BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048364
(400 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 70/168 (41%), Gaps = 21/168 (12%)
Query: 157 GCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER-- 214
G H+ S + + A ++ + E + +DM +K G + AL +++
Sbjct: 1 GAGHMASPSENLSRKAKKKAIQ---QSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGV 57
Query: 215 -------NVISWTALICGSAHRGYSEDALS----LFEMMQATGVKPNEMTFTGVLTACVH 263
NV+ + + +A LS +F+ M V PNE TFT V
Sbjct: 58 QLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVA 117
Query: 264 TGLVDEGRKYFKMIDE--EYDLEPRIQHYGCMVDLFGKAGFLEEAYEV 309
D+ F M+ + + ++PR++ YG + F + G ++AYEV
Sbjct: 118 K---DDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 75 ELPERNAVTWNTMIKGYSKSGNVCEARDFFER---MPLRNVASWSAMIAAYLNAGAYDPG 131
EL R+A W + Y K G+ EA +++++ + R+ +W + AY G YD
Sbjct: 29 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 88
Query: 132 LKLFREMI 139
++ +++ +
Sbjct: 89 IEYYQKAL 96
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 75 ELPERNAVTWNTMIKGYSKSGNVCEARDFFER---MPLRNVASWSAMIAAYLNAGAYDPG 131
EL R+A W + Y K G+ EA +++++ + R+ +W + AY G YD
Sbjct: 63 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 122
Query: 132 LKLFREMI 139
++ +++ +
Sbjct: 123 IEYYQKAL 130
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 81 AVTWNTMIKGYSKSGNVCEARDFFER---MPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
A W + Y K G+ EA +++++ + R+ +W + AY G YD ++ +++
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 138 MI 139
+
Sbjct: 61 AL 62
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 35.0 bits (79), Expect = 0.072, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 75 ELPERNAVTWNTMIKGYSKSGNVCEARDFFER---MPLRNVASWSAMIAAYLNAGAYDPG 131
EL NA W + Y K G+ EA +++++ + N +W + AY G YD
Sbjct: 37 ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 96
Query: 132 LKLFREMI 139
++ +++ +
Sbjct: 97 IEYYQKAL 104
Score = 32.7 bits (73), Expect = 0.41, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 77 PERNAVTWNTMIKGYSKSGNVCEARDFFER---MPLRNVASWSAMIAAYLNAGAYDPGLK 133
P +A W + Y K G+ EA +++++ + N +W + AY G YD ++
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 134 LFREMI 139
+++ +
Sbjct: 65 YYQKAL 70
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 33.9 bits (76), Expect = 0.17, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 75 ELPERNAVTWNTMIKGYSKSGNVCEARDFFER---MPLRNVASWSAMIAAYLNAGAYDPG 131
EL NA W + Y K G+ EA +++++ + N +W + AY G YD
Sbjct: 37 ELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEA 96
Query: 132 LKLFREMI 139
++ +++ +
Sbjct: 97 IEYYQKAL 104
Score = 32.0 bits (71), Expect = 0.62, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 77 PERNAVTWNTMIKGYSKSGNVCEARDFFER---MPLRNVASWSAMIAAYLNAGAYDPGLK 133
P +A W + Y K G+ EA +++++ + N +W + AY G YD ++
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 134 LFREMI 139
+++ +
Sbjct: 65 YYQKAL 70
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE--YDL 283
S + G S +F+ V PNE TFT V D+ F + + + +
Sbjct: 81 SPNPGLSR-GFDIFKQXIVDKVVPNEATFTNGARLAVAK---DDPEXAFDXVKQXKAFGI 136
Query: 284 EPRIQHYGCMVDLFGKAGFLEEAYEV 309
+PR++ YG + F + G ++AYEV
Sbjct: 137 QPRLRSYGPALFGFCRKGDADKAYEV 162
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 32.7 bits (73), Expect = 0.41, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 77 PERNAVTWNTMIKGYSKSGNVCEARDFFER---MPLRNVASWSAMIAAYLNAGAYDPGLK 133
P +A W + Y K G+ EA +++++ + N +W + AY G YD ++
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 134 LFREMI 139
+++ +
Sbjct: 65 YYQKAL 70
>pdb|1PA4|A Chain A, Solution Structure Of A Putative Ribosome-Binding Factor
From Mycoplasma Pneumoniae (Mpn156)
Length = 116
Score = 31.2 bits (69), Expect = 0.95, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 13/63 (20%)
Query: 31 NLTVIHHLHSHILKLGFISHVYVATSLLH-------------EYVVTSFGFARKLFDELP 77
N TVIH +++ +K G ++HV ++ LLH + VV +F A+ +F +
Sbjct: 18 NRTVIHEIYNETVKTGHVTHVKLSDDLLHVTVYLDCYNREQIDRVVGAFNQAKGVFSRVL 77
Query: 78 ERN 80
N
Sbjct: 78 AHN 80
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 80 NAVTWNTMIKGYSKSGNVCEARDFFER---MPLRNVASWSAMIAAYLNAGAYDPGLKLFR 136
+A W + Y K G+ EA +++++ + R+ +W + AY G YD ++ ++
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 61
Query: 137 EMI 139
+ +
Sbjct: 62 KAL 64
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 30.0 bits (66), Expect = 2.1, Method: Composition-based stats.
Identities = 13/66 (19%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 77 PERNAVTWNTMIKGYSKSGNVCEARDFFER---MPLRNVASWSAMIAAYLNAGAYDPGLK 133
P +A W + Y K G+ +A +++++ + N ++W + AY G Y ++
Sbjct: 5 PGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIE 64
Query: 134 LFREMI 139
+++ +
Sbjct: 65 YYQKAL 70
>pdb|3QLI|A Chain A, Crystal Structure Of Ripa From Yersinia Pestis
pdb|3QLI|B Chain B, Crystal Structure Of Ripa From Yersinia Pestis
pdb|3QLK|A Chain A, Crystal Structure Of Ripa From Yersinia Pestis
pdb|3QLK|B Chain B, Crystal Structure Of Ripa From Yersinia Pestis
Length = 455
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
+KP M T V A + G+ D GRK + + PR+ +D F
Sbjct: 94 IKPYSMFVTAVERALIRRGIEDGGRKVVNYVPSNFHQAPRLLAEEIGIDTF 144
>pdb|3SQV|A Chain A, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|B Chain B, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
Length = 616
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 82 VTW-NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM-- 138
++W N I Y ++G++ +A +FER P V+ S+ I +N D + FRE+
Sbjct: 271 MSWFNNSIMMYMENGSLLQAGMYFERHPGAMVSYNSSFIQIVMNGSRRDGMQERFRELYE 330
Query: 139 --ISNEGLTP 146
+ NE + P
Sbjct: 331 VYLKNEKVYP 340
>pdb|3NAW|A Chain A, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NAW|B Chain B, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|A Chain A, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|B Chain B, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|C Chain C, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|D Chain D, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
Length = 613
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 82 VTW-NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM-- 138
++W N I Y ++G++ +A +FER P V+ S+ I +N D + FRE+
Sbjct: 268 MSWFNNSIMMYMENGSLLQAGMYFERHPGAMVSYNSSFIQIVMNGSRRDGMQERFRELYE 327
Query: 139 --ISNEGLTP 146
+ NE + P
Sbjct: 328 VYLKNEKVYP 337
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 8/129 (6%)
Query: 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL-VDEGRKYFKMIDEEY-DL 283
+AH +E+ L+ F + + TG+ P+++ L H L +EG+ ++++ E++ DL
Sbjct: 3 AAHSKSTEECLAYFGVSETTGLTPDQVKRH--LEKYGHNELPAEEGKSLWELVIEQFEDL 60
Query: 284 EPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIK 343
RI + + EE E I T +EP VI+ A Q AE I
Sbjct: 61 LVRILLLAACISFV--LAWFEEGEETI-TAFVEPFVILLILIANAIVGVWQERNAENAI- 116
Query: 344 QALRMVKPE 352
+AL+ +PE
Sbjct: 117 EALKEYEPE 125
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 8/129 (6%)
Query: 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL-VDEGRKYFKMIDEEY-DL 283
+AH +E+ L+ F + + TG+ P+++ L H L +EG+ ++++ E++ DL
Sbjct: 4 AAHSKSTEECLAYFGVSETTGLTPDQVKRH--LEKYGHNELPAEEGKSLWELVIEQFEDL 61
Query: 284 EPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIK 343
RI + + EE E I T +EP VI+ A Q AE I
Sbjct: 62 LVRILLLAACISFV--LAWFEEGEETI-TAFVEPFVILLILIANAIVGVWQERNAENAI- 117
Query: 344 QALRMVKPE 352
+AL+ +PE
Sbjct: 118 EALKEYEPE 126
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 8/129 (6%)
Query: 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL-VDEGRKYFKMIDEEY-DL 283
+AH +E+ L+ F + + TG+ P+++ L H L +EG+ ++++ E++ DL
Sbjct: 3 AAHSKSTEECLAYFGVSETTGLTPDQVKRH--LEKYGHNELPAEEGKSLWELVIEQFEDL 60
Query: 284 EPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIK 343
RI + + EE E I T +EP VI+ A Q AE I
Sbjct: 61 LVRILLLAACISFV--LAWFEEGEETI-TAFVEPFVILLILIANAIVGVWQERNAENAI- 116
Query: 344 QALRMVKPE 352
+AL+ +PE
Sbjct: 117 EALKEYEPE 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,943,415
Number of Sequences: 62578
Number of extensions: 496469
Number of successful extensions: 1045
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1036
Number of HSP's gapped (non-prelim): 21
length of query: 400
length of database: 14,973,337
effective HSP length: 101
effective length of query: 299
effective length of database: 8,652,959
effective search space: 2587234741
effective search space used: 2587234741
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)