Query 048364
Match_columns 400
No_of_seqs 540 out of 1908
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 08:50:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048364.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048364hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 1.7E-65 3.6E-70 486.0 41.7 393 2-399 108-572 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 1.1E-62 2.5E-67 477.3 41.1 392 1-399 273-735 (857)
3 PLN03218 maturation of RBCL 1; 100.0 7.6E-61 1.6E-65 457.6 37.8 384 1-393 390-792 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 1.8E-60 3.9E-65 455.1 39.7 384 2-393 427-850 (1060)
5 PLN03077 Protein ECB2; Provisi 100.0 4.8E-59 1.1E-63 452.0 39.3 384 1-392 172-627 (857)
6 PLN03081 pentatricopeptide (PP 100.0 1.4E-57 2.9E-62 432.1 38.6 376 12-393 83-465 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-25 2.4E-30 223.0 40.2 358 15-382 498-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1E-24 2.2E-29 216.1 39.8 371 4-385 454-867 (899)
9 PRK11788 tetratricopeptide rep 99.9 1.8E-22 3.9E-27 180.5 29.9 291 93-392 47-355 (389)
10 PRK11788 tetratricopeptide rep 99.9 6.6E-22 1.4E-26 176.9 28.2 296 62-371 47-363 (389)
11 KOG4626 O-linked N-acetylgluco 99.9 5.7E-22 1.2E-26 171.3 23.7 357 14-383 114-484 (966)
12 TIGR00990 3a0801s09 mitochondr 99.9 5.9E-20 1.3E-24 172.8 36.1 356 19-384 130-571 (615)
13 PRK15174 Vi polysaccharide exp 99.9 5.6E-20 1.2E-24 172.5 35.0 325 17-351 43-383 (656)
14 KOG4626 O-linked N-acetylgluco 99.9 2.6E-20 5.7E-25 161.2 25.6 354 3-372 138-507 (966)
15 PRK11447 cellulose synthase su 99.9 8.9E-19 1.9E-23 175.4 36.5 346 23-383 276-699 (1157)
16 PRK15174 Vi polysaccharide exp 99.9 1.1E-18 2.4E-23 163.8 34.4 345 28-384 17-381 (656)
17 PRK11447 cellulose synthase su 99.9 6E-18 1.3E-22 169.5 39.0 370 3-387 291-744 (1157)
18 PRK10049 pgaA outer membrane p 99.8 3.2E-17 7E-22 157.2 38.6 189 193-383 245-455 (765)
19 TIGR00990 3a0801s09 mitochondr 99.8 5.9E-17 1.3E-21 152.6 33.6 328 11-349 155-572 (615)
20 PRK09782 bacteriophage N4 rece 99.8 1.5E-15 3.2E-20 146.5 40.6 187 192-384 516-706 (987)
21 PRK10049 pgaA outer membrane p 99.8 4.8E-16 1E-20 149.3 37.4 335 13-356 46-462 (765)
22 PRK14574 hmsH outer membrane p 99.8 7.7E-15 1.7E-19 138.8 39.1 346 27-381 45-476 (822)
23 PRK14574 hmsH outer membrane p 99.8 1.3E-14 2.9E-19 137.2 36.6 352 21-383 73-512 (822)
24 PRK09782 bacteriophage N4 rece 99.8 1.6E-14 3.5E-19 139.4 37.2 361 11-386 337-742 (987)
25 KOG4422 Uncharacterized conser 99.7 4.5E-14 9.6E-19 117.9 29.0 353 28-386 127-592 (625)
26 PF13429 TPR_15: Tetratricopep 99.7 1.2E-16 2.6E-21 135.7 11.4 256 118-382 14-275 (280)
27 KOG2076 RNA polymerase III tra 99.7 3.5E-13 7.6E-18 122.4 29.3 314 62-383 151-511 (895)
28 KOG2002 TPR-containing nuclear 99.7 1.5E-13 3.3E-18 125.6 26.8 115 267-383 628-744 (1018)
29 PRK10747 putative protoheme IX 99.7 2.7E-13 5.8E-18 120.5 27.6 276 62-348 96-390 (398)
30 KOG1126 DNA-binding cell divis 99.7 4.6E-14 9.9E-19 124.1 21.7 272 66-349 335-621 (638)
31 KOG0495 HAT repeat protein [RN 99.6 4.3E-12 9.4E-17 111.6 33.2 358 24-397 524-891 (913)
32 PRK10747 putative protoheme IX 99.6 1.1E-12 2.4E-17 116.5 30.7 276 93-383 96-389 (398)
33 KOG1126 DNA-binding cell divis 99.6 4.3E-14 9.3E-19 124.3 20.3 279 94-385 332-621 (638)
34 KOG1915 Cell cycle control pro 99.6 4.4E-12 9.4E-17 107.5 30.5 357 27-394 84-510 (677)
35 KOG2003 TPR repeat-containing 99.6 1.1E-12 2.3E-17 110.6 26.7 203 160-370 502-709 (840)
36 PF13429 TPR_15: Tetratricopep 99.6 2.4E-15 5.2E-20 127.7 11.2 252 21-277 13-274 (280)
37 KOG1155 Anaphase-promoting com 99.6 4.5E-12 9.8E-17 107.1 29.7 313 62-383 176-494 (559)
38 TIGR00540 hemY_coli hemY prote 99.6 2.8E-12 6.1E-17 114.6 30.3 279 62-347 96-398 (409)
39 TIGR00540 hemY_coli hemY prote 99.6 1.6E-12 3.6E-17 116.1 28.4 287 19-313 85-396 (409)
40 KOG2076 RNA polymerase III tra 99.6 5.3E-12 1.1E-16 114.9 30.7 354 24-384 147-555 (895)
41 KOG4422 Uncharacterized conser 99.6 4.5E-11 9.8E-16 100.3 33.6 360 13-378 204-619 (625)
42 KOG2002 TPR-containing nuclear 99.6 1.8E-12 3.8E-17 118.8 27.3 365 16-386 307-711 (1018)
43 KOG0547 Translocase of outer m 99.6 7E-12 1.5E-16 106.7 28.9 353 19-382 118-564 (606)
44 COG2956 Predicted N-acetylgluc 99.6 2.3E-12 5.1E-17 103.9 24.4 291 57-391 42-354 (389)
45 COG3071 HemY Uncharacterized e 99.6 2.8E-11 6.2E-16 100.6 28.3 277 62-349 96-391 (400)
46 KOG1155 Anaphase-promoting com 99.5 1.2E-10 2.7E-15 98.6 31.0 359 13-384 161-536 (559)
47 KOG2003 TPR repeat-containing 99.5 2.4E-11 5.3E-16 102.6 25.8 254 121-383 428-688 (840)
48 TIGR02521 type_IV_pilW type IV 99.5 7.9E-12 1.7E-16 103.4 22.8 199 182-383 28-231 (234)
49 KOG1915 Cell cycle control pro 99.5 6.8E-10 1.5E-14 94.5 33.8 363 15-384 106-536 (677)
50 KOG4318 Bicoid mRNA stability 99.5 1.1E-11 2.4E-16 112.6 23.6 246 2-266 11-286 (1088)
51 COG2956 Predicted N-acetylgluc 99.5 1.1E-10 2.5E-15 94.4 26.3 293 18-349 38-348 (389)
52 KOG1840 Kinesin light chain [C 99.5 2.8E-11 6E-16 107.6 24.7 194 189-383 245-478 (508)
53 COG3071 HemY Uncharacterized e 99.5 4.1E-10 9E-15 93.9 28.1 290 87-389 88-395 (400)
54 KOG0495 HAT repeat protein [RN 99.5 1.4E-09 3E-14 96.3 32.0 355 26-395 416-791 (913)
55 KOG1173 Anaphase-promoting com 99.4 1.1E-09 2.4E-14 95.2 27.7 262 111-383 243-517 (611)
56 PF13041 PPR_2: PPR repeat fam 99.4 7E-13 1.5E-17 79.6 5.9 50 214-263 1-50 (50)
57 KOG0547 Translocase of outer m 99.4 3.2E-10 7E-15 96.8 22.9 290 85-383 119-490 (606)
58 PF13041 PPR_2: PPR repeat fam 99.4 1.4E-12 3E-17 78.4 5.6 50 110-160 1-50 (50)
59 PRK12370 invasion protein regu 99.4 1E-09 2.3E-14 102.0 26.2 261 111-385 255-536 (553)
60 TIGR02521 type_IV_pilW type IV 99.3 6.2E-10 1.3E-14 92.0 22.5 196 112-348 31-232 (234)
61 KOG1129 TPR repeat-containing 99.3 1.8E-10 3.9E-15 93.4 16.6 226 116-349 227-459 (478)
62 KOG4318 Bicoid mRNA stability 99.3 1.4E-10 3.1E-15 105.6 17.4 232 141-393 18-274 (1088)
63 KOG4162 Predicted calmodulin-b 99.3 2.7E-08 5.9E-13 89.9 30.4 373 3-384 310-783 (799)
64 PRK12370 invasion protein regu 99.3 8.5E-10 1.8E-14 102.6 21.9 256 80-349 255-536 (553)
65 KOG1840 Kinesin light chain [C 99.3 4.6E-09 9.9E-14 93.7 24.7 239 53-347 201-478 (508)
66 KOG1156 N-terminal acetyltrans 99.2 8.1E-08 1.8E-12 85.3 30.1 361 16-386 41-470 (700)
67 COG3063 PilF Tfp pilus assembl 99.2 1.2E-09 2.7E-14 84.4 16.4 194 186-382 36-234 (250)
68 KOG1129 TPR repeat-containing 99.2 4.2E-10 9.2E-15 91.3 14.3 223 152-383 227-457 (478)
69 KOG1173 Anaphase-promoting com 99.2 1.3E-08 2.9E-13 88.7 23.5 272 50-330 243-533 (611)
70 KOG3785 Uncharacterized conser 99.2 1.1E-08 2.4E-13 84.2 21.5 353 24-385 65-491 (557)
71 KOG2376 Signal recognition par 99.2 1.1E-07 2.4E-12 83.5 28.6 346 19-379 15-400 (652)
72 COG3063 PilF Tfp pilus assembl 99.2 8.3E-09 1.8E-13 80.0 19.3 194 151-349 38-237 (250)
73 PRK11189 lipoprotein NlpI; Pro 99.2 2.1E-09 4.6E-14 91.7 18.0 220 121-351 35-267 (296)
74 PRK11189 lipoprotein NlpI; Pro 99.2 2.8E-08 6E-13 84.8 24.0 91 186-278 65-159 (296)
75 PF12569 NARP1: NMDA receptor- 99.2 5.6E-08 1.2E-12 87.9 26.3 123 220-347 198-333 (517)
76 PF12569 NARP1: NMDA receptor- 99.2 5E-08 1.1E-12 88.2 25.5 127 253-383 196-333 (517)
77 PF04733 Coatomer_E: Coatomer 99.2 7.1E-10 1.5E-14 93.2 12.7 247 89-351 9-267 (290)
78 PF04733 Coatomer_E: Coatomer 99.1 8E-09 1.7E-13 86.9 18.3 217 85-313 39-262 (290)
79 KOG2376 Signal recognition par 99.1 2.4E-06 5.1E-11 75.5 32.8 361 13-382 43-518 (652)
80 KOG1156 N-terminal acetyltrans 99.1 1.3E-06 2.8E-11 77.9 30.4 359 13-385 4-435 (700)
81 KOG1174 Anaphase-promoting com 99.1 1.6E-07 3.4E-12 79.1 23.4 153 193-349 342-501 (564)
82 KOG2047 mRNA splicing factor [ 99.0 3.8E-06 8.3E-11 75.0 31.4 355 26-388 112-582 (835)
83 KOG4340 Uncharacterized conser 99.0 8.6E-07 1.9E-11 71.6 25.1 356 15-383 43-442 (459)
84 KOG0624 dsRNA-activated protei 99.0 5.1E-07 1.1E-11 74.3 24.2 289 50-349 37-371 (504)
85 cd05804 StaR_like StaR_like; a 99.0 9.1E-07 2E-11 78.3 27.8 199 186-384 115-336 (355)
86 KOG1174 Anaphase-promoting com 99.0 9.6E-07 2.1E-11 74.6 25.0 261 109-384 229-500 (564)
87 KOG4340 Uncharacterized conser 99.0 2.7E-07 5.8E-12 74.5 20.1 186 53-248 12-210 (459)
88 cd05804 StaR_like StaR_like; a 99.0 4.1E-06 8.9E-11 74.1 30.2 293 18-349 8-337 (355)
89 KOG1125 TPR repeat-containing 99.0 2.8E-08 6.1E-13 87.0 14.9 218 159-383 296-526 (579)
90 KOG3081 Vesicle coat complex C 98.9 4.9E-07 1.1E-11 71.9 19.6 138 224-373 116-259 (299)
91 PRK04841 transcriptional regul 98.9 5.5E-06 1.2E-10 82.9 31.6 320 62-384 386-760 (903)
92 KOG2047 mRNA splicing factor [ 98.9 1.1E-05 2.5E-10 72.1 27.5 332 51-386 102-508 (835)
93 KOG0548 Molecular co-chaperone 98.9 1.4E-06 3.1E-11 75.9 21.6 98 24-122 10-114 (539)
94 TIGR03302 OM_YfiO outer membra 98.9 2.7E-07 5.9E-12 76.3 16.7 184 182-384 30-232 (235)
95 KOG3081 Vesicle coat complex C 98.8 3E-06 6.4E-11 67.5 20.8 247 91-351 18-273 (299)
96 KOG4162 Predicted calmodulin-b 98.8 3.2E-05 6.8E-10 70.7 29.3 93 291-385 654-750 (799)
97 KOG0624 dsRNA-activated protei 98.8 1.1E-05 2.4E-10 66.7 24.1 295 15-318 37-373 (504)
98 PRK10370 formate-dependent nit 98.8 3E-07 6.6E-12 73.1 14.8 148 192-351 23-175 (198)
99 TIGR03302 OM_YfiO outer membra 98.8 1.6E-06 3.5E-11 71.7 19.6 180 147-349 32-233 (235)
100 PF12854 PPR_1: PPR repeat 98.8 7E-09 1.5E-13 55.8 2.8 33 10-42 1-33 (34)
101 PRK14720 transcript cleavage f 98.8 2.5E-06 5.3E-11 81.3 21.3 233 80-366 30-268 (906)
102 PF12854 PPR_1: PPR repeat 98.8 1.7E-08 3.6E-13 54.3 4.2 32 246-277 2-33 (34)
103 KOG3617 WD40 and TPR repeat-co 98.7 1.9E-05 4.2E-10 72.7 25.7 172 184-382 911-1107(1416)
104 COG5010 TadD Flp pilus assembl 98.7 3.4E-06 7.4E-11 67.2 18.1 155 220-379 70-226 (257)
105 KOG1070 rRNA processing protei 98.7 5.7E-06 1.2E-10 80.1 22.5 224 149-375 1459-1691(1710)
106 PRK10370 formate-dependent nit 98.7 3.9E-06 8.5E-11 66.8 18.6 148 223-386 23-175 (198)
107 KOG1070 rRNA processing protei 98.7 2.4E-06 5.3E-11 82.5 20.0 200 184-389 1457-1668(1710)
108 PLN02789 farnesyltranstransfer 98.7 7.2E-06 1.6E-10 70.2 21.3 223 114-381 39-299 (320)
109 PRK15359 type III secretion sy 98.7 1E-06 2.3E-11 66.2 14.5 108 254-365 27-136 (144)
110 PRK04841 transcriptional regul 98.7 8.9E-05 1.9E-09 74.3 32.1 292 89-384 382-720 (903)
111 KOG3616 Selective LIM binding 98.7 7.7E-06 1.7E-10 74.3 21.0 166 157-343 741-906 (1636)
112 PRK15179 Vi polysaccharide bio 98.7 5.2E-06 1.1E-10 78.3 20.7 131 215-349 85-218 (694)
113 PRK15359 type III secretion sy 98.7 5E-07 1.1E-11 68.0 11.5 107 271-384 13-121 (144)
114 KOG0985 Vesicle coat protein c 98.7 0.00018 3.8E-09 68.1 29.4 242 112-381 1104-1367(1666)
115 KOG3616 Selective LIM binding 98.7 4.2E-06 9.1E-11 76.0 18.6 165 192-378 739-905 (1636)
116 KOG1128 Uncharacterized conser 98.6 1.6E-06 3.5E-11 78.4 15.5 211 118-348 404-616 (777)
117 KOG1125 TPR repeat-containing 98.6 3E-06 6.5E-11 74.7 16.4 247 121-376 294-563 (579)
118 KOG1128 Uncharacterized conser 98.6 7.6E-06 1.7E-10 74.2 18.9 195 181-386 394-618 (777)
119 KOG3617 WD40 and TPR repeat-co 98.6 0.00012 2.6E-09 67.7 25.2 159 27-212 811-994 (1416)
120 PRK14720 transcript cleavage f 98.5 3.8E-05 8.2E-10 73.5 22.6 110 15-139 30-143 (906)
121 KOG0985 Vesicle coat protein c 98.5 0.00018 3.8E-09 68.1 25.8 250 64-338 1089-1373(1666)
122 KOG1127 TPR repeat-containing 98.5 2.4E-05 5.3E-10 73.5 19.8 154 18-178 494-658 (1238)
123 KOG3785 Uncharacterized conser 98.5 0.00043 9.3E-09 57.9 26.8 314 56-392 156-522 (557)
124 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 4.6E-06 9.9E-11 72.8 14.3 123 253-382 171-295 (395)
125 KOG0548 Molecular co-chaperone 98.5 0.00048 1E-08 60.7 26.1 336 13-366 33-471 (539)
126 COG4783 Putative Zn-dependent 98.5 4.5E-05 9.7E-10 66.3 18.9 117 261-381 316-434 (484)
127 TIGR02552 LcrH_SycD type III s 98.4 5E-06 1.1E-10 62.1 11.4 95 253-349 19-115 (135)
128 COG5010 TadD Flp pilus assembl 98.4 3.4E-05 7.4E-10 61.6 16.0 127 255-385 70-198 (257)
129 PRK15179 Vi polysaccharide bio 98.4 0.00014 2.9E-09 69.0 22.7 161 180-349 81-246 (694)
130 PLN02789 farnesyltranstransfer 98.4 6.1E-05 1.3E-09 64.5 18.3 193 187-384 39-250 (320)
131 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 2.1E-05 4.6E-10 68.7 15.5 128 185-315 169-296 (395)
132 PF09976 TPR_21: Tetratricopep 98.3 2.2E-05 4.8E-10 59.3 13.0 124 254-381 15-144 (145)
133 COG4783 Putative Zn-dependent 98.3 0.00025 5.4E-09 61.9 20.5 115 227-346 317-435 (484)
134 TIGR00756 PPR pentatricopeptid 98.3 1.2E-06 2.5E-11 47.9 4.5 34 217-250 1-34 (35)
135 TIGR02552 LcrH_SycD type III s 98.3 4.1E-05 8.8E-10 57.2 13.8 95 288-384 18-114 (135)
136 KOG1914 mRNA cleavage and poly 98.3 0.0022 4.7E-08 56.9 29.6 125 13-139 17-164 (656)
137 KOG3060 Uncharacterized conser 98.3 0.00013 2.9E-09 57.9 16.5 184 197-386 24-222 (289)
138 KOG3060 Uncharacterized conser 98.3 0.00024 5.1E-09 56.6 17.8 171 187-362 54-232 (289)
139 PF13812 PPR_3: Pentatricopept 98.3 1.9E-06 4.2E-11 46.7 4.2 33 217-249 2-34 (34)
140 PRK15363 pathogenicity island 98.3 1.5E-05 3.3E-10 59.1 9.9 97 287-385 35-133 (157)
141 KOG1127 TPR repeat-containing 98.2 0.00059 1.3E-08 64.7 21.9 176 186-367 493-676 (1238)
142 TIGR02795 tol_pal_ybgF tol-pal 98.2 4.9E-05 1.1E-09 55.2 12.4 97 254-351 5-107 (119)
143 PF09976 TPR_21: Tetratricopep 98.2 0.00014 3E-09 55.0 14.7 116 229-345 24-144 (145)
144 TIGR00756 PPR pentatricopeptid 98.2 2.1E-06 4.6E-11 46.8 3.5 35 113-148 1-35 (35)
145 PF13812 PPR_3: Pentatricopept 98.2 2.7E-06 5.9E-11 46.0 3.8 34 16-49 1-34 (34)
146 cd00189 TPR Tetratricopeptide 98.2 2.8E-05 6.2E-10 53.6 10.2 92 290-383 3-96 (100)
147 PF12895 Apc3: Anaphase-promot 98.2 3E-06 6.5E-11 57.2 4.8 76 301-379 3-82 (84)
148 PF04840 Vps16_C: Vps16, C-ter 98.2 0.003 6.6E-08 54.1 23.7 102 222-341 183-284 (319)
149 KOG2053 Mitochondrial inherita 98.1 0.0083 1.8E-07 56.6 31.4 65 322-388 439-506 (932)
150 PF12895 Apc3: Anaphase-promot 98.1 1.3E-05 2.9E-10 54.0 6.5 80 265-344 3-83 (84)
151 TIGR02795 tol_pal_ybgF tol-pal 98.1 6.8E-05 1.5E-09 54.5 10.8 97 288-385 3-106 (119)
152 PF14938 SNAP: Soluble NSF att 98.0 0.00072 1.6E-08 57.5 17.4 89 190-278 119-223 (282)
153 PF14938 SNAP: Soluble NSF att 98.0 0.0017 3.7E-08 55.2 18.9 115 187-313 96-222 (282)
154 PF01535 PPR: PPR repeat; Int 98.0 1.1E-05 2.4E-10 42.5 3.6 30 218-247 2-31 (31)
155 PF07079 DUF1347: Protein of u 98.0 0.011 2.3E-07 51.6 26.7 112 267-383 396-523 (549)
156 PF13414 TPR_11: TPR repeat; P 97.9 4.1E-05 8.8E-10 49.4 6.5 64 318-383 2-66 (69)
157 cd00189 TPR Tetratricopeptide 97.9 0.00019 4E-09 49.4 10.3 91 257-349 6-98 (100)
158 PLN03088 SGT1, suppressor of 97.9 7.7E-05 1.7E-09 65.4 9.8 104 257-364 8-113 (356)
159 PF10037 MRP-S27: Mitochondria 97.9 0.00034 7.4E-09 61.7 13.5 122 246-368 61-186 (429)
160 PRK10866 outer membrane biogen 97.9 0.0057 1.2E-07 50.5 19.9 177 188-382 35-239 (243)
161 PRK02603 photosystem I assembl 97.9 0.00024 5.2E-09 55.4 11.1 78 290-369 38-120 (172)
162 PLN03088 SGT1, suppressor of 97.9 0.00037 7.9E-09 61.2 13.3 102 222-326 8-110 (356)
163 PF13432 TPR_16: Tetratricopep 97.9 4.8E-05 1E-09 48.4 5.6 56 326-383 4-59 (65)
164 PF08579 RPM2: Mitochondrial r 97.8 0.00023 5E-09 49.2 8.8 78 221-299 30-116 (120)
165 CHL00033 ycf3 photosystem I as 97.8 0.00027 6E-09 54.9 10.7 95 286-382 34-140 (168)
166 COG4235 Cytochrome c biogenesi 97.8 0.00042 9.1E-09 57.0 11.8 110 284-395 153-267 (287)
167 KOG0553 TPR repeat-containing 97.8 7.7E-05 1.7E-09 60.9 7.4 98 260-362 90-190 (304)
168 PRK02603 photosystem I assembl 97.8 0.00081 1.8E-08 52.5 13.2 114 217-351 36-151 (172)
169 KOG0550 Molecular chaperone (D 97.8 0.00087 1.9E-08 57.3 13.8 157 224-388 177-354 (486)
170 PRK15363 pathogenicity island 97.8 0.0021 4.6E-08 48.0 14.2 90 190-280 40-132 (157)
171 PF01535 PPR: PPR repeat; Int 97.8 2.9E-05 6.3E-10 40.8 3.2 31 17-47 1-31 (31)
172 KOG2053 Mitochondrial inherita 97.8 0.014 3E-07 55.2 22.0 55 296-351 199-257 (932)
173 KOG1914 mRNA cleavage and poly 97.8 0.026 5.6E-07 50.4 29.0 365 13-383 50-500 (656)
174 COG4700 Uncharacterized protei 97.8 0.0074 1.6E-07 46.0 16.3 128 247-378 85-216 (251)
175 PF13432 TPR_16: Tetratricopep 97.8 0.00019 4.1E-09 45.6 7.1 58 293-351 3-62 (65)
176 PRK10153 DNA-binding transcrip 97.7 0.0018 4E-08 59.5 15.7 135 214-351 335-484 (517)
177 PF14559 TPR_19: Tetratricopep 97.7 6.9E-05 1.5E-09 48.1 4.8 51 331-383 3-53 (68)
178 PF05843 Suf: Suppressor of fo 97.7 0.00061 1.3E-08 57.7 11.7 143 217-365 2-150 (280)
179 KOG0553 TPR repeat-containing 97.7 0.00049 1.1E-08 56.4 10.5 150 224-383 89-244 (304)
180 PF05843 Suf: Suppressor of fo 97.7 0.0016 3.5E-08 55.1 14.3 143 186-329 2-150 (280)
181 COG4700 Uncharacterized protei 97.7 0.013 2.8E-07 44.8 16.5 133 214-346 87-220 (251)
182 PF10037 MRP-S27: Mitochondria 97.7 0.00076 1.6E-08 59.6 11.8 115 146-262 64-184 (429)
183 PF13281 DUF4071: Domain of un 97.6 0.012 2.5E-07 51.1 18.0 166 185-355 141-339 (374)
184 PF13414 TPR_11: TPR repeat; P 97.6 0.00026 5.6E-09 45.6 6.4 64 286-349 2-68 (69)
185 PRK10153 DNA-binding transcrip 97.6 0.004 8.6E-08 57.3 15.4 133 246-384 332-482 (517)
186 CHL00033 ycf3 photosystem I as 97.6 0.0018 3.9E-08 50.3 11.5 60 219-278 38-99 (168)
187 KOG1130 Predicted G-alpha GTPa 97.5 0.0023 5E-08 54.9 12.2 131 217-347 196-343 (639)
188 PF14559 TPR_19: Tetratricopep 97.5 0.00042 9.1E-09 44.4 6.4 48 264-313 4-51 (68)
189 KOG2796 Uncharacterized conser 97.5 0.0059 1.3E-07 49.2 13.7 25 52-76 70-95 (366)
190 PF13371 TPR_9: Tetratricopept 97.5 0.00031 6.7E-09 45.8 5.8 55 327-383 3-57 (73)
191 PF12688 TPR_5: Tetratrico pep 97.5 0.0069 1.5E-07 43.5 12.7 108 222-330 7-117 (120)
192 PF08579 RPM2: Mitochondrial r 97.5 0.0015 3.3E-08 45.2 8.8 80 115-197 28-116 (120)
193 PF12688 TPR_5: Tetratrico pep 97.5 0.0032 6.9E-08 45.2 10.9 92 257-349 7-105 (120)
194 PRK10866 outer membrane biogen 97.5 0.041 8.9E-07 45.5 19.2 50 90-139 41-96 (243)
195 KOG2041 WD40 repeat protein [G 97.5 0.088 1.9E-06 48.8 24.4 121 13-139 689-823 (1189)
196 KOG1130 Predicted G-alpha GTPa 97.5 0.00061 1.3E-08 58.2 7.8 133 252-384 196-344 (639)
197 KOG2280 Vacuolar assembly/sort 97.5 0.098 2.1E-06 48.8 22.3 131 8-139 424-573 (829)
198 PRK10803 tol-pal system protei 97.4 0.002 4.3E-08 53.6 10.0 96 254-349 146-247 (263)
199 PF06239 ECSIT: Evolutionarily 97.3 0.0019 4.2E-08 50.6 8.8 58 206-263 35-99 (228)
200 COG3898 Uncharacterized membra 97.3 0.082 1.8E-06 45.5 26.6 118 29-147 97-223 (531)
201 KOG2280 Vacuolar assembly/sort 97.3 0.14 3E-06 47.9 26.9 316 44-380 425-795 (829)
202 PF03704 BTAD: Bacterial trans 97.3 0.00078 1.7E-08 51.0 6.6 70 321-392 64-138 (146)
203 PRK15331 chaperone protein Sic 97.3 0.0032 6.9E-08 47.3 9.1 84 262-347 48-133 (165)
204 PF13424 TPR_12: Tetratricopep 97.3 0.001 2.2E-08 44.0 6.0 58 289-346 7-73 (78)
205 KOG1538 Uncharacterized conser 97.3 0.071 1.5E-06 48.9 18.5 91 209-313 740-830 (1081)
206 COG4235 Cytochrome c biogenesi 97.2 0.025 5.4E-07 46.9 14.4 101 248-351 153-258 (287)
207 PF13525 YfiO: Outer membrane 97.2 0.058 1.3E-06 43.3 16.2 167 190-375 10-198 (203)
208 PRK10803 tol-pal system protei 97.2 0.013 2.8E-07 48.9 12.7 94 289-383 145-245 (263)
209 KOG1538 Uncharacterized conser 97.2 0.019 4.2E-07 52.3 14.2 85 150-245 749-846 (1081)
210 PF13371 TPR_9: Tetratricopept 97.1 0.0031 6.6E-08 41.0 7.1 56 295-351 3-60 (73)
211 PF04840 Vps16_C: Vps16, C-ter 97.1 0.14 3E-06 44.1 25.5 112 252-382 178-289 (319)
212 COG3898 Uncharacterized membra 97.1 0.14 3.1E-06 44.1 20.3 254 12-279 114-391 (531)
213 KOG2796 Uncharacterized conser 97.1 0.085 1.8E-06 42.8 15.4 133 217-351 178-317 (366)
214 PF13281 DUF4071: Domain of un 97.1 0.18 4E-06 43.9 18.7 166 219-385 144-335 (374)
215 KOG2041 WD40 repeat protein [G 97.0 0.28 6E-06 45.7 20.3 185 29-244 747-951 (1189)
216 PF13424 TPR_12: Tetratricopep 97.0 0.0015 3.3E-08 43.2 4.8 65 319-383 5-74 (78)
217 PF12921 ATP13: Mitochondrial 97.0 0.011 2.3E-07 43.0 9.2 51 247-297 48-98 (126)
218 PF13525 YfiO: Outer membrane 97.0 0.017 3.6E-07 46.4 11.3 56 87-142 11-72 (203)
219 PF06239 ECSIT: Evolutionarily 97.0 0.012 2.6E-07 46.4 9.8 87 111-200 46-153 (228)
220 PF12921 ATP13: Mitochondrial 96.9 0.013 2.8E-07 42.6 9.2 46 282-327 47-96 (126)
221 PF09205 DUF1955: Domain of un 96.8 0.1 2.3E-06 37.5 13.1 141 226-387 12-152 (161)
222 PF13428 TPR_14: Tetratricopep 96.8 0.0047 1E-07 35.4 4.8 41 321-363 3-43 (44)
223 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.0086 1.9E-07 52.7 8.2 98 285-387 73-177 (453)
224 KOG1258 mRNA processing protei 96.7 0.48 1E-05 43.4 25.1 333 27-369 90-489 (577)
225 KOG0543 FKBP-type peptidyl-pro 96.7 0.058 1.3E-06 46.6 12.4 95 287-383 257-354 (397)
226 KOG0550 Molecular chaperone (D 96.6 0.42 9.1E-06 41.7 20.7 85 226-313 259-347 (486)
227 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.018 3.8E-07 50.9 9.3 97 249-350 73-176 (453)
228 PF03704 BTAD: Bacterial trans 96.6 0.012 2.7E-07 44.4 7.6 54 258-313 69-122 (146)
229 PRK11619 lytic murein transgly 96.5 0.78 1.7E-05 43.9 28.6 97 65-164 81-179 (644)
230 COG5107 RNA14 Pre-mRNA 3'-end 96.5 0.52 1.1E-05 41.6 26.1 131 217-351 398-533 (660)
231 KOG1920 IkappaB kinase complex 96.5 0.31 6.8E-06 48.1 17.2 77 191-275 971-1050(1265)
232 PF07035 Mic1: Colon cancer-as 96.4 0.1 2.2E-06 39.8 11.1 130 4-138 17-146 (167)
233 PF13431 TPR_17: Tetratricopep 96.4 0.0032 6.8E-08 33.7 2.1 32 342-375 2-33 (34)
234 PF10300 DUF3808: Protein of u 96.3 0.36 7.8E-06 44.3 16.2 163 218-385 190-377 (468)
235 KOG1941 Acetylcholine receptor 96.2 0.064 1.4E-06 45.6 9.7 164 218-381 85-272 (518)
236 KOG0543 FKBP-type peptidyl-pro 96.2 0.033 7.1E-07 48.1 8.1 63 319-383 257-319 (397)
237 KOG2610 Uncharacterized conser 96.1 0.23 4.9E-06 42.0 12.6 152 228-382 115-274 (491)
238 PF13512 TPR_18: Tetratricopep 96.1 0.35 7.6E-06 35.7 12.1 52 262-313 21-73 (142)
239 PRK15331 chaperone protein Sic 96.1 0.26 5.6E-06 37.3 11.6 86 225-313 46-131 (165)
240 COG1729 Uncharacterized protei 96.0 0.15 3.3E-06 41.8 10.9 97 253-351 144-246 (262)
241 PF04053 Coatomer_WDAD: Coatom 95.9 0.39 8.4E-06 43.5 14.1 156 26-210 271-427 (443)
242 KOG1941 Acetylcholine receptor 95.8 0.19 4.1E-06 42.9 10.9 164 113-278 84-273 (518)
243 COG1729 Uncharacterized protei 95.8 0.15 3.2E-06 41.9 10.1 86 228-313 153-241 (262)
244 COG4649 Uncharacterized protei 95.8 0.37 8E-06 36.6 11.3 124 226-349 68-197 (221)
245 PF04053 Coatomer_WDAD: Coatom 95.8 0.32 6.9E-06 44.1 13.2 157 193-381 269-428 (443)
246 PF08631 SPO22: Meiosis protei 95.8 0.98 2.1E-05 38.4 15.6 24 326-349 128-151 (278)
247 PF13512 TPR_18: Tetratricopep 95.8 0.35 7.6E-06 35.7 11.0 74 292-366 15-93 (142)
248 COG3118 Thioredoxin domain-con 95.8 0.98 2.1E-05 37.7 16.6 149 224-374 142-291 (304)
249 KOG1920 IkappaB kinase complex 95.7 2.7 5.7E-05 42.1 19.3 90 248-347 932-1027(1265)
250 smart00299 CLH Clathrin heavy 95.6 0.67 1.5E-05 34.5 13.4 128 16-159 7-136 (140)
251 PF10300 DUF3808: Protein of u 95.4 1.2 2.6E-05 41.0 15.8 159 188-348 191-376 (468)
252 KOG1585 Protein required for f 95.4 0.96 2.1E-05 36.6 12.7 114 263-378 122-250 (308)
253 COG4105 ComL DNA uptake lipopr 95.4 1.3 2.7E-05 36.3 16.4 68 91-159 44-117 (254)
254 KOG3941 Intermediate in Toll s 95.3 0.14 3E-06 42.1 8.3 98 205-303 54-174 (406)
255 PF04184 ST7: ST7 protein; In 95.3 1.1 2.3E-05 40.4 14.2 74 290-363 262-339 (539)
256 PRK11906 transcriptional regul 95.3 0.49 1.1E-05 42.2 12.2 160 217-380 252-432 (458)
257 KOG4555 TPR repeat-containing 95.3 0.15 3.1E-06 36.7 7.3 88 260-349 52-145 (175)
258 COG3118 Thioredoxin domain-con 95.2 1.5 3.3E-05 36.6 14.5 121 259-384 142-265 (304)
259 KOG1585 Protein required for f 95.2 1.3 2.9E-05 35.9 13.8 145 186-343 92-251 (308)
260 smart00299 CLH Clathrin heavy 95.1 0.98 2.1E-05 33.7 15.9 129 217-367 8-137 (140)
261 PRK09687 putative lyase; Provi 95.1 1.9 4E-05 36.6 26.1 82 77-161 33-118 (280)
262 COG0457 NrfG FOG: TPR repeat [ 95.0 1.5 3.3E-05 35.5 22.5 165 184-351 94-267 (291)
263 PF04184 ST7: ST7 protein; In 95.0 0.8 1.7E-05 41.2 12.6 152 222-386 174-326 (539)
264 PF10602 RPN7: 26S proteasome 95.0 0.88 1.9E-05 35.5 11.8 94 218-313 38-139 (177)
265 KOG2610 Uncharacterized conser 95.0 0.43 9.2E-06 40.4 10.3 116 263-382 115-236 (491)
266 PF07079 DUF1347: Protein of u 94.9 2.6 5.7E-05 37.5 24.6 132 27-158 17-177 (549)
267 KOG4555 TPR repeat-containing 94.8 0.48 1E-05 34.2 8.8 89 224-313 51-141 (175)
268 COG5107 RNA14 Pre-mRNA 3'-end 94.8 2.8 6.1E-05 37.3 27.8 130 252-382 398-529 (660)
269 COG3629 DnrI DNA-binding trans 94.8 0.17 3.7E-06 42.2 7.6 60 288-347 154-215 (280)
270 PF02259 FAT: FAT domain; Int 94.7 2.8 6E-05 37.0 16.0 70 317-386 144-215 (352)
271 COG0457 NrfG FOG: TPR repeat [ 94.5 2.1 4.6E-05 34.6 24.5 195 185-383 59-264 (291)
272 PF00637 Clathrin: Region in C 94.5 0.085 1.8E-06 39.6 4.9 128 21-163 12-140 (143)
273 PF10602 RPN7: 26S proteasome 94.1 0.7 1.5E-05 36.1 9.4 94 288-381 37-139 (177)
274 KOG2114 Vacuolar assembly/sort 94.1 3.3 7.2E-05 39.8 14.9 141 193-345 376-516 (933)
275 COG2976 Uncharacterized protei 94.1 0.93 2E-05 35.3 9.6 86 260-349 98-189 (207)
276 COG4649 Uncharacterized protei 94.1 1.7 3.8E-05 33.2 10.7 127 185-313 59-193 (221)
277 KOG4234 TPR repeat-containing 94.1 0.33 7.2E-06 37.8 7.2 99 260-362 104-209 (271)
278 PF13428 TPR_14: Tetratricopep 94.0 0.14 3.1E-06 29.1 4.1 38 17-55 2-39 (44)
279 PF07035 Mic1: Colon cancer-as 93.9 1.9 4.2E-05 33.0 11.0 100 36-139 14-116 (167)
280 PF13176 TPR_7: Tetratricopept 93.9 0.17 3.6E-06 27.3 4.1 23 322-344 2-24 (36)
281 PF08631 SPO22: Meiosis protei 93.9 3.6 7.8E-05 35.0 21.7 14 366-379 257-270 (278)
282 PF13176 TPR_7: Tetratricopept 93.8 0.08 1.7E-06 28.6 2.7 27 357-383 1-27 (36)
283 KOG3941 Intermediate in Toll s 93.8 0.52 1.1E-05 38.9 8.2 32 169-200 142-173 (406)
284 COG4105 ComL DNA uptake lipopr 93.7 3.3 7.2E-05 34.0 18.4 55 325-381 173-230 (254)
285 PF07719 TPR_2: Tetratricopept 93.6 0.3 6.5E-06 25.6 4.8 29 321-349 3-31 (34)
286 PF00515 TPR_1: Tetratricopept 93.6 0.27 5.8E-06 25.9 4.5 30 320-349 2-31 (34)
287 PF02284 COX5A: Cytochrome c o 93.2 0.77 1.7E-05 31.4 7.0 60 234-295 28-87 (108)
288 PF13170 DUF4003: Protein of u 93.1 2.8 6E-05 35.9 11.9 94 201-297 119-227 (297)
289 COG4785 NlpI Lipoprotein NlpI, 92.9 2.8 6.1E-05 33.4 10.6 29 217-245 100-128 (297)
290 PF09205 DUF1955: Domain of un 92.7 2.8 6.2E-05 30.4 13.4 137 195-350 12-151 (161)
291 cd00923 Cyt_c_Oxidase_Va Cytoc 92.6 1.2 2.6E-05 30.2 7.1 63 231-295 22-84 (103)
292 PRK11906 transcriptional regul 92.1 8.8 0.00019 34.6 15.5 143 200-347 273-435 (458)
293 COG3629 DnrI DNA-binding trans 91.9 1.8 4E-05 36.3 9.2 72 254-327 156-235 (280)
294 PRK15180 Vi polysaccharide bio 91.9 2.8 6.1E-05 37.6 10.5 86 262-349 334-421 (831)
295 KOG0276 Vesicle coat complex C 91.8 4.5 9.7E-05 37.5 11.9 125 197-349 598-722 (794)
296 KOG4648 Uncharacterized conser 91.8 0.42 9.1E-06 40.6 5.3 89 259-351 105-196 (536)
297 PF09613 HrpB1_HrpK: Bacterial 91.6 2.1 4.5E-05 32.4 8.3 117 252-375 8-129 (160)
298 KOG4570 Uncharacterized conser 91.5 3.8 8.3E-05 34.7 10.4 48 265-313 114-161 (418)
299 COG1747 Uncharacterized N-term 91.5 11 0.00024 34.5 19.4 173 184-365 65-249 (711)
300 KOG1586 Protein required for f 91.5 6.5 0.00014 31.9 11.3 24 326-349 161-184 (288)
301 KOG2066 Vacuolar assembly/sort 91.5 14 0.0003 35.6 27.2 168 24-216 364-536 (846)
302 PF02284 COX5A: Cytochrome c o 91.1 2.4 5.2E-05 29.1 7.3 48 313-362 39-86 (108)
303 PF13170 DUF4003: Protein of u 91.0 9.4 0.0002 32.7 19.9 141 233-376 79-238 (297)
304 PF00637 Clathrin: Region in C 90.9 0.31 6.8E-06 36.5 3.6 84 154-242 13-96 (143)
305 KOG0687 26S proteasome regulat 90.8 9.5 0.00021 32.6 12.3 24 254-277 107-130 (393)
306 PF09613 HrpB1_HrpK: Bacterial 90.8 5.8 0.00013 30.1 11.5 55 224-280 18-73 (160)
307 PF00515 TPR_1: Tetratricopept 90.8 0.37 7.9E-06 25.4 2.8 24 290-313 4-27 (34)
308 PF13374 TPR_10: Tetratricopep 90.6 0.8 1.7E-05 25.3 4.4 28 320-347 3-30 (42)
309 KOG0890 Protein kinase of the 90.5 31 0.00068 38.0 24.2 309 62-386 1395-1733(2382)
310 cd00923 Cyt_c_Oxidase_Va Cytoc 90.5 2.4 5.3E-05 28.8 6.9 47 314-362 37-83 (103)
311 KOG1464 COP9 signalosome, subu 90.4 9.2 0.0002 31.7 13.7 185 198-382 40-259 (440)
312 COG1747 Uncharacterized N-term 90.1 15 0.00032 33.7 15.5 162 215-384 65-234 (711)
313 KOG1464 COP9 signalosome, subu 89.7 11 0.00023 31.4 11.8 82 190-272 150-252 (440)
314 PF07719 TPR_2: Tetratricopept 89.7 0.54 1.2E-05 24.6 3.0 28 356-383 2-29 (34)
315 TIGR02561 HrpB1_HrpK type III 89.6 2.8 6.1E-05 31.2 7.3 79 288-370 8-93 (153)
316 PF13174 TPR_6: Tetratricopept 89.3 1.1 2.4E-05 23.1 4.0 25 325-349 6-30 (33)
317 KOG0276 Vesicle coat complex C 89.3 5.7 0.00012 36.9 10.4 46 92-139 648-693 (794)
318 PF13181 TPR_8: Tetratricopept 89.1 1.1 2.3E-05 23.5 3.9 29 321-349 3-31 (34)
319 COG4455 ImpE Protein of avirul 88.8 1.8 4E-05 34.4 6.2 60 290-349 4-65 (273)
320 PF07721 TPR_4: Tetratricopept 88.5 0.63 1.4E-05 22.8 2.4 22 358-379 4-25 (26)
321 PF13374 TPR_10: Tetratricopep 88.0 0.82 1.8E-05 25.3 3.1 29 355-383 2-30 (42)
322 KOG4648 Uncharacterized conser 87.8 4 8.6E-05 35.0 8.0 93 223-319 104-198 (536)
323 PF11207 DUF2989: Protein of u 87.8 5.9 0.00013 31.3 8.5 73 233-306 123-197 (203)
324 PF13174 TPR_6: Tetratricopept 87.6 0.71 1.5E-05 23.9 2.6 28 357-384 2-29 (33)
325 PF13431 TPR_17: Tetratricopep 87.4 0.63 1.4E-05 24.7 2.2 22 286-307 12-33 (34)
326 TIGR03504 FimV_Cterm FimV C-te 87.2 0.8 1.7E-05 26.0 2.6 28 359-386 3-30 (44)
327 COG4455 ImpE Protein of avirul 87.1 5.5 0.00012 31.9 7.8 59 219-278 4-62 (273)
328 COG2976 Uncharacterized protei 86.9 13 0.00029 29.2 12.3 78 62-139 101-186 (207)
329 COG2909 MalT ATP-dependent tra 86.8 34 0.00074 33.7 19.7 196 195-394 425-657 (894)
330 PRK15180 Vi polysaccharide bio 86.6 5.6 0.00012 35.8 8.5 88 223-313 330-417 (831)
331 PF13181 TPR_8: Tetratricopept 86.5 1.3 2.8E-05 23.2 3.2 28 356-383 2-29 (34)
332 KOG1258 mRNA processing protei 86.5 28 0.00061 32.5 24.4 123 15-139 44-178 (577)
333 TIGR02561 HrpB1_HrpK type III 86.3 12 0.00026 28.0 11.6 50 28-79 22-73 (153)
334 TIGR02508 type_III_yscG type I 86.1 8.9 0.00019 26.4 7.8 61 192-255 46-106 (115)
335 PF08311 Mad3_BUB1_I: Mad3/BUB 85.5 12 0.00025 27.3 8.6 44 337-380 81-124 (126)
336 KOG2114 Vacuolar assembly/sort 85.5 39 0.00084 33.1 20.7 44 293-337 711-754 (933)
337 KOG4570 Uncharacterized conser 84.9 5.4 0.00012 33.8 7.2 98 182-280 61-164 (418)
338 COG5187 RPN7 26S proteasome re 84.8 23 0.00049 29.9 10.9 25 252-276 116-140 (412)
339 PF02259 FAT: FAT domain; Int 84.7 27 0.00058 30.7 20.5 62 183-244 144-212 (352)
340 KOG2396 HAT (Half-A-TPR) repea 84.6 32 0.0007 31.5 18.5 96 249-347 457-558 (568)
341 KOG4234 TPR repeat-containing 84.4 19 0.00041 28.6 10.6 94 223-320 102-202 (271)
342 TIGR03504 FimV_Cterm FimV C-te 84.3 2.7 5.8E-05 23.9 3.8 24 222-245 5-28 (44)
343 PF14669 Asp_Glu_race_2: Putat 84.0 19 0.0004 28.3 12.6 64 10-73 2-74 (233)
344 PF11207 DUF2989: Protein of u 83.6 11 0.00023 30.0 8.0 78 296-375 116-198 (203)
345 cd08819 CARD_MDA5_2 Caspase ac 83.5 8.6 0.00019 25.7 6.3 65 35-101 21-86 (88)
346 KOG0890 Protein kinase of the 83.1 83 0.0018 35.1 23.5 147 21-174 1388-1542(2382)
347 COG2909 MalT ATP-dependent tra 82.8 52 0.0011 32.5 26.2 180 197-380 470-684 (894)
348 COG3947 Response regulator con 82.0 5.6 0.00012 33.3 6.2 60 321-382 281-340 (361)
349 PRK09687 putative lyase; Provi 81.5 32 0.0007 29.3 24.8 79 48-126 34-119 (280)
350 COG4785 NlpI Lipoprotein NlpI, 81.2 3 6.4E-05 33.3 4.2 86 261-351 75-164 (297)
351 smart00028 TPR Tetratricopepti 81.0 4.7 0.0001 19.8 4.1 28 322-349 4-31 (34)
352 PRK10941 hypothetical protein; 80.6 11 0.00024 31.8 7.7 60 322-383 184-243 (269)
353 KOG4642 Chaperone-dependent E3 80.5 7.2 0.00016 31.7 6.2 102 261-365 20-127 (284)
354 PF10366 Vps39_1: Vacuolar sor 79.5 15 0.00033 25.8 7.1 28 217-244 40-67 (108)
355 KOG4077 Cytochrome c oxidase, 79.5 14 0.0003 26.7 6.6 71 234-315 67-137 (149)
356 PF10579 Rapsyn_N: Rapsyn N-te 79.4 4.1 8.9E-05 26.5 3.7 47 331-377 18-65 (80)
357 KOG4077 Cytochrome c oxidase, 78.5 16 0.00035 26.4 6.7 54 307-362 72-125 (149)
358 PF04097 Nic96: Nup93/Nic96; 78.1 69 0.0015 31.0 17.0 85 224-313 266-353 (613)
359 PF07163 Pex26: Pex26 protein; 78.0 36 0.00079 28.6 9.6 88 223-311 90-182 (309)
360 KOG4507 Uncharacterized conser 77.4 15 0.00033 34.2 7.9 131 249-383 569-704 (886)
361 PRK11619 lytic murein transgly 76.6 77 0.0017 30.8 28.1 352 14-389 127-510 (644)
362 PF10579 Rapsyn_N: Rapsyn N-te 76.6 5.6 0.00012 25.9 3.8 44 264-307 19-63 (80)
363 KOG0686 COP9 signalosome, subu 76.5 56 0.0012 29.2 12.8 60 186-245 151-216 (466)
364 KOG0545 Aryl-hydrocarbon recep 76.5 40 0.00086 27.8 9.2 55 295-349 238-294 (329)
365 cd08819 CARD_MDA5_2 Caspase ac 76.3 11 0.00025 25.1 5.2 63 69-132 21-86 (88)
366 PF11846 DUF3366: Domain of un 76.3 11 0.00023 30.0 6.4 30 284-313 141-170 (193)
367 KOG4642 Chaperone-dependent E3 76.1 42 0.00092 27.6 10.1 115 226-345 20-143 (284)
368 PF06552 TOM20_plant: Plant sp 76.1 35 0.00076 26.6 9.6 28 335-365 96-123 (186)
369 PF11846 DUF3366: Domain of un 76.0 14 0.00031 29.2 7.0 37 314-351 139-175 (193)
370 KOG3364 Membrane protein invol 75.4 16 0.00035 26.8 6.2 67 284-351 29-102 (149)
371 PF09986 DUF2225: Uncharacteri 75.3 28 0.00061 28.2 8.4 28 357-384 167-194 (214)
372 PF14853 Fis1_TPR_C: Fis1 C-te 75.0 9.1 0.0002 22.8 4.2 26 325-351 7-32 (53)
373 PF14689 SPOB_a: Sensor_kinase 74.4 8.8 0.00019 23.8 4.2 21 325-345 29-49 (62)
374 KOG2908 26S proteasome regulat 74.2 58 0.0013 28.3 11.2 21 327-347 123-143 (380)
375 KOG3807 Predicted membrane pro 73.5 20 0.00044 30.7 7.3 58 256-313 280-337 (556)
376 PRK10564 maltose regulon perip 72.7 7.2 0.00016 33.0 4.5 43 12-54 252-295 (303)
377 PF07163 Pex26: Pex26 protein; 72.4 38 0.00082 28.5 8.3 19 119-137 90-108 (309)
378 PF12862 Apc5: Anaphase-promot 72.0 26 0.00055 23.9 6.6 25 325-349 47-71 (94)
379 KOG1550 Extracellular protein 71.2 98 0.0021 29.5 15.7 175 201-386 228-428 (552)
380 PF06552 TOM20_plant: Plant sp 70.6 30 0.00064 27.0 7.0 31 336-368 52-82 (186)
381 PF12862 Apc5: Anaphase-promot 70.6 16 0.00035 24.9 5.3 55 329-383 8-69 (94)
382 KOG0403 Neoplastic transformat 70.2 86 0.0019 28.5 16.8 92 290-386 512-613 (645)
383 KOG4279 Serine/threonine prote 70.1 1.1E+02 0.0025 29.9 12.3 184 170-358 183-403 (1226)
384 PF10345 Cohesin_load: Cohesin 70.0 1.1E+02 0.0024 29.6 27.7 175 35-212 40-252 (608)
385 PF14561 TPR_20: Tetratricopep 70.0 19 0.00041 24.4 5.4 54 318-372 21-75 (90)
386 PF09670 Cas_Cas02710: CRISPR- 69.2 87 0.0019 28.2 12.0 17 197-213 143-159 (379)
387 TIGR02508 type_III_yscG type I 68.1 37 0.00081 23.5 8.5 49 89-139 47-95 (115)
388 PF13762 MNE1: Mitochondrial s 67.4 50 0.0011 24.7 9.9 76 189-264 43-128 (145)
389 PF09477 Type_III_YscG: Bacter 67.4 40 0.00088 23.6 10.2 76 31-108 21-96 (116)
390 PF09477 Type_III_YscG: Bacter 67.0 41 0.0009 23.6 7.7 52 192-245 47-98 (116)
391 KOG4507 Uncharacterized conser 66.9 42 0.00092 31.5 8.2 98 264-366 620-721 (886)
392 PF04190 DUF410: Protein of un 66.3 79 0.0017 26.6 15.4 140 197-348 2-170 (260)
393 PF10255 Paf67: RNA polymerase 65.9 43 0.00094 30.1 8.1 60 254-313 125-190 (404)
394 PF10475 DUF2450: Protein of u 65.9 55 0.0012 28.1 8.7 53 85-139 102-154 (291)
395 PF11663 Toxin_YhaV: Toxin wit 65.5 9.8 0.00021 27.8 3.4 34 122-158 105-138 (140)
396 KOG0551 Hsp90 co-chaperone CNS 65.4 32 0.00069 29.7 6.8 92 257-348 87-182 (390)
397 PF14689 SPOB_a: Sensor_kinase 65.2 12 0.00027 23.1 3.5 47 334-383 5-51 (62)
398 KOG2659 LisH motif-containing 64.3 78 0.0017 25.8 10.1 100 247-349 22-133 (228)
399 KOG2471 TPR repeat-containing 63.9 1.2E+02 0.0027 28.0 14.4 41 26-66 27-68 (696)
400 KOG1308 Hsp70-interacting prot 63.9 4.5 9.7E-05 34.7 1.7 118 261-383 124-243 (377)
401 COG3947 Response regulator con 63.8 93 0.002 26.6 14.6 59 289-347 281-341 (361)
402 smart00386 HAT HAT (Half-A-TPR 63.8 17 0.00037 18.1 4.1 29 333-363 1-29 (33)
403 PF10255 Paf67: RNA polymerase 63.8 1.1E+02 0.0025 27.6 10.6 29 353-381 162-190 (404)
404 KOG4521 Nuclear pore complex, 63.5 1.9E+02 0.0042 30.1 13.2 19 194-212 929-947 (1480)
405 cd00280 TRFH Telomeric Repeat 63.4 45 0.00098 26.1 6.7 18 296-313 120-137 (200)
406 PF07064 RIC1: RIC1; InterPro 63.4 90 0.0019 26.2 14.6 88 290-383 156-248 (258)
407 KOG2062 26S proteasome regulat 63.2 1.6E+02 0.0034 28.9 20.5 121 260-383 510-634 (929)
408 PRK10564 maltose regulon perip 63.1 17 0.00036 30.9 4.8 39 218-256 259-297 (303)
409 PF09454 Vps23_core: Vps23 cor 63.0 18 0.0004 22.6 3.9 54 316-371 5-58 (65)
410 COG5159 RPN6 26S proteasome re 62.5 97 0.0021 26.3 10.7 57 293-349 131-195 (421)
411 PF10345 Cohesin_load: Cohesin 62.1 1.6E+02 0.0034 28.6 31.6 186 196-382 372-604 (608)
412 KOG1586 Protein required for f 61.7 90 0.002 25.7 16.1 21 259-279 162-182 (288)
413 PF13762 MNE1: Mitochondrial s 61.2 57 0.0012 24.5 6.8 77 84-161 42-128 (145)
414 TIGR03581 EF_0839 conserved hy 60.9 58 0.0013 26.2 7.0 81 302-382 136-235 (236)
415 PF13929 mRNA_stabil: mRNA sta 60.2 1.1E+02 0.0023 26.1 19.9 33 62-94 8-40 (292)
416 KOG4814 Uncharacterized conser 60.1 51 0.0011 31.3 7.6 84 298-383 365-456 (872)
417 PRK10941 hypothetical protein; 60.0 77 0.0017 26.8 8.3 24 116-139 185-208 (269)
418 cd08326 CARD_CASP9 Caspase act 60.0 26 0.00056 23.4 4.4 34 64-97 44-77 (84)
419 PF11817 Foie-gras_1: Foie gra 59.7 54 0.0012 27.3 7.4 53 325-377 184-240 (247)
420 KOG0991 Replication factor C, 59.1 1E+02 0.0022 25.4 10.6 133 113-257 131-279 (333)
421 smart00777 Mad3_BUB1_I Mad3/BU 58.9 68 0.0015 23.4 8.1 44 336-379 80-123 (125)
422 PF11817 Foie-gras_1: Foie gra 58.5 57 0.0012 27.2 7.3 57 290-346 181-245 (247)
423 PF11663 Toxin_YhaV: Toxin wit 58.2 12 0.00027 27.3 2.9 34 226-261 105-138 (140)
424 PRK13342 recombination factor 58.2 1.5E+02 0.0032 27.1 11.5 170 31-213 152-333 (413)
425 KOG2297 Predicted translation 57.8 1.2E+02 0.0027 26.0 16.1 19 320-338 322-340 (412)
426 cd00280 TRFH Telomeric Repeat 57.6 92 0.002 24.5 7.5 40 258-301 118-157 (200)
427 KOG2066 Vacuolar assembly/sort 57.3 2E+02 0.0044 28.3 23.3 26 114-139 507-532 (846)
428 PF12069 DUF3549: Protein of u 57.2 1.4E+02 0.0029 26.3 15.2 138 189-330 170-309 (340)
429 KOG1550 Extracellular protein 56.9 1.8E+02 0.004 27.7 18.5 146 128-280 228-393 (552)
430 KOG2908 26S proteasome regulat 56.6 1.3E+02 0.0028 26.3 8.8 61 192-252 82-156 (380)
431 COG2178 Predicted RNA-binding 56.6 99 0.0021 24.5 9.2 16 367-382 133-148 (204)
432 KOG0376 Serine-threonine phosp 56.2 9.8 0.00021 34.3 2.5 103 257-365 10-115 (476)
433 PF09670 Cas_Cas02710: CRISPR- 56.2 1.3E+02 0.0028 27.1 9.5 54 25-79 140-198 (379)
434 PF04910 Tcf25: Transcriptiona 56.0 1.5E+02 0.0033 26.4 13.1 127 250-380 6-164 (360)
435 PF14853 Fis1_TPR_C: Fis1 C-te 55.5 41 0.00089 20.0 4.3 28 293-320 7-35 (53)
436 PF12926 MOZART2: Mitotic-spin 54.3 63 0.0014 21.6 6.4 62 14-77 8-70 (88)
437 KOG1498 26S proteasome regulat 54.2 1.6E+02 0.0035 26.3 12.5 197 198-395 25-252 (439)
438 KOG3807 Predicted membrane pro 53.8 1.5E+02 0.0033 25.8 11.6 69 291-359 279-351 (556)
439 COG5159 RPN6 26S proteasome re 53.3 1.4E+02 0.0031 25.4 10.4 154 153-308 8-186 (421)
440 PHA02875 ankyrin repeat protei 53.3 1.8E+02 0.0038 26.4 13.2 19 195-213 175-193 (413)
441 COG4259 Uncharacterized protei 53.1 58 0.0013 22.5 5.1 33 325-360 78-110 (121)
442 PF12926 MOZART2: Mitotic-spin 52.2 48 0.001 22.1 4.5 44 2-45 29-72 (88)
443 PF07064 RIC1: RIC1; InterPro 52.2 1.4E+02 0.0031 25.1 11.3 26 19-44 85-110 (258)
444 PRK09462 fur ferric uptake reg 51.8 64 0.0014 24.2 6.1 61 4-65 5-67 (148)
445 PRK12798 chemotaxis protein; R 51.4 1.9E+02 0.0041 26.2 20.2 189 197-388 124-328 (421)
446 KOG0686 COP9 signalosome, subu 51.4 1.9E+02 0.004 26.1 13.8 63 149-213 151-215 (466)
447 PF13934 ELYS: Nuclear pore co 51.3 1.4E+02 0.003 24.6 14.6 105 219-332 79-185 (226)
448 PF11838 ERAP1_C: ERAP1-like C 50.0 1.7E+02 0.0037 25.3 18.3 30 318-347 200-229 (324)
449 COG0735 Fur Fe2+/Zn2+ uptake r 49.8 1.1E+02 0.0024 23.0 7.8 44 222-265 26-69 (145)
450 PRK11639 zinc uptake transcrip 49.0 1.2E+02 0.0026 23.5 7.3 42 224-265 33-74 (169)
451 PF11848 DUF3368: Domain of un 48.6 53 0.0011 19.0 5.1 32 227-258 13-44 (48)
452 PF14669 Asp_Glu_race_2: Putat 48.1 1.4E+02 0.003 23.7 14.2 95 209-313 100-207 (233)
453 PRK09857 putative transposase; 47.4 1.8E+02 0.004 25.0 8.9 63 324-388 211-273 (292)
454 PF09454 Vps23_core: Vps23 cor 47.3 65 0.0014 20.2 4.5 49 214-263 6-54 (65)
455 COG5108 RPO41 Mitochondrial DN 47.2 1.3E+02 0.0028 29.0 8.1 78 221-298 33-114 (1117)
456 PF10366 Vps39_1: Vacuolar sor 46.5 1E+02 0.0022 21.7 7.9 27 321-347 41-67 (108)
457 PHA02875 ankyrin repeat protei 46.5 2.3E+02 0.0049 25.7 12.5 76 27-106 10-90 (413)
458 KOG0403 Neoplastic transformat 46.3 1.2E+02 0.0026 27.7 7.3 55 85-139 513-570 (645)
459 PF05944 Phage_term_smal: Phag 46.2 64 0.0014 23.8 5.0 35 316-351 46-80 (132)
460 PF04034 DUF367: Domain of unk 46.2 1.1E+02 0.0025 22.2 7.6 60 286-345 65-125 (127)
461 KOG0545 Aryl-hydrocarbon recep 46.1 1.5E+02 0.0032 24.7 7.3 54 326-381 237-290 (329)
462 PRK14956 DNA polymerase III su 46.0 2E+02 0.0044 26.8 9.1 94 234-349 184-278 (484)
463 PF04190 DUF410: Protein of un 45.9 1.8E+02 0.0039 24.5 17.2 82 184-280 89-170 (260)
464 PF12796 Ank_2: Ankyrin repeat 45.6 50 0.0011 21.8 4.3 16 62-77 35-50 (89)
465 TIGR02270 conserved hypothetic 45.5 2.4E+02 0.0052 25.7 24.9 233 23-278 45-279 (410)
466 cd07153 Fur_like Ferric uptake 44.3 87 0.0019 22.2 5.6 47 222-268 6-52 (116)
467 KOG2581 26S proteasome regulat 44.0 2.5E+02 0.0053 25.4 10.4 24 290-313 212-235 (493)
468 PRK13800 putative oxidoreducta 43.5 3.9E+02 0.0084 27.6 28.5 254 102-382 625-879 (897)
469 smart00638 LPD_N Lipoprotein N 43.0 3.1E+02 0.0068 26.3 21.9 99 49-148 308-411 (574)
470 KOG4814 Uncharacterized conser 42.1 1.7E+02 0.0038 28.1 8.0 85 261-347 364-456 (872)
471 cd08332 CARD_CASP2 Caspase act 42.0 64 0.0014 21.8 4.2 29 65-93 49-77 (90)
472 PF15469 Sec5: Exocyst complex 41.3 1.7E+02 0.0037 22.9 8.7 28 369-396 153-180 (182)
473 KOG2422 Uncharacterized conser 41.2 1.9E+02 0.004 27.5 8.0 100 23-122 349-460 (665)
474 KOG1308 Hsp70-interacting prot 41.1 41 0.00088 29.2 3.8 120 226-349 124-245 (377)
475 COG5108 RPO41 Mitochondrial DN 40.7 1.6E+02 0.0036 28.4 7.7 42 56-97 33-81 (1117)
476 PF04097 Nic96: Nup93/Nic96; 40.7 3.6E+02 0.0077 26.3 17.0 85 192-279 265-355 (613)
477 KOG2471 TPR repeat-containing 40.7 1.2E+02 0.0026 28.0 6.7 104 193-299 248-381 (696)
478 PF06957 COPI_C: Coatomer (COP 40.2 2.9E+02 0.0062 25.3 9.0 37 314-351 293-331 (422)
479 PF01475 FUR: Ferric uptake re 39.9 84 0.0018 22.5 4.9 47 221-267 12-58 (120)
480 PF08311 Mad3_BUB1_I: Mad3/BUB 39.9 1.5E+02 0.0032 21.6 8.1 43 234-276 81-124 (126)
481 KOG4567 GTPase-activating prot 39.2 2.6E+02 0.0056 24.3 10.0 91 236-333 263-363 (370)
482 KOG3364 Membrane protein invol 39.1 1.6E+02 0.0035 21.9 8.9 71 248-318 29-103 (149)
483 PRK12798 chemotaxis protein; R 39.0 3E+02 0.0065 25.0 17.0 184 196-385 92-287 (421)
484 cd08323 CARD_APAF1 Caspase act 38.9 94 0.002 20.9 4.5 32 64-95 42-73 (86)
485 PRK11639 zinc uptake transcrip 38.4 1.9E+02 0.0041 22.4 7.3 50 114-164 27-76 (169)
486 COG4259 Uncharacterized protei 38.2 1.4E+02 0.0029 20.8 5.8 32 291-322 76-108 (121)
487 PF02847 MA3: MA3 domain; Int 37.8 1.3E+02 0.0029 21.0 5.7 21 118-138 8-28 (113)
488 PF13929 mRNA_stabil: mRNA sta 37.5 2.6E+02 0.0057 23.9 25.7 114 200-313 143-264 (292)
489 COG2912 Uncharacterized conser 36.9 1.3E+02 0.0029 25.3 6.0 57 325-383 187-243 (269)
490 KOG2582 COP9 signalosome, subu 36.9 3.1E+02 0.0066 24.4 11.0 56 329-385 287-346 (422)
491 PF04124 Dor1: Dor1-like famil 36.8 1.3E+02 0.0029 26.5 6.6 21 56-76 111-132 (338)
492 PF07720 TPR_3: Tetratricopept 36.8 61 0.0013 17.4 2.8 22 358-379 4-25 (36)
493 PRK13800 putative oxidoreducta 36.7 5E+02 0.011 26.8 27.1 256 71-348 625-881 (897)
494 KOG2063 Vacuolar assembly/sort 36.3 4.9E+02 0.011 26.6 15.8 113 186-299 505-638 (877)
495 PF07575 Nucleopor_Nup85: Nup8 35.9 1.6E+02 0.0035 28.2 7.4 27 81-108 149-175 (566)
496 PF11838 ERAP1_C: ERAP1-like C 34.7 3E+02 0.0065 23.8 15.0 29 250-278 200-228 (324)
497 PF08424 NRDE-2: NRDE-2, neces 34.7 3.1E+02 0.0068 23.9 13.6 120 233-355 48-190 (321)
498 KOG1839 Uncharacterized protei 34.6 5.4E+02 0.012 27.3 10.7 153 225-378 941-1122(1236)
499 PF08195 TRI9: TRI9 protein; 34.3 15 0.00032 19.5 0.2 14 384-397 9-22 (43)
500 PF03745 DUF309: Domain of unk 34.0 1.2E+02 0.0025 18.8 6.4 49 294-342 6-62 (62)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.7e-65 Score=486.05 Aligned_cols=393 Identities=30% Similarity=0.558 Sum_probs=349.7
Q ss_pred HhhHHHHhC-CCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCC
Q 048364 2 QLFSQMHRQ-SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPER 79 (400)
Q Consensus 2 ~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~ 79 (400)
++|+.|... ++.||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.++..| +.|+++.|.++|++|++|
T Consensus 108 ~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~ 187 (697)
T PLN03081 108 ELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER 187 (697)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCC
Confidence 466677654 366777777777777777777777777777777777777777777777777 777777777777766666
Q ss_pred ChhhHHHHHHHHHcC-----------------------------------------------------------------
Q 048364 80 NAVTWNTMIKGYSKS----------------------------------------------------------------- 94 (400)
Q Consensus 80 ~~~~~~~l~~~~~~~----------------------------------------------------------------- 94 (400)
|..+||+++.+|++.
T Consensus 188 ~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~ 267 (697)
T PLN03081 188 NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID 267 (697)
T ss_pred CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHH
Confidence 555555555555554
Q ss_pred -----CChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhh
Q 048364 95 -----GNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMG 169 (400)
Q Consensus 95 -----~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a 169 (400)
|++++|.++|++|..+|+.+||+|+.+|++.|++++|+++|++|. ..|+.||..||+.++.+|++.|+++. +
T Consensus 268 ~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~-~~g~~pd~~t~~~ll~a~~~~g~~~~--a 344 (697)
T PLN03081 268 MYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMR-DSGVSIDQFTFSIMIRIFSRLALLEH--A 344 (697)
T ss_pred HHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhccchHH--H
Confidence 455555555555566788899999999999999999999999998 88999999999999999999999999 9
Q ss_pred hhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC
Q 048364 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP 249 (400)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 249 (400)
.+++..+.+.|+.|+..+++.|+++|++.|++++|.++|++|.++|..+||+||.+|++.|+.++|.++|++|.+.|+.|
T Consensus 345 ~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P 424 (697)
T PLN03081 345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424 (697)
T ss_pred HHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHH
Q 048364 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAAC 329 (400)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~ 329 (400)
|..||+.++.+|++.|..++|.++|+.|.+++|+.|+..+|+.++++|++.|++++|.+++++|++.|+..+|++++.+|
T Consensus 425 d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~ 504 (697)
T PLN03081 425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTAC 504 (697)
T ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999778999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhccccccccCccccccCC
Q 048364 330 KEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLS 399 (400)
Q Consensus 330 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~ 399 (400)
...|+++.|..+++++.+.. | .+..+|..|+.+|.+.|++++|.++++.|.+.|+++.|++|||++++
T Consensus 505 ~~~g~~~~a~~~~~~l~~~~-p-~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~ 572 (697)
T PLN03081 505 RIHKNLELGRLAAEKLYGMG-P-EKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKK 572 (697)
T ss_pred HHcCCcHHHHHHHHHHhCCC-C-CCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECC
Confidence 99999999999999999888 7 77899999999999999999999999999999999999999999875
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-62 Score=477.30 Aligned_cols=392 Identities=33% Similarity=0.673 Sum_probs=363.0
Q ss_pred CHhhHHHHhCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCC
Q 048364 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPER 79 (400)
Q Consensus 1 l~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~ 79 (400)
+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.++.+| +.|++++|.++|++|..|
T Consensus 273 l~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 352 (857)
T PLN03077 273 LELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK 352 (857)
T ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Confidence 3689999999999999999999999999999999999999999999999999999999999 999999999999999888
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHhhC----------------------------------------------------
Q 048364 80 NAVTWNTMIKGYSKSGNVCEARDFFERM---------------------------------------------------- 107 (400)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~---------------------------------------------------- 107 (400)
|..+||++|.+|++.|++++|+++|++|
T Consensus 353 d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 8777777777777777777776666655
Q ss_pred ------------------CCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhh
Q 048364 108 ------------------PLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMG 169 (400)
Q Consensus 108 ------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a 169 (400)
.++|..+|+.++.+|++.|+.++|+++|++|. . ++.||..||+.++.+|++.|+.+. +
T Consensus 433 ~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~-~-~~~pd~~t~~~lL~a~~~~g~l~~--~ 508 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-L-TLKPNSVTLIAALSACARIGALMC--G 508 (857)
T ss_pred HHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHH-h-CCCCCHhHHHHHHHHHhhhchHHH--h
Confidence 34555566666666666666666777777775 3 589999999999999999999999 9
Q ss_pred hhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC
Q 048364 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP 249 (400)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 249 (400)
.+++..+.+.|+.++..++++|+++|+++|++++|.++|+.+ .+|..+||++|.+|++.|+.++|+++|++|.+.|+.|
T Consensus 509 ~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P 587 (857)
T PLN03077 509 KEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587 (857)
T ss_pred HHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHH
Q 048364 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAAC 329 (400)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~ 329 (400)
|..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|+.++.+|++.|++++|.+++++|++.||..+|++|+.+|
T Consensus 588 d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac 667 (857)
T PLN03077 588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNAC 667 (857)
T ss_pred CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999778999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhccccccccCccccccCC
Q 048364 330 KEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISSLS 399 (400)
Q Consensus 330 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~ 399 (400)
...|+.+.++...+++.+.. | .+...|..|...|...|+|++|.++.+.|.+.|++++|++|||+++|
T Consensus 668 ~~~~~~e~~e~~a~~l~~l~-p-~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~ 735 (857)
T PLN03077 668 RIHRHVELGELAAQHIFELD-P-NSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKG 735 (857)
T ss_pred HHcCChHHHHHHHHHHHhhC-C-CCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECC
Confidence 99999999999999999998 8 88999999999999999999999999999999999999999999987
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.6e-61 Score=457.63 Aligned_cols=384 Identities=17% Similarity=0.255 Sum_probs=362.4
Q ss_pred CHhhHHHHhCCC-CCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCC-
Q 048364 1 MQLFSQMHRQSV-PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELP- 77 (400)
Q Consensus 1 l~~~~~m~~~g~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~- 77 (400)
+++|++|.+.|+ +|+..+++.++..|.+.|.++.|.++++.|.. |+..+|+.++.+| +.|+++.|.++|+.|.
T Consensus 390 l~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~ 465 (1060)
T PLN03218 390 IDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQE 465 (1060)
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 368999999985 57888889999999999999999999988854 8999999999999 9999999999999997
Q ss_pred ---CCChhhHHHHHHHHHcCCChHHHHHHHhhCC----CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHH
Q 048364 78 ---ERNAVTWNTMIKGYSKSGNVCEARDFFERMP----LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMT 150 (400)
Q Consensus 78 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 150 (400)
.||..+|+++|.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|. ..|+.||..+
T Consensus 466 ~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~-~~Gv~PD~vT 544 (1060)
T PLN03218 466 AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR-SKNVKPDRVV 544 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH-HcCCCCCHHH
Confidence 4799999999999999999999999999998 6899999999999999999999999999998 8899999999
Q ss_pred HHHHHHHhhcccchhhhhhhhhhhHHHh--ccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC----CCcccHHHHHH
Q 048364 151 IGAVLSGCSHLGSVGLLMGKSAHGFIVK--NEWELNEQIATILVDMYAKCGFLKYALMVFELMEE----RNVISWTALIC 224 (400)
Q Consensus 151 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~ 224 (400)
|+.+|.+|++.|+++. |.++++.|.+ .++.||..+|+.++.+|++.|++++|.++|+.|.+ |+..+|+.+|.
T Consensus 545 YnsLI~a~~k~G~~de--A~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ 622 (1060)
T PLN03218 545 FNALISACGQSGAVDR--AFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622 (1060)
T ss_pred HHHHHHHHHHCCCHHH--HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 9999999999999999 9999999986 67899999999999999999999999999999986 57789999999
Q ss_pred HHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChH
Q 048364 225 GSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLE 304 (400)
Q Consensus 225 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 304 (400)
+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+ .|+.|+..+|+.+|.+|++.|+++
T Consensus 623 ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k-~G~~pd~~tynsLI~ay~k~G~~e 701 (1060)
T PLN03218 623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK-QGIKLGTVSYSSLMGACSNAKNWK 701 (1060)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999999999999999999999995 499999999999999999999999
Q ss_pred HHHHHHHhc---cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHH
Q 048364 305 EAYEVIRTM---RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLM 381 (400)
Q Consensus 305 ~a~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 381 (400)
+|.++|++| ++.||..+|+.+|.+|++.|++++|.++|++|.+.+. .|+..+|..++.+|.+.|++++|.+++++|
T Consensus 702 eA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi-~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M 780 (1060)
T PLN03218 702 KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL-CPNTITYSILLVASERKDDADVGLDLLSQA 780 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999 7899999999999999999999999999999999994 499999999999999999999999999999
Q ss_pred hccccccccCcc
Q 048364 382 LNQNVRKARGSS 393 (400)
Q Consensus 382 ~~~~~~~~~~~~ 393 (400)
.+.|+.|+..+.
T Consensus 781 ~k~Gi~pd~~ty 792 (1060)
T PLN03218 781 KEDGIKPNLVMC 792 (1060)
T ss_pred HHcCCCCCHHHH
Confidence 999999987543
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.8e-60 Score=455.09 Aligned_cols=384 Identities=18% Similarity=0.288 Sum_probs=361.6
Q ss_pred HhhHHHHhCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCC---
Q 048364 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELP--- 77 (400)
Q Consensus 2 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~--- 77 (400)
++|+.|.. ||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+| +.|++++|.++|++|.
T Consensus 427 ~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G 502 (1060)
T PLN03218 427 RFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG 502 (1060)
T ss_pred HHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC
Confidence 45666653 999999999999999999999999999999999999999999999999 9999999999999998
Q ss_pred -CCChhhHHHHHHHHHcCCChHHHHHHHhhCC----CCChhhHHHHHHHHHhcCCcchHHHHHHHHHh-cCCCCCCHHHH
Q 048364 78 -ERNAVTWNTMIKGYSKSGNVCEARDFFERMP----LRNVASWSAMIAAYLNAGAYDPGLKLFREMIS-NEGLTPDQMTI 151 (400)
Q Consensus 78 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~p~~~~~ 151 (400)
.||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|.. ..++.||..+|
T Consensus 503 v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTy 582 (1060)
T PLN03218 503 VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITV 582 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHH
Confidence 5899999999999999999999999999996 68999999999999999999999999999973 26899999999
Q ss_pred HHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC----CCcccHHHHHHHHH
Q 048364 152 GAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE----RNVISWTALICGSA 227 (400)
Q Consensus 152 ~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~ 227 (400)
+.++.+|++.|+++. |.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|+
T Consensus 583 naLI~ay~k~G~lde--A~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~ 660 (1060)
T PLN03218 583 GALMKACANAGQVDR--AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660 (1060)
T ss_pred HHHHHHHHHCCCHHH--HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999999999999999999999985 78999999999999
Q ss_pred hCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHH
Q 048364 228 HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307 (400)
Q Consensus 228 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 307 (400)
+.|++++|.+++++|.+.|+.||..+|+++|.+|++.|++++|.++|+.|.+ .++.||..+|+.+|.+|++.|++++|.
T Consensus 661 k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~-~g~~PdvvtyN~LI~gy~k~G~~eeAl 739 (1060)
T PLN03218 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS-IKLRPTVSTMNALITALCEGNQLPKAL 739 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999984 599999999999999999999999999
Q ss_pred HHHHhc---cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhc----c------------
Q 048364 308 EVIRTM---RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM----N------------ 368 (400)
Q Consensus 308 ~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~------------ 368 (400)
++|++| |+.||..||+.++.+|++.|++++|.+++++|.+.+ ..|+..+|+.++..|.+ .
T Consensus 740 elf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G-i~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~ 818 (1060)
T PLN03218 740 EVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG-IKPNLVMCRCITGLCLRRFEKACALGEPVVSFDS 818 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhc
Confidence 999999 899999999999999999999999999999999999 55999999999866432 1
Q ss_pred -------cchHHHHHHHHHHhccccccccCcc
Q 048364 369 -------EKWEGAERVRKLMLNQNVRKARGSS 393 (400)
Q Consensus 369 -------g~~~~a~~~~~~m~~~~~~~~~~~~ 393 (400)
+..+.|..+|++|.+.|+.|+..+.
T Consensus 819 g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~ 850 (1060)
T PLN03218 819 GRPQIENKWTSWALMVYRETISAGTLPTMEVL 850 (1060)
T ss_pred cccccccchHHHHHHHHHHHHHCCCCCCHHHH
Confidence 2246799999999999999987654
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.8e-59 Score=451.99 Aligned_cols=384 Identities=26% Similarity=0.448 Sum_probs=348.1
Q ss_pred CHhhHHHHhCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCC
Q 048364 1 MQLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPER 79 (400)
Q Consensus 1 l~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~ 79 (400)
+++|++|+..|+.||..||+.++++|+..+++..+.+++..+.+.|+.||..+++.++.+| +.|++++|.++|++|+++
T Consensus 172 ~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~ 251 (857)
T PLN03077 172 LCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR 251 (857)
T ss_pred HHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCC
Confidence 3689999999999999999999999999999999999999999999999999999999999 999999999999988876
Q ss_pred ChhhHHHHHHHHH-------------------------------------------------------------------
Q 048364 80 NAVTWNTMIKGYS------------------------------------------------------------------- 92 (400)
Q Consensus 80 ~~~~~~~l~~~~~------------------------------------------------------------------- 92 (400)
|..+||++|.+|+
T Consensus 252 d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~ 331 (857)
T PLN03077 252 DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQ 331 (857)
T ss_pred CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHH
Confidence 6666655555554
Q ss_pred ---cCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhh
Q 048364 93 ---KSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMG 169 (400)
Q Consensus 93 ---~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a 169 (400)
+.|++++|.++|++|..||..+||+++.+|++.|++++|+++|++|. ..|+.||..||+.++.+|++.|+++. +
T Consensus 332 ~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~-~~g~~Pd~~t~~~ll~a~~~~g~~~~--a 408 (857)
T PLN03077 332 MYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALME-QDNVSPDEITIASVLSACACLGDLDV--G 408 (857)
T ss_pred HHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHH-HhCCCCCceeHHHHHHHHhccchHHH--H
Confidence 45555566666666677888899999999999999999999999998 88999999999999999999999999 9
Q ss_pred hhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC
Q 048364 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP 249 (400)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 249 (400)
.++++.+.+.|+.|+..+++.|+++|++.|++++|.++|++|.++|..+|+.+|.+|++.|+.++|+.+|++|.. ++.|
T Consensus 409 ~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~p 487 (857)
T PLN03077 409 VKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKP 487 (857)
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986 5999
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHH
Q 048364 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAAC 329 (400)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~ 329 (400)
|..||+.++.+|++.|+++.+.+++..+.+ .|+.++..++++|+.+|+++|++++|.++|+++ .||..+|+++|.+|
T Consensus 488 d~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~ 564 (857)
T PLN03077 488 NSVTLIAALSACARIGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGY 564 (857)
T ss_pred CHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHH
Confidence 999999999999999999999999999984 599999999999999999999999999999988 78999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHh-ccccccccCc
Q 048364 330 KEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML-NQNVRKARGS 392 (400)
Q Consensus 330 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~ 392 (400)
++.|+.++|.++|++|.+.+ ..|+..||..++.+|.+.|++++|.++|+.|. +.|+.|+..+
T Consensus 565 ~~~G~~~~A~~lf~~M~~~g-~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~ 627 (857)
T PLN03077 565 VAHGKGSMAVELFNRMVESG-VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627 (857)
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH
Confidence 99999999999999999888 44899999999999999999999999999998 6788887644
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-57 Score=432.10 Aligned_cols=376 Identities=22% Similarity=0.354 Sum_probs=360.2
Q ss_pred CCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhC-cccchhhhhHHHHHH-HhCCHHHHHHHHhhCC----CCChhhHH
Q 048364 12 VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLG-FISHVYVATSLLHEY-VVTSFGFARKLFDELP----ERNAVTWN 85 (400)
Q Consensus 12 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~----~~~~~~~~ 85 (400)
..++..+|+.++..+.+.|++++|.++|+.|...+ ..||..+|+.++.++ +.++++.+..++..|. .||..+||
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34566799999999999999999999999998875 679999999999999 9999999999999886 48999999
Q ss_pred HHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchh
Q 048364 86 TMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVG 165 (400)
Q Consensus 86 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~ 165 (400)
.++.+|++.|++++|.++|++|..||..+||+++.+|++.|++++|+++|++|. ..|+.||..||+.++.+|++.|..+
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~-~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMW-EDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHH-HhCCCCChhhHHHHHHHHhcCCcHH
Confidence 999999999999999999999999999999999999999999999999999999 8899999999999999999999999
Q ss_pred hhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHC
Q 048364 166 LLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245 (400)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 245 (400)
. +.+++..+.+.|+.+|..+++.|+++|++.|++++|.++|++|.++|..+||.++.+|++.|++++|.++|++|.+.
T Consensus 242 ~--~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 242 A--GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred H--HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHHH
Q 048364 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSF 325 (400)
Q Consensus 246 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l 325 (400)
|+.||..||++++.+|++.|++++|.++++.|.+ .|+.|+..+|+.|+.+|+++|++++|.++|++|. .||..+||.+
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~-~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~l 397 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR-TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNAL 397 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH-hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHH
Confidence 9999999999999999999999999999999995 4999999999999999999999999999999995 5899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc-cccccccCcc
Q 048364 326 LAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN-QNVRKARGSS 393 (400)
Q Consensus 326 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~~ 393 (400)
|.+|++.|+.++|.++|++|.+.+ ..|+..||..++.+|.+.|..++|.++|+.|.+ .|+.|+..+.
T Consensus 398 I~~y~~~G~~~~A~~lf~~M~~~g-~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y 465 (697)
T PLN03081 398 IAGYGNHGRGTKAVEMFERMIAEG-VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY 465 (697)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch
Confidence 999999999999999999999999 559999999999999999999999999999986 6998886553
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=1.1e-25 Score=223.04 Aligned_cols=358 Identities=12% Similarity=0.063 Sum_probs=173.8
Q ss_pred CchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC---CChhhHHHHHHH
Q 048364 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE---RNAVTWNTMIKG 90 (400)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~ 90 (400)
+...+..+...+...|++++|.+.++.+.+..+. +..++..+...+ ..|+.++|...++++.. .+...+..++..
T Consensus 498 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 576 (899)
T TIGR02917 498 FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQY 576 (899)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHH
Confidence 3444455555555555555555555555554322 334444444455 55555555555555432 123334444445
Q ss_pred HHcCCChHHHHHHHhhCC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcC-------------------------
Q 048364 91 YSKSGNVCEARDFFERMP---LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNE------------------------- 142 (400)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~------------------------- 142 (400)
+.+.|++++|.++++.+. +.+...|..+..++.+.|++++|...|+++.+..
T Consensus 577 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 656 (899)
T TIGR02917 577 YLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAIT 656 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555554443 1233444445555555555555555555444110
Q ss_pred ------CCCC-CHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--
Q 048364 143 ------GLTP-DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE-- 213 (400)
Q Consensus 143 ------~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 213 (400)
...| +..++..+...+...|+++. +..+++.+.+.. +.+...+..+...+...|++++|.+.|+.+.+
T Consensus 657 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 657 SLKRALELKPDNTEAQIGLAQLLLAAKRTES--AKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH--HHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 1112 23344444444444444444 444444444433 22333444444455555555555555554432
Q ss_pred CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHH
Q 048364 214 RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293 (400)
Q Consensus 214 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 293 (400)
|+..++..++.++.+.|++++|...++++.+.. +.+...+..+...|...|++++|..+|+++.+. .+++...++.+
T Consensus 734 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l 810 (899)
T TIGR02917 734 PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNL 810 (899)
T ss_pred CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 333344444455555555555555555554432 223444455555555555555555555555531 23344445555
Q ss_pred HHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccch
Q 048364 294 VDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKW 371 (400)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 371 (400)
+..+...|+ .+|+..++++ ...| +..++..+...+...|++++|..+++++++.+ | .++.++..++.++.+.|++
T Consensus 811 ~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~-~~~~~~~~l~~~~~~~g~~ 887 (899)
T TIGR02917 811 AWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-P-EAAAIRYHLALALLATGRK 887 (899)
T ss_pred HHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C-CChHHHHHHHHHHHHcCCH
Confidence 555555555 4455555554 2222 23344455555555566666666666666655 5 4555555566666666666
Q ss_pred HHHHHHHHHHh
Q 048364 372 EGAERVRKLML 382 (400)
Q Consensus 372 ~~a~~~~~~m~ 382 (400)
++|.+++++|+
T Consensus 888 ~~A~~~~~~~~ 898 (899)
T TIGR02917 888 AEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHh
Confidence 66666655554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=1e-24 Score=216.13 Aligned_cols=371 Identities=13% Similarity=0.066 Sum_probs=230.7
Q ss_pred hHHHHhCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC---C
Q 048364 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE---R 79 (400)
Q Consensus 4 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~---~ 79 (400)
++.+... .+++..++..+...+...|++++|.+.|+++.+..+. +...+..+...+ ..|++++|...++++.+ .
T Consensus 454 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 531 (899)
T TIGR02917 454 AKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK 531 (899)
T ss_pred HHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC
Confidence 3444332 3556777888888888888888888888888775432 444566666777 88888888888887763 3
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHhhCC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 048364 80 NAVTWNTMIKGYSKSGNVCEARDFFERMP---LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLS 156 (400)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~ 156 (400)
+..++..+...+.+.|+.++|...|+++. ..+...+..++..+.+.|++++|.++++++. . ..+.+..+|..+..
T Consensus 532 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~~~l~~ 609 (899)
T TIGR02917 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAA-D-AAPDSPEAWLMLGR 609 (899)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHH-H-cCCCCHHHHHHHHH
Confidence 56677788888888888888888888774 3355677778888888888888888888887 2 33456677888888
Q ss_pred HhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChh
Q 048364 157 GCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSE 233 (400)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~ 233 (400)
++...|+++. |...+..+.+.. +.+...+..+..+|...|++++|...|+++.+ | +..++..++..+...|+++
T Consensus 610 ~~~~~~~~~~--A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 610 AQLAAGDLNK--AVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHcCCHHH--HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Confidence 8888888888 888888877654 23456677777888888888888888877654 2 3345555555566666666
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhc-------------------------------C
Q 048364 234 DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY-------------------------------D 282 (400)
Q Consensus 234 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------------------------~ 282 (400)
+|..+++.+...+ +++...+..+...+...|++++|.+.++.+.... .
T Consensus 687 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 687 SAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred HHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 6666665555543 2234444445555555555555555555544210 1
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHH
Q 048364 283 LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RL-EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360 (400)
Q Consensus 283 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 360 (400)
.+.+...+..+...|...|++++|.+.|+++ .. +++..+++.+...+...|+ ++|..+++++.+.. | .++.++..
T Consensus 766 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~-~~~~~~~~ 842 (899)
T TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-P-NIPAILDT 842 (899)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-C-CCcHHHHH
Confidence 1223333444444444444444444444444 11 2233344444444444444 44444444444444 4 44444445
Q ss_pred HHHHhhcccchHHHHHHHHHHhccc
Q 048364 361 ICDLYTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 361 l~~~~~~~g~~~~a~~~~~~m~~~~ 385 (400)
++.++...|++++|.++++++.+.+
T Consensus 843 ~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 843 LGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5555555555555555555555533
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=1.8e-22 Score=180.49 Aligned_cols=291 Identities=13% Similarity=0.120 Sum_probs=171.7
Q ss_pred cCCChHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCC---HHHHHHHHHHhhcccchhh
Q 048364 93 KSGNVCEARDFFERMPL--R-NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD---QMTIGAVLSGCSHLGSVGL 166 (400)
Q Consensus 93 ~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~ll~~~~~~~~~~~ 166 (400)
..|++++|+..|+++.. | +..++..+...+...|++++|..+++.+. ..+..++ ...+..+...+.+.|+++.
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l-~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLL-SRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 34444444444444431 1 22334444444444444444444444444 2111110 1233444444444444444
Q ss_pred hhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCc--------ccHHHHHHHHHhCCChhhHHHH
Q 048364 167 LMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNV--------ISWTALICGSAHRGYSEDALSL 238 (400)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~ 238 (400)
|..++..+.+.. +.+..++..++.++.+.|++++|.+.++.+.+.+. ..+..+...+.+.|++++|...
T Consensus 126 --A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 126 --AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred --HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 444444444331 22344555566666666666666666666654211 1234556666777777888887
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc
Q 048364 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP 317 (400)
Q Consensus 239 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p 317 (400)
|+++.+.. +.+...+..+...+.+.|++++|.++++++.+. +......++..++.+|...|++++|...++++ ...|
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 77776653 223456666777777788888888888877742 21112345677777888888888888888877 5566
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhc---ccchHHHHHHHHHHhccccccccCc
Q 048364 318 NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM---NEKWEGAERVRKLMLNQNVRKARGS 392 (400)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~ 392 (400)
+...+..++..+.+.|++++|..+++++.+.. | +...+..++..+.. .|+.+++..++++|.+.++.|+|.+
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~-P--~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRRH-P--SLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-c--CHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 66666777778888888888888888887776 5 44456655555543 4577788888888888888877773
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=6.6e-22 Score=176.87 Aligned_cols=296 Identities=14% Similarity=0.052 Sum_probs=216.9
Q ss_pred HhCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHhhCCCC-C------hhhHHHHHHHHHhcCCcchH
Q 048364 62 VVTSFGFARKLFDELPE--R-NAVTWNTMIKGYSKSGNVCEARDFFERMPLR-N------VASWSAMIAAYLNAGAYDPG 131 (400)
Q Consensus 62 ~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~------~~~~~~l~~~~~~~g~~~~a 131 (400)
..|++++|...|+++.+ | +..++..+...+...|++++|..+++.+... + ...+..++..|.+.|++++|
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 56666667776666653 2 3345666666666777777777776665421 1 13456666777777777777
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccch----HHHHHHHHHHHHhcCCHHHHHHH
Q 048364 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN----EQIATILVDMYAKCGFLKYALMV 207 (400)
Q Consensus 132 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~ 207 (400)
..+|+++. .. -+++..++..++..+.+.|++++ |...++.+.+.+..+. ...+..+...+.+.|++++|...
T Consensus 127 ~~~~~~~l-~~-~~~~~~~~~~la~~~~~~g~~~~--A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 127 EELFLQLV-DE-GDFAEGALQQLLEIYQQEKDWQK--AIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHH-cC-CcchHHHHHHHHHHHHHhchHHH--HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777776 21 23345566677777777777777 7777776666543321 22456677888899999999999
Q ss_pred HHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCC
Q 048364 208 FELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLE 284 (400)
Q Consensus 208 ~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 284 (400)
|+++.+ | +...+..+...+.+.|++++|.++++++...+......++..++.+|.+.|++++|...++.+.+. .
T Consensus 203 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~ 279 (389)
T PRK11788 203 LKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---Y 279 (389)
T ss_pred HHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C
Confidence 999875 3 345677888999999999999999999987643333467888999999999999999999999843 5
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCCchHHHH
Q 048364 285 PRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWGSFLAACKE---HKQFDMAERVIKQALRMVKPENDGGVFTL 360 (400)
Q Consensus 285 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 360 (400)
|+...+..++..+.+.|++++|..+++++ ...|+..+++.++..+.. .|+.+++..+++++.+... .+++.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~-~~~p~---- 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL-KRKPR---- 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH-hCCCC----
Confidence 66667788999999999999999999987 668999999988887764 5589999999999998773 24544
Q ss_pred HHHHhhcccch
Q 048364 361 ICDLYTMNEKW 371 (400)
Q Consensus 361 l~~~~~~~g~~ 371 (400)
..|.++|-.
T Consensus 355 --~~c~~cg~~ 363 (389)
T PRK11788 355 --YRCRNCGFT 363 (389)
T ss_pred --EECCCCCCC
Confidence 335555544
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=5.7e-22 Score=171.28 Aligned_cols=357 Identities=13% Similarity=0.118 Sum_probs=290.7
Q ss_pred CCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCCh--hh-HHHHHH
Q 048364 14 SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERNA--VT-WNTMIK 89 (400)
Q Consensus 14 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~--~~-~~~l~~ 89 (400)
.-..+|..+...+...|+++.|+.+++.+++..++ ....|..+..++ ..|+.+.|...|.+..+-|+ .. .+.+..
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgn 192 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGN 192 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhH
Confidence 34678999999999999999999999999986533 566788888888 99999999999988876444 32 334455
Q ss_pred HHHcCCChHHHHHHHhhCC--CCC-hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCH-HHHHHHHHHhhcccchh
Q 048364 90 GYSKSGNVCEARDFFERMP--LRN-VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ-MTIGAVLSGCSHLGSVG 165 (400)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~--~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~ 165 (400)
.+...|+.++|...|.+.. .|. ..+|+.|...+-..|+...|++.|++.+ .+.|+- ..|..+-..|...+.++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv---kldP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV---KLDPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhh---cCCCcchHHHhhHHHHHHHHhcch
Confidence 5667889999988887755 332 4688889999999999999999999988 556653 47888888888888888
Q ss_pred hhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CC-cccHHHHHHHHHhCCChhhHHHHHHHH
Q 048364 166 LLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--RN-VISWTALICGSAHRGYSEDALSLFEMM 242 (400)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m 242 (400)
. |...+....... +-...++..+...|..+|..|.|+..|++..+ |+ +..|+.|..++-..|+..+|...|.+.
T Consensus 270 ~--Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 270 R--AVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred H--HHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 8 777776665543 22456677788888899999999999998876 33 468999999999999999999999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccH-
Q 048364 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR-IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNV- 319 (400)
Q Consensus 243 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~- 319 (400)
.... .-.....+.|...+...|.++.|..+|....+ +.|. ...++.|...|-.+|++++|+..+++. .+.|+.
T Consensus 347 L~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fA 422 (966)
T KOG4626|consen 347 LRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFA 422 (966)
T ss_pred HHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHH
Confidence 8762 22456788899999999999999999998884 3443 467888999999999999999999988 888865
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 320 IIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
..|+.+...|-..|+.+.|.+.+.+++..+ | .-..++..|..+|...|+..+|+.-++...+
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~n-P-t~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQIN-P-TFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcC-c-HHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 478999999999999999999999999988 8 7788899999999999999999999988876
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=5.9e-20 Score=172.81 Aligned_cols=356 Identities=11% Similarity=-0.004 Sum_probs=277.0
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHcC
Q 048364 19 ILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPER---NAVTWNTMIKGYSKS 94 (400)
Q Consensus 19 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~ 94 (400)
+......+.+.|+++.|...|++.++. .|+...|..+..++ ..|++++|+..++...+. +...|..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 445667778889999999999998874 56677788888888 999999999999988753 456788899999999
Q ss_pred CChHHHHHHHhhCCC---------------------------------CChhhHHHHHH---------------------
Q 048364 95 GNVCEARDFFERMPL---------------------------------RNVASWSAMIA--------------------- 120 (400)
Q Consensus 95 ~~~~~a~~~~~~~~~---------------------------------~~~~~~~~l~~--------------------- 120 (400)
|++++|+..|..... ++...+..+..
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 999999875543210 00000000000
Q ss_pred ---------HH------HhcCCcchHHHHHHHHHhcCCCCCC-HHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccch
Q 048364 121 ---------AY------LNAGAYDPGLKLFREMISNEGLTPD-QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN 184 (400)
Q Consensus 121 ---------~~------~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 184 (400)
.. ...+++++|.+.|++........|+ ...+..+...+...|+++. |...++...+... ..
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~e--A~~~~~kal~l~P-~~ 364 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLE--ALADLSKSIELDP-RV 364 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHcCC-Cc
Confidence 00 1125788999999998833233453 4567777888889999999 9999998887642 24
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 261 (400)
...|..+..++...|++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. +.+...+..+..++
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~ 443 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHH
Confidence 56788889999999999999999998875 356788889999999999999999999998863 23567777888899
Q ss_pred HhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccH-H-------HHHHHHHHHHhc
Q 048364 262 VHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNV-I-------IWGSFLAACKEH 332 (400)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~-~-------~~~~l~~~~~~~ 332 (400)
.+.|++++|...++...+ ..+.+...++.+...+...|++++|.+.|++. .+.|+. . .++.....+...
T Consensus 444 ~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 999999999999999985 33446788899999999999999999999997 444431 1 122222334457
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 333 KQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 333 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
|++++|..++++++... | .+..++..++.++...|++++|++.|++..+.
T Consensus 522 ~~~~eA~~~~~kAl~l~-p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 522 QDFIEAENLCEKALIID-P-ECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hhHHHHHHHHHHHHhcC-C-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999998 8 77778999999999999999999999998754
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=5.6e-20 Score=172.54 Aligned_cols=325 Identities=12% Similarity=-0.011 Sum_probs=245.8
Q ss_pred hhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHH
Q 048364 17 FSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE--R-NAVTWNTMIKGYS 92 (400)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~ 92 (400)
.....++..+.+.|++++|..+++..+...+.+....+ .+.... ..|++++|...++++.. | +...+..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~-~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLR-RWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHH-HHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 33556677788889999999999998887655433333 444555 89999999999998874 3 4567888888889
Q ss_pred cCCChHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhh
Q 048364 93 KSGNVCEARDFFERMPL--R-NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMG 169 (400)
Q Consensus 93 ~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a 169 (400)
+.|++++|+..|++... | +...+..+...+...|++++|...++.+... .|+.......+..+...|++++ |
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~---~P~~~~a~~~~~~l~~~g~~~e--A 196 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE---VPPRGDMIATCLSFLNKSRLPE--D 196 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHcCCHHH--H
Confidence 99999999999988762 3 5668888888999999999999999887622 3333222222334778899988 8
Q ss_pred hhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhh----HHHHHHHH
Q 048364 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSED----ALSLFEMM 242 (400)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~----a~~~~~~m 242 (400)
...++.+.+....++......+..++...|++++|...+++..+ .+...+..+...+...|++++ |...|++.
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 88888877765444444555567788889999999999988775 245567778888899999885 78888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHHH
Q 048364 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVII 321 (400)
Q Consensus 243 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~ 321 (400)
.+.. +.+...+..+...+...|++++|...++...+. -+.+...+..+..+|.+.|++++|...++++ ...|+...
T Consensus 277 l~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 277 LQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSK 353 (656)
T ss_pred HhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH
Confidence 8763 235677888888899999999999999988843 2334566777888899999999999999888 55665543
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 322 -WGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 322 -~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
+..+..++...|+.++|...|+++.+.. |
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~-P 383 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQAR-A 383 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-h
Confidence 3445667888999999999999999887 6
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=2.6e-20 Score=161.16 Aligned_cols=354 Identities=13% Similarity=0.169 Sum_probs=298.2
Q ss_pred hhHHHHhCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHH-H-HhCCHHHHHHHHhhCCC--
Q 048364 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE-Y-VVTSFGFARKLFDELPE-- 78 (400)
Q Consensus 3 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~-~~g~~~~a~~~~~~~~~-- 78 (400)
+++.|.+.. +-....|..+..++...|+.+.|.+.|...++ +.|+.....+-+.. + ..|++.+|...+.+..+
T Consensus 138 ~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q 214 (966)
T KOG4626|consen 138 LYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ 214 (966)
T ss_pred HHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC
Confidence 444554442 33578899999999999999999999999988 56776655544444 4 89999999999988775
Q ss_pred CC-hhhHHHHHHHHHcCCChHHHHHHHhhCCCCC---hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCH-HHHHH
Q 048364 79 RN-AVTWNTMIKGYSKSGNVCEARDFFERMPLRN---VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ-MTIGA 153 (400)
Q Consensus 79 ~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~ 153 (400)
|. ...|+.|...+-.+|++..|+..|++...-| ..+|-.|...|...+.+++|+..|.+.. ...|+. ..+..
T Consensus 215 p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl---~lrpn~A~a~gN 291 (966)
T KOG4626|consen 215 PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRAL---NLRPNHAVAHGN 291 (966)
T ss_pred CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHH---hcCCcchhhccc
Confidence 43 4679999999999999999999999987433 4689999999999999999999999988 556754 57788
Q ss_pred HHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCC
Q 048364 154 VLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRG 230 (400)
Q Consensus 154 ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~ 230 (400)
+...|...|.++. |...++...+.... -+..|+.|..++-..|+..+|.+.|++... | ...+.+.|...|...|
T Consensus 292 la~iYyeqG~ldl--AI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~ 368 (966)
T KOG4626|consen 292 LACIYYEQGLLDL--AIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQG 368 (966)
T ss_pred eEEEEeccccHHH--HHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc
Confidence 8888999999999 99999988876532 367899999999999999999999999876 3 4568899999999999
Q ss_pred ChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC-hhhHHHHHHHHHhcCChHHHHH
Q 048364 231 YSEDALSLFEMMQATGVKPN-EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR-IQHYGCMVDLFGKAGFLEEAYE 308 (400)
Q Consensus 231 ~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~ 308 (400)
..++|..+|....+- .|. ...++.|...|-+.|++++|...|++.. .+.|+ ...|+.+...|...|+.+.|.+
T Consensus 369 ~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q 443 (966)
T KOG4626|consen 369 KIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQ 443 (966)
T ss_pred cchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHH
Confidence 999999999998774 444 4678899999999999999999999998 56776 4789999999999999999999
Q ss_pred HHHhc-cCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchH
Q 048364 309 VIRTM-RLEPN-VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWE 372 (400)
Q Consensus 309 ~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 372 (400)
.+.+. .+.|. ...++.|...|-..|++.+|++.+++.++.. | +.+.+|-.++.+..--.+|.
T Consensus 444 ~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk-P-DfpdA~cNllh~lq~vcdw~ 507 (966)
T KOG4626|consen 444 CYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK-P-DFPDAYCNLLHCLQIVCDWT 507 (966)
T ss_pred HHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC-C-CCchhhhHHHHHHHHHhccc
Confidence 99988 77785 4578999999999999999999999999999 8 88899988888765444443
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.87 E-value=8.9e-19 Score=175.37 Aligned_cols=346 Identities=9% Similarity=0.020 Sum_probs=181.4
Q ss_pred HHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC--CCh---hhHH-----------
Q 048364 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE--RNA---VTWN----------- 85 (400)
Q Consensus 23 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~--~~~---~~~~----------- 85 (400)
...+...|++++|...|++.++..+. +...+..+...+ +.|++++|+..|++..+ |+. ..|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 44556778999999999998886433 566777777778 89999999999888764 321 1121
Q ss_pred -HHHHHHHcCCChHHHHHHHhhCC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCC-HHHHHHHHHHh--
Q 048364 86 -TMIKGYSKSGNVCEARDFFERMP---LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD-QMTIGAVLSGC-- 158 (400)
Q Consensus 86 -~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~-- 158 (400)
.....+.+.|++++|++.|++.. +.+...+..+..++...|++++|++.|++..+ ..|+ ...+..+...+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~---~~p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALR---MDPGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHh
Confidence 12345678899999999998876 23556777888889999999999999988872 2343 33333333333
Q ss_pred ----------------------------------------hcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhc
Q 048364 159 ----------------------------------------SHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198 (400)
Q Consensus 159 ----------------------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (400)
...|++++ |...++...+.... +..++..+...|.+.
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~e--A~~~~~~Al~~~P~-~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQ--AAELQRQRLALDPG-SVWLTYRLAQDLRQA 508 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHH--HHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 23344444 44444444433211 233344444455555
Q ss_pred CCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHhcCC
Q 048364 199 GFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEM---------TFTGVLTACVHTGL 266 (400)
Q Consensus 199 g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---------~~~~l~~~~~~~~~ 266 (400)
|++++|...++++.+ | +...+..+...+...++.++|+..++.+......++.. .+......+...|+
T Consensus 509 G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 555555555544432 1 12222222222233333333333333221110000000 00111222233333
Q ss_pred hhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048364 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQ 344 (400)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 344 (400)
.++|.++++. .+++...+..+...+.+.|++++|++.|++. ...| +...+..++..+...|++++|...++.
T Consensus 589 ~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 589 EAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3333333320 1223334444555555555555555555555 3233 334455555555555555555555555
Q ss_pred HHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 345 ALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 345 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
+.+.. | .+..+...+..++...|++++|.++++++..
T Consensus 663 ll~~~-p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 663 LPATA-N-DSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HhccC-C-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 55444 4 4444555555555555555555555555544
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=1.1e-18 Score=163.80 Aligned_cols=345 Identities=9% Similarity=-0.056 Sum_probs=266.9
Q ss_pred ccchhHHHHHHHHHHHHhCc--ccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHcCCChHHHH
Q 048364 28 HFNNLTVIHHLHSHILKLGF--ISHVYVATSLLHEY-VVTSFGFARKLFDELPE--R-NAVTWNTMIKGYSKSGNVCEAR 101 (400)
Q Consensus 28 ~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~ 101 (400)
+..+++.---++....+.-- ..+..-...++..+ +.|++++|..+++.... | +...+..++.+....|++++|+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~ 96 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVL 96 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHH
Confidence 44555555444444322210 11222233344455 99999999999998864 2 4556666777788899999999
Q ss_pred HHHhhCC--CC-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCC-HHHHHHHHHHhhcccchhhhhhhhhhhHHH
Q 048364 102 DFFERMP--LR-NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD-QMTIGAVLSGCSHLGSVGLLMGKSAHGFIV 177 (400)
Q Consensus 102 ~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~ 177 (400)
..|+++. .| +...+..+...+.+.|++++|...+++.. .+.|+ ...+..+..++...|+.++ |...++.+.
T Consensus 97 ~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al---~l~P~~~~a~~~la~~l~~~g~~~e--A~~~~~~~~ 171 (656)
T PRK15174 97 QVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAW---LAFSGNSQIFALHLRTLVLMDKELQ--AISLARTQA 171 (656)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHCCChHH--HHHHHHHHH
Confidence 9999986 33 66788889999999999999999999998 34554 5577888899999999999 998888776
Q ss_pred hccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCC----cccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHH
Q 048364 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERN----VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253 (400)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 253 (400)
.....+.. .+..+ ..+...|++++|...++.+.+.+ ...+..+...+...|++++|+..++++.... +.+...
T Consensus 172 ~~~P~~~~-a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 172 QEVPPRGD-MIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HhCCCCHH-HHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 66544333 33333 34788999999999999876532 2334455678899999999999999998864 335677
Q ss_pred HHHHHHHHHhcCChhh----HHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc-HHHHHHHHH
Q 048364 254 FTGVLTACVHTGLVDE----GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN-VIIWGSFLA 327 (400)
Q Consensus 254 ~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~-~~~~~~l~~ 327 (400)
+..+...+...|++++ |...++.+.+. .+.+...+..+...+...|++++|...+++. ...|+ ...+..+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~ 326 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 8888999999999986 89999999842 2346678899999999999999999999998 55564 456777889
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
++.+.|++++|...++++.+.. | .+...+..+..++...|++++|...|++..+.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~-P-~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREK-G-VTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-c-cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999988 7 55556666788899999999999999988754
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.86 E-value=6e-18 Score=169.49 Aligned_cols=370 Identities=10% Similarity=0.017 Sum_probs=277.8
Q ss_pred hhHHHHhCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccc-hhhhh------------HHHHHH-HhCCHHH
Q 048364 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISH-VYVAT------------SLLHEY-VVTSFGF 68 (400)
Q Consensus 3 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~------------~l~~~~-~~g~~~~ 68 (400)
.|++..+.. +-+...+..+..++.+.|++++|...|++.++..+... ...+. .....+ +.|++++
T Consensus 291 ~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~e 369 (1157)
T PRK11447 291 ELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQ 369 (1157)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHH
Confidence 344444432 34677888888999999999999999999888654321 11111 112344 8889999
Q ss_pred HHHHHhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHhhCCC--C-ChhhHHH-------------------------
Q 048364 69 ARKLFDELPE---RNAVTWNTMIKGYSKSGNVCEARDFFERMPL--R-NVASWSA------------------------- 117 (400)
Q Consensus 69 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~------------------------- 117 (400)
|+..|++..+ .+...+..+...+...|++++|++.|++... | +...+..
T Consensus 370 A~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~ 449 (1157)
T PRK11447 370 AERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQR 449 (1157)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHH
Confidence 9999988874 2456677788888999999999999888752 2 2222222
Q ss_pred -----------------HHHHHHhcCCcchHHHHHHHHHhcCCCCCC-HHHHHHHHHHhhcccchhhhhhhhhhhHHHhc
Q 048364 118 -----------------MIAAYLNAGAYDPGLKLFREMISNEGLTPD-QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179 (400)
Q Consensus 118 -----------------l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~ 179 (400)
+...+...|++++|++.|++.+ ...|+ ...+..+...+.+.|++++ |...++.+.+.
T Consensus 450 ~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al---~~~P~~~~~~~~LA~~~~~~G~~~~--A~~~l~~al~~ 524 (1157)
T PRK11447 450 RSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRL---ALDPGSVWLTYRLAQDLRQAGQRSQ--ADALMRRLAQQ 524 (1157)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHc
Confidence 2344557899999999999998 33564 4567788889999999999 99999998875
Q ss_pred cccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCC----c---------ccHHHHHHHHHhCCChhhHHHHHHHHHHCC
Q 048364 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEERN----V---------ISWTALICGSAHRGYSEDALSLFEMMQATG 246 (400)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~---------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 246 (400)
.. .+...+..+...+...++.++|...++.+.... . ..+..+...+...|+.++|..+++.
T Consensus 525 ~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~----- 598 (1157)
T PRK11447 525 KP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ----- 598 (1157)
T ss_pred CC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----
Confidence 43 244455555666778999999999999886421 1 1123456778899999999999872
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHH
Q 048364 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGS 324 (400)
Q Consensus 247 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~ 324 (400)
.+++...+..+...+.+.|++++|...|+.+.+. -+.+...+..++..|...|++++|++.++.. ...| +...+..
T Consensus 599 ~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~ 676 (1157)
T PRK11447 599 QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRR 676 (1157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHH
Confidence 2445567778888999999999999999999953 3446788999999999999999999999988 4455 4556777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCC-----chHHHHHHHHhhcccchHHHHHHHHHHhc-cccc
Q 048364 325 FLAACKEHKQFDMAERVIKQALRMVKPEND-----GGVFTLICDLYTMNEKWEGAERVRKLMLN-QNVR 387 (400)
Q Consensus 325 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~ 387 (400)
+..++...|++++|.+++++++... |... ...+..+...+...|++++|+..+++... .|+.
T Consensus 677 la~~~~~~g~~~eA~~~~~~al~~~-~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 677 VALAWAALGDTAAAQRTFNRLIPQA-KSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhhC-ccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 8889999999999999999999876 4222 24666778899999999999999998863 3443
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=3.2e-17 Score=157.24 Aligned_cols=189 Identities=9% Similarity=-0.009 Sum_probs=150.3
Q ss_pred HHHHhcCCHHHHHHHHHhccCCC---cc-cHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcC
Q 048364 193 DMYAKCGFLKYALMVFELMEERN---VI-SWTALICGSAHRGYSEDALSLFEMMQATGVKP---NEMTFTGVLTACVHTG 265 (400)
Q Consensus 193 ~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~ 265 (400)
..+...|++++|...|+.+.+.+ +. ....+...|...|++++|+..|+++....... .......+..++.+.|
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 34567799999999999998642 21 22335778999999999999999987653211 1345666777889999
Q ss_pred ChhhHHHHHHHhhhhcC----------CCCC---hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHH
Q 048364 266 LVDEGRKYFKMIDEEYD----------LEPR---IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACK 330 (400)
Q Consensus 266 ~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~ 330 (400)
++++|.++++.+..... -.|+ ...+..+...+...|++++|++.++++ ...| +...+..+...+.
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ 404 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999885311 0122 224556778899999999999999998 4445 5678888999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 331 EHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 331 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
..|++++|++.+++++... | .+...+..++..+...|++++|..+++++++
T Consensus 405 ~~g~~~~A~~~l~~al~l~-P-d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLE-P-RNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred hcCCHHHHHHHHHHHHhhC-C-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999999 8 8888999999999999999999999998875
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=5.9e-17 Score=152.63 Aligned_cols=328 Identities=12% Similarity=-0.001 Sum_probs=254.2
Q ss_pred CCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC-----------
Q 048364 11 SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE----------- 78 (400)
Q Consensus 11 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~----------- 78 (400)
.+.|+...|..+..++.+.|++++|.+.++..++..+. +...+..+..++ ..|++++|+..|.....
T Consensus 155 ~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~ 233 (615)
T TIGR00990 155 ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQ 233 (615)
T ss_pred hcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHH
Confidence 35678889999999999999999999999999986533 456777788888 99999999865533210
Q ss_pred ----------------------CChhhHHHHHHHH------------------------------------HcCCChHHH
Q 048364 79 ----------------------RNAVTWNTMIKGY------------------------------------SKSGNVCEA 100 (400)
Q Consensus 79 ----------------------~~~~~~~~l~~~~------------------------------------~~~~~~~~a 100 (400)
++...+..+...+ ...+++++|
T Consensus 234 ~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A 313 (615)
T TIGR00990 234 AVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEA 313 (615)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHH
Confidence 0000111110000 123578899
Q ss_pred HHHHhhCCC-----C-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCC-HHHHHHHHHHhhcccchhhhhhhhhh
Q 048364 101 RDFFERMPL-----R-NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD-QMTIGAVLSGCSHLGSVGLLMGKSAH 173 (400)
Q Consensus 101 ~~~~~~~~~-----~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~ 173 (400)
++.|+.... | +...|+.+...+...|++++|+..|++.. ...|+ ...|..+...+...|+++. |...+
T Consensus 314 ~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal---~l~P~~~~~~~~la~~~~~~g~~~e--A~~~~ 388 (615)
T TIGR00990 314 ARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI---ELDPRVTQSYIKRASMNLELGDPDK--AEEDF 388 (615)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHCCCHHH--HHHHH
Confidence 999988653 2 44678888899999999999999999998 34565 4578888889999999999 99999
Q ss_pred hHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC
Q 048364 174 GFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250 (400)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 250 (400)
+.+.+.. +.+..++..+...|...|++++|...|++..+ | +...+..+...+.+.|++++|+..|++..+.. +-+
T Consensus 389 ~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~ 466 (615)
T TIGR00990 389 DKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEA 466 (615)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 9887764 34577888999999999999999999999876 3 44567778889999999999999999988752 335
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC-hh-------hHHHHHHHHHhcCChHHHHHHHHhc-cCCcc-HH
Q 048364 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR-IQ-------HYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN-VI 320 (400)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~-------~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~-~~ 320 (400)
...++.+..++...|++++|...|+...+- .|+ .. .++.....+...|++++|.+++++. ...|+ ..
T Consensus 467 ~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~ 543 (615)
T TIGR00990 467 PDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDI 543 (615)
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 678888999999999999999999998842 222 11 1222223344579999999999987 55664 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 321 IWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 321 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
.+..+...+.+.|++++|...|+++.+..
T Consensus 544 a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 544 AVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 78889999999999999999999999887
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.81 E-value=1.5e-15 Score=146.48 Aligned_cols=187 Identities=10% Similarity=0.092 Sum_probs=134.5
Q ss_pred HHHHHhcCCHHHHHHHHHhccC--CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh
Q 048364 192 VDMYAKCGFLKYALMVFELMEE--RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269 (400)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 269 (400)
...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...+++..+.. +++...+..+...+...|++++
T Consensus 516 A~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHH
Confidence 3344567777777777766553 333445555666777777777777777776653 1222223333334445588888
Q ss_pred HHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048364 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALR 347 (400)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (400)
|...+++..+ ..|+...+..+..++.+.|++++|...+++. ...| +...++.+..++...|++++|+..++++++
T Consensus 595 Al~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 595 ALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888873 3466777888888888888888888888888 5556 445677777788888888898888888888
Q ss_pred cCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 348 MVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 348 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
.. | .++.++..+..++...|++++|+..+++..+.
T Consensus 672 l~-P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 672 GL-P-DDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred hC-C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 88 8 78888888888888889999888888888753
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=4.8e-16 Score=149.26 Aligned_cols=335 Identities=10% Similarity=-0.014 Sum_probs=243.1
Q ss_pred CCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC--C-ChhhHHHHH
Q 048364 13 PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE--R-NAVTWNTMI 88 (400)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~--~-~~~~~~~l~ 88 (400)
+.+...+..+..++...|++++|.++|+..++..+. +...+..+...+ ..|++++|+..+++... | +.. +..+.
T Consensus 46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la 123 (765)
T PRK10049 46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALA 123 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Confidence 334446888888888889999999999988875432 344555666666 88999999998888764 3 445 77778
Q ss_pred HHHHcCCChHHHHHHHhhCC--CC-ChhhHHHHHHHHHhcCCcchHHHHH------------------------------
Q 048364 89 KGYSKSGNVCEARDFFERMP--LR-NVASWSAMIAAYLNAGAYDPGLKLF------------------------------ 135 (400)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~------------------------------ 135 (400)
.++...|+.++|+..++++. .| +...+..+..++...|..++|++.+
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~ 203 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTR 203 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccccc
Confidence 88888899999999988876 23 4455555666666556555444444
Q ss_pred ----------------HHHHhcCCCCCCHH-HHH----HHHHHhhcccchhhhhhhhhhhHHHhcccc-chHHHHHHHHH
Q 048364 136 ----------------REMISNEGLTPDQM-TIG----AVLSGCSHLGSVGLLMGKSAHGFIVKNEWE-LNEQIATILVD 193 (400)
Q Consensus 136 ----------------~~m~~~~~~~p~~~-~~~----~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 193 (400)
+.+.+.....|+.. .+. ..+.++...|+.++ |...++.+.+.+.+ |+. ....+..
T Consensus 204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~e--A~~~~~~ll~~~~~~P~~-a~~~la~ 280 (765)
T PRK10049 204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKD--VISEYQRLKAEGQIIPPW-AQRWVAS 280 (765)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHH--HHHHHHHhhccCCCCCHH-HHHHHHH
Confidence 44432112223221 111 11334566788888 99999998887643 332 2233577
Q ss_pred HHHhcCCHHHHHHHHHhccCCCc-------ccHHHHHHHHHhCCChhhHHHHHHHHHHCCC-----------CCCH---H
Q 048364 194 MYAKCGFLKYALMVFELMEERNV-------ISWTALICGSAHRGYSEDALSLFEMMQATGV-----------KPNE---M 252 (400)
Q Consensus 194 ~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-----------~p~~---~ 252 (400)
+|...|++++|...|+++.+.+. .....+..++...|++++|..+++++..... .|+. .
T Consensus 281 ~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~ 360 (765)
T PRK10049 281 AYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ 360 (765)
T ss_pred HHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence 89999999999999999865321 2355566788999999999999999987521 1232 3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc-HHHHHHHHHHHH
Q 048364 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN-VIIWGSFLAACK 330 (400)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~-~~~~~~l~~~~~ 330 (400)
.+..+...+...|+.++|++.++++.. ..+.+...+..+...+...|++++|++.+++. ...|+ ...+...+..+.
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al 438 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTAL 438 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 455677788899999999999999985 34556788899999999999999999999998 66675 556677777899
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCch
Q 048364 331 EHKQFDMAERVIKQALRMVKPENDGG 356 (400)
Q Consensus 331 ~~~~~~~a~~~~~~~~~~~~~~~~~~ 356 (400)
..|++++|+.+++++++.. | .++.
T Consensus 439 ~~~~~~~A~~~~~~ll~~~-P-d~~~ 462 (765)
T PRK10049 439 DLQEWRQMDVLTDDVVARE-P-QDPG 462 (765)
T ss_pred HhCCHHHHHHHHHHHHHhC-C-CCHH
Confidence 9999999999999999998 7 5543
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=7.7e-15 Score=138.79 Aligned_cols=346 Identities=12% Similarity=0.057 Sum_probs=160.5
Q ss_pred cccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChh-hHHHH--HHHHHcCCChHHHHH
Q 048364 27 THFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERNAV-TWNTM--IKGYSKSGNVCEARD 102 (400)
Q Consensus 27 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~-~~~~l--~~~~~~~~~~~~a~~ 102 (400)
.+.|+++.|++.|+++.+..+.....++ .++..+ ..|+.++|+..+++...|+.. .+..+ ...+...|++++|++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3556666666666666664332112233 555555 666666666666666654322 22222 334555566666666
Q ss_pred HHhhCCC--C-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhc
Q 048364 103 FFERMPL--R-NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN 179 (400)
Q Consensus 103 ~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~ 179 (400)
+|+++.. | +...+..++..+...++.++|++.++++. ...|+...+..++..+...++... +...++.+.+.
T Consensus 124 ly~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~---~~dp~~~~~l~layL~~~~~~~~~--AL~~~ekll~~ 198 (822)
T PRK14574 124 LWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELA---ERDPTVQNYMTLSYLNRATDRNYD--ALQASSEAVRL 198 (822)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc---ccCcchHHHHHHHHHHHhcchHHH--HHHHHHHHHHh
Confidence 6666552 2 34455555566666666666666666665 234444444333222322333333 45555554444
Q ss_pred cccchHHHHHHHHHHHHhcCCHHHHHHHHHhcc-----------------------------------------------
Q 048364 180 EWELNEQIATILVDMYAKCGFLKYALMVFELME----------------------------------------------- 212 (400)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------------------------------------------- 212 (400)
. +.+...+..+..+..+.|-...|.++..+-+
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 3 1123333333333333333322222222111
Q ss_pred -C-----CCcc-cH----HHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhc
Q 048364 213 -E-----RNVI-SW----TALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY 281 (400)
Q Consensus 213 -~-----~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 281 (400)
. |... .| --.+-++...|+..++++.|+.|...|.+....+-..+..+|...+++++|+.+++.+....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 0 1000 00 01223344455555555555555555444334445555555555555555555555554321
Q ss_pred C----CCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc---------------cH-HHHHHHHHHHHhcCCHHHHHH
Q 048364 282 D----LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP---------------NV-IIWGSFLAACKEHKQFDMAER 340 (400)
Q Consensus 282 ~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p---------------~~-~~~~~l~~~~~~~~~~~~a~~ 340 (400)
+ ..++......|.-+|...+++++|..+++++ ...| |- ..+..++..+.-.|+..+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 1 0112222344555555555555555555554 1011 11 112223444445555555555
Q ss_pred HHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHH
Q 048364 341 VIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLM 381 (400)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 381 (400)
.++++.... | .+......+...+...|.+.+|.+.++..
T Consensus 438 ~le~l~~~a-P-~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 438 KLEDLSSTA-P-ANQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred HHHHHHHhC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 555555555 5 55555555555555555555555555443
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=1.3e-14 Score=137.17 Aligned_cols=352 Identities=11% Similarity=0.021 Sum_probs=255.7
Q ss_pred HHHHHhcccchhHHHHHHHHHHHHhCcccchh---hhhHHHHHH-HhCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHc
Q 048364 21 HILKSCTHFNNLTVIHHLHSHILKLGFISHVY---VATSLLHEY-VVTSFGFARKLFDELPE--R-NAVTWNTMIKGYSK 93 (400)
Q Consensus 21 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~-~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~ 93 (400)
.++..+...|+.++|+.++++.. .|+.. ....+...+ ..|++++|.++|+++.+ | +...+..++..+..
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~ 148 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQAD 148 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Confidence 78888888899999999999987 33222 222234466 77999999999999985 3 45667777888999
Q ss_pred CCChHHHHHHHhhCCCCCh--hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCC-HHHHHHHHHHhhcccchhhhhhh
Q 048364 94 SGNVCEARDFFERMPLRNV--ASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD-QMTIGAVLSGCSHLGSVGLLMGK 170 (400)
Q Consensus 94 ~~~~~~a~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~a~ 170 (400)
.++.++|++.++++.+.++ ..+..++..+...++..+|++.++++. ...|+ ...+..+..+..+.|-... |.
T Consensus 149 ~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll---~~~P~n~e~~~~~~~~l~~~~~~~~--a~ 223 (822)
T PRK14574 149 AGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV---RLAPTSEEVLKNHLEILQRNRIVEP--AL 223 (822)
T ss_pred cCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCcHH--HH
Confidence 9999999999999885443 344333334444566666999999998 23454 4444555555555543322 11
Q ss_pred hh------------------------------------------------hhHHHh-ccccchH-H----HHHHHHHHHH
Q 048364 171 SA------------------------------------------------HGFIVK-NEWELNE-Q----IATILVDMYA 196 (400)
Q Consensus 171 ~~------------------------------------------------~~~~~~-~~~~~~~-~----~~~~l~~~~~ 196 (400)
++ ++.+.. .+..|.. . ..--.+-++.
T Consensus 224 ~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~ 303 (822)
T PRK14574 224 RLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL 303 (822)
T ss_pred HHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH
Confidence 11 111111 1111211 1 1123345667
Q ss_pred hcCCHHHHHHHHHhccCCC----cccHHHHHHHHHhCCChhhHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCh
Q 048364 197 KCGFLKYALMVFELMEERN----VISWTALICGSAHRGYSEDALSLFEMMQATG-----VKPNEMTFTGVLTACVHTGLV 267 (400)
Q Consensus 197 ~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~l~~~~~~~~~~ 267 (400)
..|++.++.+.|+.+..+. ..+-..+.++|...+++++|..+|+.+.... ..++......|.-++...+++
T Consensus 304 ~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~ 383 (822)
T PRK14574 304 VRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQL 383 (822)
T ss_pred HhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccH
Confidence 8899999999999998532 3355678899999999999999999997643 123444467899999999999
Q ss_pred hhHHHHHHHhhhhcCC----------CCCh---hhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhc
Q 048364 268 DEGRKYFKMIDEEYDL----------EPRI---QHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEH 332 (400)
Q Consensus 268 ~~a~~~~~~~~~~~~~----------~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 332 (400)
++|..+++.+.+.... .|+. ..+..++..+.-.|++.+|++.++++ ...| |......+...+...
T Consensus 384 ~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~R 463 (822)
T PRK14574 384 DKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLAR 463 (822)
T ss_pred HHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 9999999999852110 1221 23445677889999999999999999 4455 788899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 333 KQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 333 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
|.+.+|+..++.+.... | .+..+....+.++...|+|.+|..+.+...+
T Consensus 464 g~p~~A~~~~k~a~~l~-P-~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 464 DLPRKAEQELKAVESLA-P-RSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred CCHHHHHHHHHHHhhhC-C-ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 99999999999988887 8 8899999999999999999999888876643
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.76 E-value=1.6e-14 Score=139.43 Aligned_cols=361 Identities=9% Similarity=-0.011 Sum_probs=263.8
Q ss_pred CCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC-C-----Chhh
Q 048364 11 SVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE-R-----NAVT 83 (400)
Q Consensus 11 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~-~-----~~~~ 83 (400)
.+.|.......-..+....+...++.+.+..|.+.... +....-.+.-.. ..|+.++|..+|+...+ + +...
T Consensus 337 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l 415 (987)
T PRK09782 337 ATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTL 415 (987)
T ss_pred cCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHH
Confidence 35555554322222223446777788888888776332 222222222222 88889999999988775 2 2223
Q ss_pred HHHHHHHHHcCCC---hHHHHHH-------------------------HhhCC---CC--ChhhHHHHHHHHHhcCCcch
Q 048364 84 WNTMIKGYSKSGN---VCEARDF-------------------------FERMP---LR--NVASWSAMIAAYLNAGAYDP 130 (400)
Q Consensus 84 ~~~l~~~~~~~~~---~~~a~~~-------------------------~~~~~---~~--~~~~~~~l~~~~~~~g~~~~ 130 (400)
-+.++..|.+.+. ..++..+ +.... .+ +...|..+..++.. +++++
T Consensus 416 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~e 494 (987)
T PRK09782 416 MARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGV 494 (987)
T ss_pred HHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHH
Confidence 4466677776655 3333333 22222 22 55677888887776 89999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 048364 131 GLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFEL 210 (400)
Q Consensus 131 a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 210 (400)
|+..+.+.. ...|+......+...+...|+++. |...++.+... +|+...+..+..++.+.|+.++|...++.
T Consensus 495 Ai~a~~~Al---~~~Pd~~~~L~lA~al~~~Gr~ee--Ai~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 495 ALYAWLQAE---QRQPDAWQHRAVAYQAYQVEDYAT--ALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred HHHHHHHHH---HhCCchHHHHHHHHHHHHCCCHHH--HHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999888877 334776554455556678999999 88888887554 33344566778889999999999999998
Q ss_pred ccCCCcccHHHHH---HHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCCh
Q 048364 211 MEERNVISWTALI---CGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRI 287 (400)
Q Consensus 211 ~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 287 (400)
..+.++...+... ......|++++|...+++..+. .|+...+..+..++.+.|+.++|...+++... --+.+.
T Consensus 568 AL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~ 643 (987)
T PRK09782 568 AEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNS 643 (987)
T ss_pred HHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCH
Confidence 8875444443333 3344559999999999999876 56788899999999999999999999999985 234466
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHh
Q 048364 288 QHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365 (400)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 365 (400)
..++.+..++...|++++|.+.+++. ...| +...+..+..++...|++++|+..++++++.. | .+..+........
T Consensus 644 ~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~-P-~~a~i~~~~g~~~ 721 (987)
T PRK09782 644 NYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI-D-NQALITPLTPEQN 721 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C-CCchhhhhhhHHH
Confidence 78888999999999999999999988 5566 56688999999999999999999999999999 8 7888888889999
Q ss_pred hcccchHHHHHHHHHHhcccc
Q 048364 366 TMNEKWEGAERVRKLMLNQNV 386 (400)
Q Consensus 366 ~~~g~~~~a~~~~~~m~~~~~ 386 (400)
.+..+++.|.+-+++....++
T Consensus 722 ~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 722 QQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHHHHHHHhhcCc
Confidence 999999999998887765444
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=4.5e-14 Score=117.87 Aligned_cols=353 Identities=14% Similarity=0.102 Sum_probs=200.4
Q ss_pred ccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH---HhCCHHHH-HH-----------------------HHhhCCCCC
Q 048364 28 HFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY---VVTSFGFA-RK-----------------------LFDELPERN 80 (400)
Q Consensus 28 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~g~~~~a-~~-----------------------~~~~~~~~~ 80 (400)
..|.+..+.-+|+.|.+.|.+.+...-..++... ......-| .+ ++-+....+
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT 206 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKT 206 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCC
Confidence 4567777777777777777665555544444432 11111110 11 222233346
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHhhCCC----CChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 048364 81 AVTWNTMIKGYSKSGNVCEARDFFERMPL----RNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLS 156 (400)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~ 156 (400)
..+|.++|.++|+--..+.|.+++++-.. -+..+||.+|.+-.- ..-.++..+|. ...+.||..|+|++++
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMi-sqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMI-SQKMTPNLFTFNALLS 281 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHH-HhhcCCchHhHHHHHH
Confidence 67889999999999889999999988763 366778877764322 22277888888 7788899999999999
Q ss_pred Hhhcccchhh--hhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHH-HHHHHHhccC------------CCcccHHH
Q 048364 157 GCSHLGSVGL--LMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKY-ALMVFELMEE------------RNVISWTA 221 (400)
Q Consensus 157 ~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~------------~~~~~~~~ 221 (400)
+.++.|+++. ..+.+++.+|++.|++|...+|.-++..+++.++..+ |..++.++.. .|...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 8888886654 2356778888888999988888888888888777644 4444444331 12333444
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHCC----CCCCH---HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHH
Q 048364 222 LICGSAHRGYSEDALSLFEMMQATG----VKPNE---MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294 (400)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~m~~~~----~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 294 (400)
.+..|....+.+-|.++-.-+.... +.|+. ..|..+....|+....+.....|+.|.-. -.-|+..+...++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~-~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS-AYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-eecCCchhHHHHH
Confidence 5555555555555544433222110 12221 22344444444444445455555544421 3334444444444
Q ss_pred HHHHhcCChHHHHHHHHhc---------------------------------------------------------cCCc
Q 048364 295 DLFGKAGFLEEAYEVIRTM---------------------------------------------------------RLEP 317 (400)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~---------------------------------------------------------~~~p 317 (400)
++....|.++-.-+++..+ ...-
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~ 520 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW 520 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC
Confidence 4444444444333333332 1111
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C-CCCchHHHHHHHHhhcccchHHHHHHHHHHhcccc
Q 048364 318 NVIIWGSFLAACKEHKQFDMAERVIKQALRMVK--P-ENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386 (400)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 386 (400)
.....+...-.+.+.|+.++|.+++.-..+.+. | .|...+...++..-...++...|..+++-|...++
T Consensus 521 ~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 521 PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 233344455556677777777777777654442 1 02222333455555566667777777776655444
No 26
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=1.2e-16 Score=135.73 Aligned_cols=256 Identities=16% Similarity=0.151 Sum_probs=111.8
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHH-HHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHH
Q 048364 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTI-GAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA 196 (400)
Q Consensus 118 l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (400)
+...+.+.|++++|++++++.. ....+|+...| ..+...+...++.+. +...++.+...+.. ++..+..++.. .
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~-~~~~~~~~~~~~~~~a~La~~~~~~~~--A~~ay~~l~~~~~~-~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAA-QKIAPPDDPEYWRLLADLAWSLGDYDE--AIEAYEKLLASDKA-NPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccc-ccccccccccccccccccccccccccc--cccccccccccccc-ccccccccccc-c
Confidence 3455556666666666664433 11112333332 333334445556666 66666666555433 44555566666 6
Q ss_pred hcCCHHHHHHHHHhccC--CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhhHHHH
Q 048364 197 KCGFLKYALMVFELMEE--RNVISWTALICGSAHRGYSEDALSLFEMMQATG-VKPNEMTFTGVLTACVHTGLVDEGRKY 273 (400)
Q Consensus 197 ~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~ 273 (400)
..+++++|.+++...-+ +++..+..++..+...++++++..+++++.... .+++...|..+...+.+.|+.++|...
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 78888888888876643 566677788888999999999999999987543 345677788888899999999999999
Q ss_pred HHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 274 FKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
+++..+. .+.+......++..+...|+.+++.++++.. ..+.|...+..+..+|...|+.++|...+++..+.. |
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 9999953 2335778888999999999999988888877 223455677889999999999999999999999988 8
Q ss_pred CCCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 352 ENDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 352 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
.|+.+...++.++...|+.++|.++.++..
T Consensus 246 -~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 -DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -T-HHHHHHHHHHHT----------------
T ss_pred -cccccccccccccccccccccccccccccc
Confidence 899999999999999999999999887664
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.66 E-value=3.5e-13 Score=122.39 Aligned_cols=314 Identities=13% Similarity=0.131 Sum_probs=209.0
Q ss_pred HhCCHHHHHHHHhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHhhC---CCCChhhHHHHHHHHHhcCCcchHHHHH
Q 048364 62 VVTSFGFARKLFDELPE---RNAVTWNTMIKGYSKSGNVCEARDFFERM---PLRNVASWSAMIAAYLNAGAYDPGLKLF 135 (400)
Q Consensus 62 ~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 135 (400)
..|++++|.+++.++.. .+...|.+|...|-+.|+.+++...+-.. .+.|...|..+.....+.|++++|.-.|
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 45666666666666653 24455666666666666666666554332 2335566666666666666666666666
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHH----HHHHHHHHhcCCHHHHHHHHHhc
Q 048364 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIA----TILVDMYAKCGFLKYALMVFELM 211 (400)
Q Consensus 136 ~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~ 211 (400)
.+.++. -+++...+---...|-+.|+... |...+..+.....+.+..-+ -..++.|...++-+.|.+.++..
T Consensus 231 ~rAI~~--~p~n~~~~~ers~L~~~~G~~~~--Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 231 SRAIQA--NPSNWELIYERSSLYQKTGDLKR--AMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHhc--CCcchHHHHHHHHHHHHhChHHH--HHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666611 12333344444555666666666 66666666555443232222 22344555566667777777665
Q ss_pred cC-----CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCC---------------------------CCCHHHHHHHHH
Q 048364 212 EE-----RNVISWTALICGSAHRGYSEDALSLFEMMQATGV---------------------------KPNEMTFTGVLT 259 (400)
Q Consensus 212 ~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---------------------------~p~~~~~~~l~~ 259 (400)
.. -+...++.++..|.+..+++.|......+..... .++... --+.-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhh
Confidence 54 2445677777788888888888777777665211 222222 12223
Q ss_pred HHHhcCChhhHHHHHHHhhhhcCC--CCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCC--ccHHHHHHHHHHHHhcCC
Q 048364 260 ACVHTGLVDEGRKYFKMIDEEYDL--EPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLE--PNVIIWGSFLAACKEHKQ 334 (400)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~--p~~~~~~~l~~~~~~~~~ 334 (400)
++......+....+...+..+ .. ..+...|.-+..+|...|++.+|+.+|..+ ... .+...|-.+..+|...|.
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 344555555555566666533 43 335678999999999999999999999999 222 256789999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 335 FDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 335 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
+++|.+.++.++... | .+..+-..|...+...|+.++|.+.+..+..
T Consensus 465 ~e~A~e~y~kvl~~~-p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILA-P-DNLDARITLASLYQQLGNHEKALETLEQIIN 511 (895)
T ss_pred HHHHHHHHHHHHhcC-C-CchhhhhhHHHHHHhcCCHHHHHHHHhcccC
Confidence 999999999999999 8 8999999999999999999999999998873
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.66 E-value=1.5e-13 Score=125.59 Aligned_cols=115 Identities=10% Similarity=0.142 Sum_probs=70.1
Q ss_pred hhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--cCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048364 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--RLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344 (400)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 344 (400)
.++|+++|.+..+ .-+-|...-|-+.-.++..|++.+|..+|... ....+..+|-.+..+|+..|++..|+++|+.
T Consensus 628 ~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~ 705 (1018)
T KOG2002|consen 628 QEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYEN 705 (1018)
T ss_pred HHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHH
Confidence 4556666665553 22335555555666666666666776666666 1122334566666677777777777777776
Q ss_pred HHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 345 ALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 345 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
..+...+..++.+...|.+++.+.|.+.+|.+.+.....
T Consensus 706 ~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 706 CLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 666655556666667777777777777666666555443
No 29
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=2.7e-13 Score=120.50 Aligned_cols=276 Identities=12% Similarity=0.029 Sum_probs=201.2
Q ss_pred HhCCHHHHHHHHhhCCCC--Chhh-HHHHHHHHHcCCChHHHHHHHhhCCC--CChhhHH--HHHHHHHhcCCcchHHHH
Q 048364 62 VVTSFGFARKLFDELPER--NAVT-WNTMIKGYSKSGNVCEARDFFERMPL--RNVASWS--AMIAAYLNAGAYDPGLKL 134 (400)
Q Consensus 62 ~~g~~~~a~~~~~~~~~~--~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~--~l~~~~~~~g~~~~a~~~ 134 (400)
..|+++.|.+.+....+. ++.. |........+.|+++.|.+.|.++.+ |+...+. .....+...|++++|.+.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 567888888777766543 2222 22223344677888888888877663 3332222 225567778888888888
Q ss_pred HHHHHhcCCCCC-CHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchH-------HHHHHHHHHHHhcCCHHHHHH
Q 048364 135 FREMISNEGLTP-DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE-------QIATILVDMYAKCGFLKYALM 206 (400)
Q Consensus 135 ~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~ 206 (400)
++++. ...| +...+..+...+.+.|+++. +..++..+.+.+..++. ..|..++.......+.+...+
T Consensus 176 l~~~~---~~~P~~~~al~ll~~~~~~~gdw~~--a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 176 VDKLL---EVAPRHPEVLRLAEQAYIRTGAWSS--LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHH---hcCCCCHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88876 2234 34566677777888888888 88888877776644322 244455555555666777788
Q ss_pred HHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCC
Q 048364 207 VFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDL 283 (400)
Q Consensus 207 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 283 (400)
+++.+.+ .++.....+...+...|+.++|.+++++..+. .|+... .++.+....++.+++.+..+...++ .
T Consensus 251 ~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~ 324 (398)
T PRK10747 251 WWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--H 324 (398)
T ss_pred HHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--C
Confidence 8887765 46778888999999999999999999998874 445432 2344445669999999999999864 3
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048364 284 EPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348 (400)
Q Consensus 284 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (400)
+.|...+..+.+.+.+.|++++|.+.|+.. ...|+...+..+...+.+.|+.++|.+++++....
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456677888999999999999999999999 77899999999999999999999999999998764
No 30
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=4.6e-14 Score=124.13 Aligned_cols=272 Identities=13% Similarity=0.029 Sum_probs=131.7
Q ss_pred HHHHHHHHhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHhhCCC--C----ChhhHHHHHHHHHhcCCcchHHHHHH
Q 048364 66 FGFARKLFDELPE--R-NAVTWNTMIKGYSKSGNVCEARDFFERMPL--R----NVASWSAMIAAYLNAGAYDPGLKLFR 136 (400)
Q Consensus 66 ~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 136 (400)
..+|...|+.+++ + +......+..+|...+++++|.++|+.+.. | +...|.+.+--+.+ +-++..+.
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~La 410 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLA 410 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHH
Confidence 3556666666443 1 223444555666666666666666666542 1 44555555543322 22222222
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCc
Q 048364 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNV 216 (400)
Q Consensus 137 ~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 216 (400)
+-+ -..-+-.+.+|.++-++|+-.++.+. |.+.|+.....+. -...+|+.+..-+.....+|.|...|+.....|+
T Consensus 411 q~L-i~~~~~sPesWca~GNcfSLQkdh~~--Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 411 QDL-IDTDPNSPESWCALGNCFSLQKDHDT--AIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHH-HhhCCCCcHHHHHhcchhhhhhHHHH--HHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 211 00111122334333333333333333 3333333322210 0233444444444555556666666666665555
Q ss_pred ccHHH---HHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC-ChhhHHH
Q 048364 217 ISWTA---LICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGC 292 (400)
Q Consensus 217 ~~~~~---l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 292 (400)
..||+ +.-.|.+.++++.|+-.|++..+-+. -+.+....+...+.+.|+.++|+++++++.. +.| |+..--.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~---ld~kn~l~~~~ 562 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIH---LDPKNPLCKYH 562 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHh---cCCCCchhHHH
Confidence 54444 33455666666666666665555421 1334444455555556666666666666552 222 2222233
Q ss_pred HHHHHHhcCChHHHHHHHHhc-cCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 293 MVDLFGKAGFLEEAYEVIRTM-RLEPN-VIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
.+..+...+++++|+..++++ .+.|+ ...|-.+.+.|.+.|+.+.|+.-|-.+.+.+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 444555566666666666666 44443 3345555556666666666666666666655
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.65 E-value=4.3e-12 Score=111.58 Aligned_cols=358 Identities=11% Similarity=0.065 Sum_probs=226.6
Q ss_pred HHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHcCCChHH
Q 048364 24 KSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE--R-NAVTWNTMIKGYSKSGNVCE 99 (400)
Q Consensus 24 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~ 99 (400)
..|.+.+.++-|..+|...++--+ .+..+|..+..+- ..|..+....+|++... | ....|-....-+...|++..
T Consensus 524 ~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ 602 (913)
T KOG0495|consen 524 QSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPA 602 (913)
T ss_pred HHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHH
Confidence 333334444444444444443211 1233344333333 44444444444444432 1 22333333444455566666
Q ss_pred HHHHHhhCC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHH
Q 048364 100 ARDFFERMP---LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFI 176 (400)
Q Consensus 100 a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~ 176 (400)
|..++...- ..+...|-+-+..-..+.++++|..+|.+.. +..|+...|.--++.-.-.+..++ |.++++..
T Consensus 603 ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar---~~sgTeRv~mKs~~~er~ld~~ee--A~rllEe~ 677 (913)
T KOG0495|consen 603 ARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKAR---SISGTERVWMKSANLERYLDNVEE--ALRLLEEA 677 (913)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHh---ccCCcchhhHHHhHHHHHhhhHHH--HHHHHHHH
Confidence 666665543 2244566666666666667777777776665 345555555544444455556666 66666555
Q ss_pred HhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CCc-ccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHH
Q 048364 177 VKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--RNV-ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253 (400)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 253 (400)
++.- +.-...|..+...+-+.++.+.|...|..-.+ |+. ..|-.+...--+.|++-.|..++++.+-.+.+ +...
T Consensus 678 lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~l 755 (913)
T KOG0495|consen 678 LKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALL 755 (913)
T ss_pred HHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchh
Confidence 5442 22344566666677777777777777666554 433 34555555556667777777777776665432 5666
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHHHhcC
Q 048364 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHK 333 (400)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~ 333 (400)
|...|+.-.+.|+.+.|..++.+... .++.+...|..-|....+.++-.+..+.+++. ..|....-.+...+....
T Consensus 756 wle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~ 831 (913)
T KOG0495|consen 756 WLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEK 831 (913)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHH
Confidence 77777777777777777777777764 44556666776676666666666666666654 346667777788888889
Q ss_pred CHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhccccccccCcccccc
Q 048364 334 QFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVISS 397 (400)
Q Consensus 334 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 397 (400)
++++|...|.+.+..+ | +...+|..+...+.+.|.-++-.+++++... -.|+.|..|..+
T Consensus 832 k~~kar~Wf~Ravk~d-~-d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~av 891 (913)
T KOG0495|consen 832 KIEKAREWFERAVKKD-P-DNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHHHHccC-C-ccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHH
Confidence 9999999999999999 8 8899999999999999999999999998876 568888888765
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=1.1e-12 Score=116.55 Aligned_cols=276 Identities=12% Similarity=0.084 Sum_probs=213.5
Q ss_pred cCCChHHHHHHHhhCCCC--Ch-hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHH--HHHHHhhcccchhhh
Q 048364 93 KSGNVCEARDFFERMPLR--NV-ASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIG--AVLSGCSHLGSVGLL 167 (400)
Q Consensus 93 ~~~~~~~a~~~~~~~~~~--~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~--~ll~~~~~~~~~~~~ 167 (400)
-.|+++.|.+.+...... ++ ..|.....+..+.|+++.|.+.+.++. ...|+..... .....+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~---~~~~~~~~~~~l~~a~l~l~~g~~~~- 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAA---ELADNDQLPVEITRVRIQLARNENHA- 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCcchHHHHHHHHHHHHHCCCHHH-
Confidence 379999999999876543 23 334344555689999999999999998 4467765443 33567889999999
Q ss_pred hhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCc-----------ccHHHHHHHHHhCCChhhHH
Q 048364 168 MGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNV-----------ISWTALICGSAHRGYSEDAL 236 (400)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~a~ 236 (400)
|...++.+.+.. +-++.+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+...
T Consensus 172 -Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 172 -ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred -HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999998877 44678888999999999999999999999886322 13333444444455566677
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cC
Q 048364 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RL 315 (400)
Q Consensus 237 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~ 315 (400)
++++.+.+. .+.+......+..++...|+.++|.+++++..+. +|+.... ++.+....++.+++.+..++. ..
T Consensus 250 ~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 250 RWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred HHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh
Confidence 777766443 3447778888999999999999999999998852 4454322 334445669999999999988 44
Q ss_pred Cc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 316 EP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 316 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
.| |...+..+...|.+.+++++|.+.|++..+.. | +...+..+..++.+.|+.++|.+++++-..
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~-P--~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR-P--DAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56 45567889999999999999999999999988 5 778889999999999999999999987754
No 33
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=4.3e-14 Score=124.30 Aligned_cols=279 Identities=15% Similarity=0.090 Sum_probs=216.2
Q ss_pred CCChHHHHHHHhhCCC--CCh-hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCC-CHHHHHHHHHHhhcccchhhhhh
Q 048364 94 SGNVCEARDFFERMPL--RNV-ASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP-DQMTIGAVLSGCSHLGSVGLLMG 169 (400)
Q Consensus 94 ~~~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~a 169 (400)
.=+..+|+..|...+. +|. .....+..+|...+++++|.++|+.+.+...... +..+|.+.+.-+-+.- +
T Consensus 332 ~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v------~ 405 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV------A 405 (638)
T ss_pred HHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH------H
Confidence 3456889999988552 233 4455678899999999999999999984333222 4567888877654322 2
Q ss_pred hhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCC---CcccHHHHHHHHHhCCChhhHHHHHHHHHHCC
Q 048364 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER---NVISWTALICGSAHRGYSEDALSLFEMMQATG 246 (400)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 246 (400)
...+..-.-..-+..+.+|.++.++|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+..
T Consensus 406 Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~- 484 (638)
T KOG1126|consen 406 LSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV- 484 (638)
T ss_pred HHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC-
Confidence 222222222223456889999999999999999999999999874 4568888888889999999999999987653
Q ss_pred CCCC-HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHH
Q 048364 247 VKPN-EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIW 322 (400)
Q Consensus 247 ~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~ 322 (400)
.|. -..|-.+...|.+.++++.|+-.|+++. .+.| +......++..+.+.|+.++|++++++. -..| |...-
T Consensus 485 -~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~ 560 (638)
T KOG1126|consen 485 -DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK 560 (638)
T ss_pred -CchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH
Confidence 222 2345567778999999999999999998 4455 5667778888999999999999999998 4444 44444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhccc
Q 048364 323 GSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 385 (400)
-.-+..+...+++++|...++++.+.- | .+..++..++..|.+.|+.+.|+.-|.-+.+..
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~v-P-~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELV-P-QESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhC-c-chHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 455677888899999999999999998 8 899999999999999999999998887776643
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=4.4e-12 Score=107.51 Aligned_cols=357 Identities=13% Similarity=0.142 Sum_probs=254.9
Q ss_pred cccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC--CCh-hhHHHHHHHHHcCCChHHHHH
Q 048364 27 THFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE--RNA-VTWNTMIKGYSKSGNVCEARD 102 (400)
Q Consensus 27 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~ 102 (400)
...+++..|..+|+.++... ..+...|...+.+- ++..+..|..+++.... |.+ ..|--.+..--..|++..|.+
T Consensus 84 esq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHH
Confidence 34567888888998887755 33666777777777 88888889888888764 322 234444444556788888888
Q ss_pred HHhhCC--CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhc-
Q 048364 103 FFERMP--LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN- 179 (400)
Q Consensus 103 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~- 179 (400)
+|++-. +|+..+|++.|..-.+-+.++.|..+|+..+ -+.|++.+|.-..+.--+.|.... +..++..+.+.
T Consensus 163 iferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV---~~HP~v~~wikyarFE~k~g~~~~--aR~VyerAie~~ 237 (677)
T KOG1915|consen 163 IFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFV---LVHPKVSNWIKYARFEEKHGNVAL--ARSVYERAIEFL 237 (677)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh---eecccHHHHHHHHHHHHhcCcHHH--HHHHHHHHHHHh
Confidence 888744 7888889888888888888889999998887 567888888888887778887777 77777766542
Q ss_pred c-ccchHHHHHHHHHHHHhcCCHHHHHHHHHhcc--------------------------------------------CC
Q 048364 180 E-WELNEQIATILVDMYAKCGFLKYALMVFELME--------------------------------------------ER 214 (400)
Q Consensus 180 ~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------------------------------------------~~ 214 (400)
| -..+...+.+....=.++..++.|.-+|+-.. +.
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 1 12233444444444444555555555443222 11
Q ss_pred ---CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHH-------HHHHHHHHH---HhcCChhhHHHHHHHhhhhc
Q 048364 215 ---NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEM-------TFTGVLTAC---VHTGLVDEGRKYFKMIDEEY 281 (400)
Q Consensus 215 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~ 281 (400)
|-.+|-..+..-...|+.+...++|++.... ++|-.. .|.-+=-+| ....+.+.+.++|+...+
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-- 394 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-- 394 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--
Confidence 3345666666667789999999999998876 555321 222222222 346788889999988884
Q ss_pred CCCCChhhHHHHHHHH----HhcCChHHHHHHHHhc-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCch
Q 048364 282 DLEPRIQHYGCMVDLF----GKAGFLEEAYEVIRTM-RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356 (400)
Q Consensus 282 ~~~~~~~~~~~l~~~~----~~~g~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 356 (400)
-++....||.-+--.| .++.++..|.+++-.. |.-|...+|...|..-.+.++++.+..++++.++.+ | .+..
T Consensus 395 lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-P-e~c~ 472 (677)
T KOG1915|consen 395 LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-P-ENCY 472 (677)
T ss_pred hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-h-HhhH
Confidence 4444556665544443 4778899999998877 888988999888888889999999999999999988 8 7888
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHhccccccccCccc
Q 048364 357 VFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSV 394 (400)
Q Consensus 357 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 394 (400)
++...+..-...|+++.|..+|+-.+++.....|..-|
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 88888888888899999999998888776655555443
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=1.1e-12 Score=110.64 Aligned_cols=203 Identities=13% Similarity=0.101 Sum_probs=161.6
Q ss_pred cccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHH
Q 048364 160 HLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDAL 236 (400)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 236 (400)
..|+++. |...+.+.+...-.-....|| +.-.+-..|++++|+..|-++.. .+......+.+.|....++.+|+
T Consensus 502 ~ngd~dk--a~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 502 ANGDLDK--AAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred ecCcHHH--HHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 3566677 777777777665444444444 33446678899999988877654 56667777888888899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cC
Q 048364 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RL 315 (400)
Q Consensus 237 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~ 315 (400)
+++-+.... ++.|+.....|...|-+.|+-.+|.+.+-.--+ -++.+..+..-|...|....-++++..+|++. -+
T Consensus 579 e~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaali 655 (840)
T KOG2003|consen 579 ELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI 655 (840)
T ss_pred HHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 998776554 555778888999999999999999887765542 44567888888888999999999999999998 67
Q ss_pred CccHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccc
Q 048364 316 EPNVIIWGSFLAACK-EHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEK 370 (400)
Q Consensus 316 ~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 370 (400)
.|+..-|..++..|. +.|++.+|..+++...++. | .+......|++.+...|-
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf-p-edldclkflvri~~dlgl 709 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF-P-EDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-c-cchHHHHHHHHHhccccc
Confidence 899999999887664 7899999999999999998 8 899999999999987764
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.63 E-value=2.4e-15 Score=127.73 Aligned_cols=252 Identities=13% Similarity=0.070 Sum_probs=64.9
Q ss_pred HHHHHhcccchhHHHHHHHHHHHHhCccc-chhhhhHHHHHH-HhCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHcCC
Q 048364 21 HILKSCTHFNNLTVIHHLHSHILKLGFIS-HVYVATSLLHEY-VVTSFGFARKLFDELPER---NAVTWNTMIKGYSKSG 95 (400)
Q Consensus 21 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~ 95 (400)
.+...+.+.|++++|+++++.......+| +...|..+.... ..++++.|...++++... +...+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 44666677788888888775544433223 333444444444 777777777777777653 23345555555 5677
Q ss_pred ChHHHHHHHhhCC--CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhh
Q 048364 96 NVCEARDFFERMP--LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH 173 (400)
Q Consensus 96 ~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~ 173 (400)
++++|.+++...- .++...+..++..+.+.++++++.++++.+......+++...|..+...+.+.|+.+. |...+
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~--A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDK--ALRDY 169 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHH--HHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH--HHHHH
Confidence 7777777766543 2345555666666777777777777777765333333444455555555555555555 55555
Q ss_pred hHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC
Q 048364 174 GFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250 (400)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 250 (400)
+...+.... +..+...++..+...|+.+++.++++...+ .|+..+..+..++...|+.++|+..|++..+.. +.|
T Consensus 170 ~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 170 RKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 555444321 334444455555555555554444433332 234444445555555555555555555544431 224
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHh
Q 048364 251 EMTFTGVLTACVHTGLVDEGRKYFKMI 277 (400)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~ 277 (400)
......+..++...|+.++|.++..++
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 444444555555555555555544443
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=4.5e-12 Score=107.08 Aligned_cols=313 Identities=12% Similarity=0.066 Sum_probs=217.2
Q ss_pred HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChHHHHHHHhhCCCCChh-hHHHHHHHHHhcCCcchHHHHHHHHHh
Q 048364 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVA-SWSAMIAAYLNAGAYDPGLKLFREMIS 140 (400)
Q Consensus 62 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~ 140 (400)
+.|..+.|+..|......-+..|.+-+....-..+.+.+..+.......+.. .=--+..++....+.++++.=.+...
T Consensus 176 ~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~- 254 (559)
T KOG1155|consen 176 ELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLS- 254 (559)
T ss_pred hhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 5555555666555555433334444333333333333333322222211111 11123345555566777777776666
Q ss_pred cCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhcccc--chHHHHHHHHHHHHhcCCHHH-HHHHHHhccCCCcc
Q 048364 141 NEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE--LNEQIATILVDMYAKCGFLKY-ALMVFELMEERNVI 217 (400)
Q Consensus 141 ~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~ 217 (400)
..|++-+...-+....+.-...++++ |...|+.+.+...- -|..+|..++-.-....++.- |..++ .+.+--+.
T Consensus 255 ~~gf~~~~~i~~~~A~~~y~~rDfD~--a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~-~idKyR~E 331 (559)
T KOG1155|consen 255 SVGFPNSMYIKTQIAAASYNQRDFDQ--AESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-NIDKYRPE 331 (559)
T ss_pred hccCCccHHHHHHHHHHHhhhhhHHH--HHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH-HhccCCcc
Confidence 55655555555555555667778888 88888888887421 255666665533222222222 22222 23333566
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHH
Q 048364 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297 (400)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (400)
|+.++.+-|.-.++.++|...|++..+.+.. ....|+.+.+-|....+...|.+-++.+.+ -.+.|-..|-.|.++|
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAY 408 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHH
Confidence 7777888889999999999999999887432 456788888899999999999999999994 3344788999999999
Q ss_pred HhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHH
Q 048364 298 GKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAE 375 (400)
Q Consensus 298 ~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 375 (400)
.-.+.+.-|+-.|++. .++| |...|.+|..+|.+.++.++|++.|.++...+ . .+...+..|+..|.+.++.++|.
T Consensus 409 eim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d-te~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D-TEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred HHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c-cchHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999 6677 77899999999999999999999999999998 5 57899999999999999999999
Q ss_pred HHHHHHhc
Q 048364 376 RVRKLMLN 383 (400)
Q Consensus 376 ~~~~~m~~ 383 (400)
..+++.++
T Consensus 487 ~~yek~v~ 494 (559)
T KOG1155|consen 487 QYYEKYVE 494 (559)
T ss_pred HHHHHHHH
Confidence 99988775
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.62 E-value=2.8e-12 Score=114.65 Aligned_cols=279 Identities=11% Similarity=0.009 Sum_probs=167.8
Q ss_pred HhCCHHHHHHHHhhCCC--CCh-hhHHHHHHHHHcCCChHHHHHHHhhCC--CCCh--hhHHHHHHHHHhcCCcchHHHH
Q 048364 62 VVTSFGFARKLFDELPE--RNA-VTWNTMIKGYSKSGNVCEARDFFERMP--LRNV--ASWSAMIAAYLNAGAYDPGLKL 134 (400)
Q Consensus 62 ~~g~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~--~~~~~l~~~~~~~g~~~~a~~~ 134 (400)
..|+++.|.+.+.+..+ |+. ..+-....+..+.|+.+.|.+.|++.. .|+. .........+...|+++.|.+.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 77888888888877664 222 223344456677788888888888753 2332 2333456777788888888888
Q ss_pred HHHHHhcCCCCC-CHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHH---Hh----cCCHHHHHH
Q 048364 135 FREMISNEGLTP-DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY---AK----CGFLKYALM 206 (400)
Q Consensus 135 ~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~A~~ 206 (400)
++.+.+. .| +...+..+...+...|+++. +...+..+.+.+..+.......-..++ .. ....+...+
T Consensus 176 l~~l~~~---~P~~~~~l~ll~~~~~~~~d~~~--a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 176 VDKLLEM---APRHKEVLKLAEEAYIRSGAWQA--LDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHHhhHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 8888722 34 44566777777888888888 777787777776443322211111111 11 222233344
Q ss_pred HHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHH--H-HHHHHHHHhcCChhhHHHHHHHhhhh
Q 048364 207 VFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT--F-TGVLTACVHTGLVDEGRKYFKMIDEE 280 (400)
Q Consensus 207 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (400)
.++...+ .++..+..++..+...|+.++|.+++++..+.. ||... + ..........++.+.+.+.++...+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 4444433 255666677777777777777777777777652 33321 1 11111123345666667777666643
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHHh--c-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048364 281 YDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT--M-RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALR 347 (400)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~--~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (400)
..-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++...
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22222114455667777777777777777773 2 5567776677777777777777777777776544
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=1.6e-12 Score=116.13 Aligned_cols=287 Identities=13% Similarity=0.013 Sum_probs=203.2
Q ss_pred HHHHHHHhc--ccchhHHHHHHHHHHHHhCcccchhhh-hHHHHHH-HhCCHHHHHHHHhhCCC--CCh--hhHHHHHHH
Q 048364 19 ILHILKSCT--HFNNLTVIHHLHSHILKLGFISHVYVA-TSLLHEY-VVTSFGFARKLFDELPE--RNA--VTWNTMIKG 90 (400)
Q Consensus 19 ~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~-~~g~~~~a~~~~~~~~~--~~~--~~~~~l~~~ 90 (400)
...+.++.. ..|+++.|.+.+....+.. |+...+ -....+. ..|+.+.|.+.+++..+ |+. ...-.....
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 334444443 4789999999998877754 443333 3334445 88999999999998753 443 233445788
Q ss_pred HHcCCChHHHHHHHhhCC--CC-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHh---hcccch
Q 048364 91 YSKSGNVCEARDFFERMP--LR-NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGC---SHLGSV 164 (400)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~---~~~~~~ 164 (400)
+...|+++.|.+.++.+. .| +...+..+...+.+.|++++|.+++..+. +.++.++.........++ ...+..
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~-k~~~~~~~~~~~l~~~a~~~~l~~~~~ 241 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMA-KAGLFDDEEFADLEQKAEIGLLDEAMA 241 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999987 23 67788899999999999999999999998 554433322211111221 222222
Q ss_pred hhhhhhhhhhHHHhccc---cchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CCccc---HHHHHHHHHhCCChhhHH
Q 048364 165 GLLMGKSAHGFIVKNEW---ELNEQIATILVDMYAKCGFLKYALMVFELMEE--RNVIS---WTALICGSAHRGYSEDAL 236 (400)
Q Consensus 165 ~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~---~~~l~~~~~~~~~~~~a~ 236 (400)
+. +...+..+.+... ..++..+..+...+...|+.++|.+++++..+ ||... ...........++.+.+.
T Consensus 242 ~~--~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 242 DE--GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLE 319 (409)
T ss_pred hc--CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHH
Confidence 22 3334444444332 13778888999999999999999999999886 44332 122223334457788899
Q ss_pred HHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc
Q 048364 237 SLFEMMQATGVKPNE---MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 237 ~~~~~m~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
+.+++..+. .|+. ....++...+.+.|++++|.+.|+... .....|+...+..+...+.+.|+.++|.+++++.
T Consensus 320 ~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~-a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 320 KLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVA-ACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH-HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 988887765 3433 456688899999999999999999543 2245788888999999999999999999999975
No 40
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.61 E-value=5.3e-12 Score=114.95 Aligned_cols=354 Identities=14% Similarity=0.105 Sum_probs=259.6
Q ss_pred HHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCC---CCChhhHHHHHHHHHcCCChHH
Q 048364 24 KSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELP---ERNAVTWNTMIKGYSKSGNVCE 99 (400)
Q Consensus 24 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 99 (400)
..+.-.|+.++|.+++.++++..+. +...|-.|...| ..|+.+++...+-..- ..|...|-.+.....+.|++++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 3334459999999999999997644 566788899999 9999999998765443 4477889999999999999999
Q ss_pred HHHHHhhCCCC---ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCC-CH-----HHHHHHHHHhhcccchhhhhhh
Q 048364 100 ARDFFERMPLR---NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP-DQ-----MTIGAVLSGCSHLGSVGLLMGK 170 (400)
Q Consensus 100 a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~-----~~~~~ll~~~~~~~~~~~~~a~ 170 (400)
|.-.|.+..+. +...+---+..|.+.|+...|.+.|.++. ...| .. ...-.+++.+...++-+. |.
T Consensus 226 A~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~---~~~p~~d~er~~d~i~~~~~~~~~~~~~e~--a~ 300 (895)
T KOG2076|consen 226 ARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLL---QLDPPVDIERIEDLIRRVAHYFITHNERER--AA 300 (895)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHH---hhCCchhHHHHHHHHHHHHHHHHHhhHHHH--HH
Confidence 99999998743 43444445678999999999999999998 2233 21 233344566777777766 66
Q ss_pred hhhhHHHh-ccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC----C----------------------CcccHH---
Q 048364 171 SAHGFIVK-NEWELNEQIATILVDMYAKCGFLKYALMVFELMEE----R----------------------NVISWT--- 220 (400)
Q Consensus 171 ~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~----------------------~~~~~~--- 220 (400)
+.++.... .+-..+...++.++..|.+...++.|......... + +...|.
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 66555544 33445666788899999999999999887765542 1 111111
Q ss_pred -HHHHHHHhCCChhhHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHH
Q 048364 221 -ALICGSAHRGYSEDALSLFEMMQATGVKP--NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297 (400)
Q Consensus 221 -~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (400)
.++-++...+..+....+...+....+.| +...|.-+..++.+.|++.+|..+|..+... ...-+...|-.+.++|
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-EGYQNAFVWYKLARCY 459 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-ccccchhhhHHHHHHH
Confidence 22334445555555555566666665433 4567889999999999999999999999853 3333567899999999
Q ss_pred HhcCChHHHHHHHHhc-cCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------CCCCchHHHHHHHHhhcc
Q 048364 298 GKAGFLEEAYEVIRTM-RLEPN-VIIWGSFLAACKEHKQFDMAERVIKQALRMVK-------PENDGGVFTLICDLYTMN 368 (400)
Q Consensus 298 ~~~g~~~~a~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~ 368 (400)
...|.++.|.+.|... ...|+ ...--.|...+.+.|+.++|.+.++.+..-+. ..++..........+...
T Consensus 460 ~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 9999999999999998 66664 44556677889999999999999998653220 225566667777888899
Q ss_pred cchHHHHHHHHHHhcc
Q 048364 369 EKWEGAERVRKLMLNQ 384 (400)
Q Consensus 369 g~~~~a~~~~~~m~~~ 384 (400)
|+.++-..+...|++.
T Consensus 540 gk~E~fi~t~~~Lv~~ 555 (895)
T KOG2076|consen 540 GKREEFINTASTLVDD 555 (895)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9998877776666543
No 41
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=4.5e-11 Score=100.26 Aligned_cols=360 Identities=13% Similarity=0.127 Sum_probs=244.0
Q ss_pred CCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHHH
Q 048364 13 PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGY 91 (400)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 91 (400)
+-+..||..+|.++++-...+.|.+++++......+.+..++|.+|.+- -.-+-+..-++...-..||..|+|+++.+.
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~ 283 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLSCA 283 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHHHH
Confidence 5578899999999999999999999999988877788889999999887 333333333333333468999999999999
Q ss_pred HcCCChHHHHH----HHhhCC----CCChhhHHHHHHHHHhcCCcch-HHHHHHHHHh---cCCCCC----CHHHHHHHH
Q 048364 92 SKSGNVCEARD----FFERMP----LRNVASWSAMIAAYLNAGAYDP-GLKLFREMIS---NEGLTP----DQMTIGAVL 155 (400)
Q Consensus 92 ~~~~~~~~a~~----~~~~~~----~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~---~~~~~p----~~~~~~~ll 155 (400)
.+.|+++.|.+ ++.+|+ +|...+|..+|..+.+.++..+ |..++.++.. ...++| |..-|..-+
T Consensus 284 akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM 363 (625)
T KOG4422|consen 284 AKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAM 363 (625)
T ss_pred HHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHH
Confidence 99998876654 445554 7888999999999988887754 5555555542 112233 344577788
Q ss_pred HHhhcccchhhhhhhhhhhHHHhcc----ccch---HHHHHHHHHHHHhcCCHHHHHHHHHhccC----CCcccHHHHHH
Q 048364 156 SGCSHLGSVGLLMGKSAHGFIVKNE----WELN---EQIATILVDMYAKCGFLKYALMVFELMEE----RNVISWTALIC 224 (400)
Q Consensus 156 ~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~ 224 (400)
..|.+..+.+. |..+........ +.|+ ..-|..+..+.|.....+.-...|+.|.- |+..+...+++
T Consensus 364 ~Ic~~l~d~~L--A~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 364 SICSSLRDLEL--AYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHhhhHHH--HHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 88888888887 888777665432 1222 23345666777788888888888888874 67777778888
Q ss_pred HHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-Ch--------hh-----HHHH-------HHHhhhhcCC
Q 048364 225 GSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG-LV--------DE-----GRKY-------FKMIDEEYDL 283 (400)
Q Consensus 225 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~--------~~-----a~~~-------~~~~~~~~~~ 283 (400)
+..-.|.++-.-+++.+++..|-..+...-.-++..+++.. .. .. |..+ -.++. ..
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r---~~ 518 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR---AQ 518 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH---hc
Confidence 88888999888888888888764444333333333333322 11 00 1111 12222 22
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHhc-------cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCch
Q 048364 284 EPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-------RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356 (400)
Q Consensus 284 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 356 (400)
..+....+.+.-.+.+.|..++|.++|..+ ...|.......++....+.++...|...++-|...+.| .-..
T Consensus 519 ~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~-~~E~ 597 (625)
T KOG4422|consen 519 DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP-ICEG 597 (625)
T ss_pred cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch-hhhH
Confidence 334556777778899999999999999877 23344444556677778889999999999999888744 2222
Q ss_pred HHHHHHHHhhcccchHHHHHHH
Q 048364 357 VFTLICDLYTMNEKWEGAERVR 378 (400)
Q Consensus 357 ~~~~l~~~~~~~g~~~~a~~~~ 378 (400)
.-..+...|.-+....+++.=+
T Consensus 598 La~RI~e~f~iNqeq~~~ls~l 619 (625)
T KOG4422|consen 598 LAQRIMEDFAINQEQKEALSNL 619 (625)
T ss_pred HHHHHHHhcCcCHHHHHHHhhh
Confidence 4445555555444444444433
No 42
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.60 E-value=1.8e-12 Score=118.81 Aligned_cols=365 Identities=12% Similarity=0.091 Sum_probs=225.1
Q ss_pred chhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC--C-ChhhHHHHHHHH
Q 048364 16 SFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE--R-NAVTWNTMIKGY 91 (400)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~ 91 (400)
..+|-.+.+++-..|++++|..+|.+..+.....-+..+--+...+ +.|+++.+...|+.+.. | +..+.-.+...|
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Ly 386 (1018)
T KOG2002|consen 307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLY 386 (1018)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHH
Confidence 4568889999999999999999998877754332233445567777 99999999999999874 3 445566666666
Q ss_pred HcCC----ChHHHHHHHhhCCCC---ChhhHHHHHHHHHhcCCcchHHHHHHHHH---hcCCCCCCHHHHHHHHHHhhcc
Q 048364 92 SKSG----NVCEARDFFERMPLR---NVASWSAMIAAYLNAGAYDPGLKLFREMI---SNEGLTPDQMTIGAVLSGCSHL 161 (400)
Q Consensus 92 ~~~~----~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~---~~~~~~p~~~~~~~ll~~~~~~ 161 (400)
+..+ ..+.|..++.....+ |..+|-.+...+.+..-+ .++.+|.... ...+-.+.....|.+...+...
T Consensus 387 a~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~ 465 (1018)
T KOG2002|consen 387 AHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRL 465 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHh
Confidence 6654 456677776665533 555666666655554333 3355554332 1233345566777777777777
Q ss_pred cchhhhhhhhhhhHHHhc---ccc------chHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCc---ccHHHHHHHHHhC
Q 048364 162 GSVGLLMGKSAHGFIVKN---EWE------LNEQIATILVDMYAKCGFLKYALMVFELMEERNV---ISWTALICGSAHR 229 (400)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~---~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~ 229 (400)
|.++. |...+...... ... ++..+-..+..++-..++++.|.+.|..+.+..+ ..|-.++......
T Consensus 466 g~~~~--A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k 543 (1018)
T KOG2002|consen 466 GNIEK--ALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDK 543 (1018)
T ss_pred cChHH--HHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhc
Confidence 77777 77777666554 111 2222334455666666777777777777765222 2333333333344
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHh----------
Q 048364 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK---------- 299 (400)
Q Consensus 230 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------- 299 (400)
+...+|...+.+..... ..++..+..+...+.+...+..|.+-|+.+.++....+|+.+.-+|...|..
T Consensus 544 ~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~e 622 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPE 622 (1018)
T ss_pred cCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChH
Confidence 56666777776665542 2233344445555666666666666666555543334555555555554432
Q ss_pred --cCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHH
Q 048364 300 --AGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAE 375 (400)
Q Consensus 300 --~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 375 (400)
.+..++|+++|.+. ...| |.+.-|-+.-+++..|++.+|..+|.++.+.. . ....+|..++++|...|+|-.|+
T Consensus 623 k~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~-~~~dv~lNlah~~~e~~qy~~AI 700 (1018)
T KOG2002|consen 623 KEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-S-DFEDVWLNLAHCYVEQGQYRLAI 700 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-h-hCCceeeeHHHHHHHHHHHHHHH
Confidence 23566777777766 4444 55666666667777777777777777777766 3 45667777777777777777777
Q ss_pred HHHHHHhcccc
Q 048364 376 RVRKLMLNQNV 386 (400)
Q Consensus 376 ~~~~~m~~~~~ 386 (400)
+.|+...+...
T Consensus 701 qmYe~~lkkf~ 711 (1018)
T KOG2002|consen 701 QMYENCLKKFY 711 (1018)
T ss_pred HHHHHHHHHhc
Confidence 77776655433
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=7e-12 Score=106.66 Aligned_cols=353 Identities=11% Similarity=0.035 Sum_probs=241.7
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHHHhCcccc-hhhhhHHHHHH-HhCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHc
Q 048364 19 ILHILKSCTHFNNLTVIHHLHSHILKLGFISH-VYVATSLLHEY-VVTSFGFARKLFDELPERNA---VTWNTMIKGYSK 93 (400)
Q Consensus 19 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~ 93 (400)
+....+-|-+.|.+++|.++|.+.++ ..|+ +..|.....+| ..|+++++.+.-.+..+-++ ..+..-..++-.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 34445567788999999999999998 4567 66778888888 99999999988777765333 233444445555
Q ss_pred CCChHHHHHH----------------------HhhC---------C---C---CChh-----------------------
Q 048364 94 SGNVCEARDF----------------------FERM---------P---L---RNVA----------------------- 113 (400)
Q Consensus 94 ~~~~~~a~~~----------------------~~~~---------~---~---~~~~----------------------- 113 (400)
.|++++|+.- ++.. . . |+..
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 5555555432 1110 1 1 1111
Q ss_pred hHHHHHHHHHh--cC---CcchHHHHHHHHHhcCCCCCCHH-----------HHHHHHHHhhcccchhhhhhhhhhhHHH
Q 048364 114 SWSAMIAAYLN--AG---AYDPGLKLFREMISNEGLTPDQM-----------TIGAVLSGCSHLGSVGLLMGKSAHGFIV 177 (400)
Q Consensus 114 ~~~~l~~~~~~--~g---~~~~a~~~~~~m~~~~~~~p~~~-----------~~~~ll~~~~~~~~~~~~~a~~~~~~~~ 177 (400)
++..+..++.. .+ .+..|.+.+.+-.......++.. +....-..+.-.|+.-. +..-++...
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~--a~~d~~~~I 353 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLG--AQEDFDAAI 353 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchh--hhhhHHHHH
Confidence 11111111111 11 23344443333221111122221 11111112334556666 777777777
Q ss_pred hccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHH
Q 048364 178 KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTF 254 (400)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 254 (400)
+....++. .|--+..+|....+.++..+.|++..+ .|+.+|..-.+.+.-.+++++|..=|++..... +-+...|
T Consensus 354 ~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~ 431 (606)
T KOG0547|consen 354 KLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAY 431 (606)
T ss_pred hcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHH
Confidence 77654433 266677789999999999999998876 467788888888888999999999999988763 2245667
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc---------HHHHHH
Q 048364 255 TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN---------VIIWGS 324 (400)
Q Consensus 255 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~---------~~~~~~ 324 (400)
..+.-+.-+.+++++++..|++.++ .++..+.+|+.....+..++++++|.+.|+.. .+.|+ ..+-..
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka 509 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKA 509 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhh
Confidence 7777777789999999999999997 56667889999999999999999999999987 55554 112222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 325 FLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 325 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
++..-.+ +++..|..+++++++.+ | ....+|..|...-...|+.++|+++|++..
T Consensus 510 ~l~~qwk-~d~~~a~~Ll~KA~e~D-p-kce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 510 LLVLQWK-EDINQAENLLRKAIELD-P-KCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred Hhhhchh-hhHHHHHHHHHHHHccC-c-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2322233 89999999999999999 8 788999999999999999999999999765
No 44
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=2.3e-12 Score=103.91 Aligned_cols=291 Identities=14% Similarity=0.107 Sum_probs=184.8
Q ss_pred HHHHHHhCCHHHHHHHHhhCCCCChhhH---HHHHHHHHcCCChHHHHHHHhhCC-CCCh------hhHHHHHHHHHhcC
Q 048364 57 LLHEYVVTSFGFARKLFDELPERNAVTW---NTMIKGYSKSGNVCEARDFFERMP-LRNV------ASWSAMIAAYLNAG 126 (400)
Q Consensus 57 l~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~-~~~~------~~~~~l~~~~~~~g 126 (400)
-++.+-+++.++|..+|-+|.+-|+.++ -+|.+.|-+.|..|.|+++-+.+. .||. .+...|..-|...|
T Consensus 42 GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 42 GLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred HHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhh
Confidence 3333355566666666666665444333 345556666666666666666544 3322 12334455566666
Q ss_pred CcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHH
Q 048364 127 AYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206 (400)
Q Consensus 127 ~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 206 (400)
-+|.|.++|..+. +.+ +.-.....-|+..|-...+|++|.+
T Consensus 122 l~DRAE~~f~~L~--------------------------------------de~-efa~~AlqqLl~IYQ~treW~KAId 162 (389)
T COG2956 122 LLDRAEDIFNQLV--------------------------------------DEG-EFAEGALQQLLNIYQATREWEKAID 162 (389)
T ss_pred hhhHHHHHHHHHh--------------------------------------cch-hhhHHHHHHHHHHHHHhhHHHHHHH
Confidence 6666666666665 221 1112233446677777777777777
Q ss_pred HHHhccCCCcc--------cHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhh
Q 048364 207 VFELMEERNVI--------SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMID 278 (400)
Q Consensus 207 ~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (400)
+-+++.+.+.. .|.-+...+....+.+.|..++.+..+.+.+ ....--.+.+.....|+++.|.+.++.+.
T Consensus 163 ~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 163 VAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred HHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHH
Confidence 77666553322 3444555555677888888888888776322 22233345567788889999999888888
Q ss_pred hhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchH
Q 048364 279 EEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357 (400)
Q Consensus 279 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 357 (400)
++ +..--+.+...|..+|...|+.++...++.++ ...+....-..+...-....-.+.|...+.+-+... |+...
T Consensus 242 eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~---Pt~~g 317 (389)
T COG2956 242 EQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRK---PTMRG 317 (389)
T ss_pred Hh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhC---CcHHH
Confidence 54 44444567778888899999999988888887 444555555555555555666777888887777776 48888
Q ss_pred HHHHHHHhh---cccchHHHHHHHHHHhccccccccC
Q 048364 358 FTLICDLYT---MNEKWEGAERVRKLMLNQNVRKARG 391 (400)
Q Consensus 358 ~~~l~~~~~---~~g~~~~a~~~~~~m~~~~~~~~~~ 391 (400)
+..++..-. ..|.+.+....++.|+...++..|.
T Consensus 318 f~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 318 FHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred HHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 888887765 3456777888888888776666554
No 45
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.56 E-value=2.8e-11 Score=100.63 Aligned_cols=277 Identities=15% Similarity=0.073 Sum_probs=199.6
Q ss_pred HhCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHcCCChHHHHHHHhhCCCC----ChhhHHHHHHHHHhcCCcchHHHH
Q 048364 62 VVTSFGFARKLFDELPER---NAVTWNTMIKGYSKSGNVCEARDFFERMPLR----NVASWSAMIAAYLNAGAYDPGLKL 134 (400)
Q Consensus 62 ~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~ 134 (400)
-.|++..|++...+..+. ....|..-..+.-+.|+.+.+-..+.+..++ +...+-+..+.....|+++.|..-
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 567777777777665432 2233444445566677777777777776543 233455556667777777777777
Q ss_pred HHHHHhcCCCCC-CHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchH-------HHHHHHHHHHHhcCCHHHHHH
Q 048364 135 FREMISNEGLTP-DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE-------QIATILVDMYAKCGFLKYALM 206 (400)
Q Consensus 135 ~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~ 206 (400)
.+++. ...| .........++|.+.|++.. ...+...+.+.+.-.+. .++..+++-....+..+.-..
T Consensus 176 v~~ll---~~~pr~~~vlrLa~r~y~~~g~~~~--ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~ 250 (400)
T COG3071 176 VDQLL---EMTPRHPEVLRLALRAYIRLGAWQA--LLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT 250 (400)
T ss_pred HHHHH---HhCcCChHHHHHHHHHHHHhccHHH--HHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 77776 2223 34556667777777777777 77777777776654332 355666666666666666666
Q ss_pred HHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCC
Q 048364 207 VFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDL 283 (400)
Q Consensus 207 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 283 (400)
.++..+. .++..-.+++.-+...|+.++|.++..+..+.+..|+ ....-.+.+.++.+.-++..++..+.++.
T Consensus 251 ~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~ 326 (400)
T COG3071 251 WWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE 326 (400)
T ss_pred HHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC
Confidence 7777764 4677777888889999999999999999988877766 22233466778888888888888765544
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 284 EPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 284 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
.| ..+..|...|.+.+.+.+|.+.|+.. ...|+..+|+.+..++.+.|+..+|.+..++....-
T Consensus 327 ~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 327 DP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred Ch--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 44 67888999999999999999999977 788999999999999999999999999999888655
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.2e-10 Score=98.62 Aligned_cols=359 Identities=14% Similarity=0.097 Sum_probs=243.6
Q ss_pred CCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhH-HHHHHH
Q 048364 13 PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTW-NTMIKG 90 (400)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~-~~l~~~ 90 (400)
.-|...+-.-.-.+...|....|.+.|...... -+..|.+-+... ..-+.+.+..+-...+..+...- --+..+
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKA 236 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHH
Confidence 334444444444445667777777777665432 234555555555 44555555544444443221111 123345
Q ss_pred HHcCCChHHHHHHHhhCCC---C-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCC-CHHHHHHHHHHhhcccchh
Q 048364 91 YSKSGNVCEARDFFERMPL---R-NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP-DQMTIGAVLSGCSHLGSVG 165 (400)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~---~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~ 165 (400)
+....+.+++..-.+.... | +...-+....+.-...++++|+.+|+++.+...-+. |..+|+.++-+-....++.
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 5556677777666555442 2 222223333445567799999999999984432222 4567777664433222221
Q ss_pred hhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCC---cccHHHHHHHHHhCCChhhHHHHHHHH
Q 048364 166 LLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERN---VISWTALICGSAHRGYSEDALSLFEMM 242 (400)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m 242 (400)
++..-.-.--..-+.|+..+.+-|+-.++.++|...|++..+-| ...|+.+..-|...++...|+.-|+..
T Consensus 317 ------~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 317 ------YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred ------HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 11111111112345677888899999999999999999998743 467889999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--cCCccHH
Q 048364 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--RLEPNVI 320 (400)
Q Consensus 243 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~p~~~ 320 (400)
.+-. +-|-..|-.|.++|.-.+...=|.-+|++..+ -.+.|...|.+|.++|.+.++.++|.+.|... .-..+..
T Consensus 391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 8863 44778999999999999999999999999983 23447899999999999999999999999998 2234668
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-CCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 321 IWGSFLAACKEHKQFDMAERVIKQALRMV----KPE-NDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 321 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
.+..+.+.|-+.++.++|...+++.++.. ... ....+...|...+.+.+++++|..+.......
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 89999999999999999999998877622 110 23445555777788999999998876665544
No 47
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.53 E-value=2.4e-11 Score=102.62 Aligned_cols=254 Identities=12% Similarity=0.092 Sum_probs=174.0
Q ss_pred HHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhc-ccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcC
Q 048364 121 AYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSH-LGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG 199 (400)
Q Consensus 121 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 199 (400)
-+.+.|+++.|+++++-+.++..-..+...-+...--+.+ -.++.. |..+-+..+... .-++...+.-.......|
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~--aqqyad~aln~d-ryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFAD--AQQYADIALNID-RYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhH--HHHHHHHHhccc-ccCHHHhhcCCceeeecC
Confidence 4677888888888888776322211121111111111221 223333 444444333322 112222222233344579
Q ss_pred CHHHHHHHHHhccCCCcccHHHHH---HHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 048364 200 FLKYALMVFELMEERNVISWTALI---CGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKM 276 (400)
Q Consensus 200 ~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 276 (400)
++++|.+.|++....|...-.+|. -.+-..|+.++|++.|-++..- +.-+......+...|....+..+|++++.+
T Consensus 505 d~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 999999999999887665444433 3567789999999999877543 233667777888889999999999999988
Q ss_pred hhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC
Q 048364 277 IDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354 (400)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 354 (400)
... -++.|+...+.|...|-+.|+-..|.+..-+- +.-| +..+..-|..-|....-+++++.+|+++--.. | +
T Consensus 584 ~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq-p--~ 658 (840)
T KOG2003|consen 584 ANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ-P--N 658 (840)
T ss_pred hcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-c--c
Confidence 863 55668889999999999999999999887665 4444 67777778888888888999999999987766 5 5
Q ss_pred chHHHHH-HHHhhcccchHHHHHHHHHHhc
Q 048364 355 GGVFTLI-CDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 355 ~~~~~~l-~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
..-|..+ ..++.+.|++.+|.++++....
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 5555544 4566789999999999988764
No 48
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.52 E-value=7.9e-12 Score=103.43 Aligned_cols=199 Identities=14% Similarity=0.036 Sum_probs=165.5
Q ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 048364 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL 258 (400)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 258 (400)
......+..+...|...|++++|...+++..+ | +...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 33466778889999999999999999998765 3 35567788889999999999999999998764 33556778888
Q ss_pred HHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHH
Q 048364 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFD 336 (400)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 336 (400)
..+...|++++|.+.++..............+..+..++...|++++|.+.+++. ...| +...+..+...+...|+++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 8999999999999999999853222334556777888999999999999999988 4444 4567888899999999999
Q ss_pred HHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 337 MAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 337 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
+|...+++..+.. | .++..+..++..+...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQTY-N-QTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999986 6 6788888889999999999999998887754
No 49
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=6.8e-10 Score=94.52 Aligned_cols=363 Identities=11% Similarity=0.099 Sum_probs=235.6
Q ss_pred CchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCC--CCChhhHHHHHHHH
Q 048364 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELP--ERNAVTWNTMIKGY 91 (400)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~ 91 (400)
+...|..-+..=.+...+..|..+++.++..-+..|..-| ..+.+- ..|++..|.++|+... +|+...|++.|+.-
T Consensus 106 ~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fE 184 (677)
T KOG1915|consen 106 NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFE 184 (677)
T ss_pred cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 4444555555556666777777777776665433333322 233333 6677777777777665 47777777777777
Q ss_pred HcCCChHHHHHHHhhCC--CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCC-CHHHHHHHHHHhhcccchhhhh
Q 048364 92 SKSGNVCEARDFFERMP--LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP-DQMTIGAVLSGCSHLGSVGLLM 168 (400)
Q Consensus 92 ~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~ 168 (400)
.+.+.++.|..+|++.. .|++.+|--....-.+.|+...|..+|+.....-|-.- +...+.+...--.+...++.
T Consensus 185 lRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ER-- 262 (677)
T KOG1915|consen 185 LRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYER-- 262 (677)
T ss_pred HHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 77777777777777643 56666666666666666666666666665542111100 01112222211122222222
Q ss_pred hhhhhhHHHhc-------------------------------------------cccchHHHHHHHHHHHHhcCCHHHHH
Q 048364 169 GKSAHGFIVKN-------------------------------------------EWELNEQIATILVDMYAKCGFLKYAL 205 (400)
Q Consensus 169 a~~~~~~~~~~-------------------------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~ 205 (400)
|..++...++. .-+.|-.+|--.+..-...|+.+...
T Consensus 263 ar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ir 342 (677)
T KOG1915|consen 263 ARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIR 342 (677)
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHH
Confidence 22222222110 11224445555666666789999999
Q ss_pred HHHHhccC--CCc---ccHHHHH--------HHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCChh
Q 048364 206 MVFELMEE--RNV---ISWTALI--------CGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC----VHTGLVD 268 (400)
Q Consensus 206 ~~~~~~~~--~~~---~~~~~l~--------~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~----~~~~~~~ 268 (400)
++|++... |.. ..|...| -.-....+.+.+.++|+..++. ++....||..+=-.| .++.++.
T Consensus 343 e~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~ 421 (677)
T KOG1915|consen 343 ETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLT 421 (677)
T ss_pred HHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccH
Confidence 99998875 221 1222211 1123578899999999999884 444557776554443 4678999
Q ss_pred hHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048364 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQAL 346 (400)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 346 (400)
.|.+++.... |.-|...+|...|..=.+.++++.+..++++. ...| |-.+|......-...|+.+.|..+|+-++
T Consensus 422 ~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi 498 (677)
T KOG1915|consen 422 GARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAI 498 (677)
T ss_pred HHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 9999999988 88899999999999999999999999999998 6667 66788888888889999999999999998
Q ss_pred HcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 347 RMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 347 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
+..........+...+..-...|.++.|..+++++.+.
T Consensus 499 ~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 499 SQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred cCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 87632122334555555556889999999999999864
No 50
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.51 E-value=1.1e-11 Score=112.57 Aligned_cols=246 Identities=12% Similarity=0.083 Sum_probs=162.3
Q ss_pred HhhHHHHhCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCC
Q 048364 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERN 80 (400)
Q Consensus 2 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~ 80 (400)
+++-.|+..|+.|+..||..+|..|+..|+.+.|- +|.-|.-.....+...++.++... ..++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46788999999999999999999999999999999 999998877777888899999888 888877665 788
Q ss_pred hhhHHHHHHHHHcCCChHH---HHHHHhhCC---------CC-------------ChhhHHHHHHHHHhcCCcchHHHHH
Q 048364 81 AVTWNTMIKGYSKSGNVCE---ARDFFERMP---------LR-------------NVASWSAMIAAYLNAGAYDPGLKLF 135 (400)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~---a~~~~~~~~---------~~-------------~~~~~~~l~~~~~~~g~~~~a~~~~ 135 (400)
..+|..+..+|.+.||+.. +.+.+..+. .+ ....-...+....-.|.++.+++++
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999765 222111111 00 0001112233344445566666665
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCC-
Q 048364 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER- 214 (400)
Q Consensus 136 ~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 214 (400)
..+.......|... +++-+...... .+++....+...-.+++.++..++++-..+|+.+.|..++.+|.+.
T Consensus 163 ~~~Pvsa~~~p~~v----fLrqnv~~ntp----vekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 163 AKVPVSAWNAPFQV----FLRQNVVDNTP----VEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred hhCCcccccchHHH----HHHHhccCCch----HHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 55432222222221 24443333322 4444444443333577777777777777788888888888777763
Q ss_pred ---CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048364 215 ---NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266 (400)
Q Consensus 215 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 266 (400)
+..-|..++-+ .++...+..+++-|.+.|+.|+..|+...+-.+.+.|.
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 23334444433 67777777777777777888888777777766666443
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=1.1e-10 Score=94.39 Aligned_cols=293 Identities=11% Similarity=0.084 Sum_probs=209.6
Q ss_pred hHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC-CCh------hhHHHHHH
Q 048364 18 SILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE-RNA------VTWNTMIK 89 (400)
Q Consensus 18 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~-~~~------~~~~~l~~ 89 (400)
.|-.=++.+. .+++++|.++|-+|.+.... +..+.-++-+.| ..|..|.|+++.+.+.+ ||. .....|..
T Consensus 38 ~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 38 DYVKGLNFLL-SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHHhHHHHHh-hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 4444444443 45899999999999984322 445666777888 99999999999999875 442 23445667
Q ss_pred HHHcCCChHHHHHHHhhCCCCC---hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhh
Q 048364 90 GYSKSGNVCEARDFFERMPLRN---VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGL 166 (400)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 166 (400)
-|...|-+|.|.++|..+...+ ..+...|+..|.+..+|++|+++-+++. ..+-. +++.-|
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~-k~~~q----~~~~eI----------- 179 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLV-KLGGQ----TYRVEI----------- 179 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HcCCc----cchhHH-----------
Confidence 7888999999999999988643 3467778999999999999999999988 32222 222111
Q ss_pred hhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCc---ccHHHHHHHHHhCCChhhHHHHHHHHH
Q 048364 167 LMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNV---ISWTALICGSAHRGYSEDALSLFEMMQ 243 (400)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~ 243 (400)
...|..|...+....+.+.|..++.+..+.|+ ..--.+...+...|+++.|.+.++...
T Consensus 180 ------------------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 180 ------------------AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred ------------------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHH
Confidence 12344455566667788889999988876433 334445678889999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHH-hccCCccHHHH
Q 048364 244 ATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR-TMRLEPNVIIW 322 (400)
Q Consensus 244 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~p~~~~~ 322 (400)
+.+...-..+...|..+|.+.|+.++....+..+.+. .+....-..+.+.-....-.+.|...+. .+.-+|+...+
T Consensus 242 eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf 318 (389)
T COG2956 242 EQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGF 318 (389)
T ss_pred HhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHH
Confidence 8866555677888999999999999999999888743 3344444444444444444556655554 44778999999
Q ss_pred HHHHHHHHh---cCCHHHHHHHHHHHHHcC
Q 048364 323 GSFLAACKE---HKQFDMAERVIKQALRMV 349 (400)
Q Consensus 323 ~~l~~~~~~---~~~~~~a~~~~~~~~~~~ 349 (400)
..++..-.. .|...+-...++.|+...
T Consensus 319 ~rl~~~~l~daeeg~~k~sL~~lr~mvge~ 348 (389)
T COG2956 319 HRLMDYHLADAEEGRAKESLDLLRDMVGEQ 348 (389)
T ss_pred HHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence 999887643 445666667777776644
No 52
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.49 E-value=2.8e-11 Score=107.59 Aligned_cols=194 Identities=19% Similarity=0.224 Sum_probs=145.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC-------C----CcccHHHHHHHHHhCCChhhHHHHHHHHHHC-----CC-CCCH
Q 048364 189 TILVDMYAKCGFLKYALMVFELMEE-------R----NVISWTALICGSAHRGYSEDALSLFEMMQAT-----GV-KPNE 251 (400)
Q Consensus 189 ~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~-~p~~ 251 (400)
+.+...|...+++++|..+|+++.. + -..+++.|..+|.+.|++++|...+++..+- |. .|..
T Consensus 245 ~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v 324 (508)
T KOG1840|consen 245 NILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEV 324 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHH
Confidence 3577788888888888888887764 1 1346777888889999988887777665431 21 2222
Q ss_pred -HHHHHHHHHHHhcCChhhHHHHHHHhhhhcC--CCCC----hhhHHHHHHHHHhcCChHHHHHHHHhc---------cC
Q 048364 252 -MTFTGVLTACVHTGLVDEGRKYFKMIDEEYD--LEPR----IQHYGCMVDLFGKAGFLEEAYEVIRTM---------RL 315 (400)
Q Consensus 252 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~---------~~ 315 (400)
..++.+...|...+++++|..+++...+... +.++ ..+++.|...|...|++++|++++++. +.
T Consensus 325 ~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~ 404 (508)
T KOG1840|consen 325 AAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKK 404 (508)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCc
Confidence 2456667778889999999999987765432 2222 357899999999999999999999987 22
Q ss_pred Ccc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC--CCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 316 EPN-VIIWGSFLAACKEHKQFDMAERVIKQALRM----VK--PENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 316 ~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
.+. ...++.+...|.+.+++++|.++|.+.... |. | ....+|..|+..|...|+++.|.++.+....
T Consensus 405 ~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~-~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 405 DYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHP-DVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred ChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 332 456788999999999999999998876653 21 3 5567899999999999999999999888864
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.47 E-value=4.1e-10 Score=93.85 Aligned_cols=290 Identities=12% Similarity=0.105 Sum_probs=217.6
Q ss_pred HHHHHH--cCCChHHHHHHHhhCC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcc
Q 048364 87 MIKGYS--KSGNVCEARDFFERMP---LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHL 161 (400)
Q Consensus 87 l~~~~~--~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~ 161 (400)
+..+.. -.|++..|+++..+-. +.....|..-.++--+.|+.+.+-.++.+.- +..-.++...+.+..+.....
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaa-e~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAA-ELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHh-ccCCCchHHHHHHHHHHHHhC
Confidence 444443 3799999999998755 3345566667778889999999999999987 322234445566667778888
Q ss_pred cchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCC-----------cccHHHHHHHHHhCC
Q 048364 162 GSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERN-----------VISWTALICGSAHRG 230 (400)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~l~~~~~~~~ 230 (400)
|+.+. |..-.+.+.+.+. -++.+......+|.+.|++.....++.++.+.. ..+|+.+++-....+
T Consensus 167 ~d~~a--A~~~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 167 RDYPA--ARENVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred CCchh--HHHHHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 99888 8888888877763 356777888999999999999999999998732 235777776666666
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 048364 231 YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVI 310 (400)
Q Consensus 231 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 310 (400)
..+.-...++..... .+-++..-.+++.-+.+.|+.++|.++.++..++ +..|+.. ..-.+.+-++...-.+..
T Consensus 244 ~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~----~~~~~l~~~d~~~l~k~~ 317 (400)
T COG3071 244 GSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC----RLIPRLRPGDPEPLIKAA 317 (400)
T ss_pred cchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH----HHHhhcCCCCchHHHHHH
Confidence 666666666665443 3445666677888889999999999999998855 5555521 122345667776666666
Q ss_pred Hhc--cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcccccc
Q 048364 311 RTM--RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRK 388 (400)
Q Consensus 311 ~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 388 (400)
++- ..+.+.-.+.+|...|.+.+.+.+|...|+..++.. ++..+|..+..++.+.|+.++|.+..++....-.+|
T Consensus 318 e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~---~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 318 EKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR---PSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 655 222234678889999999999999999999999888 599999999999999999999999998887554444
Q ss_pred c
Q 048364 389 A 389 (400)
Q Consensus 389 ~ 389 (400)
.
T Consensus 395 ~ 395 (400)
T COG3071 395 N 395 (400)
T ss_pred C
Confidence 3
No 54
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.46 E-value=1.4e-09 Score=96.27 Aligned_cols=355 Identities=11% Similarity=0.037 Sum_probs=243.1
Q ss_pred hcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC--------CChhhHHHHHHHHHcCCC
Q 048364 26 CTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE--------RNAVTWNTMIKGYSKSGN 96 (400)
Q Consensus 26 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~ 96 (400)
+++..-++.|..++....+. ++-+..+|.+....- .+|..+...++.++... -+...|-.=...|-..|.
T Consensus 416 larLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags 494 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS 494 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence 33444455555555555443 223444554444444 55555555555544321 123333333334444444
Q ss_pred hHHHHHHHhhCC-----CC-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCC-CHHHHHHHHHHhhcccchhhhhh
Q 048364 97 VCEARDFFERMP-----LR-NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP-DQMTIGAVLSGCSHLGSVGLLMG 169 (400)
Q Consensus 97 ~~~a~~~~~~~~-----~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~a 169 (400)
.--+..+..... +. -..+|+.-...|.+.+.++-|..+|...+ .+-| +...|......--..|..+. .
T Consensus 495 v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al---qvfp~k~slWlra~~~ek~hgt~Es--l 569 (913)
T KOG0495|consen 495 VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL---QVFPCKKSLWLRAAMFEKSHGTRES--L 569 (913)
T ss_pred hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH---hhccchhHHHHHHHHHHHhcCcHHH--H
Confidence 444433333322 11 22466666777777778888888887776 3344 34455555555555666666 6
Q ss_pred hhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCC
Q 048364 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATG 246 (400)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 246 (400)
..+++.+...- +.....|......+-..|+...|..++....+ | +...|.+.+.....+.+++.|..+|.+....
T Consensus 570 ~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~- 647 (913)
T KOG0495|consen 570 EALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI- 647 (913)
T ss_pred HHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc-
Confidence 66676666553 33455666677778888999999999988876 3 4457888888889999999999999988764
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHH
Q 048364 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGS 324 (400)
Q Consensus 247 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~ 324 (400)
.|+...|..-+....-.++.++|.+++++..+ .++.-...|..+.+.+-+.++.+.|.+.|..- ..-| ....|-.
T Consensus 648 -sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWll 724 (913)
T KOG0495|consen 648 -SGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLL 724 (913)
T ss_pred -CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHH
Confidence 67778787777777778999999999999996 44445677888999999999999999988876 4445 5567777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhccccccccCcccc
Q 048364 325 FLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395 (400)
Q Consensus 325 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 395 (400)
+...=-+.|++-.|..++++..-++ | .+...|...+++-.+.|..+.|..++.+..+. -|..+.-|.
T Consensus 725 LakleEk~~~~~rAR~ildrarlkN-P-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWa 791 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKN-P-KNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWA 791 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcC-C-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHH
Confidence 7777788899999999999999999 9 89999999999999999999998877666532 134444443
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.1e-09 Score=95.22 Aligned_cols=262 Identities=13% Similarity=0.051 Sum_probs=204.1
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHH
Q 048364 111 NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATI 190 (400)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (400)
++.....-..-+...+++.+..++.+...+.. ++....+-.-|.++...|+... -..+-..+.+. .+..+.+|-+
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~--Lf~lsh~LV~~-yP~~a~sW~a 317 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNK--LFLLSHKLVDL-YPSKALSWFA 317 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccch--HHHHHHHHHHh-CCCCCcchhh
Confidence 44555555667788899999999999988444 4445556666678888888665 44444444443 3556788889
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCC---cccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 048364 191 LVDMYAKCGFLKYALMVFELMEERN---VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267 (400)
Q Consensus 191 l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 267 (400)
+..-|...|+..+|++.|.+...-| ...|-.+..+|+-.|..|+|+..|...-+. ++-...-+.-+..-|.+.++.
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccH
Confidence 9999999999999999999877643 357999999999999999999999877664 111112233345568889999
Q ss_pred hhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-----cC---Cc-cHHHHHHHHHHHHhcCCHHH
Q 048364 268 DEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-----RL---EP-NVIIWGSFLAACKEHKQFDM 337 (400)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-----~~---~p-~~~~~~~l~~~~~~~~~~~~ 337 (400)
+.|.++|.+.. ++.| |+...+-+.-.....+.+.+|..+|+.. .+ .+ -..+++.|..+|.+.+++++
T Consensus 397 kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 397 KLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred HHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 99999999998 4444 6777888887788889999999999876 11 11 44578999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 338 AERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 338 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
|+..+++.+... | .+..++..++-.|...|+++.|.+.|.+..-
T Consensus 474 AI~~~q~aL~l~-~-k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 474 AIDYYQKALLLS-P-KDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHHHHcC-C-CchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999 8 8999999999999999999999999887653
No 56
>PF13041 PPR_2: PPR repeat family
Probab=99.41 E-value=7e-13 Score=79.62 Aligned_cols=50 Identities=30% Similarity=0.592 Sum_probs=42.7
Q ss_pred CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048364 214 RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263 (400)
Q Consensus 214 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 263 (400)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67788888888888888888888888888888888888888888888764
No 57
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=3.2e-10 Score=96.78 Aligned_cols=290 Identities=14% Similarity=0.113 Sum_probs=200.0
Q ss_pred HHHHHHHHcCCChHHHHHHHhhCC--CCC-hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHH-HHHHHHHHhhc
Q 048364 85 NTMIKGYSKSGNVCEARDFFERMP--LRN-VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQM-TIGAVLSGCSH 160 (400)
Q Consensus 85 ~~l~~~~~~~~~~~~a~~~~~~~~--~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~ 160 (400)
-...+-|.++|.+++|++.|.... .|| +..|.....+|...|+|+++.+--.+.+ .+.|+-. .+..-.+++-.
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkAL---El~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKAL---ELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHh---hcCcHHHHHHHHHHHHHHh
Confidence 344556778899999999998876 566 7788888889999999999888887777 5566643 55555566666
Q ss_pred ccchhhhh--------------------hhhhhhH---------HHhcc--ccchHHHHHHHHHHHHh---------c--
Q 048364 161 LGSVGLLM--------------------GKSAHGF---------IVKNE--WELNEQIATILVDMYAK---------C-- 198 (400)
Q Consensus 161 ~~~~~~~~--------------------a~~~~~~---------~~~~~--~~~~~~~~~~l~~~~~~---------~-- 198 (400)
.|++++++ +.+++.. +.+++ +-|+.....+....+-. .
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 66655410 1111111 11011 22333333322222210 0
Q ss_pred --------------C---CHHHHHHHHHhccC-----C--C---cc------cHHHHHHHHHhCCChhhHHHHHHHHHHC
Q 048364 199 --------------G---FLKYALMVFELMEE-----R--N---VI------SWTALICGSAHRGYSEDALSLFEMMQAT 245 (400)
Q Consensus 199 --------------g---~~~~A~~~~~~~~~-----~--~---~~------~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 245 (400)
+ .+..|...+.+-.. + + .. +...-..-+.-.|+.-+|..-|+..+..
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 0 11222221111100 1 1 11 1111112234568889999999999887
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHH
Q 048364 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIW 322 (400)
Q Consensus 246 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~ 322 (400)
...++.. |--+..+|...++.++.++.|+.... +.| ++.+|..-.+.+.-.+++++|..-|++. .+.| +...|
T Consensus 356 ~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~---ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~ 431 (606)
T KOG0547|consen 356 DPAFNSL-YIKRAAAYADENQSEKMWKDFNKAED---LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAY 431 (606)
T ss_pred CcccchH-HHHHHHHHhhhhccHHHHHHHHHHHh---cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHH
Confidence 5544432 66777789999999999999999983 344 6788999999999999999999999998 7777 45677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 323 GSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
-.+..+..+++++++++..|++.+++. | ..+..|+....++...++++.|.+.|+..++
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkkF-P-~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKKF-P-NCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-C-CCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 777777889999999999999999999 9 8999999999999999999999999998876
No 58
>PF13041 PPR_2: PPR repeat family
Probab=99.37 E-value=1.4e-12 Score=78.35 Aligned_cols=50 Identities=32% Similarity=0.708 Sum_probs=46.9
Q ss_pred CChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhc
Q 048364 110 RNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSH 160 (400)
Q Consensus 110 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 160 (400)
||+.+||++|.+|++.|++++|.++|++|. +.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~-~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMK-KRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHcC
Confidence 788999999999999999999999999999 88999999999999999875
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.35 E-value=1e-09 Score=102.00 Aligned_cols=261 Identities=11% Similarity=-0.015 Sum_probs=177.9
Q ss_pred ChhhHHHHHHHHHh-----cCCcchHHHHHHHHHhcCCCCCCHH-HHHHHHHHhh---------cccchhhhhhhhhhhH
Q 048364 111 NVASWSAMIAAYLN-----AGAYDPGLKLFREMISNEGLTPDQM-TIGAVLSGCS---------HLGSVGLLMGKSAHGF 175 (400)
Q Consensus 111 ~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~ll~~~~---------~~~~~~~~~a~~~~~~ 175 (400)
+...|...+++-.. .+.+++|.++|++.. ...|+.. .|..+..++. ..++.+. |...++.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al---~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~--A~~~~~~ 329 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCV---NMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIK--AKEHAIK 329 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHH---hcCCccHHHHHHHHHHHHHHHHcCCcccchHHHH--HHHHHHH
Confidence 45566666655322 234678999999988 4466543 4544444433 2234566 7888887
Q ss_pred HHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHH
Q 048364 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEM 252 (400)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 252 (400)
+.+... .+...+..+..++...|++++|...|++..+ | +...+..+...+...|++++|+..+++..+.... +..
T Consensus 330 Al~ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~ 407 (553)
T PRK12370 330 ATELDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAA 407 (553)
T ss_pred HHhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chh
Confidence 777653 3567788888889999999999999999876 3 3456788888999999999999999999886432 222
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHH-HHHHHHHHH
Q 048364 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVI-IWGSFLAAC 329 (400)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~-~~~~l~~~~ 329 (400)
.+..++..+...|++++|...++++.+. .+| ++..+..+..++...|++++|...++++ ...|+.. ..+.+...|
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 3333444566789999999999988743 234 4455777888899999999999999988 4455544 445555666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhccc
Q 048364 330 KEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 330 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 385 (400)
...| +.|...++++.+...- ...-...+...|.-.|+-+.+..+ +++.+.+
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQR--IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhH--hhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7777 4777777776664421 111122245556666776666665 7777654
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.35 E-value=6.2e-10 Score=92.01 Aligned_cols=196 Identities=15% Similarity=0.104 Sum_probs=124.9
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHH
Q 048364 112 VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191 (400)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (400)
...+..+...+...|++++|.+.+++..+. .|+ +...+..+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~---~p~------------------------------------~~~~~~~l 71 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEH---DPD------------------------------------DYLAYLAL 71 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---Ccc------------------------------------cHHHHHHH
Confidence 345666677777777777777777776611 222 22334445
Q ss_pred HHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCh
Q 048364 192 VDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP-NEMTFTGVLTACVHTGLV 267 (400)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~ 267 (400)
...|...|++++|.+.+++..+ .+...+..+...+...|++++|...+++.......| ....+..+..++...|++
T Consensus 72 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (234)
T TIGR02521 72 ALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDF 151 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCH
Confidence 5556666666666666665553 233455556666677777777777777766542222 234555666677777888
Q ss_pred hhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048364 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQA 345 (400)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 345 (400)
++|...+++..+. .+.+...+..+...+...|++++|...+++. ...| +...+..+...+...|+.++|..+.+.+
T Consensus 152 ~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 152 DKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8888888777742 2334556777777788888888888887776 2223 4455566677777788888888777776
Q ss_pred HHc
Q 048364 346 LRM 348 (400)
Q Consensus 346 ~~~ 348 (400)
...
T Consensus 230 ~~~ 232 (234)
T TIGR02521 230 QKL 232 (234)
T ss_pred Hhh
Confidence 554
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=1.8e-10 Score=93.41 Aligned_cols=226 Identities=12% Similarity=0.049 Sum_probs=113.9
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHH
Q 048364 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY 195 (400)
Q Consensus 116 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (400)
+-+..+|.+.|-+.+|.+.++.-+ .-.|-+.||..+-++|.+..+... |..++..-.+.- +.++.........+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL---~q~~~~dTfllLskvY~ridQP~~--AL~~~~~gld~f-P~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSL---TQFPHPDTFLLLSKVYQRIDQPER--ALLVIGEGLDSF-PFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHh---hcCCchhHHHHHHHHHHHhccHHH--HHHHHhhhhhcC-CchhhhhhhhHHHH
Confidence 345666666666666666666655 224455566666666666555555 555554443331 22333334444555
Q ss_pred HhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 048364 196 AKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK 272 (400)
Q Consensus 196 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 272 (400)
-..++.++|.++|+...+ .++....++...|.-.++++-|+..|+++...|+. +...|+.+.-+|.-.++++-+..
T Consensus 301 eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 555555555555555544 13334444444555555555555555555555544 44455555555555555555555
Q ss_pred HHHHhhhhcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHhc--cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048364 273 YFKMIDEEYDLEPR--IQHYGCMVDLFGKAGFLEEAYEVIRTM--RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348 (400)
Q Consensus 273 ~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (400)
-|++.... -..|+ ..+|-.+.......|++..|.+.|+-. ........+|.|.-.-.+.|++++|..++..+.+.
T Consensus 380 sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 380 SFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 55555421 22222 233444444444555555555555443 21223334555554455555555555555555444
Q ss_pred C
Q 048364 349 V 349 (400)
Q Consensus 349 ~ 349 (400)
.
T Consensus 459 ~ 459 (478)
T KOG1129|consen 459 M 459 (478)
T ss_pred C
Confidence 4
No 62
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.31 E-value=1.4e-10 Score=105.56 Aligned_cols=232 Identities=13% Similarity=0.045 Sum_probs=138.3
Q ss_pred cCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHH
Q 048364 141 NEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWT 220 (400)
Q Consensus 141 ~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 220 (400)
..|+.|+..||..+|..|+..|+.+. |. ++..|.-...+.+..+++.++......++.+.+. +|...+|.
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdiea--at-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt 87 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEA--AT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYT 87 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcc--cc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHH
Confidence 44666666666666666666666665 44 5555555555555556666665555555554443 45555666
Q ss_pred HHHHHHHhCCChhh-----------------------HHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 048364 221 ALICGSAHRGYSED-----------------------ALSLFEMMQA-TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKM 276 (400)
Q Consensus 221 ~l~~~~~~~~~~~~-----------------------a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 276 (400)
.|..+|...||..- ...++..+.- .+.-||..+ .+.-..-.|-++.+.+++..
T Consensus 88 ~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqllkll~~ 164 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLLKLLAK 164 (1088)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHHHHHhh
Confidence 66666666665432 2222222110 112222221 22222334555555555544
Q ss_pred hhhhcCCCCChhhHHHHHHHHHh-cCChHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc
Q 048364 277 IDEEYDLEPRIQHYGCMVDLFGK-AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355 (400)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 355 (400)
+.......|... +++-... ...+++-..+.....-.|+..+|..++.+-...|+.+.|..++.+|.+.|.| .++
T Consensus 165 ~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp-ir~ 239 (1088)
T KOG4318|consen 165 VPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP-IRA 239 (1088)
T ss_pred CCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC-ccc
Confidence 432111111111 1222222 2234444444444422799999999999999999999999999999999977 777
Q ss_pred hHHHHHHHHhhcccchHHHHHHHHHHhccccccccCcc
Q 048364 356 GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSS 393 (400)
Q Consensus 356 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 393 (400)
..|..|+-+ .|+...+..+++.|.+.|+.|+.++-
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ 274 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQ 274 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchh
Confidence 777777655 78888899999999999999988763
No 63
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.29 E-value=2.7e-08 Score=89.89 Aligned_cols=373 Identities=16% Similarity=0.085 Sum_probs=261.3
Q ss_pred hhHHHHhCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCC--
Q 048364 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPER-- 79 (400)
Q Consensus 3 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~-- 79 (400)
.+.+++...++.|...|..|.-++.+.|+++.+-+.|++....-+ .....|..+...+ ..|.-..|..+++.-..+
T Consensus 310 ~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~ 388 (799)
T KOG4162|consen 310 LLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSE 388 (799)
T ss_pred HHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhccccc
Confidence 456677777888999999999999999999999999999876533 3566788888888 999999999999877643
Q ss_pred ---ChhhHHHHHHHHH-cCCChHHHHHHHhhCCC--------CChhhHHHHHHHHHhc-----------CCcchHHHHHH
Q 048364 80 ---NAVTWNTMIKGYS-KSGNVCEARDFFERMPL--------RNVASWSAMIAAYLNA-----------GAYDPGLKLFR 136 (400)
Q Consensus 80 ---~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~ 136 (400)
|+..+-..-..|. +.+..++++.+-.+... -....|..+.-+|... ....++++.++
T Consensus 389 ~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale 468 (799)
T KOG4162|consen 389 QPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALE 468 (799)
T ss_pred CCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHH
Confidence 2333333334444 45666776666554431 1344555555444432 23567888899
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCC--
Q 048364 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER-- 214 (400)
Q Consensus 137 ~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 214 (400)
+..+..+..|+...|.++ -|+..++++. |.....+..+.+-..+...|.-|.-.+...+++.+|+.+.+.....
T Consensus 469 ~av~~d~~dp~~if~lal--q~A~~R~l~s--Al~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~ 544 (799)
T KOG4162|consen 469 EAVQFDPTDPLVIFYLAL--QYAEQRQLTS--ALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG 544 (799)
T ss_pred HHHhcCCCCchHHHHHHH--HHHHHHhHHH--HHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence 988566666766555444 3556677888 8888888888877778888988888899999999999988766531
Q ss_pred C---------------------cccHHHHHHHHH-----------------------hCCChhhHHHHHHHHH-------
Q 048364 215 N---------------------VISWTALICGSA-----------------------HRGYSEDALSLFEMMQ------- 243 (400)
Q Consensus 215 ~---------------------~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~m~------- 243 (400)
+ ..+...++...- ..++..++.+....+.
T Consensus 545 ~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~ 624 (799)
T KOG4162|consen 545 DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL 624 (799)
T ss_pred hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh
Confidence 1 112222221111 0012222222222111
Q ss_pred -HCC---------CC--CCH------HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHH
Q 048364 244 -ATG---------VK--PNE------MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305 (400)
Q Consensus 244 -~~~---------~~--p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 305 (400)
..| +. |+. ..+......+.+.++.++|...+.+..+ ..+-....|......+...|..++
T Consensus 625 ~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 625 KSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred hhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHH
Confidence 011 01 111 1233445566778888888888887763 334456677777788889999999
Q ss_pred HHHHHHhc-cCCccH-HHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHH
Q 048364 306 AYEVIRTM-RLEPNV-IIWGSFLAACKEHKQFDMAER--VIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLM 381 (400)
Q Consensus 306 a~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 381 (400)
|.+.|... .+.|+. .+..++...+.+.|+...|.. ++.++.+.+ | .++..|..++..+...|+.++|.+.|...
T Consensus 703 A~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 703 AKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-P-LNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 99999887 777754 578899999999999888888 999999999 9 99999999999999999999999999988
Q ss_pred hcc
Q 048364 382 LNQ 384 (400)
Q Consensus 382 ~~~ 384 (400)
.+.
T Consensus 781 ~qL 783 (799)
T KOG4162|consen 781 LQL 783 (799)
T ss_pred Hhh
Confidence 764
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.29 E-value=8.5e-10 Score=102.60 Aligned_cols=256 Identities=12% Similarity=0.003 Sum_probs=176.1
Q ss_pred ChhhHHHHHHHHHc-----CCChHHHHHHHhhCCC--C-ChhhHHHHHHHHHh---------cCCcchHHHHHHHHHhcC
Q 048364 80 NAVTWNTMIKGYSK-----SGNVCEARDFFERMPL--R-NVASWSAMIAAYLN---------AGAYDPGLKLFREMISNE 142 (400)
Q Consensus 80 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~m~~~~ 142 (400)
+...|...+.+... .++.++|+++|++... | +...|..+..+|.. .+++++|...+++..
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al--- 331 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT--- 331 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH---
Confidence 44555566655322 2346788888988763 3 34566666655542 234788999999888
Q ss_pred CCCC-CHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CCc-cc
Q 048364 143 GLTP-DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--RNV-IS 218 (400)
Q Consensus 143 ~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~ 218 (400)
.+.| +...+..+...+...|++++ |...++.+.+.+ +.+...+..+..++...|++++|...+++..+ |+. ..
T Consensus 332 ~ldP~~~~a~~~lg~~~~~~g~~~~--A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~ 408 (553)
T PRK12370 332 ELDHNNPQALGLLGLINTIHSEYIV--GSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAA 408 (553)
T ss_pred hcCCCCHHHHHHHHHHHHHccCHHH--HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhh
Confidence 3345 45567777778888899999 999999888876 33456778889999999999999999999876 332 23
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHH
Q 048364 219 WTALICGSAHRGYSEDALSLFEMMQATGVKP-NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297 (400)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (400)
+..++..+...|++++|...+++..... .| +...+..+..++...|+.++|...++++... .+.+....+.+...|
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEY 485 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHH
Confidence 3444555677899999999999987653 34 3455677778888999999999999988742 222344456666677
Q ss_pred HhcCChHHHHHHHHhc----cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 298 GKAGFLEEAYEVIRTM----RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 298 ~~~g~~~~a~~~~~~~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
...| ++|...++.+ ...|....+ +-..+.-.|+-+.+..+ +++.+.+
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7777 4777777666 323333333 33445556777776655 8777766
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.28 E-value=4.6e-09 Score=93.69 Aligned_cols=239 Identities=12% Similarity=0.126 Sum_probs=136.9
Q ss_pred hhhHHHHHH-HhCCHHHHHHHHhhCCC----------CChh-hHHHHHHHHHcCCChHHHHHHHhhCC----------CC
Q 048364 53 VATSLLHEY-VVTSFGFARKLFDELPE----------RNAV-TWNTMIKGYSKSGNVCEARDFFERMP----------LR 110 (400)
Q Consensus 53 ~~~~l~~~~-~~g~~~~a~~~~~~~~~----------~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~----------~~ 110 (400)
+...+...| ..|+++.|..+++...+ +... ..+.+...|...+++++|..+|+++. .|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 444456666 77777777666665543 1221 23345667778888888888887764 11
Q ss_pred -ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccch-HHHH
Q 048364 111 -NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN-EQIA 188 (400)
Q Consensus 111 -~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~ 188 (400)
-..+++.|..+|.+.|++++|..+++...+- + ....-. ..|. ...+
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I---------~----------------------~~~~~~-~~~~v~~~l 328 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEI---------Y----------------------EKLLGA-SHPEVAAQL 328 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHH---------H----------------------HHhhcc-ChHHHHHHH
Confidence 2346777888888999999988888776510 0 000000 0011 1223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 048364 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268 (400)
Q Consensus 189 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 268 (400)
+.+...++..+++++|..++... .+++.......-.--..+++.+...|...|+++
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~a------------------------l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ 384 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKA------------------------LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYK 384 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHH------------------------HHHHHhhccccchHHHHHHHHHHHHHHHhcchh
Confidence 44555566666666666665432 222221111000012245666666666666666
Q ss_pred hHHHHHHHhhhhc----C-CCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc--------cCCccH-HHHHHHHHHHHhcC
Q 048364 269 EGRKYFKMIDEEY----D-LEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM--------RLEPNV-IIWGSFLAACKEHK 333 (400)
Q Consensus 269 ~a~~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~--------~~~p~~-~~~~~l~~~~~~~~ 333 (400)
+|..+++.+.... + ..+ ....++.+...|.+.+++.+|.++|.+. ...|+. .+|..|...|...|
T Consensus 385 ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g 464 (508)
T KOG1840|consen 385 EAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQG 464 (508)
T ss_pred HHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcc
Confidence 6666666555321 1 111 1334566667777777777777776665 223433 47888888888888
Q ss_pred CHHHHHHHHHHHHH
Q 048364 334 QFDMAERVIKQALR 347 (400)
Q Consensus 334 ~~~~a~~~~~~~~~ 347 (400)
+++.|+++.+.+..
T Consensus 465 ~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 465 NYEAAEELEEKVLN 478 (508)
T ss_pred cHHHHHHHHHHHHH
Confidence 88888888877763
No 66
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.24 E-value=8.1e-08 Score=85.26 Aligned_cols=361 Identities=14% Similarity=0.049 Sum_probs=218.1
Q ss_pred chhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC---CChhhHHHHHHHH
Q 048364 16 SFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE---RNAVTWNTMIKGY 91 (400)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 91 (400)
..|.....-.+...|+.++|.......++..+. +...|+.+.-.+ ...++++|++.|..... .|...|.-+.-.-
T Consensus 41 geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ 119 (700)
T KOG1156|consen 41 GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQ 119 (700)
T ss_pred chhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 344444444455567777777777666664433 555666666666 66778888888877653 3455565555555
Q ss_pred HcCCChHHHHHHHhhCC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHH------Hhhccc
Q 048364 92 SKSGNVCEARDFFERMP---LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLS------GCSHLG 162 (400)
Q Consensus 92 ~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~------~~~~~~ 162 (400)
++.++++.....-.... ......|..+..++.-.|++..|..++++..+...-.|+...+..... ...+.|
T Consensus 120 ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g 199 (700)
T KOG1156|consen 120 IQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAG 199 (700)
T ss_pred HHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 66677666666655544 224467888888888899999999999998844334566666554333 234455
Q ss_pred chhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CCcccHHHHH-HHHHhCCChhhHH-HH
Q 048364 163 SVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--RNVISWTALI-CGSAHRGYSEDAL-SL 238 (400)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~-~~~~~~~~~~~a~-~~ 238 (400)
..+. +.+.+...... +.-....-..-...+.+.+++++|..++..+.. ||...|+... .++.+..+.-++. .+
T Consensus 200 ~~q~--ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~l 276 (700)
T KOG1156|consen 200 SLQK--ALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKAL 276 (700)
T ss_pred cHHH--HHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 5444 43333322211 111122223455678889999999999998887 4444444433 3332222222222 33
Q ss_pred H----------------------------------HHHHHCCCCCCHHHHHHHHHHHHhcCChhh----HHHHHHHhhhh
Q 048364 239 F----------------------------------EMMQATGVKPNEMTFTGVLTACVHTGLVDE----GRKYFKMIDEE 280 (400)
Q Consensus 239 ~----------------------------------~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~ 280 (400)
| ..+.+.|+++-. ..+..-+-.....+- +..+...+. .
T Consensus 277 y~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf---~dl~SLyk~p~k~~~le~Lvt~y~~~L~-~ 352 (700)
T KOG1156|consen 277 YAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVF---KDLRSLYKDPEKVAFLEKLVTSYQHSLS-G 352 (700)
T ss_pred HHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchh---hhhHHHHhchhHhHHHHHHHHHHHhhcc-c
Confidence 3 333333433221 112111111111111 111111111 1
Q ss_pred cC----------CCCChhhH--HHHHHHHHhcCChHHHHHHHHhc-cCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048364 281 YD----------LEPRIQHY--GCMVDLFGKAGFLEEAYEVIRTM-RLEPNVI-IWGSFLAACKEHKQFDMAERVIKQAL 346 (400)
Q Consensus 281 ~~----------~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~ 346 (400)
.| -+|+...| -.++..|-+.|+++.|+..++.. +-.|+.+ .|..=.+.+...|++++|..++++..
T Consensus 353 ~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~ 432 (700)
T KOG1156|consen 353 TGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQ 432 (700)
T ss_pred ccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 11 14555444 45678888999999999999988 7677654 56666688999999999999999999
Q ss_pred HcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcccc
Q 048364 347 RMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386 (400)
Q Consensus 347 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 386 (400)
+.+ . +|...-.--+....+++..++|.++.....+.|.
T Consensus 433 elD-~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 433 ELD-T-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred hcc-c-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 998 5 4665555677778899999999999888877664
No 67
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.24 E-value=1.2e-09 Score=84.42 Aligned_cols=194 Identities=12% Similarity=-0.010 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccCCCc---ccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048364 186 QIATILVDMYAKCGFLKYALMVFELMEERNV---ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACV 262 (400)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 262 (400)
.+...|.-.|...|++..|..-+++..+.|+ .+|..+...|.+.|+.+.|.+.|++...... -+....|....-+|
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC 114 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHH
Confidence 4556778889999999999999999987544 4677888899999999999999999887632 24566777777788
Q ss_pred hcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHH
Q 048364 263 HTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAER 340 (400)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 340 (400)
..|++++|.+.|+.........-...+|..+.-|..+.|+++.|.+.|++. ...| ...+.-.+.......|++..|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 999999999999999876444445678999999999999999999999987 4455 34567778888889999999999
Q ss_pred HHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 341 VIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
++++....+ + .+.......++.-.+.|+-+.+-++=..+.
T Consensus 195 ~~~~~~~~~-~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 195 YLERYQQRG-G-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHhcc-c-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 999999888 6 788888888888889999888877655554
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=4.2e-10 Score=91.30 Aligned_cols=223 Identities=12% Similarity=0.082 Sum_probs=186.3
Q ss_pred HHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CCcccH-HHHHHHHHh
Q 048364 152 GAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--RNVISW-TALICGSAH 228 (400)
Q Consensus 152 ~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~l~~~~~~ 228 (400)
+.+-++|.+.|-+.+ |+..++...+.. |.+.+|..|..+|.+..+...|..+|.+..+ |..+|| .-+...+..
T Consensus 227 ~Q~gkCylrLgm~r~--AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRR--AEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhh--hHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 457788899999988 888888777664 5566777888999999999999999988876 544454 446678888
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 048364 229 RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308 (400)
Q Consensus 229 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 308 (400)
.++.++|.++|+...+.. ..+.....++...|.-.++++-|..+|+++. +.|. .++..|+.+.-+|.-.+++|-++.
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiL-qmG~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRIL-QMGA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHH-HhcC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 899999999999988763 3366777778888888999999999999999 4464 467889999999999999999999
Q ss_pred HHHhc---cCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 309 VIRTM---RLEPN--VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 309 ~~~~~---~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
-|++. --.|+ ..+|-.+....+..||+..|.+.|+-.+..+ + .+...++.|...-.+.|+.++|..++....+
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-A-QHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-c-chHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 98887 22243 4578888888899999999999999999999 8 8899999999999999999999999988765
No 69
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.3e-08 Score=88.66 Aligned_cols=272 Identities=15% Similarity=0.070 Sum_probs=184.3
Q ss_pred chhhhhHHHHHH-HhCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHcCCChHHHHHHHhhCC---CCChhhHHHHHHHH
Q 048364 50 HVYVATSLLHEY-VVTSFGFARKLFDELPER---NAVTWNTMIKGYSKSGNVCEARDFFERMP---LRNVASWSAMIAAY 122 (400)
Q Consensus 50 ~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~ 122 (400)
+......-..-+ ..+++.+..++++.+.+. ....+..-|..+...|+..+-..+=.++. +....+|-++.--|
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYY 322 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHH
Confidence 344444455555 788888888888888753 44556666677777777666555555544 33567888888888
Q ss_pred HhcCCcchHHHHHHHHHhcCCCCCC-HHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccc-hHHHHHHHHHHHHhcCC
Q 048364 123 LNAGAYDPGLKLFREMISNEGLTPD-QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWEL-NEQIATILVDMYAKCGF 200 (400)
Q Consensus 123 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 200 (400)
...|++++|.+.|.+.. .+.|. ...|......++-.+..++ +...+..+.+.-..- -+..| +.--|.+.+.
T Consensus 323 l~i~k~seARry~SKat---~lD~~fgpaWl~fghsfa~e~EhdQ--AmaaY~tAarl~~G~hlP~LY--lgmey~~t~n 395 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKAT---TLDPTFGPAWLAFGHSFAGEGEHDQ--AMAAYFTAARLMPGCHLPSLY--LGMEYMRTNN 395 (611)
T ss_pred HHhcCcHHHHHHHHHHh---hcCccccHHHHHHhHHhhhcchHHH--HHHHHHHHHHhccCCcchHHH--HHHHHHHhcc
Confidence 88899999999988876 44444 2467777777777777777 666655554432111 11222 2334667788
Q ss_pred HHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHC----C--CCCCHHHHHHHHHHHHhcCChhhHH
Q 048364 201 LKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQAT----G--VKPNEMTFTGVLTACVHTGLVDEGR 271 (400)
Q Consensus 201 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~--~~p~~~~~~~l~~~~~~~~~~~~a~ 271 (400)
++.|.+.|..... .|+...+-+.-.....+.+.+|..+|+..+.. + ...-..+++.|.+++.+.+.+++|+
T Consensus 396 ~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 8888888877764 36667777776667777888888888776521 0 0113446777888888888888888
Q ss_pred HHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHHHHHHHHHHHH
Q 048364 272 KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWGSFLAACK 330 (400)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~ 330 (400)
..+++... -.+.+..++.++.-.|...|+++.|.+.|.+. .+.|+..+-..++..+.
T Consensus 476 ~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 476 DYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 88887774 33457777888888888888888888888877 77777766666655443
No 70
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=1.1e-08 Score=84.23 Aligned_cols=353 Identities=12% Similarity=0.094 Sum_probs=196.1
Q ss_pred HHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCC---------------ChhhH---
Q 048364 24 KSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPER---------------NAVTW--- 84 (400)
Q Consensus 24 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~---------------~~~~~--- 84 (400)
.++-+.|++++|...+.-+... -.++...+..+...+ -.|.+.+|..+-.+.++. |..-+
T Consensus 65 ~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~f 143 (557)
T KOG3785|consen 65 HCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTF 143 (557)
T ss_pred HHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHH
Confidence 3445678888888888776653 344555555555555 777777777777666531 11111
Q ss_pred -----------HHHHHHHHcCCChHHHHHHHhhCC--CCChhhHHH-HHHHHHhcCCcchHHHHHHHHHhcCCCCCCHH-
Q 048364 85 -----------NTMIKGYSKSGNVCEARDFFERMP--LRNVASWSA-MIAAYLNAGAYDPGLKLFREMISNEGLTPDQM- 149 (400)
Q Consensus 85 -----------~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~- 149 (400)
-++.....-.-.+++|+++++++. .|+-...|. +.-+|.+..-++-+.++++-..++ -||+.
T Consensus 144 h~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q---~pdSti 220 (557)
T KOG3785|consen 144 HSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ---FPDSTI 220 (557)
T ss_pred HHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh---CCCcHH
Confidence 122222333345777888887766 333344443 345677777788888877777622 34432
Q ss_pred HHHHHHHHhhcc--cchhhh----h------hhhhhhHHHhccc------c------c-----hHHHHHHHHHHHHhcCC
Q 048364 150 TIGAVLSGCSHL--GSVGLL----M------GKSAHGFIVKNEW------E------L-----NEQIATILVDMYAKCGF 200 (400)
Q Consensus 150 ~~~~ll~~~~~~--~~~~~~----~------a~~~~~~~~~~~~------~------~-----~~~~~~~l~~~~~~~g~ 200 (400)
..|..+....+. |+..+. + .....+.+.+.++ + | -+..-..|+-.|.+.++
T Consensus 221 A~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~d 300 (557)
T KOG3785|consen 221 AKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQND 300 (557)
T ss_pred HHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeeccccc
Confidence 222222221111 111100 0 0011111222110 0 0 11122334445777888
Q ss_pred HHHHHHHHHhccCCCcccHHHHHHHHHhCCC-------hhhHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhhHHH
Q 048364 201 LKYALMVFELMEERNVISWTALICGSAHRGY-------SEDALSLFEMMQATGVKPNE-MTFTGVLTACVHTGLVDEGRK 272 (400)
Q Consensus 201 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~ 272 (400)
..+|..+.+++...++.-|-.-.-.++..|+ ..-|...|+-.-..+..-|. ..-.++..++.-..++++...
T Consensus 301 VqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~ 380 (557)
T KOG3785|consen 301 VQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLT 380 (557)
T ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 8888888777664444333332223333333 23344444333233322222 233455566666778888888
Q ss_pred HHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCC-ccHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 273 YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLE-PNVIIWG-SFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~-p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
+++.+. .+-...|...+| +.++++..|++.+|+++|-.+ +-+ .|..+|. .+.++|.+.++++.|..++ ++.+
T Consensus 381 YlnSi~-sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~ 455 (557)
T KOG3785|consen 381 YLNSIE-SYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTN 455 (557)
T ss_pred HHHHHH-HHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcC
Confidence 888887 444444554444 788999999999999999888 322 3556664 4567888999998885554 4445
Q ss_pred CCCCCchHHHHHHHHhhcccchHHHHHHHHHHhccc
Q 048364 350 KPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 350 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 385 (400)
.|.........+..-|.+.+.+--|-+.|+.+....
T Consensus 456 t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 456 TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 342334455566677888888888888888777543
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=1.1e-07 Score=83.52 Aligned_cols=346 Identities=12% Similarity=0.040 Sum_probs=203.9
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHHHH--cCC
Q 048364 19 ILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYS--KSG 95 (400)
Q Consensus 19 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~--~~~ 95 (400)
.-+=++-+...|++++|.+...+++..++. +...+.+-+.++ ..+++++|+++.+.-........-.+=.+|| +.+
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIVPD-DEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcc
Confidence 334455667889999999999999998744 444445555555 9999999998776655322221111345554 789
Q ss_pred ChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCC-CCHHHHHHHHHHhhcccchhhhhhhhhhh
Q 048364 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLT-PDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174 (400)
Q Consensus 96 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~ll~~~~~~~~~~~~~a~~~~~ 174 (400)
..|+|+..++-....+..+...-...+-+.|++++|+++|+.+. ..+.. -+...-..++.+-.. .. ..
T Consensus 94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~-kn~~dd~d~~~r~nl~a~~a~---------l~-~~ 162 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLA-KNNSDDQDEERRANLLAVAAA---------LQ-VQ 162 (652)
T ss_pred cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHHHh---------hh-HH
Confidence 99999999996665565566666778889999999999999997 33321 122222222222211 11 11
Q ss_pred HHHhccccc--hHHHHHHHHHHHHhcCCHHHHHHHHHhcc--------CCCc----------ccHHHHHHHHHhCCChhh
Q 048364 175 FIVKNEWEL--NEQIATILVDMYAKCGFLKYALMVFELME--------ERNV----------ISWTALICGSAHRGYSED 234 (400)
Q Consensus 175 ~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~----------~~~~~l~~~~~~~~~~~~ 234 (400)
.+......| +-..+......+...|++.+|+++++... +.|. ..--.+.-.+...|+..+
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 122222222 22333345566788999999999998872 1111 122335556778999999
Q ss_pred HHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCCh-h-hHHHHHHHhhhhc--------CCCCChhhHHHHHHHHHhc
Q 048364 235 ALSLFEMMQATGVKPNEMT----FTGVLTACVHTGLV-D-EGRKYFKMIDEEY--------DLEPRIQHYGCMVDLFGKA 300 (400)
Q Consensus 235 a~~~~~~m~~~~~~p~~~~----~~~l~~~~~~~~~~-~-~a~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~ 300 (400)
|..+|....+.. .+|... .|.|+.. ..-.++ + .+...++...... .-..-...+....-...-.
T Consensus 243 a~~iy~~~i~~~-~~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 243 ASSIYVDIIKRN-PADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHHhc-CCCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998875 334422 2333322 111111 1 1111222111000 0000011122222222234
Q ss_pred CChHHHHHHHHhc-cCCccHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHH
Q 048364 301 GFLEEAYEVIRTM-RLEPNVIIWGSFLAACKE-HKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVR 378 (400)
Q Consensus 301 g~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 378 (400)
+..+.+.++.... +..|....=..+..+... .....++..++...-+.. |..+..+...++......|+++.|.+++
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~-p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGH-PEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5556677776666 445554443334444332 235788888888888877 7444667777777888999999999999
Q ss_pred H
Q 048364 379 K 379 (400)
Q Consensus 379 ~ 379 (400)
.
T Consensus 400 ~ 400 (652)
T KOG2376|consen 400 S 400 (652)
T ss_pred H
Confidence 8
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.20 E-value=8.3e-09 Score=79.95 Aligned_cols=194 Identities=16% Similarity=0.023 Sum_probs=94.7
Q ss_pred HHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHH
Q 048364 151 IGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSA 227 (400)
Q Consensus 151 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 227 (400)
...+.-.|...|+... |..-++..++.. +.+..++..+...|.+.|+.+.|.+.|++..+ .+-...|....-+|
T Consensus 38 rlqLal~YL~~gd~~~--A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQ--AKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHH--HHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 3334444555555555 555555555443 12344455555555555555555555555443 23344455555555
Q ss_pred hCCChhhHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHH
Q 048364 228 HRGYSEDALSLFEMMQATGV-KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306 (400)
Q Consensus 228 ~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 306 (400)
..|++++|...|++....-- .--..||..+.-+..+.|+.+.|..+|++..+ -.+..+.....+.+...+.|++..|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHH
Confidence 55555555555555544311 11223455555555555555555555555552 1122233444455555555555555
Q ss_pred HHHHHhc--cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 307 YEVIRTM--RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 307 ~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
..+++.. +..++..+....|+.-...|+.+.+-++=.++.+..
T Consensus 193 r~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 193 RLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 5555554 223455555555555555555555555444444444
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.20 E-value=2.1e-09 Score=91.65 Aligned_cols=220 Identities=13% Similarity=-0.037 Sum_probs=128.7
Q ss_pred HHHhcCCcchHHHHHHHHHhcCCCCCCH--HHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhc
Q 048364 121 AYLNAGAYDPGLKLFREMISNEGLTPDQ--MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198 (400)
Q Consensus 121 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (400)
.....++.+.++.-+.+++......|+. ..|..+...+...|+.+. |...+....+... .+...|+.+...|...
T Consensus 35 ~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~--A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~ 111 (296)
T PRK11189 35 PLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRAL--ARNDFSQALALRP-DMADAYNYLGIYLTQA 111 (296)
T ss_pred ccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHcCC-CCHHHHHHHHHHHHHC
Confidence 3344456677777777777333333432 346666666777777777 7777777766542 3466777777777788
Q ss_pred CCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 048364 199 GFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275 (400)
Q Consensus 199 g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 275 (400)
|++++|...|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...++
T Consensus 112 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~ 189 (296)
T PRK11189 112 GNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLK 189 (296)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHH
Confidence 888888877777765 3 3455666677777778888888877777665 3332211222222334566777777776
Q ss_pred HhhhhcCCCCChhhHHHHHHHHHhcCChHHH--HHHHHhc-cC----Cc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048364 276 MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA--YEVIRTM-RL----EP-NVIIWGSFLAACKEHKQFDMAERVIKQALR 347 (400)
Q Consensus 276 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a--~~~~~~~-~~----~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (400)
.... ...|+... ..+. ....|+...+ .+.+.+. .. .| ....|..+...+.+.|++++|...|+++.+
T Consensus 190 ~~~~--~~~~~~~~-~~~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 190 QRYE--KLDKEQWG-WNIV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HHHh--hCCccccH-HHHH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5542 22232221 1222 2234444332 2222211 11 11 224677777777778888888888888877
Q ss_pred cCCC
Q 048364 348 MVKP 351 (400)
Q Consensus 348 ~~~~ 351 (400)
.+ |
T Consensus 265 ~~-~ 267 (296)
T PRK11189 265 NN-V 267 (296)
T ss_pred hC-C
Confidence 77 5
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.18 E-value=2.8e-08 Score=84.81 Aligned_cols=91 Identities=13% Similarity=0.036 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 048364 186 QIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKP-NEMTFTGVLTAC 261 (400)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~ 261 (400)
..|..+...|...|++++|...|++..+ | +...|+.+...+...|++++|...|++..+. .| +..++..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 3344455555555555555555555543 2 2344555555555555555555555555543 22 234444455555
Q ss_pred HhcCChhhHHHHHHHhh
Q 048364 262 VHTGLVDEGRKYFKMID 278 (400)
Q Consensus 262 ~~~~~~~~a~~~~~~~~ 278 (400)
...|++++|.+.++...
T Consensus 143 ~~~g~~~eA~~~~~~al 159 (296)
T PRK11189 143 YYGGRYELAQDDLLAFY 159 (296)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 55555555555555555
No 75
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.17 E-value=5.6e-08 Score=87.87 Aligned_cols=123 Identities=16% Similarity=0.121 Sum_probs=71.7
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHH
Q 048364 220 TALICGSAHRGYSEDALSLFEMMQATGVKPN-EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLF 297 (400)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 297 (400)
.-+...|...|++++|++.+++..+. .|+ ...|..-.+.+-+.|++.+|...++..+. +.+ |...-+..+..+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~---LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARE---LDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---CChhhHHHHHHHHHHH
Confidence 44456666677777777777766665 344 45566666666677777777777776662 222 344444455566
Q ss_pred HhcCChHHHHHHHHhc---cCCccH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048364 298 GKAGFLEEAYEVIRTM---RLEPNV--------IIWGSFLAACKEHKQFDMAERVIKQALR 347 (400)
Q Consensus 298 ~~~g~~~~a~~~~~~~---~~~p~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (400)
.++|++++|.+++... +..|-. +.......+|.+.|++..|+..|..+.+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6777777777666655 212211 1113345566677777766666655554
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.16 E-value=5e-08 Score=88.15 Aligned_cols=127 Identities=17% Similarity=0.098 Sum_probs=100.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHH
Q 048364 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR-IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAAC 329 (400)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~ 329 (400)
++..+.+.|...|++++|..+++..... .|+ +..|..-.+.|-+.|++.+|.+.++.. .+.+ |...=+..+..+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 5566677788999999999999999843 454 678888899999999999999999988 4444 556666677888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCch--------HHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 330 KEHKQFDMAERVIKQALRMVKPENDGG--------VFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 330 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
.+.|++++|..++....+.+.. +... .....+.+|.+.|++..|++-|..+.+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~-~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVD-PLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCC-cccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999998877731 2222 224567788999999999887766654
No 77
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.15 E-value=7.1e-10 Score=93.17 Aligned_cols=247 Identities=13% Similarity=0.089 Sum_probs=139.8
Q ss_pred HHHHcCCChHHHHHHHhhCCC--C--ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccch
Q 048364 89 KGYSKSGNVCEARDFFERMPL--R--NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV 164 (400)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~ 164 (400)
+-+.-.|++..++.-.+ ... + +......+.+++...|+++.++ .++. . +-.|.......+...+....+-
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~-~-~~~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIK-K-SSSPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS--T-TSSCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhc-c-CCChhHHHHHHHHHHHhCccch
Confidence 34556788888886555 221 1 2334555678888888876544 4443 2 2266666655555444432322
Q ss_pred hhhhhhhhhhHHHhcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHH
Q 048364 165 GLLMGKSAHGFIVKNEWE-LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQ 243 (400)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 243 (400)
+. +..-+......... .+..+......++...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.
T Consensus 83 e~--~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 83 ES--ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HC--HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22 22222221112212 23333333445566678888887777665 345555566777788888888888888877
Q ss_pred HCCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-
Q 048364 244 ATGVKPNEMTFTGVLTACVH----TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP- 317 (400)
Q Consensus 244 ~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p- 317 (400)
+.+ .| .+...+..++.. .+.+.+|..+|+++.. ...+++.+.+.+..+....|++++|.+++.+. ...|
T Consensus 159 ~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 159 QID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp CCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred hcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 642 23 334444444332 2357778888888764 44566777777777777888888888777776 3333
Q ss_pred cHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCC
Q 048364 318 NVIIWGSFLAACKEHKQF-DMAERVIKQALRMVKP 351 (400)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~ 351 (400)
+..+...++.+....|+. +.+.+++.++.... |
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~-p 267 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN-P 267 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT-T
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC-C
Confidence 455666667666677766 56667777777766 5
No 78
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.14 E-value=8e-09 Score=86.87 Aligned_cols=217 Identities=11% Similarity=0.047 Sum_probs=95.1
Q ss_pred HHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCC-CHHHHHHHHHHhhcccc
Q 048364 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP-DQMTIGAVLSGCSHLGS 163 (400)
Q Consensus 85 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~ 163 (400)
.-+.+++...|+.+.++.-...-..|.......+...+...++-+.++.-+++.. .....+ +..........+...|+
T Consensus 39 ~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~-~~~~~~~~~~~~~~~A~i~~~~~~ 117 (290)
T PF04733_consen 39 FYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELL-ADQAGESNEIVQLLAATILFHEGD 117 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCC-CTS---CHHHHHHHHHHHHCCCCH
T ss_pred HHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHH-HhccccccHHHHHHHHHHHHHcCC
Confidence 3344555555655555444444344444444444333322233344444443333 222221 11122222233444555
Q ss_pred hhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCC-cccHHHHHHH----HHhCCChhhHHHH
Q 048364 164 VGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERN-VISWTALICG----SAHRGYSEDALSL 238 (400)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~----~~~~~~~~~a~~~ 238 (400)
++. |.+++... .+.......+.+|.+.++++.|.+.++.|.+-+ ..+...+..+ +...+.+.+|..+
T Consensus 118 ~~~--AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~ 189 (290)
T PF04733_consen 118 YEE--ALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYI 189 (290)
T ss_dssp HHH--HHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred HHH--HHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 555 55544432 233344445555666666666666666655421 1222222222 2222345666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCCh-HHHHHHHHhc
Q 048364 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFL-EEAYEVIRTM 313 (400)
Q Consensus 239 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~ 313 (400)
|+++.+. ..++..+.+.+..++...|++++|.+++++... .-+-++.+...++-+....|+. +.+.+.+..+
T Consensus 190 f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 190 FEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 6665443 344555555555566666666666666655542 1122344455555555555554 4445555555
No 79
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=2.4e-06 Score=75.47 Aligned_cols=361 Identities=13% Similarity=0.102 Sum_probs=211.4
Q ss_pred CCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHHHhCCHHHHHHHHhhCCCCChhhHHHHHHHHH
Q 048364 13 PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPERNAVTWNTMIKGYS 92 (400)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 92 (400)
+-|...+..=+-++.+.+.+++|+.+.+.=... ...+...|.-.-..|+.++.++|+..++...+.+..+...-...+.
T Consensus 43 pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~-~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlY 121 (652)
T KOG2376|consen 43 PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL-LVINSFFFEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLY 121 (652)
T ss_pred CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh-hhcchhhHHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 445666777777888889999998554331110 0111111222222228899999999998555555556666777888
Q ss_pred cCCChHHHHHHHhhCCCC-------------------------------ChhhHHH---HHHHHHhcCCcchHHHHHHHH
Q 048364 93 KSGNVCEARDFFERMPLR-------------------------------NVASWSA---MIAAYLNAGAYDPGLKLFREM 138 (400)
Q Consensus 93 ~~~~~~~a~~~~~~~~~~-------------------------------~~~~~~~---l~~~~~~~g~~~~a~~~~~~m 138 (400)
+.+++++|.++|+.+... ...+|.. ....+...|++.+|+++++..
T Consensus 122 rl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 122 RLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKA 201 (652)
T ss_pred HHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 899999999998877311 1113332 234566788899999888887
Q ss_pred Hh-------cCC-----CCCCHHH-HHHHHHHhhcccchhhhhhhhhhhHHHhccccch---HHHHHHHHHHHH------
Q 048364 139 IS-------NEG-----LTPDQMT-IGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN---EQIATILVDMYA------ 196 (400)
Q Consensus 139 ~~-------~~~-----~~p~~~~-~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~------ 196 (400)
.+ ... +.-+..+ -..+.-++...|+.++ +..++..+.+....-. ....|.|+.+-.
T Consensus 202 ~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e--a~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d 279 (652)
T KOG2376|consen 202 LRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE--ASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFD 279 (652)
T ss_pred HHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH--HHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCc
Confidence 21 100 0111111 1223345667788888 8887777776553211 111122211100
Q ss_pred ---------------------------------------hcCCHHHHHHHHHhccCCC-cccHHHHHHHH--HhCCChhh
Q 048364 197 ---------------------------------------KCGFLKYALMVFELMEERN-VISWTALICGS--AHRGYSED 234 (400)
Q Consensus 197 ---------------------------------------~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~--~~~~~~~~ 234 (400)
-.+..+.+.++........ ...+.+++... ++...+..
T Consensus 280 ~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~k 359 (652)
T KOG2376|consen 280 GDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKK 359 (652)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhh
Confidence 0112222222222222211 12233333322 22234667
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHH--------HhhhhcCCCCChhhHHHHHHHHHhcCChHHH
Q 048364 235 ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK--------MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306 (400)
Q Consensus 235 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 306 (400)
+.+++...-+....-........++.....|+++.|.+++. .+. +.+.. +.+...+...+.+.++-+.|
T Consensus 360 a~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~-~~~~~--P~~V~aiv~l~~~~~~~~~a 436 (652)
T KOG2376|consen 360 AIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSIL-EAKHL--PGTVGAIVALYYKIKDNDSA 436 (652)
T ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhh-hhccC--hhHHHHHHHHHHhccCCccH
Confidence 77777766554222223455566677788999999999998 444 22333 34455577778888887777
Q ss_pred HHHHHhc-----cCCccHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHH
Q 048364 307 YEVIRTM-----RLEPNVI----IWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERV 377 (400)
Q Consensus 307 ~~~~~~~-----~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 377 (400)
..++.+. .-.+... ++..+...-.+.|+-++|..+++++.+.+ | ++..+...++.+|++. +.+.|..+
T Consensus 437 ~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~-~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 437 SAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-P-NDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred HHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-C-chHHHHHHHHHHHHhc-CHHHHHHH
Confidence 7777665 1122222 33333444457899999999999999998 8 8999999999999987 66777776
Q ss_pred HHHHh
Q 048364 378 RKLML 382 (400)
Q Consensus 378 ~~~m~ 382 (400)
-+.+.
T Consensus 514 ~k~L~ 518 (652)
T KOG2376|consen 514 SKKLP 518 (652)
T ss_pred hhcCC
Confidence 65543
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.09 E-value=1.3e-06 Score=77.86 Aligned_cols=359 Identities=12% Similarity=0.059 Sum_probs=239.2
Q ss_pred CCCchh-HHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCC---ChhhHHHH
Q 048364 13 PSDSFS-ILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPER---NAVTWNTM 87 (400)
Q Consensus 13 ~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~---~~~~~~~l 87 (400)
+|-..+ |...+. |-..+++...++..+.+++.-+. ...+....--.+ ..|+-++|....+..... +.+.|..+
T Consensus 4 ~~KE~~lF~~~lk-~yE~kQYkkgLK~~~~iL~k~~e-HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~ 81 (700)
T KOG1156|consen 4 SPKENALFRRALK-CYETKQYKKGLKLIKQILKKFPE-HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVL 81 (700)
T ss_pred ChHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHhCCc-cchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHH
Confidence 444444 334444 44667888899988888873222 222222222223 889999999999888764 55789988
Q ss_pred HHHHHcCCChHHHHHHHhhCC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCH-HHHHHHHHHhhcccc
Q 048364 88 IKGYSKSGNVCEARDFFERMP---LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ-MTIGAVLSGCSHLGS 163 (400)
Q Consensus 88 ~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~ 163 (400)
.-.+-...++++|++.|.... +.|...|.-+.-.-.+.++++.....-.... ...|+. ..|.....++.-.|+
T Consensus 82 gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LL---ql~~~~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 82 GLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLL---QLRPSQRASWIGFAVAQHLLGE 158 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHH---HhhhhhHHHHHHHHHHHHHHHH
Confidence 888888999999999999865 3367788877777788899999988888877 345554 467788888888899
Q ss_pred hhhhhhhhhhhHHHhcc-ccchHHHHHHH------HHHHHhcCCHHHHHHHHHhccCC--Cc-ccHHHHHHHHHhCCChh
Q 048364 164 VGLLMGKSAHGFIVKNE-WELNEQIATIL------VDMYAKCGFLKYALMVFELMEER--NV-ISWTALICGSAHRGYSE 233 (400)
Q Consensus 164 ~~~~~a~~~~~~~~~~~-~~~~~~~~~~l------~~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~l~~~~~~~~~~~ 233 (400)
... |..+.+...+.. ..|+...+.-. .......|..+.|.+.+...... |- ..-.+-...+.+.++.+
T Consensus 159 y~~--A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lE 236 (700)
T KOG1156|consen 159 YKM--ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLE 236 (700)
T ss_pred HHH--HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHH
Confidence 988 999998888766 34555544322 23345678888888887766542 22 22334456788999999
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChhhHH-HHHHHhhhh-------------------------------
Q 048364 234 DALSLFEMMQATGVKPNEMTFTGVLTACV-HTGLVDEGR-KYFKMIDEE------------------------------- 280 (400)
Q Consensus 234 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~-~~~~~~~~~------------------------------- 280 (400)
+|..++..+... .||...|...+..+. +-.+.-++. .+|....+.
T Consensus 237 eA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~ 314 (700)
T KOG1156|consen 237 EAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPL 314 (700)
T ss_pred hHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHH
Confidence 999999999987 567766655544433 222222222 333333221
Q ss_pred --cCCCCChhhHHHHHHHHHhcCChHH----HHHHHHhc-c------------CCccHH--HHHHHHHHHHhcCCHHHHH
Q 048364 281 --YDLEPRIQHYGCMVDLFGKAGFLEE----AYEVIRTM-R------------LEPNVI--IWGSFLAACKEHKQFDMAE 339 (400)
Q Consensus 281 --~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~-~------------~~p~~~--~~~~l~~~~~~~~~~~~a~ 339 (400)
.|+++ ++..+...|-.-...+- +..+...+ + -+|... ++..++..+-..|+++.|.
T Consensus 315 l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~ 391 (700)
T KOG1156|consen 315 LSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVAL 391 (700)
T ss_pred hhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHH
Confidence 12222 22333333322111111 11122222 1 145444 4566778889999999999
Q ss_pred HHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhccc
Q 048364 340 RVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 385 (400)
.+++.++..- | .-...|..=++.+...|+.++|..++++..+..
T Consensus 392 ~yId~AIdHT-P-TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 392 EYIDLAIDHT-P-TLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred HHHHHHhccC-c-hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 9999999998 7 777888888899999999999999999887644
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.6e-07 Score=79.12 Aligned_cols=153 Identities=10% Similarity=0.082 Sum_probs=68.3
Q ss_pred HHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCh
Q 048364 193 DMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL-TACV-HTGLV 267 (400)
Q Consensus 193 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~~~~ 267 (400)
..+...|+.++|.-.|+.... -+..+|.-|+.+|...|++.+|..+-+...+. .+-+..+.+.+. ..|. ...--
T Consensus 342 ~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~r 420 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMR 420 (564)
T ss_pred HHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhH
Confidence 334444555555544444332 13444555555555555555554444333322 122333333221 1111 11223
Q ss_pred hhHHHHHHHhhhhcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048364 268 DEGRKYFKMIDEEYDLEPR-IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWGSFLAACKEHKQFDMAERVIKQA 345 (400)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 345 (400)
++|.++++... ...|+ ....+.+...+...|..+++..++++. ...||....+.|...+...+.+++|...|..+
T Consensus 421 EKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 421 EKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred HHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44444444444 22332 223344444455555555555555554 44455555555555555555555555555555
Q ss_pred HHcC
Q 048364 346 LRMV 349 (400)
Q Consensus 346 ~~~~ 349 (400)
++.+
T Consensus 498 Lr~d 501 (564)
T KOG1174|consen 498 LRQD 501 (564)
T ss_pred HhcC
Confidence 5555
No 82
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.05 E-value=3.8e-06 Score=74.96 Aligned_cols=355 Identities=12% Similarity=0.099 Sum_probs=202.5
Q ss_pred hcccchhHHHHHHHHHHHHhC-cccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChHHHHHH
Q 048364 26 CTHFNNLTVIHHLHSHILKLG-FISHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDF 103 (400)
Q Consensus 26 ~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 103 (400)
+...|+...-...|+..+..- +.-...+|...+... ..|-.+.+..+++.-.+-++..-+..|..+++.+++++|.+.
T Consensus 112 l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~ 191 (835)
T KOG2047|consen 112 LIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQR 191 (835)
T ss_pred HHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHH
Confidence 344566666666666665542 233445677777777 777777888888887776766677778888888888888777
Q ss_pred HhhCCC--------------------------C--------------------C--hhhHHHHHHHHHhcCCcchHHHHH
Q 048364 104 FERMPL--------------------------R--------------------N--VASWSAMIAAYLNAGAYDPGLKLF 135 (400)
Q Consensus 104 ~~~~~~--------------------------~--------------------~--~~~~~~l~~~~~~~g~~~~a~~~~ 135 (400)
+..... | | ...|++|..-|.+.|++++|.++|
T Consensus 192 la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvy 271 (835)
T KOG2047|consen 192 LATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVY 271 (835)
T ss_pred HHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 655520 1 1 135888889999999999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhhcccchhh--------------------hhhhhhhhHHHhccc-----------cch
Q 048364 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGL--------------------LMGKSAHGFIVKNEW-----------ELN 184 (400)
Q Consensus 136 ~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~--------------------~~a~~~~~~~~~~~~-----------~~~ 184 (400)
++.. . ......-|..+..+|+.-..... .+...-++.+..... +.+
T Consensus 272 eeai-~--~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~n 348 (835)
T KOG2047|consen 272 EEAI-Q--TVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHN 348 (835)
T ss_pred HHHH-H--hheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCcc
Confidence 8877 2 23344445555555543221110 000111111111100 001
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccC---C------CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC---HH
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFELMEE---R------NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN---EM 252 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~ 252 (400)
+..|..-+. ...|+..+-...|.+..+ | -...|..+...|-..|+.+.|..+|++..+...+-- ..
T Consensus 349 V~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~ 426 (835)
T KOG2047|consen 349 VEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAE 426 (835)
T ss_pred HHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHH
Confidence 111111111 122444444555544432 1 123577778888888899999888888776533211 23
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhhhc----------CCCC------ChhhHHHHHHHHHhcCChHHHHHHHHhc---
Q 048364 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEY----------DLEP------RIQHYGCMVDLFGKAGFLEEAYEVIRTM--- 313 (400)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~--- 313 (400)
+|..-...-.+..+++.|.++++....-. +.++ +...|...++.--..|-++....+++++
T Consensus 427 vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL 506 (835)
T KOG2047|consen 427 VWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL 506 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34334444456677888888877665210 0011 1233444555555667777777777777
Q ss_pred c-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhh---cccchHHHHHHHHHHhcccccc
Q 048364 314 R-LEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT---MNEKWEGAERVRKLMLNQNVRK 388 (400)
Q Consensus 314 ~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~a~~~~~~m~~~~~~~ 388 (400)
. ..|-.. ......+-.+.-++++.+.+++-+....++.-...|+..+.-+. ...+.+.|+.+|++..+ |..|
T Consensus 507 riaTPqii--~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp 582 (835)
T KOG2047|consen 507 RIATPQII--INYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPP 582 (835)
T ss_pred hcCCHHHH--HHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCH
Confidence 2 223222 11222333455678888888888888744233445555444443 23478899999999988 5544
No 83
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=8.6e-07 Score=71.63 Aligned_cols=356 Identities=10% Similarity=0.062 Sum_probs=198.1
Q ss_pred CchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHHHhCCHHHHHHHHhhCCCC-ChhhHHHHHH--HH
Q 048364 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPER-NAVTWNTMIK--GY 91 (400)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~--~~ 91 (400)
+....+.|..+|-+..++..|-..++++...-++-...-+-..-+.|+.+.+.+|+.+...|... +...-..-+. ..
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIk 122 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIK 122 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 44445555555555555555555555554432221111111111122555555555555555432 1111111111 12
Q ss_pred HcCCChHHHHHHHhhCC-CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhh
Q 048364 92 SKSGNVCEARDFFERMP-LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGK 170 (400)
Q Consensus 92 ~~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~ 170 (400)
...+++..+..+.++.. +.+..+.+.......+.|+++.|++-|+...+-.|..|- ..|+.-+ +..+.++.+. |.
T Consensus 123 Yse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl-lAYniAL-aHy~~~qyas--AL 198 (459)
T KOG4340|consen 123 YSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL-LAYNLAL-AHYSSRQYAS--AL 198 (459)
T ss_pred cccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch-hHHHHHH-HHHhhhhHHH--HH
Confidence 34566667777777766 345666666666777899999999999998866677665 4565544 4446677777 88
Q ss_pred hhhhHHHhccccc-------------hH---------------HHHHHHHHHHHhcCCHHHHHHHHHhccC-----CCcc
Q 048364 171 SAHGFIVKNEWEL-------------NE---------------QIATILVDMYAKCGFLKYALMVFELMEE-----RNVI 217 (400)
Q Consensus 171 ~~~~~~~~~~~~~-------------~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~ 217 (400)
....++.++|+.. |+ ..+|.-...+.+.|+++.|.+.+-.|+. .|++
T Consensus 199 k~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPv 278 (459)
T KOG4340|consen 199 KHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPV 278 (459)
T ss_pred HHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCch
Confidence 8888888776531 11 1122233345678899999999988874 3666
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCC-CChhhHHHHHHH
Q 048364 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLE-PRIQHYGCMVDL 296 (400)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~ 296 (400)
|...+.-. -..+++.+..+-+.-+..... ....||..++-.||+..-++.|-.++.+-.. .... .+...|+ |+++
T Consensus 279 TLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~-lTyk~L~~Yly~-LLda 354 (459)
T KOG4340|consen 279 TLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAH-LTYKFLTPYLYD-LLDA 354 (459)
T ss_pred hhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcc-hhHHHhhHHHHH-HHHH
Confidence 66655422 223455555555666666533 4567888888899998888888887754431 1111 1233333 3444
Q ss_pred HH-hcCChHHHHHHHHhccCCccHHHHHHHHHHHH-hcCC----HHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccc
Q 048364 297 FG-KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK-EHKQ----FDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEK 370 (400)
Q Consensus 297 ~~-~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~-~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 370 (400)
+. ..-..++|++-+..+.-.-....-...+..-. +..+ ...+.+-+++..+.-.| +...-.+.|.+..+
T Consensus 355 LIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YLP-----VlMa~AkiyW~~~D 429 (459)
T KOG4340|consen 355 LITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYLP-----VLMAQAKIYWNLED 429 (459)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhccccc
Confidence 43 34456666666655510000111111112111 1111 23344445555554423 44556677889999
Q ss_pred hHHHHHHHHHHhc
Q 048364 371 WEGAERVRKLMLN 383 (400)
Q Consensus 371 ~~~a~~~~~~m~~ 383 (400)
+..+.++|..-.+
T Consensus 430 y~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 430 YPMVEKIFRKSVE 442 (459)
T ss_pred cHHHHHHHHHHHh
Confidence 9999999987664
No 84
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.05 E-value=5.1e-07 Score=74.34 Aligned_cols=289 Identities=13% Similarity=0.100 Sum_probs=165.5
Q ss_pred chhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHH---HHHHcCCChHHHHHHHhhCCCCChhhHHHH---HHHH
Q 048364 50 HVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMI---KGYSKSGNVCEARDFFERMPLRNVASWSAM---IAAY 122 (400)
Q Consensus 50 ~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---~~~~ 122 (400)
++.-.--+-..+ ..|++.+|+.-|....+-|+..|.++- ..|...|+...|+.-|+++.+..+..+.+- ...+
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 333444555666 889999999999999988887777765 467788888888888888774433333333 3467
Q ss_pred HhcCCcchHHHHHHHHHhcCCCCCCHHH----------------HHHHHHHhhcccchhhhhhhhhhhHHHhccccchHH
Q 048364 123 LNAGAYDPGLKLFREMISNEGLTPDQMT----------------IGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ 186 (400)
Q Consensus 123 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~----------------~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 186 (400)
.+.|++++|..=|+..++. .|+..+ ....+..+...|+... +......+++.. +.+..
T Consensus 117 lK~Gele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~--ai~~i~~llEi~-~Wda~ 190 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQN--AIEMITHLLEIQ-PWDAS 190 (504)
T ss_pred hhcccHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhh--HHHHHHHHHhcC-cchhH
Confidence 8899999999999998832 332211 1222333444555555 555555555543 34555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHH-------H
Q 048364 187 IATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT-------G 256 (400)
Q Consensus 187 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-------~ 256 (400)
.+..-..+|...|+...|+.-++...+ .+..++..+-..+...|+.+.++...++-++. .||....- .
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHH
Confidence 666666666666666666655444332 44555555556666666666666666665553 34432211 1
Q ss_pred HHHHHH------hcCChhhHHHHHHHhhhhcCCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc-HHHHH
Q 048364 257 VLTACV------HTGLVDEGRKYFKMIDEEYDLEPR-----IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN-VIIWG 323 (400)
Q Consensus 257 l~~~~~------~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~-~~~~~ 323 (400)
+...+. +.++|.++....+...+. .|. ...+..+-.++...|++.+|++...+. .+.|| +.++.
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~ 345 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHH
Confidence 111111 123444444444444421 121 122333444555556666666655555 44453 44555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 324 SFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 324 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
--..+|.-...+++|+.-|+.+.+.+
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 55556655556666666666666655
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.03 E-value=9.1e-07 Score=78.29 Aligned_cols=199 Identities=9% Similarity=-0.043 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCC-CCCH--HHHHHHHH
Q 048364 186 QIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGV-KPNE--MTFTGVLT 259 (400)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~--~~~~~l~~ 259 (400)
.....+...+...|++++|.+.+++..+ | +...+..+...+...|++++|...+++...... .|+. ..|..+..
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 3444566677888888888888888775 2 445667777888888888888888888776432 1222 23456777
Q ss_pred HHHhcCChhhHHHHHHHhhhhcCCCCChhhH-H--HHHHHHHhcCChHHHHHH--H-Hhc-cCCcc---HHHHHHHHHHH
Q 048364 260 ACVHTGLVDEGRKYFKMIDEEYDLEPRIQHY-G--CMVDLFGKAGFLEEAYEV--I-RTM-RLEPN---VIIWGSFLAAC 329 (400)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~a~~~--~-~~~-~~~p~---~~~~~~l~~~~ 329 (400)
.+...|++++|..+++.........+..... + .++.-+...|....+.+. + ... ...|. .........++
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~ 274 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALAL 274 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 7888888998888888875321111111111 1 223333344433333222 1 111 10011 12223456677
Q ss_pred HhcCCHHHHHHHHHHHHHcCCC-------CCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 330 KEHKQFDMAERVIKQALRMVKP-------ENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 330 ~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
...|+.+.|..+++.+...... ............++...|++++|.+.+......
T Consensus 275 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 275 AGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred hcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888899999888887764311 012334445555667889999999888877653
No 86
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=9.6e-07 Score=74.56 Aligned_cols=261 Identities=10% Similarity=0.041 Sum_probs=189.6
Q ss_pred CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHH----HHHHHHHhhcccchhhhhhhhhhhHHHhccccch
Q 048364 109 LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMT----IGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN 184 (400)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~----~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 184 (400)
.-|+.....+..++...|+.++|+..|++.+ .+.|+..+ |..++ ...|+.+. ...+...+....- .+
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~---~~dpy~i~~MD~Ya~LL---~~eg~~e~--~~~L~~~Lf~~~~-~t 299 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTL---CANPDNVEAMDLYAVLL---GQEGGCEQ--DSALMDYLFAKVK-YT 299 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHh---hCChhhhhhHHHHHHHH---HhccCHhh--HHHHHHHHHhhhh-cc
Confidence 3478888899999999999999999999987 55665432 44343 34555555 4444444433221 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccCCCc---ccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFELMEERNV---ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 261 (400)
..-|-.-+......++++.|..+-++..+.+. ..|-.-...+...|++++|.-.|+...... +.+...|..|+++|
T Consensus 300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsY 378 (564)
T KOG1174|consen 300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSY 378 (564)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHH
Confidence 12222223334466788899988888776443 444444577889999999999999887652 34678999999999
Q ss_pred HhcCChhhHHHHHHHhhhhcCCCCChhhHHHHH-HHHH-hcCChHHHHHHHHhc-cCCccH-HHHHHHHHHHHhcCCHHH
Q 048364 262 VHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV-DLFG-KAGFLEEAYEVIRTM-RLEPNV-IIWGSFLAACKEHKQFDM 337 (400)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~ 337 (400)
...|++.+|...-+...+ -++.+..+...+. ..+. .-.--++|.+++++. .+.|+- ...+.+...|...|+.++
T Consensus 379 LA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D 456 (564)
T KOG1174|consen 379 LAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKD 456 (564)
T ss_pred HhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccch
Confidence 999999999888877764 3444555555442 2222 233457899999987 778864 467788889999999999
Q ss_pred HHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 338 AERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 338 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
++.++++.+... +|......|...+...+.+.+|++.|......
T Consensus 457 ~i~LLe~~L~~~---~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 457 IIKLLEKHLIIF---PDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHHhhc---cccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 999999999887 48889999999999999999999998877653
No 87
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=2.7e-07 Score=74.50 Aligned_cols=186 Identities=12% Similarity=0.111 Sum_probs=109.7
Q ss_pred hhhHHHHHH-HhCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHcCCChHHHHHHHhhCC--CCChhhHHH-HHHHHHhc
Q 048364 53 VATSLLHEY-VVTSFGFARKLFDELPER---NAVTWNTMIKGYSKSGNVCEARDFFERMP--LRNVASWSA-MIAAYLNA 125 (400)
Q Consensus 53 ~~~~l~~~~-~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~-l~~~~~~~ 125 (400)
-+++.+..+ +..++++|++++..-.++ +....+.+..+|.+..++..|.+.++++. .|...-|.. -...+-+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 355666666 778888888887766653 44556777778888888888888888876 343333332 24556677
Q ss_pred CCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHh--hcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHH
Q 048364 126 GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGC--SHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKY 203 (400)
Q Consensus 126 g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 203 (400)
+.+.+|+++...|. + .|....-..-+.+. ...+++.. +..+.+..-.. -+..+.+.......+.|+++.
T Consensus 92 ~i~ADALrV~~~~~-D---~~~L~~~~lqLqaAIkYse~Dl~g--~rsLveQlp~e---n~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 92 CIYADALRVAFLLL-D---NPALHSRVLQLQAAIKYSEGDLPG--SRSLVEQLPSE---NEADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred cccHHHHHHHHHhc-C---CHHHHHHHHHHHHHHhcccccCcc--hHHHHHhccCC---CccchhccchheeeccccHHH
Confidence 88888888888776 2 13322222222222 23344444 44444433221 233444444555556777777
Q ss_pred HHHHHHhccC----CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCC
Q 048364 204 ALMVFELMEE----RNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248 (400)
Q Consensus 204 A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 248 (400)
|.+-|+...+ .....||..+. +.+.|+++.|++...++.++|++
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhh
Confidence 7777766665 23345554443 33556677777777777776653
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.99 E-value=4.1e-06 Score=74.12 Aligned_cols=293 Identities=12% Similarity=0.034 Sum_probs=141.8
Q ss_pred hHHHHHHHhcccchhHHHHHHHHHHHHhCc-ccchhhhhHHHH-HH-HhCCHHHHHHHHhhCCC--C-ChhhHHH---HH
Q 048364 18 SILHILKSCTHFNNLTVIHHLHSHILKLGF-ISHVYVATSLLH-EY-VVTSFGFARKLFDELPE--R-NAVTWNT---MI 88 (400)
Q Consensus 18 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~-~~-~~g~~~~a~~~~~~~~~--~-~~~~~~~---l~ 88 (400)
.|..+...+...|+.+.+.+.+....+... .++......+-. .+ ..|++++|...+++..+ | +...+.. ..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~ 87 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAF 87 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHH
Confidence 344444555555666666555555444322 122211111111 12 66677777776666542 2 2222221 11
Q ss_pred HHHHcCCChHHHHHHHhhCCCC---ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchh
Q 048364 89 KGYSKSGNVCEARDFFERMPLR---NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVG 165 (400)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~ 165 (400)
......+..+.+.+.++..... .......+...+...|++++|.+.+++.. ...|+
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al---~~~p~------------------ 146 (355)
T cd05804 88 GLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRAL---ELNPD------------------ 146 (355)
T ss_pred HhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCC------------------
Confidence 1111234444444444432211 12233334445566666666666666665 12232
Q ss_pred hhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCC-----Cc--ccHHHHHHHHHhCCChhhHHHH
Q 048364 166 LLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER-----NV--ISWTALICGSAHRGYSEDALSL 238 (400)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~l~~~~~~~~~~~~a~~~ 238 (400)
+...+..+..+|...|++++|...+++..+. +. ..|..+...+...|++++|..+
T Consensus 147 ------------------~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 147 ------------------DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred ------------------CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 2334455666666777777777777665541 11 1234566677777888888888
Q ss_pred HHHHHHCCC-CCCHHHH-H--HHHHHHHhcCChhhHHHH---HHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 048364 239 FEMMQATGV-KPNEMTF-T--GVLTACVHTGLVDEGRKY---FKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR 311 (400)
Q Consensus 239 ~~~m~~~~~-~p~~~~~-~--~l~~~~~~~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 311 (400)
+++...... .+..... + .++.-+...|....+.+. ......................++...|+.+.|...++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~ 288 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA 288 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 877654322 1111111 1 222223333433333332 11111100001111222245667778888999988888
Q ss_pred hc--cCCc---c------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 312 TM--RLEP---N------VIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 312 ~~--~~~p---~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
.+ .... . ....-....++...|+.++|.+.+.+.....
T Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 77 1111 1 1122222334568899999999998887654
No 89
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=2.8e-08 Score=87.02 Aligned_cols=218 Identities=14% Similarity=0.099 Sum_probs=161.2
Q ss_pred hcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCC---CcccHHHHHHHHHhCCChhhH
Q 048364 159 SHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER---NVISWTALICGSAHRGYSEDA 235 (400)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a 235 (400)
.+.|++.. |.-.|+..++.. +-+...|..|.......++-..|+..+.+..+- |....-.|.-.|...|.-..|
T Consensus 296 m~nG~L~~--A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 296 MKNGDLSE--AALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HhcCCchH--HHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 45666666 666666666654 336677777877777888888888888877763 445566666778888888888
Q ss_pred HHHHHHHHHCCCC-----C---CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHH
Q 048364 236 LSLFEMMQATGVK-----P---NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307 (400)
Q Consensus 236 ~~~~~~m~~~~~~-----p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 307 (400)
+..++.-.....+ + +...-.. ..+.....+....++|-.+....+..+|+.+...|.-.|--.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 8888887654211 0 0000000 1111222334445566555555565688888999999999999999999
Q ss_pred HHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 308 EVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 308 ~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
+.|+.. .++| |..+||.|...++...+.++|+..|+++++.. | .-.++...|+..|...|.|++|.+.|=..+.
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-P-~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ-P-GYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-C-CeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999998 7778 56689999999999999999999999999999 8 8889999999999999999999987766543
No 90
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=4.9e-07 Score=71.86 Aligned_cols=138 Identities=13% Similarity=0.115 Sum_probs=80.3
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHh----
Q 048364 224 CGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK---- 299 (400)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 299 (400)
..|++.|++++|++..+... +......=+..+.+..+.+-|.+.++.|.. -.+..+.+.|..++.+
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~----ided~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ----IDEDATLTQLAQAWVKLATG 185 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cchHHHHHHHHHHHHHHhcc
Confidence 44666666666666655411 222333333445556666666666666662 1234455555555443
Q ss_pred cCChHHHHHHHHhc--cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHH
Q 048364 300 AGFLEEAYEVIRTM--RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEG 373 (400)
Q Consensus 300 ~g~~~~a~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 373 (400)
.+.+.+|.-+|++| ...|+..+.+....++...|++++|..++++++... + .++.+...++-+-...|.-.+
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~-~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-A-KDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-C-CCHHHHHHHHHHHHHhCCChH
Confidence 34566666677776 356666666666666666777777777777777666 5 566666666665555555433
No 91
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.92 E-value=5.5e-06 Score=82.92 Aligned_cols=320 Identities=13% Similarity=0.032 Sum_probs=206.2
Q ss_pred HhCCHHHHHHHHhhCCC----CChhhHHHHHHHHHcCCChHHHHHHHhhCC----CC----C----hhhHHHHHHHHHhc
Q 048364 62 VVTSFGFARKLFDELPE----RNAVTWNTMIKGYSKSGNVCEARDFFERMP----LR----N----VASWSAMIAAYLNA 125 (400)
Q Consensus 62 ~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~----~----~~~~~~l~~~~~~~ 125 (400)
..|+++.+...++.++. .+..........+...|++++|...+.... .. + ......+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 66778888888877742 233333444555667899999988887643 11 1 11222234456789
Q ss_pred CCcchHHHHHHHHHhcCCCCCCH----HHHHHHHHHhhcccchhhhhhhhhhhHHHhccc-----cchHHHHHHHHHHHH
Q 048364 126 GAYDPGLKLFREMISNEGLTPDQ----MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW-----ELNEQIATILVDMYA 196 (400)
Q Consensus 126 g~~~~a~~~~~~m~~~~~~~p~~----~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~ 196 (400)
|++++|...+++...... ..+. ...+.+...+...|+++. +...+........ .........+...+.
T Consensus 466 g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~~~~~G~~~~--A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 466 GDPEEAERLAELALAELP-LTWYYSRIVATSVLGEVHHCKGELAR--ALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred CCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 999999999998873211 1111 234555666778899998 8887777664321 112345566777888
Q ss_pred hcCCHHHHHHHHHhccC-------CC----cccHHHHHHHHHhCCChhhHHHHHHHHHHCC--CCC--CHHHHHHHHHHH
Q 048364 197 KCGFLKYALMVFELMEE-------RN----VISWTALICGSAHRGYSEDALSLFEMMQATG--VKP--NEMTFTGVLTAC 261 (400)
Q Consensus 197 ~~g~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p--~~~~~~~l~~~~ 261 (400)
..|+++.|...+++... ++ ...+..+...+...|++++|...+++..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 99999999998877653 11 1223445566777899999999998875531 112 233444566677
Q ss_pred HhcCChhhHHHHHHHhhhhcCCCCChhhH-----HHHHHHHHhcCChHHHHHHHHhc-cCC-ccH----HHHHHHHHHHH
Q 048364 262 VHTGLVDEGRKYFKMIDEEYDLEPRIQHY-----GCMVDLFGKAGFLEEAYEVIRTM-RLE-PNV----IIWGSFLAACK 330 (400)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~-~~~-p~~----~~~~~l~~~~~ 330 (400)
...|+.++|...++....-.........+ ...+..+...|+.+.|...+... ... ... ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999999988875321111111111 11224456689999999998776 111 111 12345677888
Q ss_pred hcCCHHHHHHHHHHHHHcCC----CCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 331 EHKQFDMAERVIKQALRMVK----PENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 331 ~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
..|++++|...++++..... +.....+...+..++.+.|+.++|...+.+..+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999877521 1123356778888899999999999998888753
No 92
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.87 E-value=1.1e-05 Score=72.08 Aligned_cols=332 Identities=14% Similarity=0.151 Sum_probs=208.4
Q ss_pred hhhhhHHHHHH-HhCCHHHHHHHHhhCCC-----CChhhHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHh
Q 048364 51 VYVATSLLHEY-VVTSFGFARKLFDELPE-----RNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLN 124 (400)
Q Consensus 51 ~~~~~~l~~~~-~~g~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 124 (400)
+.+|-..+..+ ++|++...+..|+.... .-...|...+......+-++-++.++++-..-++..-+--+..+++
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAK 181 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34566666677 78888888888877653 2345688888888889999999999999887777777888899999
Q ss_pred cCCcchHHHHHHHHHhcCC-----CCCCHHHHHHHHHHhhcccchhh-hhhhhhhhHHHhccccchHHHHHHHHHHHHhc
Q 048364 125 AGAYDPGLKLFREMISNEG-----LTPDQMTIGAVLSGCSHLGSVGL-LMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198 (400)
Q Consensus 125 ~g~~~~a~~~~~~m~~~~~-----~~p~~~~~~~ll~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (400)
.+++++|.+.+...+.+.. -+.+...|..+-...++..+.-. .-+..+++.....-...-...|++|.+.|.+.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 9999999999988873211 12333455555555544443322 00222333322222223356889999999999
Q ss_pred CCHHHHHHHHHhccCC--CcccHHHHHHHHHh----------------CCC------hhhHHHHHHHHHHCCC-------
Q 048364 199 GFLKYALMVFELMEER--NVISWTALICGSAH----------------RGY------SEDALSLFEMMQATGV------- 247 (400)
Q Consensus 199 g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~----------------~~~------~~~a~~~~~~m~~~~~------- 247 (400)
|++++|..+|++.... .+.-|..+.++|+. .|+ ++-.+.-|+.+...+.
T Consensus 262 g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl 341 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL 341 (835)
T ss_pred hhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 9999999999887752 23333333333322 111 1222333333333210
Q ss_pred ---CC-CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC------hhhHHHHHHHHHhcCChHHHHHHHHhccCCc
Q 048364 248 ---KP-NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR------IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEP 317 (400)
Q Consensus 248 ---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p 317 (400)
.| +..+|..-+. ...|+..+-...|.++.+ .+.|. ...|..+.+.|-..|+++.|..+|++.-..|
T Consensus 342 LRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~--~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVK--TVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP 417 (835)
T ss_pred HhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHH--ccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC
Confidence 11 2222322222 234667777778877775 44442 2457788888889999999999999881111
Q ss_pred ------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----------------CCCchHHHHHHHHhhcccchHHHH
Q 048364 318 ------NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP----------------ENDGGVFTLICDLYTMNEKWEGAE 375 (400)
Q Consensus 318 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------------~~~~~~~~~l~~~~~~~g~~~~a~ 375 (400)
=..+|..-...=.++.+++.|.++.+++.....+ ..+...|...+..-...|-++...
T Consensus 418 y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk 497 (835)
T KOG2047|consen 418 YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTK 497 (835)
T ss_pred ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHH
Confidence 1235555556666788888898888887654311 012335555566666778888888
Q ss_pred HHHHHHhcccc
Q 048364 376 RVRKLMLNQNV 386 (400)
Q Consensus 376 ~~~~~m~~~~~ 386 (400)
.+++++.+..+
T Consensus 498 ~vYdriidLri 508 (835)
T KOG2047|consen 498 AVYDRIIDLRI 508 (835)
T ss_pred HHHHHHHHHhc
Confidence 88888887665
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.4e-06 Score=75.95 Aligned_cols=98 Identities=13% Similarity=0.050 Sum_probs=66.9
Q ss_pred HHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHcCCChHH
Q 048364 24 KSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE--RN-AVTWNTMIKGYSKSGNVCE 99 (400)
Q Consensus 24 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~ 99 (400)
.+....|+++.|...|...+...+. |...|..-..++ ..|++++|++--.+-.+ |+ ...|+....++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 3455678888888888887776544 777777777788 88888888776655543 33 3467888888888888888
Q ss_pred HHHHHhhCCCC---ChhhHHHHHHHH
Q 048364 100 ARDFFERMPLR---NVASWSAMIAAY 122 (400)
Q Consensus 100 a~~~~~~~~~~---~~~~~~~l~~~~ 122 (400)
|+..|.+-.+. |...++-+..++
T Consensus 89 A~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 89 AILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 88888775422 334444444443
No 94
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.85 E-value=2.7e-07 Score=76.34 Aligned_cols=184 Identities=9% Similarity=-0.015 Sum_probs=122.4
Q ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CC-c---ccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCH--HH
Q 048364 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEE--RN-V---ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE--MT 253 (400)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~ 253 (400)
+.....+..++..+...|+++.|...|+++.+ |+ . .++..+..++...|++++|...++++.+....... .+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 34566777788888888999999888887765 32 1 35566778888888899999988888775322111 23
Q ss_pred HHHHHHHHHhc--------CChhhHHHHHHHhhhhcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHH
Q 048364 254 FTGVLTACVHT--------GLVDEGRKYFKMIDEEYDLEPRI-QHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS 324 (400)
Q Consensus 254 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~ 324 (400)
+..+..++.+. |+.++|.+.++.+.+. .|+. ..+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 44445555543 6677788888887743 2332 222211111 0000000 001124
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC--CCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 325 FLAACKEHKQFDMAERVIKQALRMVKPE--NDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 325 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
+...+.+.|++++|...++++++.. |. ..+..+..++.++...|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENY-PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHC-CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5667889999999999999999886 51 23578899999999999999999998887653
No 95
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=3e-06 Score=67.53 Aligned_cols=247 Identities=16% Similarity=0.069 Sum_probs=164.6
Q ss_pred HHcCCChHHHHHHHhhCC-C-CChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhh
Q 048364 91 YSKSGNVCEARDFFERMP-L-RNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLM 168 (400)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~ 168 (400)
+.-.|++..++..-.... . .++..-..+-++|...|++.....-.. .+-.|....+..+......-++.+..
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~-----~~~~~~lqAvr~~a~~~~~e~~~~~~- 91 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIK-----EGKATPLQAVRLLAEYLELESNKKSI- 91 (299)
T ss_pred HHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccccc-----cccCChHHHHHHHHHHhhCcchhHHH-
Confidence 444567776666555433 2 234444456677777777765544332 22244444444444444334433331
Q ss_pred hhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCC
Q 048364 169 GKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248 (400)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 248 (400)
..++.+++.......+......-...|+..|++++|.+...... +....-.=...+.+..+.+-|...+++|.+..
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id-- 167 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQID-- 167 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--
Confidence 44555566655555554555555667899999999999988843 33333333456678888999999999998752
Q ss_pred CCHHHHHHHHHHHHh----cCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--cCCccHHHH
Q 048364 249 PNEMTFTGVLTACVH----TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--RLEPNVIIW 322 (400)
Q Consensus 249 p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~p~~~~~ 322 (400)
+..|.+.|..++.+ .+.+.+|.-+|+++.. ..+|++.+.+....++...|++++|..++++. ....+..+.
T Consensus 168 -ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 168 -EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred -hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 66778877777665 4578999999999985 56889999999999999999999999999998 434466677
Q ss_pred HHHHHHHHhcCCHHH-HHHHHHHHHHcCCC
Q 048364 323 GSFLAACKEHKQFDM-AERVIKQALRMVKP 351 (400)
Q Consensus 323 ~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~ 351 (400)
..++.+-...|...+ ..+.+.+..... |
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~-p 273 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKLSH-P 273 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcC-C
Confidence 777776666776544 456777776666 5
No 96
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.82 E-value=3.2e-05 Score=70.75 Aligned_cols=93 Identities=18% Similarity=0.131 Sum_probs=70.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcc
Q 048364 291 GCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368 (400)
Q Consensus 291 ~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 368 (400)
......+.+.+..++|...+.+. ++.| ....|......+...|+.++|.+.|......+ | .++.....++.++.+.
T Consensus 654 llaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P-~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 654 LLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-P-DHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-C-CCcHHHHHHHHHHHHh
Confidence 34445566667777777666666 4444 44566666677788899999999999999999 8 8899999999999999
Q ss_pred cchHHHHH--HHHHHhccc
Q 048364 369 EKWEGAER--VRKLMLNQN 385 (400)
Q Consensus 369 g~~~~a~~--~~~~m~~~~ 385 (400)
|+..-|.. ++..+.+.+
T Consensus 732 G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred CCcchHHHHHHHHHHHhhC
Confidence 98777777 777776643
No 97
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.82 E-value=1.1e-05 Score=66.67 Aligned_cols=295 Identities=11% Similarity=0.010 Sum_probs=203.9
Q ss_pred CchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHH---HHH
Q 048364 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTM---IKG 90 (400)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l---~~~ 90 (400)
+..-..-+-+.+...|.+..|+.-|-..++..+..-..+|.. ...| ..|+-..|+.-+....+..+..+.+- ...
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrR-aT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRR-ATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHH-HHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 344455566667777888888888877766432222222322 3345 88888888888888775444333333 346
Q ss_pred HHcCCChHHHHHHHhhCCCCCh------hh----------H--HHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHH
Q 048364 91 YSKSGNVCEARDFFERMPLRNV------AS----------W--SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIG 152 (400)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~~~~------~~----------~--~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 152 (400)
+.+.|.+++|..-|+.+...++ .+ | ...+..+...|+...|+.....++ + -.+.|...+.
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~ll-E-i~~Wda~l~~ 193 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLL-E-IQPWDASLRQ 193 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHH-h-cCcchhHHHH
Confidence 8899999999999998863221 11 1 223445677899999999999998 2 3356888888
Q ss_pred HHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCccc------HHHH----
Q 048364 153 AVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVIS------WTAL---- 222 (400)
Q Consensus 153 ~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~l---- 222 (400)
.-..+|...|++.. |..-+..+.+..-. +...+..+...+...|+.+.++...++..+-|+.. |..+
T Consensus 194 ~Rakc~i~~~e~k~--AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKK--AIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHHhcCcHHH--HHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHH
Confidence 89999999999887 66655555555433 44555567778889999999999998888743321 2211
Q ss_pred -----HHHHHhCCChhhHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHH
Q 048364 223 -----ICGSAHRGYSEDALSLFEMMQATGVKPNEMT---FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCM 293 (400)
Q Consensus 223 -----~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 293 (400)
+......++|.++++-.+...+........+ +..+-+++...+++.+|++.-.+.. .+.| |+.++.--
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~~dv~~l~dR 347 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDPDDVQVLCDR 347 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---hcCchHHHHHHHH
Confidence 2234567788888888888777643322333 3455566777899999999998888 4455 48888888
Q ss_pred HHHHHhcCChHHHHHHHHhc-cCCcc
Q 048364 294 VDLFGKAGFLEEAYEVIRTM-RLEPN 318 (400)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~-~~~p~ 318 (400)
..+|.-...++.|..-|+.. ...++
T Consensus 348 AeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 348 AEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999988 54454
No 98
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.81 E-value=3e-07 Score=73.08 Aligned_cols=148 Identities=11% Similarity=0.064 Sum_probs=96.1
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 048364 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR 271 (400)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 271 (400)
+-.|...|+++.+....+.+..+. . .+...++.++++..++...+.. +.+...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 455777888777655543333221 0 1223566677777776666653 346677777777777788888888
Q ss_pred HHHHHhhhhcCCCCChhhHHHHHHHH-HhcCC--hHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048364 272 KYFKMIDEEYDLEPRIQHYGCMVDLF-GKAGF--LEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQAL 346 (400)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 346 (400)
..|++..+ -.+.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+.+.|++++|...|+++.
T Consensus 94 ~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88877773 2233556666666653 56566 47777777777 4445 55567777777777888888888888887
Q ss_pred HcCCC
Q 048364 347 RMVKP 351 (400)
Q Consensus 347 ~~~~~ 351 (400)
+.. |
T Consensus 172 ~l~-~ 175 (198)
T PRK10370 172 DLN-S 175 (198)
T ss_pred hhC-C
Confidence 777 5
No 99
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.80 E-value=1.6e-06 Score=71.70 Aligned_cols=180 Identities=12% Similarity=-0.028 Sum_probs=125.0
Q ss_pred CHHHHHHHHHHhhcccchhhhhhhhhhhHHHhcccc-c-hHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CC-cc---c
Q 048364 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE-L-NEQIATILVDMYAKCGFLKYALMVFELMEE--RN-VI---S 218 (400)
Q Consensus 147 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~---~ 218 (400)
....+......+...|+++. |...++.+.+.... | ....+..+..+|...|++++|...++++.+ |+ .. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~--A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTE--AIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 44567788888999999999 99999988776432 1 234677888999999999999999999875 32 22 3
Q ss_pred HHHHHHHHHhC--------CChhhHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhh
Q 048364 219 WTALICGSAHR--------GYSEDALSLFEMMQATGVKPNE-MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQH 289 (400)
Q Consensus 219 ~~~l~~~~~~~--------~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 289 (400)
+..+..++... |++++|.+.++++... .|+. .....+... .. . ..... ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~------~~~~~---------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---L------RNRLA---------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---H------HHHHH---------HH
Confidence 45555556554 7889999999999876 3443 222222111 00 0 00000 01
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc-cCCc----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 290 YGCMVDLFGKAGFLEEAYEVIRTM-RLEP----NVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
...+...|.+.|++++|...+++. ...| ....+..+..++...|++++|..+++.+....
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 124667788999999999999887 3223 34578888899999999999999888887665
No 100
>PF12854 PPR_1: PPR repeat
Probab=98.76 E-value=7e-09 Score=55.83 Aligned_cols=33 Identities=6% Similarity=0.146 Sum_probs=28.1
Q ss_pred CCCCCCchhHHHHHHHhcccchhHHHHHHHHHH
Q 048364 10 QSVPSDSFSILHILKSCTHFNNLTVIHHLHSHI 42 (400)
Q Consensus 10 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 42 (400)
+|++||..||+.||.++++.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 478888888888888888888888888888877
No 101
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.76 E-value=2.5e-06 Score=81.33 Aligned_cols=233 Identities=13% Similarity=0.079 Sum_probs=130.2
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHhhCC--CC-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 048364 80 NAVTWNTMIKGYSKSGNVCEARDFFERMP--LR-NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLS 156 (400)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~ 156 (400)
+...+..|+..+...+++++|.++.+... .| ....|-.+...+.+.++.+++..+ .+. +..+...-+..+-.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l---~~~~~~~~~~~ve~ 104 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI---DSFSQNLKWAIVEH 104 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh---hhcccccchhHHHH
Confidence 45567777777777777777777777544 23 233444444466677776666655 333 22222222222222
Q ss_pred HhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChh
Q 048364 157 GCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSE 233 (400)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 233 (400)
.|...++... +...+..+..+|-+.|+.++|..+++++.+ .|+.+.|.+...|... +.+
T Consensus 105 ~~~~i~~~~~-----------------~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 105 ICDKILLYGE-----------------NKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred HHHHHHhhhh-----------------hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHH
Confidence 2222222222 334556677777777777777777777765 3556677777777777 777
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc
Q 048364 234 DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 234 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
+|..++.+.... +...+++..+..+|..+.. ..+.+...+-.+.+..... .
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~------------~ 217 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGH------------R 217 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhh------------h
Confidence 777777665543 4445566666666666663 1122222222222211111 1
Q ss_pred cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhh
Q 048364 314 RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366 (400)
Q Consensus 314 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 366 (400)
+...-+.++--+...|...++++++..+++.+++.. | .+..+...++.+|.
T Consensus 218 ~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~-~n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-N-KNNKAREELIRFYK 268 (906)
T ss_pred ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-C-cchhhHHHHHHHHH
Confidence 122223344445556666677777777777777777 6 56666777776665
No 102
>PF12854 PPR_1: PPR repeat
Probab=98.75 E-value=1.7e-08 Score=54.34 Aligned_cols=32 Identities=25% Similarity=0.550 Sum_probs=15.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHh
Q 048364 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI 277 (400)
Q Consensus 246 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 277 (400)
|+.||..||+++|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
No 103
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=1.9e-05 Score=72.67 Aligned_cols=172 Identities=13% Similarity=0.123 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048364 184 NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263 (400)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 263 (400)
+...|..-....-..|+.+.|+.+|.... -|.+++...|-.|+.++|-.+-++ .| |......+.+.|..
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~VrI~C~qGk~~kAa~iA~e---sg---d~AAcYhlaR~YEn 979 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVRIKCIQGKTDKAARIAEE---SG---DKAACYHLARMYEN 979 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhheeeEeeccCchHHHHHHHh---cc---cHHHHHHHHHHhhh
Confidence 33445555555566788888888887654 355666667777777777776543 22 45555567777778
Q ss_pred cCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHH---------------HhcCChHHHHHHHHhccCCccHHHHHHHHHH
Q 048364 264 TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF---------------GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAA 328 (400)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---------------~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~ 328 (400)
.|++.+|..+|.+... +.+.|+.| ....+.-.|-.+|++.|.. +...+..
T Consensus 980 ~g~v~~Av~FfTrAqa----------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~-----~~~AVmL 1044 (1416)
T KOG3617|consen 980 DGDVVKAVKFFTRAQA----------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGY-----AHKAVML 1044 (1416)
T ss_pred hHHHHHHHHHHHHHHH----------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchh-----hhHHHHH
Confidence 8888888777766542 11222211 1222333445555555321 1222334
Q ss_pred HHhcCCHHHHHHHHH---------HH-HHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 329 CKEHKQFDMAERVIK---------QA-LRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 329 ~~~~~~~~~a~~~~~---------~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
|-+.|.+.+|+++-= -+ .+.. +..|+.....-...++...+|++|..++-...
T Consensus 1045 YHkAGm~~kALelAF~tqQf~aL~lIa~DLd-~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1045 YHKAGMIGKALELAFRTQQFSALDLIAKDLD-AGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHhhcchHHHHHHHHhhcccHHHHHHHHhcC-CCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 555555555544321 11 1233 55688888888888999999999888766543
No 104
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.73 E-value=3.4e-06 Score=67.16 Aligned_cols=155 Identities=13% Similarity=0.126 Sum_probs=110.2
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHh
Q 048364 220 TALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299 (400)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 299 (400)
..+-..+...|+-+....+....... ..-|.......+....+.|++..|...+++... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 44556666777777777776664433 122444555577777788888888888888774 556677888888888888
Q ss_pred cCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHH
Q 048364 300 AGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERV 377 (400)
Q Consensus 300 ~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 377 (400)
.|+++.|..-|.+. .+.| +...++.+.-.+.-.|+.+.|..++....... + .+..+-..+..+....|++++|..+
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~-ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-A-ADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-C-CchHHHHHHHHHHhhcCChHHHHhh
Confidence 88888888777776 4445 34566777777777888888888888887776 5 6777777888888888888887765
Q ss_pred HH
Q 048364 378 RK 379 (400)
Q Consensus 378 ~~ 379 (400)
..
T Consensus 225 ~~ 226 (257)
T COG5010 225 AV 226 (257)
T ss_pred cc
Confidence 43
No 105
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.72 E-value=5.7e-06 Score=80.07 Aligned_cols=224 Identities=11% Similarity=0.077 Sum_probs=152.5
Q ss_pred HHHHHHHHHhhcccchhhhhhhhhhhHHHhcc-c---cchHHHHHHHHHHHHhcCCHHHHHHHHHhccC-CC-cccHHHH
Q 048364 149 MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE-W---ELNEQIATILVDMYAKCGFLKYALMVFELMEE-RN-VISWTAL 222 (400)
Q Consensus 149 ~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~-~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~l 222 (400)
..|-..+.-....++.+. |.++.+++++.= + +--..+|.++++.-..-|.-+...++|+++.+ -| ...|..|
T Consensus 1459 i~WI~YMaf~LelsEiek--AR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEK--ARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred hHHHHHHHHHhhhhhhHH--HHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 445555666666666666 666666555421 1 11234566666666666777788888888876 23 4568888
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCC
Q 048364 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302 (400)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 302 (400)
...|.+.+++++|.++|+.|.+. ..-....|...+..+.+.++-+.|..++.++.+...-.-........++.-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 88899999999999999998775 22356778888888888888888888888888531111134445555666678899
Q ss_pred hHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhh-cccchHHHH
Q 048364 303 LEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT-MNEKWEGAE 375 (400)
Q Consensus 303 ~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~ 375 (400)
.+++..+|+.. .-.| -...|+..++.-.++|+.+.+..+|++++.++.+......+.-....|. ..|+-+.+.
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 99998888887 2233 5567888888888999999999999999988864344444444444444 346544443
No 106
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.72 E-value=3.9e-06 Score=66.77 Aligned_cols=148 Identities=10% Similarity=0.078 Sum_probs=111.0
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCC
Q 048364 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302 (400)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 302 (400)
+..|...|+++.+....+.+.. |. . .+...++.+++...++...+ .-+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 3568888888876544432221 11 0 12235666777777777774 335677889999999999999
Q ss_pred hHHHHHHHHhc-cCCc-cHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHH
Q 048364 303 LEEAYEVIRTM-RLEP-NVIIWGSFLAAC-KEHKQ--FDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERV 377 (400)
Q Consensus 303 ~~~a~~~~~~~-~~~p-~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 377 (400)
+++|...|++. ...| +...+..+..++ ...|+ .++|.+++++..+.+ | .+..++..++..+...|++++|+..
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P-~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-A-NEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-C-CChhHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999988 5566 556777777764 66676 589999999999999 8 8889999999999999999999999
Q ss_pred HHHHhcccc
Q 048364 378 RKLMLNQNV 386 (400)
Q Consensus 378 ~~~m~~~~~ 386 (400)
++++.+..-
T Consensus 167 ~~~aL~l~~ 175 (198)
T PRK10370 167 WQKVLDLNS 175 (198)
T ss_pred HHHHHhhCC
Confidence 999887544
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.72 E-value=2.4e-06 Score=82.50 Aligned_cols=200 Identities=11% Similarity=0.098 Sum_probs=167.9
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhccCC--------CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHH
Q 048364 184 NEQIATILVDMYAKCGFLKYALMVFELMEER--------NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT 255 (400)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 255 (400)
+...|-..|......++.++|++++++.... -...|.++++.-...|.-+...++|+++.+.. . .-..|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHHHH
Confidence 4566777888888999999999999988751 23467788877777888888999999988752 1 235678
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc---HHHHHHHHHHHHh
Q 048364 256 GVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN---VIIWGSFLAACKE 331 (400)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~---~~~~~~l~~~~~~ 331 (400)
.|...|.+.+..++|.++++.|.++++ .....|...+..+.++++-+.|..++.+. ..-|. .....-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 899999999999999999999998665 67788999999999999999999999988 44554 3345556666778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhccccccc
Q 048364 332 HKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKA 389 (400)
Q Consensus 332 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 389 (400)
.|+.+.+..+|+..+... | .....|+..++.-.++|+.+.++.+|++.+..++.|.
T Consensus 1613 ~GDaeRGRtlfEgll~ay-P-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-P-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-c-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 999999999999999998 8 8889999999999999999999999999999888653
No 108
>PLN02789 farnesyltranstransferase
Probab=98.72 E-value=7.2e-06 Score=70.15 Aligned_cols=223 Identities=16% Similarity=0.076 Sum_probs=130.9
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHH-HHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHH
Q 048364 114 SWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMT-IGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILV 192 (400)
Q Consensus 114 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 192 (400)
++..+-..+...++.++|+.++.+++ .+.|+..+ |+..-
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI---~lnP~~ytaW~~R~------------------------------------- 78 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVI---RLNPGNYTVWHFRR------------------------------------- 78 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHH---HHCchhHHHHHHHH-------------------------------------
Confidence 34444455666778888888888887 34555432 22211
Q ss_pred HHHHhcC-CHHHHHHHHHhccCC---CcccHHHHHHHHHhCCCh--hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048364 193 DMYAKCG-FLKYALMVFELMEER---NVISWTALICGSAHRGYS--EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266 (400)
Q Consensus 193 ~~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~--~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 266 (400)
.++...| ++++++..++++.+. +..+|+.....+.+.|+. ++++..++++.+...+ |..+|+....++...|+
T Consensus 79 ~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~ 157 (320)
T PLN02789 79 LCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGG 157 (320)
T ss_pred HHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhh
Confidence 1222223 356666666665542 333444443334444442 5567777777665432 56667777777777777
Q ss_pred hhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhc---CCh----HHHHHHHHhc-cCCc-cHHHHHHHHHHHHh----cC
Q 048364 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA---GFL----EEAYEVIRTM-RLEP-NVIIWGSFLAACKE----HK 333 (400)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~----~~ 333 (400)
++++++.++++.+. + +.+...|+.....+.+. |.. +++.++..++ ...| |...|+.+...+.. .+
T Consensus 158 ~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~ 235 (320)
T PLN02789 158 WEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALV 235 (320)
T ss_pred HHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccc
Confidence 77777777777742 2 33455566555554443 222 3455555444 4455 45566666666665 23
Q ss_pred CHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhccc------------------chHHHHHHHHHH
Q 048364 334 QFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNE------------------KWEGAERVRKLM 381 (400)
Q Consensus 334 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m 381 (400)
+..+|...+.+....+ | .++.+...|+..|+... ..++|.++++.+
T Consensus 236 ~~~~~~~~~~~~~~~~-~-~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 236 SDPEVSSVCLEVLSKD-S-NHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred cchhHHHHHHHhhccc-C-CcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 4566888888877766 6 67778888888887532 236678888777
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.72 E-value=1e-06 Score=66.24 Aligned_cols=108 Identities=9% Similarity=-0.097 Sum_probs=71.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHh
Q 048364 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKE 331 (400)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~ 331 (400)
+.....++...|++++|...|+.+.. --+.+...+..+..++.+.|++++|...|+.. ...| +...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 44455666677777777777777763 22335666777777777777777777777777 4444 55566777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHh
Q 048364 332 HKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365 (400)
Q Consensus 332 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 365 (400)
.|++++|...+++.++.. | .++..+.....+.
T Consensus 105 ~g~~~eAi~~~~~Al~~~-p-~~~~~~~~~~~~~ 136 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMS-Y-ADASWSEIRQNAQ 136 (144)
T ss_pred cCCHHHHHHHHHHHHHhC-C-CChHHHHHHHHHH
Confidence 777777777777777777 6 5666665544443
No 110
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.70 E-value=8.9e-05 Score=74.35 Aligned_cols=292 Identities=12% Similarity=0.018 Sum_probs=185.0
Q ss_pred HHHHcCCChHHHHHHHhhCCC----CChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCC-----CCCHH--HHHHHHHH
Q 048364 89 KGYSKSGNVCEARDFFERMPL----RNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL-----TPDQM--TIGAVLSG 157 (400)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-----~p~~~--~~~~ll~~ 157 (400)
......|+++.+...++.+.. .+..........+...|++++|..++........- .|... ....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 345567888888888877741 12333334455567789999999999887522111 11111 12223344
Q ss_pred hhcccchhhhhhhhhhhHHHhccccch----HHHHHHHHHHHHhcCCHHHHHHHHHhccC-------CC--cccHHHHHH
Q 048364 158 CSHLGSVGLLMGKSAHGFIVKNEWELN----EQIATILVDMYAKCGFLKYALMVFELMEE-------RN--VISWTALIC 224 (400)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~--~~~~~~l~~ 224 (400)
+...|+++. +...++...+.....+ ....+.+...+...|+++.|...+.+... +. ..++..+..
T Consensus 462 ~~~~g~~~~--A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 462 AINDGDPEE--AERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHhCCCHHH--HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 567888888 8888887765321111 23445667778889999999999887763 11 124455667
Q ss_pred HHHhCCChhhHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcC-CCC--ChhhHHHHH
Q 048364 225 GSAHRGYSEDALSLFEMMQAT----GVK--P-NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD-LEP--RIQHYGCMV 294 (400)
Q Consensus 225 ~~~~~~~~~~a~~~~~~m~~~----~~~--p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~~l~ 294 (400)
.+...|++++|...+++.... +.. + ....+..+...+...|++++|...++....... ..+ ....+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 788899999999998876552 221 1 223344555667778999999999887753211 112 233455566
Q ss_pred HHHHhcCChHHHHHHHHhc-cC---CccHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCch----HHHHH
Q 048364 295 DLFGKAGFLEEAYEVIRTM-RL---EPNVIIW-----GSFLAACKEHKQFDMAERVIKQALRMVKPENDGG----VFTLI 361 (400)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~-~~---~p~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l 361 (400)
..+...|+++.|...+++. .+ ......+ ...+..+...|+.+.|...+....... + .... ....+
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~-~-~~~~~~~~~~~~~ 697 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE-F-ANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC-C-ccchhHHHHHHHH
Confidence 7788999999999988876 11 1111111 112244556889999999987765433 2 1111 14567
Q ss_pred HHHhhcccchHHHHHHHHHHhcc
Q 048364 362 CDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 362 ~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
..++...|++++|...+++....
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 78889999999999999988754
No 111
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.68 E-value=7.7e-06 Score=74.33 Aligned_cols=166 Identities=16% Similarity=0.116 Sum_probs=80.3
Q ss_pred HhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHH
Q 048364 157 GCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL 236 (400)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 236 (400)
+......|.. |..+++-+.+... ...-|..+.+.|...|+++.|.++|-+. ..++-.|..|.+.|+|++|.
T Consensus 741 aai~akew~k--ai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 741 AAIGAKEWKK--AISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHhhhhhhhh--hHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHHH
Confidence 3344444555 5555544443321 1122344555666666666666666443 23444556666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCC
Q 048364 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLE 316 (400)
Q Consensus 237 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 316 (400)
++-.+. .|.......|.+-..-+-+.|++.+|+++|-.+. .|+. .|..|-+.|..++.+++..+..-.
T Consensus 812 kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 812 KLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChh
Confidence 654433 2223334444444444555666666665554332 2332 345555666666655555554101
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048364 317 PNVIIWGSFLAACKEHKQFDMAERVIK 343 (400)
Q Consensus 317 p~~~~~~~l~~~~~~~~~~~~a~~~~~ 343 (400)
.-..|...+..-+-..|+...|+..|-
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 112233444444555555555554443
No 112
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.67 E-value=5.2e-06 Score=78.27 Aligned_cols=131 Identities=11% Similarity=0.109 Sum_probs=81.3
Q ss_pred CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHH
Q 048364 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN-EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293 (400)
Q Consensus 215 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 293 (400)
++..+..|.......|.+++|..+++...+. .|+ ......+..++.+.+++++|....++... .-+.+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 3555666666666677777777777666664 343 34455566666666777777766666663 223344555566
Q ss_pred HHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 294 VDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
..++...|++++|..+|++. .-.| +..++..+..++...|+.++|...|+++.+..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 66666677777777777666 2233 34566666666666677777777777766665
No 113
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.67 E-value=5e-07 Score=67.98 Aligned_cols=107 Identities=10% Similarity=-0.048 Sum_probs=91.6
Q ss_pred HHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048364 271 RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRM 348 (400)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (400)
+.++++.. ...|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...|+++...
T Consensus 13 ~~~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34555555 23444 3556788899999999999999998 5566 6778899999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 349 VKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 349 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
+ | .++.++..++.++...|++++|+..++...+.
T Consensus 88 ~-p-~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 88 D-A-SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred C-C-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9 8 99999999999999999999999999998764
No 114
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=0.00018 Score=68.11 Aligned_cols=242 Identities=15% Similarity=0.094 Sum_probs=129.4
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHH
Q 048364 112 VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191 (400)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (400)
+..|..+..+-.+.|...+|++-|-+.- |+..|.-++..+.+.|.+++ -.+++...++..-+|.+. +.|
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyikad-------Dps~y~eVi~~a~~~~~~ed--Lv~yL~MaRkk~~E~~id--~eL 1172 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKAD-------DPSNYLEVIDVASRTGKYED--LVKYLLMARKKVREPYID--SEL 1172 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhcC-------CcHHHHHHHHHHHhcCcHHH--HHHHHHHHHHhhcCccch--HHH
Confidence 4567888888888888888877765442 45578888888888888888 777777777766665544 467
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHC--------------------CCCCCH
Q 048364 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT--------------------GVKPNE 251 (400)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--------------------~~~p~~ 251 (400)
+-+|++.++..+-++++. .||......+..-|...|.++.|.-+|...... .-..+.
T Consensus 1173 i~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ 1249 (1666)
T KOG0985|consen 1173 IFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANST 1249 (1666)
T ss_pred HHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccch
Confidence 788888888777665542 244444444445555555555444444321100 001123
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc-HHHHHHHHHHH
Q 048364 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN-VIIWGSFLAAC 329 (400)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~-~~~~~~l~~~~ 329 (400)
.||.-+-.+|...+.+.-| +|. ..++-....-..-++..|-..|-+++...+++.. |++.- ...|+.|.-.|
T Consensus 1250 ktWK~VcfaCvd~~EFrlA-----QiC-GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLY 1323 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLA-----QIC-GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILY 1323 (1666)
T ss_pred hHHHHHHHHHhchhhhhHH-----Hhc-CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Confidence 3444444444433333222 111 0111122233445566666666666666666554 44332 22444444444
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHH
Q 048364 330 KEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLM 381 (400)
Q Consensus 330 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 381 (400)
.+- ++++..+.++-....-.. --+++++....-|.+..-++.+-
T Consensus 1324 sky-kp~km~EHl~LFwsRvNi-------pKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1324 SKY-KPEKMMEHLKLFWSRVNI-------PKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred Hhc-CHHHHHHHHHHHHHhcch-------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 443 455555555444433211 23445555555666655555443
No 115
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.66 E-value=4.2e-06 Score=75.97 Aligned_cols=165 Identities=15% Similarity=0.137 Sum_probs=121.0
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCCcc--cHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh
Q 048364 192 VDMYAKCGFLKYALMVFELMEERNVI--SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269 (400)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 269 (400)
+.+......|.+|..+++.+...+.. -|..+...|...|+++.|.++|.+.- .++-.|..|.+.|+|+.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 45556778888899998888765443 47778899999999999999986531 25567788999999999
Q ss_pred HHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
|.++-++.. |.......|..-..-+-+.|++.+|.++|-.++ .|+. .|..|-+.|..+..+++.++-...
T Consensus 810 a~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~-~p~~-----aiqmydk~~~~ddmirlv~k~h~d- 879 (1636)
T KOG3616|consen 810 AFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD- 879 (1636)
T ss_pred HHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-CchH-----HHHHHHhhCcchHHHHHHHHhChh-
Confidence 988877665 555667777777777889999999999998887 5654 467888899888888877654321
Q ss_pred CCCCCchHHHHHHHHhhcccchHHHHHHH
Q 048364 350 KPENDGGVFTLICDLYTMNEKWEGAERVR 378 (400)
Q Consensus 350 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 378 (400)
.-..|...+..-|...|+...|.+-|
T Consensus 880 ---~l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 880 ---HLHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred ---hhhHHHHHHHHHHHhccChhHHHHHH
Confidence 23345555555566666665555444
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=1.6e-06 Score=78.38 Aligned_cols=211 Identities=12% Similarity=0.118 Sum_probs=98.3
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHh
Q 048364 118 MIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK 197 (400)
Q Consensus 118 l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (400)
+...+.+.|-...|+.+|++.. .+..++-+|...|+.++ |..+...-.+ -+|++..|..+.+..-.
T Consensus 404 laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~k--aeei~~q~le--k~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGK--AEEINRQELE--KDPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccch--HHHHHHHHhc--CCCcchhHHHhhhhccC
Confidence 4444555555555555555443 23344445555554444 4444444333 24455555555554444
Q ss_pred cCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHh
Q 048364 198 CGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI 277 (400)
Q Consensus 198 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 277 (400)
..-+++|.++++..... +-..+.....+.++++++.+.|+.-.+.. +....+|-.+..+..+.++++.|.+.|...
T Consensus 470 ~s~yEkawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred hHHHHHHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 44455555555443321 11111111222455555555555443331 113344444555555555555555555555
Q ss_pred hhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048364 278 DEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RL-EPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348 (400)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (400)
.. .-+.+...||.+-.+|.+.|+-.+|...+.+. .. .-+...|...+....+.|.+++|.+.+.++.+.
T Consensus 546 vt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 546 VT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 42 22223445555555555555555555555555 11 122234444444555555555555555555543
No 117
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=3e-06 Score=74.71 Aligned_cols=247 Identities=12% Similarity=0.094 Sum_probs=165.8
Q ss_pred HHHhcCCcchHHHHHHHHHhcCCCCC-CHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcC
Q 048364 121 AYLNAGAYDPGLKLFREMISNEGLTP-DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG 199 (400)
Q Consensus 121 ~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 199 (400)
-+.+.|++.+|.-.|+..+++ .| +...|..|-......++-.. |...+....+.. +-+..+.-.|.-.|...|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkq---dP~haeAW~~LG~~qaENE~E~~--ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQ---DPQHAEAWQKLGITQAENENEQN--AISALRRCLELD-PTNLEALMALAVSYTNEG 367 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhh---ChHHHHHHHHhhhHhhhccchHH--HHHHHHHHHhcC-CccHHHHHHHHHHHhhhh
Confidence 355677777777777777622 33 34566666666666665555 666666665554 225566677778888888
Q ss_pred CHHHHHHHHHhccCCC-cccHHHHH---------HHHHhCCChhhHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChh
Q 048364 200 FLKYALMVFELMEERN-VISWTALI---------CGSAHRGYSEDALSLFEMMQA-TGVKPNEMTFTGVLTACVHTGLVD 268 (400)
Q Consensus 200 ~~~~A~~~~~~~~~~~-~~~~~~l~---------~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~~~~~ 268 (400)
.-..|.+.++.-.... ...|.... ..+..........++|-++.. .+..+|......|.-.|--.|+++
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 8888888887654210 00000000 112222233455566655544 444467777777777788899999
Q ss_pred hHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 048364 269 EGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVI-IWGSFLAACKEHKQFDMAERVIKQA 345 (400)
Q Consensus 269 ~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~ 345 (400)
+|...|+.++. ++| |..+||.|.-.++...+.++|+..|++. .+.|.-+ ....|.-+|...|.+++|...|-.+
T Consensus 448 raiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 99999999984 355 6788999999999999999999999998 8888643 5666788999999999999999888
Q ss_pred HHcCC--------CCCCchHHHHHHHHhhcccchHHHHH
Q 048364 346 LRMVK--------PENDGGVFTLICDLYTMNEKWEGAER 376 (400)
Q Consensus 346 ~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~a~~ 376 (400)
+...- +..+...|..|=.++.-.++.+.+.+
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 76441 11223566666666666677664443
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.61 E-value=7.6e-06 Score=74.19 Aligned_cols=195 Identities=16% Similarity=0.119 Sum_probs=141.2
Q ss_pred ccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048364 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260 (400)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 260 (400)
.+|-...-..+...+...|-...|..+|+++. .|..++.+|+..|+..+|..+..+..+. +||+..|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhh
Confidence 34555555677778888888888888887754 4566777888888888888887776663 6677777766665
Q ss_pred HHhcC----------------------------ChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHh
Q 048364 261 CVHTG----------------------------LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312 (400)
Q Consensus 261 ~~~~~----------------------------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 312 (400)
..... +++++.+.|+.-.+- .+....+|-.+.-+..+.+++..|.+.|..
T Consensus 467 ~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred ccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 44433 444444444443321 122345666677777788888888888887
Q ss_pred c-cCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcccc
Q 048364 313 M-RLEPN-VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386 (400)
Q Consensus 313 ~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 386 (400)
. ...|| ...||.+-.+|.+.++-.+|...+.++.+.+ . .+...+........+-|.+++|.+.+.++.+...
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~-~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-Y-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-C-CCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 7 55675 4578999999999999999999999998888 5 6778888888888888999999998888876443
No 119
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.56 E-value=0.00012 Score=67.71 Aligned_cols=159 Identities=13% Similarity=0.083 Sum_probs=100.3
Q ss_pred cccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC-CChhhHHHHHHHHHcCCChHHHHHHH
Q 048364 27 THFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE-RNAVTWNTMIKGYSKSGNVCEARDFF 104 (400)
Q Consensus 27 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~ 104 (400)
...|..++|+.+|++.++.. .+=+.| ..|.+++|.++-+.-.+ .-..||.....-+-..++.+.|++.|
T Consensus 811 ieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHH
Confidence 35567777777777665532 233445 77777777777654433 12345666666666778888888887
Q ss_pred hhCCCC-----------------------ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcc
Q 048364 105 ERMPLR-----------------------NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHL 161 (400)
Q Consensus 105 ~~~~~~-----------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~ 161 (400)
++...+ |...|.-.....-..|+.+.|+.+|.... -|-++++..|-.
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~----------D~fs~VrI~C~q 951 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK----------DYFSMVRIKCIQ 951 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh----------hhhhheeeEeec
Confidence 765421 33344444444555677777777777665 355666777777
Q ss_pred cchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048364 162 GSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELME 212 (400)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 212 (400)
|+.++ |.++-++ .| |.....-|...|-..|++.+|..+|-+..
T Consensus 952 Gk~~k--Aa~iA~e---sg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 952 GKTDK--AARIAEE---SG---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred cCchH--HHHHHHh---cc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 77777 5544332 22 55556667888888888888888876654
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.54 E-value=3.8e-05 Score=73.54 Aligned_cols=110 Identities=9% Similarity=0.037 Sum_probs=55.8
Q ss_pred CchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHH-HHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHHHH
Q 048364 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSL-LHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYS 92 (400)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 92 (400)
+...+..|+..+...+++++|.++.+...+. .|+...+-.+ ...+ ..++.+++..+ .++....
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~ 94 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFS 94 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcc
Confidence 3455677777777777777777777755553 2332222111 1133 55554443333 2222222
Q ss_pred cCCChHHHHHHHhhCC--CCChhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 048364 93 KSGNVCEARDFFERMP--LRNVASWSAMIAAYLNAGAYDPGLKLFREMI 139 (400)
Q Consensus 93 ~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 139 (400)
...++.-+..+.+.|. ..+..++..+..+|-+.|+.++|..++++++
T Consensus 95 ~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L 143 (906)
T PRK14720 95 QNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLV 143 (906)
T ss_pred cccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3333322222222222 1133456667777777777777777777776
No 121
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=0.00018 Score=68.09 Aligned_cols=250 Identities=11% Similarity=0.137 Sum_probs=156.6
Q ss_pred CCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCC
Q 048364 64 TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEG 143 (400)
Q Consensus 64 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 143 (400)
+.++.|.+.-++.. .+..|+.+..+-.+.|.+.+|++-|-+.. |+..|.-+++...+.|.|++-.+++...+ +..
T Consensus 1089 ~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyikad--Dps~y~eVi~~a~~~~~~edLv~yL~MaR-kk~ 1163 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKAD--DPSNYLEVIDVASRTGKYEDLVKYLLMAR-KKV 1163 (1666)
T ss_pred hhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhcC--CcHHHHHHHHHHHhcCcHHHHHHHHHHHH-Hhh
Confidence 34444444444433 34579999999999999999999886544 67889999999999999999999987776 555
Q ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC----------
Q 048364 144 LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---------- 213 (400)
Q Consensus 144 ~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------- 213 (400)
-.|... +.++-+|++.++..+ .+.+. ..|+......+.+-+...|.++.|.-+|..+..
T Consensus 1164 ~E~~id--~eLi~AyAkt~rl~e--lE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~ 1232 (1666)
T KOG0985|consen 1164 REPYID--SELIFAYAKTNRLTE--LEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVY 1232 (1666)
T ss_pred cCccch--HHHHHHHHHhchHHH--HHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 566554 467888888888766 33322 234555555555666666666666655543321
Q ss_pred --------------CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhh
Q 048364 214 --------------RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE 279 (400)
Q Consensus 214 --------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (400)
.+..+|..+-.+|...+.+.-| +|-..++.....-..-++.-|...|-+++.+.+++...
T Consensus 1233 LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L- 1306 (1666)
T KOG0985|consen 1233 LGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL- 1306 (1666)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh-
Confidence 1333444444444444333322 23333334455566778888999999999999888776
Q ss_pred hcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHh----ccCC------ccHHHHHHHHHHHHhcCCHHHH
Q 048364 280 EYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRT----MRLE------PNVIIWGSFLAACKEHKQFDMA 338 (400)
Q Consensus 280 ~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~~------p~~~~~~~l~~~~~~~~~~~~a 338 (400)
|+.- ....|+.|.-.|.+-+ +++..+-++- .+++ -....|+.+.-.|.+-..++.|
T Consensus 1307 --GLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1307 --GLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred --chhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 4433 4556777777776643 4444433332 2321 1234566666666665555554
No 122
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.51 E-value=2.4e-05 Score=73.47 Aligned_cols=154 Identities=16% Similarity=0.173 Sum_probs=92.0
Q ss_pred hHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCC-----hhhHHHHHHHH
Q 048364 18 SILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERN-----AVTWNTMIKGY 91 (400)
Q Consensus 18 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~-----~~~~~~l~~~~ 91 (400)
.|..|...|+..-+...|.+.|+.+.+.... +...+......| +..+++.|..+.-...+.+ ...|....-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 3555555555555566666666666553322 444555666666 6677777776643333321 12233344456
Q ss_pred HcCCChHHHHHHHhhCC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHH--Hhhcccchhh
Q 048364 92 SKSGNVCEARDFFERMP---LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLS--GCSHLGSVGL 166 (400)
Q Consensus 92 ~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~--~~~~~~~~~~ 166 (400)
.+.++...|+.-|+... +.|...|..++.+|...|++..|+++|.+.. .+.|+.. |...-. .-+..|++.+
T Consensus 573 Lea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs---~LrP~s~-y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKAS---LLRPLSK-YGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhH---hcCcHhH-HHHHHHHHHHHHhhhHHH
Confidence 66777777777777654 3366778888999999999999999998876 5566642 222222 2345666666
Q ss_pred hhhhhhhhHHHh
Q 048364 167 LMGKSAHGFIVK 178 (400)
Q Consensus 167 ~~a~~~~~~~~~ 178 (400)
+...+..+..
T Consensus 649 --ald~l~~ii~ 658 (1238)
T KOG1127|consen 649 --ALDALGLIIY 658 (1238)
T ss_pred --HHHHHHHHHH
Confidence 5555555443
No 123
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=0.00043 Score=57.91 Aligned_cols=314 Identities=11% Similarity=0.079 Sum_probs=190.7
Q ss_pred HHHHHH-HhCCHHHHHHHHhhCCCC--ChhhHHHHHH-HHHcCCChHHHHHHHhhCC--CC-ChhhHHHHHHHHHhcC--
Q 048364 56 SLLHEY-VVTSFGFARKLFDELPER--NAVTWNTMIK-GYSKSGNVCEARDFFERMP--LR-NVASWSAMIAAYLNAG-- 126 (400)
Q Consensus 56 ~l~~~~-~~g~~~~a~~~~~~~~~~--~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~g-- 126 (400)
++.... ..-.+.+|+.++..+... +-...|..+. +|.+..-++-+.++++.-. -| ++.+-|.......+.-
T Consensus 156 SLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ng 235 (557)
T KOG3785|consen 156 SLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLING 235 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcc
Confidence 344444 556678888888888753 3334444443 3455555665555554432 12 3333343333332221
Q ss_pred ---------------------------------CcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhh
Q 048364 127 ---------------------------------AYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAH 173 (400)
Q Consensus 127 ---------------------------------~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~ 173 (400)
+-+.|++++-.+. .+.|. .-..++--|.+.+++.+ |..+.
T Consensus 236 r~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~---~~IPE--ARlNL~iYyL~q~dVqe--A~~L~ 308 (557)
T KOG3785|consen 236 RTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLM---KHIPE--ARLNLIIYYLNQNDVQE--AISLC 308 (557)
T ss_pred chhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHH---hhChH--hhhhheeeecccccHHH--HHHHH
Confidence 1223333333322 11222 22234445677788766 55544
Q ss_pred hHHHhccccchHHHHHHHHHH-----HHhcCCHHHHHHHHHhccC-----CCcccHHHHHHHHHhCCChhhHHHHHHHHH
Q 048364 174 GFIVKNEWELNEQIATILVDM-----YAKCGFLKYALMVFELMEE-----RNVISWTALICGSAHRGYSEDALSLFEMMQ 243 (400)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 243 (400)
..+.. ..|-..+...+..+ ........-|.+.|+-+-+ .+...-.++.+.+.-..++++++-.+..+.
T Consensus 309 Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~ 386 (557)
T KOG3785|consen 309 KDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE 386 (557)
T ss_pred hhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33221 22333333333222 2222335567777776654 344567788899999999999999999888
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHH-
Q 048364 244 ATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW- 322 (400)
Q Consensus 244 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~- 322 (400)
.-=..-|..-| .+.++.+..|++.+|+++|-.+. ...++.+..-...|.++|.+++.++.|.+++-++.-..+..+.
T Consensus 387 sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is-~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLL 464 (557)
T KOG3785|consen 387 SYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRIS-GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLL 464 (557)
T ss_pred HHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhc-ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHH
Confidence 76443344444 47889999999999999998887 2233333333456788999999999999999998644455444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhccccccccCc
Q 048364 323 GSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGS 392 (400)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 392 (400)
..+..-|.+.+.+--|.+.|+.+...+ | ++.-| .|+-....-+|..+..+.-.|.|..
T Consensus 465 qlIAn~CYk~~eFyyaaKAFd~lE~lD-P--~pEnW---------eGKRGACaG~f~~l~~~~~~~~p~~ 522 (557)
T KOG3785|consen 465 QLIANDCYKANEFYYAAKAFDELEILD-P--TPENW---------EGKRGACAGLFRQLANHKTDPIPIS 522 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHccC-C--Ccccc---------CCccchHHHHHHHHHcCCCCCCchh
Confidence 445567889999999999999998888 5 55555 3555566677777777666666654
No 124
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.50 E-value=4.6e-06 Score=72.81 Aligned_cols=123 Identities=14% Similarity=0.151 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHH
Q 048364 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACK 330 (400)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~ 330 (400)
....++..+...++++.|..+++++.+. .|+ ....+++.+...++-.+|.+++++. ...| +......-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445556666677888888888888743 244 3445777777777888888888777 3233 5556666677788
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 331 EHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 331 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
+.++++.|..+.+++.... | .+..+|..|+.+|...|+++.|+..++.++
T Consensus 246 ~k~~~~lAL~iAk~av~ls-P-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELS-P-SEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhC-c-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8888888888888888888 7 788888888888888888888888888776
No 125
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=0.00048 Score=60.73 Aligned_cols=336 Identities=13% Similarity=0.050 Sum_probs=170.9
Q ss_pred CCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccch-hhhhHHHHHH-HhCCHHHHHHHHhhCCCC---ChhhHHHH
Q 048364 13 PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHV-YVATSLLHEY-VVTSFGFARKLFDELPER---NAVTWNTM 87 (400)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~-~~g~~~~a~~~~~~~~~~---~~~~~~~l 87 (400)
++|-..|+.=..+++..|++++|++=-.+..+ +.|+- --|...-.++ -.|++++|+..|.+-.+. |...++-+
T Consensus 33 p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl 110 (539)
T KOG0548|consen 33 PTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGL 110 (539)
T ss_pred CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhH
Confidence 34666688888899999999998877666655 45553 3677777888 899999999999887753 33344444
Q ss_pred HHHHHcC---C------------------------------------------------ChHHHHHHHhhC---------
Q 048364 88 IKGYSKS---G------------------------------------------------NVCEARDFFERM--------- 107 (400)
Q Consensus 88 ~~~~~~~---~------------------------------------------------~~~~a~~~~~~~--------- 107 (400)
..++... + ++..|.-.+...
T Consensus 111 ~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~ 190 (539)
T KOG0548|consen 111 AQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASG 190 (539)
T ss_pred HHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccc
Confidence 4443110 0 000111110000
Q ss_pred -------CCC------------C----------hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Q 048364 108 -------PLR------------N----------VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGC 158 (400)
Q Consensus 108 -------~~~------------~----------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~ 158 (400)
..| | ..-+-.+.++..+..+++.|++-+.... .+.-+..-++....++
T Consensus 191 ~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~---el~~~it~~~n~aA~~ 267 (539)
T KOG0548|consen 191 IEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKAL---ELATDITYLNNIAAVY 267 (539)
T ss_pred cccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHH---hHhhhhHHHHHHHHHH
Confidence 000 0 0112334444555555555555555555 1122222333444445
Q ss_pred hcccchhhhhhhhhhhHHHhccccc------hHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCCh
Q 048364 159 SHLGSVGLLMGKSAHGFIVKNEWEL------NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYS 232 (400)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 232 (400)
...|.... .........+.|-+. -...+..+..+|.+.++++.|...|.+...+... -....+....
T Consensus 268 ~e~~~~~~--c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~ 340 (539)
T KOG0548|consen 268 LERGKYAE--CIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEA 340 (539)
T ss_pred HhccHHHH--hhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHH
Confidence 55555544 333333333333211 0111122233444455555555555553321110 0011111222
Q ss_pred hhHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 048364 233 EDALSLFEMMQATGVKPNE-MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR 311 (400)
Q Consensus 233 ~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 311 (400)
+++........-. .|.. .-...-...+.+.|++..|...|.++.+. .+.|...|....-+|.+.|.+..|+.-.+
T Consensus 341 Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~ 416 (539)
T KOG0548|consen 341 EKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAK 416 (539)
T ss_pred HHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3333322222211 1211 11111234456677777887777777753 24466777777777778887777777665
Q ss_pred hc-cCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhh
Q 048364 312 TM-RLEPNV-IIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366 (400)
Q Consensus 312 ~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 366 (400)
.. ...|+. ..|..=..++....++++|.+.|++.++.+ | .+......+.+++.
T Consensus 417 ~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d-p-~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 417 KCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD-P-SNAEAIDGYRRCVE 471 (539)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-c-hhHHHHHHHHHHHH
Confidence 55 344432 344444445555567777777777777777 6 55555555544444
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=4.5e-05 Score=66.32 Aligned_cols=117 Identities=19% Similarity=0.129 Sum_probs=89.8
Q ss_pred HHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc-HHHHHHHHHHHHhcCCHHHH
Q 048364 261 CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN-VIIWGSFLAACKEHKQFDMA 338 (400)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a 338 (400)
+...|++++|+..++.+.+ ..+.|+..+....+.+.+.++.++|.+.++++ ...|+ ....-.+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 4467888888888888875 33445566666777888888888888888888 66676 45566777888888888888
Q ss_pred HHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHH
Q 048364 339 ERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLM 381 (400)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 381 (400)
+.++++..... | .++..|..|..+|...|+..++.....+.
T Consensus 394 i~~L~~~~~~~-p-~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 394 IRILNRYLFND-P-EDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHhhcC-C-CCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 88888888888 7 88888888888888877766665544443
No 127
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.43 E-value=5e-06 Score=62.13 Aligned_cols=95 Identities=13% Similarity=0.067 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHH
Q 048364 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACK 330 (400)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~ 330 (400)
....+...+...|++++|...++.+... .+.+...+..+..++...|++++|...++.. ...| +...+..+...+.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 3444555555666666666666665531 2334455555666666666666666666655 3333 3445555555666
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 048364 331 EHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 331 ~~~~~~~a~~~~~~~~~~~ 349 (400)
..|++++|...+++..+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 6666666666666666655
No 128
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.42 E-value=3.4e-05 Score=61.59 Aligned_cols=127 Identities=19% Similarity=0.142 Sum_probs=109.7
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--cCCccHHHHHHHHHHHHhc
Q 048364 255 TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--RLEPNVIIWGSFLAACKEH 332 (400)
Q Consensus 255 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~p~~~~~~~l~~~~~~~ 332 (400)
..+-..+...|+-+....+...... ..+.+.......+....+.|++..|...+++. .-+||...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 5566677778888888888877653 33446667777999999999999999999999 4466888999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhccc
Q 048364 333 KQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 333 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 385 (400)
|++++|..-+.+..+.. | .++..++.+...|.-.|+.+.|..++......+
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 148 GRFDEARRAYRQALELA-P-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred cChhHHHHHHHHHHHhc-c-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 99999999999999999 8 899999999999999999999999998876543
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.41 E-value=0.00014 Score=68.96 Aligned_cols=161 Identities=9% Similarity=0.063 Sum_probs=120.5
Q ss_pred cccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHH
Q 048364 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTG 256 (400)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 256 (400)
.+..++..+..|..+....|.+++|..+++.+.+ | +......++..+.+.+++++|+..+++...... -+......
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~ 159 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILL 159 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHH
Confidence 3455678888888999999999999999998886 4 345677788889999999999999999888632 24566677
Q ss_pred HHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--cCCccHHHHHHHHHHHHhcCC
Q 048364 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--RLEPNVIIWGSFLAACKEHKQ 334 (400)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~p~~~~~~~l~~~~~~~~~ 334 (400)
+..++.+.|++++|..+|+++.. ..+.+..++..+..++...|+.++|...|++. ...|-...|+..+. +
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~------~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV------D 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH------H
Confidence 77788889999999999999985 33345778888899999999999999999988 33455555555442 3
Q ss_pred HHHHHHHHHHHHHcC
Q 048364 335 FDMAERVIKQALRMV 349 (400)
Q Consensus 335 ~~~a~~~~~~~~~~~ 349 (400)
...-..++++..-.+
T Consensus 232 ~~~~~~~~~~~~~~~ 246 (694)
T PRK15179 232 LNADLAALRRLGVEG 246 (694)
T ss_pred HHHHHHHHHHcCccc
Confidence 344445555554443
No 130
>PLN02789 farnesyltranstransferase
Probab=98.39 E-value=6.1e-05 Score=64.54 Aligned_cols=193 Identities=12% Similarity=0.041 Sum_probs=139.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccCCCc---ccHHHHHHHHHhCC-ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048364 187 IATILVDMYAKCGFLKYALMVFELMEERNV---ISWTALICGSAHRG-YSEDALSLFEMMQATGVKPNEMTFTGVLTACV 262 (400)
Q Consensus 187 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 262 (400)
++..+-..+...++.++|..+..++.+.++ .+|+.-..++...| ++++++..++++.....+ +..+|+.-...+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHH
Confidence 334445556677889999999999887444 34555555666667 679999999999887433 4455665555555
Q ss_pred hcCCh--hhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhc---CCH
Q 048364 263 HTGLV--DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEH---KQF 335 (400)
Q Consensus 263 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~ 335 (400)
+.|+. +++..+++.+.+ .-+-+..+|+...-++...|+++++++.++++ ...| |...|+....++.+. |+.
T Consensus 118 ~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence 66653 677888888884 23447788998888999999999999999998 4344 556676666555544 222
Q ss_pred ----HHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcc----cchHHHHHHHHHHhcc
Q 048364 336 ----DMAERVIKQALRMVKPENDGGVFTLICDLYTMN----EKWEGAERVRKLMLNQ 384 (400)
Q Consensus 336 ----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~~ 384 (400)
++...+..+++... | .+..+|..+...+... ++..+|.+.+.+..+.
T Consensus 196 ~~~~e~el~y~~~aI~~~-P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~ 250 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-P-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK 250 (320)
T ss_pred cccHHHHHHHHHHHHHhC-C-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc
Confidence 56788888999999 8 8999999999998873 4456688887776653
No 131
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.38 E-value=2.1e-05 Score=68.72 Aligned_cols=128 Identities=10% Similarity=0.021 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 264 (400)
......|+..+...++++.|..+|+++.+.++.....++..+...++-.+|++++++..... +-+......-...|.+.
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 34556677778888999999999999999888888888899988999999999999998752 23556666666778899
Q ss_pred CChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccC
Q 048364 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRL 315 (400)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (400)
++++.|.++.+++.+ -.+.+..+|..|..+|.+.|+++.|+-.++.++.
T Consensus 248 ~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 248 KKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 999999999999984 2333567999999999999999999999998843
No 132
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.34 E-value=2.2e-05 Score=59.31 Aligned_cols=124 Identities=14% Similarity=0.130 Sum_probs=72.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccH----HHHHHHHH
Q 048364 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNV----IIWGSFLA 327 (400)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~----~~~~~l~~ 327 (400)
|..++..+ ..++...+...++.+.++++-.+ .....-.+...+...|++++|...|+.. ...|+. .....+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33444443 36666667666777765322111 1222333455666777777777777776 222332 23344566
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHH
Q 048364 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLM 381 (400)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 381 (400)
.+...|++++|...++..... + ..+..+...+.+|.+.|++++|...|+..
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~--~-~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDE--A-FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCc--c-hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 677777777777777653222 2 45566677777777777777777777653
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.34 E-value=0.00025 Score=61.87 Aligned_cols=115 Identities=16% Similarity=0.103 Sum_probs=58.5
Q ss_pred HhCCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC-hhhHHHHHHHHHhcCChH
Q 048364 227 AHRGYSEDALSLFEMMQATGVKPN-EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR-IQHYGCMVDLFGKAGFLE 304 (400)
Q Consensus 227 ~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 304 (400)
...|++++|+..++.+... .|+ ..........+.+.++..+|.+.++.+.. ..|+ ....-.+..+|.+.|++.
T Consensus 317 ~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCChH
Confidence 3445555666666555544 233 23333344445555666666666655552 2333 333444555555666666
Q ss_pred HHHHHHHhc--cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048364 305 EAYEVIRTM--RLEPNVIIWGSFLAACKEHKQFDMAERVIKQAL 346 (400)
Q Consensus 305 ~a~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 346 (400)
+|..+++.. ..+-|...|..|.++|...|+..++..-.-+..
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 665555555 223345555555566555555555544444333
No 134
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.33 E-value=1.2e-06 Score=47.90 Aligned_cols=34 Identities=35% Similarity=0.684 Sum_probs=28.5
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC
Q 048364 217 ISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250 (400)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 250 (400)
.+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688888888888888888888888888888886
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.31 E-value=4.1e-05 Score=57.17 Aligned_cols=95 Identities=17% Similarity=0.236 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHh
Q 048364 288 QHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365 (400)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 365 (400)
.....+...+...|++++|.+.++.. ...| +...+..+...+...|++++|...+++..+.+ | .++.++..+..+|
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p-~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-P-DDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C-CChHHHHHHHHHH
Confidence 44555666667777777777777766 3333 45566666677777777777777777777766 6 6667777777777
Q ss_pred hcccchHHHHHHHHHHhcc
Q 048364 366 TMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 366 ~~~g~~~~a~~~~~~m~~~ 384 (400)
...|++++|...+++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777666653
No 136
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.31 E-value=0.0022 Score=56.92 Aligned_cols=125 Identities=12% Similarity=0.198 Sum_probs=82.8
Q ss_pred CCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC--CChhhHHHHHH
Q 048364 13 PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE--RNAVTWNTMIK 89 (400)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~--~~~~~~~~l~~ 89 (400)
+-|..+|+.||+-+... ..+++++.++++...- +.....|..-+..- ...+++...++|.+-.. -+...|...+.
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 66889999999998776 9999999999987642 23566788888888 99999999999987664 36677777766
Q ss_pred HHHc-CCChHH----HHHHHhh------CCCCChhhHHHHHH---------HHHhcCCcchHHHHHHHHH
Q 048364 90 GYSK-SGNVCE----ARDFFER------MPLRNVASWSAMIA---------AYLNAGAYDPGLKLFREMI 139 (400)
Q Consensus 90 ~~~~-~~~~~~----a~~~~~~------~~~~~~~~~~~l~~---------~~~~~g~~~~a~~~~~~m~ 139 (400)
.--+ .++... ..+.|+- |...+-..|+..+. -|....+++...++|+++.
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral 164 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRAL 164 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHh
Confidence 4433 222222 1122221 11223334444332 3445557777888888886
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=0.00013 Score=57.93 Aligned_cols=184 Identities=11% Similarity=0.102 Sum_probs=141.1
Q ss_pred hcCCHHHHHHHHHhccC--------CCc-ccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCC
Q 048364 197 KCGFLKYALMVFELMEE--------RNV-ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL-TACVHTGL 266 (400)
Q Consensus 197 ~~g~~~~A~~~~~~~~~--------~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~-~~~~~~~~ 266 (400)
...+.++..+++..+.. ++. ..|..++-+....|+.+.|...++.+.+.- |.+.-...+= .-+-..|+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhc
Confidence 45678888888887764 122 235555666778899999999999998872 5543332222 22455799
Q ss_pred hhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--cCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048364 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--RLEPNVIIWGSFLAACKEHKQFDMAERVIKQ 344 (400)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 344 (400)
+++|+++++.+.++ -+.|..++-.-+-..-..|+.-+|++.+.+. .+..|...|.-+...|...|++++|.-.+++
T Consensus 102 ~~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 99999999999963 3556777777777777888888888888777 5667899999999999999999999999999
Q ss_pred HHHcCCCCCCchHHHHHHHHhhccc---chHHHHHHHHHHhcccc
Q 048364 345 ALRMVKPENDGGVFTLICDLYTMNE---KWEGAERVRKLMLNQNV 386 (400)
Q Consensus 345 ~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~ 386 (400)
++-.. | .++..+..+...+.-.| +.+-|.+++.+..+...
T Consensus 180 ~ll~~-P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 180 LLLIQ-P-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHcC-C-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 99998 8 88999999988876554 56678888888877544
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=0.00024 Score=56.61 Aligned_cols=171 Identities=12% Similarity=0.111 Sum_probs=125.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHH---HHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048364 187 IATILVDMYAKCGFLKYALMVFELMEERNVISWTAL---ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263 (400)
Q Consensus 187 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 263 (400)
+|..++-+....|+.+.|..+++.+...-+.++... .--+-..|++++|+++|+.+.+.+ +.|..++.--+...-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 445556666778889999999988776333332221 123456799999999999998875 4466777766666777
Q ss_pred cCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcC---CHHHH
Q 048364 264 TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHK---QFDMA 338 (400)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~---~~~~a 338 (400)
.|+.-+|++-+....+ .+..|...|..+...|...|++++|.-.++++ -+.| +...+..+...+.-.| +.+.+
T Consensus 133 ~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7888889888888875 56789999999999999999999999999999 4455 4555666666655444 67788
Q ss_pred HHHHHHHHHcCCCCCCchHHHHHH
Q 048364 339 ERVIKQALRMVKPENDGGVFTLIC 362 (400)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~l~ 362 (400)
.+++.+.++.. | .+...+..+.
T Consensus 211 rkyy~~alkl~-~-~~~ral~GI~ 232 (289)
T KOG3060|consen 211 RKYYERALKLN-P-KNLRALFGIY 232 (289)
T ss_pred HHHHHHHHHhC-h-HhHHHHHHHH
Confidence 99999999988 6 4444444433
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.26 E-value=1.9e-06 Score=46.66 Aligned_cols=33 Identities=39% Similarity=0.661 Sum_probs=24.9
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC
Q 048364 217 ISWTALICGSAHRGYSEDALSLFEMMQATGVKP 249 (400)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 249 (400)
.+|+.++.+|++.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 140
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.25 E-value=1.5e-05 Score=59.11 Aligned_cols=97 Identities=9% Similarity=0.035 Sum_probs=75.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 048364 287 IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDL 364 (400)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 364 (400)
....-.+...+...|++++|.++|+-+ .+.| +..-|-.|.-++-..|++++|+..+..+.... | .++..+..+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~-ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-I-DAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C-CCchHHHHHHHH
Confidence 334445566677888888888888887 5556 44566777778888888888888888888888 7 888888888888
Q ss_pred hhcccchHHHHHHHHHHhccc
Q 048364 365 YTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 365 ~~~~g~~~~a~~~~~~m~~~~ 385 (400)
+...|+.+.|.+.|+..+...
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 888888888888888777543
No 141
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.24 E-value=0.00059 Score=64.65 Aligned_cols=176 Identities=10% Similarity=-0.013 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccCC---CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC-HH--HHHHHHH
Q 048364 186 QIATILVDMYAKCGFLKYALMVFELMEER---NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN-EM--TFTGVLT 259 (400)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~--~~~~l~~ 259 (400)
..|..|...|+..-+...|.+.|++..+- +...+-.....|++..+++.|..+.-..-+ ..|- .. -|....-
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q--ka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ--KAPAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh--hchHHHHHhhhhhccc
Confidence 34555555565555555666666655542 334455555666666666666655211111 1110 11 1111222
Q ss_pred HHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHHHHHH-HHHHHHhcCCHHH
Q 048364 260 ACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWGS-FLAACKEHKQFDM 337 (400)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~-l~~~~~~~~~~~~ 337 (400)
.|.+.++..+|..-|+...+ --+.|...|..++++|.++|++..|.++|.+. .++|+...-.- .....+..|++.+
T Consensus 571 yyLea~n~h~aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cccCccchhhHHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHH
Confidence 34455555666655555552 22224555666666666666666666666655 44443321111 1112344556666
Q ss_pred HHHHHHHHHHcCCCCCCchHHHHHHHHhhc
Q 048364 338 AERVIKQALRMVKPENDGGVFTLICDLYTM 367 (400)
Q Consensus 338 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 367 (400)
|...+..++... . ........++..+.+
T Consensus 649 ald~l~~ii~~~-s-~e~~~q~gLaE~~ir 676 (1238)
T KOG1127|consen 649 ALDALGLIIYAF-S-LERTGQNGLAESVIR 676 (1238)
T ss_pred HHHHHHHHHHHH-H-HHHHhhhhHHHHHHH
Confidence 666666555544 2 233333444444443
No 142
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.22 E-value=4.9e-05 Score=55.22 Aligned_cols=97 Identities=10% Similarity=0.101 Sum_probs=54.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc----HHHHHHHHH
Q 048364 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN----VIIWGSFLA 327 (400)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~----~~~~~~l~~ 327 (400)
+..+...+.+.|++++|.+.++.+.....-.+ ....+..+..++.+.|+++.|.+.|+.+ ...|+ ...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 44455555666666666666666654311111 1234445666666666666666666665 22232 334555556
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 328 ACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
++.+.|++++|...++++++.. |
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~-p 107 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRY-P 107 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHC-c
Confidence 6666666666666666666666 5
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.20 E-value=0.00014 Score=54.99 Aligned_cols=116 Identities=12% Similarity=0.083 Sum_probs=64.3
Q ss_pred CCChhhHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC--hhhHHHHHHHHHhcCChH
Q 048364 229 RGYSEDALSLFEMMQATGVKP--NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR--IQHYGCMVDLFGKAGFLE 304 (400)
Q Consensus 229 ~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 304 (400)
.++...+...++.+......- .......+...+...|++++|...|+.+... ...|+ ......+...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 566666666666666542111 1122333445566667777777777776643 21221 123334556666677777
Q ss_pred HHHHHHHhc-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048364 305 EAYEVIRTM-RLEPNVIIWGSFLAACKEHKQFDMAERVIKQA 345 (400)
Q Consensus 305 ~a~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 345 (400)
+|+..++.. +-......+......|...|++++|...|++.
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 777777665 21223344555666677777777777776654
No 144
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.19 E-value=2.1e-06 Score=46.85 Aligned_cols=35 Identities=31% Similarity=0.710 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCH
Q 048364 113 ASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ 148 (400)
Q Consensus 113 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~ 148 (400)
.+||+++.+|++.|++++|.++|++|. ..|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~-~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEML-ERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCCC
Confidence 378999999999999999999999998 78998873
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.19 E-value=2.7e-06 Score=46.04 Aligned_cols=34 Identities=12% Similarity=0.253 Sum_probs=32.0
Q ss_pred chhHHHHHHHhcccchhHHHHHHHHHHHHhCccc
Q 048364 16 SFSILHILKSCTHFNNLTVIHHLHSHILKLGFIS 49 (400)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 49 (400)
..+|+.++.+|++.|+++.|.++|++|.+.|+.|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.19 E-value=2.8e-05 Score=53.64 Aligned_cols=92 Identities=21% Similarity=0.228 Sum_probs=64.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc-cCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhc
Q 048364 290 YGCMVDLFGKAGFLEEAYEVIRTM-RLEPN-VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM 367 (400)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 367 (400)
+..+...+...|++++|...+++. ...|+ ...+..+...+...|++++|...+++..... | .+..++..++.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-P-DNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-C-cchhHHHHHHHHHHH
Confidence 445666677777777777777776 33343 3556666777777777888888888777776 6 555677777777777
Q ss_pred ccchHHHHHHHHHHhc
Q 048364 368 NEKWEGAERVRKLMLN 383 (400)
Q Consensus 368 ~g~~~~a~~~~~~m~~ 383 (400)
.|++++|...++...+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7888888777776654
No 147
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.19 E-value=3e-06 Score=57.23 Aligned_cols=76 Identities=17% Similarity=0.292 Sum_probs=34.3
Q ss_pred CChHHHHHHHHhc-cCCc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHH
Q 048364 301 GFLEEAYEVIRTM-RLEP---NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAER 376 (400)
Q Consensus 301 g~~~~a~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 376 (400)
|+++.|+.+++++ ...| +...+-.+..+|.+.|++++|..++++ .+.+ + .+......++.++.+.|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-P-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-H-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-C-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4455555555554 1122 223333345555555555555555555 3333 2 233444444555555555555555
Q ss_pred HHH
Q 048364 377 VRK 379 (400)
Q Consensus 377 ~~~ 379 (400)
.++
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 148
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.18 E-value=0.003 Score=54.11 Aligned_cols=102 Identities=18% Similarity=0.077 Sum_probs=48.9
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcC
Q 048364 222 LICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301 (400)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 301 (400)
-+.-+...|+...|.++-.+. + .|+..-|...+.+++..++|++..++-.. +-++.-|..++.+|.+.|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHHHCC
Confidence 344444555555555443332 1 24555555555566655655554443221 112344555555555566
Q ss_pred ChHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 048364 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERV 341 (400)
Q Consensus 302 ~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 341 (400)
+..+|..++.++. + ..-+..|.+.|++.+|.+.
T Consensus 252 ~~~eA~~yI~k~~--~-----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 252 NKKEASKYIPKIP--D-----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CHHHHHHHHHhCC--h-----HHHHHHHHHCCCHHHHHHH
Confidence 6555555555531 1 2223444555555555433
No 149
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.13 E-value=0.0083 Score=56.59 Aligned_cols=65 Identities=12% Similarity=0.172 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcccccc
Q 048364 322 WGSFLAACKEHKQ---FDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRK 388 (400)
Q Consensus 322 ~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 388 (400)
.+.|+..+.+.++ +-+|+.+++...... | .+..+-..++++|+-.|-+..|.+.++.+--..|+.
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~-hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~ 506 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-P-HNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQT 506 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-C-ccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhh
Confidence 4667777877776 457788888888888 7 788888899999999999999999998876555543
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.09 E-value=1.3e-05 Score=54.05 Aligned_cols=80 Identities=19% Similarity=0.272 Sum_probs=36.2
Q ss_pred CChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCc-cHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048364 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEP-NVIIWGSFLAACKEHKQFDMAERVIK 343 (400)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 343 (400)
|+++.|+.+++++.+.....++...+..+..+|.+.|++++|..++++....| +....-.+..+|.+.|++++|+..++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 45555555555555332111122333335555555555555555555432222 11222233455555555555555554
Q ss_pred H
Q 048364 344 Q 344 (400)
Q Consensus 344 ~ 344 (400)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 4
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.09 E-value=6.8e-05 Score=54.45 Aligned_cols=97 Identities=12% Similarity=0.060 Sum_probs=81.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--CchHHHH
Q 048364 288 QHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN----VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN--DGGVFTL 360 (400)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~ 360 (400)
.++..++..+.+.|++++|.+.|..+ ...|+ ...+..+..++.+.|++++|...++++.... |.. .+.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~ 81 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-PKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-CCCCcccHHHHH
Confidence 45667888899999999999999998 33443 3466778899999999999999999999887 522 3567889
Q ss_pred HHHHhhcccchHHHHHHHHHHhccc
Q 048364 361 ICDLYTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 361 l~~~~~~~g~~~~a~~~~~~m~~~~ 385 (400)
++.++...|++++|...++++.+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 9999999999999999999998764
No 152
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.04 E-value=0.00072 Score=57.46 Aligned_cols=89 Identities=16% Similarity=0.145 Sum_probs=37.7
Q ss_pred HHHHHHHhc-CCHHHHHHHHHhccC----CC-----cccHHHHHHHHHhCCChhhHHHHHHHHHHCCCC-----CCHH-H
Q 048364 190 ILVDMYAKC-GFLKYALMVFELMEE----RN-----VISWTALICGSAHRGYSEDALSLFEMMQATGVK-----PNEM-T 253 (400)
Q Consensus 190 ~l~~~~~~~-g~~~~A~~~~~~~~~----~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~-~ 253 (400)
.+...|... |+++.|.+.|++..+ .+ ...+..+...+.+.|++++|.++|++....-.. ++.. .
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 344444444 555555555554432 01 122334445555556666666666555443211 1111 1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhh
Q 048364 254 FTGVLTACVHTGLVDEGRKYFKMID 278 (400)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (400)
|...+-++...|+...|...++...
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2222223444555555555555544
No 153
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.00 E-value=0.0017 Score=55.20 Aligned_cols=115 Identities=11% Similarity=0.104 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhC-CChhhHHHHHHHHHHC----CCCCC--HHHHHHHHH
Q 048364 187 IATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHR-GYSEDALSLFEMMQAT----GVKPN--EMTFTGVLT 259 (400)
Q Consensus 187 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~----~~~p~--~~~~~~l~~ 259 (400)
.+...+..|...|++..|-+.+.. +...|... |++++|++.|++..+. | .+. ...+..+..
T Consensus 96 ~~~~A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 96 CYEKAIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHH
Confidence 344445556666666665555433 34555565 6777777777665442 2 111 234455556
Q ss_pred HHHhcCChhhHHHHHHHhhhhcCC----CCCh-hhHHHHHHHHHhcCChHHHHHHHHhc
Q 048364 260 ACVHTGLVDEGRKYFKMIDEEYDL----EPRI-QHYGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~----~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
.+.+.|++++|.++|+++....-- +.+. ..+...+-++...||+..|.+.+++.
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666677777777777666532110 1111 12223344555566666666666665
No 154
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.98 E-value=1.1e-05 Score=42.48 Aligned_cols=30 Identities=33% Similarity=0.658 Sum_probs=22.3
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHHHHCCC
Q 048364 218 SWTALICGSAHRGYSEDALSLFEMMQATGV 247 (400)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 247 (400)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777777653
No 155
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.95 E-value=0.011 Score=51.63 Aligned_cols=112 Identities=11% Similarity=0.062 Sum_probs=73.1
Q ss_pred hhhHHHHHHHhhhhcCCCCChhhHHHHHH----HHHhc---CChH---HHHHHHHhccCCc----cHHHHHHHHHH--HH
Q 048364 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVD----LFGKA---GFLE---EAYEVIRTMRLEP----NVIIWGSFLAA--CK 330 (400)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~---g~~~---~a~~~~~~~~~~p----~~~~~~~l~~~--~~ 330 (400)
-++|..+++.+.+- .+-|..+-|.+.. .|... ..+. +-..+.++.|+.| +...-|.+..+ +.
T Consensus 396 dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLy 473 (549)
T PF07079_consen 396 DEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLY 473 (549)
T ss_pred cHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHH
Confidence 67778888777731 1223333332221 22221 1122 2233444447666 34455666554 56
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 331 EHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 331 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
.+|++.++.-.-....+.. |++.+|..++.+.....++++|+.++..++-
T Consensus 474 sqgey~kc~~ys~WL~~ia---PS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLTKIA---PSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred hcccHHHHHHHHHHHHHhC---CcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 7899999988888887776 5999999999999999999999999988764
No 156
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.95 E-value=4.1e-05 Score=49.40 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=52.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhccc-chHHHHHHHHHHhc
Q 048364 318 NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNE-KWEGAERVRKLMLN 383 (400)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 383 (400)
+..+|..+...+...|++++|+..|++.++.. | .++.++..++.+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-P-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-T-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 35677778888888888888888888888888 7 78888888888888888 78888888887664
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.93 E-value=0.00019 Score=49.40 Aligned_cols=91 Identities=21% Similarity=0.197 Sum_probs=47.6
Q ss_pred HHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCC
Q 048364 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQ 334 (400)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 334 (400)
+...+...|++++|...++.+.+. .+.+...+..+..++...|++++|.+.++.. ...| +..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 444445555555555555555431 1222244455555555556666666666554 2222 22355555556666666
Q ss_pred HHHHHHHHHHHHHcC
Q 048364 335 FDMAERVIKQALRMV 349 (400)
Q Consensus 335 ~~~a~~~~~~~~~~~ 349 (400)
+++|...+++..+..
T Consensus 84 ~~~a~~~~~~~~~~~ 98 (100)
T cd00189 84 YEEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHHHHHHccC
Confidence 666666666655544
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.93 E-value=7.7e-05 Score=65.41 Aligned_cols=104 Identities=13% Similarity=0.110 Sum_probs=86.0
Q ss_pred HHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCC
Q 048364 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQ 334 (400)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 334 (400)
-...+...|++++|...|+++.+. .+.+...|..+..+|...|++++|+..+++. .+.| +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 345567889999999999999953 3446778888999999999999999999998 6666 56678888999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 048364 335 FDMAERVIKQALRMVKPENDGGVFTLICDL 364 (400)
Q Consensus 335 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 364 (400)
+++|...|+++++.. | .+..+...+..+
T Consensus 86 ~~eA~~~~~~al~l~-P-~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLA-P-GDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhC-C-CCHHHHHHHHHH
Confidence 999999999999999 8 666665555444
No 159
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.92 E-value=0.00034 Score=61.66 Aligned_cols=122 Identities=8% Similarity=0.024 Sum_probs=88.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcC-CCCChhhHHHHHHHHHhcCChHHHHHHHHhc---cCCccHHH
Q 048364 246 GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD-LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM---RLEPNVII 321 (400)
Q Consensus 246 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~p~~~~ 321 (400)
+.+.+...+..++..+....+.+.+..++.+.+.... ...-..+..++++.|...|..++++.+++.= |+=||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 3455667777778877777778888887777764311 1122345567888888888888888888764 88888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcc
Q 048364 322 WGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368 (400)
Q Consensus 322 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 368 (400)
+|.|+..+.+.|++..|.++...|...+.. .++.++...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~-~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEF-DNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHHh
Confidence 888888888888888888888888877744 6667776666665544
No 160
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.91 E-value=0.0057 Score=50.46 Aligned_cols=177 Identities=11% Similarity=0.060 Sum_probs=105.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC--CCcc-c---HHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048364 188 ATILVDMYAKCGFLKYALMVFELMEE--RNVI-S---WTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261 (400)
Q Consensus 188 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 261 (400)
.-.....+...|++++|.+.|+.+.. |+.. . .-.++.++.+.+++++|...+++..+....-....+...+.+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 33345556678888888888888876 3221 1 2345567788888888888888887763322223333344433
Q ss_pred Hh--cC---------------C---hhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHH
Q 048364 262 VH--TG---------------L---VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVII 321 (400)
Q Consensus 262 ~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~ 321 (400)
+. .+ + ..+|...|+.+.+ -|=...-..+|...+..+...--..-
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~la~~e 178 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDRLAKYE 178 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHHHHHHH
Confidence 31 11 1 1233344444443 22222333444443333311111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 322 WGSFLAACKEHKQFDMAERVIKQALRMVKP--ENDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 322 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
+ .+.+-|.+.|++.-|..-++.+++.- | +....+...+..+|...|..++|..+...+.
T Consensus 179 ~-~ia~~Y~~~~~y~AA~~r~~~v~~~Y-p~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 L-SVAEYYTKRGAYVAVVNRVEQMLRDY-PDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred H-HHHHHHHHcCchHHHHHHHHHHHHHC-CCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1 35567889999999999999999876 4 1334567788889999999999988776553
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.89 E-value=0.00024 Score=55.43 Aligned_cols=78 Identities=21% Similarity=0.140 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc-cCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 048364 290 YGCMVDLFGKAGFLEEAYEVIRTM-RLEPN----VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDL 364 (400)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 364 (400)
+..+...+...|++++|...|++. ...|+ ...+..+..++.+.|++++|...++++++.. | .+...+..++.+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p-~~~~~~~~lg~~ 115 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-P-KQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c-ccHHHHHHHHHH
Confidence 333444444444444444444444 11111 2344444455555555555555555555544 4 344444444444
Q ss_pred hhccc
Q 048364 365 YTMNE 369 (400)
Q Consensus 365 ~~~~g 369 (400)
+...|
T Consensus 116 ~~~~g 120 (172)
T PRK02603 116 YHKRG 120 (172)
T ss_pred HHHcC
Confidence 44443
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.89 E-value=0.00037 Score=61.22 Aligned_cols=102 Identities=12% Similarity=-0.049 Sum_probs=83.1
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcC
Q 048364 222 LICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301 (400)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 301 (400)
-...+...|++++|+..|++..+... -+...|..+..++...|++++|...++.+... -+.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 34567788999999999999998743 35678888889999999999999999999842 2346678889999999999
Q ss_pred ChHHHHHHHHhc-cCCccHHHHHHHH
Q 048364 302 FLEEAYEVIRTM-RLEPNVIIWGSFL 326 (400)
Q Consensus 302 ~~~~a~~~~~~~-~~~p~~~~~~~l~ 326 (400)
++++|...|++. .+.|+.......+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999998 6677655544444
No 163
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.86 E-value=4.8e-05 Score=48.35 Aligned_cols=56 Identities=18% Similarity=0.243 Sum_probs=36.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 326 LAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 326 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
...+.+.|++++|...|+++++.. | .++..+..++.++...|++++|...++++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-P-DNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-T-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445566666666666666666666 6 5666666666666666666666666666653
No 164
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.85 E-value=0.00023 Score=49.16 Aligned_cols=78 Identities=14% Similarity=0.165 Sum_probs=58.9
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------ChhhHHHHHHHhhhhcCCCCChhhHH
Q 048364 221 ALICGSAHRGYSEDALSLFEMMQATGV-KPNEMTFTGVLTACVHTG--------LVDEGRKYFKMIDEEYDLEPRIQHYG 291 (400)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (400)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-....+|+.|. ..+++|+..+|+
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL-~~~lKP~~etYn 108 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL-SNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH-HhccCCcHHHHH
Confidence 445556666889999999999999998 889999999998876542 3445667777777 447888888888
Q ss_pred HHHHHHHh
Q 048364 292 CMVDLFGK 299 (400)
Q Consensus 292 ~l~~~~~~ 299 (400)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 87776654
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.85 E-value=0.00027 Score=54.90 Aligned_cols=95 Identities=17% Similarity=-0.054 Sum_probs=70.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHH
Q 048364 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN----VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360 (400)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 360 (400)
....+..++..+...|++++|...|++. .+.|+ ..++..+...+...|++++|...++++.+.. | ....++..
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~-~~~~~~~~ 111 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-P-FLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c-CcHHHHHH
Confidence 3455677777777888888888888877 33332 3467888888888999999999999988877 6 66677777
Q ss_pred HHHHhh-------cccchHHHHHHHHHHh
Q 048364 361 ICDLYT-------MNEKWEGAERVRKLML 382 (400)
Q Consensus 361 l~~~~~-------~~g~~~~a~~~~~~m~ 382 (400)
+...+. ..|+++.|...+++..
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 777777 7788887766665543
No 166
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00042 Score=56.99 Aligned_cols=110 Identities=16% Similarity=0.135 Sum_probs=80.9
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCCchHH
Q 048364 284 EPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKE---HKQFDMAERVIKQALRMVKPENDGGVF 358 (400)
Q Consensus 284 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 358 (400)
+-|...|-.|...|...|+.+.|..-|.+. .+.| +...+..+..++.. .....++..+|++++..+ | .+..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~-~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-P-ANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-C-ccHHHH
Confidence 447788888888888888888888888887 3333 44445555555433 334678888888888888 7 888888
Q ss_pred HHHHHHhhcccchHHHHHHHHHHhccccccccCcccc
Q 048364 359 TLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395 (400)
Q Consensus 359 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 395 (400)
..|...+...|++.+|...++.|.+..-..+|..+-|
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 8888888888888888888888887666555554443
No 167
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.83 E-value=7.7e-05 Score=60.91 Aligned_cols=98 Identities=17% Similarity=0.217 Sum_probs=81.6
Q ss_pred HHHhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc-HHHHHHHHHHHHhcCCHH
Q 048364 260 ACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN-VIIWGSFLAACKEHKQFD 336 (400)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~ 336 (400)
-+.+.+++.+|...|...++ +.| |...|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 46788999999999999993 444 6777888899999999999999988877 77775 458999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCchHHHHHH
Q 048364 337 MAERVIKQALRMVKPENDGGVFTLIC 362 (400)
Q Consensus 337 ~a~~~~~~~~~~~~~~~~~~~~~~l~ 362 (400)
+|++.|++.++.. | .+......|-
T Consensus 167 ~A~~aykKaLeld-P-~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALELD-P-DNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhccC-C-CcHHHHHHHH
Confidence 9999999999999 7 5554444443
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.83 E-value=0.00081 Score=52.46 Aligned_cols=114 Identities=18% Similarity=0.165 Sum_probs=64.2
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHH
Q 048364 217 ISWTALICGSAHRGYSEDALSLFEMMQATGVKPN--EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294 (400)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 294 (400)
..+..+...+...|++++|...|++.......+. ...+..+..++.+.|++++|...+++..+. .+.+...+..+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 3455566666667777777777776665432221 245556666666667777777766666632 122344455555
Q ss_pred HHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 295 DLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
.+|...|+...+..-++.. ...+++|.+++++....+ |
T Consensus 114 ~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~-p 151 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLA-P 151 (172)
T ss_pred HHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhC-c
Confidence 5565555544443222211 012567778888877777 5
No 169
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.00087 Score=57.28 Aligned_cols=157 Identities=15% Similarity=0.033 Sum_probs=106.5
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhhHHHHHHHhhhhcCCCCChhhH-----------
Q 048364 224 CGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA--CVHTGLVDEGRKYFKMIDEEYDLEPRIQHY----------- 290 (400)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------- 290 (400)
.++.-.|++++|..+-....+.. ++ ..+...+++ +--.++.+.+...|++.. .+.|+...-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHH
Confidence 44566788888877766665542 11 123333333 334567777877777776 334443221
Q ss_pred --HHHHHHHHhcCChHHHHHHHHhc-cCC-----ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHH
Q 048364 291 --GCMVDLFGKAGFLEEAYEVIRTM-RLE-----PNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362 (400)
Q Consensus 291 --~~l~~~~~~~g~~~~a~~~~~~~-~~~-----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 362 (400)
..=..-..+.|++.+|.+.|.+. ++. |+...|.....+..+.|+..+|+.-.+++.+.+ + .-...+..-.
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~-syikall~ra 328 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-S-SYIKALLRRA 328 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-H-HHHHHHHHHH
Confidence 11122345778999999999887 444 456677777778889999999999999999888 6 5677777788
Q ss_pred HHhhcccchHHHHHHHHHHhcccccc
Q 048364 363 DLYTMNEKWEGAERVRKLMLNQNVRK 388 (400)
Q Consensus 363 ~~~~~~g~~~~a~~~~~~m~~~~~~~ 388 (400)
.++...++|++|.+-+++..+..-.+
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q~~~s~ 354 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQLEKDC 354 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 88888899999999888876544333
No 170
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.82 E-value=0.0021 Score=47.97 Aligned_cols=90 Identities=10% Similarity=-0.038 Sum_probs=49.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048364 190 ILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266 (400)
Q Consensus 190 ~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 266 (400)
.+...+...|++++|.++|+.+.. | +..-|-.|..++...|++++|+..|.......+ -|...+-.+..++...|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCC
Confidence 344445556666666666665543 2 233445555555566666666666666555432 244555555556666666
Q ss_pred hhhHHHHHHHhhhh
Q 048364 267 VDEGRKYFKMIDEE 280 (400)
Q Consensus 267 ~~~a~~~~~~~~~~ 280 (400)
.+.|.+.|+.....
T Consensus 119 ~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 119 VCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666655543
No 171
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.80 E-value=2.9e-05 Score=40.84 Aligned_cols=31 Identities=3% Similarity=0.145 Sum_probs=28.0
Q ss_pred hhHHHHHHHhcccchhHHHHHHHHHHHHhCc
Q 048364 17 FSILHILKSCTHFNNLTVIHHLHSHILKLGF 47 (400)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 47 (400)
.+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998774
No 172
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.80 E-value=0.014 Score=55.16 Aligned_cols=55 Identities=15% Similarity=0.098 Sum_probs=32.0
Q ss_pred HHHhcCChHHHHHHHHh-c-cCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 296 LFGKAGFLEEAYEVIRT-M-RLEP--NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 296 ~~~~~g~~~~a~~~~~~-~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
.+-..|++++|.+++.. . ..-+ +...-+.-+..+...+++.+..++..++...+ +
T Consensus 199 iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~-~ 257 (932)
T KOG2053|consen 199 ILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG-N 257 (932)
T ss_pred HHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC-C
Confidence 34456677777777732 2 1111 22333444556666777777777777777777 5
No 173
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.77 E-value=0.026 Score=50.44 Aligned_cols=365 Identities=11% Similarity=0.113 Sum_probs=194.3
Q ss_pred CCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH--HhCCHHHHHHH----HhhCC-----C-CC
Q 048364 13 PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY--VVTSFGFARKL----FDELP-----E-RN 80 (400)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~g~~~~a~~~----~~~~~-----~-~~ 80 (400)
+-++..|..-++.-.+..+++....+|.+.+..-+ +...|...+.-. ..|+...++.. |+-.. + .+
T Consensus 50 P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s 127 (656)
T KOG1914|consen 50 PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKS 127 (656)
T ss_pred CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCccc
Confidence 33567788889999999999999999999887654 466677777766 44544442222 22111 1 23
Q ss_pred hhhHHHHHHH---------HHcCCChHHHHHHHhhCCC-C---------ChhhHHHHHHH-------HHhcCCcchHHHH
Q 048364 81 AVTWNTMIKG---------YSKSGNVCEARDFFERMPL-R---------NVASWSAMIAA-------YLNAGAYDPGLKL 134 (400)
Q Consensus 81 ~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~-~---------~~~~~~~l~~~-------~~~~g~~~~a~~~ 134 (400)
-..|+..+.. +..+.+++...++|+++.. | |-.+|..=|+. --+...+..|.++
T Consensus 128 ~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~ 207 (656)
T KOG1914|consen 128 YSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRV 207 (656)
T ss_pred chhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 4456665543 4456678888889998762 2 21222221111 1123456677777
Q ss_pred HHHHHh-cCCCC------CCHHH---------HHHHHHHhhcccchh-------hhhhhhhhhH-HHhccccchHHHH--
Q 048364 135 FREMIS-NEGLT------PDQMT---------IGAVLSGCSHLGSVG-------LLMGKSAHGF-IVKNEWELNEQIA-- 188 (400)
Q Consensus 135 ~~~m~~-~~~~~------p~~~~---------~~~ll~~~~~~~~~~-------~~~a~~~~~~-~~~~~~~~~~~~~-- 188 (400)
+++... -.|+. |...| |-.+|.- -+.+... .-...-++++ +.-.+..|+....
T Consensus 208 ~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s 286 (656)
T KOG1914|consen 208 YQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYS 286 (656)
T ss_pred HHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 776642 11221 11111 2222211 1111110 0001111111 1112222222111
Q ss_pred ---HHHHHHHHhcCC-------HHHHHHHHHhccC----CCcccHHHHHHHHH---hCCChhhHHHHHHHHHHC-CCCCC
Q 048364 189 ---TILVDMYAKCGF-------LKYALMVFELMEE----RNVISWTALICGSA---HRGYSEDALSLFEMMQAT-GVKPN 250 (400)
Q Consensus 189 ---~~l~~~~~~~g~-------~~~A~~~~~~~~~----~~~~~~~~l~~~~~---~~~~~~~a~~~~~~m~~~-~~~p~ 250 (400)
....+.+...|+ .+++..+++.... .+...|..+...-- ...+.+....++++++.. ...|+
T Consensus 287 ~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t 366 (656)
T KOG1914|consen 287 MYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT 366 (656)
T ss_pred HHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc
Confidence 011122333333 3444445544432 22233333322111 111355566666666543 23333
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHH-HHHHHHH
Q 048364 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVI-IWGSFLA 327 (400)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~-~~~~l~~ 327 (400)
.+|..++....+..-+..|..+|.++.+. +..+ ++.++++++..|| .++..-|.++|+-- ..-+|.. --...+.
T Consensus 367 -Lv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~Yld 443 (656)
T KOG1914|consen 367 -LVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLD 443 (656)
T ss_pred -eehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 45666777777777788888888888755 4334 6666777777665 45677788888754 2223333 3355666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC-CCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 328 ACKEHKQFDMAERVIKQALRMVK-PENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
-+...++-..+..+|++.+.... +......|..++..-..-|+.+.+.++-+++..
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 67777888888888888887732 323456777777777777888877777666543
No 174
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.76 E-value=0.0074 Score=46.00 Aligned_cols=128 Identities=9% Similarity=0.022 Sum_probs=82.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc---cHHHH
Q 048364 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP---NVIIW 322 (400)
Q Consensus 247 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p---~~~~~ 322 (400)
..|+...-..|..++.+.|+..+|...|++... .-+..|....-.+.++....+++..|...++++ ...| +..+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 356666666677777777888888888877773 234456666777777777777888887777776 2122 11223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHH
Q 048364 323 GSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVR 378 (400)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 378 (400)
-.+.+.+...|++.+|+.-|+...+.- | ++..-......+.++|+..++..-+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~y-p--g~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYY-P--GPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhC-C--CHHHHHHHHHHHHHhcchhHHHHHH
Confidence 345677777788888888888877776 4 4444444445566666666554433
No 175
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.75 E-value=0.00019 Score=45.56 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=43.7
Q ss_pred HHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 293 MVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
+...+...|++++|.+.|++. ...| +...+..+..++...|++++|...++++++.. |
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~-P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD-P 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-c
Confidence 456677888888888888887 4455 55677777888888888888888888888877 6
No 176
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.74 E-value=0.0018 Score=59.52 Aligned_cols=135 Identities=14% Similarity=0.048 Sum_probs=89.4
Q ss_pred CCcccHHHHHHHHHhC-----CChhhHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC--------ChhhHHHHHHHhhh
Q 048364 214 RNVISWTALICGSAHR-----GYSEDALSLFEMMQATGVKPNE-MTFTGVLTACVHTG--------LVDEGRKYFKMIDE 279 (400)
Q Consensus 214 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~ 279 (400)
.+...|...+.+.... ++.+.|..+|++..+. .|+- ..+..+..++.... ++..+.+..+....
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4667788887765432 2366888999988886 4553 44444433332221 12233333333221
Q ss_pred hcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 280 EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
......+...|..+.......|++++|...+++. ...|+...|..+...+...|+.++|...++++...+ |
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~-P 484 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR-P 484 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C
Confidence 1112334566777766667788999999999888 677888888888888999999999999999998888 6
No 177
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.73 E-value=6.9e-05 Score=48.15 Aligned_cols=51 Identities=20% Similarity=0.383 Sum_probs=30.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 331 EHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 331 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
..|++++|+.+|+++.... | .+..+...++.+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-P-DNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-T-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556666666666666666 5 5566666666666666666666666665554
No 178
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.73 E-value=0.00061 Score=57.67 Aligned_cols=143 Identities=15% Similarity=0.189 Sum_probs=103.8
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHH
Q 048364 217 ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA-CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295 (400)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (400)
.+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 357788888888888999999999998543 2234444444444 33356777799999999974 4567778888999
Q ss_pred HHHhcCChHHHHHHHHhc--cCCccH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHh
Q 048364 296 LFGKAGFLEEAYEVIRTM--RLEPNV---IIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365 (400)
Q Consensus 296 ~~~~~g~~~~a~~~~~~~--~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 365 (400)
.+.+.|+.+.|..+|++. .+.++. ..|...+..=.+.|+.+.+..+.+++.+.. | +......++.-|
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~-~--~~~~~~~f~~ry 150 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF-P--EDNSLELFSDRY 150 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT-T--TS-HHHHHHCCT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-h--hhhHHHHHHHHh
Confidence 999999999999999998 333333 489999999999999999999999999987 6 344444444444
No 179
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.73 E-value=0.00049 Score=56.36 Aligned_cols=150 Identities=14% Similarity=0.103 Sum_probs=104.4
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCC
Q 048364 224 CGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGF 302 (400)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 302 (400)
.-+.+.+++++|+..|.+.++.. +-|.+.|..-..+|++.|.++.|++=.+... .+.| -..+|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCc
Confidence 44678899999999999999873 3367778888999999999999998888777 3345 35789999999999999
Q ss_pred hHHHHHHHHhc-cCCccHHHHHHHHHHHH-hcCCHH---HHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHH
Q 048364 303 LEEAYEVIRTM-RLEPNVIIWGSFLAACK-EHKQFD---MAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERV 377 (400)
Q Consensus 303 ~~~a~~~~~~~-~~~p~~~~~~~l~~~~~-~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 377 (400)
+++|.+.|++. .+.|+-.+|-.=+...- +.+... .+...++-.-..+.++.....|. ...-.-......
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s~~~------~~l~nnp~l~~~ 238 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRSMFN------GDLMNNPQLMQL 238 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchhhhc------cccccCHHHHHH
Confidence 99999999998 88998887765554432 233322 44444555545553212222222 222333445555
Q ss_pred HHHHhc
Q 048364 378 RKLMLN 383 (400)
Q Consensus 378 ~~~m~~ 383 (400)
...|..
T Consensus 239 ~~~m~~ 244 (304)
T KOG0553|consen 239 ASQMMK 244 (304)
T ss_pred HHHHhh
Confidence 666665
No 180
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.73 E-value=0.0016 Score=55.12 Aligned_cols=143 Identities=13% Similarity=0.066 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccCCCcc---cHHHHHHH-HHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048364 186 QIATILVDMYAKCGFLKYALMVFELMEERNVI---SWTALICG-SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261 (400)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 261 (400)
.+|..++...-+.+..+.|..+|.+..+.... .|-..... |...++.+.|.++|+...+. ...+...+...+.-+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 46788888888888899999999999874433 34444344 33357777799999998876 455777788888888
Q ss_pred HhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHHHHHHHHHHH
Q 048364 262 VHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWGSFLAAC 329 (400)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~l~~~~ 329 (400)
.+.++.+.|..+|++......... ....|...++.=.+.|+.+.+.++.+++ ..-|+......++.-|
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSDRY 150 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHCCT
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 999999999999999985322112 2357888888888999999999999888 4445544444444333
No 181
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.68 E-value=0.013 Score=44.76 Aligned_cols=133 Identities=9% Similarity=-0.006 Sum_probs=96.2
Q ss_pred CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHH
Q 048364 214 RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293 (400)
Q Consensus 214 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 293 (400)
|++.....|..++.+.|+..+|...|++....-..-|......+.++....+++..|...++.+.+...-.-++...-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 45556667888889999999999999988766556677888888888888999999999999887532111234455567
Q ss_pred HHHHHhcCChHHHHHHHHhc-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048364 294 VDLFGKAGFLEEAYEVIRTM-RLEPNVIIWGSFLAACKEHKQFDMAERVIKQAL 346 (400)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 346 (400)
.+.|...|++.+|+..|+.. ..-|+...-......+.++|+.+++..-+..+.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 88899999999999999887 555655544444455667776666654444433
No 182
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.68 E-value=0.00076 Score=59.55 Aligned_cols=115 Identities=12% Similarity=0.022 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhcc--ccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC----CCcccH
Q 048364 146 PDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE--WELNEQIATILVDMYAKCGFLKYALMVFELMEE----RNVISW 219 (400)
Q Consensus 146 p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~ 219 (400)
.+...+..+++.+....+++. +..++....... ...-..+..+++..|.+.|..+.+..+++.-.. ||..++
T Consensus 64 vS~~dld~fvn~~~~~~~~d~--~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDE--VEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHH--HHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 344444455555555444444 444444433331 111222333444444444444444444443332 444444
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048364 220 TALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACV 262 (400)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 262 (400)
|.+|..+.+.|++..|.++..+|...+...+..|+...+.+|.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 5555555555555444444444444443334444444444333
No 183
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.63 E-value=0.012 Score=51.12 Aligned_cols=166 Identities=14% Similarity=0.076 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccCC-C------cccHHHHHHHHHh---CCChhhHHHHHHHHHHCCCCCCHHHH
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFELMEER-N------VISWTALICGSAH---RGYSEDALSLFEMMQATGVKPNEMTF 254 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~ 254 (400)
..+...++-+|....+++...++.+.+... + ...-...+-++.+ .|+.++|+.++..+......+++.+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 334445666788899999999999998863 1 1222234455666 89999999999997666677888888
Q ss_pred HHHHHHHHh---------cCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChH----HHHHHH---Hhc-----
Q 048364 255 TGVLTACVH---------TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLE----EAYEVI---RTM----- 313 (400)
Q Consensus 255 ~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~a~~~~---~~~----- 313 (400)
..+.+.|-+ ....++|+..|.+.- .+.|+...--.++..+...|... +..++- ..+
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 888877643 223667777777655 34455544333444444444322 222222 111
Q ss_pred --cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc
Q 048364 314 --RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355 (400)
Q Consensus 314 --~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 355 (400)
.-..+-..+.+++.++.-.|++++|.+..++|.+.. | |..
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~-~-~~W 339 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK-P-PAW 339 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-C-cch
Confidence 123466677888999999999999999999999887 6 443
No 184
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.63 E-value=0.00026 Score=45.59 Aligned_cols=64 Identities=19% Similarity=0.237 Sum_probs=49.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcC
Q 048364 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHK-QFDMAERVIKQALRMV 349 (400)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~ 349 (400)
+...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|+..+++.++..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 3456777788888888888888888877 4455 5557777888888888 6888888888888766
No 185
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.58 E-value=0.004 Score=57.34 Aligned_cols=133 Identities=13% Similarity=0.033 Sum_probs=96.2
Q ss_pred CCCCCHHHHHHHHHHHHhcC-----ChhhHHHHHHHhhhhcCCCCC-hhhHHHHHHHHHhc--------CChHHHHHHHH
Q 048364 246 GVKPNEMTFTGVLTACVHTG-----LVDEGRKYFKMIDEEYDLEPR-IQHYGCMVDLFGKA--------GFLEEAYEVIR 311 (400)
Q Consensus 246 ~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~a~~~~~ 311 (400)
+.+.+...|...+++..... +.+.|..+|+++.+ ..|+ ...|..+..++... .+...+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 34567788988888855432 36789999999984 3565 34455444444322 12334444444
Q ss_pred hc-c---CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 312 TM-R---LEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 312 ~~-~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
+. . ...+...|..+.......|++++|...++++++.+ | +...|..++.++...|+.++|.+.+++....
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~-p--s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE-M--SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 43 1 23355678777777777899999999999999999 6 6889999999999999999999999988763
No 186
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.57 E-value=0.0018 Score=50.31 Aligned_cols=60 Identities=10% Similarity=0.065 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHhh
Q 048364 219 WTALICGSAHRGYSEDALSLFEMMQATGVKP--NEMTFTGVLTACVHTGLVDEGRKYFKMID 278 (400)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (400)
|..+...+...|++++|+..|++.......| ...++..+..++...|++++|...++...
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444445555555555555555554432111 12345555555555566666666555555
No 187
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.54 E-value=0.0023 Score=54.86 Aligned_cols=131 Identities=11% Similarity=0.010 Sum_probs=79.4
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHhhh---hcC-CCCCh
Q 048364 217 ISWTALICGSAHRGYSEDALSLFEMMQ----ATGVK-PNEMTFTGVLTACVHTGLVDEGRKYFKMIDE---EYD-LEPRI 287 (400)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~-~~~~~ 287 (400)
..|..|...|.-.|+++.|+..-+.-. +.|-+ .....+..+..++.-.|+++.|.+.|+.... +.| -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 355666666666777777776544321 22221 1234566777777778888888877764431 111 12234
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhc--------cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048364 288 QHYGCMVDLFGKAGFLEEAYEVIRTM--------RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALR 347 (400)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~--------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (400)
.+..+|...|.-..++++|+.++.+- ...-....+.+|..+|...|..++|+.+.+..++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45556777777777788887777654 2222445677777788777877777777665554
No 188
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.54 E-value=0.00042 Score=44.43 Aligned_cols=48 Identities=17% Similarity=0.155 Sum_probs=21.5
Q ss_pred cCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc
Q 048364 264 TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
.|++++|.++|+.+... .+.+...+..++.+|.+.|++++|.++++++
T Consensus 4 ~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp TTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44445555555544432 1223344444445555555555555555544
No 189
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.0059 Score=49.20 Aligned_cols=25 Identities=16% Similarity=0.025 Sum_probs=14.8
Q ss_pred hhhhHHHHHH-HhCCHHHHHHHHhhC
Q 048364 52 YVATSLLHEY-VVTSFGFARKLFDEL 76 (400)
Q Consensus 52 ~~~~~l~~~~-~~g~~~~a~~~~~~~ 76 (400)
..|+.-+.++ +....++|..-++..
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f 95 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPF 95 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhh
Confidence 3455555566 777777766655443
No 190
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.53 E-value=0.00031 Score=45.80 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=36.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 327 AACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 327 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
..|.+.+++++|...+++++..+ | .++..+...+.++...|++++|.+.++...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-P-DDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-c-ccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34566666666666666666666 6 5666666666666666666666666666654
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.51 E-value=0.0069 Score=43.52 Aligned_cols=108 Identities=16% Similarity=0.134 Sum_probs=64.2
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHH
Q 048364 222 LICGSAHRGYSEDALSLFEMMQATGVKPN--EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFG 298 (400)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 298 (400)
+..++-..|+.++|+.+|++....|.... ...+-.+..++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44566677888888888888877776544 23455666677778888888888887775321101 1222222344666
Q ss_pred hcCChHHHHHHHHhccCCccHHHHHHHHHHHH
Q 048364 299 KAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330 (400)
Q Consensus 299 ~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~ 330 (400)
..|+.++|++.+-.. +.++...|..-|..|.
T Consensus 87 ~~gr~~eAl~~~l~~-la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA-LAETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 778888877766543 1122334544444443
No 192
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.50 E-value=0.0015 Score=45.21 Aligned_cols=80 Identities=15% Similarity=0.141 Sum_probs=59.5
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhcCCC-CCCHHHHHHHHHHhhcccc--------hhhhhhhhhhhHHHhccccchH
Q 048364 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGL-TPDQMTIGAVLSGCSHLGS--------VGLLMGKSAHGFIVKNEWELNE 185 (400)
Q Consensus 115 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~ll~~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~ 185 (400)
....|..+...+++.....+|+.++ +.|+ .|+..+|+.++.+.++..- .-. ...+++.+...++.|+.
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslk-RN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~--LLtvYqDiL~~~lKP~~ 104 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLK-RNGITLPSVELYNKVLKSIAKRELDSEDIENKLTN--LLTVYQDILSNKLKPND 104 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHH-hcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHH--HHHHHHHHHHhccCCcH
Confidence 3445566666799999999999998 7788 8999999999988766542 122 45567777777788888
Q ss_pred HHHHHHHHHHHh
Q 048364 186 QIATILVDMYAK 197 (400)
Q Consensus 186 ~~~~~l~~~~~~ 197 (400)
.+|+.++..+.+
T Consensus 105 etYnivl~~Llk 116 (120)
T PF08579_consen 105 ETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHH
Confidence 888877766544
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.50 E-value=0.0032 Score=45.23 Aligned_cols=92 Identities=13% Similarity=0.023 Sum_probs=55.5
Q ss_pred HHHHHHhcCChhhHHHHHHHhhhhcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc----HHHHHHHHHHH
Q 048364 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPR--IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN----VIIWGSFLAAC 329 (400)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~----~~~~~~l~~~~ 329 (400)
+..++-..|+.++|+.+|++... .|+... ...+-.+...+...|++++|..++++. .-.|+ ......+..++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~-~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALA-AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 34455667777777777777774 354443 334556666777777777777777776 22233 12222233456
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 048364 330 KEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 330 ~~~~~~~~a~~~~~~~~~~~ 349 (400)
...|+.++|...+-......
T Consensus 86 ~~~gr~~eAl~~~l~~la~~ 105 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAET 105 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHH
Confidence 66777777777776655433
No 194
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.50 E-value=0.041 Score=45.46 Aligned_cols=50 Identities=18% Similarity=0.073 Sum_probs=22.8
Q ss_pred HHHcCCChHHHHHHHhhCCC--CC-hhh---HHHHHHHHHhcCCcchHHHHHHHHH
Q 048364 90 GYSKSGNVCEARDFFERMPL--RN-VAS---WSAMIAAYLNAGAYDPGLKLFREMI 139 (400)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~--~~-~~~---~~~l~~~~~~~g~~~~a~~~~~~m~ 139 (400)
.+.+.|++++|++.|+.+.. |+ ... .-.++.+|.+.+++++|...+++..
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi 96 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI 96 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 33445555555555555441 11 111 1223344555555555555555555
No 195
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.48 E-value=0.088 Score=48.76 Aligned_cols=121 Identities=10% Similarity=0.030 Sum_probs=79.0
Q ss_pred CCCchhHHHHHHHhcccchhHHHHHHHHHHHHh-Cccc--------chhhhhHHHHHHHhCCHHHHHHHHhhCCCCChhh
Q 048364 13 PSDSFSILHILKSCTHFNNLTVIHHLHSHILKL-GFIS--------HVYVATSLLHEYVVTSFGFARKLFDELPERNAVT 83 (400)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~ 83 (400)
.|.+..|..+.+.....-.++.|...|-+.... |++. +...-.+=+.+ -.|++++|.+++-++.++|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~-~~g~feeaek~yld~drrDL-- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA-FYGEFEEAEKLYLDADRRDL-- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh-hhcchhHhhhhhhccchhhh--
Confidence 577888888888877777777777777554332 2211 00011111111 45889999999988877764
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhCCCC-----ChhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 048364 84 WNTMIKGYSKSGNVCEARDFFERMPLR-----NVASWSAMIAAYLNAGAYDPGLKLFREMI 139 (400)
Q Consensus 84 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 139 (400)
.+....+.|++-...++++.-..- -..+|+.+...+.....|++|.+.|..-.
T Consensus 766 ---Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 766 ---AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred ---hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356667778888888877664322 23578888888888888888888876553
No 196
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.46 E-value=0.00061 Score=58.20 Aligned_cols=133 Identities=12% Similarity=0.024 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHH---hhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-------c-CCccH
Q 048364 252 MTFTGVLTACVHTGLVDEGRKYFKM---IDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-------R-LEPNV 319 (400)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~---~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~-~~p~~ 319 (400)
..|..|...|.-.|+++.|+...+. +.+++|-+. ....+..+..++.-.|+++.|.+.|+.. + .....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3455566666667899999876653 222344333 3457888999999999999999988865 2 12244
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 320 IIWGSFLAACKEHKQFDMAERVIKQALR----MVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
.+..+|..+|.-..++++|+.++.+-+. .+.......++..|..+|...|..++|+.+.+.-.+.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4566778888888899999988776443 2212256789999999999999999999887766543
No 197
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.098 Score=48.80 Aligned_cols=131 Identities=11% Similarity=0.098 Sum_probs=84.7
Q ss_pred HhCCCCCCchhHHH-----HHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhC---CHHHHHHHHhhCCC
Q 048364 8 HRQSVPSDSFSILH-----ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVT---SFGFARKLFDELPE 78 (400)
Q Consensus 8 ~~~g~~p~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g---~~~~a~~~~~~~~~ 78 (400)
.+-|++.+..-|.. ++.-+...+.+..|.++-..+-..-... ..++......+ +.. +.+-+..+-+++..
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 45588887776655 4556667788999999988774432222 56677777666 432 23344444455554
Q ss_pred --CChhhHHHHHHHHHcCCChHHHHHHHhhCCCC--------ChhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 048364 79 --RNAVTWNTMIKGYSKSGNVCEARDFFERMPLR--------NVASWSAMIAAYLNAGAYDPGLKLFREMI 139 (400)
Q Consensus 79 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 139 (400)
....+|..+..-....|+.+-|..+++.=+.. +..-+...+.-..+.|+.+-...++-.+.
T Consensus 503 ~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 503 KLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred cCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 45567888888888899999999888753311 22344455666677777777777766664
No 198
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.38 E-value=0.002 Score=53.64 Aligned_cols=96 Identities=10% Similarity=0.055 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc----HHHHHHHHH
Q 048364 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN----VIIWGSFLA 327 (400)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~----~~~~~~l~~ 327 (400)
|...+....+.|++++|...|+.+.+.+.-.+ ....+..+..+|...|++++|...|+.+ ...|+ ...+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333444556666666655554321110 0133444555555556666665555555 21221 223333344
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 048364 328 ACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
.+...|+.++|...++++++..
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 4555555666666666555555
No 199
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.35 E-value=0.0019 Score=50.59 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=41.8
Q ss_pred HHHHhc--cCCCcccHHHHHHHHHh-----CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048364 206 MVFELM--EERNVISWTALICGSAH-----RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263 (400)
Q Consensus 206 ~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 263 (400)
..|+.. ...+-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+=+
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 344444 33566667777776654 46677777788889999999999999999987754
No 200
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.35 E-value=0.082 Score=45.47 Aligned_cols=118 Identities=19% Similarity=0.183 Sum_probs=62.7
Q ss_pred cchhHHHHHHHHHHHHhCcccchhhhhHHHHHH---HhCCHHHHHHHHhhCCC-CChhh--HHHHHHHHHcCCChHHHHH
Q 048364 29 FNNLTVIHHLHSHILKLGFISHVYVATSLLHEY---VVTSFGFARKLFDELPE-RNAVT--WNTMIKGYSKSGNVCEARD 102 (400)
Q Consensus 29 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~g~~~~a~~~~~~~~~-~~~~~--~~~l~~~~~~~~~~~~a~~ 102 (400)
.|+-..|.++-.+..+. +..|..-.-.++.+- -.|+++.|.+-|+.|.. |.... ...|.-.--+.|..+.|..
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~ 175 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARH 175 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHH
Confidence 45555666555443321 222333333333333 66777777777777763 32211 2222222345666666666
Q ss_pred HHhhCCC--C-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCC
Q 048364 103 FFERMPL--R-NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPD 147 (400)
Q Consensus 103 ~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~ 147 (400)
.-++... | -...+.+.+...+..|+|+.|+++.+.-+...-+.++
T Consensus 176 yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~ 223 (531)
T COG3898 176 YAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKD 223 (531)
T ss_pred HHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchh
Confidence 6655432 2 3346666777777777777777777766533334444
No 201
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.14 Score=47.85 Aligned_cols=316 Identities=12% Similarity=0.055 Sum_probs=182.8
Q ss_pred HhCcccchhhhh-----HHHHHH-HhCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHcCCC---hHHHHHHHhhCCC--
Q 048364 44 KLGFISHVYVAT-----SLLHEY-VVTSFGFARKLFDELPERN---AVTWNTMIKGYSKSGN---VCEARDFFERMPL-- 109 (400)
Q Consensus 44 ~~~~~~~~~~~~-----~l~~~~-~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~-- 109 (400)
..|+..+..-|. .++.-+ ..+.+..|+++-+.+..|. ...|.....-+.+..+ -+-+..+=+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 556655554443 345555 7888999999998888765 4556666666665532 2334444445555
Q ss_pred CChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCC-CC---CHHHHHHHHHHhhcccchhhhhhhhhhhHHHhcc-----
Q 048364 110 RNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL-TP---DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE----- 180 (400)
Q Consensus 110 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-~p---~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~----- 180 (400)
.+..+|..+.+-....|+.+-|..+++.=. ..+. .| +..-+..-+.-+.+.|+.+. ...++-.+...-
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~-~~~~qV~lLL~m~~~~~AL~kaies~d~~L--i~~Vllhlk~~~~~s~l 581 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEP-RSGEQVPLLLKMKDSSLALKKAIESGDTDL--IIQVLLHLKNKLNRSSL 581 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCC-CccchhHHHhccchHHHHHHHHHhcCCchh--HHHHHHHHHHHHHHHHH
Confidence 466788888888888999999988875432 1111 11 22345566777788888877 666555544421
Q ss_pred ------ccchHHHHHHHHH--------HHHhcCCHHHHHHHHH--hccC-----CCcccHHHHHHHHHhCCChh------
Q 048364 181 ------WELNEQIATILVD--------MYAKCGFLKYALMVFE--LMEE-----RNVISWTALICGSAHRGYSE------ 233 (400)
Q Consensus 181 ------~~~~~~~~~~l~~--------~~~~~g~~~~A~~~~~--~~~~-----~~~~~~~~l~~~~~~~~~~~------ 233 (400)
.+.....|.-++. .+.+.++-..+...|. .... +-..........+.+.....
T Consensus 582 ~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ 661 (829)
T KOG2280|consen 582 FMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKAL 661 (829)
T ss_pred HHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHH
Confidence 1111222222221 0011111111111111 1000 11111222333444433311
Q ss_pred ----hHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 048364 234 ----DALSLFEMMQA-TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308 (400)
Q Consensus 234 ----~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 308 (400)
+-+.+.+.+.. .|.....-+.+--+.-+...|+..+|.++-.+.+ -||-..|---+.+++..+++++-++
T Consensus 662 ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLek 736 (829)
T KOG2280|consen 662 EDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEK 736 (829)
T ss_pred HHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHH
Confidence 11122222222 2333344455666667778888888888877665 4788888888889999999998888
Q ss_pred HHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHH
Q 048364 309 VIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKL 380 (400)
Q Consensus 309 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 380 (400)
+-+... .+.-|.-+..+|.+.|+.++|.+++-+. + +.. ..+.+|.+.|++.+|.++--+
T Consensus 737 fAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv-----~-~l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 737 FAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRV-----G-GLQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHhccC---CCCCchhHHHHHHhcccHHHHhhhhhcc-----C-ChH----HHHHHHHHhccHHHHHHHHHH
Confidence 887762 1334555788899999999998877654 2 111 567788888888888775443
No 202
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.33 E-value=0.00078 Score=50.95 Aligned_cols=70 Identities=17% Similarity=0.230 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHh-----ccccccccCc
Q 048364 321 IWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML-----NQNVRKARGS 392 (400)
Q Consensus 321 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~~~ 392 (400)
....++..+...|++++|..++++++... | .+...+..++.+|...|+..+|.+.|+++. +.|+.|+|.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-P-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-T-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 45566777888899999999999999998 8 888899999999999999999999888774 3578777754
No 203
>PRK15331 chaperone protein SicA; Provisional
Probab=97.29 E-value=0.0032 Score=47.28 Aligned_cols=84 Identities=10% Similarity=-0.014 Sum_probs=37.9
Q ss_pred HhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cC-CccHHHHHHHHHHHHhcCCHHHHH
Q 048364 262 VHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RL-EPNVIIWGSFLAACKEHKQFDMAE 339 (400)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~ 339 (400)
-..|++++|..+|..+..- + .-+..-+..|..++-..+++++|...|... -+ .-|...+-....++...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~-d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIY-D-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHh-C-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 3455555555555554421 1 123333444555555555555555555544 00 112222223344555555555555
Q ss_pred HHHHHHHH
Q 048364 340 RVIKQALR 347 (400)
Q Consensus 340 ~~~~~~~~ 347 (400)
..|+.++.
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 55555544
No 204
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.28 E-value=0.001 Score=44.00 Aligned_cols=58 Identities=14% Similarity=0.212 Sum_probs=27.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhc-------c-CCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048364 289 HYGCMVDLFGKAGFLEEAYEVIRTM-------R-LEPN-VIIWGSFLAACKEHKQFDMAERVIKQAL 346 (400)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 346 (400)
+++.+...|...|++++|++.|++. + ..|+ ..++..+..++...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444455555555555555554443 1 1111 2344555555555555555555555544
No 205
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.25 E-value=0.071 Score=48.86 Aligned_cols=91 Identities=12% Similarity=0.050 Sum_probs=48.2
Q ss_pred HhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChh
Q 048364 209 ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQ 288 (400)
Q Consensus 209 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 288 (400)
.++...+..+...+...+.+...+.-|-++|.+|-+. ..+++.+...++|++|..+-+... .+.||+
T Consensus 740 rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP---e~~~dV- 806 (1081)
T KOG1538|consen 740 RKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP---EFKDDV- 806 (1081)
T ss_pred hhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc---cccccc-
Confidence 3333344444555555555566666677777666432 345566667777777777666554 233443
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhc
Q 048364 289 HYGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
|....+-++...++++|.+.|.+.
T Consensus 807 -y~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 807 -YMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred -cchHHHHhhhhhhHHHHHHHHHHh
Confidence 333344444455555554444433
No 206
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.025 Score=46.86 Aligned_cols=101 Identities=12% Similarity=0.096 Sum_probs=80.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhc---CChHHHHHHHHhc-cCCc-cHHHH
Q 048364 248 KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA---GFLEEAYEVIRTM-RLEP-NVIIW 322 (400)
Q Consensus 248 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~-~~~p-~~~~~ 322 (400)
+-|...|-.|..+|...|+.+.|..-|.+..+- ..+++..+..+..++... ....++..+|+++ ...| |+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 337789999999999999999999999998853 344566666777765543 3456888999998 5566 56667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 323 GSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
..|...+...|++.+|...|+.|.+.. |
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l-p 258 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL-P 258 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC-C
Confidence 777888999999999999999999998 6
No 207
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.18 E-value=0.058 Score=43.32 Aligned_cols=167 Identities=11% Similarity=0.064 Sum_probs=94.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC--CC----cccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048364 190 ILVDMYAKCGFLKYALMVFELMEE--RN----VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263 (400)
Q Consensus 190 ~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 263 (400)
.....+...|++++|.+.|+.+.. |+ ....-.++.++.+.|+++.|...+++..+.-..-....+...+.+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 345556678888888888888875 32 124455677788888888888888887765222112222222222221
Q ss_pred cC-------------ChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHHH
Q 048364 264 TG-------------LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330 (400)
Q Consensus 264 ~~-------------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~ 330 (400)
.. ...+|.. .+..++.-|=......+|...+..+...--..- -.+...|.
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~----------------~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e-~~ia~~Y~ 152 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIE----------------EFEELIKRYPNSEYAEEAKKRLAELRNRLAEHE-LYIARFYY 152 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHH----------------HHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHH----------------HHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 11 1122222 233444444445555555555555421111111 12567789
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCc---hHHHHHHHHhhcccchHHHH
Q 048364 331 EHKQFDMAERVIKQALRMVKPENDG---GVFTLICDLYTMNEKWEGAE 375 (400)
Q Consensus 331 ~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~ 375 (400)
+.|.+..|..-++.+++.- | .+. .+...++.+|.+.|..+.+.
T Consensus 153 ~~~~y~aA~~r~~~v~~~y-p-~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIENY-P-DTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp CTT-HHHHHHHHHHHHHHS-T-TSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HcccHHHHHHHHHHHHHHC-C-CCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9999999999999999987 6 333 34567778888888877443
No 208
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.18 E-value=0.013 Score=48.86 Aligned_cols=94 Identities=10% Similarity=0.063 Sum_probs=61.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhc-cCCccH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CCchHHHHH
Q 048364 289 HYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNV----IIWGSFLAACKEHKQFDMAERVIKQALRMVKPE--NDGGVFTLI 361 (400)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~l 361 (400)
.|...+..+.+.|++++|...|+.+ ...|+. ..+--+..+|...|++++|...|+.+++.. |. ..+.++..+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-P~s~~~~dAl~kl 223 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-PKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhHHHHHH
Confidence 3444444445667777777777777 334432 345556677777788888888888777665 41 234455555
Q ss_pred HHHhhcccchHHHHHHHHHHhc
Q 048364 362 CDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 362 ~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
+.++...|++++|..+++++++
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 6677777788888877777664
No 209
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.17 E-value=0.019 Score=52.33 Aligned_cols=85 Identities=15% Similarity=0.098 Sum_probs=49.1
Q ss_pred HHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CCcc----------
Q 048364 150 TIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--RNVI---------- 217 (400)
Q Consensus 150 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~---------- 217 (400)
+...+..-+.+...+.. |.++|..+-+. ..+++.....++|++|.++-++.++ +|+.
T Consensus 749 ~l~~~a~ylk~l~~~gL--AaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGL--AAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccch--HHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhh
Confidence 34333333444444444 55555544332 2355666677777777777777765 2321
Q ss_pred -cHHHHHHHHHhCCChhhHHHHHHHHHHC
Q 048364 218 -SWTALICGSAHRGYSEDALSLFEMMQAT 245 (400)
Q Consensus 218 -~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 245 (400)
-|...-.+|.+.|+..+|..+++++...
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1223335677888888888888877554
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.15 E-value=0.0031 Score=41.01 Aligned_cols=56 Identities=21% Similarity=0.358 Sum_probs=41.4
Q ss_pred HHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 295 DLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
..|.+.+++++|.++++.+ ...| +...+.....++.+.|++++|...+++..+.. |
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~-p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS-P 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC-C
Confidence 4567778888888888877 4445 44456667777788888888888888888777 6
No 211
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.14 E-value=0.14 Score=44.12 Aligned_cols=112 Identities=13% Similarity=0.196 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHHHh
Q 048364 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKE 331 (400)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~ 331 (400)
.+.+..+.-|...|+...|.++-.+. + -|+...|...+.+|+..++|++-.++... +..+.-|..++.+|.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----K-VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 35555666677788877777665444 3 37888888889999999999888876553 2234667888899999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 332 HKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 332 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
.|+..+|..++.++ + + ..-+..|.+.|+|.+|.+.--+..
T Consensus 250 ~~~~~eA~~yI~k~-----~--~----~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 250 YGNKKEASKYIPKI-----P--D----EERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred CCCHHHHHHHHHhC-----C--h----HHHHHHHHHCCCHHHHHHHHHHcC
Confidence 99998888887762 3 1 445567788888888876644443
No 212
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.14 E-value=0.14 Score=44.08 Aligned_cols=254 Identities=15% Similarity=0.068 Sum_probs=161.3
Q ss_pred CCCCchhHHHHHHHhc--ccchhHHHHHHHHHHHHhCcccchh--hhhHHHHHH-HhCCHHHHHHHHhhCCC--C-Chhh
Q 048364 12 VPSDSFSILHILKSCT--HFNNLTVIHHLHSHILKLGFISHVY--VATSLLHEY-VVTSFGFARKLFDELPE--R-NAVT 83 (400)
Q Consensus 12 ~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~-~~g~~~~a~~~~~~~~~--~-~~~~ 83 (400)
+.-|..-...|+.+-. -.|+.+.|.+-|+.|... |... -...|.-.- +.|+.+.|.++-+.... | -...
T Consensus 114 lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA 190 (531)
T COG3898 114 LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWA 190 (531)
T ss_pred hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchH
Confidence 4456666666766654 469999999999999762 2222 122233333 88999999999887764 2 4567
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhCC-----CCChh--hHHHHHHHHH---hcCCcchHHHHHHHHHhcCCCCCCHHH-HH
Q 048364 84 WNTMIKGYSKSGNVCEARDFFERMP-----LRNVA--SWSAMIAAYL---NAGAYDPGLKLFREMISNEGLTPDQMT-IG 152 (400)
Q Consensus 84 ~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~--~~~~l~~~~~---~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~ 152 (400)
+.+.+...|..|+++.|+++++.-. ++++. .-..|+.+-. -..+...|...-.+.. .+.||... -.
T Consensus 191 ~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~---KL~pdlvPaav 267 (531)
T COG3898 191 ARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEAN---KLAPDLVPAAV 267 (531)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh---hcCCccchHHH
Confidence 8899999999999999999998754 34432 1122222211 1234555555555444 56676543 23
Q ss_pred HHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHH----HHHHHhccCCCcccHHHHHHHHHh
Q 048364 153 AVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYA----LMVFELMEERNVISWTALICGSAH 228 (400)
Q Consensus 153 ~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~l~~~~~~ 228 (400)
.-.+++.+.|+..+ +-.+++.+-+....|+.. ++..+.+.|+.... .+-+..|+..+..+...+..+-..
T Consensus 268 ~AAralf~d~~~rK--g~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAld 341 (531)
T COG3898 268 VAARALFRDGNLRK--GSKILETAWKAEPHPDIA----LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALD 341 (531)
T ss_pred HHHHHHHhccchhh--hhhHHHHHHhcCCChHHH----HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHh
Confidence 34566778888888 888888888876666532 22234455653321 123445555666677777777777
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChhhHHHHHHHhhh
Q 048364 229 RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACV-HTGLVDEGRKYFKMIDE 279 (400)
Q Consensus 229 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 279 (400)
.|++..|..--+...+ ..|....|..+.+.-. ..|+-.++.+.+.+..+
T Consensus 342 a~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 342 AGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred ccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 8888777665554444 3677777777766543 44888888888777764
No 213
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.085 Score=42.84 Aligned_cols=133 Identities=10% Similarity=0.038 Sum_probs=98.8
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHH----
Q 048364 217 ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC---- 292 (400)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---- 292 (400)
..-+.++..+.-.|.+.-...++++..+...+-++.....+.+.-.+.|+.+.|..+|+...+..+ ..+....+.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHh
Confidence 345667777777888888999999998876666778888899999999999999999998775433 333333333
Q ss_pred -HHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 293 -MVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 293 -l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
....|.-++++..|...+.++ ...| |....|.=.-+..-.|+..+|.+.++.|.... |
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~-P 317 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD-P 317 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC-C
Confidence 334566778899999999888 2233 44455554555566789999999999999987 6
No 214
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.05 E-value=0.18 Score=43.94 Aligned_cols=166 Identities=13% Similarity=0.016 Sum_probs=108.5
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCChhhHHHHHHHhhhhcCCCCChhhHHH
Q 048364 219 WTALICGSAHRGYSEDALSLFEMMQATG---VKPNEMTFTGVLTACVH---TGLVDEGRKYFKMIDEEYDLEPRIQHYGC 292 (400)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 292 (400)
-..++-+|....+++..+++.+.+.... +.-+...-....-++.+ .|+.++|.+++..+... .-.+++.+|..
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL 222 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGL 222 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHH
Confidence 3345557999999999999999998752 11122222234445666 89999999999995533 55678888888
Q ss_pred HHHHHHh---------cCChHHHHHHHHhc-cCCccHHHHHHHHHHHHhcCCHH----HHHHHH----HHHHHcCC--CC
Q 048364 293 MVDLFGK---------AGFLEEAYEVIRTM-RLEPNVIIWGSFLAACKEHKQFD----MAERVI----KQALRMVK--PE 352 (400)
Q Consensus 293 l~~~~~~---------~g~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~----~a~~~~----~~~~~~~~--~~ 352 (400)
+++.|-. ....++|...|.+. .+.||...--.++..+...|... +..++- ....+++. +.
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 8877642 22477889999888 66676654333333333334211 222222 22223332 33
Q ss_pred CCchHHHHHHHHhhcccchHHHHHHHHHHhccc
Q 048364 353 NDGGVFTLICDLYTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 353 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 385 (400)
.+...+..++.++.-.|++++|.+..++|.+..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 566677788888999999999999999998753
No 215
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.04 E-value=0.28 Score=45.70 Aligned_cols=185 Identities=10% Similarity=0.048 Sum_probs=101.5
Q ss_pred cchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCC-----ChhhHHHHHHHHHcCCChHHHHH
Q 048364 29 FNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPER-----NAVTWNTMIKGYSKSGNVCEARD 102 (400)
Q Consensus 29 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~ 102 (400)
-|++++|.++|-.|-++. ..+... +.|++-...++++.-... -...|+.+...++....+++|.+
T Consensus 747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888876665543 235566 888888888887765432 23567888888888888888888
Q ss_pred HHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhcccc
Q 048364 103 FFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE 182 (400)
Q Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~ 182 (400)
.|..-.. . ...+.++.+..++++-..+...+ +-++...-.+...+.+.|-.++ |.+.+ ++.+.+
T Consensus 818 yY~~~~~--~---e~~~ecly~le~f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~q--AV~a~---Lr~s~p 881 (1189)
T KOG2041|consen 818 YYSYCGD--T---ENQIECLYRLELFGELEVLARTL------PEDSELLPVMADMFTSVGMCDQ--AVEAY---LRRSLP 881 (1189)
T ss_pred HHHhccc--h---HhHHHHHHHHHhhhhHHHHHHhc------CcccchHHHHHHHHHhhchHHH--HHHHH---HhccCc
Confidence 8766431 1 12345555555555544443333 2233334444555555555444 33222 111111
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccH--------------HHHHHHHHhCCChhhHHHHHHHHHH
Q 048364 183 LNEQIATILVDMYAKCGFLKYALMVFELMEERNVISW--------------TALICGSAHRGYSEDALSLFEMMQA 244 (400)
Q Consensus 183 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~l~~~~~~~~~~~~a~~~~~~m~~ 244 (400)
...+..+...++|.+|.++-+...-|.+.+. ---|..+.+.|++-+|-+++.+|.+
T Consensus 882 ------kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 882 ------KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 1233445555666666665554443322221 1124445666777667777766644
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.02 E-value=0.0015 Score=43.16 Aligned_cols=65 Identities=14% Similarity=0.201 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CC--CCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 319 VIIWGSFLAACKEHKQFDMAERVIKQALRMVK---PE--NDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
..+++.+...|...|++++|+..+++.++... +. ....++..++.+|...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34789999999999999999999999986521 10 1256888999999999999999999998764
No 217
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.99 E-value=0.011 Score=43.02 Aligned_cols=51 Identities=8% Similarity=0.169 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHH
Q 048364 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297 (400)
Q Consensus 247 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (400)
..|+..+..+++.+|+..+++..|.++.+...+.++++.+...|..|++-.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 456677777777777777777777777777777777666666666666643
No 218
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.98 E-value=0.017 Score=46.45 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=37.3
Q ss_pred HHHHHHcCCChHHHHHHHhhCCC--C----ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcC
Q 048364 87 MIKGYSKSGNVCEARDFFERMPL--R----NVASWSAMIAAYLNAGAYDPGLKLFREMISNE 142 (400)
Q Consensus 87 l~~~~~~~~~~~~a~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 142 (400)
....+.+.|++++|++.|+.+.. | -..+.-.++.++.+.|+++.|...++.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 44456677888888888887751 2 22355567778888888888888888887443
No 219
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.97 E-value=0.012 Score=46.35 Aligned_cols=87 Identities=10% Similarity=0.109 Sum_probs=46.8
Q ss_pred ChhhHHHHHHHHHhc-----CCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccc----------------chhhhhh
Q 048364 111 NVASWSAMIAAYLNA-----GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLG----------------SVGLLMG 169 (400)
Q Consensus 111 ~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~----------------~~~~~~a 169 (400)
+-.+|..+++.|.+. |..+=....+..|. +-|+.-|..+|+.||..+=+.. +.+. +
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~-efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c--~ 122 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMD-EFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQEC--A 122 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHH-HcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHH--H
Confidence 444444444444332 33444444444444 4455555555555555443211 1122 7
Q ss_pred hhhhhHHHhccccchHHHHHHHHHHHHhcCC
Q 048364 170 KSAHGFIVKNEWELNEQIATILVDMYAKCGF 200 (400)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 200 (400)
..+++.|...|+-||..++..+++.+.+.+.
T Consensus 123 i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 123 IDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 7777777777777777777777777755443
No 220
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.93 E-value=0.013 Score=42.59 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=24.2
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHhc----cCCccHHHHHHHHH
Q 048364 282 DLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM----RLEPNVIIWGSFLA 327 (400)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~p~~~~~~~l~~ 327 (400)
...|+..+..+++.+|+..|++..|+++++.. +++-+..+|..|+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44455555555555555555555555555554 43334445555544
No 221
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.83 E-value=0.1 Score=37.48 Aligned_cols=141 Identities=12% Similarity=0.107 Sum_probs=86.9
Q ss_pred HHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHH
Q 048364 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305 (400)
Q Consensus 226 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 305 (400)
+.-.|..++..++..+.... .+..-+|.+|--....-+-+-..++++.+-+-+.+. .+|+...
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHH
Confidence 34467777788887777654 255666767666666666666666666665432222 2333333
Q ss_pred HHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhccc
Q 048364 306 AYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 306 a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 385 (400)
....+-.++ .+....+..+.....+|+-+.-.+++.++.+.+ . +++.....+..+|.+.|+..++.+++++.-+.|
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~-~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-E-INPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-C-CCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 333333332 234455667788899999999999999988755 4 688999999999999999999999999999888
Q ss_pred cc
Q 048364 386 VR 387 (400)
Q Consensus 386 ~~ 387 (400)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 74
No 222
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.75 E-value=0.0047 Score=35.41 Aligned_cols=41 Identities=27% Similarity=0.470 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 048364 321 IWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICD 363 (400)
Q Consensus 321 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 363 (400)
++..+...|.+.|++++|+++++++++.. | .++..+..++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P-~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-P-DDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-c-CCHHHHHHhhh
Confidence 56678888999999999999999999988 8 77777776653
No 223
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.73 E-value=0.0086 Score=52.74 Aligned_cols=98 Identities=12% Similarity=0.015 Sum_probs=73.8
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHH
Q 048364 285 PRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNV----IIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359 (400)
Q Consensus 285 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 359 (400)
.+...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..++++++.. + + .|.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n-~---~f~ 147 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-N-L---KFS 147 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-c-h---hHH
Confidence 35678899999999999999999999997 777874 358999999999999999999999999975 3 2 222
Q ss_pred HHHH--HhhcccchHHHHHHHHHHhccccc
Q 048364 360 LICD--LYTMNEKWEGAERVRKLMLNQNVR 387 (400)
Q Consensus 360 ~l~~--~~~~~g~~~~a~~~~~~m~~~~~~ 387 (400)
.+.. .+....+.++..++++...+.|..
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 1111 112233445777788888877764
No 224
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.70 E-value=0.48 Score=43.38 Aligned_cols=333 Identities=13% Similarity=0.081 Sum_probs=194.2
Q ss_pred cccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH--HhCCHHHHHHHHhhCCC------CChhhHHHHHHHHHcCCChH
Q 048364 27 THFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY--VVTSFGFARKLFDELPE------RNAVTWNTMIKGYSKSGNVC 98 (400)
Q Consensus 27 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~g~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~ 98 (400)
.+.|..+.+.++|++.++. ++.+...|...+..+ ..|+.+.....|+.... .....|...|..-..++++.
T Consensus 90 ~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k 168 (577)
T KOG1258|consen 90 YKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWK 168 (577)
T ss_pred HHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHH
Confidence 3567788888888887653 556777888888877 77888888888887764 25566888888888888888
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHHHh---c------CCcchHHHHHHHHHhc------------------CCCCCCH-H-
Q 048364 99 EARDFFERMPLRNVASWSAMIAAYLN---A------GAYDPGLKLFREMISN------------------EGLTPDQ-M- 149 (400)
Q Consensus 99 ~a~~~~~~~~~~~~~~~~~l~~~~~~---~------g~~~~a~~~~~~m~~~------------------~~~~p~~-~- 149 (400)
....+|++..+-....|+..-.-|.+ . ...+++.++-.....+ .-..|.. .
T Consensus 169 ~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~ 248 (577)
T KOG1258|consen 169 RVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLT 248 (577)
T ss_pred HHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhh
Confidence 88888888764433333333322221 1 1122222222211100 0001110 0
Q ss_pred -HHHHHHHHhhcc-------cchhhhhhhhhhhHHHhcc-------ccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 048364 150 -TIGAVLSGCSHL-------GSVGLLMGKSAHGFIVKNE-------WELNEQIATILVDMYAKCGFLKYALMVFELMEER 214 (400)
Q Consensus 150 -~~~~ll~~~~~~-------~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 214 (400)
..+.+-..+... -.... ....++.-.+.. ..++..+|..-+..-...|+++.+.-+|+...-|
T Consensus 249 ~~~~~l~~~~~~~~~~~~~s~~~~~--kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~ 326 (577)
T KOG1258|consen 249 EEKTILKRIVSIHEKVYQKSEEEEE--KRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP 326 (577)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhHHH--HHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH
Confidence 011111111100 00111 111111111111 1235567788888888999999999999998764
Q ss_pred C---cccHHHHHHHHHhCCChhhHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCCh-h
Q 048364 215 N---VISWTALICGSAHRGYSEDALSLFEMMQATGVK--PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRI-Q 288 (400)
Q Consensus 215 ~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~ 288 (400)
- ...|-..+.-....|+.+-|..++....+--++ |....+.+.+ +-..|+++.|..+++.+..+ . |+. .
T Consensus 327 cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e--~-pg~v~ 401 (577)
T KOG1258|consen 327 CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESE--Y-PGLVE 401 (577)
T ss_pred HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhh--C-Cchhh
Confidence 2 234555555555569988888887766554333 3333333222 34468999999999999864 3 543 2
Q ss_pred hHHHHHHHHHhcCChHHHH---HHHHhc-cCCccHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHcCCCCCCchHHH
Q 048364 289 HYGCMVDLFGKAGFLEEAY---EVIRTM-RLEPNVIIWGSFLA-----ACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359 (400)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~---~~~~~~-~~~p~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 359 (400)
.-..-+....+.|+.+.+. +++... ...-+..+...+.- .+.-.++.+.|..++.++.+.. | ++...|.
T Consensus 402 ~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~-~-~~k~~~~ 479 (577)
T KOG1258|consen 402 VVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDIL-P-DCKVLYL 479 (577)
T ss_pred hHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC-C-ccHHHHH
Confidence 2233344566788888887 444443 11122222222222 2344678999999999999998 8 8888888
Q ss_pred HHHHHhhccc
Q 048364 360 LICDLYTMNE 369 (400)
Q Consensus 360 ~l~~~~~~~g 369 (400)
.+++.....+
T Consensus 480 ~~~~~~~~~~ 489 (577)
T KOG1258|consen 480 ELIRFELIQP 489 (577)
T ss_pred HHHHHHHhCC
Confidence 8888776555
No 225
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.058 Score=46.61 Aligned_cols=95 Identities=17% Similarity=0.150 Sum_probs=74.0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhc-cCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 048364 287 IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLE-PNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDL 364 (400)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 364 (400)
..++..+.-+|.+.+++..|++...+. ... +|....-.=..+|...|+++.|...|+++++.. | .|..+-..|+.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P-~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE-P-SNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-C-CcHHHHHHHHHH
Confidence 346777888999999999999888877 333 466666666788999999999999999999999 8 777777777777
Q ss_pred hhcccchHHH-HHHHHHHhc
Q 048364 365 YTMNEKWEGA-ERVRKLMLN 383 (400)
Q Consensus 365 ~~~~g~~~~a-~~~~~~m~~ 383 (400)
-.+...+.+. .++|..|-.
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 7666665554 667777754
No 226
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.42 Score=41.65 Aligned_cols=85 Identities=13% Similarity=0.034 Sum_probs=48.5
Q ss_pred HHhCCChhhHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC-hhhHHHHHHHHHhcC
Q 048364 226 SAHRGYSEDALSLFEMMQAT---GVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR-IQHYGCMVDLFGKAG 301 (400)
Q Consensus 226 ~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 301 (400)
..+.|.+..|.+.|.+.+.. +..|+...|.....+..+.|+.++|+.--+...+ +.+. ...|..-..++.-.+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHH
Confidence 45667777777777776653 2344555566666666677777777666655552 2221 122223333455566
Q ss_pred ChHHHHHHHHhc
Q 048364 302 FLEEAYEVIRTM 313 (400)
Q Consensus 302 ~~~~a~~~~~~~ 313 (400)
+|++|.+-|++.
T Consensus 336 ~~e~AV~d~~~a 347 (486)
T KOG0550|consen 336 KWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHH
Confidence 677777666665
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.61 E-value=0.018 Score=50.85 Aligned_cols=97 Identities=13% Similarity=0.035 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHHHHH
Q 048364 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRI----QHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWG 323 (400)
Q Consensus 249 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~ 323 (400)
.+...++.+..+|.+.|++++|...|+...+ +.|+. .+|..+..+|...|+.++|++.+++. ...+. .|.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~--~f~ 147 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL--KFS 147 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch--hHH
Confidence 3567899999999999999999999999884 35654 35899999999999999999999998 43221 222
Q ss_pred HHHH--HHHhcCCHHHHHHHHHHHHHcCC
Q 048364 324 SFLA--ACKEHKQFDMAERVIKQALRMVK 350 (400)
Q Consensus 324 ~l~~--~~~~~~~~~~a~~~~~~~~~~~~ 350 (400)
.+.. .+....+.++..++++.+.+.+.
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1111 11122344567777888887774
No 228
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.60 E-value=0.012 Score=44.36 Aligned_cols=54 Identities=15% Similarity=0.102 Sum_probs=22.4
Q ss_pred HHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc
Q 048364 258 LTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
+..+...|++++|..+.+.+... -+.+...|..+|.+|...|+...|.+.|+++
T Consensus 69 ~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 69 AEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 33344444444444444444421 1223344444444444444444444444433
No 229
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.55 E-value=0.78 Score=43.91 Aligned_cols=97 Identities=9% Similarity=0.024 Sum_probs=50.9
Q ss_pred CHHHHHHHHhhCCC-CC-hhhHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcC
Q 048364 65 SFGFARKLFDELPE-RN-AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNE 142 (400)
Q Consensus 65 ~~~~a~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 142 (400)
..++....+++-+. |- ...-...+..+.+.+++...++++.. ...+...-.....+....|+.++|.+....+- ..
T Consensus 81 ~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW-~~ 158 (644)
T PRK11619 81 PAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELW-LT 158 (644)
T ss_pred CHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh-cc
Confidence 35555555555442 21 12223334455567777777773322 23344444556667777777777766666664 22
Q ss_pred CCCCCHHHHHHHHHHhhcccch
Q 048364 143 GLTPDQMTIGAVLSGCSHLGSV 164 (400)
Q Consensus 143 ~~~p~~~~~~~ll~~~~~~~~~ 164 (400)
| ......+..++..+.+.|..
T Consensus 159 g-~~~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 159 G-KSLPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred C-CCCChHHHHHHHHHHHcCCC
Confidence 2 12234555566666555544
No 230
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.53 E-value=0.52 Score=41.64 Aligned_cols=131 Identities=14% Similarity=0.089 Sum_probs=98.5
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHH
Q 048364 217 ISWTALICGSAHRGYSEDALSLFEMMQATG-VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295 (400)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (400)
..|...+..-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+...|..+|+.-... ++.++..-+-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 346667777777777888999999998888 6677788888887665 67888899999877643 2333333345667
Q ss_pred HHHhcCChHHHHHHHHhc--cCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 296 LFGKAGFLEEAYEVIRTM--RLEPN--VIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 296 ~~~~~g~~~~a~~~~~~~--~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
.+.+.++-+.|..+|+.. .+..+ ...|..+|.--...|+...+..+=+++...- |
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~-p 533 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV-P 533 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc-C
Confidence 778889999999999866 33333 5678888888888899988888888888776 5
No 231
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.47 E-value=0.31 Score=48.14 Aligned_cols=77 Identities=13% Similarity=0.125 Sum_probs=46.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCCccc---HHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 048364 191 LVDMYAKCGFLKYALMVFELMEERNVIS---WTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267 (400)
Q Consensus 191 l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 267 (400)
.+.+|..+|+|.+|..+..++..+-... -..|+.-+...+++-+|-++..+-... | .-.+..+++...+
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~ 1042 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEW 1042 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHH
Confidence 4556667777777777776666532222 256777778888888888877665432 1 2233345555566
Q ss_pred hhHHHHHH
Q 048364 268 DEGRKYFK 275 (400)
Q Consensus 268 ~~a~~~~~ 275 (400)
++|..+-.
T Consensus 1043 ~eAlrva~ 1050 (1265)
T KOG1920|consen 1043 EEALRVAS 1050 (1265)
T ss_pred HHHHHHHH
Confidence 66655443
No 232
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=96.40 E-value=0.1 Score=39.83 Aligned_cols=130 Identities=13% Similarity=0.131 Sum_probs=68.3
Q ss_pred hHHHHhCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHHHhCCHHHHHHHHhhCCCCChhh
Q 048364 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPERNAVT 83 (400)
Q Consensus 4 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~ 83 (400)
+.-+.+.|++|+...|..+++.+.+.|++....+++ +.++-+|.......+-.+ .+....+.++--+|..+=...
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~-~~~~~~~~Ql~lDMLkRL~~~ 91 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSL-GNQYPPAYQLGLDMLKRLGTA 91 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHh-HccChHHHHHHHHHHHHhhhh
Confidence 344455677888788888888888777765544443 555444443333222222 122222333333333222234
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHH
Q 048364 84 WNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM 138 (400)
Q Consensus 84 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 138 (400)
+..++..+...|++-+|+++.+....-+...-..++.+-.+.++..--..+|+-.
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5556666777777777777776654333344445555555555555444444443
No 233
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.36 E-value=0.0032 Score=33.67 Aligned_cols=32 Identities=25% Similarity=0.490 Sum_probs=28.6
Q ss_pred HHHHHHcCCCCCCchHHHHHHHHhhcccchHHHH
Q 048364 342 IKQALRMVKPENDGGVFTLICDLYTMNEKWEGAE 375 (400)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 375 (400)
+++.++.. | .++.+|..++.+|...|++++|+
T Consensus 2 y~kAie~~-P-~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-P-NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-C-CCHHHHHHHHHHHHHCcCHHhhc
Confidence 67888888 8 99999999999999999999886
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.29 E-value=0.36 Score=44.33 Aligned_cols=163 Identities=12% Similarity=0.076 Sum_probs=108.7
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHHHHCC-CCCC-----HHHHHHHHHHHHh----cCChhhHHHHHHHhhhhcCCCCCh
Q 048364 218 SWTALICGSAHRGYSEDALSLFEMMQATG-VKPN-----EMTFTGVLTACVH----TGLVDEGRKYFKMIDEEYDLEPRI 287 (400)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~-----~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 287 (400)
....+++...=.|+-+.+++.+.+..+.+ +.-. ...|..++..++. ....+.|.++++.+.++ -|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCc
Confidence 34455555666778888888777765532 2211 1234444444433 45678899999999864 4665
Q ss_pred hhHHH-HHHHHHhcCChHHHHHHHHhc-cCC-----ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHH
Q 048364 288 QHYGC-MVDLFGKAGFLEEAYEVIRTM-RLE-----PNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360 (400)
Q Consensus 288 ~~~~~-l~~~~~~~g~~~~a~~~~~~~-~~~-----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 360 (400)
..|.. -.+.+...|++++|.+.|++. ... .....+--+...+.-.+++++|...+.++.+.. . .+..+|..
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~-WSka~Y~Y 344 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-K-WSKAFYAY 344 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-c-cHHHHHHH
Confidence 55543 355677899999999999976 111 123445566677888999999999999999987 5 45555555
Q ss_pred HHHH-hhcccch-------HHHHHHHHHHhccc
Q 048364 361 ICDL-YTMNEKW-------EGAERVRKLMLNQN 385 (400)
Q Consensus 361 l~~~-~~~~g~~-------~~a~~~~~~m~~~~ 385 (400)
+..+ +...|+. ++|.+++.+.....
T Consensus 345 ~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 345 LAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 5444 4567877 88889988887543
No 235
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.16 E-value=0.064 Score=45.61 Aligned_cols=164 Identities=12% Similarity=0.051 Sum_probs=94.6
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCC----CChhh
Q 048364 218 SWTALICGSAHRGYSEDALSLFEMMQAT-GVKPN---EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLE----PRIQH 289 (400)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~ 289 (400)
.|..+..++.+..++.+++.+-+.-... |..|. .....++..++...+.++++.+.|+...+-..-. ....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 4445555555555555555544332221 22221 1233445666677777888887777666321111 12456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc-------cCCccHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----C
Q 048364 290 YGCMVDLFGKAGFLEEAYEVIRTM-------RLEPNVIIW-----GSFLAACKEHKQFDMAERVIKQALRMVKPE----N 353 (400)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~-------~~~p~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~ 353 (400)
+..|...|.+..|+++|.-+..+. ++..-..-| -.+..++...|+..+|.+..++..+..... .
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 778888888888888876666554 322211222 334456777888888888887776644311 3
Q ss_pred CchHHHHHHHHhhcccchHHHHHHHHHH
Q 048364 354 DGGVFTLICDLYTMNEKWEGAERVRKLM 381 (400)
Q Consensus 354 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m 381 (400)
.......+.+.|...|+.+.|+.-++..
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 3445556777788888888877666654
No 236
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.033 Score=48.11 Aligned_cols=63 Identities=13% Similarity=0.052 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 319 VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
..+++.+.-+|.+.+++..|+...++.+..+ | ++......-..++...|+++.|+..|+++++
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-P-NNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-C-CchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3567888889999999999999999999999 8 9999999999999999999999999999986
No 237
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.15 E-value=0.23 Score=41.98 Aligned_cols=152 Identities=7% Similarity=0.008 Sum_probs=68.5
Q ss_pred hCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHH----HHHHHHhcCCh
Q 048364 228 HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC----MVDLFGKAGFL 303 (400)
Q Consensus 228 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~ 303 (400)
-.|+..+|...++++.+. .+.|...+...=.+|.-.|+.+.-...++++.. ...++...|.. +.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 345555555555555544 233444455455555555555555555555553 22333333222 22233455555
Q ss_pred HHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCCchHHHHHHHHhhcccchHHHHHHHH
Q 048364 304 EEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP--ENDGGVFTLICDLYTMNEKWEGAERVRK 379 (400)
Q Consensus 304 ~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 379 (400)
++|++.-++. .+.| |...-.+....+-..|++.++.++..+-...-.. -.-..-|......+...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 5555555554 3333 3444444445555555555555554433221100 0011122233334445555555555555
Q ss_pred HHh
Q 048364 380 LML 382 (400)
Q Consensus 380 ~m~ 382 (400)
+=+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 433
No 238
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.10 E-value=0.35 Score=35.70 Aligned_cols=52 Identities=21% Similarity=0.216 Sum_probs=24.4
Q ss_pred HhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc
Q 048364 262 VHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
.+.|++++|.+.|+.+..++...+ ....--.++.+|.+.+++++|...+++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 344555555555555554332222 1223334455555555555555555544
No 239
>PRK15331 chaperone protein SicA; Provisional
Probab=96.07 E-value=0.26 Score=37.31 Aligned_cols=86 Identities=8% Similarity=-0.021 Sum_probs=52.3
Q ss_pred HHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChH
Q 048364 225 GSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLE 304 (400)
Q Consensus 225 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 304 (400)
-+...|++++|..+|+-+.-.+. -+..-+..|..++-..+++++|...|.....- + ..|+..+-....+|...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHH
Confidence 34566777777777776655432 24444555666666667777777777655521 1 223333444667777777777
Q ss_pred HHHHHHHhc
Q 048364 305 EAYEVIRTM 313 (400)
Q Consensus 305 ~a~~~~~~~ 313 (400)
.|...|+..
T Consensus 123 ~A~~~f~~a 131 (165)
T PRK15331 123 KARQCFELV 131 (165)
T ss_pred HHHHHHHHH
Confidence 777777766
No 240
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.97 E-value=0.15 Score=41.79 Aligned_cols=97 Identities=14% Similarity=0.132 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc----cCCc-cHHHHHHHH
Q 048364 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM----RLEP-NVIIWGSFL 326 (400)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~p-~~~~~~~l~ 326 (400)
.|+.-+.. .+.|++..|.+-|....+++.-.+ ....+--|..++...|++++|..+|..+ +-.| -...+--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45555443 345667777777776665321111 1233444677777777777777777666 2122 224455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 327 AACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 327 ~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
.+..+.|+.++|...|+++.+.- |
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~Y-P 246 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRY-P 246 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHC-C
Confidence 66677777777777777777776 5
No 241
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.87 E-value=0.39 Score=43.53 Aligned_cols=156 Identities=9% Similarity=-0.014 Sum_probs=83.8
Q ss_pred hcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChHHHHHHH
Q 048364 26 CTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFF 104 (400)
Q Consensus 26 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 104 (400)
..-.|+++.+.++.+.-.-. +.......+.++..+ +.|-.+.|+++-++- ..-.....+.|+++.|.++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~~~a 341 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTDP--------DHRFELALQLGNLDIALEIA 341 (443)
T ss_dssp HHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS-H--------HHHHHHHHHCT-HHHHHHHC
T ss_pred HHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCCh--------HHHhHHHHhcCCHHHHHHHH
Confidence 34456777766655311100 111233466777777 888888888875432 23445567788888888887
Q ss_pred hhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccch
Q 048364 105 ERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN 184 (400)
Q Consensus 105 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 184 (400)
+... +...|..|.....+.|+++-|.+.|.+.. -+..++-.|.-.|+.+. -.++.......|.
T Consensus 342 ~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~----------d~~~L~lLy~~~g~~~~--L~kl~~~a~~~~~--- 404 (443)
T PF04053_consen 342 KELD--DPEKWKQLGDEALRQGNIELAEECYQKAK----------DFSGLLLLYSSTGDREK--LSKLAKIAEERGD--- 404 (443)
T ss_dssp CCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHH--HHHHHHHHHHTT----
T ss_pred HhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc----------CccccHHHHHHhCCHHH--HHHHHHHHHHccC---
Confidence 7665 56688888888888888888888887765 23444445555555554 3334333333331
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFEL 210 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 210 (400)
++....++.-.|+.++..+++.+
T Consensus 405 ---~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 ---INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ---HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHH
Confidence 22333334444555555554433
No 242
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.82 E-value=0.19 Score=42.88 Aligned_cols=164 Identities=10% Similarity=0.040 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCH---HHHHHHHHHhhcccchhhhhhhhhhhHHHhcc-----ccch
Q 048364 113 ASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ---MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE-----WELN 184 (400)
Q Consensus 113 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~---~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~ 184 (400)
.+|..+.+++-+.-++.+++.+-+.-....|..|.. ....++-.++...+.++. +.+.|+...+.- ....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~--~Lesfe~A~~~A~~~~D~~LE 161 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQK--ALESFEKALRYAHNNDDAMLE 161 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHH--HHHHHHHHHHHhhccCCceee
Confidence 355556666666666666666665554344444421 123334555555556666 555555544321 1123
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccC-------CCcc------cHHHHHHHHHhCCChhhHHHHHHHHHH----CCC
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFELMEE-------RNVI------SWTALICGSAHRGYSEDALSLFEMMQA----TGV 247 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~------~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~ 247 (400)
..++..|...|.+..|+++|.-+..+..+ .|.. ....|.-++...|...+|.+.-++..+ .|-
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD 241 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 45677788888888888877655544432 2221 122344556677777777776666433 332
Q ss_pred CC-CHHHHHHHHHHHHhcCChhhHHHHHHHhh
Q 048364 248 KP-NEMTFTGVLTACVHTGLVDEGRKYFKMID 278 (400)
Q Consensus 248 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (400)
+| .......+.+.|...|+.+.|+.-|+...
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 22 22344566677778888888877777654
No 243
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.81 E-value=0.15 Score=41.91 Aligned_cols=86 Identities=13% Similarity=0.136 Sum_probs=45.5
Q ss_pred hCCChhhHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC-hhhHHHHHHHHHhcCChH
Q 048364 228 HRGYSEDALSLFEMMQATGV--KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR-IQHYGCMVDLFGKAGFLE 304 (400)
Q Consensus 228 ~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 304 (400)
+.|++..|...|...++... .-....+-.|..++...|++++|..+|..+.+.++-.|. +..+--|..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 44556666666665555421 111223344555666666666666666666554433332 244555555566666666
Q ss_pred HHHHHHHhc
Q 048364 305 EAYEVIRTM 313 (400)
Q Consensus 305 ~a~~~~~~~ 313 (400)
+|..+|++.
T Consensus 233 ~A~atl~qv 241 (262)
T COG1729 233 EACATLQQV 241 (262)
T ss_pred HHHHHHHHH
Confidence 666666655
No 244
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.80 E-value=0.37 Score=36.63 Aligned_cols=124 Identities=15% Similarity=0.119 Sum_probs=71.7
Q ss_pred HHhCCChhhHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHH--HHHHhcCC
Q 048364 226 SAHRGYSEDALSLFEMMQATGVKPNE-MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV--DLFGKAGF 302 (400)
Q Consensus 226 ~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~ 302 (400)
+.+.+..++|+.-|.++.+.|...=+ ....-......+.|+...|...|+++-+...++.-..-...|= -.+...|-
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 45667788888888888877643211 1112223345667888888888888875422211111111121 13456777
Q ss_pred hHHHHHHHHhc--cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 303 LEEAYEVIRTM--RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 303 ~~~a~~~~~~~--~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
+++.....+-+ .-.| -...-..|.-+-.+.|++.+|...|..+..-.
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 77777777766 1122 22234555666677888888888888777643
No 245
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.79 E-value=0.32 Score=44.09 Aligned_cols=157 Identities=12% Similarity=0.022 Sum_probs=101.4
Q ss_pred HHHHhcCCHHHHHHHHH--hcc-CCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh
Q 048364 193 DMYAKCGFLKYALMVFE--LME-ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269 (400)
Q Consensus 193 ~~~~~~g~~~~A~~~~~--~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 269 (400)
....-.|+++.+.+... .+. .-+....+.++.-+.+.|.++.|+.+-.+ ..+ -.....+.|+++.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~~---rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD---------PDH---RFELALQLGNLDI 336 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC---------hHH---HhHHHHhcCCHHH
Confidence 34456788888666654 222 11244577888888899999999887533 221 2334467899998
Q ss_pred HHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 270 GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
|.++.+.. ++...|..|.+...++|+++-|++.|++.+ -|..|+-.|.-.|+.+...++.+.....+
T Consensus 337 A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 337 ALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 87765443 366789999999999999999999999885 35667777888899988888888887777
Q ss_pred CCCCCchHHHHHHHHhhcccchHHHHHHHHHH
Q 048364 350 KPENDGGVFTLICDLYTMNEKWEGAERVRKLM 381 (400)
Q Consensus 350 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 381 (400)
- ++....++.-.|+.++..+++.+-
T Consensus 404 -~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 -D------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp --------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -C------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2 234444555667888877776653
No 246
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.77 E-value=0.98 Score=38.37 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=12.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 326 LAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 326 ~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
++.+.+.++.+.+.+.+.+|+...
T Consensus 128 l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 128 LEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHhccCChhHHHHHHHHHHHhc
Confidence 344444555555555555555544
No 247
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.77 E-value=0.35 Score=35.68 Aligned_cols=74 Identities=12% Similarity=0.078 Sum_probs=55.0
Q ss_pred HHHHHHHhcCChHHHHHHHHhc--c--CCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhh
Q 048364 292 CMVDLFGKAGFLEEAYEVIRTM--R--LEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366 (400)
Q Consensus 292 ~l~~~~~~~g~~~~a~~~~~~~--~--~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 366 (400)
.-.....+.|++++|.+.|+.+ . ..| ....--.++.+|.+.+++++|...+++.+++. |...-.-|.....+++
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-P~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-PTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCCCccHHHHHHHHH
Confidence 3455567899999999999999 2 122 33456678899999999999999999999999 7444444555555543
No 248
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.98 Score=37.72 Aligned_cols=149 Identities=11% Similarity=0.064 Sum_probs=97.9
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCCh
Q 048364 224 CGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFL 303 (400)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 303 (400)
......|+..+|..+|+........ +...-..+..++...|+.+.|..++..+..+ --.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcC
Confidence 3456778888888888887765322 3455667778888888888888888877642 1111122223345556666666
Q ss_pred HHHHHHHHhccCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHH
Q 048364 304 EEAYEVIRTMRLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGA 374 (400)
Q Consensus 304 ~~a~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 374 (400)
.+...+-++..-.| |...--.+...+...|+.+.|.+.+-.+++.+.--.+...-..++..+...|.-+.+
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 66666666664456 566666777888888899988888877777654335667777777777776644433
No 249
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.68 E-value=2.7 Score=42.13 Aligned_cols=90 Identities=11% Similarity=0.154 Sum_probs=56.0
Q ss_pred CCCHHHHHHHH----HHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHH--H
Q 048364 248 KPNEMTFTGVL----TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVI--I 321 (400)
Q Consensus 248 ~p~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~--~ 321 (400)
.|+...+..+. ..+.+...+++|.-.|+..-+ ..--+.+|..+|+|.+|+.+...+...-+.. +
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~ 1001 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVIL 1001 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHH
Confidence 45555544444 444556777777777765542 1235667778888888888877774333332 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048364 322 WGSFLAACKEHKQFDMAERVIKQALR 347 (400)
Q Consensus 322 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (400)
-..|+.-+..+++.-+|.+++.+...
T Consensus 1002 a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1002 AEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHHcccchhHHHHHHHHhc
Confidence 35667777777887777777776643
No 250
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.57 E-value=0.67 Score=34.53 Aligned_cols=128 Identities=16% Similarity=0.160 Sum_probs=88.2
Q ss_pred chhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcC
Q 048364 16 SFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKS 94 (400)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 94 (400)
......++..+...+.+.....+++.+...+. .+...++.++..| +. +.+.....++. ..+......++..|.+.
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~-~~~~ll~~l~~--~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY-DPQKEIERLDN--KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH-CHHHHHHHHHh--ccccCCHHHHHHHHHHc
Confidence 33456778888888899999999999988874 5777899999999 55 34455555553 23445566688888888
Q ss_pred CChHHHHHHHhhCCCCChhhHHHHHHHHHhc-CCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhh
Q 048364 95 GNVCEARDFFERMPLRNVASWSAMIAAYLNA-GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCS 159 (400)
Q Consensus 95 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 159 (400)
+.++++..++.++.. |...+..+... ++++.|.+++.+- -+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~-------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQ-------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhC-------CCHHHHHHHHHHHH
Confidence 888888888888753 22334444444 7788888877652 24456666666554
No 251
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.42 E-value=1.2 Score=40.97 Aligned_cols=159 Identities=16% Similarity=0.055 Sum_probs=104.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC-CCc---------ccHHHHHHHHHh----CCChhhHHHHHHHHHHCCCCCCHHH
Q 048364 188 ATILVDMYAKCGFLKYALMVFELMEE-RNV---------ISWTALICGSAH----RGYSEDALSLFEMMQATGVKPNEMT 253 (400)
Q Consensus 188 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~---------~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~ 253 (400)
+..+++...=.||-+.+.+.+....+ ++. ..|+..+..++. ....+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 34556666677899999998887765 222 235555555544 35668899999999876 566655
Q ss_pred HHHH-HHHHHhcCChhhHHHHHHHhhhh-cCCC-CChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHH
Q 048364 254 FTGV-LTACVHTGLVDEGRKYFKMIDEE-YDLE-PRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAA 328 (400)
Q Consensus 254 ~~~l-~~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~ 328 (400)
|... .+.+...|++++|.+.|+..... ...+ .....+--+.-++.-..++++|.+.|..+ .... +..+|.-+..+
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 5433 34566789999999999976531 1111 12334555666788899999999999999 3223 33444444333
Q ss_pred -HHhcCCH-------HHHHHHHHHHHHc
Q 048364 329 -CKEHKQF-------DMAERVIKQALRM 348 (400)
Q Consensus 329 -~~~~~~~-------~~a~~~~~~~~~~ 348 (400)
+...|+. ++|..++.++...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 3467777 8888888877653
No 252
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.36 E-value=0.96 Score=36.62 Aligned_cols=114 Identities=10% Similarity=0.068 Sum_probs=73.6
Q ss_pred hcCChhhHHHHHHHhhhhcC----CCCChhhHHHHHHHHHhcCChHHHHHHHHhc-c------CCccH-HHHHHHHHHHH
Q 048364 263 HTGLVDEGRKYFKMIDEEYD----LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-R------LEPNV-IIWGSFLAACK 330 (400)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~------~~p~~-~~~~~l~~~~~ 330 (400)
+.-++++|.++|++...-.. .+.-...+....+.+.+...+++|-..+.+- + -.|+. ..|...|-.+.
T Consensus 122 env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L 201 (308)
T KOG1585|consen 122 ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYL 201 (308)
T ss_pred hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHh
Confidence 44566777777766543111 1112344666777888888998887777665 1 12222 24556666777
Q ss_pred hcCCHHHHHHHHHHHHHcCC---CCCCchHHHHHHHHhhcccchHHHHHHH
Q 048364 331 EHKQFDMAERVIKQALRMVK---PENDGGVFTLICDLYTMNEKWEGAERVR 378 (400)
Q Consensus 331 ~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 378 (400)
...++..|...+++--..+. + .+..+...|+.+|- .|+.+++..++
T Consensus 202 ~~~Dyv~aekc~r~~~qip~f~~s-ed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 202 YAHDYVQAEKCYRDCSQIPAFLKS-EDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred hHHHHHHHHHHhcchhcCccccCh-HHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 78899999999998655442 4 67788888888875 56776665544
No 253
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.36 E-value=1.3 Score=36.32 Aligned_cols=68 Identities=26% Similarity=0.336 Sum_probs=42.6
Q ss_pred HHcCCChHHHHHHHhhCCCC------ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhh
Q 048364 91 YSKSGNVCEARDFFERMPLR------NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCS 159 (400)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 159 (400)
-.+.|++++|.+.|+.+... ...+--.++-++-+.++++.|+..+++..+..+-.||. .|..-|.+.+
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs 117 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLS 117 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHH
Confidence 34667777777777776522 22344456667778888888888888887555555553 3333444433
No 254
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.32 E-value=0.14 Score=42.09 Aligned_cols=98 Identities=19% Similarity=0.221 Sum_probs=67.1
Q ss_pred HHHHHhcc--CCCcccHHHHHHHHHh-----CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC------------
Q 048364 205 LMVFELME--ERNVISWTALICGSAH-----RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG------------ 265 (400)
Q Consensus 205 ~~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~------------ 265 (400)
++.|.... +.|-.+|-+.+..+.. .+..+=....++.|.+.|+.-|..+|+.|+..+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44455554 4566677777776654 3556666677788888899889999998888765422
Q ss_pred ----ChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCCh
Q 048364 266 ----LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFL 303 (400)
Q Consensus 266 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 303 (400)
+-+-+++++++|. .+|+.||-.+-..|+.++.+.+-.
T Consensus 134 HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhcccccc
Confidence 2234667777776 567777777777777777776643
No 255
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.32 E-value=1.1 Score=40.44 Aligned_cols=74 Identities=18% Similarity=0.169 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc-cCCc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 048364 290 YGCMVDLFGKAGFLEEAYEVIRTM-RLEP---NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICD 363 (400)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 363 (400)
-..+..+.-+.|+.++|.+.++++ ...| +......|+.++...+.+.++..++.+.-+...|+.-...|...+-
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 344566666777777777777777 3223 2335566777777777777777777776554434333444544443
No 256
>PRK11906 transcriptional regulator; Provisional
Probab=95.31 E-value=0.49 Score=42.23 Aligned_cols=160 Identities=10% Similarity=0.126 Sum_probs=98.2
Q ss_pred ccH--HHHHHHHHhCC-----ChhhHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhc---C------ChhhHHHHHHHhh
Q 048364 217 ISW--TALICGSAHRG-----YSEDALSLFEMMQAT-GVKPN-EMTFTGVLTACVHT---G------LVDEGRKYFKMID 278 (400)
Q Consensus 217 ~~~--~~l~~~~~~~~-----~~~~a~~~~~~m~~~-~~~p~-~~~~~~l~~~~~~~---~------~~~~a~~~~~~~~ 278 (400)
..| ...+.+..... ..+.|+.+|.+.... ...|+ ...|..+..++... | ...+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 556 55665554422 346778888888722 24554 35565555554332 1 2334555555555
Q ss_pred hhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCch
Q 048364 279 EEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNV-IIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356 (400)
Q Consensus 279 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 356 (400)
+ --+.|......+..+..-.++++.|...|++. .+.||. .+|......+.-.|+.++|.+.+++..+.. |..-..
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs-P~~~~~ 408 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE-PRRRKA 408 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-chhhHH
Confidence 3 22346677777777777888899999999988 666754 355555556677899999999999999888 622222
Q ss_pred HH-HHHHHHhhcccchHHHHHHHHH
Q 048364 357 VF-TLICDLYTMNEKWEGAERVRKL 380 (400)
Q Consensus 357 ~~-~~l~~~~~~~g~~~~a~~~~~~ 380 (400)
.. ...+..|+.. ..++|++++-+
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHHhh
Confidence 22 2333356655 45777776643
No 257
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.30 E-value=0.15 Score=36.68 Aligned_cols=88 Identities=15% Similarity=0.009 Sum_probs=62.8
Q ss_pred HHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc----cCCc--cHHHHHHHHHHHHhcC
Q 048364 260 ACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM----RLEP--NVIIWGSFLAACKEHK 333 (400)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~p--~~~~~~~l~~~~~~~~ 333 (400)
+++..|+.+.|++.|.+... -.+.....||.-.+++.-+|+.++|++-+++. |-+. --..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 56778888888888888773 33446778888888888888888888877776 3121 1123333444567788
Q ss_pred CHHHHHHHHHHHHHcC
Q 048364 334 QFDMAERVIKQALRMV 349 (400)
Q Consensus 334 ~~~~a~~~~~~~~~~~ 349 (400)
+.+.|..-|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888888888888888
No 258
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=1.5 Score=36.62 Aligned_cols=121 Identities=12% Similarity=0.059 Sum_probs=86.4
Q ss_pred HHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHH---HHHHHHHhcCCH
Q 048364 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWG---SFLAACKEHKQF 335 (400)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~---~l~~~~~~~~~~ 335 (400)
......|++.+|...|+..... .+-+...--.++.+|...|+.+.|..++..+...-...-+. .-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 3456789999999999988853 23345666778999999999999999999983232222222 234455555555
Q ss_pred HHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 336 DMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 336 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
.+...+-+ -...+ | .|...-..+...+...|+.+.|.+.+=.+.+.
T Consensus 220 ~~~~~l~~-~~aad-P-dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 220 PEIQDLQR-RLAAD-P-DDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CCHHHHHH-HHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55444433 33455 7 89999999999999999999999876666543
No 259
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.23 E-value=1.3 Score=35.86 Aligned_cols=145 Identities=16% Similarity=0.154 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHC---CC--CCCHHHHHHHHHH
Q 048364 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT---GV--KPNEMTFTGVLTA 260 (400)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~--~p~~~~~~~l~~~ 260 (400)
..++.-...|..+|..+-|-..+++.-+ ..+.-++++|+.+|++.... +- +--...+..+-+.
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRV 159 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhH
Confidence 3444555556666665555554444321 23445677777777765432 10 0111234555566
Q ss_pred HHhcCChhhHHHHHHHhhh---hcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHhc----c-C-CccHHHHHHHHHHHH
Q 048364 261 CVHTGLVDEGRKYFKMIDE---EYDLEPR-IQHYGCMVDLFGKAGFLEEAYEVIRTM----R-L-EPNVIIWGSFLAACK 330 (400)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~---~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~----~-~-~p~~~~~~~l~~~~~ 330 (400)
+.+...+++|-..+.+-.. +..--++ ...|...|-.|.-..++..|...+++- + . .-+..+...|+.+|
T Consensus 160 lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay- 238 (308)
T KOG1585|consen 160 LVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY- 238 (308)
T ss_pred hhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-
Confidence 7777888877766654321 1111122 234556666777788999999999984 1 1 22667888899888
Q ss_pred hcCCHHHHHHHHH
Q 048364 331 EHKQFDMAERVIK 343 (400)
Q Consensus 331 ~~~~~~~a~~~~~ 343 (400)
..|+.+++..++.
T Consensus 239 d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 239 DEGDIEEIKKVLS 251 (308)
T ss_pred ccCCHHHHHHHHc
Confidence 5678888655543
No 260
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.11 E-value=0.98 Score=33.66 Aligned_cols=129 Identities=13% Similarity=0.079 Sum_probs=78.3
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHH
Q 048364 217 ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296 (400)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 296 (400)
.....++..+...+.+......++.+...+. .+....+.++..|++.+. .+....++. ..+......+++.
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~-------~~~~yd~~~~~~~ 78 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN-------KSNHYDIEKVGKL 78 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh-------ccccCCHHHHHHH
Confidence 3445566777777778888888888777653 566677777777776532 333333331 1223334446777
Q ss_pred HHhcCChHHHHHHHHhccCCccHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhc
Q 048364 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH-KQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM 367 (400)
Q Consensus 297 ~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 367 (400)
|.+.+.++++.-++.++|.. ...+..+... ++++.|.+++.+ . .++..|..++..+..
T Consensus 79 c~~~~l~~~~~~l~~k~~~~------~~Al~~~l~~~~d~~~a~~~~~~------~-~~~~lw~~~~~~~l~ 137 (140)
T smart00299 79 CEKAKLYEEAVELYKKDGNF------KDAIVTLIEHLGNYEKAIEYFVK------Q-NNPELWAEVLKALLD 137 (140)
T ss_pred HHHcCcHHHHHHHHHhhcCH------HHHHHHHHHcccCHHHHHHHHHh------C-CCHHHHHHHHHHHHc
Confidence 77778888888888877532 2223333333 677777777664 1 345667766665543
No 261
>PRK09687 putative lyase; Provisional
Probab=95.06 E-value=1.9 Score=36.64 Aligned_cols=82 Identities=11% Similarity=0.052 Sum_probs=41.2
Q ss_pred CCCChhhHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCc----chHHHHHHHHHhcCCCCCCHHHHH
Q 048364 77 PERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY----DPGLKLFREMISNEGLTPDQMTIG 152 (400)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~~~m~~~~~~~p~~~~~~ 152 (400)
..+|.......+..+...|..+-...+..-+..+|...-...+.++.+.|+. +++...+..+. . -.|+...-.
T Consensus 33 ~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~-~--~D~d~~VR~ 109 (280)
T PRK09687 33 DDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLA-L--EDKSACVRA 109 (280)
T ss_pred hCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHH-h--cCCCHHHHH
Confidence 3455555555666666655533333333333355555555666666666653 34566665553 1 134444444
Q ss_pred HHHHHhhcc
Q 048364 153 AVLSGCSHL 161 (400)
Q Consensus 153 ~ll~~~~~~ 161 (400)
..+.++...
T Consensus 110 ~A~~aLG~~ 118 (280)
T PRK09687 110 SAINATGHR 118 (280)
T ss_pred HHHHHHhcc
Confidence 444444433
No 262
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.05 E-value=1.5 Score=35.48 Aligned_cols=165 Identities=17% Similarity=0.091 Sum_probs=107.1
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CCc-ccHHHHHH-HHHhCCChhhHHHHHHHHHHCCC--CCCHHHHHHH
Q 048364 184 NEQIATILVDMYAKCGFLKYALMVFELMEE--RNV-ISWTALIC-GSAHRGYSEDALSLFEMMQATGV--KPNEMTFTGV 257 (400)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l 257 (400)
....+......+...+++..+...+..... ++. ........ .+...|+++.|...+.+...... ......+...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 173 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLAL 173 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHh
Confidence 344445555566666777777777777665 222 22333333 67788888888888888755221 1123344444
Q ss_pred HHHHHhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc-HHHHHHHHHHHHhcCC
Q 048364 258 LTACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN-VIIWGSFLAACKEHKQ 334 (400)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~ 334 (400)
...+...++.+.+...+....+ .... ....+..+...+...++++.|...+... ...|+ ...+..+...+...+.
T Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (291)
T COG0457 174 GALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGR 251 (291)
T ss_pred hhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCC
Confidence 4446677888888888888874 2233 3566777788888888888888888887 44554 3444444445556677
Q ss_pred HHHHHHHHHHHHHcCCC
Q 048364 335 FDMAERVIKQALRMVKP 351 (400)
Q Consensus 335 ~~~a~~~~~~~~~~~~~ 351 (400)
.+.+...+.+..... +
T Consensus 252 ~~~~~~~~~~~~~~~-~ 267 (291)
T COG0457 252 YEEALEALEKALELD-P 267 (291)
T ss_pred HHHHHHHHHHHHHhC-c
Confidence 888888888888877 5
No 263
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.04 E-value=0.8 Score=41.17 Aligned_cols=152 Identities=7% Similarity=0.063 Sum_probs=88.2
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcC
Q 048364 222 LICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301 (400)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 301 (400)
+|.-..+..++..-++.-++..+. .|+-.+.-+++ +-.......++++++++..+. + ...+..- ......|
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s-~~~~~~g 244 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKS-QFLQHHG 244 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchh-hhhhccc
Confidence 333344455555555555555543 34433222222 223345678888888877742 1 0111000 0000111
Q ss_pred ChHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CCchHHHHHHHHhhcccchHHHHHHHHH
Q 048364 302 FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE-NDGGVFTLICDLYTMNEKWEGAERVRKL 380 (400)
Q Consensus 302 ~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 380 (400)
. ..+.+..-...|-..+-..+..++.+.|+.++|++.++++.+.. |. +...+...|+.++...+.+.++..++.+
T Consensus 245 ~---~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 245 H---FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred c---hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1 11111111222333344557778889999999999999999877 53 3566889999999999999999999998
Q ss_pred Hhcccc
Q 048364 381 MLNQNV 386 (400)
Q Consensus 381 m~~~~~ 386 (400)
-.+...
T Consensus 321 YdDi~l 326 (539)
T PF04184_consen 321 YDDISL 326 (539)
T ss_pred hccccC
Confidence 765444
No 264
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.99 E-value=0.88 Score=35.51 Aligned_cols=94 Identities=15% Similarity=0.096 Sum_probs=52.8
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChh------h
Q 048364 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNE--MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQ------H 289 (400)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~ 289 (400)
.+..+...|++.|+.+.|.+.|.++.+....|.. ..+..+|+.....+++..+...+.++..-.....|.. +
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4555666677777777777777776665433332 3455566666667777777666665553211111111 1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc
Q 048364 290 YGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
|..+ .+...+++.+|-+.|-+.
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHcc
Confidence 2111 334567777777777666
No 265
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.97 E-value=0.43 Score=40.43 Aligned_cols=116 Identities=14% Similarity=0.096 Sum_probs=94.2
Q ss_pred hcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--cCCccHHHH----HHHHHHHHhcCCHH
Q 048364 263 HTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--RLEPNVIIW----GSFLAACKEHKQFD 336 (400)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~p~~~~~----~~l~~~~~~~~~~~ 336 (400)
..|+..+|-..++++.+ ..+.|...+...=.++.-.|+.+.-...++++ ...||...| ..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 46788888888999986 55678788887888899999999888888888 335665443 33344556899999
Q ss_pred HHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 337 MAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 337 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
+|++.-++..+.+ + .+..+...+...+...|++.++.++..+-.
T Consensus 193 dAEk~A~ralqiN-~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 193 DAEKQADRALQIN-R-FDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred hHHHHHHhhccCC-C-cchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 9999999999999 8 899999999999999999999998876544
No 266
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.91 E-value=2.6 Score=37.53 Aligned_cols=132 Identities=9% Similarity=0.081 Sum_probs=84.2
Q ss_pred cccchhHHHHHHHHHHHHhCcc-cc----hhhhhHHHHHHHhCCHHHHHHHHhhCCCCC-hhhHHHHHHH--HHcCCChH
Q 048364 27 THFNNLTVIHHLHSHILKLGFI-SH----VYVATSLLHEYVVTSFGFARKLFDELPERN-AVTWNTMIKG--YSKSGNVC 98 (400)
Q Consensus 27 ~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~l~~~--~~~~~~~~ 98 (400)
-+.+++.+|..+|.++.+..-. |. ...-+.++++|-.++.+.-...+....+.. ...|-.+..+ +.+.+++.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~ 96 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYR 96 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHH
Confidence 3678999999999998765321 11 234566777775555555555554444311 3334445444 45788899
Q ss_pred HHHHHHhhCCC-------C-----------ChhhHHHHHHHHHhcCCcchHHHHHHHHHh---cCCCCCCHHHHHHHHHH
Q 048364 99 EARDFFERMPL-------R-----------NVASWSAMIAAYLNAGAYDPGLKLFREMIS---NEGLTPDQMTIGAVLSG 157 (400)
Q Consensus 99 ~a~~~~~~~~~-------~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~~p~~~~~~~ll~~ 157 (400)
+|++.+..-.+ + |...=+..+.++...|++.++..+++++.+ .+....+..+|+.++-.
T Consensus 97 kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlm 176 (549)
T PF07079_consen 97 KALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLM 176 (549)
T ss_pred HHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Confidence 99988765431 1 112234567788899999999999988872 12234788888886655
Q ss_pred h
Q 048364 158 C 158 (400)
Q Consensus 158 ~ 158 (400)
+
T Consensus 177 l 177 (549)
T PF07079_consen 177 L 177 (549)
T ss_pred H
Confidence 5
No 267
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.83 E-value=0.48 Score=34.16 Aligned_cols=89 Identities=17% Similarity=0.049 Sum_probs=62.3
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCCh--hhHHHHHHHHHhcC
Q 048364 224 CGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRI--QHYGCMVDLFGKAG 301 (400)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g 301 (400)
-++...|+.+.|++.|.+.... .+-....||.-.+++.-.|+.++|..=+++..+-.|-+... ..|..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3567788888888888887765 33466788888888888888888888888777544433211 22334444667778
Q ss_pred ChHHHHHHHHhc
Q 048364 302 FLEEAYEVIRTM 313 (400)
Q Consensus 302 ~~~~a~~~~~~~ 313 (400)
+-+.|..-|+..
T Consensus 130 ~dd~AR~DFe~A 141 (175)
T KOG4555|consen 130 NDDAARADFEAA 141 (175)
T ss_pred chHHHHHhHHHH
Confidence 888888777765
No 268
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.79 E-value=2.8 Score=37.32 Aligned_cols=130 Identities=11% Similarity=0.172 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHHHH-HHHHHHH
Q 048364 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIW-GSFLAAC 329 (400)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~-~~l~~~~ 329 (400)
..|...+.+..+..-++.|..+|-++.+..-..+++..+++++..++ .|+..-|..+|+-- ..-||...| +..+.-+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 34666777777888899999999999855226678888898888765 57788899999865 444565554 5566777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 330 KEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 330 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
...++-+.|..+|+..+..-....-...|..++..-..-|+...+..+=++|.
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 78899999999999666543110125678888888788888877776666554
No 269
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.77 E-value=0.17 Score=42.19 Aligned_cols=60 Identities=13% Similarity=0.178 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048364 288 QHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALR 347 (400)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (400)
.++..++..+...|+++.+.+.++++ ...| +...|..++.+|.+.|+...|+..|+++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 45566666677777777777777666 4444 566677777777777777777777766655
No 270
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.71 E-value=2.8 Score=36.98 Aligned_cols=70 Identities=16% Similarity=0.167 Sum_probs=56.4
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-CCchHHHHHHHHhhcccchHHHHHHHHHHhcccc
Q 048364 317 PNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP-E-NDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386 (400)
Q Consensus 317 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 386 (400)
....+|..++..+.+.|.++.|...+.++...+.+ . ..+.+...-+......|+..+|...++...+..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 45568899999999999999999999999886521 0 1567777778888899999999999988887433
No 271
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.48 E-value=2.1 Score=34.56 Aligned_cols=195 Identities=19% Similarity=0.152 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccC-----CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFELMEE-----RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLT 259 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 259 (400)
..........+...+++..+...+..... .....+......+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 45566677778888888888888777652 3445566677777888889999999998887644431 22222333
Q ss_pred -HHHhcCChhhHHHHHHHhhhhcCC--CCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc--HHHHHHHHHHHHhcC
Q 048364 260 -ACVHTGLVDEGRKYFKMIDEEYDL--EPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN--VIIWGSFLAACKEHK 333 (400)
Q Consensus 260 -~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~--~~~~~~l~~~~~~~~ 333 (400)
++...|+++.+...++.... ... ......+......+...++.+.+...+.+. ...|+ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 78899999999999999863 221 123344444555577889999999999988 44444 677888888999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 334 QFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 334 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
+++.+...+....... + .....+..+...+...|.++.+...+.+...
T Consensus 217 ~~~~a~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 217 KYEEALEYYEKALELD-P-DNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cHHHHHHHHHHHHhhC-c-ccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999988 6 4455666666666677778888888777664
No 272
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.45 E-value=0.085 Score=39.59 Aligned_cols=128 Identities=12% Similarity=0.132 Sum_probs=85.2
Q ss_pred HHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChHH
Q 048364 21 HILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCE 99 (400)
Q Consensus 21 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 99 (400)
.+++.+.+.+.+....++++.+...+...+....+.++..| +.++.+...++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 46777888889999999999999877666788889999999 88877888888874332 444567777778888888
Q ss_pred HHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccc
Q 048364 100 ARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGS 163 (400)
Q Consensus 100 a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~ 163 (400)
|.-++.++...+.. +..+...++++.|.+++.+ .++...|..++..|...+.
T Consensus 89 a~~Ly~~~~~~~~a-----l~i~~~~~~~~~a~e~~~~-------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 89 AVYLYSKLGNHDEA-----LEILHKLKDYEEAIEYAKK-------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHCCTTHTTC-----SSTSSSTHCSCCCTTTGGG-------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHcccHHHH-----HHHHHHHccHHHHHHHHHh-------cCcHHHHHHHHHHHHhcCc
Confidence 88887776532111 1113344566666644322 2345677777777665554
No 273
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.14 E-value=0.7 Score=36.08 Aligned_cols=94 Identities=14% Similarity=0.078 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhc---cCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHH---
Q 048364 288 QHYGCMVDLFGKAGFLEEAYEVIRTM---RLEP--NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT--- 359 (400)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 359 (400)
..+..+...|.+.|+.+.|.+.|.++ ...| -...+-.+|+.....+++..+...+.++...-....+...-+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 44666777777777777777777776 1112 233455666677777777777777666655431101111111
Q ss_pred -HHHHHhhcccchHHHHHHHHHH
Q 048364 360 -LICDLYTMNEKWEGAERVRKLM 381 (400)
Q Consensus 360 -~l~~~~~~~g~~~~a~~~~~~m 381 (400)
.-+..+...|+|..|-+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 1111234556777776665443
No 274
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.11 E-value=3.3 Score=39.85 Aligned_cols=141 Identities=13% Similarity=0.086 Sum_probs=72.6
Q ss_pred HHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 048364 193 DMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRK 272 (400)
Q Consensus 193 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 272 (400)
+.+.+.|++++|...|-+...-- --..++.-|....+..+-..+++.+.+.|.. +...-..|+.+|.+.++.++..+
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~~l--e~s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~e 452 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIGFL--EPSEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTE 452 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHcccC--ChHHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHH
Confidence 33445666666666655443211 1112344445555555556666666666654 44445566667777777666666
Q ss_pred HHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048364 273 YFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQA 345 (400)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 345 (400)
+.+... +..+.-| ....+..+.+.+-.++|..+-.+.+. ....... .+-..+++++|.+++..+
T Consensus 453 fI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~~--he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 453 FISKCD-KGEWFFD---VETALEILRKSNYLDEAELLATKFKK--HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHHHHHHhcc--CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 555444 2111112 23345555555656666555555432 2222222 233456777777777654
No 275
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.10 E-value=0.93 Score=35.35 Aligned_cols=86 Identities=12% Similarity=-0.005 Sum_probs=41.1
Q ss_pred HHHhcCChhhHHHHHHHhhhhcCCCCChhhHH-----HHHHHHHhcCChHHHHHHHHhc-cCCccHHHHHHHHHHHHhcC
Q 048364 260 ACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG-----CMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWGSFLAACKEHK 333 (400)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~~ 333 (400)
.+...+++++|...++..... |....+. .|.+.....|.+++|+..++.. +-.-.......-.+.+...|
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg 173 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKG 173 (207)
T ss_pred HHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcC
Confidence 345566666666666555421 1111222 2333445556666666666554 11111122233334555666
Q ss_pred CHHHHHHHHHHHHHcC
Q 048364 334 QFDMAERVIKQALRMV 349 (400)
Q Consensus 334 ~~~~a~~~~~~~~~~~ 349 (400)
+-++|..-|++.+..+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 6666666666665554
No 276
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.10 E-value=1.7 Score=33.18 Aligned_cols=127 Identities=17% Similarity=0.086 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHH-----HHHHhCCChhhHHHHHHHHHHCCCCCCHH-HHHHHH
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALI-----CGSAHRGYSEDALSLFEMMQATGVKPNEM-TFTGVL 258 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~ 258 (400)
...|..-++ ..+.+..++|+.-|..+.+.+...|-.|. ......|+...|...|++.-.....|... -..-|=
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 334444333 35678889999999999887666665543 34677899999999999987765555433 112221
Q ss_pred --HHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc
Q 048364 259 --TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 259 --~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
-.+...|.++....-.+-+... +.+.....-..|.-+-.+.|++.+|.+.|..+
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 2356778888888877777632 33333444566777778999999999999988
No 277
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.06 E-value=0.33 Score=37.82 Aligned_cols=99 Identities=16% Similarity=0.088 Sum_probs=68.5
Q ss_pred HHHhcCChhhHHHHHHHhhhhcCCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc-HHHHHHHHHHHHhc
Q 048364 260 ACVHTGLVDEGRKYFKMIDEEYDLEPR-----IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN-VIIWGSFLAACKEH 332 (400)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~-~~~~~~l~~~~~~~ 332 (400)
-+...|++++|..-|...... +++. ...|..-..++.+.+.++.|.+-..+. .+.|. ......-..+|-+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 467789999999999988853 3332 234555566788888888888877766 55563 22333345678888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCchHHHHHH
Q 048364 333 KQFDMAERVIKQALRMVKPENDGGVFTLIC 362 (400)
Q Consensus 333 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 362 (400)
.++++|+.-|.++.+.. | ....+-...+
T Consensus 182 ek~eealeDyKki~E~d-P-s~~ear~~i~ 209 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD-P-SRREAREAIA 209 (271)
T ss_pred hhHHHHHHHHHHHHHhC-c-chHHHHHHHH
Confidence 89999999999999988 7 3334444433
No 278
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.96 E-value=0.14 Score=29.10 Aligned_cols=38 Identities=11% Similarity=-0.010 Sum_probs=28.0
Q ss_pred hhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhh
Q 048364 17 FSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVAT 55 (400)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 55 (400)
.++..+..++.+.|++++|.++|+++++..+. |...+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~ 39 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWR 39 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHH
Confidence 45777888888889999999999888886543 343443
No 279
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.92 E-value=1.9 Score=33.02 Aligned_cols=100 Identities=10% Similarity=0.071 Sum_probs=71.6
Q ss_pred HHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCC--ChHHHHHHHhhCCCCCh
Q 048364 36 HHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSG--NVCEARDFFERMPLRNV 112 (400)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~ 112 (400)
.++.+.+.+.++.|+...+..++..+ +.|++.....++..-.-+|.......+-.+.... -.+-|++++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~---- 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG---- 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----
Confidence 45566667789999999999999999 9999999888887666555444333332222211 1455666666665
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHH
Q 048364 113 ASWSAMIAAYLNAGAYDPGLKLFREMI 139 (400)
Q Consensus 113 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 139 (400)
..+..+++.+...|++-+|+++.+...
T Consensus 90 ~~~~~iievLL~~g~vl~ALr~ar~~~ 116 (167)
T PF07035_consen 90 TAYEEIIEVLLSKGQVLEALRYARQYH 116 (167)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 356677888999999999999998764
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.91 E-value=0.17 Score=27.33 Aligned_cols=23 Identities=9% Similarity=0.151 Sum_probs=10.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 048364 322 WGSFLAACKEHKQFDMAERVIKQ 344 (400)
Q Consensus 322 ~~~l~~~~~~~~~~~~a~~~~~~ 344 (400)
|..|...|.+.|++++|+.++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444455555555555555554
No 281
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.89 E-value=3.6 Score=34.97 Aligned_cols=14 Identities=7% Similarity=0.033 Sum_probs=7.5
Q ss_pred hcccchHHHHHHHH
Q 048364 366 TMNEKWEGAERVRK 379 (400)
Q Consensus 366 ~~~g~~~~a~~~~~ 379 (400)
.+.++|++|.+.++
T Consensus 257 ~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 257 YKAKNYDEAIEWYE 270 (278)
T ss_pred HhhcCHHHHHHHHH
Confidence 34555555555554
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.83 E-value=0.08 Score=28.62 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=23.1
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 357 VFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 357 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
++..|..+|.+.|++++|++++++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 478899999999999999999999663
No 283
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.81 E-value=0.52 Score=38.92 Aligned_cols=32 Identities=16% Similarity=0.216 Sum_probs=24.4
Q ss_pred hhhhhhHHHhccccchHHHHHHHHHHHHhcCC
Q 048364 169 GKSAHGFIVKNEWELNEQIATILVDMYAKCGF 200 (400)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 200 (400)
+..+++.|...|+.||..+-..|++++.+.+.
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 67777778888888888887788887776654
No 284
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.71 E-value=3.3 Score=33.98 Aligned_cols=55 Identities=11% Similarity=0.135 Sum_probs=39.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc---hHHHHHHHHhhcccchHHHHHHHHHH
Q 048364 325 FLAACKEHKQFDMAERVIKQALRMVKPENDG---GVFTLICDLYTMNEKWEGAERVRKLM 381 (400)
Q Consensus 325 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m 381 (400)
+.+-|.+.|.+..|..-+++|++.- | ... ..+..+..+|...|-.++|...-+-+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y-~-~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENY-P-DTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcc-c-cccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 4456788888888888888888875 4 333 35556667788888888887765443
No 285
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.59 E-value=0.3 Score=25.61 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 321 IWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 321 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
.+..+...+...|++++|.+.+++.++..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 44556666677777777777777777666
No 286
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.56 E-value=0.27 Score=25.92 Aligned_cols=30 Identities=13% Similarity=0.077 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 320 IIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
.+|..+..+|...|++++|+..++++++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 356667777777777777777777777766
No 287
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.24 E-value=0.77 Score=31.42 Aligned_cols=60 Identities=10% Similarity=0.148 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHH
Q 048364 234 DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295 (400)
Q Consensus 234 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (400)
+..+-+..+....+.|++....+.+++|.+.+++..|.++++-++.+.+.. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 455666666677788999999999999999999999999999998765533 336766654
No 288
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.06 E-value=2.8 Score=35.88 Aligned_cols=94 Identities=13% Similarity=0.194 Sum_probs=54.0
Q ss_pred HHHHHHHHHhccC-------CCcccHHHHHHHHHhCCCh----hhHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCC-
Q 048364 201 LKYALMVFELMEE-------RNVISWTALICGSAHRGYS----EDALSLFEMMQATGVKPNE--MTFTGVLTACVHTGL- 266 (400)
Q Consensus 201 ~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~----~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~- 266 (400)
..+|..+|+.|++ ++-.++..++.. ..++. +.+..+|+.+.+.|...+. .....++..+.....
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 4567778888876 233445444433 22332 5667788888887766543 233333332222222
Q ss_pred -hhhHHHHHHHhhhhcCCCCChhhHHHHHHHH
Q 048364 267 -VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297 (400)
Q Consensus 267 -~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (400)
...+..+++.+.+. ++++....|..+.-..
T Consensus 197 ~v~r~~~l~~~l~~~-~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 197 KVARVIELYNALKKN-GVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHc-CCccccccccHHHHHH
Confidence 34677788888854 8888777776654433
No 289
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.94 E-value=2.8 Score=33.43 Aligned_cols=29 Identities=14% Similarity=0.059 Sum_probs=18.0
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHHC
Q 048364 217 ISWTALICGSAHRGYSEDALSLFEMMQAT 245 (400)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 245 (400)
..||-+.--+...|+++.|.+.|+...+.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~EL 128 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLEL 128 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhcc
Confidence 45666666666666666666666666554
No 290
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.74 E-value=2.8 Score=30.45 Aligned_cols=137 Identities=13% Similarity=0.102 Sum_probs=79.2
Q ss_pred HHhcCCHHHHHHHHHhccC-CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 048364 195 YAKCGFLKYALMVFELMEE-RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKY 273 (400)
Q Consensus 195 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 273 (400)
..-.|..++..++..+... .+..-+|-+|.-....-+-+-..+.++.. |--.|.. ..|+.......
T Consensus 12 ~ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis----------~C~NlKrVi~C 78 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDIS----------KCGNLKRVIEC 78 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GG----------G-S-THHHHHH
T ss_pred HHHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHH---hhhcCch----------hhcchHHHHHH
Confidence 3456888888888887765 34445555554444444444444444443 3222322 22333333333
Q ss_pred HHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048364 274 FKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVK 350 (400)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 350 (400)
+-.+- .+.......+..+..+|+-+.-.+++.++ .-.|++...-.+..+|.+.|+..++.+++.++.+.|.
T Consensus 79 ~~~~n------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 79 YAKRN------KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHTT---------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHhc------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 32222 12334455667788888888888888887 4567788888888999999999999999999998883
No 291
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.63 E-value=1.2 Score=30.18 Aligned_cols=63 Identities=10% Similarity=0.130 Sum_probs=47.4
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHH
Q 048364 231 YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295 (400)
Q Consensus 231 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (400)
+.-++.+-++.+......|++....+.+++|.+.+++..|.++++-++.+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 34456666777777788899999999999999999999999999988754433 3445665544
No 292
>PRK11906 transcriptional regulator; Provisional
Probab=92.11 E-value=8.8 Score=34.65 Aligned_cols=143 Identities=12% Similarity=0.066 Sum_probs=94.2
Q ss_pred CHHHHHHHHHhcc---CCC---cccHHHHHHHHHhC---------CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048364 200 FLKYALMVFELME---ERN---VISWTALICGSAHR---------GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264 (400)
Q Consensus 200 ~~~~A~~~~~~~~---~~~---~~~~~~l~~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 264 (400)
..+.|..+|.+.. +-| ...|..+..++... ....+|.++-++..+.+ +-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3567888898887 433 33455444443321 22345666666666664 33777777777777788
Q ss_pred CChhhHHHHHHHhhhhcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHH---HHHHHHHHHHhcCCHHHHH
Q 048364 265 GLVDEGRKYFKMIDEEYDLEPRI-QHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVI---IWGSFLAACKEHKQFDMAE 339 (400)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~---~~~~l~~~~~~~~~~~~a~ 339 (400)
++++.|...|++.. .+.|+. ..|....-...-.|+.++|.+.+++. ...|... .....+..|+.. ..+.|+
T Consensus 352 ~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 88999999999998 455653 45555566667799999999999995 7777543 333444466554 577888
Q ss_pred HHHHHHHH
Q 048364 340 RVIKQALR 347 (400)
Q Consensus 340 ~~~~~~~~ 347 (400)
+++-+-.+
T Consensus 428 ~~~~~~~~ 435 (458)
T PRK11906 428 KLYYKETE 435 (458)
T ss_pred HHHhhccc
Confidence 87765433
No 293
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.95 E-value=1.8 Score=36.25 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--------cCCccHHHHHHH
Q 048364 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--------RLEPNVIIWGSF 325 (400)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--------~~~p~~~~~~~l 325 (400)
+..++..+...|+.+.+...++.+.. --+-+...|..++.+|.+.|+...|...|+.+ |+.|...+....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 33444444455555555555555542 11224445555555555555555555555444 455555444433
Q ss_pred HH
Q 048364 326 LA 327 (400)
Q Consensus 326 ~~ 327 (400)
..
T Consensus 234 ~~ 235 (280)
T COG3629 234 EE 235 (280)
T ss_pred HH
Confidence 33
No 294
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.89 E-value=2.8 Score=37.62 Aligned_cols=86 Identities=12% Similarity=0.102 Sum_probs=39.9
Q ss_pred HhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-c-CCccHHHHHHHHHHHHhcCCHHHHH
Q 048364 262 VHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-R-LEPNVIIWGSFLAACKEHKQFDMAE 339 (400)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~ 339 (400)
...|.++.+.+.+....+ -+.....+..++++...+.|++++|...-..| + ..-+..............|-++++.
T Consensus 334 ~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHH
Confidence 344555555555554442 22233444555555555555555555555554 1 1112222222222333444555555
Q ss_pred HHHHHHHHcC
Q 048364 340 RVIKQALRMV 349 (400)
Q Consensus 340 ~~~~~~~~~~ 349 (400)
-.|++....+
T Consensus 412 ~~wk~~~~~~ 421 (831)
T PRK15180 412 HYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccC
Confidence 5555555555
No 295
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.77 E-value=4.5 Score=37.50 Aligned_cols=125 Identities=19% Similarity=0.082 Sum_probs=58.6
Q ss_pred hcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 048364 197 KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKM 276 (400)
Q Consensus 197 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 276 (400)
-.|+++.|..++..+.+ ...+.++.-+.+.|-.++|+++- ..|+. -| ....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s-------~D~d~-rF----elal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELS-------TDPDQ-RF----ELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCch---hhhhhHHhHhhhccchHhhhhcC-------CChhh-hh----hhhhhcCcHHHHHHHHHh
Confidence 34566666555544442 22333444445555555554431 11111 11 122345666666555443
Q ss_pred hhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 277 IDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
.. +..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+-+....+-....+.+
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 32 23446666666666666666666665541 13334444444455444444444444444
No 296
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.76 E-value=0.42 Score=40.57 Aligned_cols=89 Identities=13% Similarity=0.042 Sum_probs=66.2
Q ss_pred HHHHhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCC-ccHHHHHHHHHHHHhcCCH
Q 048364 259 TACVHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLE-PNVIIWGSFLAACKEHKQF 335 (400)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~ 335 (400)
.-|.++|.+++|+..|.... ...| ++.++..-..+|.+...+..|+.-.... .+. .-...|..-+.+-...|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 35888999999999998877 3455 8888888889999999998887766655 211 1223455555555567788
Q ss_pred HHHHHHHHHHHHcCCC
Q 048364 336 DMAERVIKQALRMVKP 351 (400)
Q Consensus 336 ~~a~~~~~~~~~~~~~ 351 (400)
.+|.+-++.++++. |
T Consensus 182 ~EAKkD~E~vL~LE-P 196 (536)
T KOG4648|consen 182 MEAKKDCETVLALE-P 196 (536)
T ss_pred HHHHHhHHHHHhhC-c
Confidence 88888888888888 7
No 297
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.57 E-value=2.1 Score=32.42 Aligned_cols=117 Identities=15% Similarity=0.142 Sum_probs=69.1
Q ss_pred HHHHHHHHH---HHhcCChhhHHHHHHHhhhhcCCCCChhhHH-HHHHHHHhcCChHHHHHHHHhc-cCCccHHHHHHHH
Q 048364 252 MTFTGVLTA---CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG-CMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWGSFL 326 (400)
Q Consensus 252 ~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~l~ 326 (400)
...+.|+.. -.+.++.+++..++.-+. -+.|...... .-...+...|++.+|..+|+++ .-.|....-..|+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALl 84 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHH
Confidence 344444443 456788999999998887 4566543332 2344567899999999999999 4345444455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHH
Q 048364 327 AACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAE 375 (400)
Q Consensus 327 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 375 (400)
..|....+-..=...-+++.+.+ + ++.+-. ++..+....+...|.
T Consensus 85 A~CL~~~~D~~Wr~~A~evle~~-~--d~~a~~-Lv~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 85 ALCLYALGDPSWRRYADEVLESG-A--DPDARA-LVRALLARADLEPAH 129 (160)
T ss_pred HHHHHHcCChHHHHHHHHHHhcC-C--ChHHHH-HHHHHHHhccccchh
Confidence 55555444444455566666666 4 444433 334444443434443
No 298
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.52 E-value=3.8 Score=34.66 Aligned_cols=48 Identities=15% Similarity=0.081 Sum_probs=25.5
Q ss_pred CChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc
Q 048364 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
-++++++.++..=. ++|+-||..+++.+++.+.+.+++.+|..+...|
T Consensus 114 y~pq~~i~~l~npI-qYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 114 YDPQKAIYTLVNPI-QYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred cChHHHHHHHhCcc-hhccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 34445555554444 4455555555555555555555555555555444
No 299
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.51 E-value=11 Score=34.46 Aligned_cols=173 Identities=10% Similarity=0.074 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048364 184 NEQIATILVDMYAKCGFLKYALMVFELMEE--RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261 (400)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 261 (400)
|.....+++..+..+..+.-.+.+..+|.. .+-..|..++++|... ..++-..+|+++.+.... |...-.-|...|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y 142 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY 142 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence 444455666667666666667777776664 4556677777777776 456677777777665332 222223333333
Q ss_pred HhcCChhhHHHHHHHhhhhcCCCCC------hhhHHHHHHHHHhcCChHHHHHHHHhc----cCCccHHHHHHHHHHHHh
Q 048364 262 VHTGLVDEGRKYFKMIDEEYDLEPR------IQHYGCMVDLFGKAGFLEEAYEVIRTM----RLEPNVIIWGSFLAACKE 331 (400)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~p~~~~~~~l~~~~~~ 331 (400)
..++.+.+..+|.++..+ +-|. ...|..+... -..+.+..+.+..++ |...-...+.-+-.-|..
T Consensus 143 -Ekik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 143 -EKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred -HHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 346667777777666642 2221 1233333221 134455555555555 333344455555566677
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHh
Q 048364 332 HKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365 (400)
Q Consensus 332 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 365 (400)
..++++|++++..+.+.+ - .+..+-..++..+
T Consensus 218 ~eN~~eai~Ilk~il~~d-~-k~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEHD-E-KDVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhhc-c-hhhhHHHHHHHHH
Confidence 777777777777777666 4 4555555554443
No 300
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.50 E-value=6.5 Score=31.86 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=19.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 326 LAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 326 ~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
...-...+++.+|+++|+++....
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334457789999999999998876
No 301
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.48 E-value=14 Score=35.61 Aligned_cols=168 Identities=9% Similarity=0.105 Sum_probs=95.9
Q ss_pred HHhcccchhHHHHHHHHHHHHhCccc---chhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChHH
Q 048364 24 KSCTHFNNLTVIHHLHSHILKLGFIS---HVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCE 99 (400)
Q Consensus 24 ~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 99 (400)
+-+.+.+.+++|+++-+... |..| -...+...+..+ ..|++++|-...-.|...+..-|..-+..+...++...
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 34445566666666655432 2233 234566667777 88888888888888888888888877777777777655
Q ss_pred HHHHHhhCCC-CChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHh
Q 048364 100 ARDFFERMPL-RNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178 (400)
Q Consensus 100 a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~ 178 (400)
...++=.-.. -+...|..++-.+.. .....+++... ..+...|..+--.-+-..++.+
T Consensus 442 Ia~~lPt~~~rL~p~vYemvLve~L~----~~~~~F~e~i~-----~Wp~~Lys~l~iisa~~~q~~q------------ 500 (846)
T KOG2066|consen 442 IAPYLPTGPPRLKPLVYEMVLVEFLA----SDVKGFLELIK-----EWPGHLYSVLTIISATEPQIKQ------------ 500 (846)
T ss_pred hhccCCCCCcccCchHHHHHHHHHHH----HHHHHHHHHHH-----hCChhhhhhhHHHhhcchHHHh------------
Confidence 4444332222 255677777777766 22222222222 1222233322221111111111
Q ss_pred ccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCc
Q 048364 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNV 216 (400)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 216 (400)
. .-+...-..|+..|...+++..|..++-...++++
T Consensus 501 ~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 501 N--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred h--ccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 1 01122333488999999999999999988876543
No 302
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.09 E-value=2.4 Score=29.15 Aligned_cols=48 Identities=21% Similarity=0.349 Sum_probs=33.3
Q ss_pred ccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHH
Q 048364 313 MRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362 (400)
Q Consensus 313 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 362 (400)
+.+.|+..+..+.+++|.+.+++..|.++++-+..+-.+ ....|..++
T Consensus 39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~l 86 (108)
T PF02284_consen 39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYIL 86 (108)
T ss_dssp SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHH
Confidence 378888889999999999999999999999888877623 333665554
No 303
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.95 E-value=9.4 Score=32.72 Aligned_cols=141 Identities=9% Similarity=0.157 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c----CChhhHHHHHHHhhhhcCCCC--ChhhHHHHHHHHHhcCCh-
Q 048364 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVH--T----GLVDEGRKYFKMIDEEYDLEP--RIQHYGCMVDLFGKAGFL- 303 (400)
Q Consensus 233 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~- 303 (400)
++.+.+++.|.+.|..-+..+|.+....... . .....|..+|+.|++++.+-- +...+..++.. ..++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4566788899999988887777664443333 2 235678889999997755432 33334444322 34443
Q ss_pred ---HHHHHHHHhc---cCCc-c-HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHH
Q 048364 304 ---EEAYEVIRTM---RLEP-N-VIIWGSFLAACKEHK--QFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEG 373 (400)
Q Consensus 304 ---~~a~~~~~~~---~~~p-~-~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 373 (400)
+.++.+|+.+ |+.. | ......++..+-... ....+..+++.+.+.+. +.....|..++-...-.+..++
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~-kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGV-KIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCC-ccccccccHHHHHHhcCCchHH
Confidence 3445555555 5444 2 233333333332221 25578889999999884 3666666666554444444323
Q ss_pred HHH
Q 048364 374 AER 376 (400)
Q Consensus 374 a~~ 376 (400)
...
T Consensus 236 ~~~ 238 (297)
T PF13170_consen 236 IVE 238 (297)
T ss_pred HHH
Confidence 333
No 304
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.87 E-value=0.31 Score=36.50 Aligned_cols=84 Identities=18% Similarity=0.175 Sum_probs=56.0
Q ss_pred HHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChh
Q 048364 154 VLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSE 233 (400)
Q Consensus 154 ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 233 (400)
++..+.+.+.... ...+++.+...+...+....+.++..|++.++.++..++++... ..-...++..|.+.|.++
T Consensus 13 vi~~~~~~~~~~~--l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 13 VISAFEERNQPEE--LIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---NYDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CHHHCTTTT-GGG--CTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---SS-CTHHHHHHHTTTSHH
T ss_pred HHHHHHhCCCHHH--HHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---ccCHHHHHHHHHhcchHH
Confidence 4566667777777 77888888876666678888888888888877777777766322 233345566666677777
Q ss_pred hHHHHHHHH
Q 048364 234 DALSLFEMM 242 (400)
Q Consensus 234 ~a~~~~~~m 242 (400)
++.-++.++
T Consensus 88 ~a~~Ly~~~ 96 (143)
T PF00637_consen 88 EAVYLYSKL 96 (143)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHc
Confidence 776666553
No 305
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=90.84 E-value=9.5 Score=32.57 Aligned_cols=24 Identities=4% Similarity=-0.015 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHh
Q 048364 254 FTGVLTACVHTGLVDEGRKYFKMI 277 (400)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~ 277 (400)
......-|++.|+.+.|.+.+...
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHH
Confidence 333444455555555555555433
No 306
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.83 E-value=5.8 Score=30.09 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=38.3
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChhhHHHHHHHhhhh
Q 048364 224 CGSAHRGYSEDALSLFEMMQATGVKPNEMTFT-GVLTACVHTGLVDEGRKYFKMIDEE 280 (400)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (400)
..-...++.+++..++..+.-. .|...... .-...+...|++.+|..+|+.+..+
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3445678899999999998875 44433222 1223357789999999999998753
No 307
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.75 E-value=0.37 Score=25.38 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc
Q 048364 290 YGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
|..+..+|...|++++|+..|++.
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~a 27 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRA 27 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHH
Confidence 444455555555555555555444
No 308
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.61 E-value=0.8 Score=25.29 Aligned_cols=28 Identities=14% Similarity=0.297 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048364 320 IIWGSFLAACKEHKQFDMAERVIKQALR 347 (400)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (400)
.+++.+...|...|++++|..+++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666666666666666666666554
No 309
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.50 E-value=31 Score=38.01 Aligned_cols=309 Identities=11% Similarity=0.068 Sum_probs=163.4
Q ss_pred HhCCHHHHHHHHhhC----CCC--ChhhHHHHHHHHHcCCChHHHHHHHhh-CCCCChhhHHHHHHHHHhcCCcchHHHH
Q 048364 62 VVTSFGFARKLFDEL----PER--NAVTWNTMIKGYSKSGNVCEARDFFER-MPLRNVASWSAMIAAYLNAGAYDPGLKL 134 (400)
Q Consensus 62 ~~g~~~~a~~~~~~~----~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 134 (400)
+++.+..|...++.- .+. ....|..+...|+.-+++|...-+... ...|+. + .-+......|+++.|...
T Consensus 1395 rc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl--~-~qil~~e~~g~~~da~~C 1471 (2382)
T KOG0890|consen 1395 RCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL--Y-QQILEHEASGNWADAAAC 1471 (2382)
T ss_pred hhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH--H-HHHHHHHhhccHHHHHHH
Confidence 889999999999883 222 223344555589999999888888774 333332 2 234456788999999999
Q ss_pred HHHHHhcCCCCCC-HHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC
Q 048364 135 FREMISNEGLTPD-QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE 213 (400)
Q Consensus 135 ~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 213 (400)
|+.+. +..|+ ..+++.++..-...+.+.. .....+....+.-+-....++.=+.+--+.++++....... +
T Consensus 1472 ye~~~---q~~p~~~~~~~g~l~sml~~~~l~t--~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~ 1543 (2382)
T KOG0890|consen 1472 YERLI---QKDPDKEKHHSGVLKSMLAIQHLST--EILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS---D 1543 (2382)
T ss_pred HHHhh---cCCCccccchhhHHHhhhcccchhH--HHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh---c
Confidence 99998 55666 5677777777766676665 33333322222211112222333344467788887777665 4
Q ss_pred CCcccHHHH--HHHHHhCC--ChhhHHHHHHHHHHCCCCC--------C-HHHHHHHHHHHHhcCChhhHHHHHHHhhhh
Q 048364 214 RNVISWTAL--ICGSAHRG--YSEDALSLFEMMQATGVKP--------N-EMTFTGVLTACVHTGLVDEGRKYFKMIDEE 280 (400)
Q Consensus 214 ~~~~~~~~l--~~~~~~~~--~~~~a~~~~~~m~~~~~~p--------~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (400)
.+...|... +..+.+.. +.-.-.+..+.+++.-+.| + ...|..++..+.-.. .+.-.+.+......
T Consensus 1544 ~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-l~~~~~~l~~~s~~ 1622 (2382)
T KOG0890|consen 1544 RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-LENSIEELKKVSYD 1622 (2382)
T ss_pred ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-HHHHHHHhhccCcc
Confidence 455555544 22322222 2111112333333221111 0 123333333322111 11111111111100
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc----cCCc-----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 281 YDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM----RLEP-----NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
....-+...|..-++.=....+..+-.--+++. ...| -..+|-...+.....|.++.|...+-.+.+.. +
T Consensus 1623 ~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~ 1701 (2382)
T KOG0890|consen 1623 EDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR-L 1701 (2382)
T ss_pred ccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-c
Confidence 000111111222221111111111111111111 1122 23577788888888999999988877777766 3
Q ss_pred CCCchHHHHHHHHhhcccchHHHHHHHHHHhcccc
Q 048364 352 ENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386 (400)
Q Consensus 352 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 386 (400)
+..+...+......|+...|+.++++..+...
T Consensus 1702 ---~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1702 ---PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred ---chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 46778888888899999999999888875443
No 310
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.47 E-value=2.4 Score=28.76 Aligned_cols=47 Identities=19% Similarity=0.357 Sum_probs=32.1
Q ss_pred cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHH
Q 048364 314 RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362 (400)
Q Consensus 314 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 362 (400)
.+.|+..+..+.+++|.+.+++..|.++++-++.+- . .+...|..++
T Consensus 37 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~-~~~~~y~~~l 83 (103)
T cd00923 37 DLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-G-AHKEIYPYIL 83 (103)
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-c-CchhhHHHHH
Confidence 677788888888888888888888888888777554 2 2333454443
No 311
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.39 E-value=9.2 Score=31.70 Aligned_cols=185 Identities=12% Similarity=0.115 Sum_probs=112.0
Q ss_pred cCCHHHHHHHHHhccC--CC-----cccHHHHHHHHHhCCChhhHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHhcC
Q 048364 198 CGFLKYALMVFELMEE--RN-----VISWTALICGSAHRGYSEDALSLFEMMQAT---GV--KPNEMTFTGVLTACVHTG 265 (400)
Q Consensus 198 ~g~~~~A~~~~~~~~~--~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~--~p~~~~~~~l~~~~~~~~ 265 (400)
..+.++|..-|.++.+ +. -.+...++..+.+.|++++.+..|.+|... .+ .-+..+.++++...+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3467777777777664 11 123445677888888888888888877542 11 124456677777666666
Q ss_pred ChhhHHHHHHHhhhh----cCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--cC-----Ccc-------HHHHHHHHH
Q 048364 266 LVDEGRKYFKMIDEE----YDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--RL-----EPN-------VIIWGSFLA 327 (400)
Q Consensus 266 ~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~-----~p~-------~~~~~~l~~ 327 (400)
+.+....+|+.-... .+-+.-..+-..|...|...|.+.+..++++++ .+ ..| ...|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 665555555433211 122222334456778888888888888888877 10 111 235666677
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHH----hhcccchHHHHH-HHHHHh
Q 048364 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDL----YTMNEKWEGAER-VRKLML 382 (400)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~a~~-~~~~m~ 382 (400)
.|..+.+-.....++++.+.....-|.+.....+-.+ ..+.|.|++|.. +|+...
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 8888888888888888877655322455444333222 346788888764 444444
No 312
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.13 E-value=15 Score=33.65 Aligned_cols=162 Identities=17% Similarity=0.183 Sum_probs=115.4
Q ss_pred CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHH
Q 048364 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294 (400)
Q Consensus 215 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 294 (400)
|....-+++..+..+-.+.-...+-.+|..-| -+...|..++++|... ..++-..+++++.+ +.+ .|+..-..|.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve-~df-nDvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVE-YDF-NDVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHH-hcc-hhHHHHHHHH
Confidence 44566778888888888898999999999875 3678899999999888 56778888998884 233 2344444555
Q ss_pred HHHHhcCChHHHHHHHHhc--cCCc---c---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhh
Q 048364 295 DLFGKAGFLEEAYEVIRTM--RLEP---N---VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366 (400)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~--~~~p---~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 366 (400)
..|-+ ++..++..+|.++ .+.| + ...|..+...- ..+.+....+..++.....-..-...+..+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 55555 8889999999888 4444 1 12455444321 45778888888888776533234456666668899
Q ss_pred cccchHHHHHHHHHHhcc
Q 048364 367 MNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 367 ~~g~~~~a~~~~~~m~~~ 384 (400)
...+|++|+++++.+.++
T Consensus 217 ~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 217 ENENWTEAIRILKHILEH 234 (711)
T ss_pred cccCHHHHHHHHHHHhhh
Confidence 999999999999966553
No 313
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.75 E-value=11 Score=31.39 Aligned_cols=82 Identities=13% Similarity=0.227 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC--------C-------CcccHHHHHHHHHhCCChhhHHHHHHHHHHCC-CCCCHHH
Q 048364 190 ILVDMYAKCGFLKYALMVFELMEE--------R-------NVISWTALICGSAHRGYSEDALSLFEMMQATG-VKPNEMT 253 (400)
Q Consensus 190 ~l~~~~~~~g~~~~A~~~~~~~~~--------~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~ 253 (400)
.|...|...|.+.+..++++++.+ . -...|..=|+.|....+-.....+|++..... -.|.+..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 345555555666666666655542 0 12345555666766666666666776655432 2333333
Q ss_pred HHHHHHHH-----HhcCChhhHHH
Q 048364 254 FTGVLTAC-----VHTGLVDEGRK 272 (400)
Q Consensus 254 ~~~l~~~~-----~~~~~~~~a~~ 272 (400)
. .+|+-| .+.|++++|-.
T Consensus 230 m-GvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 230 M-GVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred H-hHHHHcCCccccccchHHHHHh
Confidence 2 233333 34566666543
No 314
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.70 E-value=0.54 Score=24.60 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=24.3
Q ss_pred hHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 356 GVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 356 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
..+..++.+|...|++++|++.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5678899999999999999999998875
No 315
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.56 E-value=2.8 Score=31.19 Aligned_cols=79 Identities=13% Similarity=0.181 Sum_probs=51.8
Q ss_pred hhHHHHHHHH---HhcCChHHHHHHHHhc-cCCccH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHH
Q 048364 288 QHYGCMVDLF---GKAGFLEEAYEVIRTM-RLEPNV---IIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360 (400)
Q Consensus 288 ~~~~~l~~~~---~~~g~~~~a~~~~~~~-~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 360 (400)
.+.+.||+.. ...++++++..+++.| -+.|+. .++.. ..+...|++++|.++|++..+.. + ..+..-..
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~-~-~~p~~kAL 83 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSA-G-APPYGKAL 83 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccC-C-CchHHHHH
Confidence 3444454433 4588999999999999 455644 34443 44778999999999999998887 4 33433344
Q ss_pred HHHHhhcccc
Q 048364 361 ICDLYTMNEK 370 (400)
Q Consensus 361 l~~~~~~~g~ 370 (400)
+..++.-.|+
T Consensus 84 ~A~CL~al~D 93 (153)
T TIGR02561 84 LALCLNAKGD 93 (153)
T ss_pred HHHHHHhcCC
Confidence 4444444454
No 316
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.32 E-value=1.1 Score=23.09 Aligned_cols=25 Identities=8% Similarity=0.129 Sum_probs=15.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 325 FLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 325 l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
+..++.+.|++++|.+.|+++++..
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHC
Confidence 4445555666666666666666655
No 317
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.28 E-value=5.7 Score=36.87 Aligned_cols=46 Identities=22% Similarity=0.180 Sum_probs=26.8
Q ss_pred HcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 048364 92 SKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI 139 (400)
Q Consensus 92 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 139 (400)
.+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|....
T Consensus 648 l~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hhcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 34555555555544332 44556666666666666666666665554
No 318
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.13 E-value=1.1 Score=23.47 Aligned_cols=29 Identities=10% Similarity=0.148 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 321 IWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 321 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
+|..+...|...|++++|...|++.++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45555666666667777777666666655
No 319
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.77 E-value=1.8 Score=34.44 Aligned_cols=60 Identities=10% Similarity=0.035 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 290 YGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
.+.-++.+.+.+...+|+...++- +-+| |..+-..+++.++-.|++++|..-++-.-...
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~ 65 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLS 65 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcC
Confidence 344566677777888888777665 4455 44556667788888888888887777776665
No 320
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.52 E-value=0.63 Score=22.83 Aligned_cols=22 Identities=14% Similarity=0.069 Sum_probs=11.7
Q ss_pred HHHHHHHhhcccchHHHHHHHH
Q 048364 358 FTLICDLYTMNEKWEGAERVRK 379 (400)
Q Consensus 358 ~~~l~~~~~~~g~~~~a~~~~~ 379 (400)
...+..++...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445555555555555555543
No 321
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.95 E-value=0.82 Score=25.25 Aligned_cols=29 Identities=14% Similarity=0.271 Sum_probs=24.9
Q ss_pred chHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 355 GGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 355 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
..+++.|+..|...|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35788999999999999999999998875
No 322
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.85 E-value=4 Score=35.00 Aligned_cols=93 Identities=17% Similarity=0.108 Sum_probs=61.6
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcC
Q 048364 223 ICGSAHRGYSEDALSLFEMMQATGVKP-NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301 (400)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 301 (400)
..-|.+.|.+++|+..|..-... .| |.+++..-..+|.+..++..|+.=-.....- + ..-...|..-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-d-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-D-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-h-HHHHHHHHHHHHHHHHHh
Confidence 45799999999999999887664 45 8899999999999999888776655544420 0 011223444444444455
Q ss_pred ChHHHHHHHHhc-cCCccH
Q 048364 302 FLEEAYEVIRTM-RLEPNV 319 (400)
Q Consensus 302 ~~~~a~~~~~~~-~~~p~~ 319 (400)
+..+|.+-++.. .+.|+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHhhCccc
Confidence 566666555555 677764
No 323
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.82 E-value=5.9 Score=31.32 Aligned_cols=73 Identities=12% Similarity=0.009 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcC--CCCChhhHHHHHHHHHhcCChHHH
Q 048364 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD--LEPRIQHYGCMVDLFGKAGFLEEA 306 (400)
Q Consensus 233 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a 306 (400)
+.|.+.|-++...+.--++.....|...|. ..+.+++.+++.+..+-++ -.+|+..+.+|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 345555555544443333333333333332 4455555555544443211 133455555555555555555544
No 324
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.63 E-value=0.71 Score=23.86 Aligned_cols=28 Identities=7% Similarity=0.117 Sum_probs=24.1
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 357 VFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 357 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
++..++.++.+.|++++|.+.|+++++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567888999999999999999998763
No 325
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.44 E-value=0.63 Score=24.67 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=11.7
Q ss_pred ChhhHHHHHHHHHhcCChHHHH
Q 048364 286 RIQHYGCMVDLFGKAGFLEEAY 307 (400)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~ 307 (400)
+...|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4455555555555555555553
No 326
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.19 E-value=0.8 Score=26.03 Aligned_cols=28 Identities=14% Similarity=0.174 Sum_probs=21.0
Q ss_pred HHHHHHhhcccchHHHHHHHHHHhcccc
Q 048364 359 TLICDLYTMNEKWEGAERVRKLMLNQNV 386 (400)
Q Consensus 359 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 386 (400)
..|..+|...|+.+.|.+++++....|-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 3567788888888888888888875443
No 327
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.07 E-value=5.5 Score=31.90 Aligned_cols=59 Identities=8% Similarity=-0.029 Sum_probs=38.0
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhh
Q 048364 219 WTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMID 278 (400)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (400)
.+.-++.+.+.+...+++...++-.+.+ +.|..+-..+++.++-.|++++|..-++-.-
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 3445566677777777777777666552 2245556667777777777777766555443
No 328
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.90 E-value=13 Score=29.20 Aligned_cols=78 Identities=6% Similarity=-0.012 Sum_probs=43.5
Q ss_pred HhCCHHHHHHHHhhCCC-CChhhH-----HHHHHHHHcCCChHHHHHHHhhCCCCChhh--HHHHHHHHHhcCCcchHHH
Q 048364 62 VVTSFGFARKLFDELPE-RNAVTW-----NTMIKGYSKSGNVCEARDFFERMPLRNVAS--WSAMIAAYLNAGAYDPGLK 133 (400)
Q Consensus 62 ~~g~~~~a~~~~~~~~~-~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~ 133 (400)
.+|++++|...++.... +....+ -.|.+.....|.+|+|+.+++....++-.+ ...-.+.+...|+-++|..
T Consensus 101 e~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ 180 (207)
T COG2976 101 EANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARA 180 (207)
T ss_pred hhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHH
Confidence 66666666666665542 221222 223345566666777776666665553332 2223345666666777776
Q ss_pred HHHHHH
Q 048364 134 LFREMI 139 (400)
Q Consensus 134 ~~~~m~ 139 (400)
-|++.+
T Consensus 181 ay~kAl 186 (207)
T COG2976 181 AYEKAL 186 (207)
T ss_pred HHHHHH
Confidence 666666
No 329
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.75 E-value=34 Score=33.72 Aligned_cols=196 Identities=13% Similarity=0.121 Sum_probs=95.9
Q ss_pred HHhcCCHHHHHHHHHhccC----CCc-------ccHHHHH-HHHHhCCChhhHHHHHHHHHHC----CCCCCHHHHHHHH
Q 048364 195 YAKCGFLKYALMVFELMEE----RNV-------ISWTALI-CGSAHRGYSEDALSLFEMMQAT----GVKPNEMTFTGVL 258 (400)
Q Consensus 195 ~~~~g~~~~A~~~~~~~~~----~~~-------~~~~~l~-~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~l~ 258 (400)
.....++++|..++.+... |+. ..++.+- ......|++++|.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3456777777777766542 221 1233332 2234567778887777666543 1222344455566
Q ss_pred HHHHhcCChhhHHHHHHHhhhhcCCCCChh---hHHHHH--HHHHhcCChHHH--HHHHHhc-----cCCc----cHHHH
Q 048364 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQ---HYGCMV--DLFGKAGFLEEA--YEVIRTM-----RLEP----NVIIW 322 (400)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~l~--~~~~~~g~~~~a--~~~~~~~-----~~~p----~~~~~ 322 (400)
.+..-.|++++|..+.....+. .-.-+.. .|..+. ..+..+|+...+ +..|... +-.| -..++
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 6666678888887777655432 1112222 222222 234455632222 2222222 1111 22334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCCCchH--HHHHHHHhhcccchHHHHHHHHHHhccccccccCccc
Q 048364 323 GSFLAACKEHKQFDMAERVIKQALRMVK---PENDGGV--FTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSV 394 (400)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 394 (400)
..+..++.+ .+.+..-.....+.+. |.+-... +..|+..+...|+.++|...+.++......+.+.+.|
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence 444444444 3333333333333221 2111112 2256667777788888888887777655555444444
No 330
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.56 E-value=5.6 Score=35.81 Aligned_cols=88 Identities=11% Similarity=0.096 Sum_probs=50.7
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCC
Q 048364 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302 (400)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 302 (400)
...+...|+++.+...+...... +.....+..++++...+.|+++.|..+-+.|... .+ -++.........--..|-
T Consensus 330 ~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~-ei-e~~ei~~iaa~sa~~l~~ 406 (831)
T PRK15180 330 SVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSN-EI-EDEEVLTVAAGSADALQL 406 (831)
T ss_pred HHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcc-cc-CChhheeeecccHHHHhH
Confidence 34455667777777766654432 3345566677777777777777777777766632 22 223333222233344566
Q ss_pred hHHHHHHHHhc
Q 048364 303 LEEAYEVIRTM 313 (400)
Q Consensus 303 ~~~a~~~~~~~ 313 (400)
++++...++..
T Consensus 407 ~d~~~~~wk~~ 417 (831)
T PRK15180 407 FDKSYHYWKRV 417 (831)
T ss_pred HHHHHHHHHHH
Confidence 67777777666
No 331
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.50 E-value=1.3 Score=23.15 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=25.2
Q ss_pred hHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 356 GVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 356 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
.+|..++..|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688899999999999999999998876
No 332
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=86.46 E-value=28 Score=32.50 Aligned_cols=123 Identities=12% Similarity=0.196 Sum_probs=86.8
Q ss_pred CchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH--HhCCHHHHHHHHhhCCC---CChhhHHHHHH
Q 048364 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY--VVTSFGFARKLFDELPE---RNAVTWNTMIK 89 (400)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~g~~~~a~~~~~~~~~---~~~~~~~~l~~ 89 (400)
+-..++.|+.---.....+.+..++..++.. .|...-|-.-..-+ +.|..+.+.++|++... .+...|...+.
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLA 121 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3344566666655555667777777777653 46666555545555 89999999999998875 35666776666
Q ss_pred HHH-cCCChHHHHHHHhhCCCC------ChhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 048364 90 GYS-KSGNVCEARDFFERMPLR------NVASWSAMIAAYLNAGAYDPGLKLFREMI 139 (400)
Q Consensus 90 ~~~-~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 139 (400)
.+. ..|+.+...+.|++...- +...|...|.--...+++.....+|+..+
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRil 178 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERIL 178 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 554 467788888888876522 44567777777777888999999999988
No 333
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.34 E-value=12 Score=28.03 Aligned_cols=50 Identities=8% Similarity=-0.025 Sum_probs=24.5
Q ss_pred ccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH--HhCCHHHHHHHHhhCCCC
Q 048364 28 HFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY--VVTSFGFARKLFDELPER 79 (400)
Q Consensus 28 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~g~~~~a~~~~~~~~~~ 79 (400)
..++++.+..+++.|.-. .|+..-...+-..+ ..|++++|..+|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 355666666666665543 23322222222222 556666666666666543
No 334
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=86.14 E-value=8.9 Score=26.37 Aligned_cols=61 Identities=21% Similarity=0.223 Sum_probs=40.1
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHH
Q 048364 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT 255 (400)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 255 (400)
+..+.+.|++++|..+.+....||...|-++-. .+.|..+++..-+.+|...| .|....|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 445667788888888887777777777766643 35666666666666666665 34444443
No 335
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=85.51 E-value=12 Score=27.35 Aligned_cols=44 Identities=7% Similarity=0.050 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHH
Q 048364 337 MAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKL 380 (400)
Q Consensus 337 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 380 (400)
.+..+|..|.+.++-...+..|..-+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 88899999999887556777888888888899999999988874
No 336
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.49 E-value=39 Score=33.15 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=20.9
Q ss_pred HHHHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHH
Q 048364 293 MVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDM 337 (400)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 337 (400)
++..+....+.+.+..+.+..+-. +...|..++..+++.+.++.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~ 754 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIED 754 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhh
Confidence 344444455555555555554311 44445555555555554333
No 337
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.91 E-value=5.4 Score=33.81 Aligned_cols=98 Identities=11% Similarity=0.064 Sum_probs=65.7
Q ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHhccC-CCc-----ccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHH
Q 048364 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEE-RNV-----ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT 255 (400)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 255 (400)
..+..+...++..-....+.+.+...+-+++. |+. .+-.+.++.+. .-++++++.++..=...|+-||.+++.
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHH
Confidence 33444444455555556677777777766654 221 22223333333 345678888888878889999999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhhh
Q 048364 256 GVLTACVHTGLVDEGRKYFKMIDEE 280 (400)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (400)
.+++.+.+.+++.+|.++.-.+..+
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999988877766643
No 338
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=84.80 E-value=23 Score=29.89 Aligned_cols=25 Identities=4% Similarity=0.038 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHH
Q 048364 252 MTFTGVLTACVHTGLVDEGRKYFKM 276 (400)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~ 276 (400)
..+..+..-|++.++.+.+.++..+
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~ 140 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRR 140 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3444445555555555555554443
No 339
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.74 E-value=27 Score=30.71 Aligned_cols=62 Identities=11% Similarity=0.012 Sum_probs=48.7
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHhccCC-------CcccHHHHHHHHHhCCChhhHHHHHHHHHH
Q 048364 183 LNEQIATILVDMYAKCGFLKYALMVFELMEER-------NVISWTALICGSAHRGYSEDALSLFEMMQA 244 (400)
Q Consensus 183 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 244 (400)
....++..++..+.+.|.++.|...+..+.+. .+...-.-+..+...|+..+|+..+++...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35567788888899999999999988888762 344555566778888999999999888776
No 340
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=84.59 E-value=32 Score=31.49 Aligned_cols=96 Identities=13% Similarity=0.196 Sum_probs=51.3
Q ss_pred CCHHHH-HHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHH---HhcCChHHHHHHHHhc--cCCccHHHH
Q 048364 249 PNEMTF-TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF---GKAGFLEEAYEVIRTM--RLEPNVIIW 322 (400)
Q Consensus 249 p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~--~~~p~~~~~ 322 (400)
|+..|+ +.++.-+-+.+-..+|.+.+..+.. -.+|+...|..+|+.= ..+| ...+.++++.+ .+..|+..|
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw 533 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLW 533 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHH
Confidence 344333 3445555566666666666666653 3344555565555532 2233 55566666666 112455555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 048364 323 GSFLAACKEHKQFDMAERVIKQALR 347 (400)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (400)
...+.--...|..+.+-.++.++.+
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHHH
Confidence 5555555566666666666655554
No 341
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.39 E-value=19 Score=28.61 Aligned_cols=94 Identities=14% Similarity=0.109 Sum_probs=63.0
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC-hhhHHHHHHH
Q 048364 223 ICGSAHRGYSEDALSLFEMMQATGVKPNE-----MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR-IQHYGCMVDL 296 (400)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~ 296 (400)
..-+.+.|++++|..-|.+.+.. +++.. ..|..-..++.+.+.++.|+.--.+.. .+.|+ ......-..+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai---el~pty~kAl~RRAea 177 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI---ELNPTYEKALERRAEA 177 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH---hcCchhHHHHHHHHHH
Confidence 34577889999999999998886 34433 234444556778888888877666665 23342 2223333457
Q ss_pred HHhcCChHHHHHHHHhc-cCCccHH
Q 048364 297 FGKAGFLEEAYEVIRTM-RLEPNVI 320 (400)
Q Consensus 297 ~~~~g~~~~a~~~~~~~-~~~p~~~ 320 (400)
|-+...+++|++=|..+ ...|...
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchH
Confidence 88888899999888888 5566554
No 342
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.35 E-value=2.7 Score=23.92 Aligned_cols=24 Identities=25% Similarity=0.148 Sum_probs=14.5
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHC
Q 048364 222 LICGSAHRGYSEDALSLFEMMQAT 245 (400)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~m~~~ 245 (400)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455566666666666666666544
No 343
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=84.02 E-value=19 Score=28.30 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=34.5
Q ss_pred CCCCCCchhHHHHHHHhcccc----hhHHHHHHHHHHHHhCcccc----hhhhhHHHHHH-HhCCHHHHHHHH
Q 048364 10 QSVPSDSFSILHILKSCTHFN----NLTVIHHLHSHILKLGFISH----VYVATSLLHEY-VVTSFGFARKLF 73 (400)
Q Consensus 10 ~g~~p~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~-~~g~~~~a~~~~ 73 (400)
.|.-++...++-++..+.+.. +.+.+..+=.+....++.++ ......-+..| +.||+..--.+|
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly 74 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLY 74 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHH
Confidence 477788888888877776543 44444444444444444432 22222333344 566665544444
No 344
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.58 E-value=11 Score=29.97 Aligned_cols=78 Identities=12% Similarity=0.174 Sum_probs=52.0
Q ss_pred HHHhcCChHHHHHHHHhc---cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCCchHHHHHHHHhhcccc
Q 048364 296 LFGKAGFLEEAYEVIRTM---RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP--ENDGGVFTLICDLYTMNEK 370 (400)
Q Consensus 296 ~~~~~g~~~~a~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 370 (400)
.+.+.|+ +.|.+.|-.+ +.--++.....+.. |....+.+++..++.++.+...+ .+++..+..|+..|.+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3445555 4566666666 22224444444444 44466888999999888886532 3578899999999999998
Q ss_pred hHHHH
Q 048364 371 WEGAE 375 (400)
Q Consensus 371 ~~~a~ 375 (400)
++.|-
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 88874
No 345
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=83.52 E-value=8.6 Score=25.66 Aligned_cols=65 Identities=11% Similarity=0.089 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChHHHH
Q 048364 35 IHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEAR 101 (400)
Q Consensus 35 a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 101 (400)
+.++++.+.+.|+- +......+-.+- ..|+.+.|.+++..++ +.+..|..++.++-..|+-+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 44566666666643 222223332322 4566777777777777 66666777777776666654443
No 346
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=83.11 E-value=83 Score=35.10 Aligned_cols=147 Identities=10% Similarity=0.028 Sum_probs=87.2
Q ss_pred HHHHHhcccchhHHHHHHHHHHHHhCc--ccchhhhhHHHHHH-HhCCHHHHHHHHhh-CCCCChhhHHHHHHHHHcCCC
Q 048364 21 HILKSCTHFNNLTVIHHLHSHILKLGF--ISHVYVATSLLHEY-VVTSFGFARKLFDE-LPERNAVTWNTMIKGYSKSGN 96 (400)
Q Consensus 21 ~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~-~~g~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 96 (400)
.+..+--+.+.+..|...++.-..... .-....+-.+...| .-+++|....+... ...|+. ..-|-.....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 344455577888888888887311111 11222333444467 77777777776663 323322 233445677899
Q ss_pred hHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHH-HHHHHHhhcccchhhhhhhhh
Q 048364 97 VCEARDFFERMPL--RN-VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTI-GAVLSGCSHLGSVGLLMGKSA 172 (400)
Q Consensus 97 ~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~ll~~~~~~~~~~~~~a~~~ 172 (400)
++.|...|+++.. |+ ..+++-++......|.++.++...+-.. . ...+....+ +.-+.+--+.++++. ....
T Consensus 1465 ~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~-~-~~se~~~~~~s~~~eaaW~l~qwD~--~e~~ 1540 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLI-I-NRSEEVDELNSLGVEAAWRLSQWDL--LESY 1540 (2382)
T ss_pred HHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchh-h-ccCHHHHHHHHHHHHHHhhhcchhh--hhhh
Confidence 9999999999873 33 5578877777777888888877665554 2 222333333 333444456667766 4444
Q ss_pred hh
Q 048364 173 HG 174 (400)
Q Consensus 173 ~~ 174 (400)
+.
T Consensus 1541 l~ 1542 (2382)
T KOG0890|consen 1541 LS 1542 (2382)
T ss_pred hh
Confidence 43
No 347
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=82.78 E-value=52 Score=32.54 Aligned_cols=180 Identities=14% Similarity=0.053 Sum_probs=94.7
Q ss_pred hcCCHHHHHHHHHhccC--------CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHH---HHH--HHHHh
Q 048364 197 KCGFLKYALMVFELMEE--------RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT---GVL--TACVH 263 (400)
Q Consensus 197 ~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---~l~--~~~~~ 263 (400)
..|+++.|.++.+...+ .....+..+..+..-.|++++|..+..+..+.--..+...+. .+. ..+..
T Consensus 470 ~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~ 549 (894)
T COG2909 470 NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEA 549 (894)
T ss_pred hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 45777777777665543 244566677777788889988888877665432222333222 222 22445
Q ss_pred cCC--hhhHHHHHHHhhhhcCCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHhc-----cCCcc--HH--HHHHHHH
Q 048364 264 TGL--VDEGRKYFKMIDEEYDLEPR-----IQHYGCMVDLFGKAGFLEEAYEVIRTM-----RLEPN--VI--IWGSFLA 327 (400)
Q Consensus 264 ~~~--~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~-----~~~p~--~~--~~~~l~~ 327 (400)
.|+ ..+....+............ ..++..+..++.+ .+.+..-.... ...|. .. .+..|+.
T Consensus 550 qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~ 626 (894)
T COG2909 550 QGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAE 626 (894)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHH
Confidence 563 23333344433322111111 2233334444444 44433333222 11222 12 2236777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchH----HHHHHH--HhhcccchHHHHHHHHH
Q 048364 328 ACKEHKQFDMAERVIKQALRMVKPENDGGV----FTLICD--LYTMNEKWEGAERVRKL 380 (400)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~l~~--~~~~~g~~~~a~~~~~~ 380 (400)
.....|+.++|...++++...... +.... ....+. .-...|+.+.+...+.+
T Consensus 627 l~~~~Gdl~~A~~~l~~~~~l~~~-~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 627 LEFLRGDLDKALAQLDELERLLLN-GQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcC-CCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 888899999999999998886631 22221 112222 23467888888776665
No 348
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.95 E-value=5.6 Score=33.35 Aligned_cols=60 Identities=13% Similarity=-0.024 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 321 IWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 321 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
+++...+.|...|.+.+|.++.++.+..+ | .+...+..|+..+...|+--.+.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-p-L~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-P-LSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-h-hhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34555678889999999999999999999 8 888999999999999999777777777664
No 349
>PRK09687 putative lyase; Provisional
Probab=81.47 E-value=32 Score=29.25 Aligned_cols=79 Identities=9% Similarity=-0.001 Sum_probs=48.9
Q ss_pred ccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCCh----HHHHHHHhhC--CCCChhhHHHHHH
Q 048364 48 ISHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNV----CEARDFFERM--PLRNVASWSAMIA 120 (400)
Q Consensus 48 ~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~--~~~~~~~~~~l~~ 120 (400)
.+|..+....+..+ ..|..+....+.+-...+|...-...+.++.+.|+. +++...+..+ ..++...-...+.
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~ 113 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAIN 113 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 35666666677777 666544444444434456777777778888888763 4677777765 3566666555565
Q ss_pred HHHhcC
Q 048364 121 AYLNAG 126 (400)
Q Consensus 121 ~~~~~g 126 (400)
++...+
T Consensus 114 aLG~~~ 119 (280)
T PRK09687 114 ATGHRC 119 (280)
T ss_pred HHhccc
Confidence 555543
No 350
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=81.24 E-value=3 Score=33.31 Aligned_cols=86 Identities=17% Similarity=0.226 Sum_probs=60.2
Q ss_pred HHhcCChhhHHHHHHHhhhhcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccH--HHHHHHHHHHHhcCCHH
Q 048364 261 CVHTGLVDEGRKYFKMIDEEYDLEPR-IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNV--IIWGSFLAACKEHKQFD 336 (400)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~--~~~~~l~~~~~~~~~~~ 336 (400)
|-..|-+.-|.-=|.+.. .+.|+ +.+||.+.--+...|+++.|.+.|+.. .+.|.- ...|.-| ++.-.|++.
T Consensus 75 YDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~ 150 (297)
T COG4785 75 YDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYK 150 (297)
T ss_pred hhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchH
Confidence 455666777766666665 45565 567888888888999999999999987 666632 2233322 344568899
Q ss_pred HHHHHHHHHHHcCCC
Q 048364 337 MAERVIKQALRMVKP 351 (400)
Q Consensus 337 ~a~~~~~~~~~~~~~ 351 (400)
.|.+-+...-..+ |
T Consensus 151 LAq~d~~~fYQ~D-~ 164 (297)
T COG4785 151 LAQDDLLAFYQDD-P 164 (297)
T ss_pred hhHHHHHHHHhcC-C
Confidence 9988888877777 6
No 351
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=81.03 E-value=4.7 Score=19.78 Aligned_cols=28 Identities=18% Similarity=0.095 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 322 WGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 322 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
|..+...+...|+++.|...+++.++..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 4444555555566666666665555443
No 352
>PRK10941 hypothetical protein; Provisional
Probab=80.57 E-value=11 Score=31.76 Aligned_cols=60 Identities=20% Similarity=0.108 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 322 WGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 322 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
.+.+-.+|.+.++++.|.+..+.+.... | .++.-+.--+..|.+.|.+..|..=++..++
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-P-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3445556677777777777777777777 6 6666666666667777777777666655544
No 353
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=80.52 E-value=7.2 Score=31.74 Aligned_cols=102 Identities=17% Similarity=0.158 Sum_probs=67.1
Q ss_pred HHhcCChhhHHHHHHHhhhhcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHHHHHH-HHHHHHhcCCHHH
Q 048364 261 CVHTGLVDEGRKYFKMIDEEYDLEPRI-QHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWGS-FLAACKEHKQFDM 337 (400)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~-l~~~~~~~~~~~~ 337 (400)
|....+++.|+..|.+.. .+.|+. .-|..-+.++.+..+++.+..=-.+. .+.||..--.. +..+......+++
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 555667888888777776 446766 45667777888888888887665555 77787664433 4445667778899
Q ss_pred HHHHHHHHHHcCC---CCCCchHHHHHHHHh
Q 048364 338 AERVIKQALRMVK---PENDGGVFTLICDLY 365 (400)
Q Consensus 338 a~~~~~~~~~~~~---~~~~~~~~~~l~~~~ 365 (400)
|+..+.++.+... +.+.......|..+-
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak 127 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAK 127 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 9999888865432 223444445554443
No 354
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=79.53 E-value=15 Score=25.84 Aligned_cols=28 Identities=18% Similarity=0.244 Sum_probs=22.6
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHH
Q 048364 217 ISWTALICGSAHRGYSEDALSLFEMMQA 244 (400)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 244 (400)
.-|..++..|...|..++|++++.++..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3577888888888888888888888766
No 355
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=79.49 E-value=14 Score=26.67 Aligned_cols=71 Identities=14% Similarity=0.227 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc
Q 048364 234 DALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 234 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
+..+-+..+...++.|++......+++|.+.+++..|.++|+-++.+.| +....|..++ ++...+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g--~~k~~Y~y~v---------~elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG--AQKQVYPYYV---------KELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc--cHHHHHHHHH---------HHHHHHHHHh
Confidence 3455566666778889999999999999999999999999998886433 3333455553 3445566666
Q ss_pred cC
Q 048364 314 RL 315 (400)
Q Consensus 314 ~~ 315 (400)
|+
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 54
No 356
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.43 E-value=4.1 Score=26.53 Aligned_cols=47 Identities=13% Similarity=0.073 Sum_probs=29.6
Q ss_pred hcCCHHHHHHHHHHHHHcCC-CCCCchHHHHHHHHhhcccchHHHHHH
Q 048364 331 EHKQFDMAERVIKQALRMVK-PENDGGVFTLICDLYTMNEKWEGAERV 377 (400)
Q Consensus 331 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~ 377 (400)
...+.++|+..|+.+++... ++.-..++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777652 112234555666677777777776654
No 357
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=78.46 E-value=16 Score=26.37 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=37.1
Q ss_pred HHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHH
Q 048364 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362 (400)
Q Consensus 307 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 362 (400)
+.-+-.+++.|+.......+++|.+.+|+..|.++|+-+..+- + +....|-.++
T Consensus 72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~-g-~~k~~Y~y~v 125 (149)
T KOG4077|consen 72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC-G-AQKQVYPYYV 125 (149)
T ss_pred HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc-c-cHHHHHHHHH
Confidence 3333334778888888888888888888888888888887766 3 3333454443
No 358
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=78.10 E-value=69 Score=31.01 Aligned_cols=85 Identities=11% Similarity=0.031 Sum_probs=37.1
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHh---c
Q 048364 224 CGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK---A 300 (400)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~ 300 (400)
..+.-.|+++.|++.+-+ ..+...+.+.+.+.+..+.-.+-.+... ..+.....-.|....+..||..|++ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 455677888888888766 2233445555555554432222111111 2222111111222556777777775 4
Q ss_pred CChHHHHHHHHhc
Q 048364 301 GFLEEAYEVIRTM 313 (400)
Q Consensus 301 g~~~~a~~~~~~~ 313 (400)
.+..+|.++|--+
T Consensus 341 td~~~Al~Y~~li 353 (613)
T PF04097_consen 341 TDPREALQYLYLI 353 (613)
T ss_dssp T-HHHHHHHHHGG
T ss_pred cCHHHHHHHHHHH
Confidence 5677788777776
No 359
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.01 E-value=36 Score=28.61 Aligned_cols=88 Identities=14% Similarity=0.053 Sum_probs=39.7
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHh---
Q 048364 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK--- 299 (400)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 299 (400)
|++++..++|.+++...-+--+.--+........-|-.|.+.+.+..+.++-...... .-.-+...|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHHHH
Confidence 4555666666655554333222111112223333334455666666555555555432 111222335555444432
Q ss_pred --cCChHHHHHHHH
Q 048364 300 --AGFLEEAYEVIR 311 (400)
Q Consensus 300 --~g~~~~a~~~~~ 311 (400)
.|.+++|+++..
T Consensus 169 lPLG~~~eAeelv~ 182 (309)
T PF07163_consen 169 LPLGHFSEAEELVV 182 (309)
T ss_pred hccccHHHHHHHHh
Confidence 466666665553
No 360
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=77.37 E-value=15 Score=34.22 Aligned_cols=131 Identities=15% Similarity=0.071 Sum_probs=76.5
Q ss_pred CCHHHHHHHHHHHHhc--CChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc--HHHHH
Q 048364 249 PNEMTFTGVLTACVHT--GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN--VIIWG 323 (400)
Q Consensus 249 p~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~--~~~~~ 323 (400)
|+..+..+++.-.... ...+-+..++..|.+ ...|--...|...-.+...|+...|...+... ...|. .+...
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v 646 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLV 646 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHH
Confidence 4555554444332221 122334444444442 33343333343333344567888888777766 44442 22344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 324 SFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 324 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
.|.....+.|-.-+|..++.+.+... . ..+-++..+.++|....+.+.|++.|++..+
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~-~-sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~ 704 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAIN-S-SEPLTFLSLGNAYLALKNISGALEAFRQALK 704 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhc-c-cCchHHHhcchhHHHHhhhHHHHHHHHHHHh
Confidence 45666666677777778887777776 4 5677778888888888888888887777654
No 361
>PRK11619 lytic murein transglycosylase; Provisional
Probab=76.64 E-value=77 Score=30.84 Aligned_cols=352 Identities=8% Similarity=-0.075 Sum_probs=166.8
Q ss_pred CCchhHHHHHHHhcccchhHHHHHHHHHHHHhC------------------cccchhhhhHHHHHHHhCCHHHHHHHHhh
Q 048364 14 SDSFSILHILKSCTHFNNLTVIHHLHSHILKLG------------------FISHVYVATSLLHEYVVTSFGFARKLFDE 75 (400)
Q Consensus 14 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------------------~~~~~~~~~~l~~~~~~g~~~~a~~~~~~ 75 (400)
.+...-.....+....|+.++|.+..+.+-..| .-.+...+..+..++..|+...|..+...
T Consensus 127 ~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~ 206 (644)
T PRK11619 127 KPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQ 206 (644)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 344445666777777777666655544443333 22222333333333355666666666665
Q ss_pred CCCCChhhHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHH---HHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHH--H
Q 048364 76 LPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWS---AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQM--T 150 (400)
Q Consensus 76 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~--~ 150 (400)
+..........++..... ...+..++.... ++...-. ..+.-+ ...+.+.|..++.......+..+... .
T Consensus 207 l~~~~~~~a~a~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~l~Rl-ar~d~~~A~~~~~~~~~~~~~~~~~~~~~ 281 (644)
T PRK11619 207 LPADYQTIASALIKLQND---PNTVETFARTTG-PTDFTRQMAAVAFASV-ARQDAENARLMIPSLVRAQKLNEDQRQEL 281 (644)
T ss_pred cChhHHHHHHHHHHHHHC---HHHHHHHhhccC-CChhhHHHHHHHHHHH-HHhCHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 532222223333333332 333333333321 2221111 111222 34456888999988753444443332 2
Q ss_pred HHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCC--C-cccHHHHHHHHH
Q 048364 151 IGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER--N-VISWTALICGSA 227 (400)
Q Consensus 151 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~ 227 (400)
...+.......+.... +...+....... .+......-+....+.++++.+...+..|... + ..-..=+..++.
T Consensus 282 ~~~lA~~~a~~~~~~~--a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~ 357 (644)
T PRK11619 282 RDIVAWRLMGNDVTDE--QAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLL 357 (644)
T ss_pred HHHHHHHHHhccCCHH--HHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHH
Confidence 2223222222211122 222222222111 23344444555666889999999999888651 2 222333556767
Q ss_pred hCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhh-hhcCCCCChhhHHHHHHHHHhcCChHHH
Q 048364 228 HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMID-EEYDLEPRIQHYGCMVDLFGKAGFLEEA 306 (400)
Q Consensus 228 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a 306 (400)
..|+.++|...|+++... . +|-.++.+ .+.|..-.. .. .... ....+... .-..-+..+...|+...|
T Consensus 358 ~~g~~~~A~~~~~~~a~~---~---~fYG~LAa-~~Lg~~~~~-~~-~~~~~~~~~~~~~--~~~~ra~~L~~~g~~~~a 426 (644)
T PRK11619 358 EQGRKAEAEEILRQLMQQ---R---GFYPMVAA-QRLGEEYPL-KI-DKAPKPDSALTQG--PEMARVRELMYWNMDNTA 426 (644)
T ss_pred HcCCHHHHHHHHHHHhcC---C---CcHHHHHH-HHcCCCCCC-CC-CCCCchhhhhccC--hHHHHHHHHHHCCCHHHH
Confidence 789999999999987431 1 23333322 223322000 00 0000 00000000 112234566778888899
Q ss_pred HHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCCchHHHHHHHHhhcccchHHHHHHHHHH
Q 048364 307 YEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM-----VKPENDGGVFTLICDLYTMNEKWEGAERVRKLM 381 (400)
Q Consensus 307 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 381 (400)
...+..+....+......+.....+.|.++.++......... ..| ..|...+..+.+.-..+.++-.--.-
T Consensus 427 ~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp----~~~~~~~~~~a~~~~v~~~lv~ai~r 502 (644)
T PRK11619 427 RSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFP----LAWNDEFRRYTSGKGIPQSYAMAIAR 502 (644)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCC----cchHHHHHHHHHHcCCCHHHHHHHHH
Confidence 888887722344455555666666778877777666543321 213 23444555554444444444332233
Q ss_pred hccccccc
Q 048364 382 LNQNVRKA 389 (400)
Q Consensus 382 ~~~~~~~~ 389 (400)
.+.++.|+
T Consensus 503 qES~f~p~ 510 (644)
T PRK11619 503 QESAWNPK 510 (644)
T ss_pred HhcCCCCC
Confidence 34555444
No 362
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.59 E-value=5.6 Score=25.92 Aligned_cols=44 Identities=9% Similarity=0.082 Sum_probs=17.4
Q ss_pred cCChhhHHHHHHHhhhhcCCCCC-hhhHHHHHHHHHhcCChHHHH
Q 048364 264 TGLVDEGRKYFKMIDEEYDLEPR-IQHYGCMVDLFGKAGFLEEAY 307 (400)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~ 307 (400)
.++.++|...|....++..-+++ ..++..++.+|+..|++.+++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREML 63 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444432221111 123334444444444444443
No 363
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.52 E-value=56 Score=29.16 Aligned_cols=60 Identities=25% Similarity=0.242 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccC------CCcccHHHHHHHHHhCCChhhHHHHHHHHHHC
Q 048364 186 QIATILVDMYAKCGFLKYALMVFELMEE------RNVISWTALICGSAHRGYSEDALSLFEMMQAT 245 (400)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 245 (400)
..+.-+.+.|..+|+++.|.+.|.+.++ .-+..|-.+|..-.-.|+|........+....
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 4556677778888888888888877554 12234555566666677777777777766553
No 364
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.47 E-value=40 Score=27.83 Aligned_cols=55 Identities=18% Similarity=0.050 Sum_probs=24.1
Q ss_pred HHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 295 DLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
+++...|++-++++.-.+. ...| |+..|-.-..+.+..-+.++|..=|..+++..
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 3344444444444444444 2222 33344333344444444455555555555544
No 365
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=76.31 E-value=11 Score=25.10 Aligned_cols=63 Identities=17% Similarity=0.207 Sum_probs=41.6
Q ss_pred HHHHHhhCCCCChhhHHHHHHHHH---cCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHH
Q 048364 69 ARKLFDELPERNAVTWNTMIKGYS---KSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGL 132 (400)
Q Consensus 69 a~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 132 (400)
+.++++...+.+..|..-.=..-+ ..|+.+.|.++++++. +.+..|..++.++...|+-.-|.
T Consensus 21 ~~~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 334455555554444443333333 5688888999999888 78888888888888887755543
No 366
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=76.28 E-value=11 Score=29.96 Aligned_cols=30 Identities=20% Similarity=0.117 Sum_probs=13.2
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHhc
Q 048364 284 EPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 284 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
.|++.+|..++.++...|+.++|.+..+++
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 367
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=76.08 E-value=42 Score=27.55 Aligned_cols=115 Identities=11% Similarity=0.051 Sum_probs=71.8
Q ss_pred HHhCCChhhHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhh-HHHHHHHHHhcCCh
Q 048364 226 SAHRGYSEDALSLFEMMQATGVKPNE-MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQH-YGCMVDLFGKAGFL 303 (400)
Q Consensus 226 ~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~ 303 (400)
|.....++.|+..|.+.... .|+. ..|+.=+.++.+..+++.+..=-...+ .+.|+..- ...+..++.....+
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrral---ql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRAL---QLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH---hcChHHHHHHHHHHHHHHhhccc
Confidence 45566788888877766654 6666 455666777788888887766555554 45666543 33455566677888
Q ss_pred HHHHHHHHhc-------cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048364 304 EEAYEVIRTM-------RLEPNVIIWGSFLAACKEHKQFDMAERVIKQA 345 (400)
Q Consensus 304 ~~a~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 345 (400)
++|...+++. .+.|-......|..+--..=...+..++.++.
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 8888888776 34444455666655544444444555544443
No 368
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=76.07 E-value=35 Score=26.61 Aligned_cols=28 Identities=14% Similarity=0.322 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCchHHHHHHHHh
Q 048364 335 FDMAERVIKQALRMVKPENDGGVFTLICDLY 365 (400)
Q Consensus 335 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 365 (400)
+++|...|+++.... | +..+|..-+...
T Consensus 96 F~kA~~~FqkAv~~~-P--~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 96 FEKATEYFQKAVDED-P--NNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHH--T--T-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-C--CcHHHHHHHHHH
Confidence 555666666666666 4 555565555444
No 369
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=76.01 E-value=14 Score=29.25 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=34.0
Q ss_pred cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 314 RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 314 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
...|+..+|..++.++...|+.++|.+..+++.... |
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ly-P 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLY-P 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 668999999999999999999999999999999888 6
No 370
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=75.39 E-value=16 Score=26.80 Aligned_cols=67 Identities=10% Similarity=0.088 Sum_probs=40.9
Q ss_pred CCChhhHHHHHHHHHhcCC---hHHHHHHHHhc-c-CCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 284 EPRIQHYGCMVDLFGKAGF---LEEAYEVIRTM-R-LEPN--VIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 284 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~-~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
.++..+--.+.-++.+..+ ..+...+++++ . -.|+ .....-|.-++.+.++++++.++++..++.. |
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e-~ 102 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE-P 102 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC-C
Confidence 4455555556666666554 34456666666 2 3342 2233445567778888888888888888877 6
No 371
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=75.27 E-value=28 Score=28.19 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=14.6
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 357 VFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 357 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
....++....+.|++++|.+.|.++...
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3344444455555555555555555543
No 372
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=75.00 E-value=9.1 Score=22.83 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=19.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 325 FLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 325 l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
+.-++.+.|++++|.+..+.+++.. |
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~e-P 32 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIE-P 32 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhC-C
Confidence 4556778888888888888888887 6
No 373
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=74.36 E-value=8.8 Score=23.77 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=8.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 048364 325 FLAACKEHKQFDMAERVIKQA 345 (400)
Q Consensus 325 l~~~~~~~~~~~~a~~~~~~~ 345 (400)
+|.++...|++++|.++++++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444433
No 374
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=74.19 E-value=58 Score=28.26 Aligned_cols=21 Identities=5% Similarity=0.042 Sum_probs=9.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 048364 327 AACKEHKQFDMAERVIKQALR 347 (400)
Q Consensus 327 ~~~~~~~~~~~a~~~~~~~~~ 347 (400)
+++...||..++.+.+++..+
T Consensus 123 r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 123 RLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHhcccHHHHHHHHHHHHH
Confidence 334444555555555444444
No 375
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=73.55 E-value=20 Score=30.74 Aligned_cols=58 Identities=10% Similarity=0.124 Sum_probs=34.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc
Q 048364 256 GVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
-+..+..+.|+..+|.+.++.+.++..+..-......|+.++....-+.+...++-+.
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455678888888888877754322222233456777777666666665555544
No 376
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=72.70 E-value=7.2 Score=32.99 Aligned_cols=43 Identities=16% Similarity=0.097 Sum_probs=34.5
Q ss_pred CCCCchh-HHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhh
Q 048364 12 VPSDSFS-ILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVA 54 (400)
Q Consensus 12 ~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 54 (400)
+.||..+ |+..|+...+.||+++|+++++++.+.|+..-..+|
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 4566555 679999999999999999999999999987444444
No 377
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=72.43 E-value=38 Score=28.53 Aligned_cols=19 Identities=16% Similarity=0.142 Sum_probs=9.7
Q ss_pred HHHHHhcCCcchHHHHHHH
Q 048364 119 IAAYLNAGAYDPGLKLFRE 137 (400)
Q Consensus 119 ~~~~~~~g~~~~a~~~~~~ 137 (400)
|.+++..|+|.+++...-+
T Consensus 90 IQALAEmnrWreVLsWvlq 108 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQ 108 (309)
T ss_pred HHHHHHHhhHHHHHHHHHH
Confidence 4455555555555554433
No 378
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=72.05 E-value=26 Score=23.88 Aligned_cols=25 Identities=12% Similarity=0.360 Sum_probs=14.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 325 FLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 325 l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
+.......|++++|...+++.++..
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3344556666666666666666543
No 379
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.20 E-value=98 Score=29.55 Aligned_cols=175 Identities=12% Similarity=0.035 Sum_probs=87.5
Q ss_pred HHHHHHHHHhccCC-CcccHHHHHHH-----HHhCCChhhHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC--
Q 048364 201 LKYALMVFELMEER-NVISWTALICG-----SAHRGYSEDALSLFEMMQA-------TGVKPNEMTFTGVLTACVHTG-- 265 (400)
Q Consensus 201 ~~~A~~~~~~~~~~-~~~~~~~l~~~-----~~~~~~~~~a~~~~~~m~~-------~~~~p~~~~~~~l~~~~~~~~-- 265 (400)
...|.++++...+. +...-..+... +....+.+.|+..|+.+.+ .| +.....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 34566666655542 33222222222 3345677777777777755 44 2223445555555532
Q ss_pred ---ChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhc---CChHHHHHHHHhc---cCCccHHHHHHHHHHH--HhcCC
Q 048364 266 ---LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA---GFLEEAYEVIRTM---RLEPNVIIWGSFLAAC--KEHKQ 334 (400)
Q Consensus 266 ---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~---~~~p~~~~~~~l~~~~--~~~~~ 334 (400)
+.+.|..++...-. .| .|+...+ +..+|... .+..+|.++|... | .++...+..+.... ....+
T Consensus 305 ~~~d~~~A~~~~~~aA~-~g-~~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-~~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAE-LG-NPDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAG-HILAIYRLALCYELGLGVERN 379 (552)
T ss_pred ccccHHHHHHHHHHHHh-cC-CchHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCcCCC
Confidence 45667777777663 23 2333322 33333322 3567788888777 2 22222221111111 12336
Q ss_pred HHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcccc
Q 048364 335 FDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386 (400)
Q Consensus 335 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 386 (400)
...|..++.+..+++ + +....-......+.. ++++.+.-.+..+...|.
T Consensus 380 ~~~A~~~~k~aA~~g-~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-N-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHHHcc-C-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 778888888888777 4 232222223333333 666666655555555444
No 380
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=70.61 E-value=30 Score=26.99 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcc
Q 048364 336 DMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368 (400)
Q Consensus 336 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 368 (400)
++|+.-|++++..+ | ....++..+..+|...
T Consensus 52 edAisK~eeAL~I~-P-~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 52 EDAISKFEEALKIN-P-NKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHH--T-T-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-C-chHHHHHHHHHHHHHH
Confidence 34444444444455 5 4455555555555433
No 381
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=70.56 E-value=16 Score=24.89 Aligned_cols=55 Identities=11% Similarity=0.114 Sum_probs=37.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCC-------chHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 329 CKEHKQFDMAERVIKQALRMVKPEND-------GGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 329 ~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
..+.|++..|.+.+.+..+......+ ......+.......|++++|...+++.++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45778888887776666654421111 23344566667788999999999998875
No 382
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=70.17 E-value=86 Score=28.48 Aligned_cols=92 Identities=8% Similarity=0.085 Sum_probs=63.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccCC--ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhc
Q 048364 290 YGCMVDLFGKAGFLEEAYEVIRTMRLE--PNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM 367 (400)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 367 (400)
...|+.-|...|+..+|.+.+++++.+ .-...+.+++.+.-+.|+-.....+++.....+. .|-+.+-++|.+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl-----IT~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL-----ITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc-----eeHHHhhhhhhh
Confidence 345677788889999999999998643 2456788888888888888888888888777662 344555555544
Q ss_pred cc--------chHHHHHHHHHHhcccc
Q 048364 368 NE--------KWEGAERVRKLMLNQNV 386 (400)
Q Consensus 368 ~g--------~~~~a~~~~~~m~~~~~ 386 (400)
-. +...|.+.|+...+.+.
T Consensus 587 V~dsl~DlsLDvPna~ekf~~~Ve~~~ 613 (645)
T KOG0403|consen 587 VYDSLPDLSLDVPNAYEKFERYVEECF 613 (645)
T ss_pred hhccCcccccCCCcHHHHHHHHHHHHH
Confidence 32 34456666666655444
No 383
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=70.14 E-value=1.1e+02 Score=29.86 Aligned_cols=184 Identities=9% Similarity=0.081 Sum_probs=101.9
Q ss_pred hhhhhHHHhccccc---hHHHHHHHHHHHHhcCCHHHHHHHHHhccC-CCc----------ccHHHHHHHHHhCCChhhH
Q 048364 170 KSAHGFIVKNEWEL---NEQIATILVDMYAKCGFLKYALMVFELMEE-RNV----------ISWTALICGSAHRGYSEDA 235 (400)
Q Consensus 170 ~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----------~~~~~l~~~~~~~~~~~~a 235 (400)
..+++.|..+--.| ...+...++-.|....+++...++.+.+.. ||. ..|.-.++--.+-|+-++|
T Consensus 183 ~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakA 262 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKA 262 (1226)
T ss_pred HHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHH
Confidence 34455565554444 345666777888888999999998887765 321 1233333333455777888
Q ss_pred HHHHHHHHHC--CCCCCHHH-----HHHH--HHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHH
Q 048364 236 LSLFEMMQAT--GVKPNEMT-----FTGV--LTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306 (400)
Q Consensus 236 ~~~~~~m~~~--~~~p~~~~-----~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 306 (400)
+...-.|.+. .+.||... |.-+ -+.|...+..+.|...|++.- .+.|+...--.+...+...|..-+-
T Consensus 263 L~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~Fen 339 (1226)
T KOG4279|consen 263 LNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHFEN 339 (1226)
T ss_pred HHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhccc
Confidence 8887777654 35666543 2211 122445566778888888776 4566654433333333333322111
Q ss_pred HHHHHhc--------cCCc---cHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHH
Q 048364 307 YEVIRTM--------RLEP---NVIIW---GSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358 (400)
Q Consensus 307 ~~~~~~~--------~~~p---~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 358 (400)
-.-++.+ |.+- +...| ...+.+-.-.+++.+|.+.-+.|.+.. | |....-
T Consensus 340 s~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk-~-P~WYLk 403 (1226)
T KOG4279|consen 340 SLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLK-P-PVWYLK 403 (1226)
T ss_pred hHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccC-C-ceehHH
Confidence 1111111 2111 11111 223444556789999999999999988 6 554433
No 384
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=70.02 E-value=1.1e+02 Score=29.65 Aligned_cols=175 Identities=12% Similarity=0.093 Sum_probs=98.1
Q ss_pred HHHHHHHHHH-hCccc--chhhhhHHHHHH--HhCCHHHHHHHHhhCCC----CCh-----hhHHHHHHHHHcCCChHHH
Q 048364 35 IHHLHSHILK-LGFIS--HVYVATSLLHEY--VVTSFGFARKLFDELPE----RNA-----VTWNTMIKGYSKSGNVCEA 100 (400)
Q Consensus 35 a~~~~~~~~~-~~~~~--~~~~~~~l~~~~--~~g~~~~a~~~~~~~~~----~~~-----~~~~~l~~~~~~~~~~~~a 100 (400)
|.+.++.+.+ ..+.| ...++-.+...+ ...+++.|+..+++... ++. ..-..++..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 4555666653 23333 344666677777 88889999999987642 111 12334566676666655 8
Q ss_pred HHHHhhCCCC----C----hhhHHHH-HHHHHhcCCcchHHHHHHHHHhcCC--CCCCHHHHHHHHHHhhcc--cchhhh
Q 048364 101 RDFFERMPLR----N----VASWSAM-IAAYLNAGAYDPGLKLFREMISNEG--LTPDQMTIGAVLSGCSHL--GSVGLL 167 (400)
Q Consensus 101 ~~~~~~~~~~----~----~~~~~~l-~~~~~~~g~~~~a~~~~~~m~~~~~--~~p~~~~~~~ll~~~~~~--~~~~~~ 167 (400)
....++..+. . ...+..+ +..+...+++..|++.++.+..... ..|-...+..++.+.... +..+.
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d- 197 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD- 197 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh-
Confidence 8777765411 1 1222233 2333344799999999988874443 334445555566655433 33334
Q ss_pred hhhhhhhHHHhcc---------ccchHHHHHHHHHHH--HhcCCHHHHHHHHHhcc
Q 048364 168 MGKSAHGFIVKNE---------WELNEQIATILVDMY--AKCGFLKYALMVFELME 212 (400)
Q Consensus 168 ~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~ 212 (400)
+.+..+.+.... -.|...++..+++.+ ...|+++.+...++++.
T Consensus 198 -~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 198 -VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred -HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444443221 133455666666554 45777777766655443
No 385
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=70.01 E-value=19 Score=24.39 Aligned_cols=54 Identities=9% Similarity=0.072 Sum_probs=36.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-CchHHHHHHHHhhcccchH
Q 048364 318 NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN-DGGVFTLICDLYTMNEKWE 372 (400)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 372 (400)
|...--.+...+...|++++|++.+-++++.. +.. +...-..++..+...|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d-r~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRD-RDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccccccHHHHHHHHHHHHcCCCC
Confidence 45566677778888889999988888888877 422 4566677777777777643
No 386
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=69.25 E-value=87 Score=28.15 Aligned_cols=17 Identities=12% Similarity=-0.142 Sum_probs=9.2
Q ss_pred hcCCHHHHHHHHHhccC
Q 048364 197 KCGFLKYALMVFELMEE 213 (400)
Q Consensus 197 ~~g~~~~A~~~~~~~~~ 213 (400)
+.+++..|.++|+.+.+
T Consensus 143 n~~~y~aA~~~l~~l~~ 159 (379)
T PF09670_consen 143 NRYDYGAAARILEELLR 159 (379)
T ss_pred hcCCHHHHHHHHHHHHH
Confidence 45555555555555543
No 387
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.10 E-value=37 Score=23.49 Aligned_cols=49 Identities=10% Similarity=0.152 Sum_probs=29.0
Q ss_pred HHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 048364 89 KGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI 139 (400)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 139 (400)
..+...|++++|..+.+.+..||...|.+|-. .+.|..+++..-+..|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 34556677777777766666666666655543 24555555555555554
No 388
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=67.40 E-value=50 Score=24.74 Aligned_cols=76 Identities=9% Similarity=0.189 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC---------CCcccHHHHHHHHHhCCC-hhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 048364 189 TILVDMYAKCGFLKYALMVFELMEE---------RNVISWTALICGSAHRGY-SEDALSLFEMMQATGVKPNEMTFTGVL 258 (400)
Q Consensus 189 ~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~ 258 (400)
+.++.-....+++.....+++.+.. .+...|.+++.+..+..- ---+..+|.-|++.+.+++...|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4444444444455544444444421 244455555555544333 223445555555555566666666666
Q ss_pred HHHHhc
Q 048364 259 TACVHT 264 (400)
Q Consensus 259 ~~~~~~ 264 (400)
.++.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 655443
No 389
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=67.39 E-value=40 Score=23.64 Aligned_cols=76 Identities=12% Similarity=0.027 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHhCcccchhhhhHHHHHHHhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChHHHHHHHhhCC
Q 048364 31 NLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP 108 (400)
Q Consensus 31 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 108 (400)
..++|..+.+.+...+-.-...+.-.+......|++++|+..=.....||...|-++-. .+.|-.+++...+.++.
T Consensus 21 cH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp -HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 45666666666666543212222211111116666666644334444455555544332 34555555555555444
No 390
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=66.96 E-value=41 Score=23.59 Aligned_cols=52 Identities=15% Similarity=0.168 Sum_probs=22.6
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHC
Q 048364 192 VDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT 245 (400)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 245 (400)
+..+.+.|+++.|...=.....||...|-+|- -.+.|..+++...+.++...
T Consensus 47 ~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 47 LSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLASS 98 (116)
T ss_dssp HHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT-
T ss_pred HHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHhC
Confidence 33455566666663222222235555554442 23555555555555555444
No 391
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=66.85 E-value=42 Score=31.50 Aligned_cols=98 Identities=13% Similarity=0.063 Sum_probs=72.2
Q ss_pred cCChhhHHHHHHHhhhhcCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHhc-cC-CccHHHHHHHHHHHHhcCCHHHHH
Q 048364 264 TGLVDEGRKYFKMIDEEYDLEP--RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RL-EPNVIIWGSFLAACKEHKQFDMAE 339 (400)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~ 339 (400)
.|+...|.+.+..... ..| .......|.....+.|...+|-.++... .+ ....-++-.+.+++....++++|+
T Consensus 620 ~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 6788889988887763 233 2234455677777888888888877665 22 234457777888999999999999
Q ss_pred HHHHHHHHcCCCCCCchHHHHHHHHhh
Q 048364 340 RVIKQALRMVKPENDGGVFTLICDLYT 366 (400)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~l~~~~~ 366 (400)
+.|+++.++. | .++..-+.|...-+
T Consensus 697 ~~~~~a~~~~-~-~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLT-T-KCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcC-C-CChhhHHHHHHHHH
Confidence 9999999998 7 77777777665544
No 392
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=66.28 E-value=79 Score=26.59 Aligned_cols=140 Identities=11% Similarity=-0.046 Sum_probs=66.0
Q ss_pred hcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHH----HHHHHHHCCCCCCHHHHHHHHHHHHhcCChh-hHH
Q 048364 197 KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS----LFEMMQATGVKPNEMTFTGVLTACVHTGLVD-EGR 271 (400)
Q Consensus 197 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~ 271 (400)
+++++++|.+++..- ...+.+.|+..-|.+ +++-..+.+.++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 456666666665432 123344444433333 2333334455556555555555544433211 122
Q ss_pred HHHHHhhh----hcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc------------------cCC--ccHHHHHHHHH
Q 048364 272 KYFKMIDE----EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM------------------RLE--PNVIIWGSFLA 327 (400)
Q Consensus 272 ~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~------------------~~~--p~~~~~~~l~~ 327 (400)
++.+.+.+ ......++.....+...|.+.|++.+|+..|-.- +.+ +|...-. .+-
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~R-aVL 149 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIAR-AVL 149 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHH-HHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHH-HHH
Confidence 22222221 1122235667777888888888888877655332 111 1222222 223
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 048364 328 ACKEHKQFDMAERVIKQALRM 348 (400)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~ 348 (400)
-|...++...|...++...+.
T Consensus 150 ~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 150 QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 355677899999888777766
No 393
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=65.91 E-value=43 Score=30.11 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhhhc-----CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc
Q 048364 254 FTGVLTACVHTGLVDEGRKYFKMIDEEY-----DLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
...|++.++-.|++..|.++++.+.-.. .+++ ...++-.+.-+|.-.+++.+|.+.|...
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788899999998887664211 1111 3455667778888888899998888876
No 394
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=65.86 E-value=55 Score=28.08 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=35.8
Q ss_pred HHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 048364 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI 139 (400)
Q Consensus 85 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 139 (400)
-.++....+.++..+..+.++.+. ....-...+..+...|++..|++++.+..
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~ 154 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQ 154 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 334455556666666666666553 33444556777888999999999998886
No 395
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=65.54 E-value=9.8 Score=27.81 Aligned_cols=34 Identities=26% Similarity=0.449 Sum_probs=26.7
Q ss_pred HHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Q 048364 122 YLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGC 158 (400)
Q Consensus 122 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~ 158 (400)
..+.|.-.+|..+|.+|+ ..|-+|| .|+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML-~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKML-ERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHH-hCCCCCc--cHHHHHHHh
Confidence 445677889999999999 8899998 466666554
No 396
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=65.41 E-value=32 Score=29.73 Aligned_cols=92 Identities=11% Similarity=0.003 Sum_probs=52.6
Q ss_pred HHHHHHhcCChhhHHHHHHHhhhhcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccH-HHHHHHHHHHHhc
Q 048364 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPR--IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNV-IIWGSFLAACKEH 332 (400)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~-~~~~~l~~~~~~~ 332 (400)
=..-|.+..++..|...|..-.+...-.|+ ...|+.-..+-.-.|++..|+.=.... .+.|+. ..|-.=..++...
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLEL 166 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHH
Confidence 334466677777777777666544333333 344555555555566666666655555 555543 2444444556666
Q ss_pred CCHHHHHHHHHHHHHc
Q 048364 333 KQFDMAERVIKQALRM 348 (400)
Q Consensus 333 ~~~~~a~~~~~~~~~~ 348 (400)
.++++|....++....
T Consensus 167 e~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 167 ERFAEAVNWCEEGLQI 182 (390)
T ss_pred HHHHHHHHHHhhhhhh
Confidence 6677777666666443
No 397
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=65.24 E-value=12 Score=23.13 Aligned_cols=47 Identities=17% Similarity=0.002 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 334 QFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 334 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
.++...++++.+.... -|..-...++.+|...|++++|.++++++.+
T Consensus 5 ~~~~~~~~~~~lR~~R---HD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLRAQR---HDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4555666666665554 3556667888999999999999999998865
No 398
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=64.33 E-value=78 Score=25.81 Aligned_cols=100 Identities=13% Similarity=0.101 Sum_probs=55.9
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC---ChhhH--HHHHHHHHhcCChHHHHHHHHhc---cCCcc
Q 048364 247 VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP---RIQHY--GCMVDLFGKAGFLEEAYEVIRTM---RLEPN 318 (400)
Q Consensus 247 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~g~~~~a~~~~~~~---~~~p~ 318 (400)
+.+...-++.|+--|.-...+.+|...|..-. ++.| +...+ ..-|+.....|+.++|.+....+ -+.-|
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~---~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES---GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcccc---CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Confidence 45566666777666666666666666554333 4444 22232 23456667788888888888777 12223
Q ss_pred HHHHHHHHH----HHHhcCCHHHHHHHHHHHHHcC
Q 048364 319 VIIWGSFLA----ACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 319 ~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
...+-.+.. -..+.|..++|+++.+.=....
T Consensus 99 ~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~ 133 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIREGKTEEALEFAQTKLAPF 133 (228)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcccc
Confidence 222211111 2356677777777776655544
No 399
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=63.87 E-value=1.2e+02 Score=27.96 Aligned_cols=41 Identities=10% Similarity=-0.037 Sum_probs=32.7
Q ss_pred hcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCH
Q 048364 26 CTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSF 66 (400)
Q Consensus 26 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~ 66 (400)
--..+.++...+++..+...|.......+|.....| +.|..
T Consensus 27 ~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~t 68 (696)
T KOG2471|consen 27 QFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCT 68 (696)
T ss_pred ccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccc
Confidence 345678999999999999988877777788888877 77764
No 400
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.85 E-value=4.5 Score=34.72 Aligned_cols=118 Identities=14% Similarity=0.050 Sum_probs=83.2
Q ss_pred HHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHH-HHHHHHHHHHhcCCHHHH
Q 048364 261 CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVI-IWGSFLAACKEHKQFDMA 338 (400)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a 338 (400)
....|.++.|++.|...++ --++....|..-.+++.+.+++..|.+=+... .+.||.. -|-.=-.+-...|++++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 3457889999999988874 33445566777778888999998888877766 6666653 343333455568899999
Q ss_pred HHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 339 ERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
...++...+.+ . +..+-..+-...-+.+..++-...+++..+
T Consensus 202 a~dl~~a~kld-~--dE~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 202 AHDLALACKLD-Y--DEANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHhcc-c--cHHHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 99999999998 4 555555666666666766666665555543
No 401
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=63.85 E-value=93 Score=26.55 Aligned_cols=59 Identities=15% Similarity=0.076 Sum_probs=46.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048364 289 HYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALR 347 (400)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (400)
+++...+.|..+|.+.+|.++.+.. .+.| +...+-.++..+...||--.+...++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3455667888999999999999988 5566 667788889999999997777777766654
No 402
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=63.79 E-value=17 Score=18.12 Aligned_cols=29 Identities=14% Similarity=0.314 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 048364 333 KQFDMAERVIKQALRMVKPENDGGVFTLICD 363 (400)
Q Consensus 333 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 363 (400)
|+.+.|..+|++++... | .+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~-~-~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKF-P-KSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHC-C-CChHHHHHHHH
Confidence 45667777777777766 5 56666655443
No 403
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=63.77 E-value=1.1e+02 Score=27.56 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=15.8
Q ss_pred CCchHHHHHHHHhhcccchHHHHHHHHHH
Q 048364 353 NDGGVFTLICDLYTMNEKWEGAERVRKLM 381 (400)
Q Consensus 353 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 381 (400)
-...++..++-+|.-.+++.+|.+.|...
T Consensus 162 ~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 162 CHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred hheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555544
No 404
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.47 E-value=1.9e+02 Score=30.05 Aligned_cols=19 Identities=26% Similarity=0.146 Sum_probs=12.5
Q ss_pred HHHhcCCHHHHHHHHHhcc
Q 048364 194 MYAKCGFLKYALMVFELME 212 (400)
Q Consensus 194 ~~~~~g~~~~A~~~~~~~~ 212 (400)
+|...|...+|.+.|.+..
T Consensus 929 ~yl~tge~~kAl~cF~~a~ 947 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSAL 947 (1480)
T ss_pred eeecCCchHHHHHHHHHHh
Confidence 4566677777777776554
No 405
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=63.39 E-value=45 Score=26.09 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=10.0
Q ss_pred HHHhcCChHHHHHHHHhc
Q 048364 296 LFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 296 ~~~~~g~~~~a~~~~~~~ 313 (400)
.|.+.|.+++|.+++++.
T Consensus 120 VCm~~g~Fk~A~eiLkr~ 137 (200)
T cd00280 120 VCMENGEFKKAEEVLKRL 137 (200)
T ss_pred HHHhcCchHHHHHHHHHH
Confidence 455555555555555555
No 406
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=63.39 E-value=90 Score=26.23 Aligned_cols=88 Identities=8% Similarity=0.069 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----CchHHHHHHHH
Q 048364 290 YGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN-----DGGVFTLICDL 364 (400)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~ 364 (400)
|..++..|.|.-+...=..+|+..| .|. .++.-|.+.|+.+.|..++--+.....+.. +...-..++..
T Consensus 156 ~l~Ivv~C~RKtE~~~W~~LF~~lg-~P~-----dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~ 229 (258)
T PF07064_consen 156 YLEIVVNCARKTEVRYWPYLFDYLG-SPR-----DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVM 229 (258)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHhcC-CHH-----HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHH
Confidence 3334444444444444445555554 333 366777788888888777777765552322 34445566666
Q ss_pred hhcccchHHHHHHHHHHhc
Q 048364 365 YTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 365 ~~~~g~~~~a~~~~~~m~~ 383 (400)
....|+|+-+.++.+=+..
T Consensus 230 a~~~~~w~Lc~eL~RFL~~ 248 (258)
T PF07064_consen 230 ALESGDWDLCFELVRFLKA 248 (258)
T ss_pred HHhcccHHHHHHHHHHHHH
Confidence 7778888888877665543
No 407
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=63.17 E-value=1.6e+02 Score=28.91 Aligned_cols=121 Identities=8% Similarity=0.012 Sum_probs=80.7
Q ss_pred HHHhcCChhhHHHHHHHhhhhcCCCCChh--hHHHHHHHHHhcCChHHHHHHHHhc--cCCccHHHHHHHHHHHHhcCCH
Q 048364 260 ACVHTGLVDEGRKYFKMIDEEYDLEPRIQ--HYGCMVDLFGKAGFLEEAYEVIRTM--RLEPNVIIWGSFLAACKEHKQF 335 (400)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~ 335 (400)
++.--|+.++|..+.+++... ..|-.. -.-.+..+|+-.|+.....+++.-. +...|+.-+..+.-++.-..++
T Consensus 510 aL~~ygrqe~Ad~lI~el~~d--kdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRD--KDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcC--CchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecCh
Confidence 344567777888888888743 233221 1234566788888877777777665 4445666666666677777888
Q ss_pred HHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 336 DMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 336 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
+....++.-+.+...|.....+-..|..+|.-.|. .+|+.+++-|..
T Consensus 588 ~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 588 EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 88888888777665353445566667777777776 578888888765
No 408
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=63.13 E-value=17 Score=30.89 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=29.5
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHH
Q 048364 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTG 256 (400)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 256 (400)
-|+..|..-.+.||.++|+.++++.++.|+.--..+|-.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 366788888888888888888888888887644445443
No 409
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=63.01 E-value=18 Score=22.65 Aligned_cols=54 Identities=9% Similarity=-0.017 Sum_probs=39.7
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccch
Q 048364 316 EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKW 371 (400)
Q Consensus 316 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 371 (400)
.|....++.++..+++-.-.++++..+.++...| . .+..+|.--++.+++..-+
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~-I~~d~~lK~vR~LaReQF~ 58 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-S-IDLDTFLKQVRSLAREQFL 58 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S-S-HHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHHHHH
Confidence 3556677888888888888889999999999888 4 5777777777777665443
No 410
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=62.45 E-value=97 Score=26.31 Aligned_cols=57 Identities=16% Similarity=0.199 Sum_probs=27.5
Q ss_pred HHHHHHhcCChHHHHHHHHhc-------cCCccHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 293 MVDLFGKAGFLEEAYEVIRTM-------RLEPNVIIWGSF-LAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~-------~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
++..+.+.|.+.+|+.....+ +-+|+..+...+ -.+|....++.++..-+..+....
T Consensus 131 li~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~A 195 (421)
T COG5159 131 LIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLA 195 (421)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHh
Confidence 444555556666665555555 223343332222 234445555555555555555444
No 411
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=62.13 E-value=1.6e+02 Score=28.61 Aligned_cols=186 Identities=13% Similarity=0.108 Sum_probs=94.1
Q ss_pred HhcCCHHHHHHHHHhccC-----CC-------cccHHHHHHHHHhCCChhhHHHHHH--------HHHHCCCCCCHHHHH
Q 048364 196 AKCGFLKYALMVFELMEE-----RN-------VISWTALICGSAHRGYSEDALSLFE--------MMQATGVKPNEMTFT 255 (400)
Q Consensus 196 ~~~g~~~~A~~~~~~~~~-----~~-------~~~~~~l~~~~~~~~~~~~a~~~~~--------~m~~~~~~p~~~~~~ 255 (400)
+-.+++..|...+..+.+ |+ +..+....-.+...|+.+.|...|. .....+...+...+.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 456889889888887764 11 1122223334556799999999997 444444444444443
Q ss_pred HH--HHHHHhcC--Chhh--HHHHHHHhhhhcCCCCC--hhhHHHH-HHHHHhcC---------ChHHHHHHH-HhccCC
Q 048364 256 GV--LTACVHTG--LVDE--GRKYFKMIDEEYDLEPR--IQHYGCM-VDLFGKAG---------FLEEAYEVI-RTMRLE 316 (400)
Q Consensus 256 ~l--~~~~~~~~--~~~~--a~~~~~~~~~~~~~~~~--~~~~~~l-~~~~~~~g---------~~~~a~~~~-~~~~~~ 316 (400)
.+ +..+...+ ..++ +.++++.+.......|+ ..++..+ +.++.... .+.++++.. +..+..
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 32 11222222 2223 77778777643333332 2233333 33332211 122334444 332211
Q ss_pred c-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCCchHHH-----HHHHHhhcccchHHHHHHHHHHh
Q 048364 317 P-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVK--PENDGGVFT-----LICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 317 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
- -..+++.+...+. .|+..+............. |......|. .+...+...|+.++|.....+..
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 1 1123333333343 6777776666655443321 212344443 34444778899999988877654
No 412
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.68 E-value=90 Score=25.69 Aligned_cols=21 Identities=0% Similarity=0.048 Sum_probs=13.9
Q ss_pred HHHHhcCChhhHHHHHHHhhh
Q 048364 259 TACVHTGLVDEGRKYFKMIDE 279 (400)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~ 279 (400)
..-+..+++.+|+.+|+++..
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334556777777887777763
No 413
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=61.15 E-value=57 Score=24.45 Aligned_cols=77 Identities=10% Similarity=0.142 Sum_probs=45.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhCC---------CCChhhHHHHHHHHHhcCC-cchHHHHHHHHHhcCCCCCCHHHHHH
Q 048364 84 WNTMIKGYSKSGNVCEARDFFERMP---------LRNVASWSAMIAAYLNAGA-YDPGLKLFREMISNEGLTPDQMTIGA 153 (400)
Q Consensus 84 ~~~l~~~~~~~~~~~~a~~~~~~~~---------~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~ 153 (400)
.|.++.-....+++...+.+++.+. ..+-..|.+++.+..+..- ---+..+|+-+. +.+.+++..-|..
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk-~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK-KNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH-HcCCCCCHHHHHH
Confidence 3444444444455555555544442 2245667777777755544 334566677776 4667777788888
Q ss_pred HHHHhhcc
Q 048364 154 VLSGCSHL 161 (400)
Q Consensus 154 ll~~~~~~ 161 (400)
++.++.+-
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 88877655
No 414
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=60.88 E-value=58 Score=26.18 Aligned_cols=81 Identities=21% Similarity=0.282 Sum_probs=61.6
Q ss_pred ChHHHHHHHHhcc-----CCc-----cHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHcCCCCCCchHHHHHH
Q 048364 302 FLEEAYEVIRTMR-----LEP-----NVIIWGSFLAACKEHK---------QFDMAERVIKQALRMVKPENDGGVFTLIC 362 (400)
Q Consensus 302 ~~~~a~~~~~~~~-----~~p-----~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 362 (400)
..+.|..++.+|| +-| ...-|..+..+|.+.| +.+.-..+++..++.++++.-+..|..++
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiI 215 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSII 215 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceecc
Confidence 4677888888882 112 3456788888898887 56777888899999998767788898888
Q ss_pred HHhhcccchHHHHHHHHHHh
Q 048364 363 DLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 363 ~~~~~~g~~~~a~~~~~~m~ 382 (400)
+--.-.-+.++..+++..+.
T Consensus 216 Dk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred ccccCCCCHHHHHHHHHHhh
Confidence 77776778888888887664
No 415
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=60.23 E-value=1.1e+02 Score=26.11 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=19.6
Q ss_pred HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcC
Q 048364 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKS 94 (400)
Q Consensus 62 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 94 (400)
...+++.|.++...-...+......+.+.+.+.
T Consensus 8 ~~~df~~a~~ll~~~~~~~l~~L~~i~~~l~~l 40 (292)
T PF13929_consen 8 SKQDFDEANKLLQSNPENSLDPLKSIVSTLSQL 40 (292)
T ss_pred HHhhHHHHHHHHccCCcchhHHHHHHHHHHHhC
Confidence 556677777776555444555566666655543
No 416
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.08 E-value=51 Score=31.33 Aligned_cols=84 Identities=13% Similarity=-0.007 Sum_probs=58.8
Q ss_pred HhcCChHHHHHHHHhc-cCCc-c------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhccc
Q 048364 298 GKAGFLEEAYEVIRTM-RLEP-N------VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNE 369 (400)
Q Consensus 298 ~~~g~~~~a~~~~~~~-~~~p-~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 369 (400)
.+..++..+.+.|..- ..-| | ......+--+|....+.|.|.++++++.+.+ | .++-+-..+..+....|
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~-~~~l~q~~~~~~~~~E~ 442 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-R-QSPLCQLLMLQSFLAED 442 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-c-ccHHHHHHHHHHHHHhc
Confidence 3556677777776643 2111 1 2245666677788888888888888888887 7 67777777777888888
Q ss_pred chHHHHHHHHHHhc
Q 048364 370 KWEGAERVRKLMLN 383 (400)
Q Consensus 370 ~~~~a~~~~~~m~~ 383 (400)
..++|...+.....
T Consensus 443 ~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 443 KSEEALTCLQKIKS 456 (872)
T ss_pred chHHHHHHHHHHHh
Confidence 88888887766654
No 417
>PRK10941 hypothetical protein; Provisional
Probab=60.01 E-value=77 Score=26.80 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=11.9
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHH
Q 048364 116 SAMIAAYLNAGAYDPGLKLFREMI 139 (400)
Q Consensus 116 ~~l~~~~~~~g~~~~a~~~~~~m~ 139 (400)
+.+-.+|.+.++++.|+++.+.+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll 208 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALL 208 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHH
Confidence 334444555555555555555554
No 418
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=60.01 E-value=26 Score=23.37 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=18.9
Q ss_pred CCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCCh
Q 048364 64 TSFGFARKLFDELPERNAVTWNTMIKGYSKSGNV 97 (400)
Q Consensus 64 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 97 (400)
.+.+.+.++++.++.+...+|..+..++-..|..
T Consensus 44 tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~ 77 (84)
T cd08326 44 SRRDQARQLLIDLETRGKQAFPAFLSALRETGQT 77 (84)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCch
Confidence 3455555555555555555555555555555443
No 419
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=59.67 E-value=54 Score=27.29 Aligned_cols=53 Identities=9% Similarity=-0.062 Sum_probs=24.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC----CCCCchHHHHHHHHhhcccchHHHHHH
Q 048364 325 FLAACKEHKQFDMAERVIKQALRMVK----PENDGGVFTLICDLYTMNEKWEGAERV 377 (400)
Q Consensus 325 l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~ 377 (400)
+..-|...|++++|.++|+.+...-- ......+...+..++.+.|+.+....+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34445555555555555555532110 112333444444455555555554443
No 420
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=59.06 E-value=1e+02 Score=25.43 Aligned_cols=133 Identities=11% Similarity=0.157 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHH
Q 048364 113 ASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILV 192 (400)
Q Consensus 113 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 192 (400)
.+..--+..|.+.-++.-|....+++. .+.--..-+--|.+..+..- -.++.+.....++..+..-..+++
T Consensus 131 QAlRRtMEiyS~ttRFalaCN~s~KIi-------EPIQSRCAiLRysklsd~qi--L~Rl~~v~k~Ekv~yt~dgLeaii 201 (333)
T KOG0991|consen 131 QALRRTMEIYSNTTRFALACNQSEKII-------EPIQSRCAILRYSKLSDQQI--LKRLLEVAKAEKVNYTDDGLEAII 201 (333)
T ss_pred HHHHHHHHHHcccchhhhhhcchhhhh-------hhHHhhhHhhhhcccCHHHH--HHHHHHHHHHhCCCCCcchHHHhh
Q ss_pred HHHHhcCCHHHHHHHHHhccC----------------CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHH
Q 048364 193 DMYAKCGFLKYALMVFELMEE----------------RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTG 256 (400)
Q Consensus 193 ~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 256 (400)
+...||...|...++.... |.+.....++..+.+.+ +++|.++++++-+.|..|....-+.
T Consensus 202 --fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~~~-~~~A~~il~~lw~lgysp~Dii~~~ 278 (333)
T KOG0991|consen 202 --FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLKRN-IDEALKILAELWKLGYSPEDIITTL 278 (333)
T ss_pred --hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHhcc-HHHHHHHHHHHHHcCCCHHHHHHHH
Q ss_pred H
Q 048364 257 V 257 (400)
Q Consensus 257 l 257 (400)
.
T Consensus 279 F 279 (333)
T KOG0991|consen 279 F 279 (333)
T ss_pred H
No 421
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=58.86 E-value=68 Score=23.36 Aligned_cols=44 Identities=9% Similarity=0.063 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHH
Q 048364 336 DMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRK 379 (400)
Q Consensus 336 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 379 (400)
++...+|..|.+.++-...+..|...+..+...|++.+|.++++
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34567888888888643556677777778888899999988875
No 422
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=58.52 E-value=57 Score=27.17 Aligned_cols=57 Identities=11% Similarity=0.019 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc-------c-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048364 290 YGCMVDLFGKAGFLEEAYEVIRTM-------R-LEPNVIIWGSFLAACKEHKQFDMAERVIKQAL 346 (400)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~-------~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 346 (400)
...+..-|.+.|++++|.++|+.+ | ..+...+...+..++.+.|+.+....+.=++.
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 345677788899999999999887 1 12344456667777788888888777665553
No 423
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=58.22 E-value=12 Score=27.28 Aligned_cols=34 Identities=24% Similarity=0.439 Sum_probs=25.3
Q ss_pred HHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048364 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261 (400)
Q Consensus 226 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 261 (400)
....|.-.+|..+|++|++.|-+||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34456778899999999999988874 56666543
No 424
>PRK13342 recombination factor protein RarA; Reviewed
Probab=58.22 E-value=1.5e+02 Score=27.06 Aligned_cols=170 Identities=13% Similarity=-0.005 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHh---Cc-ccchhhhhHHHHHHHhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChHHHHHHHhh
Q 048364 31 NLTVIHHLHSHILKL---GF-ISHVYVATSLLHEYVVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFER 106 (400)
Q Consensus 31 ~~~~a~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 106 (400)
..++...+++..... |+ ..+......++... .|+...++.+++..... ..........++......
T Consensus 152 s~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s-~Gd~R~aln~Le~~~~~---------~~~It~~~v~~~~~~~~~ 221 (413)
T PRK13342 152 SEEDIEQLLKRALEDKERGLVELDDEALDALARLA-NGDARRALNLLELAALG---------VDSITLELLEEALQKRAA 221 (413)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC-CCCHHHHHHHHHHHHHc---------cCCCCHHHHHHHHhhhhh
Q ss_pred CCCCChhhHHHHHHHHHhc---CCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccc-----chhhhhhhhhhhHHHh
Q 048364 107 MPLRNVASWSAMIAAYLNA---GAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLG-----SVGLLMGKSAHGFIVK 178 (400)
Q Consensus 107 ~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~-----~~~~~~a~~~~~~~~~ 178 (400)
....+...+..+++++.+. ++.+.|+.++..|. ..|..|....-..+..++-..| .... +...++....
T Consensus 222 ~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l-~~G~d~~~i~rrl~~~a~edig~a~~~~~~~--~~~~~~~~~~ 298 (413)
T PRK13342 222 RYDKDGDEHYDLISALHKSIRGSDPDAALYYLARML-EAGEDPLFIARRLVIIASEDIGLADPNALQV--AVAAADAVER 298 (413)
T ss_pred ccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHhhcccCHHHHHH--HHHHHHHHHH
Q ss_pred ccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC
Q 048364 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEE 213 (400)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 213 (400)
.|.+.........+-.++.+-+...+...++...+
T Consensus 299 ~g~pe~~~~l~~~~~~l~~~pksn~~~~a~~~a~~ 333 (413)
T PRK13342 299 IGMPEGRIALAQAVIYLALAPKSNAAYTAINAALA 333 (413)
T ss_pred hCCcHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
No 425
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=57.84 E-value=1.2e+02 Score=26.01 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhcCCHHHH
Q 048364 320 IIWGSFLAACKEHKQFDMA 338 (400)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~a 338 (400)
.+|.-|+.+++.+|+.+..
T Consensus 322 K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhhHHHHHHhcCChHHHH
Confidence 4677788888888876543
No 426
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=57.63 E-value=92 Score=24.49 Aligned_cols=40 Identities=13% Similarity=0.274 Sum_probs=24.4
Q ss_pred HHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcC
Q 048364 258 LTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301 (400)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 301 (400)
+..|.+.|.+++|.+++++... .|+.......+....+.+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~----d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS----DPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc----CCCchhHHHHHHHHHHcc
Confidence 4467788888888888888774 344444444444444433
No 427
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.30 E-value=2e+02 Score=28.33 Aligned_cols=26 Identities=15% Similarity=0.376 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHH
Q 048364 114 SWSAMIAAYLNAGAYDPGLKLFREMI 139 (400)
Q Consensus 114 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 139 (400)
.-..|+..|...+++.+|++++-..+
T Consensus 507 L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 507 LLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHHHHccChHHHHHHHHhcc
Confidence 34458888999999999999998776
No 428
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=57.23 E-value=1.4e+02 Score=26.28 Aligned_cols=138 Identities=9% Similarity=-0.001 Sum_probs=80.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 048364 189 TILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDAL-SLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267 (400)
Q Consensus 189 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 267 (400)
-.+.+.+++.++.+.+..+-+.+..-......++..++-...-.+... .+.+.+... ||......++++.+.....
T Consensus 170 QGIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~ 246 (340)
T PF12069_consen 170 QGIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPAS 246 (340)
T ss_pred hHHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCch
Confidence 356677888888777777766666645555566666655555444433 344444333 8999999999999887776
Q ss_pred hhHHHHHHHhhhhcCCCCChhhHH-HHHHHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHHH
Q 048364 268 DEGRKYFKMIDEEYDLEPRIQHYG-CMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACK 330 (400)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~ 330 (400)
......++.+..+ ....+..+.. ...+++....+.+.+..+++++-..+|...|+.+..-++
T Consensus 247 ~~~~~~i~~~L~~-~~~~~~e~Li~IAgR~W~~L~d~~~l~~fle~LA~~~~~~lF~qlfaDLv 309 (340)
T PF12069_consen 247 DLVAILIDALLQS-PRLCHPEVLIAIAGRCWQWLKDPQLLRLFLERLAQQDDQALFNQLFADLV 309 (340)
T ss_pred hHHHHHHHHHhcC-cccCChHHHHHHHhcCchhcCCHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 6666656666643 2223333332 223344445566666666666633444555555444333
No 429
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.89 E-value=1.8e+02 Score=27.74 Aligned_cols=146 Identities=12% Similarity=0.009 Sum_probs=78.5
Q ss_pred cchHHHHHHHHHhcCC-CCCCHHHHHHHHHH-hhcccchhhhhhhhhhhHHHh-------ccccchHHHHHHHHHHHHhc
Q 048364 128 YDPGLKLFREMISNEG-LTPDQMTIGAVLSG-CSHLGSVGLLMGKSAHGFIVK-------NEWELNEQIATILVDMYAKC 198 (400)
Q Consensus 128 ~~~a~~~~~~m~~~~~-~~p~~~~~~~ll~~-~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 198 (400)
...|.++++... ..| +.+-...=.....+ .....+.+. +..++..+.+ .+ .+.....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a-~~g~~~a~~~~g~~y~~G~~g~~~d~e~--a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAA-KLGHSEAQYALGICYLAGTYGVTQDLES--AIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHH-hhcchHHHHHHHHHHhhccccccccHHH--HHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 346777777665 322 21111111122223 445567777 7777777666 33 333455666777664
Q ss_pred C-----CHHHHHHHHHhccC-CCcccHHHHHHHHHhC---CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCh
Q 048364 199 G-----FLKYALMVFELMEE-RNVISWTALICGSAHR---GYSEDALSLFEMMQATGVKPNEMTFTGVLTACV--HTGLV 267 (400)
Q Consensus 199 g-----~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~--~~~~~ 267 (400)
. +.+.|..++....+ .++..-..+...+... .+...|.++|......|.. ....+..++.... -..+.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNL 380 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCH
Confidence 3 56778888877665 3333333344433332 3567888888888877743 2222221111111 23467
Q ss_pred hhHHHHHHHhhhh
Q 048364 268 DEGRKYFKMIDEE 280 (400)
Q Consensus 268 ~~a~~~~~~~~~~ 280 (400)
..|..++++..++
T Consensus 381 ~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 381 ELAFAYYKKAAEK 393 (552)
T ss_pred HHHHHHHHHHHHc
Confidence 7788888877754
No 430
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=56.64 E-value=1.3e+02 Score=26.32 Aligned_cols=61 Identities=13% Similarity=0.108 Sum_probs=36.9
Q ss_pred HHHHHhcCCHHHHHHHHHhccC-------CCcccHH--HHHHHHHhCCChhhHHHHHHHHHH-----CCCCCCHH
Q 048364 192 VDMYAKCGFLKYALMVFELMEE-------RNVISWT--ALICGSAHRGYSEDALSLFEMMQA-----TGVKPNEM 252 (400)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~--~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~ 252 (400)
+...-+.++.++|.++++++.+ |+.+.|- .....+...|+..++.+++++..+ .|++|+.+
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 3334455567777777766653 4454443 344556677777777777777766 56666443
No 431
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=56.60 E-value=99 Score=24.52 Aligned_cols=16 Identities=38% Similarity=0.420 Sum_probs=10.3
Q ss_pred cccchHHHHHHHHHHh
Q 048364 367 MNEKWEGAERVRKLML 382 (400)
Q Consensus 367 ~~g~~~~a~~~~~~m~ 382 (400)
+.|+++.|.+.++-|.
T Consensus 133 ~~~~~~~Ae~~~~~ME 148 (204)
T COG2178 133 RKGSFEEAERFLKFME 148 (204)
T ss_pred HhccHHHHHHHHHHHH
Confidence 4566777776666664
No 432
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=56.19 E-value=9.8 Score=34.34 Aligned_cols=103 Identities=15% Similarity=0.089 Sum_probs=69.5
Q ss_pred HHHHHHhcCChhhHHHHHHHhhhhcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHhc-cCCccH-HHHHHHHHHHHhcC
Q 048364 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQ-HYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNV-IIWGSFLAACKEHK 333 (400)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~-~~~~~l~~~~~~~~ 333 (400)
-+......+.++.|..++.++. .+.|+.. .|..-..++.+.+++..|+.=+.+. ...|+. ..|..=..++...+
T Consensus 10 ean~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 3445667788999999999988 4467544 4444457888999999888766655 555643 24444445666777
Q ss_pred CHHHHHHHHHHHHHcCCCCCCchHHHHHHHHh
Q 048364 334 QFDMAERVIKQALRMVKPENDGGVFTLICDLY 365 (400)
Q Consensus 334 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 365 (400)
++.+|...|+...... | .++ -+...+.-|
T Consensus 87 ~~~~A~~~l~~~~~l~-P-nd~-~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLA-P-NDP-DATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhhcC-c-CcH-HHHHHHHHH
Confidence 8888888888888877 6 443 444444333
No 433
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=56.19 E-value=1.3e+02 Score=27.10 Aligned_cols=54 Identities=11% Similarity=0.048 Sum_probs=40.0
Q ss_pred HhcccchhHHHHHHHHHHHHhCcccchh--hhhHHHHHH---HhCCHHHHHHHHhhCCCC
Q 048364 25 SCTHFNNLTVIHHLHSHILKLGFISHVY--VATSLLHEY---VVTSFGFARKLFDELPER 79 (400)
Q Consensus 25 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~---~~g~~~~a~~~~~~~~~~ 79 (400)
.+-+.+++..|.++++.+.+. ++++.. .+..+..+| ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344778999999999999887 554443 556666666 667888999998887654
No 434
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=56.01 E-value=1.5e+02 Score=26.44 Aligned_cols=127 Identities=10% Similarity=0.141 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc----------cCCc--
Q 048364 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM----------RLEP-- 317 (400)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----------~~~p-- 317 (400)
....|..+-..+...-..-.-..+..-+. ..+-.+.++..+...+..+|+.+.|.+++++. .+.+
T Consensus 6 hs~~Y~~~q~~F~~~v~~~Dp~~l~~ll~---~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~ 82 (360)
T PF04910_consen 6 HSKAYQEAQEQFYAAVQSHDPNALINLLQ---KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFR 82 (360)
T ss_pred CCHHHHHHHHHHHHHHHccCHHHHHHHHH---HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q ss_pred ----------------cHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhh-cccchHHHHHH
Q 048364 318 ----------------NVIIWGSF---LAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT-MNEKWEGAERV 377 (400)
Q Consensus 318 ----------------~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~ 377 (400)
|...|.++ +..+.+.|-+..|.++.+-+.+.+ |..|+......+..|+ ++++++--+++
T Consensus 83 ~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLd-p~~DP~g~ll~ID~~ALrs~~y~~Li~~ 161 (360)
T PF04910_consen 83 SNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLD-PDEDPLGVLLFIDYYALRSRQYQWLIDF 161 (360)
T ss_pred cccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CCCCcchhHHHHHHHHHhcCCHHHHHHH
Q ss_pred HHH
Q 048364 378 RKL 380 (400)
Q Consensus 378 ~~~ 380 (400)
.+.
T Consensus 162 ~~~ 164 (360)
T PF04910_consen 162 SES 164 (360)
T ss_pred HHh
No 435
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=55.50 E-value=41 Score=20.04 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=14.2
Q ss_pred HHHHHHhcCChHHHHHHHHhc-cCCccHH
Q 048364 293 MVDLFGKAGFLEEAYEVIRTM-RLEPNVI 320 (400)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~-~~~p~~~ 320 (400)
+.-++.+.|++++|.+..+.+ .+.|+-.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 344555666666666666655 4455433
No 436
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=54.29 E-value=63 Score=21.60 Aligned_cols=62 Identities=10% Similarity=-0.068 Sum_probs=42.8
Q ss_pred CCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCC
Q 048364 14 SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELP 77 (400)
Q Consensus 14 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~ 77 (400)
|+...|..-++....... ++ .++|+.....|+..|+.+|..++..+ .+=-.+...++++.|.
T Consensus 8 ~~~~~~k~~~~rk~~Ls~-eE-~EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 8 PTAQVYKYSLRRKKVLSA-EE-VELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred ChHHHHHHHHHHHhccCH-HH-HHHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 345555555544333322 22 28899999999999999999999988 5556777777777765
No 437
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=54.19 E-value=1.6e+02 Score=26.30 Aligned_cols=197 Identities=11% Similarity=0.056 Sum_probs=113.0
Q ss_pred cCCHHHHHHHHHhccC-----C----CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 048364 198 CGFLKYALMVFELMEE-----R----NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH----T 264 (400)
Q Consensus 198 ~g~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~ 264 (400)
.++.+.|.+-+....+ . +......++..|...++|+.--+...-+.....+ ...+...+++-+.. .
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrgq-lk~ai~~Mvq~~~~y~~~~ 103 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRGQ-LKQAIQSMVQQAMTYIDGT 103 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHhccCC
Confidence 5777777766654443 2 3344566778888889988776666555433222 22333344443332 1
Q ss_pred CChhhHHHHHHHhhh--hcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHhccCCc------cH--HHHHHHHHHHHh
Q 048364 265 GLVDEGRKYFKMIDE--EYDLEP---RIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEP------NV--IIWGSFLAACKE 331 (400)
Q Consensus 265 ~~~~~a~~~~~~~~~--~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p------~~--~~~~~l~~~~~~ 331 (400)
.+.+.-+.+.+.++. ...+-. ....-..|...+-.+|+.++|..++.+..+.. .. ...--=++.|..
T Consensus 104 ~d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~ 183 (439)
T KOG1498|consen 104 PDLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLL 183 (439)
T ss_pred CCchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 122222333332221 101111 11223346667788999999999999883221 11 111122466788
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCc-----hHHHHHHHHhhcccchHHHHHHHHHHhccccccccCcccc
Q 048364 332 HKQFDMAERVIKQALRMVKPENDG-----GVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395 (400)
Q Consensus 332 ~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 395 (400)
.+|+-.|.-+-+++..+.+-.|+. ..|..+++...+.+.|=.+-+.++...+.|--......|+
T Consensus 184 ~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~ 252 (439)
T KOG1498|consen 184 RLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWI 252 (439)
T ss_pred hhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhh
Confidence 889999988888887766432332 4677888888888888888888888877554443333344
No 438
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=53.79 E-value=1.5e+02 Score=25.79 Aligned_cols=69 Identities=20% Similarity=0.243 Sum_probs=49.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhc-cCCccHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHH
Q 048364 291 GCMVDLFGKAGFLEEAYEVIRTM-RLEPNVI---IWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359 (400)
Q Consensus 291 ~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 359 (400)
..|..+-.+.|+..+|.+.|+++ ...|-.. ....++.++....-+.+...++-+.-+...|+.-...|.
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYT 351 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYT 351 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHH
Confidence 34555666899999999999998 4344222 346788999988888888888887777765644444444
No 439
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=53.34 E-value=1.4e+02 Score=25.39 Aligned_cols=154 Identities=9% Similarity=0.023 Sum_probs=93.4
Q ss_pred HHHHHhhcccchhhhhhhhhhhHHHhccccchHH-------HHHHHHHHHHhcCCHHHHHHHHHhccC--------CCcc
Q 048364 153 AVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ-------IATILVDMYAKCGFLKYALMVFELMEE--------RNVI 217 (400)
Q Consensus 153 ~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~ 217 (400)
-+.+-..+.+++++ +...+..+...|...+.. +...+...|...|++..-.+......+ ...-
T Consensus 8 e~a~~~v~~~~~~~--ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~K 85 (421)
T COG5159 8 ELANNAVKSNDIEK--AIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITK 85 (421)
T ss_pred HHHHHhhhhhhHHH--HHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHH
Confidence 45667788889999 999999999888766544 445677888888888776665544332 2333
Q ss_pred cHHHHHHHHHh-CCChhhHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHhcCChhhHHHHHHHhhh---hcCCCCChh
Q 048364 218 SWTALICGSAH-RGYSEDALSLFEMMQATGVKPNEM-----TFTGVLTACVHTGLVDEGRKYFKMIDE---EYDLEPRIQ 288 (400)
Q Consensus 218 ~~~~l~~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~ 288 (400)
...+++.-+-. ...++..+.+.....+...+-... .=..++..+.+.|.+.+|......+.. +..-+|+..
T Consensus 86 iirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li 165 (421)
T COG5159 86 IIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLI 165 (421)
T ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcccee
Confidence 45566655543 344666777776665542221211 123567778899999999887765442 345555544
Q ss_pred hHHHH-HHHHHhcCChHHHHH
Q 048364 289 HYGCM-VDLFGKAGFLEEAYE 308 (400)
Q Consensus 289 ~~~~l-~~~~~~~g~~~~a~~ 308 (400)
+...+ -..|....+..++..
T Consensus 166 ~vhllESKvyh~irnv~Kska 186 (421)
T COG5159 166 TVHLLESKVYHEIRNVSKSKA 186 (421)
T ss_pred ehhhhhHHHHHHHHhhhhhhh
Confidence 43322 224444444444433
No 440
>PHA02875 ankyrin repeat protein; Provisional
Probab=53.31 E-value=1.8e+02 Score=26.42 Aligned_cols=19 Identities=11% Similarity=0.041 Sum_probs=9.2
Q ss_pred HHhcCCHHHHHHHHHhccC
Q 048364 195 YAKCGFLKYALMVFELMEE 213 (400)
Q Consensus 195 ~~~~g~~~~A~~~~~~~~~ 213 (400)
.+..|+.+-+.-+++.-..
T Consensus 175 A~~~g~~eiv~~Ll~~ga~ 193 (413)
T PHA02875 175 AMAKGDIAICKMLLDSGAN 193 (413)
T ss_pred HHHcCCHHHHHHHHhCCCC
Confidence 3345555555555544333
No 441
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.14 E-value=58 Score=22.46 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=19.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHH
Q 048364 325 FLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360 (400)
Q Consensus 325 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 360 (400)
|.-.|.+.|+.+.|.+-|+.=.... | .+.+|..
T Consensus 78 LGlLys~~G~~e~a~~eFetEKalF-P--ES~~fmD 110 (121)
T COG4259 78 LGLLYSNSGKDEQAVREFETEKALF-P--ESGVFMD 110 (121)
T ss_pred HHHHHhhcCChHHHHHHHHHhhhhC-c--cchhHHH
Confidence 4445667777777777777666665 4 4444443
No 442
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=52.23 E-value=48 Score=22.13 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=36.8
Q ss_pred HhhHHHHhCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHh
Q 048364 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKL 45 (400)
Q Consensus 2 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 45 (400)
++|+.-+..|+..|+..|..+++.+.-.=-++...++++.|...
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 57888888999999999999999887777788888888887654
No 443
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=52.21 E-value=1.4e+02 Score=25.06 Aligned_cols=26 Identities=19% Similarity=0.086 Sum_probs=17.4
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHHH
Q 048364 19 ILHILKSCTHFNNLTVIHHLHSHILK 44 (400)
Q Consensus 19 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 44 (400)
.+.+++.+.+.|....|..+.+.+..
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~~ 110 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYRS 110 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhcc
Confidence 46677777777777777777666543
No 444
>PRK09462 fur ferric uptake regulator; Provisional
Probab=51.85 E-value=64 Score=24.25 Aligned_cols=61 Identities=10% Similarity=0.100 Sum_probs=36.3
Q ss_pred hHHHHhCCCCCCchhHHHHHHHhcc-cchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCC
Q 048364 4 FSQMHRQSVPSDSFSILHILKSCTH-FNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTS 65 (400)
Q Consensus 4 ~~~m~~~g~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~ 65 (400)
-+.+++.|++++..-.. ++..+.. .+..-.|.++++.+.+.++..+..|.=..+..+ ..|-
T Consensus 5 ~~~l~~~glr~T~qR~~-Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 5 NTALKKAGLKVTLPRLK-ILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 34567778776655443 4444444 346778899999988887665554433333444 4443
No 445
>PRK12798 chemotaxis protein; Reviewed
Probab=51.41 E-value=1.9e+02 Score=26.21 Aligned_cols=189 Identities=14% Similarity=0.111 Sum_probs=115.3
Q ss_pred hcCCHHHHHHHHHhccC----CCcccHHHHHHH-HHhCCChhhHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCh
Q 048364 197 KCGFLKYALMVFELMEE----RNVISWTALICG-SAHRGYSEDALSLFEMMQATGVKPNE----MTFTGVLTACVHTGLV 267 (400)
Q Consensus 197 ~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~ 267 (400)
-.|+.++|.+.+..+.. +....|-.|+.+ .....++..|+++|+...-. .|.. ....--+-...+.|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcH
Confidence 46899999999988875 344567677655 44567899999999987653 3432 2333344456778888
Q ss_pred hhHHHHHHHhhhhcCCCCChhh-HHHHHHHHHhcC---ChHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048364 268 DEGRKYFKMIDEEYDLEPRIQH-YGCMVDLFGKAG---FLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIK 343 (400)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g---~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 343 (400)
+++..+-..-..++...|=..- +..+...+.+.+ ..+....++..|.-.--...|-.+.+.-.-.|+.+-|.-.-+
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8877666555544433342222 222333343333 345556666666322234588888899999999999998888
Q ss_pred HHHHcCCCCCCc-hHHHHHHH--HhhcccchHHHHHHHHHHhcccccc
Q 048364 344 QALRMVKPENDG-GVFTLICD--LYTMNEKWEGAERVRKLMLNQNVRK 388 (400)
Q Consensus 344 ~~~~~~~~~~~~-~~~~~l~~--~~~~~g~~~~a~~~~~~m~~~~~~~ 388 (400)
+....... .+. ..-..|-. +-.-..+++++.+.+..+....+.+
T Consensus 282 ~A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~ 328 (421)
T PRK12798 282 RALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDRDKLSE 328 (421)
T ss_pred HHHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCCh
Confidence 88887622 221 11111111 2234456888888777776655543
No 446
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.36 E-value=1.9e+02 Score=26.13 Aligned_cols=63 Identities=8% Similarity=-0.109 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhcccchhhhhhhhhhhHHHhcc--ccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC
Q 048364 149 MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE--WELNEQIATILVDMYAKCGFLKYALMVFELMEE 213 (400)
Q Consensus 149 ~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 213 (400)
..+.-+..-|...|+++. |.+.+..+++.- .......+-.+|..-.-.|+|........+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~--Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDN--ALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHH--HHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 356677778888888888 888887754432 122334455555555566777776666555543
No 447
>PF13934 ELYS: Nuclear pore complex assembly
Probab=51.35 E-value=1.4e+02 Score=24.56 Aligned_cols=105 Identities=19% Similarity=0.225 Sum_probs=51.9
Q ss_pred HHHHHHHHH--hCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHH
Q 048364 219 WTALICGSA--HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296 (400)
Q Consensus 219 ~~~l~~~~~--~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 296 (400)
|..++.++. ..+++++|.+.+-+ ..+.|+. -..++.++...|+.+.|..+++.... ...+......++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~---ps~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSH---PSLIPWF--PDKILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCC---CCCCccc--HHHHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH
Confidence 444455543 34556666665521 1122221 12366666667777777777766541 11122222222333
Q ss_pred HHhcCChHHHHHHHHhccCCccHHHHHHHHHHHHhc
Q 048364 297 FGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEH 332 (400)
Q Consensus 297 ~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~ 332 (400)
..++.+.+|..+-+...-.-....+..++..+...
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~ 185 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEE 185 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHH
Confidence 55677777777766652111233555556555543
No 448
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=50.03 E-value=1.7e+02 Score=25.32 Aligned_cols=30 Identities=13% Similarity=0.071 Sum_probs=13.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048364 318 NVIIWGSFLAACKEHKQFDMAERVIKQALR 347 (400)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (400)
+...-..++.+.+...+.+...++++....
T Consensus 200 ~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 200 SPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp THHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred CHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 344444444444444444444444444444
No 449
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=49.75 E-value=1.1e+02 Score=22.99 Aligned_cols=44 Identities=16% Similarity=0.058 Sum_probs=19.8
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048364 222 LICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG 265 (400)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 265 (400)
++..+...+++-.|.++++++.+.+...+..|.-..+..+...|
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34444444444445555555555444444444333444444433
No 450
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=49.01 E-value=1.2e+02 Score=23.49 Aligned_cols=42 Identities=12% Similarity=0.091 Sum_probs=18.8
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048364 224 CGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG 265 (400)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 265 (400)
..+...++.-.|.++++.+.+.+..++..|..-.+..+.+.|
T Consensus 33 ~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 33 RLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 333333344445555555555544444444444444444444
No 451
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=48.64 E-value=53 Score=19.02 Aligned_cols=32 Identities=19% Similarity=0.372 Sum_probs=18.6
Q ss_pred HhCCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 048364 227 AHRGYSEDALSLFEMMQATGVKPNEMTFTGVL 258 (400)
Q Consensus 227 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 258 (400)
.+.|-.+++...+++|.+.|+..+...|..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34555556666666666666655555555444
No 452
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=48.08 E-value=1.4e+02 Score=23.74 Aligned_cols=95 Identities=15% Similarity=0.128 Sum_probs=53.9
Q ss_pred HhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhh--------
Q 048364 209 ELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE-------- 280 (400)
Q Consensus 209 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------- 280 (400)
++.++.....|..+..+-++.-+.+++.+.+-- ..=-+++-.|.+..++.++.++++.+.+-
T Consensus 100 kd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LG----------RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LK 169 (233)
T PF14669_consen 100 KDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLG----------RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLK 169 (233)
T ss_pred hcccccCCCCHHHHHHHHhcCCccchhhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 333344555666666666666555554433210 11123455666777777777777766531
Q ss_pred -----cCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc
Q 048364 281 -----YDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 281 -----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
.+..+.-...|.....+.+.|..+.|..++++-
T Consensus 170 GL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 170 GLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred CccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 011233445566667777777777777777765
No 453
>PRK09857 putative transposase; Provisional
Probab=47.40 E-value=1.8e+02 Score=24.96 Aligned_cols=63 Identities=13% Similarity=0.097 Sum_probs=38.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcccccc
Q 048364 324 SFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRK 388 (400)
Q Consensus 324 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 388 (400)
.++.-....++.++..++++...+.. | ........++.-+...|.-+++.++.++|...|+.+
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~-~-~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERS-P-KHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhC-c-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 33433345566666666666665554 5 344455566666666676677777777777776653
No 454
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=47.26 E-value=65 Score=20.23 Aligned_cols=49 Identities=14% Similarity=-0.006 Sum_probs=28.2
Q ss_pred CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048364 214 RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263 (400)
Q Consensus 214 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 263 (400)
+....++.++..+++..-.++++..+.+....|. .+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4445556666666666666677777777766664 345555555555443
No 455
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=47.20 E-value=1.3e+02 Score=29.00 Aligned_cols=78 Identities=12% Similarity=0.006 Sum_probs=42.2
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhhH--HHHHHHhhhhcCCCCChhhHHHHHHH
Q 048364 221 ALICGSAHRGYSEDALSLFEMMQAT--GVKPNEMTFTGVLTACVHTGLVDEG--RKYFKMIDEEYDLEPRIQHYGCMVDL 296 (400)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~~~a--~~~~~~~~~~~~~~~~~~~~~~l~~~ 296 (400)
.+..+|...|++..+..+++..... |-+.=...||..++...+.|.++-. ..-..+..+...+.-|..||..++++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 5667777777777777777776653 2222334566667777777765421 11111222222344556666666554
Q ss_pred HH
Q 048364 297 FG 298 (400)
Q Consensus 297 ~~ 298 (400)
-.
T Consensus 113 sl 114 (1117)
T COG5108 113 SL 114 (1117)
T ss_pred hc
Confidence 33
No 456
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=46.48 E-value=1e+02 Score=21.73 Aligned_cols=27 Identities=7% Similarity=0.081 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048364 321 IWGSFLAACKEHKQFDMAERVIKQALR 347 (400)
Q Consensus 321 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (400)
-|..++..|...|..++|.+++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477788888888888888888888877
No 457
>PHA02875 ankyrin repeat protein; Provisional
Probab=46.47 E-value=2.3e+02 Score=25.71 Aligned_cols=76 Identities=11% Similarity=0.165 Sum_probs=37.3
Q ss_pred cccchhHHHHHHHHHHHHhCcccchhh--hhHHHHHH-HhCCHHHHHHHHhhCCCCChh--hHHHHHHHHHcCCChHHHH
Q 048364 27 THFNNLTVIHHLHSHILKLGFISHVYV--ATSLLHEY-VVTSFGFARKLFDELPERNAV--TWNTMIKGYSKSGNVCEAR 101 (400)
Q Consensus 27 ~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~ 101 (400)
++.|+.+. ++.+++.|..|+... ..+.+... ..|+.+-+.-+++.-..++.. ...+.+...+..|+.+.+.
T Consensus 10 ~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~ 85 (413)
T PHA02875 10 ILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVE 85 (413)
T ss_pred HHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHH
Confidence 34455544 344445676655432 22333333 677777666666554333211 1122344445566666666
Q ss_pred HHHhh
Q 048364 102 DFFER 106 (400)
Q Consensus 102 ~~~~~ 106 (400)
.+++.
T Consensus 86 ~Ll~~ 90 (413)
T PHA02875 86 ELLDL 90 (413)
T ss_pred HHHHc
Confidence 65554
No 458
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=46.34 E-value=1.2e+02 Score=27.68 Aligned_cols=55 Identities=18% Similarity=0.312 Sum_probs=35.8
Q ss_pred HHHHHHHHcCCChHHHHHHHhhCCCC---ChhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 048364 85 NTMIKGYSKSGNVCEARDFFERMPLR---NVASWSAMIAAYLNAGAYDPGLKLFREMI 139 (400)
Q Consensus 85 ~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 139 (400)
..|+.-|...|++.+|.+..+++.-| ....+-+++.+.-+.|+-...+.++++.-
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf 570 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECF 570 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 45666666777777777777766544 34566666666666666666666666665
No 459
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=46.24 E-value=64 Score=23.75 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=22.0
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 316 EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 316 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
.+|.+....++ =+...|+++.|..+.+-+++.+.+
T Consensus 46 ~qd~Vl~~~mv-W~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 46 AQDDVLMTVMV-WLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred CcCchHHhhHh-hhhcccCHHHHHHHHHHHHHcCCC
Confidence 34443333333 345778888888888888888753
No 460
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=46.23 E-value=1.1e+02 Score=22.22 Aligned_cols=60 Identities=13% Similarity=0.181 Sum_probs=39.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHH-HHHHHHHHhcCCHHHHHHHHHHH
Q 048364 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIW-GSFLAACKEHKQFDMAERVIKQA 345 (400)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~ 345 (400)
-..+..++..++.-.|..+.|.++++..+..++-... ..++..|....+.++..++-++.
T Consensus 65 kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 65 KLSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3455666777777788888888888877444444433 34677777777777766665554
No 461
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=46.10 E-value=1.5e+02 Score=24.73 Aligned_cols=54 Identities=7% Similarity=-0.053 Sum_probs=25.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHH
Q 048364 326 LAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLM 381 (400)
Q Consensus 326 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 381 (400)
-.++...|++-++++...+++... | .+..+|..-+.+....=+..+|..=|...
T Consensus 237 ~QC~L~~~e~yevleh~seiL~~~-~-~nvKA~frRakAhaa~Wn~~eA~~D~~~v 290 (329)
T KOG0545|consen 237 CQCLLKKEEYYEVLEHCSEILRHH-P-GNVKAYFRRAKAHAAVWNEAEAKADLQKV 290 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhcC-C-chHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 344444455555555555555554 4 44445544444444443444444433333
No 462
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.02 E-value=2e+02 Score=26.80 Aligned_cols=94 Identities=6% Similarity=-0.006 Sum_probs=55.3
Q ss_pred hHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHh
Q 048364 234 DALSLFEMM-QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312 (400)
Q Consensus 234 ~a~~~~~~m-~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 312 (400)
+....++.. ...|+..+......++. ...|++..|..+++++... + ....++..+...
T Consensus 184 ~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~-~--~~~it~~~V~~~---------------- 242 (484)
T PRK14956 184 VLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVF-T--DSKLTGVKIRKM---------------- 242 (484)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHh-C--CCCcCHHHHHHH----------------
Confidence 344444444 33566666666655554 3458888888888776521 1 111222222111
Q ss_pred ccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 313 MRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 313 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
+|. ++...+..++.+....+....|..+++++.+.|
T Consensus 243 lg~-~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G 278 (484)
T PRK14956 243 IGY-HGIEFLTSFIKSLIDPDNHSKSLEILESLYQEG 278 (484)
T ss_pred hCC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcC
Confidence 132 355566667777766666678999999999988
No 463
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=45.94 E-value=1.8e+02 Score=24.46 Aligned_cols=82 Identities=17% Similarity=0.262 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048364 184 NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263 (400)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 263 (400)
++.....+...|.+.|++.+|+..|-.-.+++...+..++......|...++ +...-..++ -|.-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL~ 153 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYLC 153 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHHH
Confidence 6777888899999999999998887554433333332222222222222222 222222233 3455
Q ss_pred cCChhhHHHHHHHhhhh
Q 048364 264 TGLVDEGRKYFKMIDEE 280 (400)
Q Consensus 264 ~~~~~~a~~~~~~~~~~ 280 (400)
.++...|...++...++
T Consensus 154 l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 154 LGNLRDANELFDTFTSK 170 (260)
T ss_dssp TTBHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 67788887777665543
No 464
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=45.60 E-value=50 Score=21.79 Aligned_cols=16 Identities=6% Similarity=0.088 Sum_probs=7.7
Q ss_pred HhCCHHHHHHHHhhCC
Q 048364 62 VVTSFGFARKLFDELP 77 (400)
Q Consensus 62 ~~g~~~~a~~~~~~~~ 77 (400)
..|+.+-+..+++.-.
T Consensus 35 ~~~~~~~~~~Ll~~g~ 50 (89)
T PF12796_consen 35 ENGNLEIVKLLLENGA 50 (89)
T ss_dssp HTTTHHHHHHHHHTTT
T ss_pred HcCCHHHHHHHHHhcc
Confidence 4555555555544433
No 465
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=45.53 E-value=2.4e+02 Score=25.74 Aligned_cols=233 Identities=10% Similarity=-0.036 Sum_probs=133.5
Q ss_pred HHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHHH-hCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChHHHH
Q 048364 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYV-VTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEAR 101 (400)
Q Consensus 23 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 101 (400)
++++...| +.+.+.+....... ++...+.....++. ..+......+.+.+..++.........++.+.+..+-..
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~ 120 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEP 120 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHH
Confidence 56666666 45666666655433 23333333333343 333333566666776777778888888888888877777
Q ss_pred HHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccc
Q 048364 102 DFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181 (400)
Q Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (400)
.+..-+..++.......+.++...+ ..+...+.... + .+|...-..-+.++...+..+. ... +..+ -.
T Consensus 121 ~L~~~L~~~~p~vR~aal~al~~r~--~~~~~~L~~~L-~---d~d~~Vra~A~raLG~l~~~~a--~~~-L~~a---l~ 188 (410)
T TIGR02270 121 WLEPLLAASEPPGRAIGLAALGAHR--HDPGPALEAAL-T---HEDALVRAAALRALGELPRRLS--EST-LRLY---LR 188 (410)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhc--cChHHHHHHHh-c---CCCHHHHHHHHHHHHhhccccc--hHH-HHHH---Hc
Confidence 7777676667666666666666544 23445555555 2 5566666666666666665443 222 2222 22
Q ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHh-ccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048364 182 ELNEQIATILVDMYAKCGFLKYALMVFEL-MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260 (400)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 260 (400)
..+..+-..-+.+....|. ..|...+.. ..+++......+...+...| .+++...+..+.+. + .+-...+.+
T Consensus 189 d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~-~~~a~~~L~~ll~d---~--~vr~~a~~A 261 (410)
T TIGR02270 189 DSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAG-GPDAQAWLRELLQA---A--ATRREALRA 261 (410)
T ss_pred CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCC-chhHHHHHHHHhcC---h--hhHHHHHHH
Confidence 3455566666666777777 556655554 44455555444444444433 33566666665543 1 245566667
Q ss_pred HHhcCChhhHHHHHHHhh
Q 048364 261 CVHTGLVDEGRKYFKMID 278 (400)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~ 278 (400)
+.+.|+...+.-+.+.+.
T Consensus 262 lG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 262 VGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred HHHcCCcchHHHHHHHhc
Confidence 777777766655555553
No 466
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=44.33 E-value=87 Score=22.16 Aligned_cols=47 Identities=17% Similarity=0.118 Sum_probs=33.2
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 048364 222 LICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268 (400)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 268 (400)
++..+...+..-.|.++++++.+.+..++..|..-.+..+.+.|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 45555556666778888888888776677777777777777776543
No 467
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=43.98 E-value=2.5e+02 Score=25.42 Aligned_cols=24 Identities=4% Similarity=0.141 Sum_probs=11.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc
Q 048364 290 YGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
.|.|++.|...+.++.|.++..+.
T Consensus 212 iN~LLr~yL~n~lydqa~~lvsK~ 235 (493)
T KOG2581|consen 212 INLLLRNYLHNKLYDQADKLVSKS 235 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhcc
Confidence 344444444445555555544444
No 468
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=43.46 E-value=3.9e+02 Score=27.56 Aligned_cols=254 Identities=9% Similarity=-0.049 Sum_probs=114.9
Q ss_pred HHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccc
Q 048364 102 DFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEW 181 (400)
Q Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (400)
.+.+.+..+|...-...+..+.+.+. +.+...+.... . .+|...-...+.++.+.+.... ....+....+.
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL-~---D~d~~VR~~Aa~aL~~l~~~~~--~~~~L~~~L~~-- 695 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAAL-G---DGAAAVRRAAAEGLRELVEVLP--PAPALRDHLGS-- 695 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHH-c---CCCHHHHHHHHHHHHHHHhccC--chHHHHHHhcC--
Confidence 44444456666666666666666554 33444444444 2 2333333333333333322111 11112122221
Q ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048364 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261 (400)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 261 (400)
++..+-...+.++...+..+ ...+...+..+|...-...+.++.+.+..+. +.... -.++...-...+.++
T Consensus 696 -~d~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL 766 (897)
T PRK13800 696 -PDPVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGL 766 (897)
T ss_pred -CCHHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHH
Confidence 34444444455544432211 2233444455666555556666665544322 11121 234555555556666
Q ss_pred HhcCChhh-HHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHH
Q 048364 262 VHTGLVDE-GRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAER 340 (400)
Q Consensus 262 ~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 340 (400)
...+..+. +...+..+.+ .++...-...+.++...|..+.+...+..+-..++..+-...+.++...+. +++..
T Consensus 767 ~~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~ 841 (897)
T PRK13800 767 ATLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVP 841 (897)
T ss_pred HHhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHH
Confidence 65554432 2333444432 245556666667777776654443333333113444444455566665554 33444
Q ss_pred HHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 341 VIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
.+-.+.+. ++..+-...+.++.+.+.-..+...+....
T Consensus 842 ~L~~~L~D----~~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 842 ALVEALTD----PHLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHHHHhcC----CCHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 44444421 345555555666655422334455554444
No 469
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=42.95 E-value=3.1e+02 Score=26.33 Aligned_cols=99 Identities=10% Similarity=0.028 Sum_probs=58.6
Q ss_pred cchhhhhHHHHHHHhCCHHHHHHHHhhCCCCC-hhhHHHHHHHHHcCCChHHHHHHHhhCCCCC---hhhHHHHHHHHHh
Q 048364 49 SHVYVATSLLHEYVVTSFGFARKLFDELPERN-AVTWNTMIKGYSKSGNVCEARDFFERMPLRN---VASWSAMIAAYLN 124 (400)
Q Consensus 49 ~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~ 124 (400)
+....+..++..++.-+.+.-.++++++.. . ...+..++++....|......-+.+.+.... ...-..+..+..-
T Consensus 308 ~~~~~f~~lv~~lR~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~ 386 (574)
T smart00638 308 PAAAKFLRLVRLLRTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHT 386 (574)
T ss_pred chHHHHHHHHHHHHhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 345567777777777777778888877765 4 5678888888888888777666666665432 2222223332222
Q ss_pred c-CCcchHHHHHHHHHhcCCCCCCH
Q 048364 125 A-GAYDPGLKLFREMISNEGLTPDQ 148 (400)
Q Consensus 125 ~-g~~~~a~~~~~~m~~~~~~~p~~ 148 (400)
. .--.+.++.+.++.+...+.+..
T Consensus 387 ~~~Pt~~~l~~l~~l~~~~~~~~~~ 411 (574)
T smart00638 387 ARYPTEEILKALFELAESPEVQKQP 411 (574)
T ss_pred hhcCCHHHHHHHHHHhcCccccccH
Confidence 2 22344555555555344455544
No 470
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.14 E-value=1.7e+02 Score=28.09 Aligned_cols=85 Identities=11% Similarity=0.069 Sum_probs=58.5
Q ss_pred HHhcCChhhHHHHHHHhhhhcCCCCC------hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhc
Q 048364 261 CVHTGLVDEGRKYFKMIDEEYDLEPR------IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEH 332 (400)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 332 (400)
..+..++..+.+.|..-.+ .++.| ...+..+.-+|.+..+.|+|.+++++. .++| +..+--.+..+....
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~--~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E 441 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLK--DIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAE 441 (872)
T ss_pred HHHHHHHHHHHHHHHHHHH--hccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence 3456778888888876664 22222 234566777888889999999999999 5555 344445556677788
Q ss_pred CCHHHHHHHHHHHHH
Q 048364 333 KQFDMAERVIKQALR 347 (400)
Q Consensus 333 ~~~~~a~~~~~~~~~ 347 (400)
|..++|.........
T Consensus 442 ~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 442 DKSEEALTCLQKIKS 456 (872)
T ss_pred cchHHHHHHHHHHHh
Confidence 888888887766554
No 471
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=41.95 E-value=64 Score=21.83 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=15.4
Q ss_pred CHHHHHHHHhhCCCCChhhHHHHHHHHHc
Q 048364 65 SFGFARKLFDELPERNAVTWNTMIKGYSK 93 (400)
Q Consensus 65 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 93 (400)
+.+.+.++++.++.+.+.+|..+..++-.
T Consensus 49 ~~~k~~~Lld~L~~RG~~AF~~F~~aL~~ 77 (90)
T cd08332 49 SFSQNVALLNLLPKRGPRAFSAFCEALRE 77 (90)
T ss_pred cHHHHHHHHHHHHHhChhHHHHHHHHHHh
Confidence 44555555555555555555555555543
No 472
>PF15469 Sec5: Exocyst complex component Sec5
Probab=41.30 E-value=1.7e+02 Score=22.86 Aligned_cols=28 Identities=14% Similarity=0.031 Sum_probs=18.7
Q ss_pred cchHHHHHHHHHHhccccccccCccccc
Q 048364 369 EKWEGAERVRKLMLNQNVRKARGSSVIS 396 (400)
Q Consensus 369 g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 396 (400)
...++..+++..+.+.+..++|.+.|+.
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~~~l~ 180 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIWYWLE 180 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 3455566666667777777777777765
No 473
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.24 E-value=1.9e+02 Score=27.46 Aligned_cols=100 Identities=10% Similarity=0.021 Sum_probs=0.0
Q ss_pred HHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH--HhCCHHHHHHHHhhCCC-------CChhhHHHHHHHHHc
Q 048364 23 LKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY--VVTSFGFARKLFDELPE-------RNAVTWNTMIKGYSK 93 (400)
Q Consensus 23 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~g~~~~a~~~~~~~~~-------~~~~~~~~l~~~~~~ 93 (400)
|..+.+.|-+..|.++-+.+.+..+.-|+.....+|..| ++.++.-.+++++.... ||-.--.++...|.+
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Q ss_pred CCC---hHHHHHHHhhCCCCChhhHHHHHHHH
Q 048364 94 SGN---VCEARDFFERMPLRNVASWSAMIAAY 122 (400)
Q Consensus 94 ~~~---~~~a~~~~~~~~~~~~~~~~~l~~~~ 122 (400)
... -+.|...+.+....-+...+-|+..+
T Consensus 429 ~~~~~~rqsa~~~l~qAl~~~P~vl~eLld~~ 460 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQALKHHPLVLSELLDEL 460 (665)
T ss_pred cCChhhHHHHHHHHHHHHHhCcHHHHHHHHhc
No 474
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.10 E-value=41 Score=29.24 Aligned_cols=120 Identities=12% Similarity=0.082 Sum_probs=79.1
Q ss_pred HHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCCh-hhHHHHHHHHHhcCChH
Q 048364 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRI-QHYGCMVDLFGKAGFLE 304 (400)
Q Consensus 226 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~ 304 (400)
....|.++.|++.|...+... +|....|..-.+++.+.+++..|++=++... .+.||. .-|-.-..+-...|+++
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~---ein~Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAI---EINPDSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhh---ccCcccccccchhhHHHHHhhchH
Confidence 456788899999998887763 4456667777778888999999988887777 345543 34444445556688999
Q ss_pred HHHHHHHhc-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 305 EAYEVIRTM-RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 305 ~a~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
+|...|... .+.-|..+-..+=...-+.+..++-...+++..+..
T Consensus 200 ~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~e~ 245 (377)
T KOG1308|consen 200 EAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERAREER 245 (377)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHHHHh
Confidence 998888877 323333333333344555566666666666666554
No 475
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=40.71 E-value=1.6e+02 Score=28.40 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=23.8
Q ss_pred HHHHHH-HhCCHHHHHHHHhhCCCC------ChhhHHHHHHHHHcCCCh
Q 048364 56 SLLHEY-VVTSFGFARKLFDELPER------NAVTWNTMIKGYSKSGNV 97 (400)
Q Consensus 56 ~l~~~~-~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~ 97 (400)
+++.+| ..|++-.+.++++..... =...||..|+...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 556666 666666666666655432 123455556666666553
No 476
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=40.71 E-value=3.6e+02 Score=26.32 Aligned_cols=85 Identities=11% Similarity=0.113 Sum_probs=39.0
Q ss_pred HHHHHhcCCHHHHHHHHHhcc--CCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh---cC
Q 048364 192 VDMYAKCGFLKYALMVFELME--ERNVISWTALICGSAHRGYSEDALSLFEMMQATG-VKPNEMTFTGVLTACVH---TG 265 (400)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~---~~ 265 (400)
...+.-+|+++.|.+.+-... ..+.+.+-..+..|.-.+-.+... ..+.... -.|...-+..+|..|.+ ..
T Consensus 265 f~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~t 341 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEIT 341 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTTT
T ss_pred HHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhcc
Confidence 344567899999999987722 234444433333322211111111 2222211 11222567788888876 46
Q ss_pred ChhhHHHHHHHhhh
Q 048364 266 LVDEGRKYFKMIDE 279 (400)
Q Consensus 266 ~~~~a~~~~~~~~~ 279 (400)
+..+|.+++-.+..
T Consensus 342 d~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 342 DPREALQYLYLICL 355 (613)
T ss_dssp -HHHHHHHHHGGGG
T ss_pred CHHHHHHHHHHHHH
Confidence 78889998888773
No 477
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=40.70 E-value=1.2e+02 Score=28.01 Aligned_cols=104 Identities=14% Similarity=0.100 Sum_probs=72.5
Q ss_pred HHHHhcCCHHHHHHHHHhccC---C---------CcccHHHHHHHHHhCCChhhHHHHHHHHHH-------CCCCCCH--
Q 048364 193 DMYAKCGFLKYALMVFELMEE---R---------NVISWTALICGSAHRGYSEDALSLFEMMQA-------TGVKPNE-- 251 (400)
Q Consensus 193 ~~~~~~g~~~~A~~~~~~~~~---~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-------~~~~p~~-- 251 (400)
..+.-.|++.+|.+++....- + ....||.|...+.+.|.+..+..+|.+..+ .|.+|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 345567899999998865532 1 234567777777788888877777776653 4544421
Q ss_pred ---------HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHh
Q 048364 252 ---------MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299 (400)
Q Consensus 252 ---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 299 (400)
.+||.=+ .+...|++-.|.+.|....+ -+..++..|-.+..+|..
T Consensus 328 tls~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~--vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVH--VFHRNPRLWLRLAECCIM 381 (696)
T ss_pred ehhcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHH
Confidence 2444333 46788999999999999886 456677889889888864
No 478
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=40.22 E-value=2.9e+02 Score=25.29 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=27.0
Q ss_pred cCCccHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 314 RLEPNVI--IWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 314 ~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
++.|... +....+..+.+.+++..|..+.+++++.+ |
T Consensus 293 ~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~-p 331 (422)
T PF06957_consen 293 KLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELN-P 331 (422)
T ss_dssp ---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT---
T ss_pred CCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcC-C
Confidence 5666543 56777788889999999999999999998 6
No 479
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=39.93 E-value=84 Score=22.49 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=29.3
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 048364 221 ALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267 (400)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 267 (400)
.++..+...+.+-.|.++++.+.+.+...+..|.--.+..+.+.|-.
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 34555555555677777888887777666766666666666666543
No 480
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=39.87 E-value=1.5e+02 Score=21.64 Aligned_cols=43 Identities=9% Similarity=0.300 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHH
Q 048364 234 DALSLFEMMQATGVKPN-EMTFTGVLTACVHTGLVDEGRKYFKM 276 (400)
Q Consensus 234 ~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 276 (400)
++.++|..|...|+--. +.-|..-...+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666666554332 34455555556666666666666653
No 481
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=39.17 E-value=2.6e+02 Score=24.25 Aligned_cols=91 Identities=7% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhc----------CChHH
Q 048364 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA----------GFLEE 305 (400)
Q Consensus 236 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~ 305 (400)
.++|+.|...++.|.-..+.-+.-.+.+.=.+.+.+.+|+.+.. |..-|..|+..||.. |++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s------D~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS------DPQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc------ChhhhHHHHHHHHHHHHHHHHHHHhcchHH
Q ss_pred HHHHHHhccCCccHHHHHHHHHHHHhcC
Q 048364 306 AYEVIRTMRLEPNVIIWGSFLAACKEHK 333 (400)
Q Consensus 306 a~~~~~~~~~~p~~~~~~~l~~~~~~~~ 333 (400)
..++++.-. ..|....-.+...+....
T Consensus 337 nmkLLQ~yp-~tdi~~~l~~A~~Lr~~k 363 (370)
T KOG4567|consen 337 NMKLLQNYP-TTDISKMLAVADSLRDKK 363 (370)
T ss_pred HHHHHhcCC-CCCHHHHHHHHHHHHhcc
No 482
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=39.09 E-value=1.6e+02 Score=21.90 Aligned_cols=71 Identities=14% Similarity=0.061 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHHHhcC---ChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc
Q 048364 248 KPNEMTFTGVLTACVHTG---LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN 318 (400)
Q Consensus 248 ~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~ 318 (400)
.++..+--.+..++.+.. +..+.+.+++.+.++....-.......|.-++.+.++++++.++++.+ ..+||
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 456666666666766654 455667788888752111122334445666788889999998888877 44554
No 483
>PRK12798 chemotaxis protein; Reviewed
Probab=39.02 E-value=3e+02 Score=25.00 Aligned_cols=184 Identities=13% Similarity=0.041 Sum_probs=115.0
Q ss_pred HhcCCHHHHHHHHHhccCCCcccHHHHHHHHH--hCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCChhhHHH
Q 048364 196 AKCGFLKYALMVFELMEERNVISWTALICGSA--HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC-VHTGLVDEGRK 272 (400)
Q Consensus 196 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~ 272 (400)
...|+.+-...++..-..++ .-+.++.+.. -.|+.+++.+.+..+.....++....|..|+.+- ....+...|..
T Consensus 92 lSGGnP~vlr~L~~~d~~~~--~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~ 169 (421)
T PRK12798 92 LSGGNPATLRKLLARDKLGN--FDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALK 169 (421)
T ss_pred hcCCCHHHHHHHHHcCCCCh--hhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHH
Confidence 35566666666555444332 2233443332 3689999999999887777777777888888774 45678999999
Q ss_pred HHHHhhhhcCCCCChhh----HHHHHHHHHhcCChHHHHHHHH----hccCCccHH-HHHHHHHHHHhcCCHHHHHHHHH
Q 048364 273 YFKMIDEEYDLEPRIQH----YGCMVDLFGKAGFLEEAYEVIR----TMRLEPNVI-IWGSFLAACKEHKQFDMAERVIK 343 (400)
Q Consensus 273 ~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~a~~~~~----~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~ 343 (400)
+|+..+- ..|.+-. ...-+......|+.+++..+-. +....|=.. .+..+..+..+.++-..- ..+.
T Consensus 170 ~lD~aRL---laPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~ 245 (421)
T PRK12798 170 LLDQARL---LAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLV 245 (421)
T ss_pred HHHHHHH---hCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHH
Confidence 9998872 3454322 3333445678899888655444 443333222 233344455555433332 3355
Q ss_pred HHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhccc
Q 048364 344 QALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 344 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 385 (400)
.+++.-.+......|..+.+.-.-.|+.+-|.-.-++.....
T Consensus 246 ~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 246 EILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 555543254567789999999999999998887777766543
No 484
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=38.93 E-value=94 Score=20.87 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=16.6
Q ss_pred CCHHHHHHHHhhCCCCChhhHHHHHHHHHcCC
Q 048364 64 TSFGFARKLFDELPERNAVTWNTMIKGYSKSG 95 (400)
Q Consensus 64 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 95 (400)
.+.++|..+++.++.+...+|..+.+++...|
T Consensus 42 t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~ 73 (86)
T cd08323 42 TQKEKAVMLINMILTKDNHAYVSFYNALLHEG 73 (86)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34555555555555555555555555554443
No 485
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=38.41 E-value=1.9e+02 Score=22.44 Aligned_cols=50 Identities=10% Similarity=-0.064 Sum_probs=27.1
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccch
Q 048364 114 SWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV 164 (400)
Q Consensus 114 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~ 164 (400)
.-..++..+...++.-.|.++++.+. +.+..++..|....|..+.+.|-+
T Consensus 27 qR~~IL~~l~~~~~hlSa~eI~~~L~-~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 27 QRLEVLRLMSLQPGAISAYDLLDLLR-EAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHH-hhCCCCCcchHHHHHHHHHHCCCE
Confidence 33344455555555666666666666 445455555555555555555543
No 486
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.15 E-value=1.4e+02 Score=20.76 Aligned_cols=32 Identities=22% Similarity=0.227 Sum_probs=16.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHhc-cCCccHHHH
Q 048364 291 GCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIW 322 (400)
Q Consensus 291 ~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~ 322 (400)
..|.-.|.+.|+.+.|.+-|+.- ..-|...+|
T Consensus 76 AhLGlLys~~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 76 AHLGLLYSNSGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred HHHHHHHhhcCChHHHHHHHHHhhhhCccchhH
Confidence 33455556666666666555544 333444433
No 487
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=37.84 E-value=1.3e+02 Score=21.02 Aligned_cols=21 Identities=19% Similarity=0.618 Sum_probs=10.1
Q ss_pred HHHHHHhcCCcchHHHHHHHH
Q 048364 118 MIAAYLNAGAYDPGLKLFREM 138 (400)
Q Consensus 118 l~~~~~~~g~~~~a~~~~~~m 138 (400)
++.-|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 334444555555555555554
No 488
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=37.49 E-value=2.6e+02 Score=23.91 Aligned_cols=114 Identities=7% Similarity=0.023 Sum_probs=71.9
Q ss_pred CHHHHHHHHHhccC-----CCcccHHHHHHHHHhC-C-ChhhHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChhhHH
Q 048364 200 FLKYALMVFELMEE-----RNVISWTALICGSAHR-G-YSEDALSLFEMMQA-TGVKPNEMTFTGVLTACVHTGLVDEGR 271 (400)
Q Consensus 200 ~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~ 271 (400)
...+|.++|+.... .|...-..+++..... + ....-.++.+-+.. .|..++..+...++..+++.+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566666663221 2444455555555441 1 22222333333332 245667777888888888888888888
Q ss_pred HHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc
Q 048364 272 KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
++++......+...|...|..+|+.....|+..-..++.++-
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 888877644345567778888888888888888888877765
No 489
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=36.92 E-value=1.3e+02 Score=25.29 Aligned_cols=57 Identities=19% Similarity=0.134 Sum_probs=41.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 325 FLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 325 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
+=..+.+.++++.|....++.+..+ | .++.-..--+.+|.+.|.+..|++-+....+
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~-P-~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLN-P-EDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhC-C-CChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 3345677778888888888888877 7 6776677777777777777777776665443
No 490
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.89 E-value=3.1e+02 Score=24.45 Aligned_cols=56 Identities=7% Similarity=0.016 Sum_probs=33.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhh----cccchHHHHHHHHHHhccc
Q 048364 329 CKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT----MNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 329 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~m~~~~ 385 (400)
+.+-++..-+...+..+..+++ ..-..+|..|-.-+. ..+..++|.+..-+|.+.|
T Consensus 287 F~kDnnt~l~k~av~sl~k~nI-~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 287 FTKDNNTGLAKQAVSSLYKKNI-QRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HhhcCcHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 3455667777777777776663 244556666554443 3355666666666666543
No 491
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=36.81 E-value=1.3e+02 Score=26.45 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=10.9
Q ss_pred HHHHHH-HhCCHHHHHHHHhhC
Q 048364 56 SLLHEY-VVTSFGFARKLFDEL 76 (400)
Q Consensus 56 ~l~~~~-~~g~~~~a~~~~~~~ 76 (400)
.++..| +.|.+++|.++....
T Consensus 111 ~Lm~~ci~~g~y~eALel~~~~ 132 (338)
T PF04124_consen 111 QLMDTCIRNGNYSEALELSAHV 132 (338)
T ss_pred HHHHHHHhcccHhhHHHHHHHH
Confidence 445555 555555555554443
No 492
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=36.79 E-value=61 Score=17.41 Aligned_cols=22 Identities=9% Similarity=0.052 Sum_probs=15.1
Q ss_pred HHHHHHHhhcccchHHHHHHHH
Q 048364 358 FTLICDLYTMNEKWEGAERVRK 379 (400)
Q Consensus 358 ~~~l~~~~~~~g~~~~a~~~~~ 379 (400)
+..+.-.+-..|++++|++++.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 4556666778888888888843
No 493
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=36.66 E-value=5e+02 Score=26.83 Aligned_cols=256 Identities=13% Similarity=0.029 Sum_probs=136.9
Q ss_pred HHHhhCCCCChhhHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHH
Q 048364 71 KLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMT 150 (400)
Q Consensus 71 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 150 (400)
.+.+.+..+|..+-...+..+.+.+..+....+...+..+|...-...+.++.+.+........+..+. . .+|...
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L-~---~~d~~V 700 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHL-G---SPDPVV 700 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHh-c---CCCHHH
Confidence 444445566777777777777776664433444444555555555555555555433222233333443 2 145544
Q ss_pred HHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCC
Q 048364 151 IGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRG 230 (400)
Q Consensus 151 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 230 (400)
-...+.++...+..+ ...+... . -.++..+-...+.++.+.+..+ .+.....+++...-...+.++...+
T Consensus 701 R~~A~~aL~~~~~~~---~~~l~~~-L---~D~d~~VR~~Av~aL~~~~~~~---~l~~~l~D~~~~VR~~aa~aL~~~~ 770 (897)
T PRK13800 701 RAAALDVLRALRAGD---AALFAAA-L---GDPDHRVRIEAVRALVSVDDVE---SVAGAATDENREVRIAVAKGLATLG 770 (897)
T ss_pred HHHHHHHHHhhccCC---HHHHHHH-h---cCCCHHHHHHHHHHHhcccCcH---HHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 444555554433211 1111111 1 1345555555566665554432 2334445566666666777777766
Q ss_pred Chhh-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 048364 231 YSED-ALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEV 309 (400)
Q Consensus 231 ~~~~-a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 309 (400)
..+. +...+..+.. .++...-...+.++...|..+.+...+..+.+ .++..+-...+.++.+.+.. ++...
T Consensus 771 ~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~~-~a~~~ 842 (897)
T PRK13800 771 AGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAAD-VAVPA 842 (897)
T ss_pred cccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhcccc-chHHH
Confidence 5443 3444444443 34667777778888888776555444544443 24555555667777777653 44454
Q ss_pred HHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048364 310 IRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348 (400)
Q Consensus 310 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (400)
+..+=-.|+...-...+.++.+.+....+...+..+.+.
T Consensus 843 L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D 881 (897)
T PRK13800 843 LVEALTDPHLDVRKAAVLALTRWPGDPAARDALTTALTD 881 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhC
Confidence 444422566666666677776654345566666666653
No 494
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.30 E-value=4.9e+02 Score=26.61 Aligned_cols=113 Identities=12% Similarity=0.097 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccCCC--c-----ccHHHHHHHHHhCCCh--hhHHHHHHHHHHCCCCCCHHHHH-
Q 048364 186 QIATILVDMYAKCGFLKYALMVFELMEERN--V-----ISWTALICGSAHRGYS--EDALSLFEMMQATGVKPNEMTFT- 255 (400)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-----~~~~~l~~~~~~~~~~--~~a~~~~~~m~~~~~~p~~~~~~- 255 (400)
.-|..|+..|...|+.++|.+++.+..+.+ . ..+-..+..+.+.+.. +-+++.-+-..+....-....+.
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 357789999999999999999998887622 1 1233344444444433 33333333222221100000011
Q ss_pred -----------HHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHh
Q 048364 256 -----------GVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK 299 (400)
Q Consensus 256 -----------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 299 (400)
..+-.+......+-+..+++.+... .-.++....+.++..|++
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~-~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISD-NRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHh-ccccchHHHHHHHHHHHH
Confidence 1122355667778888889888854 334566667777777764
No 495
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=35.93 E-value=1.6e+02 Score=28.25 Aligned_cols=27 Identities=15% Similarity=0.288 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHhhCC
Q 048364 81 AVTWNTMIKGYSKSGNVCEARDFFERMP 108 (400)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 108 (400)
+.-|+ .+..+.-.|.++.|.++++...
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~s 175 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLHS 175 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TTT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhcc
Confidence 33444 6777777788888888874443
No 496
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=34.74 E-value=3e+02 Score=23.77 Aligned_cols=29 Identities=7% Similarity=0.001 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHhh
Q 048364 250 NEMTFTGVLTACVHTGLVDEGRKYFKMID 278 (400)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (400)
+......++.+++...+.+...++++.+.
T Consensus 200 ~~~~k~~~l~aLa~~~d~~~~~~~l~~~l 228 (324)
T PF11838_consen 200 SPEEKRRLLSALACSPDPELLKRLLDLLL 228 (324)
T ss_dssp THHHHHHHHHHHTT-S-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhhccCCHHHHHHHHHHHc
Confidence 34444445555555555555555555555
No 497
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=34.67 E-value=3.1e+02 Score=23.93 Aligned_cols=120 Identities=11% Similarity=0.014 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHh---cCChHHHHHH
Q 048364 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK---AGFLEEAYEV 309 (400)
Q Consensus 233 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~ 309 (400)
+.-+.++++..+.+. -+.......+..+.+..+.+...+-++.+.. ..+-+...|...+..... .-.+++...+
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~--~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLF--KNPGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCCCChHHHHHHHHHHHHHhccCcHHHHHHH
Q ss_pred HHhc-----cCCccH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc
Q 048364 310 IRTM-----RLEPNV---------------IIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG 355 (400)
Q Consensus 310 ~~~~-----~~~p~~---------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 355 (400)
|.+. +..-.. ..+..+...+.+.|-.+.|..+++-+++.+...|..
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~ 190 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPES 190 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccc
No 498
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=34.60 E-value=5.4e+02 Score=27.35 Aligned_cols=153 Identities=12% Similarity=0.022 Sum_probs=93.8
Q ss_pred HHHhCCChhhHHH------HHHH-HHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhh----hcCCC--CChhhHH
Q 048364 225 GSAHRGYSEDALS------LFEM-MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE----EYDLE--PRIQHYG 291 (400)
Q Consensus 225 ~~~~~~~~~~a~~------~~~~-m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~--~~~~~~~ 291 (400)
.....|.+.++.+ ++.. |... -++....|..+...+-+.++.++|...-....- ..|.. -+...|.
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~-h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVL-HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhc-chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 3444556665655 4442 2222 233456778888888889999888775543321 01222 2344566
Q ss_pred HHHHHHHhcCChHHHHHHHHhc---------cCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------CCCCc
Q 048364 292 CMVDLFGKAGFLEEAYEVIRTM---------RLEPNVI-IWGSFLAACKEHKQFDMAERVIKQALRMVK------PENDG 355 (400)
Q Consensus 292 ~l~~~~~~~g~~~~a~~~~~~~---------~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~ 355 (400)
.+.......++...|...+.+. ...|... +++.+-..+...++++.|.++++.+.+... +-...
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~ 1099 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETA 1099 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhh
Confidence 6666666777777777766654 2345443 445555555566889999999988887442 11355
Q ss_pred hHHHHHHHHhhcccchHHHHHHH
Q 048364 356 GVFTLICDLYTMNEKWEGAERVR 378 (400)
Q Consensus 356 ~~~~~l~~~~~~~g~~~~a~~~~ 378 (400)
..+..+.+.+...|++..|....
T Consensus 1100 ~~~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1100 LSYHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHH
Confidence 67788888888888887766543
No 499
>PF08195 TRI9: TRI9 protein; InterPro: IPR013265 This entry contains putative genes, of 129 bp, from the Trichothecene gene cluster of Fusarium sporotrichioides and Gibberella zeae (Fusarium graminearum) that encode a predicted protein of 43 amino acids whose function is unknown [, ].
Probab=34.26 E-value=15 Score=19.55 Aligned_cols=14 Identities=7% Similarity=-0.033 Sum_probs=11.1
Q ss_pred cccccccCcccccc
Q 048364 384 QNVRKARGSSVISS 397 (400)
Q Consensus 384 ~~~~~~~~~~~~~~ 397 (400)
.++..+|+.||+++
T Consensus 9 d~~~~dp~vswle~ 22 (43)
T PF08195_consen 9 DSYDMDPDVSWLEV 22 (43)
T ss_pred ccccCCCCccHHHh
Confidence 46778899999875
No 500
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=34.03 E-value=1.2e+02 Score=18.82 Aligned_cols=49 Identities=18% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHhcCChHHHHHHHHhc---cCCccHHHHHHHHHHHH-----hcCCHHHHHHHH
Q 048364 294 VDLFGKAGFLEEAYEVIRTM---RLEPNVIIWGSFLAACK-----EHKQFDMAERVI 342 (400)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~---~~~p~~~~~~~l~~~~~-----~~~~~~~a~~~~ 342 (400)
...+...|++-+|-++++++ .-.|....+..+|.... +.|+...|.+++
T Consensus 6 ~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 6 GIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Done!