 279 LVGLVKACSRHSAVSEGQQLHTVILKNGFDAHAFVQATLIHYYGSCDFIDHAQMQFKLSD 338
Query: 78 ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
+ + +WN ++ + V EAR F+ MP R+ SWS +I+ Y+ +G + L++F
Sbjct: 339 KSHVASWNALMASLLRRNLVHEARQLFDDMPERDTISWSTLISGYVQSGNSNMALQIFCS 398
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
M+ + G+ P+++T+ + LS ++ G++G + H +I+ +L ++++ L+++YAK
Sbjct: 399 ML-DAGVEPNEITLASALSAVANSGTLG--QARWIHDYIISRSIQLTDKLSAGLINVYAK 455
Query: 198 CGFLKYALMVFELMEERN--VISWTALICGSAHRGYSEDALSLFEMMQATG-VKPNEMTF 254
CG + A+ +F +++++ V W ++IC A GY +L LF +Q+T +KPN +T+
Sbjct: 456 CGSIAEAVQLFNHVKDKSISVSPWNSIICNLAIHGYVNMSLELFSQLQSTTHIKPNSITY 515
Query: 255 TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR 314
GVL AC H G+V EG++ F+ + ++Y ++P I+HYGCMVDL +AG+LEEA +I+TM
Sbjct: 516 LGVLNACCHAGMVAEGKRQFESMRQQYGIQPEIKHYGCMVDLLCRAGYLEEAELLIKTMP 575
Query: 315 LEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGA 374
++ +V+ WG LAA + + E+ ++ L + P + G + +LY W
Sbjct: 576 MKADVVAWGCILAAARTQGNVALGEKAAEE-LSKLDPSH-GASKIALSNLYADAGHWSNV 633
Query: 375 ERVRKLMLNQNVRKARGSSVISSL 398
VRK + N+N+ + GSS I L
Sbjct: 634 SVVRKELQNENLERLTGSSGILQL 657
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 105/419 (25%), Positives = 188/419 (44%), Gaps = 45/419 (10%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKS--CTHFNNLTVIHHLHSHILKLGFISHVYVATSLL 58
+ +F M ++V + ++ +L + C H + H ++ G V VAT+L+
Sbjct: 127 LAVFRDMLTEAVQPNEVTLAEVLTAMACDH-GAPAPVGAAHGVAVRRGLDGFVIVATNLV 185
Query: 59 HEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
H Y V+ AR +F+ +P+RN VTWNTM+ Y K+G + A + F +P R+ SW
Sbjct: 186 HAYGAVSQVPSARSIFELMPDRNTVTWNTMLNCYVKAGMINMAAEVFGVIPERDEVSWLT 245
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MI Y+ A L+ + M+ G+ +++ + ++ CS +V G+ H I+
Sbjct: 246 MIDGYMCADFLLQALRTYVAMVGTVGIRANEVILVGLVKACSRHSAVS--EGQQLHTVIL 303
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFEL--------------------------- 210
KN ++ + + L+ Y C F+ +A M F+L
Sbjct: 304 KNGFDAHAFVQATLIHYYGSCDFIDHAQMQFKLSDKSHVASWNALMASLLRRNLVHEARQ 363
Query: 211 ----MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
M ER+ ISW+ LI G G S AL +F M GV+PNE+T L+A ++G
Sbjct: 364 LFDDMPERDTISWSTLISGYVQSGNSNMALQIFCSMLDAGVEPNEITLASALSAVANSGT 423
Query: 267 VDEGR-KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEP-NVIIWGS 324
+ + R + +I L ++ +++++ K G + EA ++ ++ + +V W S
Sbjct: 424 LGQARWIHDYIISRSIQLTDKLS--AGLINVYAKCGSIAEAVQLFNHVKDKSISVSPWNS 481
Query: 325 FLAACKEHKQFDMAERVIK--QALRMVKPENDG--GVFTLICDLYTMNEKWEGAERVRK 379
+ H +M+ + Q+ +KP + GV C + E E +R+
Sbjct: 482 IICNLAIHGYVNMSLELFSQLQSTTHIKPNSITYLGVLNACCHAGMVAEGKRQFESMRQ 540
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 163/347 (46%), Gaps = 47/347 (13%)
Query: 37 HLHSHILKLGFI-SHVYVATSLLHEYVVTSFGFARKLFDELPE--RNAVTWNTMIKGYSK 93
LH+ K G + S+++V SLL Y + A LFDE+P R+A N ++ ++
Sbjct: 29 QLHALAAKSGLLTSNLFVRNSLLAFYSRVAPSLAYHLFDEIPPLLRDATAQNILLSALAR 88
Query: 94 SGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGA 153
+G + A+ MP R+ S++ +I+A +G + L +FR+M++ E + P+++T+
Sbjct: 89 AGRLERAQCLLAEMPQRDAVSFTTVISALSRSGHPERALAVFRDMLT-EAVQPNEVTLAE 147
Query: 154 VLS--GCSH-----LGSV-GLLMGKSAHGFIV------------------KNEWELNEQI 187
VL+ C H +G+ G+ + + GF++ ++ +EL
Sbjct: 148 VLTAMACDHGAPAPVGAAHGVAVRRGLDGFVIVATNLVHAYGAVSQVPSARSIFELMPDR 207
Query: 188 ATI----LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQ 243
T+ +++ Y K G + A VF ++ ER+ +SW +I G + AL + M
Sbjct: 208 NTVTWNTMLNCYVKAGMINMAAEVFGVIPERDEVSWLTMIDGYMCADFLLQALRTYVAMV 267
Query: 244 AT-GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI-DEEYDLEPRIQHYGCMVDLFGKAG 301
T G++ NE+ G++ AC V EG++ +I +D +Q ++ +G
Sbjct: 268 GTVGIRANEVILVGLVKACSRHSAVSEGQQLHTVILKNGFDAHAFVQ--ATLIHYYGSCD 325
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAA------CKEHKQF--DMAER 340
F++ A + + + +V W + +A+ E +Q DM ER
Sbjct: 326 FIDHAQMQFK-LSDKSHVASWNALMASLLRRNLVHEARQLFDDMPER 371
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 10/178 (5%)
Query: 190 ILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP 249
IL+ A+ G L+ A + M +R+ +S+T +I + G+ E AL++F M V+P
Sbjct: 81 ILLSALARAGRLERAQCLLAEMPQRDAVSFTTVISALSRSGHPERALAVFRDMLTEAVQP 140
Query: 250 NEMTFTGVLT--ACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
NE+T VLT AC H G + + L+ + +V +G + A
Sbjct: 141 NEVTLAEVLTAMACDHGAPAPVGAAHGVAV--RRGLDGFVIVATNLVHAYGAVSQVPSAR 198
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365
+ M + N + W + L + +MA V V PE D + + D Y
Sbjct: 199 SIFELMP-DRNTVTWNTMLNCYVKAGMINMAAEVFG-----VIPERDEVSWLTMIDGY 250
>gi|224122234|ref|XP_002318784.1| predicted protein [Populus trichocarpa]
gi|222859457|gb|EEE97004.1| predicted protein [Populus trichocarpa]
Length = 511
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 125/383 (32%), Positives = 219/383 (57%), Gaps = 11/383 (2%)
Query: 14 SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKL 72
+D + ++L+S ++ + +HS I+ + + + SL+ +YV K+
Sbjct: 6 ADYQELYNLLQSGKTSMDIKTLSKIHSRIITFSYGTSPSLMASLMLKYVHCNCRSIVYKV 65
Query: 73 FDEL--PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDP 130
D++ + V N +I ++ N A+ F +M R+V +W+ MI Y+ ++
Sbjct: 66 IDQVFCWSIDLVELNLIIDKLMRTENYRVAKMVFNKMRARDVVTWNTMIGGYVRKARFEE 125
Query: 131 GLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATI 190
L+LFR M + + PD+ T +V++GC+ LG+ L + H +++ ELN +++
Sbjct: 126 ALRLFRFM-NKSNVEPDKYTFASVINGCAKLGA--LKHAQWVHELLIEKRIELNFILSSA 182
Query: 191 LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250
L+DMY+KCG ++ A +F+ ++ NV W A+I G A G + DA+ +F M+ V P+
Sbjct: 183 LIDMYSKCGKIQTAKEIFDGVQRNNVCIWNAMISGLAVHGLALDAIKVFTKMEVENVLPD 242
Query: 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI 310
+TF G+LTAC H GLV EGRKYF ++ Y ++P I+HYG MVDL G+AG LEEA+ +I
Sbjct: 243 AITFLGILTACSHCGLVKEGRKYFDLMRSRYSVQPHIEHYGAMVDLLGRAGLLEEAFAMI 302
Query: 311 RTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEK 370
++M +EP+V+IW + L AC+ +K+ ++ E + R+ G + L+ ++Y ++
Sbjct: 303 KSMPMEPDVVIWRALLGACRTYKKPELGEAAMANISRL-----RSGDYVLLSNIYCSQKR 357
Query: 371 WEGAERVRKLMLNQNVRKARGSS 393
W+ A+ V ++M + V K RG S
Sbjct: 358 WDTAQGVWEMMKKKGVHKVRGKS 380
>gi|449454362|ref|XP_004144924.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Cucumis sativus]
Length = 664
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 122/330 (36%), Positives = 201/330 (60%), Gaps = 7/330 (2%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A LF +PE + ++WN MI G+S+ G++ A D F+R+P +++ SW++MI+ Y Y
Sbjct: 339 ASNLFSRMPEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDY 398
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+ +F +M EG PD+ T+ ++LS C+ G V L++G H + K + + I
Sbjct: 399 KGAMNIFLQM-QLEGKKPDRHTLSSILSACA--GLVDLVLGTQIHQLVTK-AFIADLPIN 454
Query: 189 TILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
LV MY++CG + A MVF+ M +R+VISW A+I G A+ G++ +AL LF++M+ V
Sbjct: 455 NSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNV 514
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
+P+ +TF VL AC H GL++EGR+ F + + ++P+++HY +VD+ G+ G LEEA
Sbjct: 515 QPSYITFISVLNACAHAGLIEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAM 574
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM 367
+I +M EP+ +WG+ L ACK H +MA R +AL ++PE+ + L+ ++Y
Sbjct: 575 SLINSMPCEPDKAVWGALLGACKVHNNVEMA-RAAAEALMKLQPESSAP-YVLLHNMYAD 632
Query: 368 NEKWEGAERVRKLMLNQNVRKARGSSVISS 397
+W+ A +R +M NV+K G S + S
Sbjct: 633 VGRWDDAAEMRTMMEKNNVQKDAGYSRVDS 662
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 140/300 (46%), Gaps = 39/300 (13%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR +FD++PE + V+WNTM+ GY+KSG + +A + F MP RNV SW+AM++ YL G
Sbjct: 140 ARNMFDQMPETDCVSWNTMLSGYAKSGMMDKAEELFNEMPERNVVSWNAMVSGYLMNGHV 199
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSH----LGSVGLLM---GKSAHGFIVKNEW 181
+ ++ F+ M D ++ A++SG + + +L+ G G +V
Sbjct: 200 EKAIEFFKLMPKR-----DSASLRALISGLIQNDKLVEAERILLQYGGNVGKGDLV---- 250
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELM--------EERNVISWTALICGSAHRGYSE 233
L+ Y + G A +F+ + RNVISW ++I G
Sbjct: 251 ----DAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDIV 306
Query: 234 DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293
A LF+ M V+ + ++ +++ V + E F + EP + M
Sbjct: 307 SARELFDKM----VERDTFSWNTMISGYVQILDMKEASNLFSRMP-----EPDTLSWNMM 357
Query: 294 VDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQ-ALRMVKPE 352
+ F + G L+ A+++ + + E +++ W S ++ ++++ + A + Q L KP+
Sbjct: 358 ISGFSEIGSLKLAHDLFKRIP-EKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPD 416
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 108/267 (40%), Gaps = 55/267 (20%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA- 127
AR+LFD N +TWN MI Y K + +AR FE MP R++ SW+ M++ Y++ G
Sbjct: 76 ARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNRDIVSWNLMLSGYISCGGK 135
Query: 128 -YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ 186
+ +F +M + ++ + M LSG
Sbjct: 136 FVERARNMFDQMPETDCVSWNTM-----LSG----------------------------- 161
Query: 187 IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
YAK G + A +F M ERNV+SW A++ G G+ E A+ F++M
Sbjct: 162 --------YAKSGMMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMP--- 210
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
K + + +++ + + E + + Y ++ +G+ G EA
Sbjct: 211 -KRDSASLRALISGLIQNDKLVEAERILLQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEA 269
Query: 307 YEVIRTMRL-------EPNVIIWGSFL 326
++ + L NVI W S +
Sbjct: 270 RKLFDRIPLCCDCGYSRRNVISWNSMI 296
>gi|194696956|gb|ACF82562.1| unknown [Zea mays]
gi|413957085|gb|AFW89734.1| selenium-binding protein-like protein [Zea mays]
Length = 605
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 138/386 (35%), Positives = 216/386 (55%), Gaps = 12/386 (3%)
Query: 14 SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVY-VATSLLHEYVVTSFGFARKL 72
D F+ IL S L ++ LH+ +LKLGF +H + L A ++
Sbjct: 99 PDHFTFPQILPSA---QPLHLVAQLHALLLKLGFHAHTQSLNALLAAYLANARPDLASRV 155
Query: 73 F-DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPG 131
F + V+W TM+ G K G +AR F+ MP RN+ SW+AM++ Y+ A +
Sbjct: 156 FRGGGGALDVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDA 215
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
L++F EM + G+ + + C+ G+ L G+ H ++ ++ +++E++AT +
Sbjct: 216 LEVFDEMRAR-GVDGNVFVAATAVVACT--GAGALARGREVHRWVEQSGIQMDEKLATAV 272
Query: 192 VDMYAKCGFLKYALMVFELME--ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP 249
VDMY KCG ++ A VFE + + + +W +I G A G EDAL LF M+ GV P
Sbjct: 273 VDMYCKCGCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGEDALKLFGRMEREGVAP 332
Query: 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEV 309
+++T VLTAC H G++ EGR YF + + Y +EP+++HYGCMVDL+G+AG LEEA +V
Sbjct: 333 DDVTLVNVLTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKV 392
Query: 310 IRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNE 369
I+ M +EP+V + G+ A K H D+ E + + + + P+N G + L+ +L
Sbjct: 393 IQDMPMEPDVGVLGALFGASKIHGDVDLGEAIGWRVIEL-DPQNS-GRYVLLANLLATAG 450
Query: 370 KWEGAERVRKLMLNQNVRKARGSSVI 395
+WE RVR+LM +NV K G SVI
Sbjct: 451 RWEDVARVRRLMDERNVSKEAGRSVI 476
>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
Length = 648
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 134/399 (33%), Positives = 218/399 (54%), Gaps = 42/399 (10%)
Query: 1 MQLFSQMHRQSVP-SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+ ++ +M R P +SF++ LK+C LH+ L+ G + YV T LL+
Sbjct: 159 LAVYRRMLRAGSPRPNSFTLAFALKACAAVPAPGEGRQLHAQALRQGLATSAYVQTGLLN 218
Query: 60 EYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y AR +FD + +G+ +N+ +WSAM
Sbjct: 219 LYAKCEQVALARTVFDGM-----------------AGD-------------KNLVAWSAM 248
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
++ Y G + L LFREM + G+ PD++T+ +V+S C+ G++ L GK H +I +
Sbjct: 249 VSGYSRVGMVNEALGLFREMQA-VGVEPDEVTMVSVISACAKAGALDL--GKWVHAYIDR 305
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
++ +++T L+DMYAKCG ++ A VF+ M E++ +W+A+I G A G EDAL L
Sbjct: 306 KGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGL 365
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F M V+PN +TF GVL+AC H+GLV++GR+Y+ ++ + ++P +++YGCMVDL
Sbjct: 366 FSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIM-QNLGIKPSMENYGCMVDLLC 424
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMV--KPENDGG 356
++G L++AY + M + PN +IW + L ACK + D+AE K+ L + PEN
Sbjct: 425 RSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNPEN--- 481
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ +LY N +W+ +R+ M +NV G S I
Sbjct: 482 -YVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSI 519
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/369 (23%), Positives = 160/369 (43%), Gaps = 56/369 (15%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHI--LKLGFISHVYVATSLL 58
MQL ++P ++ HI+ L + H+H+ L+L ++ + + LL
Sbjct: 50 MQLLKPKEAATLPREALEA-HIVSLVRRCPGLLALRSAHAHLTRLRLPRLTAAFALSKLL 108
Query: 59 HEYVVTSFGFA---------RKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL 109
V A R LFD++P+ A +N++I+ +G+
Sbjct: 109 ASCVSAPAPAAAQAAASSYARNLFDQIPDPTAFCYNSLIRALPAAGSA------------ 156
Query: 110 RNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMG 169
P L ++R M+ P+ T+ L C+ + + G G
Sbjct: 157 --------------------PALAVYRRMLRAGSPRPNSFTLAFALKACAAVPAPG--EG 194
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAH 228
+ H ++ + + T L+++YAKC + A VF+ M ++N+++W+A++ G +
Sbjct: 195 RQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGYSR 254
Query: 229 RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE---YDLEP 285
G +AL LF MQA GV+P+E+T V++AC G +D G+ ID + DLE
Sbjct: 255 VGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLEL 314
Query: 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQA 345
++D++ K G +E A V M +E + W + + H + A + +
Sbjct: 315 STA----LIDMYAKCGLIERARGVFDAM-VEKDTKAWSAMIVGFAIHGLVEDALGLFSRM 369
Query: 346 LRM-VKPEN 353
L + V+P N
Sbjct: 370 LELKVRPNN 378
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,158,764,174
Number of Sequences: 23463169
Number of extensions: 250756278
Number of successful extensions: 681228
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7668
Number of HSP's successfully gapped in prelim test: 3454
Number of HSP's that attempted gapping in prelim test: 535736
Number of HSP's gapped (non-prelim): 52827
length of query: 400
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 255
effective length of database: 8,957,035,862
effective search space: 2284044144810
effective search space used: 2284044144810
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 78 (34.7 bits)