BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048364
(400 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 317 bits (812), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 158/395 (40%), Positives = 247/395 (62%), Gaps = 6/395 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ +M S P ++++ +LK+C++ + +H+ I KLG+ + VY SL++ Y
Sbjct: 102 LYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYA 161
Query: 63 VT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
VT +F A LFD +PE + V+WN++IKGY K+G + A F +M +N SW+ MI+
Sbjct: 162 VTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISG 221
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y+ A L+LF EM N + PD +++ LS C+ LG+ L GK H ++ K
Sbjct: 222 YVQADMNKEALQLFHEM-QNSDVEPDNVSLANALSACAQLGA--LEQGKWIHSYLNKTRI 278
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
++ + +L+DMYAKCG ++ AL VF+ +++++V +WTALI G A+ G+ +A+S F
Sbjct: 279 RMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFME 338
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
MQ G+KPN +TFT VLTAC +TGLV+EG+ F ++ +Y+L+P I+HYGC+VDL G+AG
Sbjct: 339 MQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAG 398
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L+EA I+ M L+PN +IWG+ L AC+ HK ++ E I + L + P + GG +
Sbjct: 399 LLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEE-IGEILIAIDPYH-GGRYVHK 456
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
+++ M++KW+ A R+LM Q V K G S IS
Sbjct: 457 ANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTIS 491
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/342 (24%), Positives = 161/342 (47%), Gaps = 37/342 (10%)
Query: 11 SVPSDSFSILH-------ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV 63
+V S SFS+ H L+ C+ L IH + +LK G + Y T L + +
Sbjct: 2 NVISCSFSLEHNLYETMSCLQRCSKQEELKQIH---ARMLKTGLMQDSYAITKFL-SFCI 57
Query: 64 TS-----FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERM----PLRNVAS 114
+S +A+ +FD + WN MI+G+S S + ++RM N +
Sbjct: 58 SSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYT 117
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
+ +++ A N A++ ++ + I+ G D + ++++ + G+ L AH
Sbjct: 118 FPSLLKACSNLSAFEETTQIHAQ-ITKLGYENDVYAVNSLINSYAVTGNFKL-----AH- 170
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
+ E ++ ++ Y K G + AL +F M E+N ISWT +I G +++
Sbjct: 171 LLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKE 230
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQH---YG 291
AL LF MQ + V+P+ ++ L+AC G +++G+ ++ + RI+ G
Sbjct: 231 ALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLN-----KTRIRMDSVLG 285
Query: 292 C-MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
C ++D++ K G +EEA EV + ++ + +V W + ++ H
Sbjct: 286 CVLIDMYAKCGEMEEALEVFKNIK-KKSVQAWTALISGYAYH 326
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 97/228 (42%), Gaps = 41/228 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+QLF +M V D+ S+ + L +C L +HS++ K
Sbjct: 232 LQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRI------------- 278
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
++V +I Y+K G + EA + F+ + ++V +W+A+I+
Sbjct: 279 -----------------RMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALIS 321
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV--GLLMGKSAHGFIVK 178
Y G + F EM G+ P+ +T AVL+ CS+ G V G L+ S ++
Sbjct: 322 GYAYHGHGREAISKFMEM-QKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYS-----ME 375
Query: 179 NEWELNEQIA--TILVDMYAKCGFLKYA-LMVFELMEERNVISWTALI 223
++ L I +VD+ + G L A + E+ + N + W AL+
Sbjct: 376 RDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALL 423
>sp|Q9C501|PPR70_ARATH Pentatricopeptide repeat-containing protein At1g33350
OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1
Length = 538
Score = 298 bits (763), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 155/400 (38%), Positives = 239/400 (59%), Gaps = 10/400 (2%)
Query: 2 QLFSQMHRQSVP-SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
F M +SVP + F +LKS + ++ +H+H+ K GF +V V T+LLH
Sbjct: 111 SFFRLMVNRSVPRPNHFIYPLVLKSTPYLSSAFSTPLVHTHLFKSGFHLYVVVQTALLHS 170
Query: 61 YV--VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y V+ AR+LFDE+ ERN V+W M+ GY++SG++ A FE MP R+V SW+A+
Sbjct: 171 YASSVSHITLARQLFDEMSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAI 230
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
+AA G + + LFR MI+ + P+++T+ VLS C+ G+ L + K H F +
Sbjct: 231 LAACTQNGLFLEAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGT--LQLAKGIHAFAYR 288
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ + ++ LVD+Y KCG L+ A VF++ ++++ +W ++I A G SE+A+++
Sbjct: 289 RDLSSDVFVSNSLVDLYGKCGNLEEASSVFKMASKKSLTAWNSMINCFALHGRSEEAIAV 348
Query: 239 FEMM---QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
FE M +KP+ +TF G+L AC H GLV +GR YF ++ + +EPRI+HYGC++D
Sbjct: 349 FEEMMKLNINDIKPDHITFIGLLNACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLID 408
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
L G+AG +EA EV+ TM+++ + IWGS L ACK H D+AE +K L + P N+G
Sbjct: 409 LLGRAGRFDEALEVMSTMKMKADEAIWGSLLNACKIHGHLDLAEVAVKN-LVALNP-NNG 466
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G ++ +LY WE A R RK++ +QN K G S I
Sbjct: 467 GYVAMMANLYGEMGNWEEARRARKMIKHQNAYKPPGWSRI 506
Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 125/297 (42%), Gaps = 43/297 (14%)
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAY--DPGLKLFREMISNEGLTPDQMTIGA 153
N+ AR F+R N ++A++ AY ++ FR M++ P+
Sbjct: 72 NLSYARFIFDRFSFPNTHLYAAVLTAYSSSLPLHASSAFSFFRLMVNRSVPRPNHFIYPL 131
Query: 154 VLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA-KCGFLKYALMVFELME 212
VL +L S H + K+ + L + T L+ YA + A +F+ M
Sbjct: 132 VLKSTPYLSSA--FSTPLVHTHLFKSGFHLYVVVQTALLHSYASSVSHITLARQLFDEMS 189
Query: 213 ERNVISWTALICGSAHRGYSEDALSLFE-------------------------------- 240
ERNV+SWTA++ G A G +A++LFE
Sbjct: 190 ERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFLEAVSLFRR 249
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ ++PNE+T VL+AC TG + K DL + +VDL+GK
Sbjct: 250 MINEPSIRPNEVTVVCVLSACAQTGTLQLA-KGIHAFAYRRDLSSDVFVSNSLVDLYGKC 308
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM----VKPEN 353
G LEEA V + M + ++ W S + H + + A V ++ +++ +KP++
Sbjct: 309 GNLEEASSVFK-MASKKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNINDIKPDH 364
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 292 bits (747), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 137/396 (34%), Positives = 247/396 (62%), Gaps = 6/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L +M R V S ++L +L +C+ + + +H ++ + + + +L++
Sbjct: 221 IELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNA 280
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A ++F + R+ ++W +++KGY + GN+ AR +F++MP+R+ SW+ MI
Sbjct: 281 YAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMI 340
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
YL AG ++ L++FREM S G+ PD+ T+ +VL+ C+HLGS L +G+ +I KN
Sbjct: 341 DGYLRAGCFNESLEIFREMQS-AGMIPDEFTMVSVLTACAHLGS--LEIGEWIKTYIDKN 397
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + + + L+DMY KCG + A VF M++R+ +WTA++ G A+ G ++A+ +F
Sbjct: 398 KIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVF 457
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MQ ++P+++T+ GVL+AC H+G+VD+ RK+F + ++ +EP + HYGCMVD+ G+
Sbjct: 458 FQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGR 517
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG ++EAYE++R M + PN I+WG+ L A + H MAE K+ L + +P+N G V+
Sbjct: 518 AGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILEL-EPDN-GAVYA 575
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+C++Y ++W+ VR+ +++ ++K G S+I
Sbjct: 576 LLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLI 611
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/386 (24%), Positives = 169/386 (43%), Gaps = 68/386 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNN-LTVIHHLHSHILKLGFISHVYVATSLLH 59
++L+ M ++ V DS + +L L LH H++K G S++YV
Sbjct: 119 VRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQ----- 173
Query: 60 EYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
N ++K YS G + AR F+R +V SW+ MI
Sbjct: 174 -------------------------NALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMI 208
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ Y Y+ ++L EM N ++P +T+ VLS CS + L K H ++ +
Sbjct: 209 SGYNRMKEYEESIELLVEMERNL-VSPTSVTLLLVLSACSKVKDKDLC--KRVHEYVSEC 265
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE------ 233
+ E + ++ LV+ YA CG + A+ +F M+ R+VISWT+++ G RG +
Sbjct: 266 KTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYF 325
Query: 234 -------------------------DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
++L +F MQ+ G+ P+E T VLTAC H G ++
Sbjct: 326 DQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLE 385
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
G ++ K ++ ++ + ++D++ K G E+A +V M + + W + +
Sbjct: 386 IG-EWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMD-QRDKFTWTAMVVG 443
Query: 329 CKEHKQFDMAERVIKQALRM-VKPEN 353
+ Q A +V Q M ++P++
Sbjct: 444 LANNGQGQEAIKVFFQMQDMSIQPDD 469
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 89/356 (25%), Positives = 146/356 (41%), Gaps = 40/356 (11%)
Query: 10 QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFA 69
+S+ +D + IL C + LHS + G V + F
Sbjct: 28 ESISNDYSRFISILGVCKTTDQF---KQLHSQSITRG---------------VAPNPTFQ 69
Query: 70 RKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYD 129
+KLF V W + + G+V A F ++P +V W+ MI +
Sbjct: 70 KKLF--------VFWCSRL-----GGHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDG 116
Query: 130 PGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIAT 189
G++L+ M+ EG+TPD T +L+G G L GK H +VK N +
Sbjct: 117 EGVRLYLNML-KEGVTPDSHTFPFLLNGLKRDGG-ALACGKKLHCHVVKFGLGSNLYVQN 174
Query: 190 ILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP 249
LV MY+ CG + A VF+ + +V SW +I G E+++ L M+ V P
Sbjct: 175 ALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSP 234
Query: 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEV 309
+T VL+AC D ++ + + E EP ++ +V+ + G ++ A +
Sbjct: 235 TSVTLLLVLSACSKVKDKDLCKRVHEYV-SECKTEPSLRLENALVNAYAACGEMDIAVRI 293
Query: 310 IRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365
R+M+ +VI W S + E +A Q P D +T++ D Y
Sbjct: 294 FRSMKAR-DVISWTSIVKGYVERGNLKLARTYFDQM-----PVRDRISWTIMIDGY 343
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 283 bits (723), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 149/402 (37%), Positives = 237/402 (58%), Gaps = 24/402 (5%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+ Q+ + + F+ +LKSC+ + + H+H+LK G YVAT L+ Y
Sbjct: 117 LYVQLLSSEINPNEFTFSSLLKSCSTKSGKLI----HTHVLKFGLGIDPYVATGLVDVYA 172
Query: 63 ----VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
V S A+K+FD +PER+ V+ MI Y+K GNV AR F+ M R++ SW+ M
Sbjct: 173 KGGDVVS---AQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVM 229
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I Y G + L LF+++++ PD++T+ A LS CS +G+ L G+ H F+
Sbjct: 230 IDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGA--LETGRWIHVFVKS 287
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ LN ++ T L+DMY+KCG L+ A++VF +++++W A+I G A GYS+DAL L
Sbjct: 288 SRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRL 347
Query: 239 FEMMQA-TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
F MQ TG++P ++TF G L AC H GLV+EG + F+ + +EY ++P+I+HYGC+V L
Sbjct: 348 FNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLL 407
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQF----DMAERVIKQALRMVKPEN 353
G+AG L+ AYE I+ M ++ + ++W S L +CK H F ++AE +I ++
Sbjct: 408 GRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIK------ 461
Query: 354 DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ G++ L+ ++Y +EG +VR LM + + K G S I
Sbjct: 462 NSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTI 503
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 81/186 (43%), Gaps = 27/186 (14%)
Query: 195 YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTF 254
YA G ++++L +F + ++ +TA I ++ G + A L+ + ++ + PNE TF
Sbjct: 74 YASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTF 133
Query: 255 TGVLTAC----------------------VHTGLVDEGRKYFKMIDEE--YDLEPR--IQ 288
+ +L +C V TGLVD K ++ + +D P +
Sbjct: 134 SSLLKSCSTKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLV 193
Query: 289 HYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348
M+ + K G +E A + +M E +++ W + +H + A + ++ L
Sbjct: 194 SSTAMITCYAKQGNVEAARALFDSM-CERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAE 252
Query: 349 VKPEND 354
KP+ D
Sbjct: 253 GKPKPD 258
>sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protein At1g05750,
chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2
SV=1
Length = 500
Score = 281 bits (720), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 149/398 (37%), Positives = 243/398 (61%), Gaps = 12/398 (3%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLT--VIHHLHSHILKLGFI-SHVYVATSLLHE 60
FS M V + + + +L C F + + + LH + KLG +HV V T+++
Sbjct: 59 FSDMTLAGVEPNHITFIALLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGM 118
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y F AR +FD + ++N+VTWNTMI GY +SG V A F++MP R++ SW+AMI
Sbjct: 119 YSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMI 178
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
++ G + L FREM G+ PD + I A L+ C++LG+ L G H +++
Sbjct: 179 NGFVKKGYQEEALLWFREM-QISGVKPDYVAIIAALNACTNLGA--LSFGLWVHRYVLSQ 235
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+++ N +++ L+D+Y +CG +++A VF ME+R V+SW ++I G A G + ++L F
Sbjct: 236 DFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYF 295
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MQ G KP+ +TFTG LTAC H GLV+EG +YF+++ +Y + PRI+HYGC+VDL+ +
Sbjct: 296 RKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSR 355
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH-KQFDMAERVIKQALRM-VKPENDGGV 357
AG LE+A +++++M ++PN ++ GS LAAC H +AER++K + VK ++
Sbjct: 356 AGRLEDALKLVQSMPMKPNEVVIGSLLAACSNHGNNIVLAERLMKHLTDLNVKSHSN--- 412
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++ ++Y + KWEGA ++R+ M ++K G S I
Sbjct: 413 YVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSI 450
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 56/144 (38%), Gaps = 14/144 (9%)
Query: 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275
+SWT+ I G +A F M GV+PN +TF +L+ C G G +
Sbjct: 36 TVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGC---GDFTSGSEALG 92
Query: 276 MIDEEYDLEPRIQHYGCMV-----DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330
+ Y + + MV ++ K G ++A V M + N + W + +
Sbjct: 93 DLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYME-DKNSVTWNTMIDGYM 151
Query: 331 EHKQFDMAERVIKQALRMVKPEND 354
Q D A ++ + PE D
Sbjct: 152 RSGQVDNAAKMFDKM-----PERD 170
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 280 bits (717), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 141/397 (35%), Positives = 236/397 (59%), Gaps = 7/397 (1%)
Query: 1 MQLFSQMHRQSVP-SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
++++ Q+ R+S D F+ + KSC + + +H H+ K G HV +L+
Sbjct: 93 IRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALID 152
Query: 60 EYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y+ A K+FDE+ ER+ ++WN+++ GY++ G + +A+ F M + + SW+AM
Sbjct: 153 MYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAM 212
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I+ Y G Y + FREM G+ PD++++ +VL C+ LGS L +GK H + +
Sbjct: 213 ISGYTGIGCYVEAMDFFREM-QLAGIEPDEISLISVLPSCAQLGS--LELGKWIHLYAER 269
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ + L++MY+KCG + A+ +F ME ++VISW+ +I G A+ G + A+
Sbjct: 270 RGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIET 329
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F MQ VKPN +TF G+L+AC H G+ EG +YF M+ ++Y +EP+I+HYGC++D+
Sbjct: 330 FNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLA 389
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
+AG LE A E+ +TM ++P+ IWGS L++C+ D+A V L ++PE D G +
Sbjct: 390 RAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVA-LVAMDHLVELEPE-DMGNY 447
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y KWE R+RK++ N+N++K G S+I
Sbjct: 448 VLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLI 484
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 123/284 (43%), Gaps = 36/284 (12%)
Query: 100 ARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCS 159
A F ++ NV ++++I AY + Y ++++++++ PD+ T + C+
Sbjct: 61 ATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCA 120
Query: 160 HLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDM------------------------- 194
LGS L GK HG + K + L+DM
Sbjct: 121 SLGSCYL--GKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISW 178
Query: 195 ------YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
YA+ G +K A +F LM ++ ++SWTA+I G G +A+ F MQ G++
Sbjct: 179 NSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIE 238
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+E++ VL +C G ++ G K+ + E + +++++ K G + +A +
Sbjct: 239 PDEISLISVLPSCAQLGSLELG-KWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQ 297
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-VKP 351
+ M + +VI W + ++ H A + R VKP
Sbjct: 298 LFGQMEGK-DVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKP 340
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 276 bits (705), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 150/426 (35%), Positives = 234/426 (54%), Gaps = 37/426 (8%)
Query: 3 LFSQMHRQS-VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+F +M R+ V DSFS ++K+ +F +L +H LK G SH++V T+L+ Y
Sbjct: 92 VFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMY 151
Query: 62 V-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
FARK+FDE+ + N V WN +I + +V AR+ F++M +RN SW+ M+A
Sbjct: 152 GGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLA 211
Query: 121 AYLNAGAYDPGLKLFREM------------------------------ISNEGLTPDQMT 150
Y+ AG + ++F EM + G++P++++
Sbjct: 212 GYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVS 271
Query: 151 IGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFEL 210
+ VLS CS GS GK HGF+ K + + L+DMY++CG + A +VFE
Sbjct: 272 LTGVLSACSQSGS--FEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEG 329
Query: 211 MEE-RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269
M+E R ++SWT++I G A G E+A+ LF M A GV P+ ++F +L AC H GL++E
Sbjct: 330 MQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEE 389
Query: 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAAC 329
G YF + Y +EP I+HYGCMVDL+G++G L++AY+ I M + P I+W + L AC
Sbjct: 390 GEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGAC 449
Query: 330 KEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKA 389
H ++AE+V KQ L + P N G + L+ + Y KW+ +RK M+ Q ++K
Sbjct: 450 SSHGNIELAEQV-KQRLNELDPNNSGDL-VLLSNAYATAGKWKDVASIRKSMIVQRIKKT 507
Query: 390 RGSSVI 395
S++
Sbjct: 508 TAWSLV 513
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/363 (23%), Positives = 153/363 (42%), Gaps = 48/363 (13%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT---SFGFARKLFDEL 76
L +L SC + LT IH L +K G + Y L+ ++ + +AR+L
Sbjct: 9 LSLLNSCKNLRALTQIHGL---FIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCF 65
Query: 77 PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA-----SWSAMIAAYLNAGAYDPG 131
PE +A +NT+++GYS+S + F M + S++ +I A N + G
Sbjct: 66 PEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTG 125
Query: 132 LKL------------------------------FREMISNEGLTPDQMTIGAVLSGCSHL 161
++ F + +E P+ + AV++ C
Sbjct: 126 FQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRG 185
Query: 162 GSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTA 221
V + +V+N N +++ Y K G L+ A +F M R+ +SW+
Sbjct: 186 NDVAGAR-EIFDKMLVRNHTSWN-----VMLAGYIKAGELESAKRIFSEMPHRDDVSWST 239
Query: 222 LICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY 281
+I G AH G ++ F +Q G+ PNE++ TGVL+AC +G + G+ + E+
Sbjct: 240 MIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFV-EKA 298
Query: 282 DLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERV 341
+ ++D++ + G + A V M+ + ++ W S +A H Q + A R+
Sbjct: 299 GYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRL 358
Query: 342 IKQ 344
+
Sbjct: 359 FNE 361
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 61/153 (39%), Gaps = 22/153 (14%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTH----------FNNLTVIHHLHSHILKLGFISH 50
++LF++M V D S + +L +C+H F+ + ++H+ I G +
Sbjct: 356 VRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVD 415
Query: 51 VYVATSLLHEYVVTSFGFARKLFDELP-ERNAVTWNTMIKGYSKSGNVCEARDFFER--- 106
+Y + L + A ++P A+ W T++ S GN+ A +R
Sbjct: 416 LYGRSGKLQK--------AYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNE 467
Query: 107 MPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI 139
+ N + AY AG + + + MI
Sbjct: 468 LDPNNSGDLVLLSNAYATAGKWKDVASIRKSMI 500
>sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g08510
OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1
Length = 511
Score = 275 bits (702), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 224/365 (61%), Gaps = 6/365 (1%)
Query: 38 LHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGN 96
LHS + GF S + T+L+ Y + + AR++FDE+ +R+ WN MI GY + G+
Sbjct: 104 LHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGD 163
Query: 97 VCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLS 156
+ A + F+ MP +NV SW+ +I+ + G Y LK+F M ++ + P+ +T+ +VL
Sbjct: 164 MKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLP 223
Query: 157 GCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFE-LMEERN 215
C++LG L +G+ G+ +N + N + ++MY+KCG + A +FE L +RN
Sbjct: 224 ACANLGE--LEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRN 281
Query: 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275
+ SW ++I A G ++AL+LF M G KP+ +TF G+L ACVH G+V +G++ FK
Sbjct: 282 LCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFK 341
Query: 276 MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQF 335
++E + + P+++HYGCM+DL G+ G L+EAY++I+TM ++P+ ++WG+ L AC H
Sbjct: 342 SMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHGNV 401
Query: 336 DMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++AE + +AL ++P N G ++ ++Y NEKW+G R+RKLM + + KA G S
Sbjct: 402 EIAE-IASEALFKLEPTNPGNC-VIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYSYF 459
Query: 396 SSLSV 400
+ V
Sbjct: 460 VEVGV 464
Score = 82.0 bits (201), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 74/317 (23%), Positives = 132/317 (41%), Gaps = 14/317 (4%)
Query: 35 IHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKS 94
I LH+H L+ G + LL ++ + +ARKLFD +N +I+ Y
Sbjct: 4 IKQLHAHCLRTGVDETKDLLQRLL---LIPNLVYARKLFDHHQNSCTFLYNKLIQAYYVH 60
Query: 95 GNVCEARDFFERMP---LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTI 151
E+ + + LR I A + + L+L G D
Sbjct: 61 HQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRLLHSQFFRSGFESDSFCC 120
Query: 152 GAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELM 211
+++ + LG+ L + + K + + ++ Y + G +K A+ +F+ M
Sbjct: 121 TTLITAYAKLGA--LCCARRVFDEMSKRDVP----VWNAMITGYQRRGDMKAAMELFDSM 174
Query: 212 EERNVISWTALICGSAHRGYSEDALSLFEMMQA-TGVKPNEMTFTGVLTACVHTGLVDEG 270
+NV SWT +I G + G +AL +F M+ VKPN +T VL AC + G ++ G
Sbjct: 175 PRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIG 234
Query: 271 RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330
R+ + E I ++++ K G ++ A + + + N+ W S + +
Sbjct: 235 RR-LEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLA 293
Query: 331 EHKQFDMAERVIKQALR 347
H + D A + Q LR
Sbjct: 294 THGKHDEALTLFAQMLR 310
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 84/175 (48%), Gaps = 12/175 (6%)
Query: 1 MQLFSQMHR-QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+++F M + +SV + +++ +L +C + L + L + + GF ++YV + +
Sbjct: 199 LKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIE 258
Query: 60 EYVVTS-FGFARKLFDEL-PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR-----NV 112
Y A++LF+EL +RN +WN+MI + G EA F +M LR +
Sbjct: 259 MYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQM-LREGEKPDA 317
Query: 113 ASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL 167
++ ++ A ++ G G +LF+ M ++P G ++ LG VG L
Sbjct: 318 VTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCMI---DLLGRVGKL 369
>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300
OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
Length = 548
Score = 274 bits (700), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 149/432 (34%), Positives = 246/432 (56%), Gaps = 43/432 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLL-- 58
+ L+++M ++ V D ++ +LK+C+ + H +++ GF+ + YV +L+
Sbjct: 97 VSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILF 156
Query: 59 --------------------HEYVVTSF--GFARK--------LFDELPERNAVTWNTMI 88
H+ +S G+A++ LFDE+P ++ V WN MI
Sbjct: 157 HANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYKDQVAWNVMI 216
Query: 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ 148
G K + AR+ F+R ++V +W+AMI+ Y+N G L +F+EM + G PD
Sbjct: 217 TGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEM-RDAGEHPDV 275
Query: 149 MTIGAVLSGCSHLGSVGLLMGKSAHGFI-----VKNEWELNEQIATILVDMYAKCGFLKY 203
+TI ++LS C+ LG L GK H +I V + + I L+DMYAKCG +
Sbjct: 276 VTILSLLSACAVLGD--LETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDR 333
Query: 204 ALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263
A+ VF +++R++ +W LI G A ++E ++ +FE MQ V PNE+TF GV+ AC H
Sbjct: 334 AIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPNEVTFIGVILACSH 392
Query: 264 TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWG 323
+G VDEGRKYF ++ + Y++EP I+HYGCMVD+ G+AG LEEA+ + +M++EPN I+W
Sbjct: 393 SGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWR 452
Query: 324 SFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383
+ L ACK + ++ + ++ L M K E+ G + L+ ++Y +W+G ++VRK+ +
Sbjct: 453 TLLGACKIYGNVELGKYANEKLLSMRKDES--GDYVLLSNIYASTGQWDGVQKVRKMFDD 510
Query: 384 QNVRKARGSSVI 395
V+K G S+I
Sbjct: 511 TRVKKPTGVSLI 522
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 146/317 (46%), Gaps = 49/317 (15%)
Query: 31 NLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG---FARKLFDELPERNAVTWNTM 87
N+ + +H+ ++ G +S++ V L++ ++ G +A KLFDE+P+ + N +
Sbjct: 24 NIRTLKQIHASMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNHV 83
Query: 88 IKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD 147
++G ++S P + V+ L+ EM G++PD
Sbjct: 84 LRGSAQSMK-----------PEKTVS--------------------LYTEM-EKRGVSPD 111
Query: 148 QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMV 207
+ T VL CS L G + HG +V++ + LNE + L+ +A CG L A +
Sbjct: 112 RYTFTFVLKACSKLEWRS--NGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASEL 169
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
F+ + + ++W+++ G A RG ++A+ LF+ M +++ + ++T C+ +
Sbjct: 170 FDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYK----DQVAWNVMITGCLKCKEM 225
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR---LEPNVIIWGS 324
D R+ F E+ + + M+ + G+ +EA + + MR P+V+ S
Sbjct: 226 DSARELFDRFTEK-----DVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILS 280
Query: 325 FLAACKEHKQFDMAERV 341
L+AC + +R+
Sbjct: 281 LLSACAVLGDLETGKRL 297
>sp|Q9FLS9|PP441_ARATH Pentatricopeptide repeat-containing protein At5g61800
OS=Arabidopsis thaliana GN=PCMP-E8 PE=2 SV=1
Length = 499
Score = 273 bits (697), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 141/404 (34%), Positives = 231/404 (57%), Gaps = 13/404 (3%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNN--LTVIHHLHSHILKLGFISHVYVATSLLH 59
+ F +M R+SVP D + + K+C N LT++ LH L+ G +S ++ +L+
Sbjct: 101 RFFVEMRRRSVPPDFHTFPFVFKACAAKKNGDLTLVKTLHCQALRFGLLSDLFTLNTLIR 160
Query: 60 EY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y ++ A +LFDE P+R+ VT+N +I G K+ + AR+ F+ MPLR++ SW+++
Sbjct: 161 VYSLIAPIDSALQLFDENPQRDVVTYNVLIDGLVKAREIVRARELFDSMPLRDLVSWNSL 220
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
I+ Y +KLF EM++ GL PD + I + LS C+ G GK+ H + +
Sbjct: 221 ISGYAQMNHCREAIKLFDEMVA-LGLKPDNVAIVSTLSACAQSGD--WQKGKAIHDYTKR 277
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
++ +AT LVD YAKCGF+ A+ +FEL ++ + +W A+I G A G E +
Sbjct: 278 KRLFIDSFLATGLVDFYAKCGFIDTAMEIFELCSDKTLFTWNAMITGLAMHGNGELTVDY 337
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F M ++G+KP+ +TF VL C H+GLVDE R F + YD+ ++HYGCM DL G
Sbjct: 338 FRKMVSSGIKPDGVTFISVLVGCSHSGLVDEARNLFDQMRSLYDVNREMKHYGCMADLLG 397
Query: 299 KAGFLEEAYEVIRTMRLE----PNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
+AG +EEA E+I M + ++ W L C+ H ++AE+ + ++ + PE D
Sbjct: 398 RAGLIEEAAEMIEQMPKDGGNREKLLAWSGLLGGCRIHGNIEIAEKAANR-VKALSPE-D 455
Query: 355 GGVFTLICDLYTMNEKWEGAERVRKLM-LNQNVRKARGSSVISS 397
GGV+ ++ ++Y E+WE +VR+++ ++ V+K G S + S
Sbjct: 456 GGVYKVMVEMYANAERWEEVVKVREIIDRDKKVKKNVGFSKVLS 499
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 271 bits (694), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 140/384 (36%), Positives = 223/384 (58%), Gaps = 8/384 (2%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLF 73
D+F+ +LK +++ +H ++ GF S V+V T L+ Y G ARK+F
Sbjct: 115 DTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMF 174
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP--LRNVASWSAMIAAYLNAGAYDPG 131
DE+ ++ WN ++ GY K G + EAR E MP +RN SW+ +I+ Y +G
Sbjct: 175 DEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEA 234
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
+++F+ M+ E + PD++T+ AVLS C+ LGS L +G+ ++ + +
Sbjct: 235 IEVFQRMLM-ENVEPDEVTLLAVLSACADLGS--LELGERICSYVDHRGMNRAVSLNNAV 291
Query: 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE 251
+DMYAK G + AL VFE + ERNV++WT +I G A G+ +AL++F M GV+PN+
Sbjct: 292 IDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPND 351
Query: 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR 311
+TF +L+AC H G VD G++ F + +Y + P I+HYGCM+DL G+AG L EA EVI+
Sbjct: 352 VTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIK 411
Query: 312 TMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKW 371
+M + N IWGS LAA H ++ ER + + +++ +P N G + L+ +LY+ +W
Sbjct: 412 SMPFKANAAIWGSLLAASNVHHDLELGERALSELIKL-EPNNSGN-YMLLANLYSNLGRW 469
Query: 372 EGAERVRKLMLNQNVRKARGSSVI 395
+ + +R +M V+K G S I
Sbjct: 470 DESRMMRNMMKGIGVKKMAGESSI 493
>sp|Q56X05|PPR15_ARATH Pentatricopeptide repeat-containing protein At1g06145
OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2
Length = 577
Score = 271 bits (693), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 149/428 (34%), Positives = 234/428 (54%), Gaps = 40/428 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L+ +M R SV S++ ++K+ + + L +HI K GF HV + T+L+
Sbjct: 111 LELYVRMLRDSVSPSSYTYSSLVKASSFASRFG--ESLQAHIWKFGFGFHVKIQTTLIDF 168
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTM-------------------------------I 88
Y T ARK+FDE+PER+ + W TM I
Sbjct: 169 YSATGRIREARKVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLI 228
Query: 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ 148
GY GN+ +A F +MP++++ SW+ MI Y Y + +F +M+ EG+ PD+
Sbjct: 229 NGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMME-EGIIPDE 287
Query: 149 MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVF 208
+T+ V+S C+HLG L +GK H + ++N + L+ I + LVDMY+KCG L+ AL+VF
Sbjct: 288 VTMSTVISACAHLGV--LEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVF 345
Query: 209 ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
+ ++N+ W ++I G A G++++AL +F M+ VKPN +TF V TAC H GLVD
Sbjct: 346 FNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVD 405
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
EGR+ ++ + ++Y + ++HYG MV LF KAG + EA E+I M EPN +IWG+ L
Sbjct: 406 EGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLDG 465
Query: 329 CKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRK 388
C+ HK +AE + L +++P N G F L+ +Y +W +R M + K
Sbjct: 466 CRIHKNLVIAEIAFNK-LMVLEPMNSGYYFLLV-SMYAEQNRWRDVAEIRGRMRELGIEK 523
Query: 389 -ARGSSVI 395
G+S I
Sbjct: 524 ICPGTSSI 531
Score = 32.7 bits (73), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 4/144 (2%)
Query: 201 LKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260
L A+ M+E NV + AL G + +L L+ M V P+ T++ ++ A
Sbjct: 76 LDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKA 135
Query: 261 CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVI 320
E + + + +IQ ++D + G + EA +V M E + I
Sbjct: 136 SSFASRFGESLQA-HIWKFGFGFHVKIQ--TTLIDFYSATGRIREARKVFDEMP-ERDDI 191
Query: 321 IWGSFLAACKEHKQFDMAERVIKQ 344
W + ++A + D A + Q
Sbjct: 192 AWTTMVSAYRRVLDMDSANSLANQ 215
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 268 bits (686), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 139/394 (35%), Positives = 238/394 (60%), Gaps = 6/394 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
++QM + + D+ + ++K+ + + V HS I++ GF + VYV SL+H Y
Sbjct: 104 FYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYA 163
Query: 63 VTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
F A ++F ++ R+ V+W +M+ GY K G V AR+ F+ MP RN+ +WS MI
Sbjct: 164 NCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMING 223
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
Y ++ + LF E + EG+ ++ + +V+S C+HLG+ L G+ A+ ++VK+
Sbjct: 224 YAKNNCFEKAIDLF-EFMKREGVVANETVMVSVISSCAHLGA--LEFGERAYEYVVKSHM 280
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
+N + T LVDM+ +CG ++ A+ VFE + E + +SW+++I G A G++ A+ F
Sbjct: 281 TVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQ 340
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M + G P ++TFT VL+AC H GLV++G + ++ + +++ +EPR++HYGC+VD+ G+AG
Sbjct: 341 MISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAG 400
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
L EA I M ++PN I G+ L ACK +K ++AERV ++ VKPE+ G + L+
Sbjct: 401 KLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIK-VKPEHS-GYYVLL 458
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++Y +W+ E +R +M + V+K G S+I
Sbjct: 459 SNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLI 492
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/368 (23%), Positives = 155/368 (42%), Gaps = 78/368 (21%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS--------FGFARK 71
L +L+SC+ F++L +I H +L+ IS V+VA+ LL V S G+A
Sbjct: 16 LALLQSCSSFSDLKII---HGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYG 72
Query: 72 LFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPG 131
+F ++ N +N +I+ +S +A F+ +M + W
Sbjct: 73 IFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRI--W---------------- 114
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
PD +T ++ S + V L+G+ H IV+ ++ + + L
Sbjct: 115 --------------PDNITFPFLIKASSEMECV--LVGEQTHSQIVRFGFQNDVYVENSL 158
Query: 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSA----------------HR------ 229
V MYA CGF+ A +F M R+V+SWT+++ G HR
Sbjct: 159 VHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWS 218
Query: 230 ----GYS-----EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE 280
GY+ E A+ LFE M+ GV NE V+++C H G ++ G + ++ + +
Sbjct: 219 IMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKS 278
Query: 281 YDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAER 340
+ + + +VD+F + G +E+A V + E + + W S + H A
Sbjct: 279 H-MTVNLILGTALVDMFWRCGDIEKAIHVFEGLP-ETDSLSWSSIIKGLAVHGHAHKAMH 336
Query: 341 VIKQALRM 348
Q + +
Sbjct: 337 YFSQMISL 344
>sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840
OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2
Length = 545
Score = 267 bits (683), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 146/421 (34%), Positives = 229/421 (54%), Gaps = 36/421 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F +M V D +S +LK+C F +H +K G ++ V+V +L++
Sbjct: 125 LTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNV 184
Query: 61 YVVTSF--------------------------------GFARKLFDELPERNAVTWNTMI 88
Y + + AR LFDE+ ERN +WN MI
Sbjct: 185 YGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDEMEERNVESWNFMI 244
Query: 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ 148
GY+ +G V EA++ F+ MP+R+V SW+AM+ AY + G Y+ L++F +M+ + PD
Sbjct: 245 SGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDG 304
Query: 149 MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVF 208
T+ +VLS C+ LGS L G+ H +I K+ E+ +AT LVDMY+KCG + AL VF
Sbjct: 305 FTLVSVLSACASLGS--LSQGEWVHVYIDKHGIEIEGFLATALVDMYSKCGKIDKALEVF 362
Query: 209 ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
+R+V +W ++I + G +DAL +F M G KPN +TF GVL+AC H G++D
Sbjct: 363 RATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNHVGMLD 422
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328
+ RK F+M+ Y +EP I+HYGCMVDL G+ G +EEA E++ + + I+ S L A
Sbjct: 423 QARKLFEMMSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELVNEIPADEASILLESLLGA 482
Query: 329 CKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRK 388
CK Q + AER+ + L + ++ G + + +LY + +WE R+ M + V +
Sbjct: 483 CKRFGQLEQAERIANRLLELNLRDSSG--YAQMSNLYASDGRWEKVIDGRRNMRAERVNR 540
Query: 389 A 389
+
Sbjct: 541 S 541
Score = 85.9 bits (211), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 94/410 (22%), Positives = 170/410 (41%), Gaps = 58/410 (14%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L + + + + S + + IL +LT I H+ +LK G + A+ L+
Sbjct: 21 LRLLQKENLKKMSVCSSTPVPILSFTERAKSLTEIQQAHAFMLKTGLFHDTFSASKLV-A 79
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ T+ PE V++ A R+ N + +++I
Sbjct: 80 FAATN-----------PEPKTVSY---------------AHSILNRIGSPNGFTHNSVIR 113
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
AY N+ + L +FREM+ + PD+ + VL C+ G G+ HG +K+
Sbjct: 114 AYANSSTPEVALTVFREMLLGP-VFPDKYSFTFVLKACAAF--CGFEEGRQIHGLFIKSG 170
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ + LV++Y + G+ + A V + M R+ +SW +L+ +G ++A +LF+
Sbjct: 171 LVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFD 230
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP--RIQHYGCMVDLFG 298
M+ V+ +G A GLV E ++ F D P + + MV +
Sbjct: 231 EMEERNVESWNFMISGYAAA----GLVKEAKEVF-------DSMPVRDVVSWNAMVTAYA 279
Query: 299 KAGFLEEAYEVIRTM----RLEPNVIIWGSFLAACKEHKQFDMAE----RVIKQALRMVK 350
G E EV M +P+ S L+AC E + K +
Sbjct: 280 HVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGI---- 335
Query: 351 PENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLSV 400
E +G + T + D+Y+ K + A V + ++V + +S+IS LSV
Sbjct: 336 -EIEGFLATALVDMYSKCGKIDKALEVFRATSKRDV--STWNSIISDLSV 382
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 267 bits (683), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 142/401 (35%), Positives = 231/401 (57%), Gaps = 46/401 (11%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFIS-HVYVATSLLH 59
M F +M + V ++ +++ +LK+ ++ +H L+ G + V++ +SL+
Sbjct: 189 MVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVD 248
Query: 60 EY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y + + A+K+FDE MP RNV +W+A+
Sbjct: 249 MYGKCSCYDDAQKVFDE-------------------------------MPSRNVVTWTAL 277
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
IA Y+ + +D G+ +F EM+ ++ + P++ T+ +VLS C+H+G+ L G+ H +++K
Sbjct: 278 IAGYVQSRCFDKGMLVFEEMLKSD-VAPNEKTLSSVLSACAHVGA--LHRGRRVHCYMIK 334
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
N E+N T L+D+Y KCG L+ A++VFE + E+NV +WTA+I G A GY+ DA L
Sbjct: 335 NSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDL 394
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F M ++ V PNE+TF VL+AC H GLV+EGR+ F + +++EP+ HY CMVDLFG
Sbjct: 395 FYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFG 454
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDM----AERVIKQALRMVKPEND 354
+ G LEEA +I M +EP ++WG+ +C HK +++ A RVIK ++P +
Sbjct: 455 RKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIK-----LQPSHS 509
Query: 355 GGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G +TL+ +LY+ ++ W+ RVRK M +Q V K+ G S I
Sbjct: 510 GR-YTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWI 549
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 124/250 (49%), Gaps = 8/250 (3%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
N++I GYS SG A F+ ++V +W+AMI ++ G+ + F EM G+
Sbjct: 142 NSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEM-KKTGV 200
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHG-FIVKNEWELNEQIATILVDMYAKCGFLKY 203
++MT+ +VL + V G+S HG ++ + + I + LVDMY KC
Sbjct: 201 AANEMTVVSVLKAAGKVEDVRF--GRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDD 258
Query: 204 ALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263
A VF+ M RNV++WTALI G + + +FE M + V PNE T + VL+AC H
Sbjct: 259 AQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAH 318
Query: 264 TGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
G + GR+ + MI +E ++DL+ K G LEEA V + E NV W
Sbjct: 319 VGALHRGRRVHCYMIKNS--IEINTTAGTTLIDLYVKCGCLEEAILVFERLH-EKNVYTW 375
Query: 323 GSFLAACKEH 332
+ + H
Sbjct: 376 TAMINGFAAH 385
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 110/250 (44%), Gaps = 7/250 (2%)
Query: 100 ARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKL--FREMISNEGLTPDQMTIGAVLSG 157
AR ++ ++ W ++I + + L +R M N G+ P + T +L
Sbjct: 55 ARRLLCQLQTLSIQLWDSLIGHFSGGITLNRRLSFLAYRHMRRN-GVIPSRHTFPPLLKA 113
Query: 158 CSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVI 217
L H IVK + + + L+ Y+ G +A +F+ E+++V+
Sbjct: 114 VFKLRDSNPF---QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVV 170
Query: 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI 277
+WTA+I G G + +A+ F M+ TGV NEMT VL A V GR +
Sbjct: 171 TWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLY 230
Query: 278 DEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDM 337
E ++ + +VD++GK ++A +V M NV+ W + +A + + FD
Sbjct: 231 LETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMP-SRNVVTWTALIAGYVQSRCFDK 289
Query: 338 AERVIKQALR 347
V ++ L+
Sbjct: 290 GMLVFEEMLK 299
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 266 bits (679), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 139/396 (35%), Positives = 231/396 (58%), Gaps = 6/396 (1%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+LF +M +V D + +I+ +C N+ ++ +++ ++ T+L+ Y
Sbjct: 198 KLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMY 257
Query: 62 V-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
AR+ F ++ RN M+ GYSK G + +A+ F++ +++ W+ MI+
Sbjct: 258 AGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMIS 317
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
AY+ + L++F EM + G+ PD +++ +V+S C++LG L K H I N
Sbjct: 318 AYVESDYPQEALRVFEEMCCS-GIKPDVVSMFSVISACANLGI--LDKAKWVHSCIHVNG 374
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
E I L++MYAKCG L VFE M RNV+SW+++I + G + DALSLF
Sbjct: 375 LESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFA 434
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ V+PNE+TF GVL C H+GLV+EG+K F + +EY++ P+++HYGCMVDLFG+A
Sbjct: 435 RMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRA 494
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
L EA EVI +M + NV+IWGS ++AC+ H + ++ + K+ L + +P++DG + L
Sbjct: 495 NLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILEL-EPDHDGAL-VL 552
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
+ ++Y ++WE +R++M +NV K +G S I
Sbjct: 553 MSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRID 588
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/352 (25%), Positives = 153/352 (43%), Gaps = 68/352 (19%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTS-FGFARKLF 73
D FS L ILK+ + + L LH K+ + +V T + Y +AR +F
Sbjct: 110 DQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVF 169
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
DE+ R+ VTWNTMI+ Y + G V EA FE M NV
Sbjct: 170 DEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNV--------------------- 208
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
PD+M + ++S C G+ + ++ + F+++N+ ++ + T LV
Sbjct: 209 -----------MPDEMILCNIVSACGRTGN--MRYNRAIYEFLIENDVRMDTHLLTALVT 255
Query: 194 MYA-------------------------------KCGFLKYALMVFELMEERNVISWTAL 222
MYA KCG L A ++F+ E+++++ WT +
Sbjct: 256 MYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTM 315
Query: 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD 282
I Y ++AL +FE M +G+KP+ ++ V++AC + G++D+ + I
Sbjct: 316 ISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVN-G 374
Query: 283 LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
LE + +++++ K G L+ +V M NV+ W S + A H +
Sbjct: 375 LESELSINNALINMYAKCGGLDATRDVFEKMP-RRNVVSWSSMINALSMHGE 425
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 100/212 (47%), Gaps = 4/212 (1%)
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
LF + I + G DQ + +L S + + L G HG K + + T +D
Sbjct: 97 LFYQRIRHVGGRLDQFSFLPILKAVSKVSA--LFEGMELHGVAFKIATLCDPFVETGFMD 154
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
MYA CG + YA VF+ M R+V++W +I G ++A LFE M+ + V P+EM
Sbjct: 155 MYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMI 214
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
+++AC TG + R ++ + E D+ +V ++ AG ++ A E R M
Sbjct: 215 LCNIVSACGRTGNMRYNRAIYEFLIEN-DVRMDTHLLTALVTMYAGAGCMDMAREFFRKM 273
Query: 314 RLEPNVIIWGSFLAACKEHKQFDMAERVIKQA 345
+ N+ + + ++ + + D A+ + Q
Sbjct: 274 SVR-NLFVSTAMVSGYSKCGRLDDAQVIFDQT 304
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 262 bits (670), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 145/400 (36%), Positives = 233/400 (58%), Gaps = 10/400 (2%)
Query: 1 MQLFSQMHRQSVPS-DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+ +FS+M R S+ S D F++ +L +C + L + +HSHI+ GF V +L+
Sbjct: 263 LDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALIS 322
Query: 60 EYV-VTSFGFARKLFDELPERNAVT--WNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
Y AR+L ++ ++ + ++ GY K G++ +A++ F + R+V +W+
Sbjct: 323 MYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWT 382
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
AMI Y G+Y + LFR M+ G P+ T+ A+LS L GK HG
Sbjct: 383 AMIVGYEQHGSYGEAINLFRSMVGG-GQRPNSYTLAAMLS--VASSLASLSHGKQIHGSA 439
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSEDA 235
VK+ + ++ L+ MYAK G + A F+L+ ER+ +SWT++I A G++E+A
Sbjct: 440 VKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEA 499
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
L LFE M G++P+ +T+ GV +AC H GLV++GR+YF M+ + + P + HY CMVD
Sbjct: 500 LELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVD 559
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
LFG+AG L+EA E I M +EP+V+ WGS L+AC+ HK D+ +V + L +++PEN G
Sbjct: 560 LFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLG-KVAAERLLLLEPENSG 618
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++ + +LY+ KWE A ++RK M + V+K +G S I
Sbjct: 619 A-YSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWI 657
Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/380 (25%), Positives = 178/380 (46%), Gaps = 69/380 (18%)
Query: 24 KSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGF-ARKLFDELPERNAV 82
KS N +H ++K G + VY+ +L++ Y T + ARKLFDE+P R A
Sbjct: 22 KSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAF 81
Query: 83 TWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNE 142
+WNT++ YSK G++ +FF+++P R+ SW+ MI Y N G Y +++ +M+ E
Sbjct: 82 SWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMV-KE 140
Query: 143 GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC---- 198
G+ P Q T+ VL+ + + + GK H FIVK N ++ L++MYAKC
Sbjct: 141 GIEPTQFTLTNVLASVA--ATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPM 198
Query: 199 ---------------------------GFLKYALMVFELMEERNVISWTALICGSAHRGY 231
G + A+ FE M ER++++W ++I G RGY
Sbjct: 199 MAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGY 258
Query: 232 SEDALSLF-EMMQATGVKPNEMTFTGVLTAC-----------VHTGLVDEG--------- 270
AL +F +M++ + + P+ T VL+AC +H+ +V G
Sbjct: 259 DLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLN 318
Query: 271 ------------RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPN 318
++I++ + +I+ + ++D + K G + +A + +++ + +
Sbjct: 319 ALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLK-DRD 377
Query: 319 VIIWGSFLAACKEHKQFDMA 338
V+ W + + ++H + A
Sbjct: 378 VVAWTAMIVGYEQHGSYGEA 397
Score = 132 bits (332), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 93/386 (24%), Positives = 183/386 (47%), Gaps = 43/386 (11%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+++ M ++ + F++ ++L S + +HS I+KLG +V V+ SLL+
Sbjct: 131 IRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNM 190
Query: 61 YVVTSFGF-ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A+ +FD + R+ +WN MI + + G + A FE+M R++ +W++MI
Sbjct: 191 YAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMI 250
Query: 120 AAYLNAGAYD-PGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
+ + N YD L +F +M+ + L+PD+ T+ +VLS C++L L +GK H IV
Sbjct: 251 SGF-NQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEK--LCIGKQIHSHIVT 307
Query: 179 NEWELNEQIATILVDMYAKC----------------------------GFLKYALM---- 206
++++ + L+ MY++C G++K M
Sbjct: 308 TGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAK 367
Query: 207 -VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG 265
+F +++R+V++WTA+I G G +A++LF M G +PN T +L+
Sbjct: 368 NIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLA 427
Query: 266 LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSF 325
+ G++ + ++ + ++ ++ KAG + A +R E + + W S
Sbjct: 428 SLSHGKQIHGSAVKSGEIYS-VSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSM 486
Query: 326 LAACKEH----KQFDMAERVIKQALR 347
+ A +H + ++ E ++ + LR
Sbjct: 487 IIALAQHGHAEEALELFETMLMEGLR 512
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 10/180 (5%)
Query: 195 YAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTF 254
Y+K G + F+ + +R+ +SWT +I G + G A+ + M G++P + T
Sbjct: 90 YSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTL 149
Query: 255 TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMR 314
T VL + T ++ G+K I + L + +++++ K G A V M
Sbjct: 150 TNVLASVAATRCMETGKKVHSFI-VKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMV 208
Query: 315 LEPNVIIWGSFLAACKEHKQFD--------MAERVIKQALRMVKPENDGGVFTLICDLYT 366
+ ++ W + +A + Q D MAER I M+ N G D+++
Sbjct: 209 VR-DISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFS 267
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 261 bits (668), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 124/329 (37%), Positives = 208/329 (63%), Gaps = 7/329 (2%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL--RNVASWSAMIAAYLNAG 126
A +LF+++PERN V+W+TM+ GYSK+G++ AR F++MPL +NV +W+ +IA Y G
Sbjct: 235 AFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKG 294
Query: 127 AYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ 186
+L +M+++ GL D + ++L+ C+ G + L G H + ++ N
Sbjct: 295 LLKEADRLVDQMVAS-GLKFDAAAVISILAACTESGLLSL--GMRIHSILKRSNLGSNAY 351
Query: 187 IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
+ L+DMYAKCG LK A VF + +++++SW ++ G G+ ++A+ LF M+ G
Sbjct: 352 VLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREG 411
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
++P+++TF VL +C H GL+DEG YF +++ YDL P+++HYGC+VDL G+ G L+EA
Sbjct: 412 IRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEA 471
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366
+V++TM +EPNV+IWG+ L AC+ H + D+A+ V+ +++ D G ++L+ ++Y
Sbjct: 472 IKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKL--DPCDPGNYSLLSNIYA 529
Query: 367 MNEKWEGAERVRKLMLNQNVRKARGSSVI 395
E WEG +R M + V K G+S +
Sbjct: 530 AAEDWEGVADIRSKMKSMGVEKPSGASSV 558
Score = 78.6 bits (192), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 105/226 (46%), Gaps = 39/226 (17%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+L QM + D+ +++ IL +CT L++ +HS + + S+ YV +LL Y
Sbjct: 301 RLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMY 360
Query: 62 V-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ A +F+++P+++ V+WNTM+ G G+ EA + F RM
Sbjct: 361 AKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRM------------- 407
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
EG+ PD++T AVL C+H GL+ + + ++
Sbjct: 408 -------------------RREGIRPDKVTFIAVLCSCNH---AGLIDEGIDYFYSMEKV 445
Query: 181 WELNEQIA--TILVDMYAKCGFLKYALMVFELME-ERNVISWTALI 223
++L Q+ LVD+ + G LK A+ V + M E NV+ W AL+
Sbjct: 446 YDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALL 491
>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3
SV=1
Length = 544
Score = 261 bits (667), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 139/397 (35%), Positives = 230/397 (57%), Gaps = 12/397 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+ +M SV D++ I +LK+C +L V +H+ +LKLGF S V ++
Sbjct: 112 VSLYHRMIHNSVLPDNYVITSVLKAC----DLKVCREIHAQVLKLGFGSSRSVGLKMMEI 167
Query: 61 YVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + A+K+FDE+P+R+ V MI YS+ G + EA + F+ + +++ W+AMI
Sbjct: 168 YGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMI 227
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ + L+LFREM E ++ ++ T VLS CS LG+ L +G+ H F+
Sbjct: 228 DGLVRNKEMNKALELFREM-QMENVSANEFTAVCVLSACSDLGA--LELGRWVHSFVENQ 284
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
EL+ + L++MY++CG + A VF +M +++VIS+ +I G A G S +A++ F
Sbjct: 285 RMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEF 344
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
M G +PN++T +L AC H GL+D G + F + +++EP+I+HYGC+VDL G+
Sbjct: 345 RDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGR 404
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN-DGGVF 358
G LEEAY I + +EP+ I+ G+ L+ACK H ++ E++ K R+ + EN D G +
Sbjct: 405 VGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELGEKIAK---RLFESENPDSGTY 461
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ +LY + KW+ + +R+ M + + K G S I
Sbjct: 462 VLLSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTI 498
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 134/287 (46%), Gaps = 28/287 (9%)
Query: 71 KLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDP 130
K+ +++A +I+ S +V A D F + NV ++AMI ++++G
Sbjct: 51 KIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSAD 110
Query: 131 GLKLFREMISNEGLTPDQMTIGAVLSGCS------------HLG-----SVGLLM----G 169
G+ L+ MI N L PD I +VL C LG SVGL M G
Sbjct: 111 GVSLYHRMIHNSVL-PDNYVITSVLKACDLKVCREIHAQVLKLGFGSSRSVGLKMMEIYG 169
Query: 170 KSAHGFIVKNEW----ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICG 225
KS K + + + AT++++ Y++CGF+K AL +F+ ++ ++ + WTA+I G
Sbjct: 170 KSGELVNAKKMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDG 229
Query: 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP 285
AL LF MQ V NE T VL+AC G ++ GR + E +E
Sbjct: 230 LVRNKEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFV-ENQRMEL 288
Query: 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
+++++ + G + EA V R MR + +VI + + ++ H
Sbjct: 289 SNFVGNALINMYSRCGDINEARRVFRVMR-DKDVISYNTMISGLAMH 334
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 112/259 (43%), Gaps = 43/259 (16%)
Query: 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY 195
R+ SN + T+ +VL C ++ V S H I++ ++Q A ++ ++
Sbjct: 17 RDPDSNTLRLSRRKTLISVLRSCKNIAHV-----PSIHAKIIRT---FHDQDAFVVFELI 68
Query: 196 AKCGFLK---YALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEM 252
C L YA VF + NV +TA+I G G S D +SL+ M V P+
Sbjct: 69 RVCSTLDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNY 128
Query: 253 TFTGVLTAC-------VHTGLVDEG----RKY-FKMID------------EEYDLEPRIQ 288
T VL AC +H ++ G R KM++ + +D P
Sbjct: 129 VITSVLKACDLKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRD 188
Query: 289 HYGC--MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQAL 346
H M++ + + GF++EA E+ + ++++ + + W + + +K+ + A +
Sbjct: 189 HVAATVMINCYSECGFIKEALELFQDVKIK-DTVCWTAMIDGLVRNKEMNKA----LELF 243
Query: 347 RMVKPEN-DGGVFTLICDL 364
R ++ EN FT +C L
Sbjct: 244 REMQMENVSANEFTAVCVL 262
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 260 bits (664), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 144/402 (35%), Positives = 227/402 (56%), Gaps = 11/402 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ ++ +M V D + +L S + +L + H+ IL G +V TSLL+
Sbjct: 47 ISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNM 106
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y A+++FD+ ++ WN+++ Y+K+G + +AR F+ MP RNV SWS +I
Sbjct: 107 YSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLI 166
Query: 120 AAYLNAGAYDPGLKLFREM---ISNEGLT-PDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
Y+ G Y L LFREM NE P++ T+ VLS C LG+ L GK H +
Sbjct: 167 NGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGA--LEQGKWVHAY 224
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFE-LMEERNVISWTALICGSAHRGYSED 234
I K E++ + T L+DMYAKCG L+ A VF L +++V +++A+IC A G +++
Sbjct: 225 IDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDE 284
Query: 235 ALSLF-EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293
LF EM + + PN +TF G+L ACVH GL++EG+ YFKM+ EE+ + P IQHYGCM
Sbjct: 285 CFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCM 344
Query: 294 VDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353
VDL+G++G ++EA I +M +EP+V+IWGS L+ + E +K+ + + P N
Sbjct: 345 VDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIEL-DPMN 403
Query: 354 DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G + L+ ++Y +W + +R M + + K G S +
Sbjct: 404 SGA-YVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYV 444
>sp|Q1PEU4|PP201_ARATH Pentatricopeptide repeat-containing protein At2g44880
OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2
Length = 555
Score = 258 bits (660), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 133/327 (40%), Positives = 202/327 (61%), Gaps = 6/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
AR+LFDE+ + +TW TMI GY ++ AR F+ MP RN+ SW+ MI Y
Sbjct: 195 ARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQP 254
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
G++LF+EM + L PD +TI +VL S G++ L G+ H F+ + + + ++
Sbjct: 255 QEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSL--GEWCHCFVQRKKLDKKVKVC 312
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
T ++DMY+KCG ++ A +F+ M E+ V SW A+I G A G + AL LF M K
Sbjct: 313 TAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEE-K 371
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+E+T V+TAC H GLV+EGRK+F ++ E L +I+HYGCMVDL G+AG L+EA +
Sbjct: 372 PDEITMLAVITACNHGGLVEEGRKWFHVM-REMGLNAKIEHYGCMVDLLGRAGSLKEAED 430
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+I M EPN II SFL+AC ++K + AER++K+A+ + +P+NDG + L+ +LY +
Sbjct: 431 LITNMPFEPNGIILSSFLSACGQYKDIERAERILKKAVEL-EPQNDGN-YVLLRNLYAAD 488
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
++W+ V+ +M +K G S+I
Sbjct: 489 KRWDDFGMVKNVMRKNQAKKEVGCSLI 515
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 115/257 (44%), Gaps = 14/257 (5%)
Query: 100 ARDFFERMPLRNVASWS-AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGC 158
AR F++ P R+ + S +MI AYL Y L+R++ PD T + C
Sbjct: 29 ARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLTKSC 88
Query: 159 SHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVIS 218
S S+ + G H I + + + ++T +VDMYAK G + A F+ M R+ +S
Sbjct: 89 SL--SMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVS 146
Query: 219 WTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMID 278
WTALI G G + A LF+ M + + + ++ V +G + R+ F +
Sbjct: 147 WTALISGYIRCGELDLASKLFDQMPHV---KDVVIYNAMMDGFVKSGDMTSARRLFDEMT 203
Query: 279 EEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
+ + + M+ + ++ A ++ M E N++ W + + ++KQ
Sbjct: 204 HK-----TVITWTTMIHGYCNIKDIDAARKLFDAMP-ERNLVSWNTMIGGYCQNKQPQEG 257
Query: 339 ERVIK--QALRMVKPEN 353
R+ + QA + P++
Sbjct: 258 IRLFQEMQATTSLDPDD 274
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 258 bits (659), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 129/327 (39%), Positives = 201/327 (61%), Gaps = 5/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A++LFD +P RN TWNTMI GY++ G + EA++ F++MP R+ SW+AMIA Y +G
Sbjct: 331 AKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHS 390
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L+LF +M EG ++ + + LS C+ + V L +GK HG +VK +E +
Sbjct: 391 FEALRLFVQM-EREGGRLNRSSFSSALSTCADV--VALELGKQLHGRLVKGGYETGCFVG 447
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+ MY KCG ++ A +F+ M ++++SW +I G + G+ E AL FE M+ G+K
Sbjct: 448 NALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLK 507
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P++ T VL+AC HTGLVD+GR+YF + ++Y + P QHY CMVDL G+AG LE+A+
Sbjct: 508 PDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHN 567
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+++ M EP+ IWG+ L A + H ++AE + M +PEN G++ L+ +LY +
Sbjct: 568 LMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAM-EPEN-SGMYVLLSNLYASS 625
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
+W ++R M ++ V+K G S I
Sbjct: 626 GRWGDVGKLRVRMRDKGVKKVPGYSWI 652
Score = 108 bits (270), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 124/263 (47%), Gaps = 21/263 (7%)
Query: 66 FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNA 125
F ARKLFDE+PER+ V+WN MIKGY ++ N+ +AR+ FE MP R+V SW+ M++ Y
Sbjct: 111 FELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQN 170
Query: 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE 185
G D +F M + ++ A+LS M ++ F + W L
Sbjct: 171 GCVDDARSVFDRMPEK-----NDVSWNALLSAYVQNSK----MEEACMLFKSRENWALVS 221
Query: 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245
L+ + K + A F+ M R+V+SW +I G A G ++A LF+
Sbjct: 222 W--NCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQ 279
Query: 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305
V T+T +++ + +V+E R+ F + E ++ + M+ + + +E
Sbjct: 280 DV----FTWTAMVSGYIQNRMVEEARELFDKMPERNEVS-----WNAMLAGYVQGERMEM 330
Query: 306 AYEVIRTMRLEPNVIIWGSFLAA 328
A E+ M NV W + +
Sbjct: 331 AKELFDVMPCR-NVSTWNTMITG 352
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 125/267 (46%), Gaps = 27/267 (10%)
Query: 65 SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLN 124
+ G AR+LF+ +PER+ +WNTM+ GY+++G V +AR F+RMP +N SW+A+++AY+
Sbjct: 141 NLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQ 200
Query: 125 AGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN 184
+ LF+ N L +G + + + + + N
Sbjct: 201 NSKMEEACMLFKSR-ENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWN----- 254
Query: 185 EQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQA 244
++ YA+ G + A +F+ ++V +WTA++ G E+A LF+ M
Sbjct: 255 -----TIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMP- 308
Query: 245 TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP--RIQHYGCMVDLFGKAGF 302
+ NE+++ +L V + +M E +D+ P + + M+ + + G
Sbjct: 309 ---ERNEVSWNAMLAGYVQG-------ERMEMAKELFDVMPCRNVSTWNTMITGYAQCGK 358
Query: 303 LEEAYEVIRTM-RLEPNVIIWGSFLAA 328
+ EA + M + +P + W + +A
Sbjct: 359 ISEAKNLFDKMPKRDP--VSWAAMIAG 383
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 121/276 (43%), Gaps = 25/276 (9%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A ++F +P ++V++N MI GY ++G AR F+ MP R++ SW+ MI Y+
Sbjct: 83 ALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNL 142
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
+LF M + + + M G +GC + E N+
Sbjct: 143 GKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARS-----------VFDRMPEKNDVSW 191
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+ Y + ++ A M+F+ E ++SW L+ G + +A F+ M V
Sbjct: 192 NALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDV- 250
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP--RIQHYGCMVDLFGKAGFLEEA 306
+++ ++T +G +DE R+ F D P + + MV + + +EEA
Sbjct: 251 ---VSWNTIITGYAQSGKIDEARQLF-------DESPVQDVFTWTAMVSGYIQNRMVEEA 300
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVI 342
E+ M E N + W + LA + ++ +MA+ +
Sbjct: 301 RELFDKM-PERNEVSWNAMLAGYVQGERMEMAKELF 335
Score = 79.0 bits (193), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 126/302 (41%), Gaps = 57/302 (18%)
Query: 84 WNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEG 143
WN I Y ++G EA F+RMP + S++ MI+ YL G ++ KLF EM
Sbjct: 67 WNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEM----- 121
Query: 144 LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKY 203
P++ + W +++ Y + L
Sbjct: 122 --PERDLVS----------------------------W-------NVMIKGYVRNRNLGK 144
Query: 204 ALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263
A +FE+M ER+V SW ++ G A G +DA S+F+ M + N++++ +L+A V
Sbjct: 145 ARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMP----EKNDVSWNALLSAYVQ 200
Query: 264 TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWG 323
++E FK E + L + C++ F K + EA + +M + +V+ W
Sbjct: 201 NSKMEEACMLFKS-RENWAL----VSWNCLLGGFVKKKKIVEARQFFDSMNVR-DVVSWN 254
Query: 324 SFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383
+ + + + D A ++ ++ P D +T + Y N E A + M
Sbjct: 255 TIITGYAQSGKIDEARQLFDES-----PVQDVFTWTAMVSGYIQNRMVEEARELFDKMPE 309
Query: 384 QN 385
+N
Sbjct: 310 RN 311
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 102/237 (43%), Gaps = 39/237 (16%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF QM R+ + S L +C L + LH ++K G+ + +V +LL
Sbjct: 394 LRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLM 453
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y S A LF E+ ++ V+WNTMI GYS+ G F + LR
Sbjct: 454 YCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHG--------FGEVALR--------- 496
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
F E + EGL PD T+ AVLS CSH GL+ + + +
Sbjct: 497 ---------------FFESMKREGLKPDDATMVAVLSACSH---TGLVDKGRQYFYTMTQ 538
Query: 180 EWEL--NEQIATILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSE 233
++ + N Q +VD+ + G L+ A + + M E + W L+ S G +E
Sbjct: 539 DYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTE 595
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 256 bits (655), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 132/385 (34%), Positives = 228/385 (59%), Gaps = 36/385 (9%)
Query: 12 VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARK 71
V D+ + ++K+ T ++ + +HS +++ GF S +YV SLLH Y
Sbjct: 117 VEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLY---------- 166
Query: 72 LFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPG 131
+ G+V A F++MP +++ +W+++I + G +
Sbjct: 167 --------------------ANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEA 206
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
L L+ EM +++G+ PD TI ++LS C+ +G+ L +GK H +++K N + +L
Sbjct: 207 LALYTEM-NSKGIKPDGFTIVSLLSACAKIGA--LTLGKRVHVYMIKVGLTRNLHSSNVL 263
Query: 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT-GVKPN 250
+D+YA+CG ++ A +F+ M ++N +SWT+LI G A G+ ++A+ LF+ M++T G+ P
Sbjct: 264 LDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPC 323
Query: 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI 310
E+TF G+L AC H G+V EG +YF+ + EEY +EPRI+H+GCMVDL +AG +++AYE I
Sbjct: 324 EITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYI 383
Query: 311 RTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEK 370
++M ++PNV+IW + L AC H D+AE Q L++ +P N G + L+ ++Y ++
Sbjct: 384 KSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQL-EP-NHSGDYVLLSNMYASEQR 441
Query: 371 WEGAERVRKLMLNQNVRKARGSSVI 395
W +++RK ML V+K G S++
Sbjct: 442 WSDVQKIRKQMLRDGVKKVPGHSLV 466
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 125/263 (47%), Gaps = 38/263 (14%)
Query: 68 FARKLFDELPER-NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAG 126
+A K+F ++ + N WNT+I+GY++ GN A
Sbjct: 71 YAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISA-------------------------- 104
Query: 127 AYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ 186
L+REM + + PD T ++ + + V L G++ H ++++ +
Sbjct: 105 -----FSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRL--GETIHSVVIRSGFGSLIY 157
Query: 187 IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
+ L+ +YA CG + A VF+ M E+++++W ++I G A G E+AL+L+ M + G
Sbjct: 158 VQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKG 217
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRK-YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305
+KP+ T +L+AC G + G++ + MI + L + ++DL+ + G +EE
Sbjct: 218 IKPDGFTIVSLLSACAKIGALTLGKRVHVYMI--KVGLTRNLHSSNVLLDLYARCGRVEE 275
Query: 306 AYEVIRTMRLEPNVIIWGSFLAA 328
A + M ++ N + W S +
Sbjct: 276 AKTLFDEM-VDKNSVSWTSLIVG 297
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 117/257 (45%), Gaps = 46/257 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ L+++M+ + + D F+I+ +L +C LT+ +H +++K+G
Sbjct: 207 LALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLT------------ 254
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
RN + N ++ Y++ G V EA+ F+ M +N SW+++I
Sbjct: 255 ------------------RNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIV 296
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF----I 176
G ++LF+ M S EGL P ++T +L CSH G V GF
Sbjct: 297 GLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMV-------KEGFEYFRR 349
Query: 177 VKNEWELNEQIATI--LVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSE 233
++ E+++ +I +VD+ A+ G +K A + M + NV+ W L+ G S+
Sbjct: 350 MREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSD 409
Query: 234 DALSLFEMMQATGVKPN 250
L+ F +Q ++PN
Sbjct: 410 --LAEFARIQILQLEPN 424
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 256 bits (655), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 133/396 (33%), Positives = 225/396 (56%), Gaps = 5/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++LF +M + V + +++ +L +C NL + S+I + ++ +A ++L
Sbjct: 217 LELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDM 276
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y S A++LFD + E++ VTW TM+ GY+ S + AR+ MP +++ +W+A+I
Sbjct: 277 YTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALI 336
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+AY G + L +F E+ + + +Q+T+ + LS C+ +G+ L +G+ H +I K+
Sbjct: 337 SAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGA--LELGRWIHSYIKKH 394
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+N + + L+ MY+KCG L+ + VF +E+R+V W+A+I G A G +A+ +F
Sbjct: 395 GIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMF 454
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
MQ VKPN +TFT V AC HTGLVDE F ++ Y + P +HY C+VD+ G+
Sbjct: 455 YKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGR 514
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
+G+LE+A + I M + P+ +WG+ L ACK H ++AE + L + +P NDG
Sbjct: 515 SGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLEL-EPRNDGA-HV 572
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y KWE +RK M ++K G S I
Sbjct: 573 LLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSI 608
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 103/402 (25%), Positives = 181/402 (45%), Gaps = 52/402 (12%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV 63
FS ++ + ++ + +++ C L H H+++ G S Y A+ L +
Sbjct: 18 FSNPNQPTTNNERSRHISLIERCVSLRQLK---QTHGHMIRTGTFSDPYSASKLFAMAAL 74
Query: 64 TSFG---FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+SF +ARK+FDE+ P N +W+ +I
Sbjct: 75 SSFASLEYARKVFDEI-------------------------------PKPNSFAWNTLIR 103
Query: 121 AYLNAGAYDPGLKL--FREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178
AY A DP L + F +M+S P++ T ++ + + S+ L G+S HG VK
Sbjct: 104 AY--ASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSL--GQSLHGMAVK 159
Query: 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238
+ + +A L+ Y CG L A VF ++E++V+SW ++I G +G + AL L
Sbjct: 160 SAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALEL 219
Query: 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298
F+ M++ VK + +T GVL+AC ++ GR+ I EE + + M+D++
Sbjct: 220 FKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYI-EENRVNVNLTLANAMLDMYT 278
Query: 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358
K G +E+A + M + NV W + L + ++ A V+ P+ D +
Sbjct: 279 KCGSIEDAKRLFDAMEEKDNV-TWTTMLDGYAISEDYEAAREVLNSM-----PQKDIVAW 332
Query: 359 TLICDLYTMNEKWEGAERV-RKLMLNQNVRKARGSSVISSLS 399
+ Y N K A V +L L +N+ K +++S+LS
Sbjct: 333 NALISAYEQNGKPNEALIVFHELQLQKNM-KLNQITLVSTLS 373
Score = 105 bits (262), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 81/351 (23%), Positives = 154/351 (43%), Gaps = 69/351 (19%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLF 73
+ ++ ++K+ ++L++ LH +K S V+VA SL+H Y A K+F
Sbjct: 130 NKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVF 189
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
+ E++ V+WN+MI G+ + G+ D L+
Sbjct: 190 TTIKEKDVVSWNSMINGF-------------------------------VQKGSPDKALE 218
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
LF++M S E + +T+ VLS C+ + + L G+ +I +N +N +A ++D
Sbjct: 219 LFKKMES-EDVKASHVTMVGVLSACAKIRN--LEFGRQVCSYIEENRVNVNLTLANAMLD 275
Query: 194 MYAKCGFLKYALMVFELMEE-------------------------------RNVISWTAL 222
MY KCG ++ A +F+ MEE +++++W AL
Sbjct: 276 MYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNAL 335
Query: 223 ICGSAHRGYSEDALSLFEMMQ-ATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY 281
I G +AL +F +Q +K N++T L+AC G ++ GR I +++
Sbjct: 336 ISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYI-KKH 394
Query: 282 DLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
+ ++ ++ K G LE++ EV ++ + +V +W + + H
Sbjct: 395 GIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE-KRDVFVWSAMIGGLAMH 444
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 256 bits (653), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 140/401 (34%), Positives = 215/401 (53%), Gaps = 9/401 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFI-SHVYVATSLLH 59
+ +F M V D ++ ++ +C + + V +H ++K + + + ++ + +
Sbjct: 238 LDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVD 297
Query: 60 EYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y S AR +FD +P RN + +MI GY+ + + AR F +M RNV SW+A+
Sbjct: 298 MYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNAL 357
Query: 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH----G 174
IA Y G + L LF ++ E + P + +L C+ L + L M H G
Sbjct: 358 IAGYTQNGENEEALSLFC-LLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHG 416
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
F ++ E + + L+DMY KCG ++ +VF M ER+ +SW A+I G A GY +
Sbjct: 417 FKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNE 476
Query: 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294
AL LF M +G KP+ +T GVL+AC H G V+EGR YF + ++ + P HY CMV
Sbjct: 477 ALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMV 536
Query: 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354
DL G+AGFLEEA +I M ++P+ +IWGS LAACK H+ + + V ++ L V+P N
Sbjct: 537 DLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLE-VEPSN- 594
Query: 355 GGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G + L+ ++Y KWE VRK M + V K G S I
Sbjct: 595 SGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWI 635
Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 168/318 (52%), Gaps = 8/318 (2%)
Query: 14 SDSFSILHILKSCTHFNNLTVIH--HLHSHILKLGFISHVYVATSLLHEYV-VTSFGFAR 70
+DS +L SC + L+ I+ ++H+ ++K GF + +++ L+ Y S R
Sbjct: 17 TDSSPFAKLLDSCIK-SKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGR 75
Query: 71 KLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDP 130
++FD++P+RN TWN+++ G +K G + EA F MP R+ +W++M++ + +
Sbjct: 76 QVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEE 135
Query: 131 GLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATI 190
L F M+ EG ++ + +VLS CS L + G H I K+ + + I +
Sbjct: 136 ALCYF-AMMHKEGFVLNEYSFASVLSACSGLNDMN--KGVQVHSLIAKSPFLSDVYIGSA 192
Query: 191 LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250
LVDMY+KCG + A VF+ M +RNV+SW +LI G + +AL +F+MM + V+P+
Sbjct: 193 LVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPD 252
Query: 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI 310
E+T V++AC + G++ + + L I VD++ K ++EA +
Sbjct: 253 EVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIF 312
Query: 311 RTMRLEPNVIIWGSFLAA 328
+M + NVI S ++
Sbjct: 313 DSMPIR-NVIAETSMISG 329
Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/364 (27%), Positives = 170/364 (46%), Gaps = 79/364 (21%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV- 62
F+ MH++ + +S +L +C+ N++ +HS I K F+S VY+ ++L+ Y
Sbjct: 140 FAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSK 199
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
+ A+++FDE+ +RN V+WN++I + ++G EA D F
Sbjct: 200 CGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVF------------------ 241
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+M+ + PD++T+ +V+S C+ L ++ + G+ HG +VKN+
Sbjct: 242 --------------QMMLESRVEPDEVTLASVISACASLSAIKV--GQEVHGRVVKNDKL 285
Query: 183 LNEQI-ATILVDMYAKCGFLKYALMVFELME----------------------------- 212
N+ I + VDMYAKC +K A +F+ M
Sbjct: 286 RNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTK 345
Query: 213 --ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC-----VHTG 265
ERNV+SW ALI G G +E+ALSLF +++ V P +F +L AC +H G
Sbjct: 346 MAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLG 405
Query: 266 L---VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
+ V + FK E D I ++D++ K G +EE Y V R M +E + + W
Sbjct: 406 MQAHVHVLKHGFKFQSGEED---DIFVGNSLIDMYVKCGCVEEGYLVFRKM-MERDCVSW 461
Query: 323 GSFL 326
+ +
Sbjct: 462 NAMI 465
>sp|O80488|PPR23_ARATH Pentatricopeptide repeat-containing protein At1g09190
OS=Arabidopsis thaliana GN=PCMP-E70 PE=2 SV=1
Length = 484
Score = 254 bits (648), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 146/405 (36%), Positives = 221/405 (54%), Gaps = 12/405 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ FS M + + +D ++ +LKSC+ ++L +H +++ GF + ++
Sbjct: 87 LSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFGKCVHGELIRTGFHRLGKIRIGVVEL 146
Query: 61 YVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y G A+K+FDE+ ERN V WN MI+G+ SG+V F++M R++ SW++MI
Sbjct: 147 YTSGGRMGDAQKVFDEMSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMI 206
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
++ G L+LF EMI ++G PD+ T+ VL + LG L GK H
Sbjct: 207 SSLSKCGRDREALELFCEMI-DQGFDPDEATVVTVLPISASLGV--LDTGKWIHS--TAE 261
Query: 180 EWELNEQIATI---LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
L + T+ LVD Y K G L+ A +F M+ RNV+SW LI GSA G E +
Sbjct: 262 SSGLFKDFITVGNALVDFYCKSGDLEAATAIFRKMQRRNVVSWNTLISGSAVNGKGEFGI 321
Query: 237 SLFEMMQATG-VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
LF+ M G V PNE TF GVL C +TG V+ G + F ++ E + LE R +HYG MVD
Sbjct: 322 DLFDAMIEEGKVAPNEATFLGVLACCSYTGQVERGEELFGLMMERFKLEARTEHYGAMVD 381
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
L ++G + EA++ ++ M + N +WGS L+AC+ H +AE V L ++P N G
Sbjct: 382 LMSRSGRITEAFKFLKNMPVNANAAMWGSLLSACRSHGDVKLAE-VAAMELVKIEPGNSG 440
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLSV 400
+ L+ +LY +W+ E+VR LM +RK+ G S I +SV
Sbjct: 441 N-YVLLSNLYAEEGRWQDVEKVRTLMKKNRLRKSTGQSTICDVSV 484
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 90/371 (24%), Positives = 161/371 (43%), Gaps = 23/371 (6%)
Query: 30 NNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFG------FARKLFDELPERNAVT 83
N T + +H+H+L+ H ++LL + ++ G +A ++F + N +
Sbjct: 15 NTRTRLPEIHAHLLR-----HFLHGSNLLLAHFISICGSLSNSDYANRVFSHIQNPNVLV 69
Query: 84 WNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEG 143
+N MIK YS G E+ FF M R + + A L + + L+ F + + E
Sbjct: 70 FNAMIKCYSLVGPPLESLSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLR-FGKCVHGEL 128
Query: 144 LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKY 203
+ +G + G L + G MG + F E N + +++ + G ++
Sbjct: 129 IRTGFHRLGKIRIGVVELYTSGGRMGDAQKVF--DEMSERNVVVWNLMIRGFCDSGDVER 186
Query: 204 ALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263
L +F+ M ER+++SW ++I + G +AL LF M G P+E T VL
Sbjct: 187 GLHLFKQMSERSIVSWNSMISSLSKCGRDREALELFCEMIDQGFDPDEATVVTVLPISAS 246
Query: 264 TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWG 323
G++D G+ + + I +VD + K+G LE A + R M+ NV+ W
Sbjct: 247 LGVLDTGKWIHSTAESSGLFKDFITVGNALVDFYCKSGDLEAATAIFRKMQ-RRNVVSWN 305
Query: 324 SFLAAC----KEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRK 379
+ ++ K D+ + +I++ V P + L C YT + E E +
Sbjct: 306 TLISGSAVNGKGEFGIDLFDAMIEEG--KVAPNEATFLGVLACCSYT--GQVERGEELFG 361
Query: 380 LMLNQNVRKAR 390
LM+ + +AR
Sbjct: 362 LMMERFKLEAR 372
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 251 bits (641), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 133/394 (33%), Positives = 218/394 (55%), Gaps = 6/394 (1%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
++ M + V D +++ ++ SC+ +L + ++ + G + + +L+ +
Sbjct: 244 VYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFS 303
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
AR++FD L +R V+W TMI GY++ G + +R F+ M ++V W+AMI
Sbjct: 304 KCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGG 363
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181
+ A L LF+EM PD++T+ LS CS LG+ L +G H +I K
Sbjct: 364 SVQAKRGQDALALFQEM-QTSNTKPDEITMIHCLSACSQLGA--LDVGIWIHRYIEKYSL 420
Query: 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEM 241
LN + T LVDMYAKCG + AL VF ++ RN +++TA+I G A G + A+S F
Sbjct: 421 SLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNE 480
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M G+ P+E+TF G+L+AC H G++ GR YF + ++L P+++HY MVDL G+AG
Sbjct: 481 MIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAG 540
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361
LEEA ++ +M +E + +WG+ L C+ H ++ E+ K+ L + +D G++ L+
Sbjct: 541 LLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLEL--DPSDSGIYVLL 598
Query: 362 CDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+Y WE A+R R++M + V K G S I
Sbjct: 599 DGMYGEANMWEDAKRARRMMNERGVEKIPGCSSI 632
Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 156/345 (45%), Gaps = 76/345 (22%)
Query: 3 LFSQMHR----QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGF--ISHVYVATS 56
L+ QM R +S P D F+ + K C ++ H + H+LKL +SHV+ A+
Sbjct: 140 LYKQMLRHGCCESRP-DHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHNAS- 197
Query: 57 LLHEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASW 115
+H + ARK+FDE P R+ V+WN +I GY K G +A
Sbjct: 198 -IHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKA--------------- 241
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
I Y +++ +EG+ PD +T+ ++S CS LG + GK + +
Sbjct: 242 ---IYVY--------------KLMESEGVKPDDVTMIGLVSSCSMLGDLN--RGKEFYEY 282
Query: 176 IVKNEWELNEQIATILVDM-------------------------------YAKCGFLKYA 204
+ +N + + L+DM YA+CG L +
Sbjct: 283 VKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVS 342
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
+F+ MEE++V+ W A+I GS +DAL+LF+ MQ + KP+E+T L+AC
Sbjct: 343 RKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQL 402
Query: 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEV 309
G +D G + I E+Y L + +VD++ K G + EA V
Sbjct: 403 GALDVGIWIHRYI-EKYSLSLNVALGTSLVDMYAKCGNISEALSV 446
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 127/274 (46%), Gaps = 33/274 (12%)
Query: 68 FARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127
++ K+ + N +WN I+G+S+S N E+ +++M LR+ S
Sbjct: 105 YSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQM-LRHGCCES----------- 152
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
PD T + C+ L L G G ++K EL +
Sbjct: 153 -----------------RPDHFTYPVLFKVCADLRLSSL--GHMILGHVLKLRLELVSHV 193
Query: 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247
+ M+A CG ++ A VF+ R+++SW LI G G +E A+ ++++M++ GV
Sbjct: 194 HNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGV 253
Query: 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307
KP+++T G++++C G ++ G+++++ + E L I ++D+F K G + EA
Sbjct: 254 KPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKEN-GLRMTIPLVNALMDMFSKCGDIHEAR 312
Query: 308 EVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERV 341
+ + + ++ W + ++ D++ ++
Sbjct: 313 RIFDNLE-KRTIVSWTTMISGYARCGLLDVSRKL 345
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 101/236 (42%), Gaps = 37/236 (15%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF +M + D +++H L +C+ L V +H +I K +V + TSL
Sbjct: 374 LALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSL--- 430
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ Y+K GN+ EA F + RN +++A+I
Sbjct: 431 ---------------------------VDMYAKCGNISEALSVFHGIQTRNSLTYTAIIG 463
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
G + F EMI + G+ PD++T +LS C H G++ + +K+
Sbjct: 464 GLALHGDASTAISYFNEMI-DAGIAPDEITFIGLLSACCH---GGMIQTGRDYFSQMKSR 519
Query: 181 WELNEQIA--TILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSE 233
+ LN Q+ +I+VD+ + G L+ A + E M E + W AL+ G G E
Sbjct: 520 FNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVE 575
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 251 bits (641), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 139/409 (33%), Positives = 225/409 (55%), Gaps = 20/409 (4%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+ M + V + F+ +LK+C + +H LK GF +V ++L+ YV
Sbjct: 115 FYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYV 174
Query: 63 VTSF-GFARKLF-DELPERNAVT-------------WNTMIKGYSKSGNVCEARDFFERM 107
+ F AR LF + E++ V WN MI GY + G+ AR F++M
Sbjct: 175 MCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKM 234
Query: 108 PLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL 167
R+V SW+ MI+ Y G + +++FREM + + P+ +T+ +VL S LGS L
Sbjct: 235 RQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGD-IRPNYVTLVSVLPAISRLGS--LE 291
Query: 168 MGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSA 227
+G+ H + + +++ + + L+DMY+KCG ++ A+ VFE + NVI+W+A+I G A
Sbjct: 292 LGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFA 351
Query: 228 HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRI 287
G + DA+ F M+ GV+P+++ + +LTAC H GLV+EGR+YF + LEPRI
Sbjct: 352 IHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRI 411
Query: 288 QHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALR 347
+HYGCMVDL G++G L+EA E I M ++P+ +IW + L AC+ +M +RV +
Sbjct: 412 EHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMD 471
Query: 348 MVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
MV +D G + + ++Y W +R M +++RK G S+I
Sbjct: 472 MVP--HDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLID 518
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 143/328 (43%), Gaps = 81/328 (24%)
Query: 52 YVATSLLHEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRN 111
+ ATS LH +A K+F+++P+RN +WNT+I+G+S+S
Sbjct: 64 FCATSDLHH---RDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDED-------------- 106
Query: 112 VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKS 171
A+IA + LF EM+S+E + P++ T +VL C+ G + GK
Sbjct: 107 ----KALIA-----------ITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQ--EGKQ 149
Query: 172 AHGFIVKNEWELNEQIATILVDMYAKCGFL------------------------------ 201
HG +K + +E + + LV MY CGF+
Sbjct: 150 IHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIV 209
Query: 202 ---------------KYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATG 246
K A M+F+ M +R+V+SW +I G + G+ +DA+ +F M+
Sbjct: 210 LWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGD 269
Query: 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
++PN +T VL A G ++ G ++ + E+ + ++D++ K G +E+A
Sbjct: 270 IRPNYVTLVSVLPAISRLGSLELG-EWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKA 328
Query: 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
V + E NVI W + + H Q
Sbjct: 329 IHVFERLPRE-NVITWSAMINGFAIHGQ 355
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 250 bits (638), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 135/396 (34%), Positives = 227/396 (57%), Gaps = 5/396 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F+ M V D S+L + SC+ N+ H ++L+ GF S + +L+
Sbjct: 322 LGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDM 381
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y+ A ++FD + + VTWN+++ GY ++G V A + FE MP +N+ SW+ +I
Sbjct: 382 YMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTII 441
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ + ++ +++F M S EG+ D +T+ ++ S C HLG++ L K + +I KN
Sbjct: 442 SGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDL--AKWIYYYIEKN 499
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+L+ ++ T LVDM+++CG + A+ +F + R+V +WTA I A G +E A+ LF
Sbjct: 500 GIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELF 559
Query: 240 EMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299
+ M G+KP+ + F G LTAC H GLV +G++ F + + + + P HYGCMVDL G+
Sbjct: 560 DDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGR 619
Query: 300 AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359
AG LEEA ++I M +EPN +IW S LAAC+ +MA ++ ++++ PE G +
Sbjct: 620 AGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEK-IQVLAPERTGS-YV 677
Query: 360 LICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
L+ ++Y +W +VR M + +RK G+S I
Sbjct: 678 LLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSI 713
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/336 (23%), Positives = 144/336 (42%), Gaps = 34/336 (10%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF +M + D ++ L +C +H I+K+G+ ++V SL+H
Sbjct: 121 LFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVH--- 177
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
Y++ G + AR F+ M RNV SW++MI Y
Sbjct: 178 ---------------------------FYAECGELDSARKVFDEMSERNVVSWTSMICGY 210
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+ LF M+ +E +TP+ +T+ V+S C+ L L G+ + FI + E
Sbjct: 211 ARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLED--LETGEKVYAFIRNSGIE 268
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
+N+ + + LVDMY KC + A +F+ N+ A+ +G + +AL +F +M
Sbjct: 269 VNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLM 328
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
+GV+P+ ++ +++C + G+ + E ++D++ K
Sbjct: 329 MDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRN-GFESWDNICNALIDMYMKCHR 387
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
+ A+ + M V+ W S +A E+ + D A
Sbjct: 388 QDTAFRIFDRMS-NKTVVTWNSIVAGYVENGEVDAA 422
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 131/290 (45%), Gaps = 44/290 (15%)
Query: 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY----VVTSFGFARKLFDELPE 78
LK+C + L + H + K G + V T L+ S FA+++F+
Sbjct: 39 LKNCKTIDELKMFHR---SLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSES 95
Query: 79 RNAV-TWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
+N++I+GY+ SG EA + LF
Sbjct: 96 YGTCFMYNSLIRGYASSGLCNEA-------------------------------ILLFLR 124
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
M+ N G++PD+ T LS C+ + G G HG IVK + + + LV YA+
Sbjct: 125 MM-NSGISPDKYTFPFGLSACAKSRAKG--NGIQIHGLIVKMGYAKDLFVQNSLVHFYAE 181
Query: 198 CGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL-FEMMQATGVKPNEMTFTG 256
CG L A VF+ M ERNV+SWT++ICG A R +++DA+ L F M++ V PN +T
Sbjct: 182 CGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVC 241
Query: 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306
V++AC ++ G K + I +E +VD++ K ++ A
Sbjct: 242 VISACAKLEDLETGEKVYAFI-RNSGIEVNDLMVSALVDMYMKCNAIDVA 290
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 106/259 (40%), Gaps = 43/259 (16%)
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
LK+F ++ +GL D TI +++ LG+ + + F K +E +E T
Sbjct: 48 LKMFHRSLTKQGLDNDVSTITKLVARSCELGT------RESLSF-AKEVFENSESYGTCF 100
Query: 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE 251
+ + +LI G A G +A+ LF M +G+ P++
Sbjct: 101 M--------------------------YNSLIRGYASSGLCNEAILLFLRMMNSGISPDK 134
Query: 252 MTFTGVLTACVHTGLVDEGRKYFKMIDE-EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI 310
TF L+AC + G + +I + Y + +Q+ +V + + G L+ A +V
Sbjct: 135 YTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQN--SLVHFYAECGELDSARKVF 192
Query: 311 RTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN-DGGVFTLICDLYTMN- 368
M E NV+ W S + + + D A+ + RMV+ E T++C +
Sbjct: 193 DEMS-ERNVVSWTSMICG---YARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAK 248
Query: 369 -EKWEGAERVRKLMLNQNV 386
E E E+V + N +
Sbjct: 249 LEDLETGEKVYAFIRNSGI 267
Score = 35.8 bits (81), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 23/174 (13%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTH----------FNNLTVIHHLHSHILKLGFISH 50
++LF M Q + D + + L +C+H F ++ +H + + G +
Sbjct: 556 IELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVD 615
Query: 51 VYVATSLLHEYVVTSFGFARKLFDELP-ERNAVTWNTMIKGYSKSGNVCEARDFFERMPL 109
+ LL E V +L +++P E N V WN+++ GNV A E++ +
Sbjct: 616 LLGRAGLLEEAV--------QLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQV 667
Query: 110 ---RNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSH 160
S+ + Y +AG ++ K+ R + +GL T + G +H
Sbjct: 668 LAPERTGSYVLLSNVYASAGRWNDMAKV-RLSMKEKGLRKPPGTSSIQIRGKTH 720
>sp|P0C8Q7|PP369_ARATH Pentatricopeptide repeat-containing protein At5g08305
OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1
Length = 534
Score = 250 bits (638), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 134/400 (33%), Positives = 233/400 (58%), Gaps = 12/400 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ ++ QM R + D + ++KS + +N + LH ++K G +++ +L+H
Sbjct: 93 ISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHM 152
Query: 61 YVVTSF---GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
Y SF ARKLFDE+P +N VTWN+++ Y+KSG+V AR F+ M R+V +WS+
Sbjct: 153 Y--GSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSS 210
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
MI Y+ G Y+ L++F +M+ +++T+ +V+ C+HLG++ GK+ H +I+
Sbjct: 211 MIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALN--RGKTVHRYIL 268
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVF--ELMEERNVISWTALICGSAHRGYSEDA 235
L + T L+DMYAKCG + A VF ++E + + W A+I G A G+ ++
Sbjct: 269 DVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRES 328
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
L LF M+ + + P+E+TF +L AC H GLV E +FK + +E EP+ +HY CMVD
Sbjct: 329 LQLFHKMRESKIDPDEITFLCLLAACSHGGLVKEAWHFFKSL-KESGAEPKSEHYACMVD 387
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
+ +AG +++A++ I M ++P + G+ L C H ++AE V K+ + + +P NDG
Sbjct: 388 VLSRAGLVKDAHDFISEMPIKPTGSMLGALLNGCINHGNLELAETVGKKLIEL-QPHNDG 446
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ + ++Y +N+++ A +R+ M + V+K G S++
Sbjct: 447 R-YVGLANVYAINKQFRAARSMREAMEKKGVKKIAGHSIL 485
>sp|Q9LR72|PPR7_ARATH Putative pentatricopeptide repeat-containing protein At1g03510
OS=Arabidopsis thaliana GN=PCMP-E3 PE=3 SV=1
Length = 429
Score = 250 bits (638), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 144/398 (36%), Positives = 226/398 (56%), Gaps = 11/398 (2%)
Query: 1 MQLFSQMHRQ-SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+ LF QMH ++P D+ LKSC + +H+H +K F+S+ +V +LL
Sbjct: 32 LNLFLQMHSSFALPLDAHVFSLALKSCAAAFRPVLGGSVHAHSVKSNFLSNPFVGCALLD 91
Query: 60 EY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP-LRNVASWSA 117
Y S ARKLFDE+P+RNAV WN MI Y+ G V EA + +E M + N +S++A
Sbjct: 92 MYGKCLSVSHARKLFDEIPQRNAVVWNAMISHYTHCGKVKEAVELYEAMDVMPNESSFNA 151
Query: 118 MIAAYLNA--GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
+I + G+Y ++ +R+MI P+ +T+ A++S CS +G+ L+ K H +
Sbjct: 152 IIKGLVGTEDGSYR-AIEFYRKMIEFR-FKPNLITLLALVSACSAIGAFRLI--KEIHSY 207
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
+N E + Q+ + LV+ Y +CG + Y +VF+ ME+R+V++W++LI A G +E A
Sbjct: 208 AFRNLIEPHPQLKSGLVEAYGRCGSIVYVQLVFDSMEDRDVVAWSSLISAYALHGDAESA 267
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
L F+ M+ V P+++ F VL AC H GL DE YFK + +Y L HY C+VD
Sbjct: 268 LKTFQEMELAKVTPDDIAFLNVLKACSHAGLADEALVYFKRMQGDYGLRASKDHYSCLVD 327
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
+ + G EEAY+VI+ M +P WG+ L AC+ + + ++AE + + L MV+PEN
Sbjct: 328 VLSRVGRFEEAYKVIQAMPEKPTAKTWGALLGACRNYGEIELAE-IAARELLMVEPENPA 386
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
+ L+ +Y + E AER+R M V+ + GSS
Sbjct: 387 N-YVLLGKIYMSVGRQEEAERLRLKMKESGVKVSPGSS 423
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 249 bits (637), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 130/397 (32%), Positives = 226/397 (56%), Gaps = 9/397 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ ++ M ++ + SF+ +LK+C +L + H+ +L VYV +++
Sbjct: 134 IAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDM 193
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
YV S ARK+FDE+PER+ ++W +I Y++ GN+ A + FE +P +++ +W+AM+
Sbjct: 194 YVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMV 253
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
+ L+ F M G+ D++T+ +S C+ LG+ A K+
Sbjct: 254 TGFAQNAKPQEALEYFDRM-EKSGIRADEVTVAGYISACAQLGASKY--ADRAVQIAQKS 310
Query: 180 EWELNEQ--IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
+ ++ I + L+DMY+KCG ++ A+ VF M +NV +++++I G A G +++AL
Sbjct: 311 GYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALH 370
Query: 238 LFE-MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
LF M+ T +KPN +TF G L AC H+GLVD+GR+ F + + + ++P HY CMVDL
Sbjct: 371 LFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDL 430
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
G+ G L+EA E+I+TM +EP+ +WG+ L AC+ H ++AE + + L ++P+ G
Sbjct: 431 LGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAE-IAAEHLFELEPDIIGN 489
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393
+ L+ ++Y W G RVRKL+ + ++K S
Sbjct: 490 -YILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVS 525
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 134/347 (38%), Gaps = 67/347 (19%)
Query: 18 SILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELP 77
S++ L C NL I +H H+L+ G Y+ T L+ +T G +
Sbjct: 51 SLISKLDDCI---NLNQIKQIHGHVLRKGLDQSCYILTKLIR--TLTKLGVPMDPY---- 101
Query: 78 ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
AR E + RN W+A+I Y G +D + ++
Sbjct: 102 ----------------------ARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGC 139
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
M E +TP T A+L C + + L G+ H + + ++DMY K
Sbjct: 140 M-RKEEITPVSFTFSALLKACGTMKDLNL--GRQFHAQTFRLRGFCFVYVGNTMIDMYVK 196
Query: 198 CGFLKYALMVFELMEERNVIS-------------------------------WTALICGS 226
C + A VF+ M ER+VIS WTA++ G
Sbjct: 197 CESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGF 256
Query: 227 AHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE-YDLEP 285
A ++AL F+ M+ +G++ +E+T G ++AC G + ++ + Y
Sbjct: 257 AQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSD 316
Query: 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
+ ++D++ K G +EEA V +M NV + S + H
Sbjct: 317 HVVIGSALIDMYSKCGNVEEAVNVFMSMN-NKNVFTYSSMILGLATH 362
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 249 bits (636), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 136/396 (34%), Positives = 222/396 (56%), Gaps = 39/396 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTH----FNNLTVIHHLHSHILKLGFISHVYVATS 56
+ L+ +M+R V SD F+ ++LK+C N+L +H+H+ + G+ SHVY+ T
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMT- 221
Query: 57 LLHEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWS 116
T++ Y++ G V A F MP+RNV SWS
Sbjct: 222 -----------------------------TLVDMYARFGCVDYASYVFGGMPVRNVVSWS 252
Query: 117 AMIAAYLNAGAYDPGLKLFREMI-SNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
AMIA Y G L+ FREM+ + +P+ +T+ +VL C+ L + L GK HG+
Sbjct: 253 AMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAA--LEQGKLIHGY 310
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
I++ + + + LV MY +CG L+ VF+ M +R+V+SW +LI GY + A
Sbjct: 311 ILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKA 370
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295
+ +FE M A G P +TF VL AC H GLV+EG++ F+ + ++ ++P+I+HY CMVD
Sbjct: 371 IQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVD 430
Query: 296 LFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
L G+A L+EA ++++ MR EP +WGS L +C+ H ++AER ++ L ++P+N G
Sbjct: 431 LLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRR-LFALEPKNAG 489
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARG 391
+ L+ D+Y + W+ +RV+KL+ ++ ++K G
Sbjct: 490 N-YVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPG 524
Score = 108 bits (270), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 99/349 (28%), Positives = 154/349 (44%), Gaps = 38/349 (10%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
Q + ++S PS L IL C H ++L+ +H HIL G ++AT L
Sbjct: 64 QAIRVLSQESSPSQQTYELLIL-CCGHRSSLSDALRVHRHILDNGSDQDPFLATKL---- 118
Query: 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAA 121
I YS G+V AR F++ R + W+A+ A
Sbjct: 119 --------------------------IGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRA 152
Query: 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGC--SHLGSVGLLMGKSAHGFIVKN 179
AG + L L+ +M + G+ D+ T VL C S L+ GK H + +
Sbjct: 153 LTLAGHGEEVLGLYWKM-NRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRR 211
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF 239
+ + I T LVDMYA+ G + YA VF M RNV+SW+A+I A G + +AL F
Sbjct: 212 GYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTF 271
Query: 240 -EMMQAT-GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
EMM+ T PN +T VL AC +++G+ I L+ + +V ++
Sbjct: 272 REMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRR-GLDSILPVISALVTMY 330
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQAL 346
G+ G LE V M + +V+ W S +++ H A ++ ++ L
Sbjct: 331 GRCGKLEVGQRVFDRMH-DRDVVSWNSLISSYGVHGYGKKAIQIFEEML 378
Score = 72.0 bits (175), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 116/274 (42%), Gaps = 23/274 (8%)
Query: 102 DFFERMPLRNVASWSAMIAAYLNAGA--------------YDPGLKLFREMISNEGLTPD 147
+F R PL+ + A+ +++GA + LK ++S E +P
Sbjct: 18 NFLPRSPLKPPSCSVALNNPSISSGAGAKISNNQLIQSLCKEGKLKQAIRVLSQES-SPS 76
Query: 148 QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMV 207
Q T ++ C H S+ + H I+ N + + +AT L+ MY+ G + YA V
Sbjct: 77 QQTYELLILCCGHRSSLSDAL--RVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKV 134
Query: 208 FELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
F+ +R + W AL G+ E+ L L+ M GV+ + T+T VL ACV +
Sbjct: 135 FDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECT 194
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCM---VDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324
K I H M VD++ + G ++ A V M + NV+ W +
Sbjct: 195 VNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVR-NVVSWSA 253
Query: 325 FLAA-CKEHKQFDMAERVIKQALRMVKPENDGGV 357
+A K K F+ A R ++ +R K + V
Sbjct: 254 MIACYAKNGKAFE-ALRTFREMMRETKDSSPNSV 286
>sp|Q9SR01|PP212_ARATH Pentatricopeptide repeat-containing protein At3g04750,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E81 PE=2
SV=1
Length = 661
Score = 248 bits (634), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 127/400 (31%), Positives = 240/400 (60%), Gaps = 9/400 (2%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLG--FISHVYVATSLL 58
++L+ +M + D +++L +L C H +++ + +H I + G + S++ ++ +LL
Sbjct: 217 LKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILSNALL 276
Query: 59 HEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSA 117
Y G A++ FD + +++ +WNTM+ G+ + G++ A+ F++MP R++ SW++
Sbjct: 277 DMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNS 336
Query: 118 MIAAYLNAGAYDPGLK-LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
++ Y G ++ LF EM E + PD++T+ +++SG ++ G L G+ HG +
Sbjct: 337 LLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGE--LSHGRWVHGLV 394
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
++ + + + +++ L+DMY KCG ++ A MVF+ E++V WT++I G A G + AL
Sbjct: 395 IRLQLKGDAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQAL 454
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
LF MQ GV PN +T VLTAC H+GLV+EG F + +++ +P +HYG +VDL
Sbjct: 455 QLFGRMQEEGVTPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPETEHYGSLVDL 514
Query: 297 FGKAGFLEEAYEVI-RTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355
+AG +EEA +++ + M + P+ +WGS L+AC+ + + AE + + L++ +PE +G
Sbjct: 515 LCRAGRVEEAKDIVQKKMPMRPSQSMWGSILSACRGGEDIETAELALTELLKL-EPEKEG 573
Query: 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
G + L+ ++Y +W +++ R+ M N+ V+K G S +
Sbjct: 574 G-YVLLSNIYATVGRWGYSDKTREAMENRGVKKTAGYSSV 612
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/371 (25%), Positives = 166/371 (44%), Gaps = 84/371 (22%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
L+S M R V D + L+++K+ + L+ + +H HI+ G +S L Y+
Sbjct: 120 LYSSMIRHRVSPDRQTFLYLMKASSF---LSEVKQIHCHIIVSGCLS--------LGNYL 168
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
WN+++K Y + GN A F RMP +V+S++ MI Y
Sbjct: 169 ---------------------WNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGY 207
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE-- 180
G LKL+ +M+S +G+ PD+ T+ ++L C HL + L GK HG+I +
Sbjct: 208 AKQGFSLEALKLYFKMVS-DGIEPDEYTVLSLLVCCGHLSDIRL--GKGVHGWIERRGPV 264
Query: 181 WELNEQIATILVDMYAKC--------------------------GFLKYALM-----VFE 209
+ N ++ L+DMY KC GF++ M VF+
Sbjct: 265 YSSNLILSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFD 324
Query: 210 LMEERNVISWTALICGSAHRGYSEDALS--LFEMMQATGVKPNEMTFTGVLTACVHTGLV 267
M +R+++SW +L+ G + +G + + +EM VKP+ +T +++ + G +
Sbjct: 325 QMPKRDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGEL 384
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYG------CMVDLFGKAGFLEEAYEVIRTMRLEPNVII 321
GR + L R+Q G ++D++ K G +E A+ V +T E +V +
Sbjct: 385 SHGRWV-------HGLVIRLQLKGDAFLSSALIDMYCKCGIIERAFMVFKTAT-EKDVAL 436
Query: 322 WGSFLAACKEH 332
W S + H
Sbjct: 437 WTSMITGLAFH 447
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 103/268 (38%), Gaps = 51/268 (19%)
Query: 13 PSDSFSILH----ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT---S 65
P S + H +L++C N + + I++ I + + L+ +T +
Sbjct: 27 PVQSLQLNHQSLVLLENCNSRNQF---KQVLAQIMRFNLICDTFPMSRLIFFSAITYPEN 83
Query: 66 FGFARKLF-DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLN 124
A+ LF + P N +NTMI S S N C
Sbjct: 84 LDLAKLLFLNFTPNPNVFVYNTMISAVSSSKNEC-------------------------- 117
Query: 125 AGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG-FIVKNEWEL 183
L+ MI + ++PD+ T ++ S L V K H IV L
Sbjct: 118 -------FGLYSSMIRHR-VSPDRQTFLYLMKASSFLSEV-----KQIHCHIIVSGCLSL 164
Query: 184 NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQ 243
+ LV Y + G A VF M +V S+ +I G A +G+S +AL L+ M
Sbjct: 165 GNYLWNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMV 224
Query: 244 ATGVKPNEMTFTGVLTACVHTGLVDEGR 271
+ G++P+E T +L C H + G+
Sbjct: 225 SDGIEPDEYTVLSLLVCCGHLSDIRLGK 252
>sp|Q3ECB8|PP128_ARATH Pentatricopeptide repeat-containing protein At1g77170
OS=Arabidopsis thaliana GN=PCMP-E21 PE=2 SV=1
Length = 467
Score = 247 bits (631), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 136/397 (34%), Positives = 216/397 (54%), Gaps = 33/397 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+Q++ M R +V D +S+ ++K+ ++ T+ LHS ++LGF+
Sbjct: 102 IQVYLGMVRSTVLPDRYSLPIVIKAAVQIHDFTLGKELHSVAVRLGFVG----------- 150
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
DE E +T Y K+G AR F+ P R + SW+A+I
Sbjct: 151 -------------DEFCESGFITL------YCKAGEFENARKVFDENPERKLGSWNAIIG 191
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
+AG + +++F +M GL PD T+ +V + C LG + L K E
Sbjct: 192 GLNHAGRANEAVEMFVDM-KRSGLEPDDFTMVSVTASCGGLGDLSLAFQLHKCVLQAKTE 250
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ + + L+DMY KCG + A +FE M +RNV+SW+++I G A G + +AL F
Sbjct: 251 EKSDIMMLNSLIDMYGKCGRMDLASHIFEEMRQRNVVSWSSMIVGYAANGNTLEALECFR 310
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ GV+PN++TF GVL+ACVH GLV+EG+ YF M+ E++LEP + HYGC+VDL +
Sbjct: 311 QMREFGVRPNKITFVGVLSACVHGGLVEEGKTYFAMMKSEFELEPGLSHYGCIVDLLSRD 370
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G L+EA +V+ M ++PNV++WG + C++ +MAE V + + +P ND GV+ +
Sbjct: 371 GQLKEAKKVVEEMPMKPNVMVWGCLMGGCEKFGDVEMAEWVAPYMVEL-EPWND-GVYVV 428
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397
+ ++Y + W+ ERVRKLM + V K S S+
Sbjct: 429 LANVYALRGMWKDVERVRKLMKTKKVAKIPAYSYAST 465
>sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein At1g31430
OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1
Length = 570
Score = 246 bits (628), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 141/399 (35%), Positives = 227/399 (56%), Gaps = 13/399 (3%)
Query: 3 LFSQMHRQS-VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+F +M ++S + D +I+ L +C+ NL + ++ ++ F V + +L+ +
Sbjct: 134 VFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVT-EFEMSVRIGNALVDMF 192
Query: 62 V-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
AR +FD + ++N W +M+ GY +G + EAR FER P+++V W+AM+
Sbjct: 193 CKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMN 252
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y+ +D L+LFR M G+ PD + ++L+GC+ G+ L GK HG+I +N
Sbjct: 253 GYVQFNRFDEALELFRCM-QTAGIRPDNFVLVSLLTGCAQTGA--LEQGKWIHGYINENR 309
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+++ + T LVDMYAKCG ++ AL VF ++ER+ SWT+LI G A G S AL L+
Sbjct: 310 VTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYY 369
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ GV+ + +TF VLTAC H G V EGRK F + E ++++P+ +H C++DL +A
Sbjct: 370 EMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLIDLLCRA 429
Query: 301 GFLEEAYEVIRTMRLEPN---VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE-NDGG 356
G L+EA E+I MR E + V ++ S L+A + + +AERV A ++ K E +D
Sbjct: 430 GLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAERV---AEKLEKVEVSDSS 486
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
TL+ +Y +WE VR+ M + +RK G S I
Sbjct: 487 AHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSI 525
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 92/358 (25%), Positives = 161/358 (44%), Gaps = 68/358 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ LF ++ Q + D+F++ +LKS + +H + +K G YV+ SL+
Sbjct: 31 LALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKAGLEFDSYVSNSLMGM 90
Query: 61 YV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + K+FDE+P+R+ V+WN +I
Sbjct: 91 YASLGKIEITHKVFDEMPQRDVVSWNGLI------------------------------- 119
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
++Y+ G ++ + +F+ M L D+ TI + LS CS L + L +G+ + F+V
Sbjct: 120 SSYVGNGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKN--LEIGERIYRFVV-T 176
Query: 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICG-------------- 225
E+E++ +I LVDM+ KCG L A VF+ M ++NV WT+++ G
Sbjct: 177 EFEMSVRIGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLF 236
Query: 226 ------------SAHRGYS-----EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268
+ GY ++AL LF MQ G++P+ +LT C TG ++
Sbjct: 237 ERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALE 296
Query: 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFL 326
+G+ I+E ++ +VD++ K G +E A EV ++ E + W S +
Sbjct: 297 QGKWIHGYINENRVTVDKVVGTA-LVDMYAKCGCIETALEVFYEIK-ERDTASWTSLI 352
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 136/274 (49%), Gaps = 12/274 (4%)
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174
++ M+ + + ++ L LF E+ +GL PD T+ VL L V + G+ HG
Sbjct: 14 YNKMLKSLADGKSFTKVLALFGEL-RGQGLYPDNFTLPVVLKSIGRLRKV--IEGEKVHG 70
Query: 175 FIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSED 234
+ VK E + ++ L+ MYA G ++ VF+ M +R+V+SW LI G ED
Sbjct: 71 YAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFED 130
Query: 235 ALSLFEMM-QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293
A+ +F+ M Q + +K +E T L+AC ++ G + ++ + E+++ RI + +
Sbjct: 131 AIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSVRIGN--AL 188
Query: 294 VDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353
VD+F K G L++A V +MR + NV W S + + D A + +++ P
Sbjct: 189 VDMFCKCGCLDKARAVFDSMR-DKNVKCWTSMVFGYVSTGRIDEARVLFERS-----PVK 242
Query: 354 DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVR 387
D ++T + + Y +++ A + + M +R
Sbjct: 243 DVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIR 276
>sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2
SV=1
Length = 559
Score = 245 bits (626), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 126/361 (34%), Positives = 214/361 (59%), Gaps = 6/361 (1%)
Query: 36 HHLHSHILKLGFISHVYVATSLLHEYVVTSFGF-ARKLFDELPERNAVTWNTMIKGYSKS 94
LH ++K G ++ ++LH YV A ++F + + V WN+MI G++K
Sbjct: 146 RQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKC 205
Query: 95 GNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAV 154
G + +A++ F+ MP RN SW++MI+ ++ G + L +FREM + + PD T+ ++
Sbjct: 206 GLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREM-QEKDVKPDGFTMVSL 264
Query: 155 LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER 214
L+ C++LG+ G+ H +IV+N +ELN + T L+DMY KCG ++ L VFE ++
Sbjct: 265 LNACAYLGASE--QGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKK 322
Query: 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF 274
+ W ++I G A+ G+ E A+ LF ++ +G++P+ ++F GVLTAC H+G V ++F
Sbjct: 323 QLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFF 382
Query: 275 KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQ 334
+++ E+Y +EP I+HY MV++ G AG LEEA +I+ M +E + +IW S L+AC++
Sbjct: 383 RLMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGN 442
Query: 335 FDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSV 394
+MA+R K L+ + P+ G + L+ + Y +E A R LM + + K G S
Sbjct: 443 VEMAKRAAK-CLKKLDPDETCG-YVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSS 500
Query: 395 I 395
I
Sbjct: 501 I 501
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/318 (22%), Positives = 131/318 (41%), Gaps = 70/318 (22%)
Query: 27 THFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVT--SFGFARKLFDELPERNAVTW 84
T + + + +H+ ++K G IS A+ +L + +A +F + +N W
Sbjct: 33 TQCSTMRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFVW 92
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI-SNEG 143
NT+I+G+S+S F M + +F +M+ S+
Sbjct: 93 NTIIRGFSRSS--------FPEM-----------------------AISIFIDMLCSSPS 121
Query: 144 LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY-------- 195
+ P ++T +V LG G+ HG ++K E + I ++ MY
Sbjct: 122 VKPQRLTYPSVFKAYGRLGQA--RDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIE 179
Query: 196 -----------------------AKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
AKCG + A +F+ M +RN +SW ++I G G
Sbjct: 180 AWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRF 239
Query: 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK-MIDEEYDLEPRIQHYG 291
+DAL +F MQ VKP+ T +L AC + G ++GR + ++ ++L +
Sbjct: 240 KDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIV--VT 297
Query: 292 CMVDLFGKAGFLEEAYEV 309
++D++ K G +EE V
Sbjct: 298 ALIDMYCKCGCIEEGLNV 315
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 103/240 (42%), Gaps = 41/240 (17%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F +M + V D F+++ +L +C + +HE
Sbjct: 243 LDMFREMQEKDVKPDGFTMVSLLNACAYLG--------------------ASEQGRWIHE 282
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
Y+V R F E N++ +I Y K G + E + FE P + ++ W++MI
Sbjct: 283 YIV------RNRF----ELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMIL 332
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF--IVK 178
N G + + LF E+ GL PD ++ VL+ C+H G V A F ++K
Sbjct: 333 GLANNGFEERAMDLFSEL-ERSGLEPDSVSFIGVLTACAHSGEV-----HRADEFFRLMK 386
Query: 179 NEWELNEQIA--TILVDMYAKCGFLKYALMVFELME-ERNVISWTALICGSAHRGYSEDA 235
++ + I T++V++ G L+ A + + M E + + W++L+ G E A
Sbjct: 387 EKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNVEMA 446
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 117/270 (43%), Gaps = 16/270 (5%)
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMG-----KSAHGFIVKNEWELNEQIAT-IL 191
++S G+T M LSG ++L + K H ++K + A+ +L
Sbjct: 5 ILSFSGVTVPAMPSSGSLSGNTYLRLIDTQCSTMRELKQIHASLIKTGLISDTVTASRVL 64
Query: 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM--QATGVKP 249
A + YA +VF + +N W +I G + + E A+S+F M + VKP
Sbjct: 65 AFCCASPSDMNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKP 124
Query: 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEV 309
+T+ V A G +GR+ M+ +E LE M+ ++ G L EA+ +
Sbjct: 125 QRLTYPSVFKAYGRLGQARDGRQLHGMVIKE-GLEDDSFIRNTMLHMYVTCGCLIEAWRI 183
Query: 310 IRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNE 369
M + +V+ W S + + D A+ + + P+ +G + + + N
Sbjct: 184 FLGM-IGFDVVAWNSMIMGFAKCGLIDQAQNLFDEM-----PQRNGVSWNSMISGFVRNG 237
Query: 370 KWEGAERVRKLMLNQNVRKARGSSVISSLS 399
+++ A + + M ++V K G +++S L+
Sbjct: 238 RFKDALDMFREMQEKDV-KPDGFTMVSLLN 266
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 245 bits (625), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 126/382 (32%), Positives = 220/382 (57%), Gaps = 6/382 (1%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLF 73
D++++ ++++CT +H ++ GF + +V T L+ Y + K+F
Sbjct: 107 DNYTVNFLVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVF 166
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
+ +P + V M+ ++ G+V AR FE MP R+ +W+AMI+ Y G L
Sbjct: 167 NSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALN 226
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
+F ++ EG+ + + + +VLS C+ LG+ L G+ AH +I +N+ ++ ++AT LVD
Sbjct: 227 VF-HLMQLEGVKVNGVAMISVLSACTQLGA--LDQGRWAHSYIERNKIKITVRLATTLVD 283
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
+YAKCG ++ A+ VF MEE+NV +W++ + G A G+ E L LF +M+ GV PN +T
Sbjct: 284 LYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVT 343
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
F VL C G VDEG+++F + E+ +EP+++HYGC+VDL+ +AG LE+A +I+ M
Sbjct: 344 FVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQM 403
Query: 314 RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEG 373
++P+ +W S L A + +K ++ K+ L + + G + L+ ++Y + W+
Sbjct: 404 PMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANH--GAYVLLSNIYADSNDWDN 461
Query: 374 AERVRKLMLNQNVRKARGSSVI 395
VR+ M ++ VRK G SV+
Sbjct: 462 VSHVRQSMKSKGVRKQPGCSVM 483
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 104/229 (45%), Gaps = 37/229 (16%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F M + V + +++ +L +CT L HS+I + V +AT
Sbjct: 225 LNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLAT----- 279
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
T++ Y+K G++ +A + F M +NV +WS+ +
Sbjct: 280 -------------------------TLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALN 314
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
G + L+LF ++ +G+TP+ +T +VL GCS VG + H ++NE
Sbjct: 315 GLAMNGFGEKCLELF-SLMKQDGVTPNAVTFVSVLRGCS---VVGFVDEGQRHFDSMRNE 370
Query: 181 WELNEQIA--TILVDMYAKCGFLKYALMVFELMEER-NVISWTALICGS 226
+ + Q+ LVD+YA+ G L+ A+ + + M + + W++L+ S
Sbjct: 371 FGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHAS 419
>sp|O22137|PP202_ARATH Pentatricopeptide repeat-containing protein At2g45350,
chloroplastic OS=Arabidopsis thaliana GN=CRR4 PE=3 SV=2
Length = 613
Score = 244 bits (624), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 119/327 (36%), Positives = 196/327 (59%), Gaps = 4/327 (1%)
Query: 69 ARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128
A+ LFD +P R+ VTW TMI GY+K G V A+ F++MP R+V ++++M+A Y+ +
Sbjct: 271 AKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYH 330
Query: 129 DPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA 188
L++F +M L PD T+ VL + LG + + H +IV+ ++ L ++
Sbjct: 331 MEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAI--DMHLYIVEKQFYLGGKLG 388
Query: 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248
L+DMY+KCG +++A++VFE +E +++ W A+I G A G E A + ++ +K
Sbjct: 389 VALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLK 448
Query: 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308
P+++TF GVL AC H+GLV EG F+++ ++ +EPR+QHYGCMVD+ ++G +E A
Sbjct: 449 PDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKN 508
Query: 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368
+I M +EPN +IW +FL AC HK+F+ E V K + ++ + + L+ ++Y
Sbjct: 509 LIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLI--LQAGYNPSSYVLLSNMYASF 566
Query: 369 EKWEGAERVRKLMLNQNVRKARGSSVI 395
W+ RVR +M + + K G S I
Sbjct: 567 GMWKDVRRVRTMMKERKIEKIPGCSWI 593
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 175/349 (50%), Gaps = 21/349 (6%)
Query: 12 VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFAR 70
V D FS+ +LK+C+ + +H + K G S +++ L+ Y+ G +R
Sbjct: 117 VSVDKFSLSLVLKACSRLGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSR 176
Query: 71 KLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP--LRNVASWSAMIAAYLN-AGA 127
++FD +P+R++V++N+MI GY K G + AR+ F+ MP ++N+ SW++MI+ Y +
Sbjct: 177 QMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDG 236
Query: 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQI 187
D KLF +M + ++ + M G V G + GL + W
Sbjct: 237 VDIASKLFADMPEKDLISWNSMIDGYVKHGRIE-DAKGLFDVMPRRDVVT---W------ 286
Query: 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF-EMMQATG 246
++D YAK GF+ +A +F+ M R+V+++ +++ G Y +AL +F +M + +
Sbjct: 287 -ATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESH 345
Query: 247 VKPNEMTFTGVLTACVHTGLVDEG-RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305
+ P++ T VL A G + + + ++++++ L ++ ++D++ K G ++
Sbjct: 346 LLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLG--VALIDMYSKCGSIQH 403
Query: 306 AYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-VKPEN 353
A V + ++ W + + H + A ++ Q R+ +KP++
Sbjct: 404 AMLVFEGIE-NKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDD 451
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 105/273 (38%), Gaps = 47/273 (17%)
Query: 154 VLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA--------TILVDMYAKCGFLKYAL 205
VL C V + G+ I+KN L +I L D +A+C F +Y +
Sbjct: 18 VLGSCKTSDDVNQIHGRLIKTGIIKNS-NLTTRIVLAFASSRRPYLAD-FARCVFHEYHV 75
Query: 206 MVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG 265
F E + W A+I +H AL L +M GV ++ + + VL AC G
Sbjct: 76 CSFSFGEVEDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLG 135
Query: 266 LVDEGRK-----------------------YFK-----MIDEEYDLEPRIQ--HYGCMVD 295
V G + Y K + + +D P+ Y M+D
Sbjct: 136 FVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMID 195
Query: 296 LFGKAGFLEEAYEVIRTMRLE-PNVIIWGSFLAA-CKEHKQFDMAERVIKQALRMVKPEN 353
+ K G + A E+ M +E N+I W S ++ + D+A ++ PE
Sbjct: 196 GYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADM-----PEK 250
Query: 354 DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386
D + + D Y + + E A+ + +M ++V
Sbjct: 251 DLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDV 283
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 243 bits (620), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 132/431 (30%), Positives = 222/431 (51%), Gaps = 43/431 (9%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+++F M +V D ++ +LK+C+ + + +H K+G S ++V L+
Sbjct: 125 VKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSM 184
Query: 61 YVVTSF-GFARKLFDELPERNAVTWNTMIKGYSK-------------------------- 93
Y F AR + DE+ R+ V+WN+++ GY++
Sbjct: 185 YGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTM 244
Query: 94 -----------SGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNE 142
+ NV +D F +M +++ SW+ MI Y+ ++L+ M +
Sbjct: 245 ASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRM-EAD 303
Query: 143 GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLK 202
G PD ++I +VL C ++ L GK HG+I + + N + L+DMYAKCG L+
Sbjct: 304 GFEPDAVSITSVLPACGDTSALSL--GKKIHGYIERKKLIPNLLLENALIDMYAKCGCLE 361
Query: 203 YALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACV 262
A VFE M+ R+V+SWTA+I G DA++LF +Q +G+ P+ + F L AC
Sbjct: 362 KARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACS 421
Query: 263 HTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
H GL++EGR FK++ + Y + PR++H CMVDL G+AG ++EAY I+ M +EPN +W
Sbjct: 422 HAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVW 481
Query: 323 GSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382
G+ L AC+ H D+ + L + PE G + L+ ++Y +WE +R +M
Sbjct: 482 GALLGACRVHSDTDIG-LLAADKLFQLAPEQ-SGYYVLLSNIYAKAGRWEEVTNIRNIMK 539
Query: 383 NQNVRKARGSS 393
++ ++K G+S
Sbjct: 540 SKGLKKNPGAS 550
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 123/259 (47%), Gaps = 11/259 (4%)
Query: 87 MIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
+++ Y+ +V AR F+ +P RNV + MI +Y+N G Y G+K+F M + P
Sbjct: 80 LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGC-NVRP 138
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
D T VL CS G++ ++G+ HG K + LV MY KCGFL A +
Sbjct: 139 DHYTFPCVLKACSCSGTI--VIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARL 196
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
V + M R+V+SW +L+ G A +DAL + M++ + + T +L A +T
Sbjct: 197 VLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNT-- 254
Query: 267 VDEGRKYFKMIDEEYDLEPR-IQHYGCMVDLFGKAGFLEEAYEVIRTMR---LEPNVIIW 322
E Y K D + + + + + M+ ++ K EA E+ M EP+ +
Sbjct: 255 TTENVMYVK--DMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSI 312
Query: 323 GSFLAACKEHKQFDMAERV 341
S L AC + + +++
Sbjct: 313 TSVLPACGDTSALSLGKKI 331
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 88/187 (47%), Gaps = 3/187 (1%)
Query: 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR 229
++ H I+ + N + L+ YA + A VF+ + ERNVI +I +
Sbjct: 59 RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118
Query: 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQH 289
G+ + + +F M V+P+ TF VL AC +G + GRK + L +
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSA-TKVGLSSTLFV 177
Query: 290 YGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349
+V ++GK GFL EA V+ M +V+ W S + ++++FD A V ++ + V
Sbjct: 178 GNGLVSMYGKCGFLSEARLVLDEMS-RRDVVSWNSLVVGYAQNQRFDDALEVCRE-MESV 235
Query: 350 KPENDGG 356
K +D G
Sbjct: 236 KISHDAG 242
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 76/318 (23%), Positives = 129/318 (40%), Gaps = 73/318 (22%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
++L+S+M D+ SI +L +C + L++ +H G+I + +LL E
Sbjct: 294 VELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIH------GYIERKKLIPNLLLE 347
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
N +I Y+K G + +ARD FE M R+V SW+AMI+
Sbjct: 348 ------------------------NALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMIS 383
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
AY +G + LF ++ + GL PD + L+ CSH G L G+S + +
Sbjct: 384 AYGFSGRGCDAVALFSKL-QDSGLVPDSIAFVTTLAACSHAGL--LEEGRSCFKLMT-DH 439
Query: 181 WELNEQIATI--LVDMYAKCGFLKYALMVFELME-ERNVISWTALICGS----------- 226
+++ ++ + +VD+ + G +K A + M E N W AL+
Sbjct: 440 YKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLL 499
Query: 227 -----------------------AHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263
A G E+ ++ +M++ G+K N + +H
Sbjct: 500 AADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIH 559
Query: 264 TGLVDEGRKYFKMIDEEY 281
T LV G + DE Y
Sbjct: 560 TFLV--GDRSHPQSDEIY 575
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 242 bits (617), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 130/398 (32%), Positives = 225/398 (56%), Gaps = 10/398 (2%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+F ++H D ++ +L S L + +H +++K G + V ++++ Y
Sbjct: 239 MFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYG 298
Query: 63 VTSFGFAR-KLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR----NVASWSA 117
+ + LF++ A N I G S++G V +A + FE + NV SW++
Sbjct: 299 KSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTS 358
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
+IA G L+LFREM G+ P+ +TI ++L C ++ ++G G+S HGF V
Sbjct: 359 IIAGCAQNGKDIEALELFREM-QVAGVKPNHVTIPSMLPACGNIAALG--HGRSTHGFAV 415
Query: 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237
+ N + + L+DMYAKCG + + +VF +M +N++ W +L+ G + G +++ +S
Sbjct: 416 RVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMS 475
Query: 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297
+FE + T +KP+ ++FT +L+AC GL DEG KYFKM+ EEY ++PR++HY CMV+L
Sbjct: 476 IFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLL 535
Query: 298 GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357
G+AG L+EAY++I+ M EP+ +WG+ L +C+ D+AE + + L ++PEN G
Sbjct: 536 GRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAE-IAAEKLFHLEPENP-GT 593
Query: 358 FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ L+ ++Y W + +R M + ++K G S I
Sbjct: 594 YVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWI 631
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/391 (24%), Positives = 176/391 (45%), Gaps = 46/391 (11%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
+FS+M + DS + ++ K C + V +H G +V S+ H Y+
Sbjct: 103 VFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYM 162
Query: 63 -VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLR----NVASWSA 117
G ARK+FD + +++ VT + ++ Y++ G + E M N+ SW+
Sbjct: 163 RCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNG 222
Query: 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177
+++ + +G + + +F++ I + G PDQ+T+ +VL S L MG+ HG+++
Sbjct: 223 ILSGFNRSGYHKEAVVMFQK-IHHLGFCPDQVTVSSVLPSVGD--SEMLNMGRLIHGYVI 279
Query: 178 KNEWELNEQIATILVDMYAKC-------------------------------GFLKYALM 206
K ++ + + ++DMY K G + AL
Sbjct: 280 KQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALE 339
Query: 207 VFELMEER----NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACV 262
+FEL +E+ NV+SWT++I G A G +AL LF MQ GVKPN +T +L AC
Sbjct: 340 MFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACG 399
Query: 263 HTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
+ + GR + L+ + ++D++ K G + + +++ M N++ W
Sbjct: 400 NIAALGHGRSTHGFAVRVHLLD-NVHVGSALIDMYAKCGRINLS-QIVFNMMPTKNLVCW 457
Query: 323 GSFLAACKEHKQFDMAERVIKQALRM-VKPE 352
S + H + + + +R +KP+
Sbjct: 458 NSLMNGFSMHGKAKEVMSIFESLMRTRLKPD 488
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/336 (20%), Positives = 136/336 (40%), Gaps = 72/336 (21%)
Query: 87 MIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP 146
+I YS +A + +P + S+S++I A A + + +F M S+ GL P
Sbjct: 56 LIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSH-GLIP 114
Query: 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206
D + + C+ L + +GK H + +++ + + MY +CG + A
Sbjct: 115 DSHVLPNLFKVCAELSA--FKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARK 172
Query: 207 VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266
VF+ M +++V++ +AL+C A +G E+ + + M+++G++ N +++ G+L+ +G
Sbjct: 173 VFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGY 232
Query: 267 VDEGRKYFKMI--------------------DEEYDLEPRIQH--------------YGC 292
E F+ I D E R+ H
Sbjct: 233 HKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISA 292
Query: 293 MVDLFGKAGFLE----------------------------------EAYEVIRTMRLEPN 318
M+D++GK+G + E +E+ + +E N
Sbjct: 293 MIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELN 352
Query: 319 VIIWGSFLAACKEH-KQFDMAERVIKQALRMVKPEN 353
V+ W S +A C ++ K + E + + VKP +
Sbjct: 353 VVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNH 388
>sp|Q9LXE8|PP386_ARATH Pentatricopeptide repeat-containing protein At5g15340,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2
SV=1
Length = 623
Score = 242 bits (617), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 134/403 (33%), Positives = 224/403 (55%), Gaps = 14/403 (3%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
M+LF +M R+ V D S++ + C +L H +K+G ++ V V +L+
Sbjct: 96 MKLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQQGHGVAVKMGVLTSVKVCNALMDM 155
Query: 61 YVVTSF-GFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y +++F+EL E++ V+W ++ K + R+ F MP RN +W+ M+
Sbjct: 156 YGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMV 215
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
A YL AG L+L EM+ G + +T+ ++LS C+ G+ L++G+ H + +K
Sbjct: 216 AGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGN--LVVGRWVHVYALKK 273
Query: 180 EWELNEQ-------IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232
E + E+ + T LVDMYAKCG + ++ VF LM +RNV++W AL G A G
Sbjct: 274 EMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLMRKRNVVTWNALFSGLAMHGKG 333
Query: 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC 292
+ +F M VKP+++TFT VL+AC H+G+VDEG + F + Y LEP++ HY C
Sbjct: 334 RMVIDMFPQM-IREVKPDDLTFTAVLSACSHSGIVDEGWRCFHSL-RFYGLEPKVDHYAC 391
Query: 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE 352
MVDL G+AG +EEA ++R M + PN ++ GS L +C H + ++AER+ ++ ++M
Sbjct: 392 MVDLLGRAGLIEEAEILMREMPVPPNEVVLGSLLGSCSVHGKVEIAERIKRELIQMSPGN 451
Query: 353 NDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ + L+ ++Y + + A+ +R + + +RK G S I
Sbjct: 452 TEYQI--LMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGLSSI 492
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 241 bits (616), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 128/395 (32%), Positives = 217/395 (54%), Gaps = 35/395 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+++ +M + DSF++ +L + + ++ +H ++++ G S VY+ +SL
Sbjct: 227 LRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSL--- 283
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ Y+KS + ++ F R+ R+ SW++++A
Sbjct: 284 ---------------------------VDMYAKSARIEDSERVFSRLYCRDGISWNSLVA 316
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y+ G Y+ L+LFR+M++ + + P + +V+ C+HL + L +GK HG++++
Sbjct: 317 GYVQNGRYNEALRLFRQMVTAK-VKPGAVAFSSVIPACAHLAT--LHLGKQLHGYVLRGG 373
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ N IA+ LVDMY+KCG +K A +F+ M + +SWTA+I G A G+ +A+SLFE
Sbjct: 374 FGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFE 433
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M+ GVKPN++ F VLTAC H GLVDE YF + + Y L ++HY + DL G+A
Sbjct: 434 EMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRA 493
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G LEEAY I M +EP +W + L++C HK ++AE+V ++ V EN G + L
Sbjct: 494 GKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIF-TVDSEN-MGAYVL 551
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+C++Y N +W+ ++R M + +RK S I
Sbjct: 552 MCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWI 586
Score = 138 bits (348), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 105/381 (27%), Positives = 176/381 (46%), Gaps = 22/381 (5%)
Query: 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVV 63
F +M D +LKSCT +L +H I++LG +Y +L++ Y
Sbjct: 93 FVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYA- 151
Query: 64 TSFGFARKL-----FDELPERNAVTWNTMIKGYS--KSGNVCEARDFFERMPLRNVASWS 116
G K+ FDE+P+R + + + +K + + R FE MP ++V S++
Sbjct: 152 KLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYN 211
Query: 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
+IA Y +G Y+ L++ REM + + L PD T+ +VL S V ++ GK HG++
Sbjct: 212 TIIAGYAQSGMYEDALRMVREMGTTD-LKPDSFTLSSVLPIFSEY--VDVIKGKEIHGYV 268
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
++ + + I + LVDMYAK ++ + VF + R+ ISW +L+ G G +AL
Sbjct: 269 IRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEAL 328
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
LF M VKP + F+ V+ AC H + G++ + I +VD+
Sbjct: 329 RLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRG-GFGSNIFIASALVDM 387
Query: 297 FGKAGFLEEAYEVIRTMRLEPNV----IIWGSFLAACKEHKQFDMAERVIKQALRMVKPE 352
+ K G ++ A ++ M + V II G L H+ + E + +Q VKP
Sbjct: 388 YSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHG-HGHEAVSLFEEMKRQG---VKPN 443
Query: 353 NDG--GVFTLICDLYTMNEKW 371
V T + ++E W
Sbjct: 444 QVAFVAVLTACSHVGLVDEAW 464
Score = 35.8 bits (81), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 169 GKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAH 228
K H ++ + L+ A+I++ +Y L AL++F+ ++ V++W ++I
Sbjct: 24 AKQLHAQFIRTQ-SLSHTSASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTD 82
Query: 229 RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACV 262
+ AL+ F M+A+G P+ F VL +C
Sbjct: 83 QSLFSKALASFVEMRASGRCPDHNVFPSVLKSCT 116
>sp|P0C8Q8|PP394_ARATH Pentatricopeptide repeat-containing protein At5g19020,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E42 PE=2
SV=1
Length = 685
Score = 241 bits (616), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 220/363 (60%), Gaps = 12/363 (3%)
Query: 37 HLHSHILKLGFISHVYVATSLLHEYVVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSG 95
LH I+K GF + ++ +++H Y V++ A + F+ + + + N +I G+ K+G
Sbjct: 326 QLHGTIVKRGFDCYDFLQATIIHFYAVSNDIKLALQQFEASVKDHIASRNALIAGFVKNG 385
Query: 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155
V +AR+ F++ +++ SW+AMI+ Y + + L LFREMIS+ + PD +T+ +V
Sbjct: 386 MVEQAREVFDQTHDKDIFSWNAMISGYAQSLSPQLALHLFREMISSSQVKPDAITMVSVF 445
Query: 156 SGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERN 215
S S LGS L GK AH ++ + N+ + ++DMYAKCG ++ AL +F + +N
Sbjct: 446 SAISSLGS--LEEGKRAHDYLNFSTIPPNDNLTAAIIDMYAKCGSIETALNIFH--QTKN 501
Query: 216 VIS-----WTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEG 270
+ S W A+ICGSA G+++ AL L+ +Q+ +KPN +TF GVL+AC H GLV+ G
Sbjct: 502 ISSSTISPWNAIICGSATHGHAKLALDLYSDLQSLPIKPNSITFVGVLSACCHAGLVELG 561
Query: 271 RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330
+ YF+ + ++ +EP I+HYGCMVDL GKAG LEEA E+I+ M ++ +V+IWG L+A +
Sbjct: 562 KTYFESMKSDHGIEPDIKHYGCMVDLLGKAGRLEEAKEMIKKMPVKADVMIWGMLLSASR 621
Query: 331 EHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKAR 390
H ++AE + L + P + GG ++ ++Y +WE VR+ M ++V +R
Sbjct: 622 THGNVEIAE-LAATELAAIDPSH-GGCKVMLSNVYADAGRWEDVALVREEMRTRDVEWSR 679
Query: 391 GSS 393
S
Sbjct: 680 AFS 682
Score = 152 bits (385), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 103/364 (28%), Positives = 175/364 (48%), Gaps = 44/364 (12%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
M+LF +M + + ++ ++ +C+H + L S +KL V+V+T+LLH
Sbjct: 158 MELFREMRNLGIMLNEVTLATVISACSHLGGIWDCRMLQSLAIKLKLEGRVFVSTNLLHM 217
Query: 61 YVVT-SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMI 119
Y + ARKLFDE+PERN VTWN M+ GYSK+G + +A + F+++ +++ SW MI
Sbjct: 218 YCLCLCLKDARKLFDEMPERNLVTWNVMLNGYSKAGLIEQAEELFDQITEKDIVSWGTMI 277
Query: 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179
L D L + EM+ G+ P ++ + +LS + SVG G HG IVK
Sbjct: 278 DGCLRKNQLDEALVYYTEMLRC-GMKPSEVMMVDLLSASAR--SVGSSKGLQLHGTIVKR 334
Query: 180 EWELNEQIATILVDMYA-------------------------------KCGFLKYALMVF 208
++ + + ++ YA K G ++ A VF
Sbjct: 335 GFDCYDFLQATIIHFYAVSNDIKLALQQFEASVKDHIASRNALIAGFVKNGMVEQAREVF 394
Query: 209 ELMEERNVISWTALICGSAHRGYSEDALSLF-EMMQATGVKPNEMTFTGVLTACVHTGLV 267
+ ++++ SW A+I G A + AL LF EM+ ++ VKP+ +T V +A G +
Sbjct: 395 DQTHDKDIFSWNAMISGYAQSLSPQLALHLFREMISSSQVKPDAITMVSVFSAISSLGSL 454
Query: 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEV------IRTMRLEP-NVI 320
+EG++ ++ + P ++D++ K G +E A + I + + P N I
Sbjct: 455 EEGKRAHDYLNFS-TIPPNDNLTAAIIDMYAKCGSIETALNIFHQTKNISSSTISPWNAI 513
Query: 321 IWGS 324
I GS
Sbjct: 514 ICGS 517
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/418 (22%), Positives = 177/418 (42%), Gaps = 70/418 (16%)
Query: 18 SILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSF-GFARKLFDEL 76
+++ L SC N++T +H +LK G S+ Y+ S+L+ Y A +F +
Sbjct: 43 ALVSALGSCASSNDVTCGRQIHCRVLKSGLDSNGYICNSVLNMYAKCRLLADAESVFRDH 102
Query: 77 PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFR 136
+ ++ ++N M+ GY +S + +A F+ MP R+ S++ +I Y + ++LFR
Sbjct: 103 AKLDSASFNIMVDGYVRSRRLWDALKLFDVMPERSCVSYTTLIKGYAQNNQWSEAMELFR 162
Query: 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA 196
EM N G+ +++T+ V+S CSHLG G+ + +K + E ++T L+ MY
Sbjct: 163 EM-RNLGIMLNEVTLATVISACSHLG--GIWDCRMLQSLAIKLKLEGRVFVSTNLLHMYC 219
Query: 197 KCGFLKYALMVFELMEERN-------------------------------VISWTALICG 225
C LK A +F+ M ERN ++SW +I G
Sbjct: 220 LCLCLKDARKLFDEMPERNLVTWNVMLNGYSKAGLIEQAEELFDQITEKDIVSWGTMIDG 279
Query: 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC-----------VHTGLVDEGRKYF 274
+ ++AL + M G+KP+E+ +L+A +H +V G +
Sbjct: 280 CLRKNQLDEALVYYTEMLRCGMKPSEVMMVDLLSASARSVGSSKGLQLHGTIVKRGFDCY 339
Query: 275 KMIDE-------------------EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRL 315
+ E ++ I ++ F K G +E+A EV
Sbjct: 340 DFLQATIIHFYAVSNDIKLALQQFEASVKDHIASRNALIAGFVKNGMVEQAREVFDQTH- 398
Query: 316 EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG----GVFTLICDLYTMNE 369
+ ++ W + ++ + +A + ++ + + + D VF+ I L ++ E
Sbjct: 399 DKDIFSWNAMISGYAQSLSPQLALHLFREMISSSQVKPDAITMVSVFSAISSLGSLEE 456
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 105/234 (44%), Gaps = 41/234 (17%)
Query: 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235
+ ++ +L+ I+VD Y + L AL +F++M ER+ +S+T LI G A +A
Sbjct: 98 VFRDHAKLDSASFNIMVDGYVRSRRLWDALKLFDVMPERSCVSYTTLIKGYAQNNQWSEA 157
Query: 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTG--------------LVDEGRKYF------- 274
+ LF M+ G+ NE+T V++AC H G L EGR +
Sbjct: 158 MELFREMRNLGIMLNEVTLATVISACSHLGGIWDCRMLQSLAIKLKLEGRVFVSTNLLHM 217
Query: 275 -----------KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWG 323
K+ DE E + + M++ + KAG +E+A E+ + E +++ WG
Sbjct: 218 YCLCLCLKDARKLFDEMP--ERNLVTWNVMLNGYSKAGLIEQAEELFDQIT-EKDIVSWG 274
Query: 324 SFLAACKEHKQFDMAERVIKQALRM-VKPENDGGVFTLICDLYTMNEKWEGAER 376
+ + C Q D A + LR +KP ++ DL + + + G+ +
Sbjct: 275 TMIDGCLRKNQLDEALVYYTEMLRCGMKPSE-----VMMVDLLSASARSVGSSK 323
>sp|Q9ZQA1|PP188_ARATH Pentatricopeptide repeat-containing protein At2g36730
OS=Arabidopsis thaliana GN=PCMP-E44 PE=3 SV=1
Length = 501
Score = 241 bits (616), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 139/397 (35%), Positives = 218/397 (54%), Gaps = 41/397 (10%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
++S+M R+ + + + +LK+C F LT + +LK GF VYV +L+H Y
Sbjct: 100 VYSEMKRRGIKPNKLTFPFLLKACASFLGLTAGRQIQVEVLKHGFDFDVYVGNNLIHLY- 158
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
G +K D AR F+ M RNV SW++++ A
Sbjct: 159 ----GTCKKTSD-------------------------ARKVFDEMTERNVVSWNSIMTAL 189
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+ G + + F EMI PD+ T+ +LS C L +GK H ++ E E
Sbjct: 190 VENGKLNLVFECFCEMIGKR-FCPDETTMVVLLSACGG----NLSLGKLVHSQVMVRELE 244
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLF-EM 241
LN ++ T LVDMYAK G L+YA +VFE M ++NV +W+A+I G A G++E+AL LF +M
Sbjct: 245 LNCRLGTALVDMYAKSGGLEYARLVFERMVDKNVWTWSAMIVGLAQYGFAEEALQLFSKM 304
Query: 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301
M+ + V+PN +TF GVL AC HTGLVD+G KYF +++ + ++P + HYG MVD+ G+AG
Sbjct: 305 MKESSVRPNYVTFLGVLCACSHTGLVDDGYKYFHEMEKIHKIKPMMIHYGAMVDILGRAG 364
Query: 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFD---MAERVIKQALRMVKPENDGGVF 358
L EAY+ I+ M EP+ ++W + L+AC H D + E+V K+ + + +P+ G +
Sbjct: 365 RLNEAYDFIKKMPFEPDAVVWRTLLSACSIHHDEDDEGIGEKVKKRLIEL-EPKRSGNL- 422
Query: 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
++ + + W A VR++M ++K G S +
Sbjct: 423 VIVANRFAEARMWAEAAEVRRVMKETKMKKIAGESCL 459
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 81/335 (24%), Positives = 140/335 (41%), Gaps = 49/335 (14%)
Query: 20 LHILKSCTHFNNLTVIH---HLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDEL 76
L LK C+ +L IH HL S IS + +SL + FAR L
Sbjct: 17 LIFLKLCSSIKHLLQIHGQIHLSSLQNDSFIISELVRVSSL---SLAKDLAFARTLLLHS 73
Query: 77 PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFR 136
+ TWN + +GYS S + P+ ++ +S M
Sbjct: 74 SDSTPSTWNMLSRGYSSSDS-----------PVESIWVYSEM------------------ 104
Query: 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA 196
G+ P+++T +L C+ +GL G+ ++K+ ++ + + L+ +Y
Sbjct: 105 ---KRRGIKPNKLTFPFLLKACASF--LGLTAGRQIQVEVLKHGFDFDVYVGNNLIHLYG 159
Query: 197 KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTG 256
C A VF+ M ERNV+SW +++ G F M P+E T
Sbjct: 160 TCKKTSDARKVFDEMTERNVVSWNSIMTALVENGKLNLVFECFCEMIGKRFCPDETTMVV 219
Query: 257 VLTACVHTGLVDEGR-KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRL 315
+L+AC G + G+ + +++ E +L R+ +VD++ K+G LE A V M +
Sbjct: 220 LLSAC--GGNLSLGKLVHSQVMVRELELNCRLG--TALVDMYAKSGGLEYARLVFERM-V 274
Query: 316 EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVK 350
+ NV W + + Q+ AE ++ +M+K
Sbjct: 275 DKNVWTWSAMIVGL---AQYGFAEEALQLFSKMMK 306
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 88/187 (47%), Gaps = 13/187 (6%)
Query: 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY 61
+ F +M + D +++ +L +C NL++ +HS ++ + + T+L+ Y
Sbjct: 200 ECFCEMIGKRFCPDETTMVVLLSACG--GNLSLGKLVHSQVMVRELELNCRLGTALVDMY 257
Query: 62 VVTS-FGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERM----PLR-NVASW 115
+ +AR +F+ + ++N TW+ MI G ++ G EA F +M +R N ++
Sbjct: 258 AKSGGLEYARLVFERMVDKNVWTWSAMIVGLAQYGFAEEALQLFSKMMKESSVRPNYVTF 317
Query: 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175
++ A + G D G K F EM + P + GA++ LG G L A+ F
Sbjct: 318 LGVLCACSHTGLVDDGYKYFHEMEKIHKIKPMMIHYGAMV---DILGRAGRL--NEAYDF 372
Query: 176 IVKNEWE 182
I K +E
Sbjct: 373 IKKMPFE 379
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 241 bits (616), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 133/395 (33%), Positives = 215/395 (54%), Gaps = 35/395 (8%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F +M + F+I +L +C + LH +K ++YV T+LL
Sbjct: 147 LDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALL-- 204
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
Y+K G + +A FE M ++ +WS+M+A
Sbjct: 205 ----------------------------DLYAKCGMIKDAVQVFESMQDKSSVTWSSMVA 236
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
Y+ Y+ L L+R L +Q T+ +V+ CS+L + L+ GK H I K+
Sbjct: 237 GYVQNKNYEEALLLYRRA-QRMSLEQNQFTLSSVICACSNLAA--LIEGKQMHAVICKSG 293
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
+ N +A+ VDMYAKCG L+ + ++F ++E+N+ W +I G A ++ + LFE
Sbjct: 294 FGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFE 353
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
MQ G+ PNE+TF+ +L+ C HTGLV+EGR++FK++ Y L P + HY CMVD+ G+A
Sbjct: 354 KMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRA 413
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360
G L EAYE+I+++ +P IWGS LA+C+ +K ++AE V + L ++PEN G L
Sbjct: 414 GLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAE-VAAEKLFELEPENAGN-HVL 471
Query: 361 ICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+ ++Y N++WE + RKL+ + +V+K RG S I
Sbjct: 472 LSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWI 506
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 131/257 (50%), Gaps = 5/257 (1%)
Query: 78 ERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137
E + N +I YSK G V AR F+ M R++ SW+ MI Y L +F E
Sbjct: 93 EGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLE 152
Query: 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197
M NEG + TI +VLS C + L K H VK +LN + T L+D+YAK
Sbjct: 153 M-RNEGFKFSEFTISSVLSACG--VNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAK 209
Query: 198 CGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGV 257
CG +K A+ VFE M++++ ++W++++ G E+AL L+ Q ++ N+ T + V
Sbjct: 210 CGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSV 269
Query: 258 LTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEP 317
+ AC + + EG++ +I + + VD++ K G L E+Y + ++ E
Sbjct: 270 ICACSNLAALIEGKQMHAVICKS-GFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQ-EK 327
Query: 318 NVIIWGSFLAACKEHKQ 334
N+ +W + ++ +H +
Sbjct: 328 NLELWNTIISGFAKHAR 344
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 119/223 (53%), Gaps = 6/223 (2%)
Query: 154 VLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE 213
+L C+ G+V + K+ HG I++ + E + + +L++ Y+KCGF++ A VF+ M E
Sbjct: 67 ILQLCARNGAV--MEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLE 124
Query: 214 RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC-VHTGLVDEGRK 272
R+++SW +I +AL +F M+ G K +E T + VL+AC V+ ++ +
Sbjct: 125 RSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKL 184
Query: 273 YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332
+ + DL + ++DL+ K G +++A +V +M+ + + + W S +A ++
Sbjct: 185 HCLSVKTCIDLNLYVG--TALLDLYAKCGMIKDAVQVFESMQ-DKSSVTWSSMVAGYVQN 241
Query: 333 KQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAE 375
K ++ A + ++A RM +N + ++IC + EG +
Sbjct: 242 KNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQ 284
>sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protein At4g14050,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2
SV=3
Length = 612
Score = 237 bits (604), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 118/382 (30%), Positives = 208/382 (54%), Gaps = 4/382 (1%)
Query: 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSF-GFARKLF 73
D F ++K+C + ++ +H H + + + V +SL+ Y A+ +F
Sbjct: 104 DDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVF 163
Query: 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK 133
D + +N ++W M+ GY+KSG EA + F +P++N+ SW+A+I+ ++ +G
Sbjct: 164 DSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFS 223
Query: 134 LFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193
+F EM D + + +++ C++L + + G+ HG ++ ++ I+ L+D
Sbjct: 224 VFTEMRRERVDILDPLVLSSIVGACANLAAS--IAGRQVHGLVIALGFDSCVFISNALID 281
Query: 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253
MYAKC + A +F M R+V+SWT+LI G A G +E AL+L++ M + GVKPNE+T
Sbjct: 282 MYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVT 341
Query: 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313
F G++ AC H G V++GR+ F+ + ++Y + P +QHY C++DL G++G L+EA +I TM
Sbjct: 342 FVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTM 401
Query: 314 RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEG 373
P+ W + L+ACK + M R+ + K + D + L+ ++Y W
Sbjct: 402 PFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLK-DPSTYILLSNIYASASLWGK 460
Query: 374 AERVRKLMLNQNVRKARGSSVI 395
R+ + VRK G S +
Sbjct: 461 VSEARRKLGEMEVRKDPGHSSV 482
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 94/354 (26%), Positives = 153/354 (43%), Gaps = 72/354 (20%)
Query: 20 LHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPER 79
LH L+ C LT LH+HI+KLG + +A
Sbjct: 7 LHQLQLCARNRTLTTAKALHAHIVKLGIVQCCPLA------------------------- 41
Query: 80 NAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI 139
NT++ Y K G A F+ MP R+ +W++++ A A L +F +
Sbjct: 42 -----NTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVG 96
Query: 140 SNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG 199
S+ GL PD A++ C++LGS+ G+ H + +E+ +E + + LVDMYAKCG
Sbjct: 97 SSSGLRPDDFVFSALVKACANLGSID--HGRQVHCHFIVSEYANDEVVKSSLVDMYAKCG 154
Query: 200 FLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLT 259
L A VF+ + +N ISWTA++ G A G E+AL LF ++ N ++T +++
Sbjct: 155 LLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVK----NLYSWTALIS 210
Query: 260 ACVHTGLVDEGRKYF-KMIDEEYD-LEPRI------------------QHYG-------- 291
V +G E F +M E D L+P + Q +G
Sbjct: 211 GFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFD 270
Query: 292 -------CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMA 338
++D++ K + A ++ MR +V+ W S + +H Q + A
Sbjct: 271 SCVFISNALIDMYAKCSDVIAAKDIFSRMR-HRDVVSWTSLIVGMAQHGQAEKA 323
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 236 bits (603), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 133/393 (33%), Positives = 214/393 (54%), Gaps = 35/393 (8%)
Query: 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV 62
LF ++ + D+++ +LK+C L LH +KLG +VYV
Sbjct: 116 LFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCP------- 168
Query: 63 VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAY 122
T+I Y++ +V AR F+R+ V ++AMI Y
Sbjct: 169 -----------------------TLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGY 205
Query: 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182
+ L LFREM + L P+++T+ +VLS C+ LGS+ L GK H + K+ +
Sbjct: 206 ARRNRPNEALSLFREM-QGKYLKPNEITLLSVLSSCALLGSLDL--GKWIHKYAKKHSFC 262
Query: 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMM 242
++ T L+DM+AKCG L A+ +FE M ++ +W+A+I A+ G +E ++ +FE M
Sbjct: 263 KYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERM 322
Query: 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302
++ V+P+E+TF G+L AC HTG V+EGRKYF + ++ + P I+HYG MVDL +AG
Sbjct: 323 RSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGN 382
Query: 303 LEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362
LE+AYE I + + P ++W LAAC H D+AE+V ++ + ++ GG + ++
Sbjct: 383 LEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFEL--DDSHGGDYVILS 440
Query: 363 DLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395
+LY N+KWE + +RK+M ++ K G S I
Sbjct: 441 NLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSI 473
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 141/314 (44%), Gaps = 42/314 (13%)
Query: 22 ILKSCTHFNNLTVI--HHLHSHILKLGFISH-VYVATSLLHEYVVTSFGFARKLFDELPE 78
++ C L I + + SHI + F++ + T E +S +AR LF+ + E
Sbjct: 35 LISKCNSLRELMQIQAYAIKSHIEDVSFVAKLINFCTESPTE---SSMSYARHLFEAMSE 91
Query: 79 RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM 138
+ V +N+M +GYS+ N E LF E+
Sbjct: 92 PDIVIFNSMARGYSRFTNPLEV-------------------------------FSLFVEI 120
Query: 139 ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198
+ +G+ PD T ++L C+ + L G+ H +K + N + L++MY +C
Sbjct: 121 LE-DGILPDNYTFPSLLKACA--VAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTEC 177
Query: 199 GFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL 258
+ A VF+ + E V+ + A+I G A R +ALSLF MQ +KPNE+T VL
Sbjct: 178 EDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVL 237
Query: 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPN 318
++C G +D G K+ +++ ++ ++D+F K G L++A + MR + +
Sbjct: 238 SSCALLGSLDLG-KWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYK-D 295
Query: 319 VIIWGSFLAACKEH 332
W + + A H
Sbjct: 296 TQAWSAMIVAYANH 309
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 72/183 (39%), Gaps = 43/183 (23%)
Query: 201 LKYALMVFELMEERNVISWTALICGSAHRGYSE-----DALSLFEMMQATGVKPNEMTFT 255
+ YA +FE M E +++ I S RGYS + SLF + G+ P+ TF
Sbjct: 79 MSYARHLFEAMSEPDIV-----IFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFP 133
Query: 256 GVLTACVHTGLVDEGRK-------------------YFKMIDEEYD-----------LEP 285
+L AC ++EGR+ M E D +EP
Sbjct: 134 SLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEP 193
Query: 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTMR---LEPNVIIWGSFLAACKEHKQFDMAERVI 342
+ Y M+ + + EA + R M+ L+PN I S L++C D+ + +
Sbjct: 194 CVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIH 253
Query: 343 KQA 345
K A
Sbjct: 254 KYA 256
>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300
OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1
Length = 857
Score = 236 bits (602), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 116/311 (37%), Positives = 192/311 (61%), Gaps = 6/311 (1%)
Query: 86 TMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLT 145
+I Y+K G + A + FER+ R++ SW++MI + + +FR+M G+
Sbjct: 481 AVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQM-GVSGIC 539
Query: 146 PDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYAL 205
D ++I A LS C++L S GK+ HGF++K+ + + L+DMYAKCG LK A+
Sbjct: 540 YDCVSISAALSACANLPSESF--GKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAM 597
Query: 206 MVFELMEERNVISWTALICGSAHRGYSEDALSLF-EMMQATGVKPNEMTFTGVLTACVHT 264
VF+ M+E+N++SW ++I + G +D+L LF EM++ +G++P+++TF ++++C H
Sbjct: 598 NVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHV 657
Query: 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324
G VDEG ++F+ + E+Y ++P+ +HY C+VDLFG+AG L EAYE +++M P+ +WG+
Sbjct: 658 GDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGT 717
Query: 325 FLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384
L AC+ HK ++AE V L + P N G + LI + + +WE +VR LM +
Sbjct: 718 LLGACRLHKNVELAE-VASSKLMDLDPSN-SGYYVLISNAHANAREWESVTKVRSLMKER 775
Query: 385 NVRKARGSSVI 395
V+K G S I
Sbjct: 776 EVQKIPGYSWI 786
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/335 (24%), Positives = 160/335 (47%), Gaps = 35/335 (10%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ F +M V D+ + +L S + F NL +H +I++ +++ ++L
Sbjct: 325 LTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSAL--- 381
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
I Y K V A++ F + +V ++AMI+
Sbjct: 382 ---------------------------IDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMIS 414
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE 180
YL+ G Y L++FR ++ + ++P+++T+ ++L L + L +G+ HGFI+K
Sbjct: 415 GYLHNGLYIDSLEMFRWLVKVK-ISPNEITLVSILPVIGIL--LALKLGRELHGFIIKKG 471
Query: 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFE 240
++ I ++DMYAKCG + A +FE + +R+++SW ++I A A+ +F
Sbjct: 472 FDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFR 531
Query: 241 MMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300
M +G+ + ++ + L+AC + G+ + ++ L + ++D++ K
Sbjct: 532 QMGVSGICYDCVSISAALSACANLPSESFGKAIHGFM-IKHSLASDVYSESTLIDMYAKC 590
Query: 301 GFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQF 335
G L+ A V +TM+ E N++ W S +AAC H +
Sbjct: 591 GNLKAAMNVFKTMK-EKNIVSWNSIIAACGNHGKL 624
Score = 108 bits (269), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 127/262 (48%), Gaps = 9/262 (3%)
Query: 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144
N+++ YSK G +A F M + +W+ MI+ Y+ +G + L F EMIS+ G+
Sbjct: 278 NSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISS-GV 336
Query: 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
PD +T ++L S + L K H +I+++ L+ + + L+D Y KC + A
Sbjct: 337 LPDAITFSSLLPSVSKFEN--LEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMA 394
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
+F +V+ +TA+I G H G D+L +F + + PNE+T +L
Sbjct: 395 QNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGIL 454
Query: 265 GLVDEGRKYFK-MIDEEYDLEPRIQHYGC-MVDLFGKAGFLEEAYEVIRTMRLEPNVIIW 322
+ GR+ +I + +D I GC ++D++ K G + AYE+ + + +++ W
Sbjct: 455 LALKLGRELHGFIIKKGFDNRCNI---GCAVIDMYAKCGRMNLAYEIFERLS-KRDIVSW 510
Query: 323 GSFLAACKEHKQFDMAERVIKQ 344
S + C + A + +Q
Sbjct: 511 NSMITRCAQSDNPSAAIDIFRQ 532
Score = 92.8 bits (229), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 110/249 (44%), Gaps = 33/249 (13%)
Query: 12 VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARK 71
V D + ++K+C N I L + LG + +VA+SL
Sbjct: 134 VSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSL-------------- 179
Query: 72 LFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPG 131
IK Y + G + F+R+ ++ W+ M+ Y GA D
Sbjct: 180 ----------------IKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSV 223
Query: 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191
+K F M ++ ++P+ +T VLS C+ + + +G HG +V + + I L
Sbjct: 224 IKGFSVMRMDQ-ISPNAVTFDCVLSVCA--SKLLIDLGVQLHGLVVVSGVDFEGSIKNSL 280
Query: 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE 251
+ MY+KCG A +F +M + ++W +I G G E++L+ F M ++GV P+
Sbjct: 281 LSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDA 340
Query: 252 MTFTGVLTA 260
+TF+ +L +
Sbjct: 341 ITFSSLLPS 349
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 30/164 (18%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE 60
+ +F QM + D SI L +C + + + +H ++K S VY
Sbjct: 527 IDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVY-------- 578
Query: 61 YVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIA 120
+ +T+I Y+K GN+ A + F+ M +N+ SW+++IA
Sbjct: 579 ----------------------SESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIA 616
Query: 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV 164
A N G L LF EM+ G+ PDQ+T ++S C H+G V
Sbjct: 617 ACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDV 660
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 115/245 (46%), Gaps = 17/245 (6%)
Query: 91 YSKSGNVCEARDFFERMPLR--NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ 148
Y+ G+ + F R+ LR ++ W+++I++++ G + L + +M+ G++PD
Sbjct: 80 YAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCF-GVSPDV 138
Query: 149 MTIGAVLSGCSHL----GSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA 204
T ++ C L G L S+ G + NE +A+ L+ Y + G +
Sbjct: 139 STFPCLVKACVALKNFKGIDFLSDTVSSLGM------DCNEFVASSLIKAYLEYGKIDVP 192
Query: 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264
+F+ + +++ + W ++ G A G + + F +M+ + PN +TF VL+ C
Sbjct: 193 SKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASK 252
Query: 265 GLVDEGRKYFKM-IDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWG 323
L+D G + + + D E I++ ++ ++ K G ++A ++ R M + + W
Sbjct: 253 LLIDLGVQLHGLVVVSGVDFEGSIKN--SLLSMYSKCGRFDDASKLFRMMS-RADTVTWN 309
Query: 324 SFLAA 328
++
Sbjct: 310 CMISG 314
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/277 (21%), Positives = 113/277 (40%), Gaps = 44/277 (15%)
Query: 142 EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG-F 200
E P ++++ +L CS+ L GK H F++ N + ++ MYA CG F
Sbjct: 31 EETIPRRLSL--LLQACSNPNL--LRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSF 86
Query: 201 LKYALMVFELMEERNVI-SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLT 259
M + L R+ I W ++I G AL+ + M GV P+ TF ++
Sbjct: 87 SDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVK 146
Query: 260 AC--------------------------VHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC- 292
AC V + L+ +Y K ID L R+ C
Sbjct: 147 ACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGK-IDVPSKLFDRVLQKDCV 205
Query: 293 ----MVDLFGKAGFLE---EAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQA 345
M++ + K G L+ + + V+R ++ PN + + L+ C D+ ++
Sbjct: 206 IWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQL--HG 263
Query: 346 LRMVKPEN-DGGVFTLICDLYTMNEKWEGAERVRKLM 381
L +V + +G + + +Y+ +++ A ++ ++M
Sbjct: 264 LVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMM 300
>sp|Q9SY75|PPR30_ARATH Putative pentatricopeptide repeat-containing protein At1g10330
OS=Arabidopsis thaliana GN=PCMP-E71 PE=3 SV=1
Length = 467
Score = 236 bits (602), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 132/400 (33%), Positives = 226/400 (56%), Gaps = 7/400 (1%)
Query: 1 MQLFSQMHRQSVPSDSFSILHILKS-CTHFNNLTVIHHLHSHILKLGFISHVYVATSLLH 59
+ LF+ M V ++ + ++K+ C+ F+ ++ LH LK GF+ +V TS +
Sbjct: 71 LALFTHMLASHVQPNNLTFPSLIKAACSSFS-VSYGVALHGQALKRGFLWDPFVQTSFVR 129
Query: 60 EY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAM 118
Y V +RK+FD++ V N+++ ++G + A ++F+RMP+ +V SW+ +
Sbjct: 130 FYGEVGDLESSRKMFDDILNPCVVACNSLLDACGRNGEMDYAFEYFQRMPVTDVVSWTTV 189
Query: 119 IAAYLNAGAYDPGLKLFREMISNEG--LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176
I + G + L +F EMI NE +TP++ T +VLS C++ G+ +GK HG++
Sbjct: 190 INGFSKKGLHAKALMVFGEMIQNERAVITPNEATFVSVLSSCANFDQGGIRLGKQIHGYV 249
Query: 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236
+ E L + T L+DMY K G L+ AL +F+ + ++ V +W A+I A G + AL
Sbjct: 250 MSKEIILTTTLGTALLDMYGKAGDLEMALTIFDQIRDKKVCAWNAIISALASNGRPKQAL 309
Query: 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296
+FEMM+++ V PN +T +LTAC + LVD G + F I EY + P +HYGC+VDL
Sbjct: 310 EMFEMMKSSYVHPNGITLLAILTACARSKLVDLGIQLFSSICSEYKIIPTSEHYGCVVDL 369
Query: 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356
G+AG L +A I+++ EP+ + G+ L ACK H+ ++ V KQ + + +P++ G
Sbjct: 370 IGRAGLLVDAANFIQSLPFEPDASVLGALLGACKIHENTELGNTVGKQLIGL-QPQH-CG 427
Query: 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVIS 396
+ + ++ W AE++RK M+ +RK SV++
Sbjct: 428 QYVALSTFNALDSNWSEAEKMRKAMIEAGIRKIPAYSVLT 467
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 117/273 (42%), Gaps = 54/273 (19%)
Query: 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVL-SGCSHLGSVGLLMGKSAH 173
++ +I +YL G Y L LF M+++ + P+ +T +++ + CS S + G + H
Sbjct: 54 YNTLIRSYLTTGEYKTSLALFTHMLASH-VQPNNLTFPSLIKAACS---SFSVSYGVALH 109
Query: 174 GFIVKNEWELNEQIATILVDMYAKCGFLK------------------------------- 202
G +K + + + T V Y + G L+
Sbjct: 110 GQALKRGFLWDPFVQTSFVRFYGEVGDLESSRKMFDDILNPCVVACNSLLDACGRNGEMD 169
Query: 203 YALMVFELMEERNVISWTALICGSAHRGYSEDALSLF-EMMQ--ATGVKPNEMTFTGVLT 259
YA F+ M +V+SWT +I G + +G AL +F EM+Q + PNE TF VL+
Sbjct: 170 YAFEYFQRMPVTDVVSWTTVINGFSKKGLHAKALMVFGEMIQNERAVITPNEATFVSVLS 229
Query: 260 ACVHTGLVDEGRKYFKMIDEEYDLEPRI----QHYGCMVDLFGKAGFLEEAYEVIRTMRL 315
+C + D+G Y + I ++D++GKAG LE A + +R
Sbjct: 230 SCAN---FDQGGIRLGKQIHGYVMSKEIILTTTLGTALLDMYGKAGDLEMALTIFDQIR- 285
Query: 316 EPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348
+ V W + ++A + + KQAL M
Sbjct: 286 DKKVCAWNAIISALASNGR-------PKQALEM 311
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,697,821
Number of Sequences: 539616
Number of extensions: 5990809
Number of successful extensions: 19087
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 12921
Number of HSP's gapped (non-prelim): 2069
length of query: 400
length of database: 191,569,459
effective HSP length: 120
effective length of query: 280
effective length of database: 126,815,539
effective search space: 35508350920
effective search space used: 35508350920
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)