Query 048364
Match_columns 400
No_of_seqs 540 out of 1908
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 15:18:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048364.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048364hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 9.3E-36 3.2E-40 280.4 31.3 362 14-384 82-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2E-35 6.9E-40 278.1 32.7 348 26-384 63-504 (597)
3 4g26_A Pentatricopeptide repea 100.0 6.1E-31 2.1E-35 238.5 20.6 184 113-300 27-223 (501)
4 1w3b_A UDP-N-acetylglucosamine 100.0 5.1E-28 1.8E-32 215.4 37.3 350 22-383 5-367 (388)
5 4g26_A Pentatricopeptide repea 100.0 1E-30 3.4E-35 237.1 18.7 212 131-369 9-224 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 4.6E-27 1.6E-31 209.2 35.5 355 3-370 21-388 (388)
7 2gw1_A Mitochondrial precursor 99.9 2.7E-25 9.3E-30 205.1 27.6 357 17-384 7-478 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 2.3E-23 8E-28 189.0 31.5 318 50-380 25-405 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 4.8E-23 1.6E-27 186.9 31.9 350 13-373 23-443 (450)
10 2gw1_A Mitochondrial precursor 99.9 2.9E-23 9.8E-28 191.6 30.3 348 2-361 27-489 (514)
11 3fp2_A TPR repeat-containing p 99.9 1.2E-22 4E-27 188.6 30.2 357 16-385 25-492 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 2.3E-20 8E-25 163.7 30.6 268 83-383 39-334 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 1.7E-20 5.9E-25 164.5 29.5 259 82-384 4-301 (359)
14 3fp2_A TPR repeat-containing p 99.9 2.7E-20 9.2E-25 172.7 29.3 345 2-357 46-498 (537)
15 3hym_B Cell division cycle pro 99.9 1.6E-19 5.6E-24 156.5 28.1 184 185-371 125-321 (330)
16 3hym_B Cell division cycle pro 99.8 9.8E-19 3.4E-23 151.5 26.9 264 111-384 21-299 (330)
17 1fch_A Peroxisomal targeting s 99.8 2.2E-19 7.6E-24 158.2 22.9 280 94-382 38-357 (368)
18 2xm6_A Protein corresponding t 99.8 2.7E-17 9.3E-22 150.6 37.5 349 15-386 38-434 (490)
19 3mkr_A Coatomer subunit epsilo 99.8 4.5E-18 1.5E-22 144.3 28.1 268 62-378 11-288 (291)
20 1b89_A Protein (clathrin heavy 99.8 6.8E-20 2.3E-24 159.1 15.9 283 62-378 15-305 (449)
21 4eqf_A PEX5-related protein; a 99.8 6.4E-19 2.2E-23 155.2 21.0 260 113-380 66-352 (365)
22 4g1t_A Interferon-induced prot 99.8 1.2E-17 4E-22 152.4 27.0 364 13-395 48-470 (472)
23 2ooe_A Cleavage stimulation fa 99.8 3.8E-16 1.3E-20 144.5 35.5 361 13-383 10-491 (530)
24 1fch_A Peroxisomal targeting s 99.8 2.6E-18 8.9E-23 151.4 20.1 278 94-384 14-314 (368)
25 4eqf_A PEX5-related protein; a 99.8 8.3E-19 2.8E-23 154.5 16.2 258 80-344 64-352 (365)
26 1b89_A Protein (clathrin heavy 99.8 5.7E-18 2E-22 147.1 20.9 277 28-340 15-303 (449)
27 3cv0_A Peroxisome targeting si 99.8 6.7E-18 2.3E-22 146.1 21.2 259 116-383 25-314 (327)
28 2xm6_A Protein corresponding t 99.8 3.9E-16 1.3E-20 142.9 33.8 345 15-381 74-468 (490)
29 3mkr_A Coatomer subunit epsilo 99.8 3.2E-17 1.1E-21 139.0 22.6 243 121-383 8-263 (291)
30 3cv0_A Peroxisome targeting si 99.8 7.7E-17 2.6E-21 139.4 20.8 255 62-346 33-313 (327)
31 3spa_A Mtrpol, DNA-directed RN 99.8 6.7E-19 2.3E-23 165.0 7.4 148 217-369 128-286 (1134)
32 2ooe_A Cleavage stimulation fa 99.7 8E-15 2.7E-19 135.6 33.4 339 39-385 2-455 (530)
33 3spa_A Mtrpol, DNA-directed RN 99.7 1.1E-18 3.8E-23 163.6 7.0 161 181-346 123-308 (1134)
34 1xi4_A Clathrin heavy chain; a 99.7 9.3E-15 3.2E-19 141.7 32.7 325 15-379 984-1340(1630)
35 2pl2_A Hypothetical conserved 99.7 5.4E-16 1.8E-20 125.7 19.6 197 182-383 2-213 (217)
36 1xi4_A Clathrin heavy chain; a 99.7 2.6E-14 8.8E-19 138.6 33.7 313 21-377 1054-1377(1630)
37 3uq3_A Heat shock protein STI1 99.7 1.4E-15 4.8E-20 126.7 20.8 219 113-384 6-236 (258)
38 3uq3_A Heat shock protein STI1 99.7 1.4E-15 4.7E-20 126.7 19.7 229 81-349 5-237 (258)
39 3e4b_A ALGK; tetratricopeptide 99.7 6.1E-15 2.1E-19 133.2 24.4 343 21-386 8-389 (452)
40 1xnf_A Lipoprotein NLPI; TPR, 99.7 4.3E-15 1.5E-19 125.0 20.3 240 126-378 19-269 (275)
41 3u4t_A TPR repeat-containing p 99.7 8.8E-15 3E-19 123.0 20.4 244 83-367 5-267 (272)
42 2ho1_A Type 4 fimbrial biogene 99.7 1.8E-14 6E-19 119.7 20.9 196 185-384 37-238 (252)
43 2vq2_A PILW, putative fimbrial 99.6 5.4E-14 1.8E-18 114.4 21.7 197 184-383 7-210 (225)
44 2q7f_A YRRB protein; TPR, prot 99.6 8E-15 2.7E-19 121.0 16.6 191 188-383 26-221 (243)
45 3sf4_A G-protein-signaling mod 99.6 1.1E-14 3.8E-19 129.7 18.7 268 82-383 10-335 (406)
46 2h6f_A Protein farnesyltransfe 99.6 3.5E-14 1.2E-18 124.5 21.2 228 111-383 96-347 (382)
47 1ouv_A Conserved hypothetical 99.6 2E-13 6.9E-18 114.8 25.0 222 111-349 5-252 (273)
48 2q7f_A YRRB protein; TPR, prot 99.6 2.6E-14 8.8E-19 117.9 19.1 209 150-366 25-238 (243)
49 4a1s_A PINS, partner of inscut 99.6 5.3E-15 1.8E-19 132.3 15.9 267 84-383 51-371 (411)
50 3u4t_A TPR repeat-containing p 99.6 6.5E-14 2.2E-18 117.6 21.7 233 53-325 5-261 (272)
51 2ho1_A Type 4 fimbrial biogene 99.6 1.4E-13 4.7E-18 114.3 23.3 204 112-358 37-246 (252)
52 2h6f_A Protein farnesyltransfe 99.6 4E-14 1.4E-18 124.1 19.9 244 80-367 96-365 (382)
53 3e4b_A ALGK; tetratricopeptide 99.6 5.5E-14 1.9E-18 126.9 21.5 312 57-386 9-353 (452)
54 3ro2_A PINS homolog, G-protein 99.6 1.2E-14 4.3E-19 125.7 16.4 200 185-384 83-332 (338)
55 3sf4_A G-protein-signaling mod 99.6 9.2E-14 3.1E-18 123.8 22.1 93 14-106 7-112 (406)
56 2pl2_A Hypothetical conserved 99.6 3.5E-14 1.2E-18 115.0 17.5 110 199-312 98-210 (217)
57 1ouv_A Conserved hypothetical 99.6 5.2E-13 1.8E-17 112.3 25.4 223 147-386 5-253 (273)
58 4g1t_A Interferon-induced prot 99.6 9.4E-13 3.2E-17 119.9 28.8 292 50-351 50-403 (472)
59 2vq2_A PILW, putative fimbrial 99.6 4.1E-13 1.4E-17 109.1 22.7 206 111-359 7-220 (225)
60 1xnf_A Lipoprotein NLPI; TPR, 99.6 4.2E-14 1.4E-18 118.9 16.0 148 25-177 14-171 (275)
61 3ulq_A Response regulator aspa 99.6 3.3E-13 1.1E-17 119.4 21.4 290 27-348 23-368 (383)
62 4a1s_A PINS, partner of inscut 99.6 4.7E-14 1.6E-18 126.0 15.9 265 52-349 49-373 (411)
63 3vtx_A MAMA; tetratricopeptide 99.6 3.1E-13 1.1E-17 106.3 18.7 163 216-383 5-169 (184)
64 4abn_A Tetratricopeptide repea 99.5 6.4E-14 2.2E-18 127.3 14.6 193 183-381 100-318 (474)
65 3ro2_A PINS homolog, G-protein 99.5 8.5E-13 2.9E-17 114.1 20.5 274 18-349 7-333 (338)
66 3ulq_A Response regulator aspa 99.5 3E-13 1E-17 119.7 17.9 197 185-384 143-368 (383)
67 3vtx_A MAMA; tetratricopeptide 99.5 8.9E-13 3E-17 103.7 18.0 164 184-351 4-172 (184)
68 2ond_A Cleavage stimulation fa 99.5 2.2E-11 7.6E-16 104.2 25.8 163 185-351 99-272 (308)
69 3nf1_A KLC 1, kinesin light ch 99.5 1.3E-13 4.3E-18 118.1 11.0 238 111-383 26-306 (311)
70 3q15_A PSP28, response regulat 99.5 2E-11 6.7E-16 107.8 24.6 127 253-382 224-363 (378)
71 3as5_A MAMA; tetratricopeptide 99.5 2.7E-12 9.3E-17 100.7 16.3 129 251-383 42-172 (186)
72 4gyw_A UDP-N-acetylglucosamine 99.5 2.3E-12 8E-17 121.8 17.5 162 217-383 10-173 (723)
73 3q15_A PSP28, response regulat 99.4 1.1E-11 3.8E-16 109.4 20.0 304 12-349 6-366 (378)
74 1hz4_A MALT regulatory protein 99.4 1.3E-10 4.3E-15 102.4 26.6 52 88-139 21-80 (373)
75 3nf1_A KLC 1, kinesin light ch 99.4 6.3E-13 2.2E-17 113.8 10.6 237 80-349 26-308 (311)
76 2ond_A Cleavage stimulation fa 99.4 4.4E-11 1.5E-15 102.3 22.0 197 184-384 49-270 (308)
77 3as5_A MAMA; tetratricopeptide 99.4 2.4E-11 8.3E-16 95.2 18.2 163 185-351 8-175 (186)
78 4i17_A Hypothetical protein; T 99.4 3.6E-11 1.2E-15 98.0 19.7 143 186-331 8-165 (228)
79 4abn_A Tetratricopeptide repea 99.4 8.4E-12 2.9E-16 113.3 16.2 188 150-343 104-316 (474)
80 1hz4_A MALT regulatory protein 99.4 1.4E-10 4.9E-15 102.0 23.3 260 58-349 21-323 (373)
81 4e6h_A MRNA 3'-END-processing 99.4 2.1E-09 7.3E-14 100.6 31.6 134 4-139 55-221 (679)
82 4i17_A Hypothetical protein; T 99.4 2.7E-11 9.4E-16 98.7 16.8 166 215-384 6-209 (228)
83 4gyw_A UDP-N-acetylglucosamine 99.3 4.3E-11 1.5E-15 113.2 17.4 163 184-349 8-175 (723)
84 3edt_B KLC 2, kinesin light ch 99.3 4.3E-11 1.5E-15 100.6 15.8 221 159-383 12-280 (283)
85 3edt_B KLC 2, kinesin light ch 99.3 5.4E-11 1.8E-15 100.1 14.4 224 123-348 12-281 (283)
86 3mv2_B Coatomer subunit epsilo 99.3 7.9E-10 2.7E-14 92.2 19.6 244 88-358 20-290 (310)
87 3mv2_B Coatomer subunit epsilo 99.3 1.3E-08 4.6E-13 84.8 26.5 173 204-383 85-281 (310)
88 1qqe_A Vesicular transport pro 99.3 8.5E-10 2.9E-14 93.5 19.6 208 65-319 32-273 (292)
89 3qky_A Outer membrane assembly 99.2 3.7E-10 1.3E-14 94.1 17.1 186 184-373 14-250 (261)
90 1qqe_A Vesicular transport pro 99.2 5.8E-10 2E-14 94.5 18.2 210 96-349 32-270 (292)
91 4e6h_A MRNA 3'-END-processing 99.2 6.9E-08 2.4E-12 90.5 32.4 349 32-386 48-535 (679)
92 2fo7_A Synthetic consensus TPR 99.2 6.4E-10 2.2E-14 81.9 15.1 126 254-383 4-131 (136)
93 3qky_A Outer membrane assembly 99.2 1.5E-09 5.1E-14 90.4 16.6 169 214-384 13-224 (261)
94 2fo7_A Synthetic consensus TPR 99.2 2.2E-09 7.4E-14 79.0 15.5 130 218-351 3-134 (136)
95 2pzi_A Probable serine/threoni 99.1 2.4E-10 8.3E-15 108.5 12.5 180 196-381 402-602 (681)
96 2yhc_A BAMD, UPF0169 lipoprote 99.1 2.7E-09 9.1E-14 86.6 16.9 182 184-385 3-214 (225)
97 4ga2_A E3 SUMO-protein ligase 99.1 1.1E-10 3.6E-15 88.3 7.8 142 223-370 4-149 (150)
98 3urz_A Uncharacterized protein 99.1 2.5E-09 8.6E-14 85.6 15.3 166 190-361 9-196 (208)
99 3qou_A Protein YBBN; thioredox 99.1 5E-09 1.7E-13 88.4 16.7 172 205-382 106-282 (287)
100 3rjv_A Putative SEL1 repeat pr 99.1 9.5E-09 3.3E-13 82.5 17.2 161 215-386 17-199 (212)
101 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.3E-08 4.5E-13 82.5 17.3 181 147-351 3-215 (225)
102 2vsy_A XCC0866; transferase, g 99.0 4.3E-09 1.5E-13 98.1 16.0 160 198-362 2-169 (568)
103 2r5s_A Uncharacterized protein 99.0 4.3E-09 1.5E-13 81.8 13.6 76 306-382 93-171 (176)
104 2r5s_A Uncharacterized protein 99.0 2.5E-09 8.5E-14 83.2 12.0 158 186-347 7-172 (176)
105 2qfc_A PLCR protein; TPR, HTH, 99.0 4.3E-08 1.5E-12 83.0 20.1 161 187-347 77-265 (293)
106 2vsy_A XCC0866; transferase, g 99.0 7.1E-09 2.4E-13 96.6 16.5 146 162-313 3-154 (568)
107 3urz_A Uncharacterized protein 99.0 5.3E-09 1.8E-13 83.7 13.0 158 221-385 9-187 (208)
108 3u3w_A Transcriptional activat 99.0 1.3E-07 4.3E-12 80.1 22.0 93 290-382 158-264 (293)
109 3rjv_A Putative SEL1 repeat pr 99.0 5.8E-08 2E-12 77.8 18.6 171 169-349 5-198 (212)
110 2ifu_A Gamma-SNAP; membrane fu 99.0 7.4E-09 2.5E-13 88.4 14.1 220 124-376 3-253 (307)
111 3qou_A Protein YBBN; thioredox 99.0 9E-09 3.1E-13 86.8 14.0 163 181-347 113-283 (287)
112 2qfc_A PLCR protein; TPR, HTH, 99.0 3.3E-08 1.1E-12 83.7 17.2 166 218-383 77-265 (293)
113 4ga2_A E3 SUMO-protein ligase 99.0 3.1E-09 1.1E-13 80.2 9.4 140 192-334 4-149 (150)
114 2pzi_A Probable serine/threoni 99.0 3.4E-08 1.2E-12 93.8 18.4 169 159-334 402-583 (681)
115 1hh8_A P67PHOX, NCF-2, neutrop 99.0 5.7E-08 2E-12 77.8 17.1 91 188-279 9-99 (213)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.9 4E-08 1.4E-12 78.8 15.6 120 257-383 12-149 (213)
117 3u3w_A Transcriptional activat 98.9 1.5E-07 5E-12 79.7 19.6 203 132-346 31-264 (293)
118 1a17_A Serine/threonine protei 98.9 5.2E-08 1.8E-12 74.5 14.7 128 252-383 14-145 (166)
119 3gyz_A Chaperone protein IPGC; 98.9 1.2E-08 4.1E-13 76.7 10.6 95 287-383 36-132 (151)
120 4gco_A Protein STI-1; structur 98.9 3.7E-08 1.3E-12 71.6 13.0 109 252-364 14-124 (126)
121 2ifu_A Gamma-SNAP; membrane fu 98.9 4.8E-08 1.6E-12 83.3 15.6 187 150-340 38-253 (307)
122 1na0_A Designed protein CTPR3; 98.8 8.2E-08 2.8E-12 69.3 13.1 114 251-368 9-124 (125)
123 4gco_A Protein STI-1; structur 98.8 3.7E-08 1.3E-12 71.7 10.9 100 283-384 8-110 (126)
124 3dra_A Protein farnesyltransfe 98.8 2.1E-06 7.3E-11 72.2 22.9 158 199-361 124-299 (306)
125 2lni_A Stress-induced-phosphop 98.8 9.7E-08 3.3E-12 69.9 13.1 116 250-369 15-132 (133)
126 2vyi_A SGTA protein; chaperone 98.8 9.1E-08 3.1E-12 69.7 12.9 118 250-371 11-130 (131)
127 1p5q_A FKBP52, FK506-binding p 98.8 4.9E-08 1.7E-12 84.3 12.6 127 251-382 147-292 (336)
128 2vgx_A Chaperone SYCD; alterna 98.8 1.9E-08 6.7E-13 75.5 8.5 96 252-349 22-119 (148)
129 2c2l_A CHIP, carboxy terminus 98.8 3.1E-08 1.1E-12 83.3 10.1 192 184-384 3-199 (281)
130 3gw4_A Uncharacterized protein 98.8 9.3E-08 3.2E-12 75.8 12.5 153 197-349 4-177 (203)
131 2uy1_A Cleavage stimulation fa 98.8 4.3E-06 1.5E-10 75.9 24.2 194 32-245 11-242 (493)
132 3gyz_A Chaperone protein IPGC; 98.8 2.8E-07 9.6E-12 69.1 13.6 98 251-351 36-135 (151)
133 2kck_A TPR repeat; tetratricop 98.7 2.1E-07 7E-12 65.7 12.1 99 286-386 5-108 (112)
134 3dra_A Protein farnesyltransfe 98.7 2.5E-06 8.5E-11 71.8 20.2 192 188-383 70-286 (306)
135 2uy1_A Cleavage stimulation fa 98.7 2E-06 6.9E-11 78.0 21.1 351 12-383 11-412 (493)
136 2e2e_A Formate-dependent nitri 98.7 7.8E-08 2.7E-12 74.6 10.1 126 226-356 20-150 (177)
137 4f3v_A ESX-1 secretion system 98.7 5.3E-07 1.8E-11 74.3 15.1 183 197-384 18-237 (282)
138 4f3v_A ESX-1 secretion system 98.7 2.7E-07 9.1E-12 76.0 13.2 205 93-318 18-240 (282)
139 3gw4_A Uncharacterized protein 98.7 5.3E-07 1.8E-11 71.4 14.8 157 227-384 3-176 (203)
140 1a17_A Serine/threonine protei 98.7 6.3E-07 2.1E-11 68.4 14.4 127 218-347 15-145 (166)
141 2xcb_A PCRH, regulatory protei 98.7 1.2E-07 4.3E-12 70.5 10.0 94 254-349 21-116 (142)
142 2fbn_A 70 kDa peptidylprolyl i 98.7 5.1E-07 1.7E-11 71.4 13.7 96 288-385 89-187 (198)
143 3upv_A Heat shock protein STI1 98.7 2.3E-07 7.8E-12 67.4 10.6 93 289-383 6-100 (126)
144 2vgx_A Chaperone SYCD; alterna 98.7 9.3E-08 3.2E-12 71.7 8.4 96 286-383 20-117 (148)
145 1hxi_A PEX5, peroxisome target 98.6 2.5E-07 8.6E-12 66.6 10.3 94 289-384 19-114 (121)
146 1elw_A TPR1-domain of HOP; HOP 98.6 9.1E-07 3.1E-11 62.9 13.3 108 252-363 5-114 (118)
147 2e2e_A Formate-dependent nitri 98.6 3.4E-07 1.2E-11 70.9 11.7 115 264-382 23-142 (177)
148 4gcn_A Protein STI-1; structur 98.6 1.8E-07 6E-12 68.1 8.7 95 253-349 10-113 (127)
149 3q49_B STIP1 homology and U bo 98.6 5.8E-07 2E-11 66.2 11.8 98 250-349 8-107 (137)
150 2lni_A Stress-induced-phosphop 98.6 4.3E-07 1.5E-11 66.3 11.0 98 285-384 14-113 (133)
151 3sz7_A HSC70 cochaperone (SGT) 98.6 2.7E-07 9.2E-12 70.6 10.1 108 250-361 10-119 (164)
152 2xcb_A PCRH, regulatory protei 98.6 4.3E-07 1.5E-11 67.5 10.9 96 287-384 18-115 (142)
153 1na0_A Designed protein CTPR3; 98.6 6.3E-07 2.1E-11 64.5 11.3 96 287-384 9-106 (125)
154 2dba_A Smooth muscle cell asso 98.6 2.1E-06 7.1E-11 64.0 14.4 111 250-365 27-143 (148)
155 3sz7_A HSC70 cochaperone (SGT) 98.6 7.7E-07 2.6E-11 68.0 12.0 95 216-313 11-105 (164)
156 4b4t_Q 26S proteasome regulato 98.6 1.3E-06 4.3E-11 78.3 15.2 192 192-383 11-244 (434)
157 1elw_A TPR1-domain of HOP; HOP 98.6 7.9E-07 2.7E-11 63.2 11.2 97 286-384 3-101 (118)
158 2dba_A Smooth muscle cell asso 98.6 9.4E-07 3.2E-11 65.9 11.9 98 285-384 26-128 (148)
159 1p5q_A FKBP52, FK506-binding p 98.6 1.1E-06 3.7E-11 75.9 13.6 94 252-347 197-293 (336)
160 4gcn_A Protein STI-1; structur 98.5 1E-06 3.6E-11 64.0 11.1 94 289-383 10-111 (127)
161 2vyi_A SGTA protein; chaperone 98.5 1.7E-06 5.7E-11 62.8 12.2 93 185-278 12-107 (131)
162 1elr_A TPR2A-domain of HOP; HO 98.5 1.2E-06 4.1E-11 63.6 11.2 110 252-366 5-123 (131)
163 3q49_B STIP1 homology and U bo 98.5 1.7E-06 5.9E-11 63.6 12.0 96 286-383 8-105 (137)
164 2fbn_A 70 kDa peptidylprolyl i 98.5 2E-07 6.8E-12 73.8 7.2 128 219-348 41-186 (198)
165 3upv_A Heat shock protein STI1 98.5 1.3E-06 4.5E-11 63.3 11.0 95 253-349 6-102 (126)
166 4b4t_Q 26S proteasome regulato 98.5 3.7E-06 1.3E-10 75.2 16.0 207 119-347 11-244 (434)
167 2xev_A YBGF; tetratricopeptide 98.5 8.9E-07 3.1E-11 64.4 9.7 101 255-359 6-114 (129)
168 3q7a_A Farnesyltransferase alp 98.5 7.1E-05 2.4E-09 63.8 22.0 145 200-347 140-330 (349)
169 2kck_A TPR repeat; tetratricop 98.5 1.2E-06 4E-11 61.7 9.6 96 252-349 7-107 (112)
170 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 3.1E-06 1.1E-10 76.3 14.5 130 251-382 268-413 (457)
171 1wao_1 Serine/threonine protei 98.5 6E-07 2.1E-11 81.3 9.6 117 259-379 14-134 (477)
172 2xev_A YBGF; tetratricopeptide 98.4 5.2E-06 1.8E-10 60.2 12.9 91 220-313 6-102 (129)
173 3ro3_A PINS homolog, G-protein 98.4 1.3E-06 4.5E-11 66.1 10.0 131 253-383 11-157 (164)
174 3ro3_A PINS homolog, G-protein 98.4 1.7E-06 6E-11 65.4 10.5 97 253-349 51-159 (164)
175 2hr2_A Hypothetical protein; a 98.4 1.6E-06 5.4E-11 64.5 9.4 61 321-383 59-130 (159)
176 1elr_A TPR2A-domain of HOP; HO 98.4 1.4E-06 4.7E-11 63.3 9.0 97 287-385 4-109 (131)
177 1hxi_A PEX5, peroxisome target 98.4 2.4E-06 8.2E-11 61.4 9.4 94 254-349 20-115 (121)
178 3rkv_A Putative peptidylprolyl 98.4 2.2E-06 7.4E-11 65.3 9.7 110 251-362 11-139 (162)
179 3k9i_A BH0479 protein; putativ 98.3 8.1E-07 2.8E-11 63.5 6.2 91 263-356 2-96 (117)
180 1ihg_A Cyclophilin 40; ppiase 98.3 6.4E-06 2.2E-10 71.9 12.9 89 286-376 272-362 (370)
181 3dss_A Geranylgeranyl transfer 98.3 0.00023 8E-09 60.3 21.8 131 123-260 40-188 (331)
182 3rkv_A Putative peptidylprolyl 98.3 3.3E-06 1.1E-10 64.2 9.5 102 217-320 12-131 (162)
183 2c2l_A CHIP, carboxy terminus 98.3 4.1E-06 1.4E-10 70.2 10.8 99 250-351 3-103 (281)
184 3k9i_A BH0479 protein; putativ 98.3 1.6E-06 5.5E-11 61.9 6.8 83 229-313 3-87 (117)
185 3q7a_A Farnesyltransferase alp 98.3 7.3E-05 2.5E-09 63.7 17.6 192 188-382 91-329 (349)
186 2if4_A ATFKBP42; FKBP-like, al 98.3 1.8E-06 6.1E-11 74.5 7.3 146 217-384 180-328 (338)
187 2l6j_A TPR repeat-containing p 98.2 1.1E-06 3.9E-11 61.8 4.5 94 286-381 3-104 (111)
188 3n71_A Histone lysine methyltr 98.2 6.8E-06 2.3E-10 74.1 10.3 124 260-385 318-465 (490)
189 1wao_1 Serine/threonine protei 98.2 1.9E-05 6.5E-10 71.5 12.3 116 193-311 14-134 (477)
190 2if4_A ATFKBP42; FKBP-like, al 98.2 8.9E-06 3E-10 70.1 9.7 150 184-351 178-330 (338)
191 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2.9E-05 9.8E-10 70.0 13.0 95 251-347 317-414 (457)
192 3dss_A Geranylgeranyl transfer 98.1 0.00053 1.8E-08 58.1 19.6 218 159-383 40-303 (331)
193 1dce_A Protein (RAB geranylger 98.1 0.00021 7.1E-09 66.0 17.9 170 199-373 43-244 (567)
194 2hr2_A Hypothetical protein; a 98.1 9.5E-06 3.3E-10 60.3 7.2 102 254-357 14-138 (159)
195 1ihg_A Cyclophilin 40; ppiase 98.0 4.8E-05 1.7E-09 66.3 11.4 88 251-340 273-362 (370)
196 1na3_A Designed protein CTPR2; 98.0 4.7E-05 1.6E-09 51.0 9.1 80 287-368 9-90 (91)
197 3n71_A Histone lysine methyltr 98.0 3.9E-05 1.3E-09 69.1 10.9 126 224-349 317-465 (490)
198 2kat_A Uncharacterized protein 98.0 2.5E-05 8.7E-10 55.3 7.8 80 268-349 2-83 (115)
199 3ma5_A Tetratricopeptide repea 97.9 4.6E-05 1.6E-09 52.4 8.2 62 287-348 7-70 (100)
200 1dce_A Protein (RAB geranylger 97.8 0.00046 1.6E-08 63.7 15.4 160 229-395 42-230 (567)
201 1klx_A Cysteine rich protein B 97.8 0.00026 8.9E-09 51.9 11.1 110 231-349 10-127 (138)
202 2kat_A Uncharacterized protein 97.8 0.00013 4.4E-09 51.5 8.4 78 233-313 2-79 (115)
203 1klx_A Cysteine rich protein B 97.8 0.00051 1.7E-08 50.3 11.8 113 265-387 9-129 (138)
204 1zu2_A Mitochondrial import re 97.8 3.8E-05 1.3E-09 57.0 5.5 84 299-384 14-120 (158)
205 2l6j_A TPR repeat-containing p 97.7 0.00018 6E-09 50.2 8.2 66 317-384 2-67 (111)
206 1zu2_A Mitochondrial import re 97.6 0.00014 4.7E-09 54.0 6.2 86 263-351 14-122 (158)
207 3ma5_A Tetratricopeptide repea 97.6 0.00016 5.3E-09 49.7 6.2 62 319-382 7-68 (100)
208 2kc7_A BFR218_protein; tetratr 97.6 0.00032 1.1E-08 47.8 7.8 80 293-382 6-88 (99)
209 3bee_A Putative YFRE protein; 97.6 0.00035 1.2E-08 47.1 7.7 68 317-386 4-74 (93)
210 1na3_A Designed protein CTPR2; 97.5 0.00041 1.4E-08 46.2 7.8 65 318-384 8-72 (91)
211 1qsa_A Protein (soluble lytic 97.5 0.068 2.3E-06 49.5 25.3 142 19-165 10-153 (618)
212 3qww_A SET and MYND domain-con 97.4 0.00024 8.2E-09 63.0 6.4 84 300-383 311-410 (433)
213 3qww_A SET and MYND domain-con 97.4 0.001 3.4E-08 59.0 10.3 85 263-347 310-410 (433)
214 3qwp_A SET and MYND domain-con 97.3 0.0028 9.7E-08 56.2 12.3 100 258-359 294-414 (429)
215 3qwp_A SET and MYND domain-con 97.3 0.00053 1.8E-08 60.8 7.2 90 294-383 294-399 (429)
216 1wy6_A Hypothetical protein ST 97.3 0.015 5.3E-07 41.0 12.8 141 226-387 17-157 (172)
217 3ly7_A Transcriptional activat 97.2 0.02 6.9E-07 48.9 16.1 143 214-361 192-349 (372)
218 2kc7_A BFR218_protein; tetratr 97.1 0.0013 4.5E-08 44.6 6.6 58 325-384 6-64 (99)
219 3mkq_A Coatomer beta'-subunit; 97.1 0.0059 2E-07 59.2 13.1 130 193-349 607-737 (814)
220 3ly7_A Transcriptional activat 97.0 0.0055 1.9E-07 52.3 10.4 134 247-386 190-341 (372)
221 3u64_A Protein TP_0956; tetrat 96.9 0.0079 2.7E-07 49.2 10.0 82 305-387 181-272 (301)
222 2v5f_A Prolyl 4-hydroxylase su 96.9 0.012 4.2E-07 40.3 9.8 73 287-361 5-86 (104)
223 3lvg_A Clathrin heavy chain 1; 96.8 0.00071 2.4E-08 59.2 3.7 208 15-237 82-325 (624)
224 3mkq_A Coatomer beta'-subunit; 96.8 0.034 1.2E-06 53.8 15.7 26 186-211 682-707 (814)
225 3bee_A Putative YFRE protein; 96.7 0.014 4.8E-07 39.0 8.7 67 284-351 3-74 (93)
226 3mkq_B Coatomer subunit alpha; 96.5 0.15 5.3E-06 38.3 14.0 128 194-345 14-141 (177)
227 3lvg_A Clathrin heavy chain 1; 96.5 0.00017 5.8E-09 63.0 -2.5 237 81-339 54-324 (624)
228 1pc2_A Mitochondria fission pr 96.4 0.034 1.2E-06 40.7 9.7 84 269-356 16-106 (152)
229 2v5f_A Prolyl 4-hydroxylase su 96.3 0.018 6E-07 39.5 7.4 70 250-319 4-79 (104)
230 3mkq_B Coatomer subunit alpha; 96.2 0.14 4.8E-06 38.5 12.4 130 224-382 13-142 (177)
231 1pc2_A Mitochondria fission pr 96.0 0.043 1.5E-06 40.2 8.2 85 232-319 14-104 (152)
232 3u64_A Protein TP_0956; tetrat 95.5 0.06 2E-06 44.1 8.2 104 267-382 179-296 (301)
233 4ady_A RPN2, 26S proteasome re 95.4 1.8 6.1E-05 42.0 18.8 253 91-347 384-657 (963)
234 4gns_B Protein CSD3, chitin bi 95.1 0.24 8.2E-06 46.9 12.2 55 326-382 344-398 (754)
235 4h7y_A Dual specificity protei 95.0 0.26 8.8E-06 35.8 9.1 99 250-351 12-125 (161)
236 1nzn_A CGI-135 protein, fissio 95.0 0.58 2E-05 32.9 10.8 87 267-357 17-110 (126)
237 4h7y_A Dual specificity protei 94.7 0.76 2.6E-05 33.3 10.9 111 214-327 11-136 (161)
238 1wy6_A Hypothetical protein ST 94.7 0.78 2.7E-05 32.6 14.9 137 195-350 17-156 (172)
239 1nzn_A CGI-135 protein, fissio 94.5 0.11 3.8E-06 36.5 6.2 84 232-318 17-106 (126)
240 2ff4_A Probable regulatory pro 94.4 0.1 3.4E-06 45.6 7.2 54 326-381 178-231 (388)
241 4b4t_P 26S proteasome regulato 94.0 1.4 4.9E-05 39.1 13.9 160 186-345 138-321 (445)
242 3ffl_A Anaphase-promoting comp 93.8 0.57 1.9E-05 34.7 9.0 60 219-278 23-90 (167)
243 1v54_E Cytochrome C oxidase po 93.5 1 3.5E-05 30.0 8.9 63 231-295 25-87 (109)
244 4ady_A RPN2, 26S proteasome re 93.2 6.7 0.00023 38.2 21.7 301 62-370 386-721 (963)
245 4fhn_B Nucleoporin NUP120; pro 93.2 1.9 6.4E-05 43.6 14.8 189 191-381 818-1047(1139)
246 4gns_B Protein CSD3, chitin bi 93.2 0.5 1.7E-05 44.7 9.9 121 19-139 251-398 (754)
247 4b4t_P 26S proteasome regulato 92.3 5.7 0.00019 35.2 15.7 251 125-378 29-318 (445)
248 3txn_A 26S proteasome regulato 92.1 5.5 0.00019 34.5 16.5 57 257-313 105-165 (394)
249 1y8m_A FIS1; mitochondria, unk 92.1 1.3 4.4E-05 31.8 8.5 71 284-356 36-112 (144)
250 3ffl_A Anaphase-promoting comp 92.0 1.6 5.5E-05 32.3 9.2 111 189-313 24-148 (167)
251 2y69_E Cytochrome C oxidase su 91.0 2.2 7.6E-05 30.1 8.5 63 231-295 68-130 (152)
252 4fhn_B Nucleoporin NUP120; pro 91.0 2.1 7.1E-05 43.3 12.1 124 256-386 817-969 (1139)
253 3o48_A Mitochondria fission 1 90.9 0.69 2.4E-05 32.7 6.1 71 284-356 37-113 (134)
254 2wpv_A GET4, UPF0363 protein Y 90.8 6.3 0.00022 32.8 17.7 180 62-279 25-216 (312)
255 2ff4_A Probable regulatory pro 90.8 0.93 3.2E-05 39.4 8.3 65 255-321 175-247 (388)
256 3lpz_A GET4 (YOR164C homolog); 89.5 8.6 0.00029 32.3 18.4 150 186-347 36-215 (336)
257 2uwj_G Type III export protein 89.4 3.3 0.00011 27.4 7.8 62 191-255 45-106 (115)
258 1v54_E Cytochrome C oxidase po 89.4 3.4 0.00012 27.5 9.3 57 304-362 27-86 (109)
259 2p58_C Putative type III secre 89.0 3.6 0.00012 27.3 8.1 62 191-255 46-107 (116)
260 3esl_A Checkpoint serine/threo 88.9 4.9 0.00017 30.8 9.8 49 301-349 93-145 (202)
261 3lpz_A GET4 (YOR164C homolog); 88.8 9.7 0.00033 32.0 20.6 167 85-278 39-214 (336)
262 4b4t_R RPN7, 26S proteasome re 88.7 5.1 0.00017 35.3 11.5 108 253-361 133-249 (429)
263 3o48_A Mitochondria fission 1 88.0 5.3 0.00018 28.3 8.7 73 246-319 35-111 (134)
264 1zbp_A Hypothetical protein VP 87.6 6.6 0.00023 31.7 10.2 114 224-349 5-130 (273)
265 3ltj_A Alpharep-4; protein eng 87.5 8 0.00027 29.5 19.2 54 74-127 52-105 (201)
266 3txn_A 26S proteasome regulato 87.2 14 0.00048 32.0 20.2 90 190-279 104-209 (394)
267 3ltm_A Alpha-REP4; protein eng 86.8 9.2 0.00031 29.4 20.1 13 253-265 159-171 (211)
268 4b4t_R RPN7, 26S proteasome re 85.9 13 0.00046 32.6 12.5 96 218-313 133-234 (429)
269 2y69_E Cytochrome C oxidase su 85.5 7.8 0.00027 27.5 9.3 49 312-362 81-129 (152)
270 4a1g_A Mitotic checkpoint seri 84.7 9.5 0.00033 27.8 9.2 51 338-388 84-134 (152)
271 3ltm_A Alpha-REP4; protein eng 84.5 12 0.00041 28.7 18.8 78 50-127 32-110 (211)
272 1y8m_A FIS1; mitochondria, unk 83.2 11 0.00036 27.1 10.3 72 247-319 35-110 (144)
273 2wvi_A Mitotic checkpoint seri 82.6 13 0.00043 27.6 9.1 32 318-349 95-126 (164)
274 1zbp_A Hypothetical protein VP 82.4 3.2 0.00011 33.6 6.2 56 295-351 5-62 (273)
275 3ltj_A Alpharep-4; protein eng 81.1 16 0.00055 27.8 20.8 56 73-128 20-75 (201)
276 1wdy_A 2-5A-dependent ribonucl 80.0 13 0.00043 30.0 9.6 14 62-75 48-61 (285)
277 2wpv_A GET4, UPF0363 protein Y 79.4 26 0.00089 29.2 19.7 152 185-347 33-216 (312)
278 4b4t_S RPN3, 26S proteasome re 77.3 41 0.0014 30.3 13.5 62 184-245 230-299 (523)
279 2fu4_A Ferric uptake regulatio 73.1 11 0.00038 23.8 5.9 62 3-65 4-67 (83)
280 2uwj_G Type III export protein 72.6 18 0.00062 24.0 8.9 47 91-139 49-95 (115)
281 2p58_C Putative type III secre 71.8 19 0.00066 23.9 10.1 46 91-138 50-95 (116)
282 2nsz_A Programmed cell death p 69.3 25 0.00086 24.7 7.4 64 188-251 10-78 (129)
283 4gq2_M Nucleoporin NUP120; bet 67.3 50 0.0017 32.6 11.5 87 257-349 816-927 (950)
284 4aez_C MAD3, mitotic spindle c 67.0 20 0.00067 28.1 6.8 45 305-349 132-180 (223)
285 3eiq_C Programmed cell death p 63.8 68 0.0023 27.3 11.3 234 116-372 58-305 (358)
286 2nsz_A Programmed cell death p 62.4 25 0.00086 24.7 6.3 64 84-148 10-78 (129)
287 3eu9_A Huntingtin-interacting 62.1 23 0.00079 27.5 6.9 199 27-242 17-233 (240)
288 2ion_A PDCD4, programmed cell 61.1 25 0.00087 25.6 6.2 64 188-251 12-80 (152)
289 3qye_A TBC1 domain family memb 61.0 65 0.0022 27.0 9.8 89 37-125 209-307 (331)
290 1oyz_A Hypothetical protein YI 60.6 64 0.0022 25.9 21.9 19 108-126 64-82 (280)
291 1n11_A Ankyrin; clathrin, BAND 58.3 72 0.0025 27.7 10.1 16 195-210 219-234 (437)
292 1n11_A Ankyrin; clathrin, BAND 55.3 60 0.002 28.2 9.0 78 25-107 20-103 (437)
293 2ion_A PDCD4, programmed cell 54.7 22 0.00074 25.9 4.9 63 84-147 12-79 (152)
294 4a1g_A Mitotic checkpoint seri 53.5 31 0.0011 25.1 5.5 59 33-91 82-142 (152)
295 3eyy_A Putative iron uptake re 51.5 25 0.00087 25.3 4.9 61 3-65 6-67 (145)
296 2w57_A Ferric uptake regulatio 51.0 40 0.0014 24.3 6.0 62 3-65 4-67 (150)
297 4b4t_S RPN3, 26S proteasome re 50.6 47 0.0016 29.9 7.2 63 251-313 231-296 (523)
298 2d2s_A Exocyst complex compone 50.1 82 0.0028 24.9 8.0 93 257-349 24-121 (235)
299 2d2s_A Exocyst complex compone 50.0 86 0.003 24.7 8.1 88 222-313 24-117 (235)
300 2qq8_A TBC1 domain family memb 49.7 38 0.0013 28.5 6.4 73 37-109 214-294 (334)
301 2fe3_A Peroxide operon regulat 49.5 68 0.0023 22.9 7.0 58 242-301 13-70 (145)
302 2wvi_A Mitotic checkpoint seri 49.5 39 0.0013 24.9 5.6 58 33-90 77-136 (164)
303 3ygs_P Procaspase 9; apoptosis 49.1 28 0.00096 23.0 4.4 39 199-237 51-89 (97)
304 1wgl_A TOLL-interacting protei 48.9 25 0.00085 20.7 3.6 45 344-391 15-59 (59)
305 4gq2_M Nucleoporin NUP120; bet 48.7 1.5E+02 0.0051 29.3 11.2 121 87-230 816-950 (950)
306 1mzb_A Ferric uptake regulatio 46.8 51 0.0018 23.2 5.9 60 5-65 7-68 (136)
307 2b7e_A PRE-mRNA processing pro 46.4 30 0.001 20.3 3.6 29 268-297 3-31 (59)
308 4ets_A Ferric uptake regulatio 46.0 46 0.0016 24.5 5.6 15 62-76 44-58 (162)
309 3ygs_P Procaspase 9; apoptosis 43.8 36 0.0012 22.4 4.3 36 65-100 52-87 (97)
310 3kea_A K1L; tropism, ANK repea 43.4 1.3E+02 0.0044 24.2 10.1 13 197-209 40-52 (285)
311 3esl_A Checkpoint serine/threo 42.2 1.1E+02 0.0039 23.4 9.5 53 264-317 92-148 (202)
312 4ets_A Ferric uptake regulatio 41.3 95 0.0033 22.7 6.7 45 221-265 37-83 (162)
313 1qsa_A Protein (soluble lytic 40.7 2.3E+02 0.0077 26.3 30.6 307 53-380 74-438 (618)
314 3m0z_A Putative aldolase; MCSG 40.4 40 0.0014 26.3 4.5 82 302-383 146-246 (249)
315 3ljn_A Hypothetical protein; a 40.0 1.4E+02 0.0048 25.0 8.8 14 62-75 62-75 (364)
316 4aez_C MAD3, mitotic spindle c 39.7 64 0.0022 25.2 5.6 59 33-91 131-191 (223)
317 3mv2_A Coatomer subunit alpha; 39.6 1.7E+02 0.0057 24.5 11.2 37 314-351 200-238 (325)
318 3kae_A CDC27, possible protein 39.3 1.2E+02 0.0041 22.7 12.0 89 49-139 30-141 (242)
319 1k1a_A B-cell lymphoma 3-encod 39.3 1.3E+02 0.0044 23.1 9.9 86 23-108 13-103 (241)
320 3bqo_A Telomeric repeat-bindin 39.3 1.1E+02 0.0039 23.3 6.6 24 326-349 124-147 (211)
321 3m6y_A 4-hydroxy-2-oxoglutarat 37.6 40 0.0014 26.6 4.1 81 303-383 170-269 (275)
322 3bqo_A Telomeric repeat-bindin 36.8 1.4E+02 0.0048 22.8 10.5 21 119-139 124-144 (211)
323 3e3v_A Regulatory protein RECX 36.5 1.3E+02 0.0045 22.4 7.2 13 236-248 87-99 (177)
324 1ug3_A EIF4GI, eukaryotic prot 35.6 1.1E+02 0.0039 25.6 7.2 147 54-211 14-167 (339)
325 2fe3_A Peroxide operon regulat 35.6 1.2E+02 0.0041 21.6 7.6 64 100-164 9-72 (145)
326 2xig_A Ferric uptake regulatio 35.5 1.2E+02 0.0042 21.7 7.0 42 224-265 34-75 (150)
327 2f6m_A Suppressor protein STP2 35.3 74 0.0025 19.1 4.9 51 321-373 4-54 (65)
328 2qfz_A TBC1 domain family memb 35.1 49 0.0017 27.9 4.9 74 37-110 230-315 (345)
329 1oyz_A Hypothetical protein YI 34.8 1.7E+02 0.0059 23.3 22.5 184 107-304 32-223 (280)
330 2r9g_A AAA ATPase, central reg 34.8 1.5E+02 0.0052 22.6 8.8 47 219-266 14-63 (204)
331 3bge_A Predicted ATPase; struc 34.5 1.5E+02 0.0052 22.6 7.0 45 221-265 9-56 (201)
332 3kea_A K1L; tropism, ANK repea 34.5 91 0.0031 25.2 6.4 150 16-178 29-186 (285)
333 3bu8_A Telomeric repeat-bindin 34.5 1.6E+02 0.0055 22.8 7.4 69 232-303 88-163 (235)
334 2o03_A Probable zinc uptake re 34.4 95 0.0033 21.6 5.6 47 221-267 15-61 (131)
335 2ijq_A Hypothetical protein; s 34.2 1.4E+02 0.0047 21.9 7.9 58 290-348 36-104 (161)
336 3mwm_A ZUR, putative metal upt 34.1 87 0.003 22.2 5.4 47 221-267 18-64 (139)
337 2yru_A Steroid receptor RNA ac 34.0 34 0.0012 23.6 3.0 48 31-78 40-89 (118)
338 3hzj_A Rabgap1L, RAB GTPase-ac 33.8 97 0.0033 25.6 6.5 68 37-105 175-251 (310)
339 1bpo_A Protein (clathrin); cla 33.2 2.6E+02 0.0089 24.8 11.8 34 180-213 356-389 (494)
340 1oai_A Nuclear RNA export fact 32.1 25 0.00085 20.7 1.8 24 125-148 33-56 (59)
341 2zu6_B Programmed cell death p 32.1 1.2E+02 0.0042 25.0 6.6 64 188-251 169-237 (307)
342 4b4t_O 26S proteasome regulato 32.0 2.2E+02 0.0074 24.6 8.5 57 257-313 82-153 (393)
343 1wdy_A 2-5A-dependent ribonucl 31.8 1.9E+02 0.0064 22.8 12.8 46 62-107 14-62 (285)
344 3ctd_A Putative ATPase, AAA fa 31.7 1.8E+02 0.0061 22.5 8.1 49 217-265 33-84 (213)
345 3hra_A Ankyrin repeat family p 31.3 83 0.0028 23.4 5.4 75 27-106 13-94 (201)
346 1fkm_A Protein (GYP1P), ORF YO 30.9 1.3E+02 0.0045 26.0 7.0 44 3-46 218-261 (396)
347 1k1a_A B-cell lymphoma 3-encod 30.3 1.5E+02 0.0051 22.7 6.9 14 298-311 158-171 (241)
348 3ljn_A Hypothetical protein; a 30.3 1.4E+02 0.0049 24.9 7.2 129 2-137 34-195 (364)
349 2yru_A Steroid receptor RNA ac 27.9 99 0.0034 21.3 4.5 42 238-279 48-89 (118)
350 2p1h_A APAF-1, apoptotic prote 27.4 1.3E+02 0.0043 19.4 5.5 36 198-233 49-84 (94)
351 1bpo_A Protein (clathrin); cla 26.8 3.4E+02 0.012 24.1 9.8 140 229-382 342-483 (494)
352 3mwm_A ZUR, putative metal upt 26.8 65 0.0022 22.8 3.7 37 331-368 25-61 (139)
353 2dod_A Transcription elongatio 26.6 72 0.0025 20.2 3.4 37 128-165 16-52 (82)
354 4g8k_A 2-5A-dependent ribonucl 26.3 2.7E+02 0.0092 22.8 12.2 53 22-78 28-84 (337)
355 2w57_A Ferric uptake regulatio 26.0 1.8E+02 0.0063 20.8 6.1 34 232-265 33-66 (150)
356 2o03_A Probable zinc uptake re 25.6 1.7E+02 0.0057 20.3 5.6 48 117-165 15-62 (131)
357 2xig_A Ferric uptake regulatio 25.3 1.9E+02 0.0065 20.7 7.3 52 112-164 26-77 (150)
358 2etb_A Transient receptor pote 24.7 94 0.0032 24.4 4.7 13 367-379 230-242 (256)
359 2p22_A Suppressor protein STP2 24.4 1.1E+02 0.0037 22.8 4.4 57 316-374 108-164 (174)
360 2ijq_A Hypothetical protein; s 24.1 2.1E+02 0.0073 20.9 7.6 52 228-279 44-103 (161)
361 2etb_A Transient receptor pote 24.0 59 0.002 25.6 3.4 84 23-107 6-113 (256)
362 1ug3_A EIF4GI, eukaryotic prot 22.5 3.4E+02 0.012 22.7 13.8 26 85-110 15-40 (339)
363 1ya0_A SMG-7 transcript varian 22.1 3.3E+02 0.011 24.4 8.0 73 293-367 158-232 (497)
364 3eyy_A Putative iron uptake re 21.9 2.2E+02 0.0075 20.2 7.3 48 115-164 21-68 (145)
365 4b4t_O 26S proteasome regulato 21.6 3.9E+02 0.013 22.9 10.4 86 222-307 82-189 (393)
366 2qx5_A Nucleoporin NIC96; mRNA 21.4 5.1E+02 0.017 24.3 16.4 21 298-318 549-569 (661)
367 2ko4_A Mediator of RNA polymer 21.2 1E+02 0.0035 19.3 3.1 31 282-312 31-61 (81)
368 3eu9_A Huntingtin-interacting 21.1 2.7E+02 0.0093 21.0 9.4 209 52-278 8-234 (240)
369 1mzb_A Ferric uptake regulatio 20.7 2.2E+02 0.0076 19.8 7.4 35 231-265 33-67 (136)
370 3kae_A CDC27, possible protein 20.3 2.8E+02 0.0095 20.8 15.1 80 197-278 45-141 (242)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.3e-36 Score=280.41 Aligned_cols=362 Identities=12% Similarity=0.018 Sum_probs=267.2
Q ss_pred CCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCC--CCChhhHHHHHHH
Q 048364 14 SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELP--ERNAVTWNTMIKG 90 (400)
Q Consensus 14 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~ 90 (400)
++...|+.++..+.+.|++++|.++|+++.+ ..|+..++..+...+ ..|++++|..+|+.+. .++..+++.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 4555666666666666666666666666664 334545566666666 6666666666666663 3456666666666
Q ss_pred HHcCCChHHHHHHHhhCCCC-------------------ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCC--------
Q 048364 91 YSKSGNVCEARDFFERMPLR-------------------NVASWSAMIAAYLNAGAYDPGLKLFREMISNEG-------- 143 (400)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~~-------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-------- 143 (400)
|.+.|++++|.++|+++.+. +..+|+.++.+|.+.|++++|+++|++|.+...
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 66666666666666643322 255666666666666666666666666542110
Q ss_pred -------------------------------------------------------------CCCCHHHHHHHHHHhhccc
Q 048364 144 -------------------------------------------------------------LTPDQMTIGAVLSGCSHLG 162 (400)
Q Consensus 144 -------------------------------------------------------------~~p~~~~~~~ll~~~~~~~ 162 (400)
.+++..++..++.++.+.|
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhc
Confidence 1255666777777777777
Q ss_pred chhhhhhhhhhhHHHhccc---------------------------------cchHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048364 163 SVGLLMGKSAHGFIVKNEW---------------------------------ELNEQIATILVDMYAKCGFLKYALMVFE 209 (400)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 209 (400)
++++ |..+++.+.+.+. +.+..+++.++.+|.+.|++++|.++|+
T Consensus 320 ~~~~--A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 320 RFID--VLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp CHHH--HHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHH--HHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 7777 6666666654331 2356677888888888899999988888
Q ss_pred hccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC
Q 048364 210 LMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR 286 (400)
Q Consensus 210 ~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 286 (400)
++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+.+.+. .+.+
T Consensus 398 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~ 474 (597)
T 2xpi_A 398 KSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYD 474 (597)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 8764 356688889999999999999999999988764 347788888999999999999999999998853 2446
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhc-------cCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchH
Q 048364 287 IQHYGCMVDLFGKAGFLEEAYEVIRTM-------RLEPN--VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357 (400)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 357 (400)
..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|...++++.+.+ | .+..+
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p-~~~~~ 552 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-T-NDANV 552 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S-CCHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C-CChHH
Confidence 788999999999999999999999888 33676 6789999999999999999999999999988 7 78899
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 358 FTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 358 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
|..++.+|.+.|++++|.+.++++.+.
T Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 553 HTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999988763
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-35 Score=278.13 Aligned_cols=348 Identities=11% Similarity=0.013 Sum_probs=277.5
Q ss_pred hcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCC--CCChhhHHHHHHHHHcCCChHHHHH
Q 048364 26 CTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELP--ERNAVTWNTMIKGYSKSGNVCEARD 102 (400)
Q Consensus 26 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 102 (400)
+...|.+..+...+..+ ..++...|+.++..+ +.|++++|..+|+++. .|+..++..++.+|.+.|++++|..
T Consensus 63 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTD----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccCccCCCCCccccc----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 34455566665555433 346888999999999 9999999999999987 4788899999999999999999999
Q ss_pred HHhhCC--CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcC--------------CCCCCHHHHHHHHHHhhcccchhh
Q 048364 103 FFERMP--LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNE--------------GLTPDQMTIGAVLSGCSHLGSVGL 166 (400)
Q Consensus 103 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--------------~~~p~~~~~~~ll~~~~~~~~~~~ 166 (400)
+|+++. .++..+++.++.+|.+.|++++|.++|+++.... +.+++..+|+.++.+|.+.|++++
T Consensus 139 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 139 LLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 999984 6789999999999999999999999998643122 234568899999999999999999
Q ss_pred hhhhhhhhHHHhccc-----------------------------------------------------------------
Q 048364 167 LMGKSAHGFIVKNEW----------------------------------------------------------------- 181 (400)
Q Consensus 167 ~~a~~~~~~~~~~~~----------------------------------------------------------------- 181 (400)
|...++.+.+.+.
T Consensus 219 --A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 219 --AKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp --HHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 8888888765432
Q ss_pred -----cchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHH
Q 048364 182 -----ELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253 (400)
Q Consensus 182 -----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 253 (400)
+++..+++.++.+|.+.|++++|.++|+++.+ .+..+++.++.++.+.|++++|..+++++.+.. +.+..+
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 375 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVT 375 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHH
Confidence 15566777788888888888888888887764 356678888888888888888888888887542 446788
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHh
Q 048364 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKE 331 (400)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~ 331 (400)
+..++.+|.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++ ...| +..+|..++.+|.+
T Consensus 376 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 376 WLAVGIYYLCVNKISEARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 888999999999999999999988852 2345778999999999999999999999988 4344 67889999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 332 HKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 332 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
.|++++|.++|+++.+.. | .++.+|..++.+|.+.|++++|.++|+++.+.
T Consensus 454 ~g~~~~A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 454 LGNILLANEYLQSSYALF-Q-YDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HTCHHHHHHHHHHHHHHC-C-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999988 7 78899999999999999999999999998875
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=6.1e-31 Score=238.54 Aligned_cols=184 Identities=16% Similarity=0.171 Sum_probs=151.1
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccc---------hhhhhhhhhhhHHHhccccc
Q 048364 113 ASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGS---------VGLLMGKSAHGFIVKNEWEL 183 (400)
Q Consensus 113 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~---------~~~~~a~~~~~~~~~~~~~~ 183 (400)
..++.+|.+|++.|++++|+++|++|. ..|+.||..||+++|.+|++.+. ++. |..+++.|.+.|+.|
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~-~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~--A~~lf~~M~~~G~~P 103 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEAR-RNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR--GFDIFKQMIVDKVVP 103 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHH-HHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH--HHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH--HHHHHHHHHHhCCCC
Confidence 457777888888888888888888888 67888888888888888876554 455 777888888888888
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhccC----CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048364 184 NEQIATILVDMYAKCGFLKYALMVFELMEE----RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLT 259 (400)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 259 (400)
|..+|++|+.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+++|.
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~ 183 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK 183 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 888888888888888888888888888864 6888888888888888888888888888888888888888888888
Q ss_pred HHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhc
Q 048364 260 ACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300 (400)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 300 (400)
+|++.|++++|.+++++|.+ .+..|+..||+.++..|+..
T Consensus 184 ~~~~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 184 VSMDTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred HHhhCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 88888888888888888884 48888888888888877653
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=5.1e-28 Score=215.35 Aligned_cols=350 Identities=12% Similarity=0.085 Sum_probs=300.2
Q ss_pred HHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCh
Q 048364 22 ILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE---RNAVTWNTMIKGYSKSGNV 97 (400)
Q Consensus 22 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 97 (400)
+...+.+.|++++|.+.++.+.+..+. +...+..+...+ ..|++++|...++...+ .+..+|..+..++.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 345667889999999999999886533 344555556666 99999999999988763 4677899999999999999
Q ss_pred HHHHHHHhhCC--CC-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCH-HHHHHHHHHhhcccchhhhhhhhhh
Q 048364 98 CEARDFFERMP--LR-NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ-MTIGAVLSGCSHLGSVGLLMGKSAH 173 (400)
Q Consensus 98 ~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~a~~~~ 173 (400)
++|++.|+++. .| +..+|..+..++.+.|++++|.+.|+++.+ ..|+. ..+..+...+...|++++ |...+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~--A~~~~ 158 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ---YNPDLYCVRSDLGNLLKALGRLEE--AKACY 158 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH---HCTTCTHHHHHHHHHHHTTSCHHH--HHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHH--HHHHH
Confidence 99999999876 34 567899999999999999999999999983 35654 456778888899999999 99999
Q ss_pred hHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC
Q 048364 174 GFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN 250 (400)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 250 (400)
..+.+.. +.+..++..+..+|...|++++|...|+++.+ | +...|..+...+...|++++|...+++..... +.+
T Consensus 159 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 9988764 33577889999999999999999999999875 3 45678888999999999999999999988763 235
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cC-CccHHHHHHHHHH
Q 048364 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RL-EPNVIIWGSFLAA 328 (400)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-~p~~~~~~~l~~~ 328 (400)
..++..+..++...|++++|...++++.+. .+.+..+|..++.++.+.|++++|.+.|+++ .. +++..++..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 788999999999999999999999999853 2345678999999999999999999999998 33 4477899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 329 CKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 329 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
+...|++++|...++++.+.. | .+..++..++.+|.+.|++++|.+.++++.+
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVF-P-EFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-T-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhcC-C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999988 8 7889999999999999999999999999986
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1e-30 Score=237.11 Aligned_cols=212 Identities=18% Similarity=0.226 Sum_probs=170.3
Q ss_pred HHHHHHHHHhcCCCCCCH-HHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048364 131 GLKLFREMISNEGLTPDQ-MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFE 209 (400)
Q Consensus 131 a~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 209 (400)
+..+.+++. +.+..+.+ ..++.+|.+|++.|++++ |.++++.|.+.|+.||..+|++||.+|++.+....+
T Consensus 9 ~e~L~~~~~-~k~~~~spe~~l~~~id~c~k~G~~~~--A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~----- 80 (501)
T 4g26_A 9 SENLSRKAK-KKAIQQSPEALLKQKLDMCSKKGDVLE--ALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES----- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHH--HHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-----
T ss_pred HHHHHHHHH-HhcccCCCHHHHHHHHHHHHhCCCHHH--HHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-----
Confidence 344445555 44554433 357777888888888888 888888888888888888888888887766653221
Q ss_pred hccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhh
Q 048364 210 LMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQH 289 (400)
Q Consensus 210 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 289 (400)
.+.+..+.|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+ .|+.||..+
T Consensus 81 -----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-~g~~Pd~~t 142 (501)
T 4g26_A 81 -----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA-FGIQPRLRS 142 (501)
T ss_dssp -----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHH
T ss_pred -----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCccce
Confidence 23345688999999999999999999999999999999999999999999984 499999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc---cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhh
Q 048364 290 YGCMVDLFGKAGFLEEAYEVIRTM---RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366 (400)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 366 (400)
|+.+|.+|++.|++++|.++|++| |+.||..||++||.+|++.|++++|.+++++|.+.+ ..|+..||..+...|.
T Consensus 143 yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g-~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 143 YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV-RQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SSBCHHHHHHHHHHHH
T ss_pred ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC-CCcCHHHHHHHHHHHh
Confidence 999999999999999999999999 899999999999999999999999999999999999 4489999999999887
Q ss_pred ccc
Q 048364 367 MNE 369 (400)
Q Consensus 367 ~~g 369 (400)
..+
T Consensus 222 s~~ 224 (501)
T 4g26_A 222 SEV 224 (501)
T ss_dssp SHH
T ss_pred cCc
Confidence 643
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=4.6e-27 Score=209.17 Aligned_cols=355 Identities=12% Similarity=0.074 Sum_probs=302.8
Q ss_pred hhHHHHhCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC--C
Q 048364 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE--R 79 (400)
Q Consensus 3 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~--~ 79 (400)
.++.+.+.. |.+...+..+...+...|++++|...++...+..+ .+...|..+...+ ..|++++|...|+++.+ |
T Consensus 21 ~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 98 (388)
T 1w3b_A 21 HCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP 98 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCc
Confidence 344444332 33456677777888899999999999999988653 3677899999999 99999999999998863 4
Q ss_pred -ChhhHHHHHHHHHcCCChHHHHHHHhhCC--CC-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCC-CHHHHHHH
Q 048364 80 -NAVTWNTMIKGYSKSGNVCEARDFFERMP--LR-NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP-DQMTIGAV 154 (400)
Q Consensus 80 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l 154 (400)
+..+|..+..++.+.|++++|.+.|+++. .| +...+..+...+...|++++|.+.|+++.+. .| +..++..+
T Consensus 99 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l 175 (388)
T 1w3b_A 99 DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET---QPNFAVAWSNL 175 (388)
T ss_dssp TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 45679999999999999999999999876 34 4567888889999999999999999999832 44 46789999
Q ss_pred HHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCC
Q 048364 155 LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGY 231 (400)
Q Consensus 155 l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 231 (400)
...+...|+++. |...++.+.+... .+...+..+...+...|++++|...|++..+ | +..++..+...+...|+
T Consensus 176 ~~~~~~~g~~~~--A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 252 (388)
T 1w3b_A 176 GCVFNAQGEIWL--AIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL 252 (388)
T ss_dssp HHHHHTTTCHHH--HHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHH--HHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCC
Confidence 999999999999 9999999988753 3567888999999999999999999998865 3 46788999999999999
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 048364 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIR 311 (400)
Q Consensus 232 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 311 (400)
+++|+..|+++.+.+ +.+..++..+..++.+.|++++|...++++.+. .+.+..++..+...+.+.|++++|.+.++
T Consensus 253 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 329 (388)
T 1w3b_A 253 IDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYR 329 (388)
T ss_dssp HHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999864 235678999999999999999999999999963 35678899999999999999999999999
Q ss_pred hc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccc
Q 048364 312 TM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEK 370 (400)
Q Consensus 312 ~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 370 (400)
++ ...| +..++..+..++.+.|++++|...++++++.. | ....++..+...+...|+
T Consensus 330 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p-~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 330 KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-P-TFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-T-TCHHHHHHHHHHHHHTCC
T ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C-CCHHHHHhHHHHHHHccC
Confidence 98 5555 57789999999999999999999999999988 8 788899998888776653
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.7e-25 Score=205.10 Aligned_cols=357 Identities=9% Similarity=-0.042 Sum_probs=293.4
Q ss_pred hhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHH
Q 048364 17 FSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE--R-NAVTWNTMIKGYS 92 (400)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~ 92 (400)
..+......+.+.|++++|.+.|+++++.. |+...+..+..++ ..|++++|...++++.+ | +..+|..+..++.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 456677778888899999999999998865 5778888888888 99999999999988763 3 5668888889999
Q ss_pred cCCChHHHHHHHhhCCC--C-C----------------------------------------------------------
Q 048364 93 KSGNVCEARDFFERMPL--R-N---------------------------------------------------------- 111 (400)
Q Consensus 93 ~~~~~~~a~~~~~~~~~--~-~---------------------------------------------------------- 111 (400)
+.|++++|...|+++.. | +
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 99999999988877531 1 1
Q ss_pred ---------------------hhhHHHHHHHHHh---cCCcchHHHHHHHHHh-----cCCC-------CCCHHHHHHHH
Q 048364 112 ---------------------VASWSAMIAAYLN---AGAYDPGLKLFREMIS-----NEGL-------TPDQMTIGAVL 155 (400)
Q Consensus 112 ---------------------~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~-----~~~~-------~p~~~~~~~ll 155 (400)
...+......+.. .|++++|+.+|+++.+ .... +.+..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 2233333334443 8999999999999983 1111 12345678888
Q ss_pred HHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCCh
Q 048364 156 SGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYS 232 (400)
Q Consensus 156 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 232 (400)
..+...|+++. |...++.+.+.... ..++..+..+|...|++++|...++++.+ .+...+..+...+...|++
T Consensus 245 ~~~~~~~~~~~--A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 245 IFKFLKNDPLG--AHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHSSCHHH--HHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHCCCHHH--HHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 89999999999 99999999887655 88889999999999999999999998876 3567888899999999999
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHh
Q 048364 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312 (400)
Q Consensus 233 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 312 (400)
++|...+++...... .+...+..+...+...|++++|...++.+.+. .+.+...+..+...|...|++++|...+++
T Consensus 321 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 321 DQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp THHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999988643 35678888999999999999999999999853 244667888999999999999999999998
Q ss_pred c-cCCcc-------HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHH
Q 048364 313 M-RLEPN-------VIIWGSFLAACKE---HKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLM 381 (400)
Q Consensus 313 ~-~~~p~-------~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 381 (400)
+ ...|+ ...+..+...+.. .|++++|...++++.+.. | .+..++..++.+|...|++++|...+++.
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-P-RSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-c-ccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8 22232 3388889999999 999999999999999998 8 78899999999999999999999999998
Q ss_pred hcc
Q 048364 382 LNQ 384 (400)
Q Consensus 382 ~~~ 384 (400)
.+.
T Consensus 476 ~~~ 478 (514)
T 2gw1_A 476 ADL 478 (514)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=2.3e-23 Score=188.96 Aligned_cols=318 Identities=14% Similarity=0.097 Sum_probs=229.7
Q ss_pred chhhhhHHHHHH-HhCCHHHHHHHHhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHhhCC---CCChhhHHHHHHHH
Q 048364 50 HVYVATSLLHEY-VVTSFGFARKLFDELPE---RNAVTWNTMIKGYSKSGNVCEARDFFERMP---LRNVASWSAMIAAY 122 (400)
Q Consensus 50 ~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~ 122 (400)
+...+..+...+ ..|++++|..+|+++.+ .+..+|..+..++...|++++|++.|+++. +.+..+|..+..+|
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 445566666666 67777777777766542 345666667777777777777777777654 23456677777777
Q ss_pred HhcCCcchHHHHHHHHHhcCCCCCCH----HHHHHH------------HHHhhcccchhhhhhhhhhhHHHhccccchHH
Q 048364 123 LNAGAYDPGLKLFREMISNEGLTPDQ----MTIGAV------------LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQ 186 (400)
Q Consensus 123 ~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~l------------l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 186 (400)
.+.|++++|.+.|+++. ...|+. ..+..+ ...+...|+++. |...++.+.+.. +.+..
T Consensus 105 ~~~g~~~~A~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--A~~~~~~~~~~~-~~~~~ 178 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVL---KSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTA--AIAFLDKILEVC-VWDAE 178 (450)
T ss_dssp HHTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH--HHHHHHHHHHHC-TTCHH
T ss_pred HHcCCHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHhC-CCChH
Confidence 77777777777777776 234433 333333 334677777777 777777776654 33566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC-HHHHHHH-----
Q 048364 187 IATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN-EMTFTGV----- 257 (400)
Q Consensus 187 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l----- 257 (400)
++..++.+|.+.|++++|...|+++.+ .+..+|..++..|...|++++|+..|+++... .|+ ...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHH
Confidence 777888888888888888888887764 35677888888888888888888888888765 333 3334333
Q ss_pred -------HHHHHhcCChhhHHHHHHHhhhhcCCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHH
Q 048364 258 -------LTACVHTGLVDEGRKYFKMIDEEYDLEPR-----IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWG 323 (400)
Q Consensus 258 -------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~ 323 (400)
..++.+.|++++|...|+.+.+. .|+ ...+..++.++.+.|++++|...++++ ...| +...|.
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 333 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 77888999999999999999853 343 347888889999999999999999987 4455 678899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHH------------hhccc-----chHHHHHHHHH
Q 048364 324 SFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDL------------YTMNE-----KWEGAERVRKL 380 (400)
Q Consensus 324 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~a~~~~~~ 380 (400)
.+..+|...|++++|...++++++.. | .++.++..+..+ |...| +.+++.+.+++
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~~-p-~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEHN-E-NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTS-S-SCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-c-chHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 99999999999999999999999988 8 778888887733 44445 45566666665
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=4.8e-23 Score=186.90 Aligned_cols=350 Identities=13% Similarity=0.011 Sum_probs=278.1
Q ss_pred CCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC---CChhhHHHHH
Q 048364 13 PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE---RNAVTWNTMI 88 (400)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~---~~~~~~~~l~ 88 (400)
+.+...+..+...+.+.|++++|.++|+.+.+..+ .+...+..+...+ ..|++++|...|+++.+ .+..++..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 44677789999999999999999999999998643 3677888888888 99999999999999874 3577899999
Q ss_pred HHHHcCCChHHHHHHHhhCCC--C-Ch---hhHHHH------------HHHHHhcCCcchHHHHHHHHHhcCCCCCCHHH
Q 048364 89 KGYSKSGNVCEARDFFERMPL--R-NV---ASWSAM------------IAAYLNAGAYDPGLKLFREMISNEGLTPDQMT 150 (400)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~--~-~~---~~~~~l------------~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 150 (400)
.++.+.|++++|.+.|+++.. | +. ..+..+ ...+.+.|++++|+..|+++.+. .+.+...
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 179 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--CVWDAEL 179 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHH
Confidence 999999999999999999863 3 33 555555 44589999999999999999832 2346778
Q ss_pred HHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CC-cccHHHH-----
Q 048364 151 IGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--RN-VISWTAL----- 222 (400)
Q Consensus 151 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l----- 222 (400)
+..+..++.+.|+++. |...+..+.+.. +.+..++..++.+|...|++++|...|+++.+ |+ ...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~--A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 180 RELRAECFIKEGEPRK--AISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHTTCGGG--GHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHH--HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 9999999999999999 999999988764 34678899999999999999999999999875 33 3344444
Q ss_pred -------HHHHHhCCChhhHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhH
Q 048364 223 -------ICGSAHRGYSEDALSLFEMMQATGVKPN-----EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHY 290 (400)
Q Consensus 223 -------~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (400)
...+...|++++|...|+++.+. .|+ ...+..+..++.+.|++++|...++.+.+. .+.+...|
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~ 332 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHH
Confidence 78899999999999999999885 344 347888899999999999999999999853 24467899
Q ss_pred HHHHHHHHhcCChHHHHHHHHhc-cCCcc-HHHHHHHHHH------------HHhcC-----CHHHHHHHHHH-HHHcCC
Q 048364 291 GCMVDLFGKAGFLEEAYEVIRTM-RLEPN-VIIWGSFLAA------------CKEHK-----QFDMAERVIKQ-ALRMVK 350 (400)
Q Consensus 291 ~~l~~~~~~~g~~~~a~~~~~~~-~~~p~-~~~~~~l~~~------------~~~~~-----~~~~a~~~~~~-~~~~~~ 350 (400)
..+..+|...|++++|...++++ ...|+ ...+..+..+ |...| +.+++.+.+++ ..+..
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~- 411 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH- 411 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSC-
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhC-
Confidence 99999999999999999999998 66674 4455555533 33334 56777888886 45444
Q ss_pred CCCC---------chHHHHHHHHhhcccchHH
Q 048364 351 PEND---------GGVFTLICDLYTMNEKWEG 373 (400)
Q Consensus 351 ~~~~---------~~~~~~l~~~~~~~g~~~~ 373 (400)
|... ...+..+..+|...|+.+.
T Consensus 412 pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 412 PDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp GGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 4211 1255556666666555544
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.9e-23 Score=191.56 Aligned_cols=348 Identities=11% Similarity=-0.030 Sum_probs=285.3
Q ss_pred HhhHHHHhCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCC
Q 048364 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERN 80 (400)
Q Consensus 2 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~ 80 (400)
+.|+.+...+ |+..+|..+..++.+.|++++|.+.++.+++..+. +...+..+..++ ..|++++|...|+++...+
T Consensus 27 ~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 103 (514)
T 2gw1_A 27 KYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASANEGLGKFADAMFDLSVLSLNG 103 (514)
T ss_dssp HHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4566676654 79999999999999999999999999999997643 566888888889 9999999999998764211
Q ss_pred --------------------------------------------------------------------------------
Q 048364 81 -------------------------------------------------------------------------------- 80 (400)
Q Consensus 81 -------------------------------------------------------------------------------- 80 (400)
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (514)
T 2gw1_A 104 DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDES 183 (514)
T ss_dssp SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSS
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCC
Confidence
Q ss_pred --hhhHHHHHHHHH---cCCChHHHHHHHhhCCC----------------C-ChhhHHHHHHHHHhcCCcchHHHHHHHH
Q 048364 81 --AVTWNTMIKGYS---KSGNVCEARDFFERMPL----------------R-NVASWSAMIAAYLNAGAYDPGLKLFREM 138 (400)
Q Consensus 81 --~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~----------------~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 138 (400)
...+......+. +.|++++|+..|+++.. | +..++..+...+...|++++|...|+++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 263 (514)
T 2gw1_A 184 NEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKA 263 (514)
T ss_dssp CHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 222223333333 38999999999988654 2 3467888999999999999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CC
Q 048364 139 ISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RN 215 (400)
Q Consensus 139 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~ 215 (400)
.+. .|+...+..+..++...|+++. |...++.+.+... .+..++..+..+|...|++++|...|++..+ .+
T Consensus 264 l~~---~~~~~~~~~l~~~~~~~~~~~~--A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 337 (514)
T 2gw1_A 264 IEL---FPRVNSYIYMALIMADRNDSTE--YYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN 337 (514)
T ss_dssp HHH---CCCHHHHHHHHHHHHTSSCCTT--GGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC
T ss_pred Hhh---CccHHHHHHHHHHHHHCCCHHH--HHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh
Confidence 832 3557788899999999999999 9999999887653 3567888999999999999999999998864 35
Q ss_pred cccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC----hhhHH
Q 048364 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR----IQHYG 291 (400)
Q Consensus 216 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 291 (400)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+...-.++ ...+.
T Consensus 338 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 416 (514)
T 2gw1_A 338 IFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLV 416 (514)
T ss_dssp SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHH
Confidence 6788889999999999999999999998763 335678888999999999999999999998854322222 33888
Q ss_pred HHHHHHHh---cCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHH
Q 048364 292 CMVDLFGK---AGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361 (400)
Q Consensus 292 ~l~~~~~~---~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 361 (400)
.+..++.. .|++++|.+.++++ ...| +..++..+...|...|++++|...++++.+.. | .+...+..+
T Consensus 417 ~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~-~~~~~~~~~ 489 (514)
T 2gw1_A 417 GKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA-R-TMEEKLQAI 489 (514)
T ss_dssp HHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-S-SHHHHHHHH
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc-c-ccHHHHHHH
Confidence 99999999 99999999999998 4445 56788899999999999999999999999999 7 566665544
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=1.2e-22 Score=188.56 Aligned_cols=357 Identities=9% Similarity=-0.020 Sum_probs=281.7
Q ss_pred chhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC---CChhhHHHHHHHH
Q 048364 16 SFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE---RNAVTWNTMIKGY 91 (400)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 91 (400)
...+..+...+.+.|++++|.+.|+.+++..+. +...+..+..++ ..|++++|+..|+++.+ .+..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 456777888888899999999999999887543 667788888888 99999999999988763 3567788888899
Q ss_pred HcCCChHHHHHHHhhCC-CCChh---------------------------------------------------------
Q 048364 92 SKSGNVCEARDFFERMP-LRNVA--------------------------------------------------------- 113 (400)
Q Consensus 92 ~~~~~~~~a~~~~~~~~-~~~~~--------------------------------------------------------- 113 (400)
...|++++|++.|+.+. .|+..
T Consensus 104 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 99999999998886442 11100
Q ss_pred ------------hHHHHHHHHH--------hcCCcchHHHHHHHHHhcCCCCCC--------HHHHHHHHHHhhcccchh
Q 048364 114 ------------SWSAMIAAYL--------NAGAYDPGLKLFREMISNEGLTPD--------QMTIGAVLSGCSHLGSVG 165 (400)
Q Consensus 114 ------------~~~~l~~~~~--------~~g~~~~a~~~~~~m~~~~~~~p~--------~~~~~~ll~~~~~~~~~~ 165 (400)
....+...+. ..|++++|..+|+++. ...|+ ..++..+...+...|+++
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l---~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLL---SANTVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHH---C--CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---HHCCCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 1111111111 1247899999999998 33454 234666777888899999
Q ss_pred hhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHH
Q 048364 166 LLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMM 242 (400)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 242 (400)
. |...+..+.+... +...+..+...|...|++++|...|+++.+ .+..++..+...+...|++++|...++++
T Consensus 261 ~--A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 261 D--AQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp H--HHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred H--HHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9 9999999888754 477888899999999999999999998875 35678889999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc----
Q 048364 243 QATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP---- 317 (400)
Q Consensus 243 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p---- 317 (400)
.+.. +.+...+..+..++...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.|+++ ...|
T Consensus 337 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 337 QSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 8864 225678888999999999999999999999864 3445678899999999999999999999987 2112
Q ss_pred ---cHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 318 ---NVIIWGSFLAACKEH----------KQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 318 ---~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
....+......+... |++++|...++++.+.. | .+..++..++.+|...|++++|.+.+++..+.
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-P-RSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 222344556677777 99999999999999998 8 88899999999999999999999999998764
Q ss_pred c
Q 048364 385 N 385 (400)
Q Consensus 385 ~ 385 (400)
.
T Consensus 492 ~ 492 (537)
T 3fp2_A 492 A 492 (537)
T ss_dssp C
T ss_pred C
Confidence 3
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=2.3e-20 Score=163.68 Aligned_cols=268 Identities=12% Similarity=0.052 Sum_probs=119.1
Q ss_pred hHHHHHHHHHcCCChHHHHHHHhhCC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCC---CH-HHHHHHH
Q 048364 83 TWNTMIKGYSKSGNVCEARDFFERMP---LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP---DQ-MTIGAVL 155 (400)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p---~~-~~~~~ll 155 (400)
++..+...+...|++++|+..|+++. +.+...|..+..++...|++++|...|+++. ...| +. ..+..+.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~~~~~~~l~ 115 (359)
T 3ieg_A 39 AYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVL---KSNPSEQEEKEAESQLV 115 (359)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCcccChHHHHHHHH
Confidence 34444444444455555555544433 2244555566666666666666666666665 2234 21 1111111
Q ss_pred HHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCCh
Q 048364 156 SGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYS 232 (400)
Q Consensus 156 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 232 (400)
... ....+..+...+...|++++|...++++.+ .+...+..+...+...|++
T Consensus 116 ~~~-------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (359)
T 3ieg_A 116 KAD-------------------------EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEP 170 (359)
T ss_dssp HHH-------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHH-------------------------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCH
Confidence 000 000111223344444555555555544432 1233444444445555555
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHH------------HHHHHHHhc
Q 048364 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYG------------CMVDLFGKA 300 (400)
Q Consensus 233 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~ 300 (400)
++|...++++.... +.+..++..+...+...|++++|...++.+.+.. +.+...+. .+...+.+.
T Consensus 171 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 247 (359)
T 3ieg_A 171 RKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRD 247 (359)
T ss_dssp HHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55555555544432 2233444444445555555555555555444321 11111111 113344555
Q ss_pred CChHHHHHHHHhc-cCCccH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHH
Q 048364 301 GFLEEAYEVIRTM-RLEPNV-----IIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGA 374 (400)
Q Consensus 301 g~~~~a~~~~~~~-~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 374 (400)
|++++|...+++. ...|+. ..+..+..++...|++++|...++++.+.. | .++.++..++.+|...|++++|
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~g~~~~A 325 (359)
T 3ieg_A 248 GRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-P-DNVNALKDRAEAYLIEEMYDEA 325 (359)
T ss_dssp TCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-c-ccHHHHHHHHHHHHHcCCHHHH
Confidence 5555555555544 222221 122334444555555555555555555544 4 4455555555555555555555
Q ss_pred HHHHHHHhc
Q 048364 375 ERVRKLMLN 383 (400)
Q Consensus 375 ~~~~~~m~~ 383 (400)
.+.+++..+
T Consensus 326 ~~~~~~a~~ 334 (359)
T 3ieg_A 326 IQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 555555443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=1.7e-20 Score=164.53 Aligned_cols=259 Identities=12% Similarity=0.061 Sum_probs=182.8
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHhhCC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Q 048364 82 VTWNTMIKGYSKSGNVCEARDFFERMP---LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGC 158 (400)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~ 158 (400)
..+..+...+...|++++|++.|+++. +.+..++..+..++...|++++|...|+++.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~------------------- 64 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI------------------- 64 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH-------------------
Confidence 344455555555666666666655543 2244555555566666666666666666555
Q ss_pred hcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCc------ccH------------H
Q 048364 159 SHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNV------ISW------------T 220 (400)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~------------~ 220 (400)
+.. +.+...+..+..+|...|++++|...|++..+.++ ..+ .
T Consensus 65 -------------------~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 124 (359)
T 3ieg_A 65 -------------------ALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLR 124 (359)
T ss_dssp -------------------HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------HhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHH
Confidence 322 11233444555555555555555555555544221 122 2
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhc
Q 048364 221 ALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA 300 (400)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 300 (400)
.+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++.+.+ ..+.+...+..+...|...
T Consensus 125 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~ 201 (359)
T 3ieg_A 125 SQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASK--LKSDNTEAFYKISTLYYQL 201 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 23678899999999999999998863 34678889999999999999999999999985 3345778899999999999
Q ss_pred CChHHHHHHHHhc-cCCcc-HHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc----hHHHHHH
Q 048364 301 GFLEEAYEVIRTM-RLEPN-VIIWG------------SFLAACKEHKQFDMAERVIKQALRMVKPENDG----GVFTLIC 362 (400)
Q Consensus 301 g~~~~a~~~~~~~-~~~p~-~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~ 362 (400)
|++++|.+.+++. ...|+ ...+. .+...+.+.|++++|...++++.+.. | .++ ..+..++
T Consensus 202 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~-~~~~~~~~~~~~la 279 (359)
T 3ieg_A 202 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-P-SVAEYTVRSKERIC 279 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C-SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C-CchHHHHHHHHHHH
Confidence 9999999999998 44443 22222 23667899999999999999999998 7 454 3455688
Q ss_pred HHhhcccchHHHHHHHHHHhcc
Q 048364 363 DLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 363 ~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
.++...|++++|...+++..+.
T Consensus 280 ~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 280 HCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999874
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=2.7e-20 Score=172.68 Aligned_cols=345 Identities=11% Similarity=0.020 Sum_probs=270.3
Q ss_pred HhhHHHHhCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCC-CC
Q 048364 2 QLFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELP-ER 79 (400)
Q Consensus 2 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~-~~ 79 (400)
+.|+...+.. +.+..++..+..++.+.|++++|.+.++++++..+. +...+..+...+ ..|++++|...|+.+. .|
T Consensus 46 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 123 (537)
T 3fp2_A 46 KYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASANESLGNFTDAMFDLSVLSLNG 123 (537)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHC---
T ss_pred HHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Confidence 3556665544 457888999999999999999999999999997643 566788888888 9999999999986442 11
Q ss_pred Chh---------------------------------------------------------------------hHHHHHHH
Q 048364 80 NAV---------------------------------------------------------------------TWNTMIKG 90 (400)
Q Consensus 80 ~~~---------------------------------------------------------------------~~~~l~~~ 90 (400)
+.. ....+...
T Consensus 124 ~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 203 (537)
T 3fp2_A 124 DFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRL 203 (537)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHH
Confidence 100 11111111
Q ss_pred HHc--------CCChHHHHHHHhhCCC--CC--------hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHH
Q 048364 91 YSK--------SGNVCEARDFFERMPL--RN--------VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIG 152 (400)
Q Consensus 91 ~~~--------~~~~~~a~~~~~~~~~--~~--------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 152 (400)
+.. .|++++|+.+|+++.. |+ ..++..+...+...|++++|.+.|+++. ...|+...+.
T Consensus 204 ~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~~ 280 (537)
T 3fp2_A 204 YSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI---NLHPTPNSYI 280 (537)
T ss_dssp HTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCCCHHHHH
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---hcCCCchHHH
Confidence 111 2478899999988763 32 2357777788999999999999999998 3467778899
Q ss_pred HHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhC
Q 048364 153 AVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHR 229 (400)
Q Consensus 153 ~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 229 (400)
.+...+...|+++. |...+..+.+... .+..++..+..+|...|++++|...|++..+ .+...+..+...+...
T Consensus 281 ~l~~~~~~~~~~~~--A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 357 (537)
T 3fp2_A 281 FLALTLADKENSQE--FFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ 357 (537)
T ss_dssp HHHHHTCCSSCCHH--HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHH--HHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 99999999999999 9999999887753 3577899999999999999999999998875 3567888999999999
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC----hhhHHHHHHHHHhc-----
Q 048364 230 GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR----IQHYGCMVDLFGKA----- 300 (400)
Q Consensus 230 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~----- 300 (400)
|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.....++ ...+..+..++...
T Consensus 358 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 436 (537)
T 3fp2_A 358 GKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDP 436 (537)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999998863 335678888999999999999999999998753211111 12244556777787
Q ss_pred -----CChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchH
Q 048364 301 -----GFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357 (400)
Q Consensus 301 -----g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 357 (400)
|++++|...|++. ...| +...+..+..+|...|++++|...++++.+.. | .+...
T Consensus 437 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~-~~~~~ 498 (537)
T 3fp2_A 437 TQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA-R-TMDEK 498 (537)
T ss_dssp --CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CHHH
T ss_pred hhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-C-CcHHH
Confidence 9999999999998 4445 56789999999999999999999999999998 7 44443
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=1.6e-19 Score=156.46 Aligned_cols=184 Identities=13% Similarity=0.032 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 261 (400)
...+..+..+|...|++++|...|++..+ | +...+..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 125 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 203 (330)
T 3hym_B 125 GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVA 203 (330)
T ss_dssp THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 34455666677777777777777776654 2 34556667777778888888888888777653 33567777788888
Q ss_pred HhcCChhhHHHHHHHhhhhcC-------CCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhc
Q 048364 262 VHTGLVDEGRKYFKMIDEEYD-------LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEH 332 (400)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 332 (400)
...|++++|...++.+.+... .+....++..+..+|...|++++|...+++. ...| +...+..+..++...
T Consensus 204 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 283 (330)
T 3hym_B 204 FQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLM 283 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHh
Confidence 888888888888877764321 1334567888888888888888888888887 3334 556788888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHh-hcccch
Q 048364 333 KQFDMAERVIKQALRMVKPENDGGVFTLICDLY-TMNEKW 371 (400)
Q Consensus 333 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~ 371 (400)
|++++|...++++.+.. | .++.++..+..++ ...|+.
T Consensus 284 g~~~~A~~~~~~al~~~-p-~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 284 GNFENAVDYFHTALGLR-R-DDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp TCHHHHHHHHHTTTTTC-S-CCHHHHHHHHHHHHTTTTC-
T ss_pred ccHHHHHHHHHHHHccC-C-CchHHHHHHHHHHHHHhCch
Confidence 89999998888888887 7 7788888888877 455554
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=9.8e-19 Score=151.54 Aligned_cols=264 Identities=11% Similarity=-0.004 Sum_probs=205.4
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHH
Q 048364 111 NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATI 190 (400)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (400)
+...+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|+++. +...+..+.+.. +.+...+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~--A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANE--LFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHH--HHHHHHHHHHHC-TTSTHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHH--HHHHHHHHHHhC-cCCHHHHHH
Confidence 44445555555555666666666666655221 1222344445555556666666 555555555543 224567778
Q ss_pred HHHHHHhcC-CHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048364 191 LVDMYAKCG-FLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266 (400)
Q Consensus 191 l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 266 (400)
+...+...| ++++|...|++..+ .+...|..+...+...|++++|...++++.+... .+...+..+...+...|+
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhh
Confidence 888899999 99999999998875 3466889999999999999999999999988642 245667779999999999
Q ss_pred hhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cC----------CccHHHHHHHHHHHHhcCCH
Q 048364 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RL----------EPNVIIWGSFLAACKEHKQF 335 (400)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~----------~p~~~~~~~l~~~~~~~~~~ 335 (400)
+++|...++.+.+ ..+.+...+..+...+...|++++|...+++. .. ..+..++..+..++...|++
T Consensus 175 ~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 175 SKLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999985 33456788999999999999999999999987 21 33456889999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 336 DMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 336 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
++|...++++.+.. | .+..++..++.+|...|++++|.+.+++..+.
T Consensus 253 ~~A~~~~~~a~~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 253 AEALDYHRQALVLI-P-QNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHHHS-T-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHhhC-c-cchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 99999999999998 8 78999999999999999999999999988764
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=2.2e-19 Score=158.23 Aligned_cols=280 Identities=11% Similarity=-0.000 Sum_probs=195.4
Q ss_pred CCChHHHHH-HHhhCCC--C-----ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchh
Q 048364 94 SGNVCEARD-FFERMPL--R-----NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVG 165 (400)
Q Consensus 94 ~~~~~~a~~-~~~~~~~--~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~ 165 (400)
.|++++|++ .|++... | +...+..+...+.+.|++++|+..|+++.+. .+.+..++..+..++...|+++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHH
Confidence 355555555 5554321 1 2334555556666666666666666666521 1223445555556666666666
Q ss_pred hhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CC-cccHHH---------------HHHHHH
Q 048364 166 LLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--RN-VISWTA---------------LICGSA 227 (400)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~---------------l~~~~~ 227 (400)
. |...++.+.+.. +.+..++..+..+|...|++++|.+.|+++.+ |+ ...+.. .+..+.
T Consensus 116 ~--A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 116 L--AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp H--HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred H--HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 6 666666555543 22455667777777777788888777777654 21 111110 233334
Q ss_pred hCCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHH
Q 048364 228 HRGYSEDALSLFEMMQATGVKP-NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306 (400)
Q Consensus 228 ~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 306 (400)
..|++++|...++++.+..... +..++..+...+...|++++|...++.+.+. .+.+...+..+..+|...|++++|
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 8899999999999998863221 4788999999999999999999999999853 244578899999999999999999
Q ss_pred HHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC-----------chHHHHHHHHhhcccchHH
Q 048364 307 YEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND-----------GGVFTLICDLYTMNEKWEG 373 (400)
Q Consensus 307 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~ 373 (400)
...|+++ ...| +...+..+..+|.+.|++++|...++++.+.. | .+ ..++..++.+|...|++++
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-R-KSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-H-TC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C-CCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 9999998 4445 57789999999999999999999999999987 6 44 7899999999999999999
Q ss_pred HHHHHHHHh
Q 048364 374 AERVRKLML 382 (400)
Q Consensus 374 a~~~~~~m~ 382 (400)
|..++++..
T Consensus 349 A~~~~~~~l 357 (368)
T 1fch_A 349 YGAADARDL 357 (368)
T ss_dssp HHHHHTTCH
T ss_pred HHHhHHHHH
Confidence 998877443
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.85 E-value=2.7e-17 Score=150.62 Aligned_cols=349 Identities=12% Similarity=0.025 Sum_probs=289.0
Q ss_pred CchhHHHHHHHhcc----cchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-H----hCCHHHHHHHHhhCCCC-ChhhH
Q 048364 15 DSFSILHILKSCTH----FNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-V----VTSFGFARKLFDELPER-NAVTW 84 (400)
Q Consensus 15 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~----~g~~~~a~~~~~~~~~~-~~~~~ 84 (400)
+..++..+-..+.. .+++++|.+.|++..+.| +...+..+...| . .+++++|...|++..+. +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 66777777777776 789999999999998865 455666777777 7 88999999999988754 66778
Q ss_pred HHHHHHHHc----CCChHHHHHHHhhCCC-CChhhHHHHHHHHHh----cCCcchHHHHHHHHHhcCCCCCCHHHHHHHH
Q 048364 85 NTMIKGYSK----SGNVCEARDFFERMPL-RNVASWSAMIAAYLN----AGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155 (400)
Q Consensus 85 ~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll 155 (400)
..+...|.. .+++++|++.|++... .+..++..|...|.. .+++++|++.|++.. ..+ +...+..+.
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~-~~~---~~~a~~~Lg 190 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAA-EQG---NVWSCNQLG 190 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HCC---CHHHHHHHH
Confidence 888888888 8899999999998764 367788889988987 789999999999998 433 567777777
Q ss_pred HHhhc----ccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHh----cCCHHHHHHHHHhccC-CCcccHHHHHHHH
Q 048364 156 SGCSH----LGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK----CGFLKYALMVFELMEE-RNVISWTALICGS 226 (400)
Q Consensus 156 ~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~ 226 (400)
..+.. .++.+. |...+....+.+ +...+..+...|.. .+++++|..+|++..+ .+...+..+...|
T Consensus 191 ~~y~~g~g~~~~~~~--A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y 265 (490)
T 2xm6_A 191 YMYSRGLGVERNDAI--SAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYIL 265 (490)
T ss_dssp HHHHHTSSSCCCHHH--HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhcCCCCCcCHHH--HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77777 788888 999999888876 45677788888886 8899999999998876 4566777788888
Q ss_pred Hh----CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CChhhHHHHHHHhhhhcCCCCChhhHHHHHHHH
Q 048364 227 AH----RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT-----GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297 (400)
Q Consensus 227 ~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (400)
.. .+++++|+..|++..+.| +...+..+...+... +++++|...|++..+. .+...+..+...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y 338 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIY 338 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHH
Confidence 87 899999999999998765 456677777888777 8999999999999853 3556778888888
Q ss_pred HhcC---ChHHHHHHHHhccCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhc---
Q 048364 298 GKAG---FLEEAYEVIRTMRLEPNVIIWGSFLAACKE----HKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM--- 367 (400)
Q Consensus 298 ~~~g---~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 367 (400)
...| ++++|.+.|++.--..+...+..+...|.. .+++++|...+++..+.+ ++..+..|..+|..
T Consensus 339 ~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~----~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 339 FRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG----LSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSS
T ss_pred HhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHcCCC
Confidence 8766 789999999988222567788888888988 899999999999999876 46788899999988
Q ss_pred -ccchHHHHHHHHHHhcccc
Q 048364 368 -NEKWEGAERVRKLMLNQNV 386 (400)
Q Consensus 368 -~g~~~~a~~~~~~m~~~~~ 386 (400)
.+++++|...|++..+.+.
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999998774
No 19
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=4.5e-18 Score=144.27 Aligned_cols=268 Identities=7% Similarity=-0.012 Sum_probs=182.0
Q ss_pred HhCCHHHHHHHHhhCCCCCh----hhHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHH
Q 048364 62 VVTSFGFARKLFDELPERNA----VTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFRE 137 (400)
Q Consensus 62 ~~g~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 137 (400)
..|++..|+..++.....++ .....+..+|...|+++.|+..++....|+..++..+...+...|+.++|++.+++
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ 90 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDR 90 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 45555555555554443221 12233445555555555555555444333444555555555555555555555555
Q ss_pred HHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcc
Q 048364 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVI 217 (400)
Q Consensus 138 m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 217 (400)
+. ..+..|+ +...+..+..+|...|++++|.+.+++ ..+..
T Consensus 91 ll-~~~~~P~------------------------------------~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~ 131 (291)
T 3mkr_A 91 EM-SRSVDVT------------------------------------NTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLE 131 (291)
T ss_dssp HH-HSCCCCS------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHH
T ss_pred HH-hcccCCC------------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHH
Confidence 54 2233333 344556677788889999999999988 45677
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHH
Q 048364 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTF---TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294 (400)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 294 (400)
.+..++..+.+.|++++|...|+++.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+.
T Consensus 132 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la 207 (291)
T 3mkr_A 132 CMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQA 207 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 88888999999999999999999998863 553211 12233344558999999999999964 456788899999
Q ss_pred HHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCCCchHHHHHHHHhhcccch
Q 048364 295 DLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDM-AERVIKQALRMVKPENDGGVFTLICDLYTMNEKW 371 (400)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 371 (400)
.++.+.|++++|...|++. ...| +..++..++..+...|+.++ +.++++++++.. | .++.+. ....+.+.+
T Consensus 208 ~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~-P-~~~~~~----d~~~~~~~f 281 (291)
T 3mkr_A 208 ACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH-R-SHPFIK----EYRAKENDF 281 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-T-TCHHHH----HHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-C-CChHHH----HHHHHHHHH
Confidence 9999999999999999997 5455 66788899999999999876 578999999999 8 665443 345566666
Q ss_pred HHHHHHH
Q 048364 372 EGAERVR 378 (400)
Q Consensus 372 ~~a~~~~ 378 (400)
+++..-|
T Consensus 282 d~~~~~~ 288 (291)
T 3mkr_A 282 DRLVLQY 288 (291)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 6665443
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=6.8e-20 Score=159.09 Aligned_cols=283 Identities=13% Similarity=0.145 Sum_probs=125.7
Q ss_pred HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 048364 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISN 141 (400)
Q Consensus 62 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 141 (400)
+.|++++|.+.++++..| .+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++..+ +
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar-k 89 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMAR-K 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-H
Confidence 778888899999888555 48889999999999999999999664 577788888888889999999999777766 3
Q ss_pred CCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHH
Q 048364 142 EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTA 221 (400)
Q Consensus 142 ~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 221 (400)
..+++.+.+.++.+|.+.|++++ +..+++ .|+..+|..++..|...|++++|...|..+ ..|..
T Consensus 90 --~~~~~~i~~~Li~~Y~Klg~l~e--~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~ 153 (449)
T 1b89_A 90 --KARESYVETELIFALAKTNRLAE--LEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGR 153 (449)
T ss_dssp ---------------------CHHH--HTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHH
T ss_pred --hCccchhHHHHHHHHHHhCCHHH--HHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHH
Confidence 24557778888999999999888 777775 366678889999999999999999999877 48889
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcC
Q 048364 222 LICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301 (400)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 301 (400)
++.++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|......+. ..+.....++..|.+.|
T Consensus 154 LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~------~~ad~l~~lv~~Yek~G 221 (449)
T 1b89_A 154 LASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRG 221 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT------TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH------hCHhhHHHHHHHHHHCC
Confidence 999999999999999999887 277889999999999999999855444322 23333556888899999
Q ss_pred ChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCC-----CCchHHHHHHHHhhcccchHH
Q 048364 302 FLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALR-MVKPE-----NDGGVFTLICDLYTMNEKWEG 373 (400)
Q Consensus 302 ~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~-----~~~~~~~~l~~~~~~~g~~~~ 373 (400)
++++|..+++.. +..+ -...|+.+.-+|++- ++++..+.++...+ .++|+ .+...|..++..|...++++.
T Consensus 222 ~~eEai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 222 YFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp CHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 999999888877 5554 345667676666654 34444444443322 22242 356788888888888899988
Q ss_pred HHHHH
Q 048364 374 AERVR 378 (400)
Q Consensus 374 a~~~~ 378 (400)
|...+
T Consensus 301 A~~tm 305 (449)
T 1b89_A 301 AIITM 305 (449)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87643
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=6.4e-19 Score=155.18 Aligned_cols=260 Identities=10% Similarity=-0.022 Sum_probs=187.3
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHH
Q 048364 113 ASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILV 192 (400)
Q Consensus 113 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 192 (400)
..|..+...+.+.|++++|+++|+++.+.. +.+..++..+..++...|+++. |...++.+.+.. +.+..++..+.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~--A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQA--AIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHH--HHHHHHHHHhcC-CCCHHHHHHHH
Confidence 345555555555566666666665555211 2234455555555555566555 555555555543 22456677778
Q ss_pred HHHHhcCCHHHHHHHHHhccC--C-C----------cccHHHHHHHHHhCCChhhHHHHHHHHHHCCCC-CCHHHHHHHH
Q 048364 193 DMYAKCGFLKYALMVFELMEE--R-N----------VISWTALICGSAHRGYSEDALSLFEMMQATGVK-PNEMTFTGVL 258 (400)
Q Consensus 193 ~~~~~~g~~~~A~~~~~~~~~--~-~----------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~ 258 (400)
.+|...|++++|...|+++.+ | + ...+..+...+...|++++|...++++.+.... ++..++..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 888888888888888887764 1 1 223344578899999999999999999886422 2578899999
Q ss_pred HHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHH
Q 048364 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFD 336 (400)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 336 (400)
..+...|++++|...++++.+. .+.+..++..+..+|...|++++|...|++. ...| +..++..+..+|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999853 3446788999999999999999999999998 5555 4778999999999999999
Q ss_pred HHHHHHHHHHHcCCCCC-----------CchHHHHHHHHhhcccchHHHHHHHHH
Q 048364 337 MAERVIKQALRMVKPEN-----------DGGVFTLICDLYTMNEKWEGAERVRKL 380 (400)
Q Consensus 337 ~a~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 380 (400)
+|...++++++.. |.. +..++..+..++...|+.+.+..+.++
T Consensus 299 ~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQ-RKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHH-HCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-cccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999877 521 368899999999999999998887765
No 22
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=1.2e-17 Score=152.44 Aligned_cols=364 Identities=12% Similarity=-0.011 Sum_probs=220.3
Q ss_pred CCCchhHHHHHHHhcccchhHHHHHHHHHHHHh-----C--ccc-chhhhhHHHHHH-HhCCHHHHHHHHhhCCC-----
Q 048364 13 PSDSFSILHILKSCTHFNNLTVIHHLHSHILKL-----G--FIS-HVYVATSLLHEY-VVTSFGFARKLFDELPE----- 78 (400)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~-~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~----- 78 (400)
......|+.|...+...|++++|++.|++.++. + ..| ...+|+.+..+| ..|++++|...+++..+
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 334566888888888899999999999887653 1 122 235677888888 89999998888876542
Q ss_pred --C----ChhhHHHHHHHHHc--CCChHHHHHHHhhCC--CC-ChhhHHHHHHH---HHhcCCcchHHHHHHHHHhcCCC
Q 048364 79 --R----NAVTWNTMIKGYSK--SGNVCEARDFFERMP--LR-NVASWSAMIAA---YLNAGAYDPGLKLFREMISNEGL 144 (400)
Q Consensus 79 --~----~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~--~~-~~~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~~~~ 144 (400)
+ ...++.....++.+ .+++++|++.|++.. .| ++..+..+..+ +...++.++|++.+++..+ +
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~---l 204 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR---L 204 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH---H
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh---c
Confidence 1 23455555555544 456889999998865 33 45555555444 3456778888888888772 2
Q ss_pred CCC-HHHHHHHHHHhh----cccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-Cc
Q 048364 145 TPD-QMTIGAVLSGCS----HLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--R-NV 216 (400)
Q Consensus 145 ~p~-~~~~~~ll~~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~ 216 (400)
.|+ ..++..+...+. ..++.+. +...++...... +.+..++..+...|...|++++|...|++..+ | +.
T Consensus 205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~--a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 281 (472)
T 4g1t_A 205 NPDNQYLKVLLALKLHKMREEGEEEGE--GEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNA 281 (472)
T ss_dssp CSSCHHHHHHHHHHHHHCC------CH--HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChH
Confidence 343 344444443333 3456666 777777776654 33566777888888999999999998888775 3 33
Q ss_pred ccHHHHHHHHHhC-------------------CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHh
Q 048364 217 ISWTALICGSAHR-------------------GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMI 277 (400)
Q Consensus 217 ~~~~~l~~~~~~~-------------------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 277 (400)
.++..+...|... +..+.|...+++..... +.+..++..+...+...|++++|...|++.
T Consensus 282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 4555555444321 23456777777766643 224456777788888888888888888887
Q ss_pred hhhcCCCCCh--hhHHHHHH-HHHhcCChHHHHHHHHhc-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048364 278 DEEYDLEPRI--QHYGCMVD-LFGKAGFLEEAYEVIRTM-RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN 353 (400)
Q Consensus 278 ~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 353 (400)
.+. ...+.. ..+..+.. .+...|++++|+..|++. .+.|+...... ....+..++++.++.+ | .
T Consensus 361 L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~-p-~ 428 (472)
T 4g1t_A 361 FSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKN-G-A 428 (472)
T ss_dssp HHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHC-C--
T ss_pred Hhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhC-C-C
Confidence 742 222211 12222322 234678888888888877 56665433222 2344556677777777 8 8
Q ss_pred CchHHHHHHHHhhcccchHHHHHHHHHHhccccccccCcccc
Q 048364 354 DGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARGSSVI 395 (400)
Q Consensus 354 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 395 (400)
++.++..++.+|...|++++|++.|++..+.+-......+|+
T Consensus 429 ~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 429 DSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 899999999999999999999999999998776555566665
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=3.8e-16 Score=144.47 Aligned_cols=361 Identities=9% Similarity=0.010 Sum_probs=223.8
Q ss_pred CCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC--CChhhHHHHHH
Q 048364 13 PSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE--RNAVTWNTMIK 89 (400)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~--~~~~~~~~l~~ 89 (400)
|-|...|..++.. .+.|+++.|..+|+++++.-+ .+...|..++..+ +.|++++|..+|++... |+...|...+.
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P-~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~ 87 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFP-SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS 87 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 4467788888884 678999999999999988532 2566788888888 99999999999999875 66667776665
Q ss_pred HH-HcCCChHHHHH----HHhhCC------CCChhhHHHHHHHHHh---------cCCcchHHHHHHHHHhcCCCCCCHH
Q 048364 90 GY-SKSGNVCEARD----FFERMP------LRNVASWSAMIAAYLN---------AGAYDPGLKLFREMISNEGLTPDQM 149 (400)
Q Consensus 90 ~~-~~~~~~~~a~~----~~~~~~------~~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~ 149 (400)
.. ...|+.++|.+ +|++.. .++...|...+....+ .|++++|..+|++.+ .....+...
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al-~~P~~~~~~ 166 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC-VNPMINIEQ 166 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT-TSCCTTHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH-hchhhhHHH
Confidence 33 34577766654 565532 2345677777765544 678888888888887 321111112
Q ss_pred HHHHHHHHh-------------hcccchhhh-------------------------------------------------
Q 048364 150 TIGAVLSGC-------------SHLGSVGLL------------------------------------------------- 167 (400)
Q Consensus 150 ~~~~ll~~~-------------~~~~~~~~~------------------------------------------------- 167 (400)
.|....... ...+++..+
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 222211100 011111110
Q ss_pred ---------hhhhhhhHHHhccccchHHHHHHHHHHHHh-------cCCHH-------HHHHHHHhccC---C-CcccHH
Q 048364 168 ---------MGKSAHGFIVKNEWELNEQIATILVDMYAK-------CGFLK-------YALMVFELMEE---R-NVISWT 220 (400)
Q Consensus 168 ---------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~ 220 (400)
.+...++.+.... +.++.+|..++..+.+ .|+++ +|..+|++..+ | +...|.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 0111222222221 2234455555555554 57765 77777777653 3 345666
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHH-H
Q 048364 221 ALICGSAHRGYSEDALSLFEMMQATGVKPN-E-MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL-F 297 (400)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 297 (400)
.++..+.+.|++++|..+|+++.+. .|+ . ..|...+..+.+.|++++|.++|++..+. .+.+...|...+.. +
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEY 401 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHH
Confidence 7777777777777777777777764 343 2 36666777777777777777777777742 11222333222222 3
Q ss_pred HhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCch----HHHHHHHHhhcccch
Q 048364 298 GKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG----VFTLICDLYTMNEKW 371 (400)
Q Consensus 298 ~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~ 371 (400)
...|++++|..+|++. ...| +...|..++..+.+.|+.++|..+|++++... | .++. .|...+......|+.
T Consensus 402 ~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~-~-~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-S-LPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC-C-SCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc-C-CCHHHHHHHHHHHHHHHHHcCCH
Confidence 3577777777777766 3334 45667777777777777778888887777765 4 2332 566666666677777
Q ss_pred HHHHHHHHHHhc
Q 048364 372 EGAERVRKLMLN 383 (400)
Q Consensus 372 ~~a~~~~~~m~~ 383 (400)
+.+..+.+++.+
T Consensus 480 ~~~~~~~~r~~~ 491 (530)
T 2ooe_A 480 ASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776654
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=2.6e-18 Score=151.39 Aligned_cols=278 Identities=14% Similarity=0.014 Sum_probs=203.0
Q ss_pred CCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHH-HHHHHHhcCCCCC--CHHHHHHHHHHhhcccchhhhhhh
Q 048364 94 SGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLK-LFREMISNEGLTP--DQMTIGAVLSGCSHLGSVGLLMGK 170 (400)
Q Consensus 94 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~~~~~~~p--~~~~~~~ll~~~~~~~~~~~~~a~ 170 (400)
.+.++.+...|+.+...+.. ++...|++++|++ .|++......-.| +...+..+...+.+.|+++. |.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--A~ 84 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPN--AV 84 (368)
T ss_dssp ---------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHH--HH
T ss_pred cccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHH--HH
Confidence 34445555555555433322 3445689999998 8887652222222 34567888999999999999 99
Q ss_pred hhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCC
Q 048364 171 SAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGV 247 (400)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 247 (400)
..++.+.+.. +.+..++..+..+|...|++++|...|+++.+ .+..++..+...+...|++++|...++++.....
T Consensus 85 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 163 (368)
T 1fch_A 85 LLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163 (368)
T ss_dssp HHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 9999998875 34677889999999999999999999998875 3567889999999999999999999999988643
Q ss_pred CCCHHHHHH---------------HHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHh
Q 048364 248 KPNEMTFTG---------------VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312 (400)
Q Consensus 248 ~p~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 312 (400)
. +...+.. .+..+...|++++|...++.+.+.....++..++..+...|...|++++|...+++
T Consensus 164 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 242 (368)
T 1fch_A 164 A-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242 (368)
T ss_dssp T-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2 2222211 23334489999999999999986432222578899999999999999999999999
Q ss_pred c-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 313 M-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 313 ~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
+ ...| +...+..+...+...|++++|...++++++.. | .+..++..++.+|...|++++|...++++.+.
T Consensus 243 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 243 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-P-GYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8 4445 57789999999999999999999999999998 8 88999999999999999999999999998764
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=8.3e-19 Score=154.48 Aligned_cols=258 Identities=10% Similarity=-0.027 Sum_probs=197.8
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHhhCC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 048364 80 NAVTWNTMIKGYSKSGNVCEARDFFERMP---LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLS 156 (400)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~ 156 (400)
+...+..+...+.+.|++++|++.|+++. +.+..+|..+..+|.+.|++++|++.|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence 44557778888888888888888888765 3466788888888888888888888888887321 234667888888
Q ss_pred HhhcccchhhhhhhhhhhHHHhccccc---------hHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C---CcccHHHH
Q 048364 157 GCSHLGSVGLLMGKSAHGFIVKNEWEL---------NEQIATILVDMYAKCGFLKYALMVFELMEE--R---NVISWTAL 222 (400)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~l 222 (400)
++...|+++. |...++.+.+..... ...++..+...|...|++++|...|+++.+ | +..++..+
T Consensus 142 ~~~~~g~~~~--A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQD--ACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHH--HHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHH--HHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 8888888888 888888877654221 122334457889999999999999999875 3 46688899
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCC
Q 048364 223 ICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF 302 (400)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 302 (400)
...|...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+. .+.+..++..+..+|.+.|+
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCC
Confidence 999999999999999999998863 346788999999999999999999999999853 23457889999999999999
Q ss_pred hHHHHHHHHhc-cCCc-------------cHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048364 303 LEEAYEVIRTM-RLEP-------------NVIIWGSFLAACKEHKQFDMAERVIKQ 344 (400)
Q Consensus 303 ~~~a~~~~~~~-~~~p-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 344 (400)
+++|...|++. ...| +...|..+..++...|+.+.+....++
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999988 2222 256789999999999999988877665
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=5.7e-18 Score=147.10 Aligned_cols=277 Identities=12% Similarity=0.082 Sum_probs=106.4
Q ss_pred ccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChHHHHHHHhh
Q 048364 28 HFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFER 106 (400)
Q Consensus 28 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 106 (400)
+.|+.++|.++++++ +++.+|..+..++ +.|++++|++.|.+. +|..+|..++..+...|++++|++.++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 445677777777766 2234677777777 777777777777543 4555777777777777777777776655
Q ss_pred CC--CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccch
Q 048364 107 MP--LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELN 184 (400)
Q Consensus 107 ~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 184 (400)
.. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.++. |...+..+
T Consensus 87 ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yee--A~~~Y~~a-------- 148 (449)
T 1b89_A 87 ARKKARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDA--AKLLYNNV-------- 148 (449)
T ss_dssp ----------------------CHHHHTTTTT--------CC----------------CTTT--HHHHHHHT--------
T ss_pred HHHhCccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHH--HHHHHHHh--------
Confidence 54 2345667777777777777777666652 2555677777777777777777 77777644
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 264 (400)
..|..++.++.+.|++++|.+.+.++. ++.+|..++.+|...|+++.|...... +...+.-...++..|.+.
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~ 220 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDR 220 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHT
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHC
Confidence 356777777777777777777777773 667777777777777777777544332 222333344566777777
Q ss_pred CChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhc--CChHHHHHHHHhc-cCCc------cHHHHHHHHHHHHhcCCH
Q 048364 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA--GFLEEAYEVIRTM-RLEP------NVIIWGSFLAACKEHKQF 335 (400)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~-~~~p------~~~~~~~l~~~~~~~~~~ 335 (400)
|++++|..+++..... . +-....|+-+..+|++- ++..+.++.|..- +++| +...|..+...|.+.+++
T Consensus 221 G~~eEai~lLe~aL~l-e-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~ 298 (449)
T 1b89_A 221 GYFEELITMLEAALGL-E-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEY 298 (449)
T ss_dssp TCHHHHHHHHHHHTTS-T-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHhCC-c-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 7777777777776621 1 33455666666666643 3444555544433 4434 344677777777777777
Q ss_pred HHHHH
Q 048364 336 DMAER 340 (400)
Q Consensus 336 ~~a~~ 340 (400)
+.|..
T Consensus 299 d~A~~ 303 (449)
T 1b89_A 299 DNAII 303 (449)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=6.7e-18 Score=146.07 Aligned_cols=259 Identities=9% Similarity=-0.021 Sum_probs=181.1
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHH
Q 048364 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMY 195 (400)
Q Consensus 116 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (400)
..+...+...|++++|..+|+++.+.. +.+..++..+..++...|+++. |...++.+.+.. +.+..++..+..+|
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~--A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGL--AIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHH--HHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 334444444444444444444443110 1123334444444444444444 444444444332 22345566667777
Q ss_pred HhcCCHHHHHHHHHhccC--C-CcccHHHH--------------HH-HHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHH
Q 048364 196 AKCGFLKYALMVFELMEE--R-NVISWTAL--------------IC-GSAHRGYSEDALSLFEMMQATGVKPNEMTFTGV 257 (400)
Q Consensus 196 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 257 (400)
...|++++|.+.++++.+ | +...+..+ .. .+...|++++|...++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 777777777777777654 2 22223222 22 3777889999999999998864 3367889999
Q ss_pred HHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCH
Q 048364 258 LTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQF 335 (400)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 335 (400)
...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.++++ ...| +...+..+..++...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 99999999999999999999853 2446778999999999999999999999998 4444 577899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCC-----------CchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 336 DMAERVIKQALRMVKPEN-----------DGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 336 ~~a~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
++|...++++.+.. |.. +..++..+..++...|++++|..++++..+
T Consensus 257 ~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999988 721 688999999999999999999998876554
No 28
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=3.9e-16 Score=142.94 Aligned_cols=345 Identities=10% Similarity=-0.036 Sum_probs=273.7
Q ss_pred CchhHHHHHHHhcc----cchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-H----hCCHHHHHHHHhhCCCC-ChhhH
Q 048364 15 DSFSILHILKSCTH----FNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-V----VTSFGFARKLFDELPER-NAVTW 84 (400)
Q Consensus 15 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~----~g~~~~a~~~~~~~~~~-~~~~~ 84 (400)
+...+..|-..+.. .+++++|.+.|++..+.| +...+..+...| . .+++++|...|++..+. +...+
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 150 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQ 150 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 56677788888877 899999999999998865 455566677777 6 78999999999988754 66778
Q ss_pred HHHHHHHHc----CCChHHHHHHHhhCC-CCChhhHHHHHHHHHh----cCCcchHHHHHHHHHhcCCCCCCHHHHHHHH
Q 048364 85 NTMIKGYSK----SGNVCEARDFFERMP-LRNVASWSAMIAAYLN----AGAYDPGLKLFREMISNEGLTPDQMTIGAVL 155 (400)
Q Consensus 85 ~~l~~~~~~----~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll 155 (400)
..+...|.. .+++++|++.|++.. ..+..++..+...|.. .+++++|.++|++.. ..+ +...+..+.
T Consensus 151 ~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg 226 (490)
T 2xm6_A 151 QSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSA-TSG---DELGQLHLA 226 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH-HCC---CHHHHHHHH
Confidence 888888887 889999999999865 3477888899999988 899999999999988 433 456677777
Q ss_pred HHhhc----ccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHh----cCCHHHHHHHHHhccC-CCcccHHHHHHHH
Q 048364 156 SGCSH----LGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK----CGFLKYALMVFELMEE-RNVISWTALICGS 226 (400)
Q Consensus 156 ~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~ 226 (400)
..+.. .++.+. |...++...+.+ +...+..+...|.. .++.++|...|++..+ .+...+..+...|
T Consensus 227 ~~y~~g~g~~~~~~~--A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y 301 (490)
T 2xm6_A 227 DMYYFGIGVTQDYTQ--SRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLY 301 (490)
T ss_dssp HHHHHTSSSCCCHHH--HHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHH--HHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77765 778888 999999888775 45567778888888 8999999999999876 4566778888888
Q ss_pred HhC-----CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHH
Q 048364 227 AHR-----GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG---LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298 (400)
Q Consensus 227 ~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 298 (400)
... +++++|+..|++..+.| +...+..+...+...| +.++|.++|++..+. .++..+..+...|.
T Consensus 302 ~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~ 374 (490)
T 2xm6_A 302 DKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALL 374 (490)
T ss_dssp HHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHH
T ss_pred HcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHH
Confidence 887 89999999999998875 4566777777777756 789999999999853 46778888999999
Q ss_pred h----cCChHHHHHHHHhccCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCC--CCchHHHHHHHHhhcc
Q 048364 299 K----AGFLEEAYEVIRTMRLEPNVIIWGSFLAACKE----HKQFDMAERVIKQALRMVKPE--NDGGVFTLICDLYTMN 368 (400)
Q Consensus 299 ~----~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 368 (400)
. .+++++|.+.|++.--..+...+..+...|.. .+++++|...|+++.+.+ |. .++.....+...+..
T Consensus 375 ~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~-~~~~~~~~a~~~l~~~~~~- 452 (490)
T 2xm6_A 375 QGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND-MNLFGTENRNITEKKLTAK- 452 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH-CCHHHHHHHHHHHTTSCHH-
T ss_pred cCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CCCcCCHHHHHHHHhcCHh-
Confidence 8 89999999999998212356778888888888 899999999999999998 52 155555555554443
Q ss_pred cchHH----HHHHHHHH
Q 048364 369 EKWEG----AERVRKLM 381 (400)
Q Consensus 369 g~~~~----a~~~~~~m 381 (400)
+.+. |.+++++.
T Consensus 453 -~~~~a~~~a~~~~~~~ 468 (490)
T 2xm6_A 453 -QLQQAELLSQQYIEKY 468 (490)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHH
Confidence 3333 44555544
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=3.2e-17 Score=139.00 Aligned_cols=243 Identities=12% Similarity=0.071 Sum_probs=183.8
Q ss_pred HHHhcCCcchHHHHHHHHHhcCCCCCCH--HHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhc
Q 048364 121 AYLNAGAYDPGLKLFREMISNEGLTPDQ--MTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198 (400)
Q Consensus 121 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (400)
.....|+++.|++.++... ...|+. .....+.+++...|+++. +...++. .-+|+..++..+...+...
T Consensus 8 ~~~~~g~y~~ai~~~~~~~---~~~p~~~~e~~~~l~r~yi~~g~~~~--al~~~~~----~~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVK---PSSPERDVERDVFLYRAYLAQRKYGV--VLDEIKP----SSAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSC---CCSHHHHHHHHHHHHHHHHHTTCHHH--HHHHSCT----TSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHhcc---cCCchhhHHHHHHHHHHHHHCCCHHH--HHHHhcc----cCChhHHHHHHHHHHHcCC
Confidence 3444566666666655543 233432 233445566666666655 4433322 1345667778888889999
Q ss_pred CCHHHHHHHHHhccC----C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 048364 199 GFLKYALMVFELMEE----R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKY 273 (400)
Q Consensus 199 g~~~~A~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 273 (400)
|+.++|.+.++++.. | +...+..+...+...|++++|+..+++ +.+...+..++..+.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999998752 4 345667777899999999999999987 45778899999999999999999999
Q ss_pred HHHhhhhcCCCCChhhH---HHHHHHHHhcCChHHHHHHHHhc--cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048364 274 FKMIDEEYDLEPRIQHY---GCMVDLFGKAGFLEEAYEVIRTM--RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM 348 (400)
Q Consensus 274 ~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (400)
++.+.+. .|+.... ..++..+...|++++|..+|+++ ..+++...++.+..++.+.|++++|...++++++.
T Consensus 153 l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999854 3543211 22334444569999999999999 33457788999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHhhcccchHH-HHHHHHHHhc
Q 048364 349 VKPENDGGVFTLICDLYTMNEKWEG-AERVRKLMLN 383 (400)
Q Consensus 349 ~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~ 383 (400)
. | .++.++..++.++...|+.++ +.++++++.+
T Consensus 230 ~-p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 230 D-S-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp C-T-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred C-C-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9 8 899999999999999999976 5688888765
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=7.7e-17 Score=139.38 Aligned_cols=255 Identities=9% Similarity=0.040 Sum_probs=135.7
Q ss_pred HhCCHHHHHHHHhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHhhCC---CCChhhHHHHHHHHHhcCCcchHHHHH
Q 048364 62 VVTSFGFARKLFDELPE---RNAVTWNTMIKGYSKSGNVCEARDFFERMP---LRNVASWSAMIAAYLNAGAYDPGLKLF 135 (400)
Q Consensus 62 ~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~ 135 (400)
..|++++|..+|+++.+ .+...+..+...+.+.|++++|.+.|+++. +.+..++..+...+...|++++|.+.+
T Consensus 33 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 112 (327)
T 3cv0_A 33 KLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASL 112 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45555555555544431 234455555566666666666666666543 235567777777778888888888888
Q ss_pred HHHHhcCCCCCCHH-HHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHH-HH-HHHhcCCHHHHHHHHHhcc
Q 048364 136 REMISNEGLTPDQM-TIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL-VD-MYAKCGFLKYALMVFELME 212 (400)
Q Consensus 136 ~~m~~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~~A~~~~~~~~ 212 (400)
+++.+. .|+.. .+..+...+ |+......+ .. .+...|++++|...++++.
T Consensus 113 ~~~~~~---~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 165 (327)
T 3cv0_A 113 RAWLLS---QPQYEQLGSVNLQAD------------------------VDIDDLNVQSEDFFFAAPNEYRECRTLLHAAL 165 (327)
T ss_dssp HHHHHT---STTTTTC--------------------------------------------CCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHh---CCccHHHHHHHhHHH------------------------HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHH
Confidence 777622 23221 111110000 000000011 11 1344455555555555544
Q ss_pred C---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhh
Q 048364 213 E---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQH 289 (400)
Q Consensus 213 ~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 289 (400)
+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+. .+.+...
T Consensus 166 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~ 242 (327)
T 3cv0_A 166 EMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRV 242 (327)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred hhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHH
Confidence 3 233455555566666666666666666655542 224455666666666666666666666666532 1234555
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc-cCCc-------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048364 290 YGCMVDLFGKAGFLEEAYEVIRTM-RLEP-------------NVIIWGSFLAACKEHKQFDMAERVIKQAL 346 (400)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 346 (400)
+..+..+|...|++++|.+.+++. ...| +...|..+..++...|++++|..++++.+
T Consensus 243 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 243 MYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 666666666666666666666665 2222 24566666666666677766666665443
No 31
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=6.7e-19 Score=165.04 Aligned_cols=148 Identities=11% Similarity=0.106 Sum_probs=97.3
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHH
Q 048364 217 ISWTALICGSAHRGYSEDALSLFEMMQA---TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293 (400)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 293 (400)
.+||++|.+||+.|+.++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+. |+.||..+|+++
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHHHHH
Confidence 4677777777777777777777766653 367777777777777777777777777777777743 777777777777
Q ss_pred HHHHHhcCCh-HHHHHHHHhc---cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CCchHHHHHHHHh
Q 048364 294 VDLFGKAGFL-EEAYEVIRTM---RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPE----NDGGVFTLICDLY 365 (400)
Q Consensus 294 ~~~~~~~g~~-~~a~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~ 365 (400)
|.++++.|+. ++|.++|++| |+.||..+|++++.++.+. .+++.++++.....|+ +...+...|...|
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 7777777764 5677777777 7777777777777554332 3333333332211111 1234445566666
Q ss_pred hccc
Q 048364 366 TMNE 369 (400)
Q Consensus 366 ~~~g 369 (400)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 6544
No 32
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=8e-15 Score=135.58 Aligned_cols=339 Identities=10% Similarity=0.029 Sum_probs=238.0
Q ss_pred HHHHHHhCcccchhhhhHHHHHHHhCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHhhCC--CCChh
Q 048364 39 HSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPE--R-NAVTWNTMIKGYSKSGNVCEARDFFERMP--LRNVA 113 (400)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~ 113 (400)
++..++..+. +...|..++.....|++++|..+|+++.+ | +...|..++..+.+.|++++|.++|++.. .|+..
T Consensus 2 le~al~~~P~-~~~~w~~l~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~ 80 (530)
T 2ooe_A 2 AEKKLEENPY-DLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHID 80 (530)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHH
T ss_pred hhhHhhhCCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChH
Confidence 4455554322 66788888873388999999999999975 3 56679999999999999999999999976 46777
Q ss_pred hHHHHHHH-HHhcCCcchHHH----HHHHHHhcCCCCCC-HHHHHHHHHHhhc---------ccchhhhhhhhhhhHHHh
Q 048364 114 SWSAMIAA-YLNAGAYDPGLK----LFREMISNEGLTPD-QMTIGAVLSGCSH---------LGSVGLLMGKSAHGFIVK 178 (400)
Q Consensus 114 ~~~~l~~~-~~~~g~~~~a~~----~~~~m~~~~~~~p~-~~~~~~ll~~~~~---------~~~~~~~~a~~~~~~~~~ 178 (400)
.|...+.. ....|+.+.|.+ +|+......|..|+ ...|...+....+ .|+++. +..+++...+
T Consensus 81 lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~--a~~~y~~al~ 158 (530)
T 2ooe_A 81 LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITA--VRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHH--HHHHHHHHTT
T ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHH--HHHHHHHHHh
Confidence 77777753 345688888776 77777644565554 4566665555433 677777 7878877776
Q ss_pred ccccchHHHHHHHHHHH-------------HhcCCHH-------------------------------------------
Q 048364 179 NEWELNEQIATILVDMY-------------AKCGFLK------------------------------------------- 202 (400)
Q Consensus 179 ~~~~~~~~~~~~l~~~~-------------~~~g~~~------------------------------------------- 202 (400)
........+|....... .+.++++
T Consensus 159 ~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~ 238 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ 238 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHH
Confidence 32111122222111100 0011122
Q ss_pred -----------------HHHHHHHhccC--C-CcccHHHHHHHHHh-------CCChh-------hHHHHHHHHHHCCCC
Q 048364 203 -----------------YALMVFELMEE--R-NVISWTALICGSAH-------RGYSE-------DALSLFEMMQATGVK 248 (400)
Q Consensus 203 -----------------~A~~~~~~~~~--~-~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~m~~~~~~ 248 (400)
.+..+|++... | +...|...+..+.+ .|+++ +|..+|++..+.-.+
T Consensus 239 ~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p 318 (530)
T 2ooe_A 239 WEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK 318 (530)
T ss_dssp HHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS
T ss_pred HHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc
Confidence 33344444433 2 34456666666654 68877 899999988763123
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC-h-hhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc-HHHHHH
Q 048364 249 PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR-I-QHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN-VIIWGS 324 (400)
Q Consensus 249 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~-~~~~~~ 324 (400)
-+...+..++..+.+.|++++|..+|+++.+ ..|+ . ..|..++..+.+.|++++|.++|++. ...|+ ...|..
T Consensus 319 ~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~ 395 (530)
T 2ooe_A 319 KNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT 395 (530)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHH
Confidence 3567888888888999999999999999984 2453 2 47888888888999999999999988 44443 223322
Q ss_pred HHHH-HHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhccc
Q 048364 325 FLAA-CKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 325 l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 385 (400)
.+.. +...|++++|..+|+++++.. | .++..+..++..+.+.|+.++|..+|++....+
T Consensus 396 ~a~~~~~~~~~~~~A~~~~e~al~~~-p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 396 AALMEYYCSKDKSVAFKIFELGLKKY-G-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHH-T-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHHC-C-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 2222 336899999999999999998 8 789999999999999999999999999998753
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.74 E-value=1.1e-18 Score=163.59 Aligned_cols=161 Identities=10% Similarity=0.125 Sum_probs=129.2
Q ss_pred ccchHHHHHHHHHHHHhcCCHHHHHHHHHhcc-------CCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHH
Q 048364 181 WELNEQIATILVDMYAKCGFLKYALMVFELME-------ERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMT 253 (400)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 253 (400)
......+|++||++|++.|++++|.++|++|. .||+.+||+||.+||+.|++++|.++|++|.+.|+.||..|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456789999999999999999999997764 48999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCh-hhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--cCCcc------HHHHHH
Q 048364 254 FTGVLTACVHTGLV-DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--RLEPN------VIIWGS 324 (400)
Q Consensus 254 ~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~p~------~~~~~~ 324 (400)
|+++|.++++.|+. ++|.++|++|.++ |+.||..+|++++....+. .+++.++++ ++.|+ ..+...
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P~f~p~~~~~~~~~t~~L 277 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRA----TVLKAVHKVKPTFSLPPQLPPPVNTSKL 277 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHH----HHHHHHGGGCCCCCCCCCCCCCCCCCTT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHH----HHHHHHHHhCcccCCCCCCcccccchHH
Confidence 99999999999985 7899999999955 9999999999998776665 445555555 33333 344555
Q ss_pred HHHHHHhcC---------CHHHHHHHHHHHH
Q 048364 325 FLAACKEHK---------QFDMAERVIKQAL 346 (400)
Q Consensus 325 l~~~~~~~~---------~~~~a~~~~~~~~ 346 (400)
|...|.+.+ ..++-..++++-+
T Consensus 278 L~dl~s~d~~~s~pk~~~~~~~L~~~~~~Ql 308 (1134)
T 3spa_A 278 LRDVYAKDGRVSYPKLHLPLKTLQCLFEKQL 308 (1134)
T ss_dssp THHHHCCCSCCCCCCCSSCHHHHHHHHHHHH
T ss_pred HHHHHccCCCCcCccccCCHHHHHHHHHHHH
Confidence 666666554 2345555555544
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.74 E-value=9.3e-15 Score=141.66 Aligned_cols=325 Identities=15% Similarity=0.083 Sum_probs=204.6
Q ss_pred CchhHHHHHHHhcccchhHHHHHHHHHHHHhCc--ccchhhhhHHHH---------------------------HH-HhC
Q 048364 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGF--ISHVYVATSLLH---------------------------EY-VVT 64 (400)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~---------------------------~~-~~g 64 (400)
++.-....++++...|.+.+|.++++++.-.+- ..+...-+.++. .+ ..|
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNE 1063 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCC
Confidence 444557778888899999999999999874321 012223333332 23 455
Q ss_pred CHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCC
Q 048364 65 SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGL 144 (400)
Q Consensus 65 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 144 (400)
.+++|..+|++.... ....+.++ -..+++++|.++.++.. +..+|..+..++.+.|++++|++.|.+.
T Consensus 1064 lyEEAf~IYkKa~~~-~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------ 1131 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFDVN-TSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------ 1131 (1630)
T ss_pred CHHHHHHHHHHcCCH-HHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------
Confidence 555555555554311 11112121 14555666666666553 3566667777777777777777777443
Q ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHH
Q 048364 145 TPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALIC 224 (400)
Q Consensus 145 ~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~ 224 (400)
-|...|..++.++.+.|++++ +.+++....+.. +++.+.+.++.+|++.+++++...+. ..++...|..+..
T Consensus 1132 -dD~say~eVa~~~~~lGkyEE--AIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd 1203 (1630)
T 1xi4_A 1132 -DDPSSYMEVVQAANTSGNWEE--LVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGD 1203 (1630)
T ss_pred -CChHHHHHHHHHHHHcCCHHH--HHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHH
Confidence 345566667777777777777 777776666554 22223334777777777776533332 3345555666777
Q ss_pred HHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChH
Q 048364 225 GSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLE 304 (400)
Q Consensus 225 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 304 (400)
.|...|++++|..+|... ..|..+..++.+.|++++|.+.+++.. +..+|..+..+|...|++.
T Consensus 1204 ~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1204 RCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHHH
Confidence 777777777777777763 357777777777777777777776653 3466777777777777777
Q ss_pred HHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcc--cchHHHHHHHH
Q 048364 305 EAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN--EKWEGAERVRK 379 (400)
Q Consensus 305 ~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 379 (400)
.|......+ ..+...+..++..|.+.|.+++|+.+++..+... + .+...|..+...|.+. ++.-++.++|.
T Consensus 1268 LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-r-aH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1268 LAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLE-R-AHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-h-hHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 777666543 3344456677788888888888888888888777 6 6777777777666643 44444444444
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=5.4e-16 Score=125.72 Aligned_cols=197 Identities=17% Similarity=0.040 Sum_probs=157.4
Q ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 048364 182 ELNEQIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL 258 (400)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 258 (400)
+++...+..+...+.+.|++++|...|++..+ | +...+..+...+.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45667788889999999999999999999876 3 45678888999999999999999999998863 23567888899
Q ss_pred HHHHhc-----------CChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHHHHHHHH
Q 048364 259 TACVHT-----------GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWGSFL 326 (400)
Q Consensus 259 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~l~ 326 (400)
.++... |++++|...+++..+. .+.+...+..+..+|...|++++|...|++. .+..+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 999999 9999999999999853 2335778899999999999999999999998 2227788899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 327 AACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 327 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
.+|...|++++|...++++++.. | .++.++..+..++...|++++|+..+++...
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-P-KDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-T-TCHHHHHHHHHHHTC----------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999999999999999999 8 8899999999999999999999999887643
No 36
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.72 E-value=2.6e-14 Score=138.61 Aligned_cols=313 Identities=12% Similarity=0.139 Sum_probs=241.9
Q ss_pred HHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHH-H-HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChH
Q 048364 21 HILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHE-Y-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVC 98 (400)
Q Consensus 21 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 98 (400)
.+...|...|.+++|..+|++.. .+...+.. + ..+++++|.++.++.. +..+|..+..++...|+++
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~---------~~~~A~~VLie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFD---------VNTSAVQVLIEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC---------CHHHHHHHHHHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHH
Confidence 34556667888888888887751 12222233 3 7888999999998774 4678899999999999999
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHh
Q 048364 99 EARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK 178 (400)
Q Consensus 99 ~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~ 178 (400)
+|++.|.+. .|...|..++.++.+.|++++|.++|...+ .. .+++...+.+.-+|++.++++. ...+. +
T Consensus 1123 EAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mAr-k~--~~e~~Idt~LafaYAKl~rlee--le~fI----~ 1191 (1630)
T 1xi4_A 1123 EAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMAR-KK--ARESYVETELIFALAKTNRLAE--LEEFI----N 1191 (1630)
T ss_pred HHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHH-hh--cccccccHHHHHHHHhhcCHHH--HHHHH----h
Confidence 999999775 678889999999999999999999999887 32 3444444458889999988765 44332 1
Q ss_pred ccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 048364 179 NEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL 258 (400)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 258 (400)
.++...+..+...|...|++++|..+|... ..|..+..+|++.|++++|.+.+++. .+..+|..+-
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~ 1257 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 1257 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHH
Confidence 345566777999999999999999999986 48999999999999999999999876 3668899999
Q ss_pred HHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccH-HHHHHHHHHHHhc--CC
Q 048364 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNV-IIWGSFLAACKEH--KQ 334 (400)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~-~~~~~l~~~~~~~--~~ 334 (400)
.+|...|++..|......+. .++..+..++..|.+.|.+++|..+++.. +..|.. ..|.-+...|++. ++
T Consensus 1258 ~acve~~Ef~LA~~cgl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pek 1331 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQK 1331 (1630)
T ss_pred HHHhhhhHHHHHHHHHHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHH
Confidence 99999999999988765433 35667789999999999999999999877 666533 3566666666653 34
Q ss_pred HHHHHHHHHHHHHcCCCC-----CCchHHHHHHHHhhcccchHHHHHH
Q 048364 335 FDMAERVIKQALRMVKPE-----NDGGVFTLICDLYTMNEKWEGAERV 377 (400)
Q Consensus 335 ~~~a~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~ 377 (400)
..++.++|..-.. .|+ .+...|..++..|.+.|+++.|...
T Consensus 1332 lmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1332 MREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 5555555543322 132 3567899999999999999999843
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.4e-15 Score=126.70 Aligned_cols=219 Identities=10% Similarity=0.001 Sum_probs=145.6
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHH
Q 048364 113 ASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILV 192 (400)
Q Consensus 113 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 192 (400)
..|..+...+...|++++|+..|++..+. . ++...+ ..+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-~--~~~~~~-------------------------------------~~~~ 45 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWEL-H--KDITYL-------------------------------------NNRA 45 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S--CCTHHH-------------------------------------HHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh-h--ccHHHH-------------------------------------HHHH
Confidence 45666667777777777777777776622 2 333444 4445
Q ss_pred HHHHhcCCHHHHHHHHHhccC--CC--------cccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048364 193 DMYAKCGFLKYALMVFELMEE--RN--------VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACV 262 (400)
Q Consensus 193 ~~~~~~g~~~~A~~~~~~~~~--~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 262 (400)
.+|...|++++|...+++..+ |+ ...+..+...+...|++++|...|++.... .|+. ..+.
T Consensus 46 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~ 116 (258)
T 3uq3_A 46 AAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILT 116 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHH
Confidence 555555555555555555443 11 345566666667777777777777766664 2332 2355
Q ss_pred hcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHH
Q 048364 263 HTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAER 340 (400)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 340 (400)
..|++++|...++.+.+ ..+.+...+..+...+...|++++|...+++. ...| +..++..+..++...|++++|..
T Consensus 117 ~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 194 (258)
T 3uq3_A 117 KLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIA 194 (258)
T ss_dssp HHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHH
Confidence 56777777777777764 22234566777777788888888888888777 3333 46677777888888888888888
Q ss_pred HHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 341 VIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
.++++++.. | .++.++..++.++...|++++|...+++..+.
T Consensus 195 ~~~~al~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 195 DCNKAIEKD-P-NFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHC-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-H-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 888888877 7 67778888888888888888888888777654
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.4e-15 Score=126.71 Aligned_cols=229 Identities=12% Similarity=0.042 Sum_probs=171.2
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHhhCC--CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Q 048364 81 AVTWNTMIKGYSKSGNVCEARDFFERMP--LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGC 158 (400)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~ 158 (400)
...|..+...+...|++++|++.|++.. ..+...|..+..++...|++++|++.+++..+. .|+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~--------- 72 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQ---GREMR--------- 72 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTT---------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---Ccccc---------
Confidence 4568888999999999999999998764 267789999999999999999999999998721 11100
Q ss_pred hcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHH
Q 048364 159 SHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL 238 (400)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 238 (400)
.+ ......++..+..+|...|++++|...|++..+.+.. ...+...|++++|...
T Consensus 73 ---~~-----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 73 ---AD-----------------YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKK 127 (258)
T ss_dssp ---CC-----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHH
T ss_pred ---cc-----------------hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHH
Confidence 00 0011455666777777788888888887777652221 2345666778888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc
Q 048364 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP 317 (400)
Q Consensus 239 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p 317 (400)
++++.... +.+...+..+...+...|++++|...++.+.+. .+.+...+..+..+|...|++++|...+++. ...|
T Consensus 128 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 128 AEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 88887752 224566777888888888888888888888753 2345677888888888889999998888887 4344
Q ss_pred -cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 318 -NVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 318 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
+...+..+..++...|++++|...++++.+..
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 46778888888888999999999888888765
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.70 E-value=6.1e-15 Score=133.16 Aligned_cols=343 Identities=12% Similarity=0.006 Sum_probs=221.7
Q ss_pred HHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCH---HHHHHHHhhCCCCChhhHHHHHHHHHcCC-
Q 048364 21 HILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSF---GFARKLFDELPERNAVTWNTMIKGYSKSG- 95 (400)
Q Consensus 21 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~~- 95 (400)
.+...+.+.|++++|.++|+...+.| +...+..+-..+ ..|+. ++|...|++..+.++..+..+...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Confidence 35666778899999999999998876 344455555666 77777 99999999998777777888888666655
Q ss_pred ----ChHHHHHHHhhCCCC-ChhhHHHHHHHHHhcCCcch---HHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhh
Q 048364 96 ----NVCEARDFFERMPLR-NVASWSAMIAAYLNAGAYDP---GLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLL 167 (400)
Q Consensus 96 ----~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~---a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 167 (400)
++++|++.|++...+ +..++..|...|...+..++ +.+.+.... ..| +......+...|...+.++.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~-~~g---~~~a~~~Lg~~y~~~~~~~~- 159 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQ-AAG---YPEAGLAQVLLYRTQGTYDQ- 159 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHH-HHT---CTTHHHHHHHHHHHHTCGGG-
T ss_pred CCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-HCC---CHHHHHHHHHHHHcCCCccc-
Confidence 788999999987643 55678888888887765444 444444443 222 23455566666766676655
Q ss_pred hhhhhhhHHHhccccchHHHHHHHHHHHHhcC---CHHHHHHHHHhccCC---CcccHHHHHHHHHhC----CChhhHHH
Q 048364 168 MGKSAHGFIVKNEWELNEQIATILVDMYAKCG---FLKYALMVFELMEER---NVISWTALICGSAHR----GYSEDALS 237 (400)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~----~~~~~a~~ 237 (400)
+......+.+.-...++..+..|..+|...| +.++|.+.|++..+. +...+..+...|... +++++|+.
T Consensus 160 -~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 -HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp -GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred -CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 4433333333333334457788888888888 888888888887653 222335666666554 68889999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH-H--HhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcC-----ChHHHHHH
Q 048364 238 LFEMMQATGVKPNEMTFTGVLTA-C--VHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG-----FLEEAYEV 309 (400)
Q Consensus 238 ~~~~m~~~~~~p~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~ 309 (400)
.|++.. .| +...+..+... + ...+++++|..+|++..+. | +...+..|...|. .| ++++|.+.
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 998876 33 44455555555 3 4578899999999888743 3 6667777777777 45 88999999
Q ss_pred HHhccCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhc----ccchHHHHHHHHHH
Q 048364 310 IRTMRLEPNVIIWGSFLAACKE----HKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM----NEKWEGAERVRKLM 381 (400)
Q Consensus 310 ~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m 381 (400)
|++.- .-+...+..+...|.. ..++++|..+|++..+.+ ++.....|...|.. ..+.++|..+++..
T Consensus 310 ~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 310 FEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG----QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp HHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT----CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred HHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC----hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 98886 5566777777777765 348899999999988876 34567777777764 45788888888888
Q ss_pred hcccc
Q 048364 382 LNQNV 386 (400)
Q Consensus 382 ~~~~~ 386 (400)
.+.|.
T Consensus 385 ~~~g~ 389 (452)
T 3e4b_A 385 KAQDT 389 (452)
T ss_dssp HTTCC
T ss_pred HHCCC
Confidence 77664
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.68 E-value=4.3e-15 Score=125.03 Aligned_cols=240 Identities=10% Similarity=-0.074 Sum_probs=170.1
Q ss_pred CCcchHHHHHHHHHhcCCCCC--CHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHH
Q 048364 126 GAYDPGLKLFREMISNEGLTP--DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKY 203 (400)
Q Consensus 126 g~~~~a~~~~~~m~~~~~~~p--~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 203 (400)
|++++|++.|+++.+.....| +..++..+..++...|+++. |...++.+.+.. +.+..++..+..+|...|++++
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRAL--ARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHH--HHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 455555555555552111111 23345555555555566655 555555555543 2246677788888999999999
Q ss_pred HHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhh
Q 048364 204 ALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEE 280 (400)
Q Consensus 204 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (400)
|...|++..+ .+...+..+...|...|++++|...++++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999988875 35678888999999999999999999999885 455444555555667789999999999888754
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC
Q 048364 281 YDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN-----VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND 354 (400)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 354 (400)
.+++...+ .++..+...++.++|.+.+++. ...|+ ...+..+...|...|++++|...++++++.. | .+
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p-~~ 248 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-V-HN 248 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-C-TT
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-c-hh
Confidence 23444444 4777888889999999999987 43342 5788899999999999999999999999988 7 45
Q ss_pred chHHHHHHHHhhcccchHHHHHHH
Q 048364 355 GGVFTLICDLYTMNEKWEGAERVR 378 (400)
Q Consensus 355 ~~~~~~l~~~~~~~g~~~~a~~~~ 378 (400)
...+ ..++...|++++|++.+
T Consensus 249 ~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHH---HHHHHHHHHHHHC----
T ss_pred HHHH---HHHHHHHHHHHhhHHHH
Confidence 4433 55777889999988766
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.67 E-value=8.8e-15 Score=122.97 Aligned_cols=244 Identities=10% Similarity=-0.023 Sum_probs=143.1
Q ss_pred hHHHHHHHHHcCCChHHHHHHHhhCC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhh
Q 048364 83 TWNTMIKGYSKSGNVCEARDFFERMP---LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCS 159 (400)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 159 (400)
.+......+...|++++|++.|++.. +.+...+..+..+|...|++++|++.+++.. ..+ ++...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~--~~~~~--------- 72 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF-SKV--NATKA--------- 72 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHH-TTS--CTTTC---------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcc--CchhH---------
Confidence 34445555666666666666666643 2244466666666666666666666666666 221 11111
Q ss_pred cccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHH
Q 048364 160 HLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDAL 236 (400)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 236 (400)
....+..+..+|...|++++|...|++..+ .+...+..+...|...|++++|+
T Consensus 73 ------------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 128 (272)
T 3u4t_A 73 ------------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAI 128 (272)
T ss_dssp ------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHH
Confidence 122345556666666666666666666554 23455666666666777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCC---hHHHHHHHHhc
Q 048364 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF---LEEAYEVIRTM 313 (400)
Q Consensus 237 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~ 313 (400)
..|++..+.. +.+...+..+...+...+++++|...++.+.+. .+.+...+..+..++...|+ +++|...+++.
T Consensus 129 ~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 129 QYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 7766665541 223445555552333344777777777777642 12235556666666666666 66666666655
Q ss_pred ----cCCcc------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhc
Q 048364 314 ----RLEPN------VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM 367 (400)
Q Consensus 314 ----~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 367 (400)
...|+ ..+|..+...|...|++++|...++++.+.. | .++.+...+......
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p-~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 206 IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD-P-TNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHC-----
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-c-cHHHHHHHhhhhhcc
Confidence 11233 2467777788888888888888888888888 7 677666666554443
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.66 E-value=1.8e-14 Score=119.70 Aligned_cols=196 Identities=12% Similarity=-0.042 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 261 (400)
...+..+...|...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56677788888888888888888887764 345677778888888888888888888887763 23567788888888
Q ss_pred HhcCChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHH
Q 048364 262 VHTGLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMA 338 (400)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 338 (400)
...|++++|..+++.+.+ .+..| +...+..+..+|...|++++|.+.+++. ...| +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 888999999988888874 22344 4567778888888889999999888887 3334 567788888888889999999
Q ss_pred HHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 339 ERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
...++++.+.. | .+...+..+..++...|++++|.+.++++.+.
T Consensus 195 ~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGG-G-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTS-C-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-c-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999988877 7 77888888888888889999999888888764
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.64 E-value=5.4e-14 Score=114.41 Aligned_cols=197 Identities=12% Similarity=-0.046 Sum_probs=151.5
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048364 184 NEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260 (400)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 260 (400)
+..++..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.... +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 456677778888888888888888887764 345677778888888888888888888887753 3356777888888
Q ss_pred HHhc-CChhhHHHHHHHhhhhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHH
Q 048364 261 CVHT-GLVDEGRKYFKMIDEEYDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFD 336 (400)
Q Consensus 261 ~~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 336 (400)
+... |++++|...++.+.+ .+..| +...+..+..++...|++++|...++++ ...| +...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 888888888888875 22333 3566777888888888888888888887 3344 4667788888888888888
Q ss_pred HHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 337 MAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 337 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
+|...++++.+.. |..+...+..+...+...|+.+.|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 8888888888877 534666777777788888888888888887764
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=8e-15 Score=120.97 Aligned_cols=191 Identities=13% Similarity=0.060 Sum_probs=80.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048364 188 ATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264 (400)
Q Consensus 188 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 264 (400)
+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVK 104 (243)
T ss_dssp ----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHh
Confidence 33334444444444444444444432 122334444444444445555555444444431 11334444444444555
Q ss_pred CChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHH
Q 048364 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVI 342 (400)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 342 (400)
|++++|.+.++++.+. .+.+...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|...+
T Consensus 105 ~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp TCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555544432 1223344444445555555555555555544 2222 3344444445555555555555555
Q ss_pred HHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 343 KQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
+++.+.. | .+..++..++.+|...|++++|...++++.+
T Consensus 183 ~~~~~~~-~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 183 AAVTEQD-P-GHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHC-T-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHhC-c-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 5555544 4 4444555555555555555555555554443
No 45
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.64 E-value=1.1e-14 Score=129.75 Aligned_cols=268 Identities=14% Similarity=0.068 Sum_probs=133.3
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHhhCC--CC-C----hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHH
Q 048364 82 VTWNTMIKGYSKSGNVCEARDFFERMP--LR-N----VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAV 154 (400)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 154 (400)
..+......+...|++++|+..|++.. .| + ...|..+...+...|++++|...+++......-..+
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------- 82 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD------- 82 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-------
Confidence 344455555666666666666666543 22 2 234555666666666666666666666521100000
Q ss_pred HHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----cccHHHHHHH
Q 048364 155 LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE-----RN----VISWTALICG 225 (400)
Q Consensus 155 l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~ 225 (400)
.+....++..+...|...|++++|...+++..+ ++ ..++..+...
T Consensus 83 --------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 83 --------------------------QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNV 136 (406)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --------------------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 011233444455555555555555555554432 11 2244455555
Q ss_pred HHhCCC--------------------hhhHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHhhhh
Q 048364 226 SAHRGY--------------------SEDALSLFEMMQAT----GVKP-NEMTFTGVLTACVHTGLVDEGRKYFKMIDEE 280 (400)
Q Consensus 226 ~~~~~~--------------------~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (400)
|...|+ +++|...+++.... +..| ...++..+...+...|++++|...+++..+.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 555555 55555555544321 1111 1234455555556666666666666555432
Q ss_pred cCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048364 281 YDLEPR----IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-------NVIIWGSFLAACKEHKQFDMAERVIKQALRM 348 (400)
Q Consensus 281 ~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (400)
..-.++ ..++..+...|...|++++|...+++. .+.| ...++..+...|...|++++|...++++.+.
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 111111 124555555666666666666666554 1111 1334555556666666666666666665554
Q ss_pred CCCC-----CCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 349 VKPE-----NDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 349 ~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
. +. ....++..++.+|...|++++|.+.+++..+
T Consensus 297 ~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 297 A-QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp H-HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred H-HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 10 1134555566666666666666666555543
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.64 E-value=3.5e-14 Score=124.46 Aligned_cols=228 Identities=12% Similarity=0.093 Sum_probs=181.8
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHH
Q 048364 111 NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATI 190 (400)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (400)
+..+|+.+..++.+.|++++|++.|++.+ .+.|+ +..+|+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al---~l~P~------------------------------------~~~a~~~ 136 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAI---ELNAA------------------------------------NYTVWHF 136 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHH---HHCTT------------------------------------CHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHH---HhCcc------------------------------------CHHHHHH
Confidence 34678888888889999999999999887 23444 3445566
Q ss_pred HHHHHHhcCC-HHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048364 191 LVDMYAKCGF-LKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266 (400)
Q Consensus 191 l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 266 (400)
+..++...|+ +++|+..|+++.+ .+...|+.+..++...|++++|+..|+++.+... -+...|..+..++...|+
T Consensus 137 ~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~ 215 (382)
T 2h6f_A 137 RRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKL 215 (382)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCC
Confidence 6677777886 8888888888875 3556788888899999999999999999988642 367888899999999999
Q ss_pred hhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHh-cCChHHH-----HHHHHhc-cCCc-cHHHHHHHHHHHHhcC--CHH
Q 048364 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK-AGFLEEA-----YEVIRTM-RLEP-NVIIWGSFLAACKEHK--QFD 336 (400)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~~--~~~ 336 (400)
+++|+..++++.+. -+.+...|+.+..++.+ .|..++| ++.|++. .+.| +...|+.+..++...| +++
T Consensus 216 ~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~ 293 (382)
T 2h6f_A 216 WDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYP 293 (382)
T ss_dssp CTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCH
T ss_pred hHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchH
Confidence 99999999999853 23467889999999998 6665777 4777776 5556 5668888888888887 689
Q ss_pred HHHHHHHHHHHcCCCCCCchHHHHHHHHhhccc---------chHHHHHHHHHH-hc
Q 048364 337 MAERVIKQALRMVKPENDGGVFTLICDLYTMNE---------KWEGAERVRKLM-LN 383 (400)
Q Consensus 337 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~a~~~~~~m-~~ 383 (400)
+|...++++ +.. | .+...+..++.+|.+.| .+++|.++++++ .+
T Consensus 294 ~a~~~~~~~-~~~-p-~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 294 NLLNQLLDL-QPS-H-SSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHH-TTT-C-CCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHh-ccC-C-CCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence 999999998 665 7 78889999999998874 358999999998 44
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=2e-13 Score=114.80 Aligned_cols=222 Identities=9% Similarity=-0.071 Sum_probs=107.8
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhc----ccchhhhhhhhhhhHHHhccccchHH
Q 048364 111 NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSH----LGSVGLLMGKSAHGFIVKNEWELNEQ 186 (400)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~ 186 (400)
+..++..+...+...|++++|++.|++.. . +-+...+..+...+.. .+++++ |...+....+.+ +..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~-~---~~~~~a~~~lg~~~~~g~~~~~~~~~--A~~~~~~a~~~~---~~~ 75 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKAC-D---LKENSGCFNLGVLYYQGQGVEKNLKK--AASFYAKACDLN---YSN 75 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H---TTCHHHHHHHHHHHHHTSSSCCCHHH--HHHHHHHHHHTT---CHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHH-H---CCCHHHHHHHHHHHHcCCCcCCCHHH--HHHHHHHHHHCC---CHH
Confidence 44555666666666667777777776665 2 1122333334444444 444444 444444444333 333
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHhccC-CCcccHHHHHHHHHh----CCChhhHHHHHHHHHHCCCCCCHHHHHHH
Q 048364 187 IATILVDMYAK----CGFLKYALMVFELMEE-RNVISWTALICGSAH----RGYSEDALSLFEMMQATGVKPNEMTFTGV 257 (400)
Q Consensus 187 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 257 (400)
.+..+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 44444445555 5555555555554443 233344444455555 555555555555555443 33344444
Q ss_pred HHHHHh----cCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHhc-cCCccHHHHHHHHHH
Q 048364 258 LTACVH----TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK----AGFLEEAYEVIRTM-RLEPNVIIWGSFLAA 328 (400)
Q Consensus 258 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~-~~~p~~~~~~~l~~~ 328 (400)
...+.. .+++++|...+++..+. .+...+..+...|.. .+++++|.+.|++. ...| ...+..+...
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~ 227 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAM 227 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHH
Confidence 444444 45555555555555431 123344444555555 55555555555544 2222 3344444444
Q ss_pred HHh----cCCHHHHHHHHHHHHHcC
Q 048364 329 CKE----HKQFDMAERVIKQALRMV 349 (400)
Q Consensus 329 ~~~----~~~~~~a~~~~~~~~~~~ 349 (400)
|.. .+++++|...+++..+.+
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcC
Confidence 444 455555555555555554
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.63 E-value=2.6e-14 Score=117.90 Aligned_cols=209 Identities=14% Similarity=0.072 Sum_probs=149.6
Q ss_pred HHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHH
Q 048364 150 TIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGS 226 (400)
Q Consensus 150 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 226 (400)
.+..+...+...|+++. |...++.+.+.. +.+...+..+..+|...|++++|...|+++.+ .+...+..+...+
T Consensus 25 ~~~~~a~~~~~~~~~~~--A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEK--AAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHH--HHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 44444555555555555 555555555432 22456667777888888888888888887764 3556778888889
Q ss_pred HhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHH
Q 048364 227 AHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306 (400)
Q Consensus 227 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 306 (400)
...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999988764 336677888888999999999999999998853 244677888899999999999999
Q ss_pred HHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhh
Q 048364 307 YEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366 (400)
Q Consensus 307 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 366 (400)
.+.+++. ...| +..++..+..+|...|++++|...++++.+.. | .+..++..+.....
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p-~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-P-DHMLALHAKKLLGH 238 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-T-TCHHHHHHHTC---
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-c-chHHHHHHHHHHHh
Confidence 9999988 3334 56788889999999999999999999999998 7 67777666554433
No 49
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.63 E-value=5.3e-15 Score=132.27 Aligned_cols=267 Identities=11% Similarity=0.008 Sum_probs=167.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhCC--CC-Ch----hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 048364 84 WNTMIKGYSKSGNVCEARDFFERMP--LR-NV----ASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLS 156 (400)
Q Consensus 84 ~~~l~~~~~~~~~~~~a~~~~~~~~--~~-~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~ 156 (400)
+..+...+...|++++|+..|++.. .| +. ..|..+...|...|++++|...+++..+...-..
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---------- 120 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN---------- 120 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc----------
Confidence 3344455556666666666665543 12 21 2455555566666666666666665551100000
Q ss_pred HhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCC---------CcccHHHHHHHHH
Q 048364 157 GCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER---------NVISWTALICGSA 227 (400)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~ 227 (400)
.......++..+...|...|++++|...+++..+. ...++..+...|.
T Consensus 121 -----------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 121 -----------------------DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred -----------------------CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 01123445666667777777777777777665431 1235666677777
Q ss_pred hCCC-----------------hhhHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC
Q 048364 228 HRGY-----------------SEDALSLFEMMQAT----GVKP-NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP 285 (400)
Q Consensus 228 ~~~~-----------------~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 285 (400)
..|+ +++|+..+++..+. +..+ ...++..+...+...|++++|...+++..+...-.+
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 7777 77777777665432 1111 224667777788888888888888887764211111
Q ss_pred C----hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---
Q 048364 286 R----IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-------NVIIWGSFLAACKEHKQFDMAERVIKQALRMVK--- 350 (400)
Q Consensus 286 ~----~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--- 350 (400)
+ ...+..+..+|...|++++|.+.+++. ...| ...++..+...+...|++++|...++++++...
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 1 236777888888888888888888876 1111 245677788888888999999988888877541
Q ss_pred -CCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 351 -PENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 351 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
+.....++..++.+|...|++++|.+.+++..+
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 102245778888888888999999888887764
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=6.5e-14 Score=117.63 Aligned_cols=233 Identities=10% Similarity=0.016 Sum_probs=175.0
Q ss_pred hhhHHHHHH-HhCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHhhCCC--CCh----hhHHHHHHHH
Q 048364 53 VATSLLHEY-VVTSFGFARKLFDELPE--R-NAVTWNTMIKGYSKSGNVCEARDFFERMPL--RNV----ASWSAMIAAY 122 (400)
Q Consensus 53 ~~~~l~~~~-~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~l~~~~ 122 (400)
.+......+ ..|++++|+..|++..+ | +...+..+...+...|++++|++.|++... ++. .+|..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 344555666 99999999999998863 3 556899999999999999999999998753 232 3488999999
Q ss_pred HhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHH
Q 048364 123 LNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLK 202 (400)
Q Consensus 123 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 202 (400)
...|++++|++.|++..+. .|+ +..++..+..+|...|+++
T Consensus 85 ~~~~~~~~A~~~~~~a~~~---~~~------------------------------------~~~~~~~l~~~~~~~~~~~ 125 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDR---DTT------------------------------------RLDMYGQIGSYFYNKGNFP 125 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHH---STT------------------------------------CTHHHHHHHHHHHHTTCHH
T ss_pred HHcccHHHHHHHHHHHHhc---Ccc------------------------------------cHHHHHHHHHHHHHccCHH
Confidence 9999999999999999821 222 2345667778888889999
Q ss_pred HHHHHHHhccCC---CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hhhHHHHHHH
Q 048364 203 YALMVFELMEER---NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL---VDEGRKYFKM 276 (400)
Q Consensus 203 ~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~ 276 (400)
+|...|++..+. +...+..+...+...+++++|...|++..+.. +.+...+..+..++...++ +++|...+++
T Consensus 126 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 126 LAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp HHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 999999888762 34556666624444569999999999988763 2246677777888888888 8888888888
Q ss_pred hhhhcCCCCCh------hhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc-HHHHHHH
Q 048364 277 IDEEYDLEPRI------QHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN-VIIWGSF 325 (400)
Q Consensus 277 ~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~-~~~~~~l 325 (400)
+.+...-.|+. .+|..+...|...|++++|.+.|++. .+.|+ ...+..+
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGL 261 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHh
Confidence 87543333442 56778888999999999999999988 55564 3344333
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.63 E-value=1.4e-13 Score=114.26 Aligned_cols=204 Identities=14% Similarity=0.013 Sum_probs=150.7
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHH
Q 048364 112 VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATIL 191 (400)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (400)
...|..+...+...|++++|.+.|+++.+. .|+ +...+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~------------------------------------~~~~~~~l 77 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI---DPS------------------------------------SADAHAAL 77 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH---CTT------------------------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCC------------------------------------hHHHHHHH
Confidence 456666777777777777777777776621 121 33455566
Q ss_pred HHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCh
Q 048364 192 VDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKP-NEMTFTGVLTACVHTGLV 267 (400)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~ 267 (400)
..+|...|++++|.+.|+++.+ .+...+..+...+...|++++|...++++...+..| +...+..+..++...|++
T Consensus 78 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 157 (252)
T 2ho1_A 78 AVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKP 157 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCH
Confidence 6677777777777777777654 245567777788888888888888888887633344 456777788888889999
Q ss_pred hhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048364 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQA 345 (400)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 345 (400)
++|...++++.+. .+.+...+..+...|...|++++|...+++. ...| +...+..+...+...|++++|...++++
T Consensus 158 ~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 158 AQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp HHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999888853 2345677888888999999999999999888 3334 5667888888889999999999999999
Q ss_pred HHcCCCCCCchHH
Q 048364 346 LRMVKPENDGGVF 358 (400)
Q Consensus 346 ~~~~~~~~~~~~~ 358 (400)
.+.. | .++...
T Consensus 236 ~~~~-p-~~~~~~ 246 (252)
T 2ho1_A 236 KRLY-P-GSLEYQ 246 (252)
T ss_dssp HHHC-T-TSHHHH
T ss_pred HHHC-C-CCHHHH
Confidence 9988 6 555443
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=4e-14 Score=124.08 Aligned_cols=244 Identities=8% Similarity=0.019 Sum_probs=182.1
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHhhCC---CCChhhHHHHHHHHHhcCC-cchHHHHHHHHHhcCCCCCCHHHHHHHH
Q 048364 80 NAVTWNTMIKGYSKSGNVCEARDFFERMP---LRNVASWSAMIAAYLNAGA-YDPGLKLFREMISNEGLTPDQMTIGAVL 155 (400)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~ll 155 (400)
+...|+.+...+.+.|++++|++.|++.. ..+..+|+.+..++...|+ +++|+..|+++. .+.|+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al---~l~P~-------- 164 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAII---EEQPK-------- 164 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH---HHCTT--------
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHH---HHCCC--------
Confidence 34678888899999999999999999876 3467899999999999997 999999999998 23443
Q ss_pred HHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCCh
Q 048364 156 SGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYS 232 (400)
Q Consensus 156 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 232 (400)
+..+|..+..++...|++++|...|+++.+ .+...|..+..++...|++
T Consensus 165 ----------------------------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~ 216 (382)
T 2h6f_A 165 ----------------------------NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW 216 (382)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred ----------------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCCh
Confidence 333445555566666777777777777664 3556777777888888888
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChhhH-----HHHHHHhhhhcCCCCChhhHHHHHHHHHhcC--ChH
Q 048364 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVH-TGLVDEG-----RKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG--FLE 304 (400)
Q Consensus 233 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~ 304 (400)
++|+..|+++++... -+...|+.+..++.. .|..++| +..+++..+. -+.+...|..+...+...| +++
T Consensus 217 ~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~ 293 (382)
T 2h6f_A 217 DNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYP 293 (382)
T ss_dssp TTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCH
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchH
Confidence 888888888887643 256778888888887 5555777 4777777742 2335677888888888877 688
Q ss_pred HHHHHHHhccCCc-cHHHHHHHHHHHHhcC---------CHHHHHHHHHHH-HHcCCCCCCchHHHHHHHHhhc
Q 048364 305 EAYEVIRTMRLEP-NVIIWGSFLAACKEHK---------QFDMAERVIKQA-LRMVKPENDGGVFTLICDLYTM 367 (400)
Q Consensus 305 ~a~~~~~~~~~~p-~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~ 367 (400)
+|.+.+.++...| +...+..+..+|.+.| ..++|..+++++ .+.+ | .....|..+...+..
T Consensus 294 ~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P-~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 294 NLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD-T-IRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-G-GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC-c-hhHHHHHHHHHHHHH
Confidence 8888888874444 5567888888888764 258899999999 7887 7 677777777665543
No 53
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.62 E-value=5.5e-14 Score=126.88 Aligned_cols=312 Identities=10% Similarity=-0.019 Sum_probs=216.4
Q ss_pred HHHHH-HhCCHHHHHHHHhhCCCC-ChhhHHHHHHHHHcCCCh---HHHHHHHhhCCCCChhhHHHHHHHHHhcC-----
Q 048364 57 LLHEY-VVTSFGFARKLFDELPER-NAVTWNTMIKGYSKSGNV---CEARDFFERMPLRNVASWSAMIAAYLNAG----- 126 (400)
Q Consensus 57 l~~~~-~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~g----- 126 (400)
+...+ +.|++++|..+|++..++ +...+..+...|...|+. ++|++.|++....++..+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 44555 899999999999988653 555666677777778888 99999999988667788888888666655
Q ss_pred CcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcC----CHH
Q 048364 127 AYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG----FLK 202 (400)
Q Consensus 127 ~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~ 202 (400)
++++|+..|++.. ..|. |+ .+..+...|...+.... +...+..+.+....-++.....|...|...+ +.+
T Consensus 89 ~~~~A~~~~~~Aa-~~g~-~~--A~~~Lg~~y~~~~~~~~--~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAF-ANGE-GN--TLIPLAMLYLQYPHSFP--NVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHH-HTTC-SS--CHHHHHHHHHHCGGGCT--TCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHH-HCCC-HH--HHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHH
Confidence 7789999999998 4443 22 66667777777776665 5555555444332334566777888888887 455
Q ss_pred HHHHHHHhccCCCcccHHHHHHHHHhCC---ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CChhhHHHHHH
Q 048364 203 YALMVFELMEERNVISWTALICGSAHRG---YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT----GLVDEGRKYFK 275 (400)
Q Consensus 203 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~ 275 (400)
.+..+++.....++..+..+...|...| +.++|+..|++..+.| .++...+..+...|... +++++|..+|+
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 5666777777777779999999999999 9999999999999887 44566556677777655 78999999999
Q ss_pred HhhhhcCCCCChhhHHHHHHH-H--HhcCChHHHHHHHHhccCCccHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHH
Q 048364 276 MIDEEYDLEPRIQHYGCMVDL-F--GKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHK-----QFDMAERVIKQALR 347 (400)
Q Consensus 276 ~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~ 347 (400)
... +.++..+..+... | ...+++++|.+.|++.--..+...+..+...|. .| ++++|...|++..
T Consensus 242 ~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa- 314 (452)
T 3e4b_A 242 KIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV- 314 (452)
T ss_dssp HHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-
T ss_pred HHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-
Confidence 886 2456677777777 4 568999999999999821236667777777776 55 9999999999998
Q ss_pred cCCCCCCchHHHHHHHHhhc----ccchHHHHHHHHHHhcccc
Q 048364 348 MVKPENDGGVFTLICDLYTM----NEKWEGAERVRKLMLNQNV 386 (400)
Q Consensus 348 ~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 386 (400)
. .++..+..|...|.. ..++++|...+++..+.|.
T Consensus 315 ~----g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 315 G----REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp T----TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred C----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 3 477888999988877 4499999999999887664
No 54
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.62 E-value=1.2e-14 Score=125.74 Aligned_cols=200 Identities=13% Similarity=0.030 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----cccHHHHHHHHHhCCC--------------------hhhH
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFELMEE-----RN----VISWTALICGSAHRGY--------------------SEDA 235 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a 235 (400)
..++..+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 45667778888888888888888877654 12 2367777788888888 8888
Q ss_pred HHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC----hhhHHHHHHHHHhcCChHHH
Q 048364 236 LSLFEMMQAT----GVKP-NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR----IQHYGCMVDLFGKAGFLEEA 306 (400)
Q Consensus 236 ~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a 306 (400)
...+++.... +..| ....+..+...+...|++++|...++...+.....++ ..++..+...+...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8888776442 1111 2346777888889999999999999887642111111 33778888999999999999
Q ss_pred HHHHHhc-cCCc-------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCCchHHHHHHHHhhcccchHHH
Q 048364 307 YEVIRTM-RLEP-------NVIIWGSFLAACKEHKQFDMAERVIKQALRMVK----PENDGGVFTLICDLYTMNEKWEGA 374 (400)
Q Consensus 307 ~~~~~~~-~~~p-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a 374 (400)
.+.+++. ...| ...++..+...+...|++++|...++++.+... +.....++..+..+|...|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9999887 1111 145778888999999999999999999887641 111245788899999999999999
Q ss_pred HHHHHHHhcc
Q 048364 375 ERVRKLMLNQ 384 (400)
Q Consensus 375 ~~~~~~m~~~ 384 (400)
...+++..+.
T Consensus 323 ~~~~~~a~~~ 332 (338)
T 3ro2_A 323 MHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999988763
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.62 E-value=9.2e-14 Score=123.78 Aligned_cols=93 Identities=11% Similarity=0.025 Sum_probs=55.3
Q ss_pred CCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccc---hhhhhHHHHHH-HhCCHHHHHHHHhhCCC-----C----C
Q 048364 14 SDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISH---VYVATSLLHEY-VVTSFGFARKLFDELPE-----R----N 80 (400)
Q Consensus 14 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~-~~g~~~~a~~~~~~~~~-----~----~ 80 (400)
+....+......+...|++++|...|+++++...... ..++..+...+ ..|++++|...+++... . .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3445566777777888888888888888887643311 23555666666 77777777777665431 0 1
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHhh
Q 048364 81 AVTWNTMIKGYSKSGNVCEARDFFER 106 (400)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~a~~~~~~ 106 (400)
..++..+...+...|++++|+..|++
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~ 112 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQR 112 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22344444444445555555544444
No 56
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.61 E-value=3.5e-14 Score=114.99 Aligned_cols=110 Identities=16% Similarity=0.035 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 048364 199 GFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFK 275 (400)
Q Consensus 199 g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 275 (400)
|++++|...|++..+ | +...+..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...|+
T Consensus 98 g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~ 175 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYA 175 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444445444444432 2 22334444444444455555555554444443 344444444444444455555544444
Q ss_pred HhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHh
Q 048364 276 MIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312 (400)
Q Consensus 276 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 312 (400)
.+.+. .+.+...+..+...+...|++++|...|++
T Consensus 176 ~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 176 KALEQ--APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHH--STTCHHHHHHHHHHHTC-------------
T ss_pred HHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44421 122333444444444444444444444443
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.61 E-value=5.2e-13 Score=112.26 Aligned_cols=223 Identities=11% Similarity=-0.057 Sum_probs=192.9
Q ss_pred CHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHh----cCCHHHHHHHHHhccC-CCcccHHH
Q 048364 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAK----CGFLKYALMVFELMEE-RNVISWTA 221 (400)
Q Consensus 147 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~ 221 (400)
+..++..+...+...|++++ |...+....+.+ +...+..+...|.. .+++++|...|++..+ .+...+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~--A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 79 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQ--AKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHL 79 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHH--HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45677778888999999999 999999988843 45678889999999 9999999999998876 46678888
Q ss_pred HHHHHHh----CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHhhhhcCCCCChhhHHHH
Q 048364 222 LICGSAH----RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH----TGLVDEGRKYFKMIDEEYDLEPRIQHYGCM 293 (400)
Q Consensus 222 l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 293 (400)
+...|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...|++..+. + +...+..+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~l 152 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHH
Confidence 9999999 999999999999999875 67888889999999 99999999999999853 3 56678888
Q ss_pred HHHHHh----cCChHHHHHHHHhc-cCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 048364 294 VDLFGK----AGFLEEAYEVIRTM-RLEPNVIIWGSFLAACKE----HKQFDMAERVIKQALRMVKPENDGGVFTLICDL 364 (400)
Q Consensus 294 ~~~~~~----~g~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 364 (400)
...|.. .+++++|.+.|++. .. .+...+..+...|.. .+++++|...+++..+.+ + +..+..+..+
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~---~~a~~~l~~~ 227 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDL-KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-N---GGGCFNLGAM 227 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-C---HHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-C---HHHHHHHHHH
Confidence 889988 99999999999988 32 356778888899999 999999999999999987 4 6788899999
Q ss_pred hhc----ccchHHHHHHHHHHhcccc
Q 048364 365 YTM----NEKWEGAERVRKLMLNQNV 386 (400)
Q Consensus 365 ~~~----~g~~~~a~~~~~~m~~~~~ 386 (400)
|.. .+++++|.+.+++..+.+.
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 998 9999999999999987653
No 58
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.61 E-value=9.4e-13 Score=119.89 Aligned_cols=292 Identities=11% Similarity=0.000 Sum_probs=205.7
Q ss_pred chhhhhHHHHHH-HhCCHHHHHHHHhhCCC-----------C-ChhhHHHHHHHHHcCCChHHHHHHHhhCC-------C
Q 048364 50 HVYVATSLLHEY-VVTSFGFARKLFDELPE-----------R-NAVTWNTMIKGYSKSGNVCEARDFFERMP-------L 109 (400)
Q Consensus 50 ~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~-----------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~ 109 (400)
....|+.+...+ ..|++++|++.|++..+ + ...+|+.+..+|...|++++|...|++.. .
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 456788888888 99999999999987542 2 35679999999999999999999987753 1
Q ss_pred ----CChhhHHHHHHHHHhc--CCcchHHHHHHHHHhcCCCCCCH-HHHHHHHHHhh---cccchhhhhhhhhhhHHHhc
Q 048364 110 ----RNVASWSAMIAAYLNA--GAYDPGLKLFREMISNEGLTPDQ-MTIGAVLSGCS---HLGSVGLLMGKSAHGFIVKN 179 (400)
Q Consensus 110 ----~~~~~~~~l~~~~~~~--g~~~~a~~~~~~m~~~~~~~p~~-~~~~~ll~~~~---~~~~~~~~~a~~~~~~~~~~ 179 (400)
....++..+..++.+. +++++|++.|++..+ +.|+. ..+..+..++. ..++.+. +...++...+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~---~~p~~~~~~~~~~~~~~~l~~~~~~~~--al~~~~~al~l 204 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE---KKPKNPEFTSGLAIASYRLDNWPPSQN--AIDPLRQAIRL 204 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHHHSCCCCC--THHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCchHHHH--HHHHHHHHhhc
Confidence 1345666666666554 569999999999983 34543 34444444433 4455566 66667666665
Q ss_pred cccchHHHHHHHHHHHHh----cCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHH
Q 048364 180 EWELNEQIATILVDMYAK----CGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEM 252 (400)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 252 (400)
.. .+..++..+...+.. .|++++|.+.+++... .+...+..+...|...|++++|+..+++..+.. +-+..
T Consensus 205 ~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 282 (472)
T 4g1t_A 205 NP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAY 282 (472)
T ss_dssp CS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred CC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHH
Confidence 42 244555555555444 4678889999988764 355678889999999999999999999998863 22455
Q ss_pred HHHHHHHHHHhc-------------------CChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc
Q 048364 253 TFTGVLTACVHT-------------------GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 253 ~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
++..+..+|... +..+.|...++...+. .+.+...+..+...|...|++++|.+.|++.
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 666665555322 2356778888877743 2445677888999999999999999999987
Q ss_pred -cCCccHH----HHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 314 -RLEPNVI----IWGSFLA-ACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 314 -~~~p~~~----~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
...|+.. .+..+.. .....|++++|+..++++++.. |
T Consensus 361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~-~ 403 (472)
T 4g1t_A 361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN-Q 403 (472)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC-C
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-c
Confidence 4444332 2333332 3457899999999999999988 6
No 59
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=4.1e-13 Score=109.11 Aligned_cols=206 Identities=12% Similarity=-0.000 Sum_probs=152.4
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHH
Q 048364 111 NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATI 190 (400)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (400)
+...|..+...+...|++++|.+.|+++.+. .|+ +...+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~------------------------------------~~~~~~~ 47 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS---DPK------------------------------------NELAWLV 47 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT------------------------------------CHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh---Ccc------------------------------------chHHHHH
Confidence 4456666677777777777777777776621 222 2345556
Q ss_pred HHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhC-CChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 048364 191 LVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHR-GYSEDALSLFEMMQATGVKPN-EMTFTGVLTACVHTG 265 (400)
Q Consensus 191 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~ 265 (400)
+..+|...|++++|.+.++++.+ .+...+..+...+... |++++|...++++.+.+..|+ ...+..+..++...|
T Consensus 48 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 127 (225)
T 2vq2_A 48 RAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQG 127 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcC
Confidence 66777777888888888777654 3456677788888888 999999999988887333343 567788888889999
Q ss_pred ChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCC--ccHHHHHHHHHHHHhcCCHHHHHHHH
Q 048364 266 LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLE--PNVIIWGSFLAACKEHKQFDMAERVI 342 (400)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~ 342 (400)
++++|...++.+.+. .+.+...+..+..++...|++++|...+++. ... .+...+..+...+...|+.+.+..++
T Consensus 128 ~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 205 (225)
T 2vq2_A 128 QFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYE 205 (225)
T ss_dssp CHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 999999999988853 2345777888899999999999999999987 333 45667777788888999999999999
Q ss_pred HHHHHcCCCCCCchHHH
Q 048364 343 KQALRMVKPENDGGVFT 359 (400)
Q Consensus 343 ~~~~~~~~~~~~~~~~~ 359 (400)
+.+.+.. | .++....
T Consensus 206 ~~~~~~~-p-~~~~~~~ 220 (225)
T 2vq2_A 206 AQLQANF-P-YSEELQT 220 (225)
T ss_dssp HHHHHHC-T-TCHHHHH
T ss_pred HHHHHhC-C-CCHHHHH
Confidence 9998887 6 5555443
No 60
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=4.2e-14 Score=118.95 Aligned_cols=148 Identities=12% Similarity=-0.046 Sum_probs=103.7
Q ss_pred HhcccchhHHHHHHHHHHHHhCcc---cchhhhhHHHHHH-HhCCHHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCh
Q 048364 25 SCTHFNNLTVIHHLHSHILKLGFI---SHVYVATSLLHEY-VVTSFGFARKLFDELPE---RNAVTWNTMIKGYSKSGNV 97 (400)
Q Consensus 25 ~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 97 (400)
.....|++++|.+.++.+.+.... .+..++..+...+ ..|++++|...|++..+ .+..+|..+...+...|++
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 344568999999999999886421 2455677777777 88999999998888763 3567788888888888888
Q ss_pred HHHHHHHhhCC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhh
Q 048364 98 CEARDFFERMP---LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHG 174 (400)
Q Consensus 98 ~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~ 174 (400)
++|++.|++.. +.+..+|..+..+|.+.|++++|.+.|+++.+ ..|+.......+..+...|+++. |...+.
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~--A~~~~~ 168 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQ--AKEVLK 168 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHH--HHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHH--HHHHHH
Confidence 88888888765 33667888888888888888888888888872 24544433333333344444444 444443
Q ss_pred HHH
Q 048364 175 FIV 177 (400)
Q Consensus 175 ~~~ 177 (400)
...
T Consensus 169 ~~~ 171 (275)
T 1xnf_A 169 QHF 171 (275)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 61
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.57 E-value=3.3e-13 Score=119.41 Aligned_cols=290 Identities=10% Similarity=0.006 Sum_probs=157.9
Q ss_pred cccchhHHHHHHHHHHHHhC--c--ccchhhhhHHHHHH---HhCCHHHHH-----------HHHhhCCC-C-Chh----
Q 048364 27 THFNNLTVIHHLHSHILKLG--F--ISHVYVATSLLHEY---VVTSFGFAR-----------KLFDELPE-R-NAV---- 82 (400)
Q Consensus 27 ~~~g~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~~---~~g~~~~a~-----------~~~~~~~~-~-~~~---- 82 (400)
.+.+++++|.++++++.+.- + .++...|-.++..- ..+.++.+. ..++.+.. + +..
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~ 102 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLE 102 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHH
Confidence 46788999999988886652 2 22333333333321 223333333 44444321 1 111
Q ss_pred --hHHHHHHHHHcCCChHHHHHHHhhCCC-----C----ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHH
Q 048364 83 --TWNTMIKGYSKSGNVCEARDFFERMPL-----R----NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTI 151 (400)
Q Consensus 83 --~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 151 (400)
.+......+...|++++|++.|++... + ...+|..+...|...|++++|+..+++..+...-.++
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~---- 178 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA---- 178 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc----
Confidence 111233445566666666666665432 1 1245566666666666666666666665411000000
Q ss_pred HHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----cccHHHH
Q 048364 152 GAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE-----RN----VISWTAL 222 (400)
Q Consensus 152 ~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l 222 (400)
. ......+++.+..+|...|++++|...|++..+ ++ ..++..+
T Consensus 179 ------------~----------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 230 (383)
T 3ulq_A 179 ------------Y----------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNI 230 (383)
T ss_dssp ------------T----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------------c----------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 0 011234566777778888888888887776653 11 1356666
Q ss_pred HHHHHhCCChhhHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhc---CCCCChhhHHHHH
Q 048364 223 ICGSAHRGYSEDALSLFEMMQAT----GV-KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY---DLEPRIQHYGCMV 294 (400)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~ 294 (400)
...|...|++++|+..+++..+. +. +....++..+..++.+.|++++|...+++..+-. +.+.....+..+.
T Consensus 231 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~ 310 (383)
T 3ulq_A 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLK 310 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777777777777766551 22 2234556666667777777777777776655321 1111122244555
Q ss_pred HHHHhcCC---hHHHHHHHHhccCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048364 295 DLFGKAGF---LEEAYEVIRTMRLEPN-VIIWGSFLAACKEHKQFDMAERVIKQALRM 348 (400)
Q Consensus 295 ~~~~~~g~---~~~a~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (400)
..|...|+ +++|..++++.+..|+ ...+..+...|...|++++|...++++.+.
T Consensus 311 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 311 SLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 66666666 6666666666643332 234555666666666666666666666554
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.57 E-value=4.7e-14 Score=126.05 Aligned_cols=265 Identities=10% Similarity=-0.012 Sum_probs=181.5
Q ss_pred hhhhHHHHHH-HhCCHHHHHHHHhhCCC--C-Ch----hhHHHHHHHHHcCCChHHHHHHHhhCCC---------CChhh
Q 048364 52 YVATSLLHEY-VVTSFGFARKLFDELPE--R-NA----VTWNTMIKGYSKSGNVCEARDFFERMPL---------RNVAS 114 (400)
Q Consensus 52 ~~~~~l~~~~-~~g~~~~a~~~~~~~~~--~-~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~ 114 (400)
..+..+...+ ..|++++|...|++..+ | +. ..|..+...+...|++++|++.|++... ....+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3444555566 99999999999998874 3 22 4688889999999999999999988652 13457
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHH
Q 048364 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDM 194 (400)
Q Consensus 115 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (400)
+..+...|...|++++|...+++..+...-..+. .....++..+...
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------------------------------~~~~~~~~~l~~~ 175 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDR---------------------------------LSEGRALYNLGNV 175 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhch---------------------------------HHHHHHHHHHHHH
Confidence 8888899999999999999999987211000000 0122344445555
Q ss_pred HHhcCC-----------------HHHHHHHHHhccC-----C----CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCC
Q 048364 195 YAKCGF-----------------LKYALMVFELMEE-----R----NVISWTALICGSAHRGYSEDALSLFEMMQATGVK 248 (400)
Q Consensus 195 ~~~~g~-----------------~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 248 (400)
|...|+ +++|.+.+++..+ . ....+..+...|...|++++|...+++..+....
T Consensus 176 ~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 176 YHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 555555 5555555554432 1 1235666677777778888887777776543110
Q ss_pred -CC----HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC----ChhhHHHHHHHHHhcCChHHHHHHHHhc-cC---
Q 048364 249 -PN----EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP----RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RL--- 315 (400)
Q Consensus 249 -p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~--- 315 (400)
++ ...+..+...+...|++++|...+++......-.. ...++..+...|...|++++|.+.+++. .+
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 11 23667777788888888888888877664211111 1456777888888999999998888877 11
Q ss_pred ---Cc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 316 ---EP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 316 ---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
.+ ...++..+...|...|++++|...++++.+..
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 11 23467788888999999999999999998876
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.57 E-value=3.1e-13 Score=106.33 Aligned_cols=163 Identities=11% Similarity=0.036 Sum_probs=108.4
Q ss_pred cccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHH
Q 048364 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295 (400)
Q Consensus 216 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (400)
...|..+...|...|++++|+..|++..+.. +-+...+..+..++.+.|++++|...++..... .+.+...+..+..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 3456666666666666666666666666542 124556666666677777777777777766642 2334455666666
Q ss_pred HHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHH
Q 048364 296 LFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEG 373 (400)
Q Consensus 296 ~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 373 (400)
.+...++++.|.+.+.+. ...| +...+..+..++.+.|++++|+..++++++.. | .++.++..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p-~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-P-GFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-c-hhhhHHHHHHHHHHHCCCHHH
Confidence 677777777777777766 3333 45566667777777777777777777777777 6 677777777777777777777
Q ss_pred HHHHHHHHhc
Q 048364 374 AERVRKLMLN 383 (400)
Q Consensus 374 a~~~~~~m~~ 383 (400)
|.+.+++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777777665
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.55 E-value=6.4e-14 Score=127.25 Aligned_cols=193 Identities=10% Similarity=-0.030 Sum_probs=164.8
Q ss_pred chHHHHHHHHHHHHhcCCH-HHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 048364 183 LNEQIATILVDMYAKCGFL-KYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVL 258 (400)
Q Consensus 183 ~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 258 (400)
.+...+..+..+|...|++ ++|.+.|++..+ | +...|..+...|...|++++|...|++..+. .|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 3566777788888888898 999999888765 3 4668888899999999999999999998876 46778888888
Q ss_pred HHHHhc---------CChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhc--------CChHHHHHHHHhc-cCCc---
Q 048364 259 TACVHT---------GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA--------GFLEEAYEVIRTM-RLEP--- 317 (400)
Q Consensus 259 ~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~a~~~~~~~-~~~p--- 317 (400)
.++... |++++|...++++.+. .+.+...|..+..+|... |++++|.+.|++. .+.|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 889888 9999999999999853 234677888999999988 9999999999998 5556
Q ss_pred -cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHH
Q 048364 318 -NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLM 381 (400)
Q Consensus 318 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 381 (400)
+...|..+..+|...|++++|...|+++.+.. | .+..++..+..++...|++++|.+.+.++
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p-~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALD-P-AWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 67789999999999999999999999999999 8 78889999999999999999998765544
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.54 E-value=8.5e-13 Score=114.10 Aligned_cols=274 Identities=11% Similarity=-0.015 Sum_probs=141.2
Q ss_pred hHHHHHHHhcccchhHHHHHHHHHHHHhCcccc---hhhhhHHHHHH-HhCCHHHHHHHHhhCCCC---------ChhhH
Q 048364 18 SILHILKSCTHFNNLTVIHHLHSHILKLGFISH---VYVATSLLHEY-VVTSFGFARKLFDELPER---------NAVTW 84 (400)
Q Consensus 18 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~---------~~~~~ 84 (400)
.+......+...|++++|...++++.+..+... ...+..+...+ ..|++++|...+++..+. ...++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 344455666777888888888888877643311 24555566666 777777777776654320 12334
Q ss_pred HHHHHHHHcCCChHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhcCC-------------cchHHHHHHHHHhcC
Q 048364 85 NTMIKGYSKSGNVCEARDFFERMPL-----RN----VASWSAMIAAYLNAGA-------------YDPGLKLFREMISNE 142 (400)
Q Consensus 85 ~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~-------------~~~a~~~~~~m~~~~ 142 (400)
..+...+...|++++|.+.|++... ++ ..++..+...+...|+ .+++.+.
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-------- 158 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA-------- 158 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH--------
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH--------
Confidence 4444555555555555555444320 11 1234444444444444 1111111
Q ss_pred CCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhc----c-ccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcc
Q 048364 143 GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKN----E-WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVI 217 (400)
Q Consensus 143 ~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 217 (400)
++. +...+....+. + ......++..+...|...|++++|...+++..+
T Consensus 159 ---------------------~~~--A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---- 211 (338)
T 3ro2_A 159 ---------------------LQA--AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL---- 211 (338)
T ss_dssp ---------------------HHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----
T ss_pred ---------------------HHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----
Confidence 232 22222222111 0 011223444555555556666666555544332
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC----hhhHHH
Q 048364 218 SWTALICGSAHRGYSEDALSLFEMMQATGV-KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR----IQHYGC 292 (400)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 292 (400)
+... .+. .....++..+...+...|++++|...++...+...-.++ ..++..
T Consensus 212 --------------------~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 268 (338)
T 3ro2_A 212 --------------------IAKE---FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 268 (338)
T ss_dssp --------------------HHHH---HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --------------------HHHh---cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 0000 000 001224555555666666666666666655432111111 445666
Q ss_pred HHHHHHhcCChHHHHHHHHhc-cC------Cc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 293 MVDLFGKAGFLEEAYEVIRTM-RL------EP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~-~~------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
+...|...|++++|...+++. .. .+ ...++..+...|...|++++|...++++.+..
T Consensus 269 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 269 LGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 777777778877777777766 11 11 13466777888888888888888888887765
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.54 E-value=3e-13 Score=119.66 Aligned_cols=197 Identities=10% Similarity=0.007 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC-----cccHHHHHHHHHhCCChhhHHHHHHHHHHCCCC-CC---
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFELMEE-----RN-----VISWTALICGSAHRGYSEDALSLFEMMQATGVK-PN--- 250 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~--- 250 (400)
..++..+..+|...|+++.|...+++..+ ++ ..+++.+...|...|++++|...+++..+.... ++
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 222 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL 222 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH
Confidence 45677788888888999888888877764 11 246888889999999999999999988753111 11
Q ss_pred -HHHHHHHHHHHHhcCChhhHHHHHHHhhhh---cCC-CCChhhHHHHHHHHHhcCChHHHHHHHHhc-cC-----Cc-c
Q 048364 251 -EMTFTGVLTACVHTGLVDEGRKYFKMIDEE---YDL-EPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RL-----EP-N 318 (400)
Q Consensus 251 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-----~p-~ 318 (400)
..++..+..++...|++++|...+++..+- .+. +....++..+..+|.+.|++++|.+.+++. .+ .| .
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 302 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY 302 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 247888999999999999999999988741 122 234567889999999999999999999987 11 22 2
Q ss_pred HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 319 VIIWGSFLAACKEHKQ---FDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 319 ~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
...+..+...+...|+ +++|..++++. +..+....++..++..|...|++++|...+++..+.
T Consensus 303 ~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 303 LSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2346778888888998 77888887776 212145678889999999999999999999998763
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=8.9e-13 Score=103.72 Aligned_cols=164 Identities=14% Similarity=0.046 Sum_probs=142.5
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048364 184 NEQIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260 (400)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 260 (400)
++.+|..+..+|...|++++|.+.|++..+ | +..++..+..+|.+.|++++|...+.+..... +-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 567889999999999999999999999876 3 56678889999999999999999999988764 3356777778888
Q ss_pred HHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHH
Q 048364 261 CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMA 338 (400)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 338 (400)
+...++++.+...++...+. .+.+...+..+..+|.+.|++++|++.|++. ...| +..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998853 3446778889999999999999999999998 5555 567899999999999999999
Q ss_pred HHHHHHHHHcCCC
Q 048364 339 ERVIKQALRMVKP 351 (400)
Q Consensus 339 ~~~~~~~~~~~~~ 351 (400)
...|+++++.. |
T Consensus 161 ~~~~~~al~~~-p 172 (184)
T 3vtx_A 161 VKYFKKALEKE-E 172 (184)
T ss_dssp HHHHHHHHHTT-H
T ss_pred HHHHHHHHhCC-c
Confidence 99999999988 6
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.50 E-value=2.2e-11 Score=104.17 Aligned_cols=163 Identities=9% Similarity=0.037 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccC--CC-cc-cHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFELMEE--RN-VI-SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 260 (400)
...|..++..+.+.|++++|..+|++..+ |+ .. .|..++..+.+.|++++|..+|++..+.. +++...|......
T Consensus 99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~ 177 (308)
T 2ond_A 99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALM 177 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 34555666667777777888888877765 32 33 67777778888888888888888887753 2234444433332
Q ss_pred HH-hcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-c---CCcc--HHHHHHHHHHHHhcC
Q 048364 261 CV-HTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-R---LEPN--VIIWGSFLAACKEHK 333 (400)
Q Consensus 261 ~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~---~~p~--~~~~~~l~~~~~~~~ 333 (400)
.. ..|+.++|..+|+...+.. +.+...|..++..+.+.|++++|..+|++. . +.|+ ...|..++....+.|
T Consensus 178 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g 255 (308)
T 2ond_A 178 EYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 255 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 22 2688999999999888542 346678888888888999999999999888 3 3553 567888888888899
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 048364 334 QFDMAERVIKQALRMVKP 351 (400)
Q Consensus 334 ~~~~a~~~~~~~~~~~~~ 351 (400)
+.+.|..+++++.+.. |
T Consensus 256 ~~~~a~~~~~~a~~~~-p 272 (308)
T 2ond_A 256 DLASILKVEKRRFTAF-R 272 (308)
T ss_dssp CHHHHHHHHHHHHHHT-T
T ss_pred CHHHHHHHHHHHHHHc-c
Confidence 9999999999999888 6
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.49 E-value=1.3e-13 Score=118.14 Aligned_cols=238 Identities=13% Similarity=0.134 Sum_probs=113.4
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcC------CCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhcc----
Q 048364 111 NVASWSAMIAAYLNAGAYDPGLKLFREMISNE------GLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE---- 180 (400)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~------~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~---- 180 (400)
+..++..+...+...|++++|..+++++.+.. .......++..+...+...|+++. |...+..+.+..
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~--A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKD--AANLLNDALAIREKTL 103 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHh
Confidence 34577778888888888888888888887210 011112234444444444444444 444444333321
Q ss_pred ---ccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHC------CCCC-C
Q 048364 181 ---WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT------GVKP-N 250 (400)
Q Consensus 181 ---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~ 250 (400)
.+.... .+..+...|...|++++|...+++..+. +..| .
T Consensus 104 ~~~~~~~~~-------------------------------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 152 (311)
T 3nf1_A 104 GKDHPAVAA-------------------------------TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDV 152 (311)
T ss_dssp CTTCHHHHH-------------------------------HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCChHHHH-------------------------------HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 111223 3444455555555555555555554432 1111 2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhhhc-----CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-cC--------
Q 048364 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEY-----DLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RL-------- 315 (400)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-------- 315 (400)
...+..+...+...|++++|..+++.+.+.. +..| ...++..+..+|...|++++|.+.++++ ..
T Consensus 153 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 232 (311)
T 3nf1_A 153 AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGS 232 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 2344555555556666666666655554310 0011 2334555556666666666666666554 11
Q ss_pred -Cc-------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 316 -EP-------NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 316 -~p-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
.| ....+..+...+...+.+.++...++...... | ....++..++.+|...|++++|.+.+++..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 233 VDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-P-TVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----CCHHHHHHHHHHC-------CCSCCCC---------C-H-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-c-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 01 11112222233334445555555566555554 4 5566667777777777777777777766654
No 70
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.48 E-value=2e-11 Score=107.79 Aligned_cols=127 Identities=10% Similarity=-0.006 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhhh---cCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-------cCCccHHHH
Q 048364 253 TFTGVLTACVHTGLVDEGRKYFKMIDEE---YDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-------RLEPNVIIW 322 (400)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~p~~~~~ 322 (400)
++..+..++...|++++|...+++..+- .+.+....++..+...|.+.|++++|...+++. +.+.....+
T Consensus 224 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 303 (378)
T 3q15_A 224 SLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELF 303 (378)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3444444555555555555555444420 011112344444555555555555555555544 111112233
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 323 GSFLAACKEHKQ---FDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 323 ~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
..+...+...++ +.+|...+++. +..+.....+..++..|...|++++|...+++..
T Consensus 304 ~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 304 LFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444444444 44444444431 1110233344455555555555555555555544
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.47 E-value=2.7e-12 Score=100.73 Aligned_cols=129 Identities=19% Similarity=0.101 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cC-CccHHHHHHHHHH
Q 048364 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RL-EPNVIIWGSFLAA 328 (400)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-~p~~~~~~~l~~~ 328 (400)
...+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.++++ .. +.+...+..+...
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 119 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVA 119 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHH
Confidence 334444444445555555555555554432 1223444555555555555566655555555 22 2244555666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 329 CKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 329 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
+...|++++|...++++.+.. | .+..++..++.++...|++++|...+++..+
T Consensus 120 ~~~~~~~~~A~~~~~~~~~~~-~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 120 LDNLGRFDEAIDSFKIALGLR-P-NEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHhcC-c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666766666666666 5 5566666666666667777777766666654
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.45 E-value=2.3e-12 Score=121.80 Aligned_cols=162 Identities=12% Similarity=0.124 Sum_probs=110.4
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHH
Q 048364 217 ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296 (400)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 296 (400)
.+|+.+...|.+.|++++|+..|++..+.. +-+..++..+..++.+.|++++|+..|++..+. -+.+...|..+..+
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 455666666666666666666666666542 113556666777777777777777777776632 12245667777777
Q ss_pred HHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHH
Q 048364 297 FGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGA 374 (400)
Q Consensus 297 ~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 374 (400)
|...|++++|++.|++. .+.| +...|+.+..+|...|++++|+..|+++++.. | .+..++..++.+|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P-~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-P-DFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-S-CCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C-CChHHHhhhhhHHHhcccHHHH
Confidence 77777777777777776 4455 45567777777777777777777777777777 7 6777777777777777777777
Q ss_pred HHHHHHHhc
Q 048364 375 ERVRKLMLN 383 (400)
Q Consensus 375 ~~~~~~m~~ 383 (400)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.44 E-value=1.1e-11 Score=109.36 Aligned_cols=304 Identities=10% Similarity=0.042 Sum_probs=183.2
Q ss_pred CCCCchhHHHHHHHh--cccchhHHHHHHHHHHHHhC--cc--cchhhhhHHHHHH---HhCCHHHHH---------HHH
Q 048364 12 VPSDSFSILHILKSC--THFNNLTVIHHLHSHILKLG--FI--SHVYVATSLLHEY---VVTSFGFAR---------KLF 73 (400)
Q Consensus 12 ~~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~--~~--~~~~~~~~l~~~~---~~g~~~~a~---------~~~ 73 (400)
+.|+...-..|-..+ .+.+++++|.++++++.+.. +. .+...|-.++..- ..+.++.+. ..+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 345555555566665 67788888888888876642 21 2233333333321 222222222 333
Q ss_pred hhCCC---CCh-----hhHHHHHHHHHcCCChHHHHHHHhhCCC-----C----ChhhHHHHHHHHHhcCCcchHHHHHH
Q 048364 74 DELPE---RNA-----VTWNTMIKGYSKSGNVCEARDFFERMPL-----R----NVASWSAMIAAYLNAGAYDPGLKLFR 136 (400)
Q Consensus 74 ~~~~~---~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 136 (400)
+.+.. +.. ..+......+...|++++|+..|++... + ...++..+..+|...|+++.|...++
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 33221 100 0112223334455666666666555431 1 12345555555566666666665555
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHhccC--
Q 048364 137 EMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE-LNEQIATILVDMYAKCGFLKYALMVFELMEE-- 213 (400)
Q Consensus 137 ~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 213 (400)
+......-.++ .. ....+++.+..+|...|++++|...|++..+
T Consensus 166 ~al~~~~~~~~---------------------------------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 212 (378)
T 3q15_A 166 QALDIYQNHPL---------------------------------YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELA 212 (378)
T ss_dssp HHHHHHHTSTT---------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC---------------------------------chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 54411000000 01 1245667777888888888888888776654
Q ss_pred ---CC----cccHHHHHHHHHhCCChhhHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhc
Q 048364 214 ---RN----VISWTALICGSAHRGYSEDALSLFEMMQA-----TGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY 281 (400)
Q Consensus 214 ---~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 281 (400)
++ ..+++.+...|...|++++|+..+++... .. +....++..+..++.+.|++++|...+++..+-.
T Consensus 213 ~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 291 (378)
T 3q15_A 213 MDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHI 291 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 11 24577788888888999999888888776 32 2236778888889999999999999999887543
Q ss_pred CCCC---ChhhHHHHHHHHHhcCC---hHHHHHHHHhccCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 282 DLEP---RIQHYGCMVDLFGKAGF---LEEAYEVIRTMRLEPNV-IIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 282 ~~~~---~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
.-.+ ....+..+...|...++ +.+|...+++.+..|+. ..+..+...|...|++++|...++++.+..
T Consensus 292 ~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 292 TARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp CTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 2212 23445666677778888 88899999887544433 466788889999999999999999887643
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.44 E-value=1.3e-10 Score=102.36 Aligned_cols=52 Identities=15% Similarity=0.032 Sum_probs=28.3
Q ss_pred HHHHHcCCChHHHHHHHhhCC---C-CCh----hhHHHHHHHHHhcCCcchHHHHHHHHH
Q 048364 88 IKGYSKSGNVCEARDFFERMP---L-RNV----ASWSAMIAAYLNAGAYDPGLKLFREMI 139 (400)
Q Consensus 88 ~~~~~~~~~~~~a~~~~~~~~---~-~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~ 139 (400)
...+...|++++|...+++.. + .+. .+++.+...+...|++++|.+.+++..
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 80 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE 80 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 334455666666666655532 1 111 134445555666666666666666665
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.42 E-value=6.3e-13 Score=113.76 Aligned_cols=237 Identities=11% Similarity=0.057 Sum_probs=142.2
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHhhCCC--------C---ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcC-----C
Q 048364 80 NAVTWNTMIKGYSKSGNVCEARDFFERMPL--------R---NVASWSAMIAAYLNAGAYDPGLKLFREMISNE-----G 143 (400)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-----~ 143 (400)
+..++..+...+...|++++|..+|+++.. . ...++..+...|...|++++|...+++..... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456788899999999999999999988753 2 34578889999999999999999999998331 1
Q ss_pred CCC-CHHHHHHHHHHhhcccchhhhhhhhhhhHHHhcc------c-cchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCC
Q 048364 144 LTP-DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE------W-ELNEQIATILVDMYAKCGFLKYALMVFELMEERN 215 (400)
Q Consensus 144 ~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 215 (400)
-.| ...++..+...+...|+++. |...+..+.+.. . .....++.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------------------- 157 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKE--AEPLCKRALEIREKVLGKDHPDVAKQLN-------------------------- 157 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHH--HHHHHHHHHHHHHHHHCTTCHHHHHHHH--------------------------
T ss_pred CChHHHHHHHHHHHHHHHcCcHHH--HHHHHHHHHHHHHHhcCCCChHHHHHHH--------------------------
Confidence 122 34466677777777777777 666666655431 1 11223334
Q ss_pred cccHHHHHHHHHhCCChhhHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhc------C
Q 048364 216 VISWTALICGSAHRGYSEDALSLFEMMQAT------GVKP-NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY------D 282 (400)
Q Consensus 216 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~ 282 (400)
.+...+...|++++|...++++... +..| ...++..+..++...|++++|...++++.+.. .
T Consensus 158 -----~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 232 (311)
T 3nf1_A 158 -----NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGS 232 (311)
T ss_dssp -----HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -----HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 4444455555555555555544432 1122 22455666666677777777777776665310 1
Q ss_pred CCCCh-hh------HHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 283 LEPRI-QH------YGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 283 ~~~~~-~~------~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
..+.. .. +..+...+...+.+.++...++.. ...| +..++..+..+|.+.|++++|...++++++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 233 VDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp -----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 11111 11 222222333445555566666666 2334 45678889999999999999999999988765
No 76
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.42 E-value=4.4e-11 Score=102.31 Aligned_cols=197 Identities=12% Similarity=0.071 Sum_probs=153.6
Q ss_pred hHHHHHHHHHHHH-------hcCCH-------HHHHHHHHhccC---C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHC
Q 048364 184 NEQIATILVDMYA-------KCGFL-------KYALMVFELMEE---R-NVISWTALICGSAHRGYSEDALSLFEMMQAT 245 (400)
Q Consensus 184 ~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 245 (400)
++..|..++..+. +.|++ ++|..+|++..+ | +...|..++..+.+.|++++|..+|++..+.
T Consensus 49 ~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 128 (308)
T 2ond_A 49 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 128 (308)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 3444555554443 35775 899999998875 3 3457889999999999999999999999985
Q ss_pred CCCCC-HH-HHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHH-hcCChHHHHHHHHhc-cCCc-cHH
Q 048364 246 GVKPN-EM-TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG-KAGFLEEAYEVIRTM-RLEP-NVI 320 (400)
Q Consensus 246 ~~~p~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~-~~~p-~~~ 320 (400)
.|+ .. .|..+...+.+.|++++|..+|++..+. .+++...|...+.... ..|++++|.++|++. ...| +..
T Consensus 129 --~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 204 (308)
T 2ond_A 129 --EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPE 204 (308)
T ss_dssp --SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred --cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 454 33 7888999999999999999999999842 2334555544433322 379999999999988 3334 567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-C-CCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 321 IWGSFLAACKEHKQFDMAERVIKQALRMV-K-PENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 321 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
.|..++..+.+.|++++|..+|++++... . |......|..++..+.+.|+.++|..+++++.+.
T Consensus 205 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 205 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88999999999999999999999999963 1 3225678888899999999999999999998764
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.41 E-value=2.4e-11 Score=95.22 Aligned_cols=163 Identities=15% Similarity=0.038 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccCC---CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFELMEER---NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 261 (400)
...+..+...+...|++++|...++++.+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 456677888899999999999999998862 45678888899999999999999999998763 34677888899999
Q ss_pred HhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHH
Q 048364 262 VHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAE 339 (400)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 339 (400)
...|++++|.+.++.+.+. .+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999853 3456778889999999999999999999998 3334 5678899999999999999999
Q ss_pred HHHHHHHHcCCC
Q 048364 340 RVIKQALRMVKP 351 (400)
Q Consensus 340 ~~~~~~~~~~~~ 351 (400)
..++++.+.. |
T Consensus 165 ~~~~~~~~~~-~ 175 (186)
T 3as5_A 165 PHFKKANELD-E 175 (186)
T ss_dssp HHHHHHHHHH-H
T ss_pred HHHHHHHHcC-C
Confidence 9999999887 6
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.41 E-value=3.6e-11 Score=97.99 Aligned_cols=143 Identities=10% Similarity=-0.072 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccC----CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048364 186 QIATILVDMYAKCGFLKYALMVFELMEE----RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261 (400)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 261 (400)
..+......+...|++++|...|++..+ ++...+..+..++...|++++|+..+++..+... -+...+..+..++
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 86 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHHHH
Confidence 3444445555555555555555554432 2333344445555555555555555555554321 1234445555555
Q ss_pred HhcCChhhHHHHHHHhhhhcCCCCCh-------hhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc---HHHHHHHHHHHH
Q 048364 262 VHTGLVDEGRKYFKMIDEEYDLEPRI-------QHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN---VIIWGSFLAACK 330 (400)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~---~~~~~~l~~~~~ 330 (400)
...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.|++. ...|+ ...+..+..+|.
T Consensus 87 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 55555555555555555321 1122 23444555555555555555555555 44443 234444444444
Q ss_pred h
Q 048364 331 E 331 (400)
Q Consensus 331 ~ 331 (400)
.
T Consensus 165 ~ 165 (228)
T 4i17_A 165 N 165 (228)
T ss_dssp H
T ss_pred H
Confidence 3
No 79
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.39 E-value=8.4e-12 Score=113.34 Aligned_cols=188 Identities=11% Similarity=-0.086 Sum_probs=128.4
Q ss_pred HHHHHHHHhhcccch-hhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CCcccHHHHHHHH
Q 048364 150 TIGAVLSGCSHLGSV-GLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--RNVISWTALICGS 226 (400)
Q Consensus 150 ~~~~ll~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~ 226 (400)
.+..+..++...|++ ++ |...++.+.+.. +.+...+..+..+|...|++++|.+.|++..+ |+...+..+...+
T Consensus 104 ~~~~lg~~~~~~g~~~~~--A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~ 180 (474)
T 4abn_A 104 ALMLKGKALNVTPDYSPE--AEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVL 180 (474)
T ss_dssp HHHHHHHHHTSSSSCCHH--HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHH--HHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 333344444444444 44 444444443332 11345666777777777888888888877765 5556667777777
Q ss_pred HhC---------CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CChhhHHHHHHHhhhhcCCC---CC
Q 048364 227 AHR---------GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT--------GLVDEGRKYFKMIDEEYDLE---PR 286 (400)
Q Consensus 227 ~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~---~~ 286 (400)
... |++++|+..|++..+.. +-+...+..+..++... |++++|...|++..+. .+ .+
T Consensus 181 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 257 (474)
T 4abn_A 181 RQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSN 257 (474)
T ss_dssp TTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGC
T ss_pred HHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccC
Confidence 777 88888888888887763 22567777888888877 8888888888888753 12 36
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048364 287 IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIK 343 (400)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 343 (400)
...|..+..+|...|++++|.+.|++. ...| +...+..+..++...|++++|...+.
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 677888888888888888888888887 4445 45567777788888888888776543
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.38 E-value=1.4e-10 Score=102.00 Aligned_cols=260 Identities=12% Similarity=-0.006 Sum_probs=165.4
Q ss_pred HHHH-HhCCHHHHHHHHhhCCC----CCh----hhHHHHHHHHHcCCChHHHHHHHhhCCC-----CCh----hhHHHHH
Q 048364 58 LHEY-VVTSFGFARKLFDELPE----RNA----VTWNTMIKGYSKSGNVCEARDFFERMPL-----RNV----ASWSAMI 119 (400)
Q Consensus 58 ~~~~-~~g~~~~a~~~~~~~~~----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~----~~~~~l~ 119 (400)
...+ ..|++++|...+++... .+. .+++.+...+...|++++|.+.+++... .+. .++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3344 88999999999877542 222 2456677788889999999999988652 222 2356677
Q ss_pred HHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcC
Q 048364 120 AAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCG 199 (400)
Q Consensus 120 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 199 (400)
..+...|++++|.+.+++......- .+... .+.....+..+...+...|
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~----------------~~~~~---------------~~~~~~~~~~la~~~~~~g 149 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINE----------------QHLEQ---------------LPMHEFLVRIRAQLLWAWA 149 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH----------------TTCTT---------------STHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHH----------------hcccc---------------CcHHHHHHHHHHHHHHHhc
Confidence 8888999999999999888721100 00000 0012234455666677777
Q ss_pred CHHHHHHHHHhccC--C------CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHhcC
Q 048364 200 FLKYALMVFELMEE--R------NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN--EMTFT----GVLTACVHTG 265 (400)
Q Consensus 200 ~~~~A~~~~~~~~~--~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~----~l~~~~~~~~ 265 (400)
++++|...+++..+ + ...++..+...+...|++++|...+++.......++ ..... ..+..+...|
T Consensus 150 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 229 (373)
T 1hz4_A 150 RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 229 (373)
T ss_dssp CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCC
Confidence 77777777766543 1 113456666777788888888888877754311111 11111 2233466788
Q ss_pred ChhhHHHHHHHhhhhcCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHhc-------cCCccH-HHHHHHHHHHHhcCC
Q 048364 266 LVDEGRKYFKMIDEEYDLEPR---IQHYGCMVDLFGKAGFLEEAYEVIRTM-------RLEPNV-IIWGSFLAACKEHKQ 334 (400)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~p~~-~~~~~l~~~~~~~~~ 334 (400)
++++|...++..... ...+. ...+..+...+...|++++|...+++. +..++. ..+..+..++...|+
T Consensus 230 ~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 308 (373)
T 1hz4_A 230 DKAAAANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 308 (373)
T ss_dssp CHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHhCCCC-CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCC
Confidence 888888888877632 11111 123566777888888888888888776 111222 256666777888888
Q ss_pred HHHHHHHHHHHHHcC
Q 048364 335 FDMAERVIKQALRMV 349 (400)
Q Consensus 335 ~~~a~~~~~~~~~~~ 349 (400)
.++|...+++.....
T Consensus 309 ~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 309 KSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888888887654
No 81
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.38 E-value=2.1e-09 Score=100.56 Aligned_cols=134 Identities=10% Similarity=0.119 Sum_probs=96.3
Q ss_pred hHHHHhCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCC---HHHHHHHHhhCCC-
Q 048364 4 FSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTS---FGFARKLFDELPE- 78 (400)
Q Consensus 4 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~---~~~a~~~~~~~~~- 78 (400)
|+.-...+ +-|..+|..++..+.+.+.++.+..+|+.++..- +.+...|...+..- +.|. ++.+..+|++...
T Consensus 55 lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~ 132 (679)
T 4e6h_A 55 LNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSK 132 (679)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHh
Confidence 34444444 5689999999999999999999999999999863 33566788888887 8888 9999999999874
Q ss_pred ----CChhhHHHHHHHHHcCCCh--------HHHHHHHhhCC------CC-ChhhHHHHHHHHH---------hcCCcch
Q 048364 79 ----RNAVTWNTMIKGYSKSGNV--------CEARDFFERMP------LR-NVASWSAMIAAYL---------NAGAYDP 130 (400)
Q Consensus 79 ----~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~------~~-~~~~~~~l~~~~~---------~~g~~~~ 130 (400)
|++..|...+....+.++. +.+.++|++.. .+ +...|...+.... ..++++.
T Consensus 133 ~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~ 212 (679)
T 4e6h_A 133 ELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQY 212 (679)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHH
Confidence 6777888888776665543 33446776532 23 3457777665433 2345778
Q ss_pred HHHHHHHHH
Q 048364 131 GLKLFREMI 139 (400)
Q Consensus 131 a~~~~~~m~ 139 (400)
+..+|+..+
T Consensus 213 ~R~iy~raL 221 (679)
T 4e6h_A 213 IRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 889999887
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.37 E-value=2.7e-11 Score=98.70 Aligned_cols=166 Identities=10% Similarity=-0.024 Sum_probs=142.6
Q ss_pred CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHH
Q 048364 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMV 294 (400)
Q Consensus 215 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 294 (400)
|+..+......+...|++++|+..|++..+....++...+..+..++...|++++|...+++..+ ..+.+...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 45677888889999999999999999999875446777888899999999999999999999985 2233567889999
Q ss_pred HHHHhcCChHHHHHHHHhc-cCCcc-H-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--CchHHHHHHH
Q 048364 295 DLFGKAGFLEEAYEVIRTM-RLEPN-V-------IIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN--DGGVFTLICD 363 (400)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~-~~~p~-~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~ 363 (400)
.+|...|++++|.+.+++. ...|+ . ..|..+...+...|++++|+..++++++.. | . +..++..++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p-~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-S-KKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-C-HHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-C-CcccHHHHHHHHH
Confidence 9999999999999999998 44453 3 457888888999999999999999999998 8 7 7889999999
Q ss_pred Hhhcccch---------------------------HHHHHHHHHHhcc
Q 048364 364 LYTMNEKW---------------------------EGAERVRKLMLNQ 384 (400)
Q Consensus 364 ~~~~~g~~---------------------------~~a~~~~~~m~~~ 384 (400)
+|...|+. ++|...+++..+.
T Consensus 162 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99988888 8898888888763
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.33 E-value=4.3e-11 Score=113.21 Aligned_cols=163 Identities=11% Similarity=0.085 Sum_probs=140.8
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048364 184 NEQIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260 (400)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 260 (400)
+...++.|..+|.+.|++++|.+.|++..+ | +..+|+.+..+|.+.|++++|+..|++..+... -+...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 567889999999999999999999998876 3 467889999999999999999999999988632 256889999999
Q ss_pred HHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHH
Q 048364 261 CVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMA 338 (400)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 338 (400)
+.+.|++++|++.|++..+- -+.+...|..+..+|...|++++|++.|++. .+.| +...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 99999999999999999853 2335788999999999999999999999998 6667 466889999999999999999
Q ss_pred HHHHHHHHHcC
Q 048364 339 ERVIKQALRMV 349 (400)
Q Consensus 339 ~~~~~~~~~~~ 349 (400)
.+.++++++..
T Consensus 165 ~~~~~kal~l~ 175 (723)
T 4gyw_A 165 DERMKKLVSIV 175 (723)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99998887643
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.33 E-value=4.3e-11 Score=100.64 Aligned_cols=221 Identities=15% Similarity=0.140 Sum_probs=145.3
Q ss_pred hcccchhhhhhhhhhhHHHhc-------cccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCC-----------CcccHH
Q 048364 159 SHLGSVGLLMGKSAHGFIVKN-------EWELNEQIATILVDMYAKCGFLKYALMVFELMEER-----------NVISWT 220 (400)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~ 220 (400)
...|+++. |...++...+. ..+....++..+..+|...|++++|...+++..+. ...++.
T Consensus 12 ~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 12 SGLVPRGS--AVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp -CCSCSSS--HHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred CCCCCHHH--HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 34566776 77777666552 22345677888888899999999999888876531 234677
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhc-----CCCC-Ch
Q 048364 221 ALICGSAHRGYSEDALSLFEMMQAT------GVKP-NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY-----DLEP-RI 287 (400)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~ 287 (400)
.+...|...|++++|...+++.... ...| ...++..+...+...|++++|..+++++.+.. +..| ..
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 7888888899999999988887664 1112 34667778888888899999998888877430 1122 34
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhc-c---------CCcc-HHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCC
Q 048364 288 QHYGCMVDLFGKAGFLEEAYEVIRTM-R---------LEPN-VIIWGSFLAACKEHKQ------FDMAERVIKQALRMVK 350 (400)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~-~---------~~p~-~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~ 350 (400)
.++..+..+|...|++++|.+.+++. . ..+. ...+..+...+...+. +..+...++......
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 248 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS- 248 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC-
Confidence 56778888888889999888888876 1 1222 2233333333333222 222222222221121
Q ss_pred CCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 351 PENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 351 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
| ....++..++.+|...|++++|..++++..+
T Consensus 249 ~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 249 P-TVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp H-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred H-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 4566888999999999999999999998875
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.29 E-value=5.4e-11 Score=100.05 Aligned_cols=224 Identities=10% Similarity=0.007 Sum_probs=159.0
Q ss_pred HhcCCcchHHHHHHHHHhc------CCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhcc-------ccchHHHHH
Q 048364 123 LNAGAYDPGLKLFREMISN------EGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNE-------WELNEQIAT 189 (400)
Q Consensus 123 ~~~g~~~~a~~~~~~m~~~------~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~ 189 (400)
...|++++|+.+|++..+. ...+....++..+...+...|+++. |...+..+.+.. .+....++.
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKE--AAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHH--HHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 4567888888888777631 1112235578889999999999999 999999887652 233567889
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC-------C----CcccHHHHHHHHHhCCChhhHHHHHHHHHHC------CCCC-CH
Q 048364 190 ILVDMYAKCGFLKYALMVFELMEE-------R----NVISWTALICGSAHRGYSEDALSLFEMMQAT------GVKP-NE 251 (400)
Q Consensus 190 ~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~ 251 (400)
.+..+|...|++++|...|++..+ + ...++..+...|...|++++|...+++..+. +..| ..
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 999999999999999999988764 1 2356888899999999999999999998765 1133 34
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhhhc------CCCCC-hhhHHHHHHHHHhcC------ChHHHHHHHHhcc-CCc
Q 048364 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEY------DLEPR-IQHYGCMVDLFGKAG------FLEEAYEVIRTMR-LEP 317 (400)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~-~~~~~~l~~~~~~~g------~~~~a~~~~~~~~-~~p 317 (400)
.++..+..++...|++++|..+++++.+.. ...+. ...+..+...+...+ .+..+...++..+ ..|
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCH
Confidence 678889999999999999999999887531 12232 333444444444333 2444455555552 334
Q ss_pred -cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048364 318 -NVIIWGSFLAACKEHKQFDMAERVIKQALRM 348 (400)
Q Consensus 318 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (400)
...++..+...|...|++++|..+++++++.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457888999999999999999999998764
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.27 E-value=7.9e-10 Score=92.20 Aligned_cols=244 Identities=10% Similarity=0.012 Sum_probs=160.3
Q ss_pred HHHHHcCCChHHHHHHHhhCCCCChh-hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhh
Q 048364 88 IKGYSKSGNVCEARDFFERMPLRNVA-SWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGL 166 (400)
Q Consensus 88 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 166 (400)
++-..-.|++..++.-...+...+.. .-.-+.++|...|+++... .-.|....+..+..-+ .. .
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~----------~~~~~~~a~~~la~~~-~~----~ 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD----------PTSKLGKVLDLYVQFL-DT----K 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC----------SSSTTHHHHHHHHHHH-TT----T
T ss_pred HHHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC----------CCCHHHHHHHHHHHHh-cc----c
Confidence 34455678999988877766543333 2333558888888887521 2234433433333333 21 2
Q ss_pred hhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCC-----CcccHHHHHHHHHhCCChhhHHHHHHH
Q 048364 167 LMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER-----NVISWTALICGSAHRGYSEDALSLFEM 241 (400)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 241 (400)
+...++...+.+ .++...+..+..++...|++++|++++.+.... +...+...+..+.+.|+.+.|.+.+++
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 455555555544 344455567888888999999999999887543 344566778889999999999999999
Q ss_pred HHHCCCCC-----CHHHHHHHHHH--HHhcC--ChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHh
Q 048364 242 MQATGVKP-----NEMTFTGVLTA--CVHTG--LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312 (400)
Q Consensus 242 m~~~~~~p-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 312 (400)
|.+. .| +..+...+..+ ....| +..+|..+|+++..+ .|+...-..+..++.+.|++++|.+.++.
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8775 55 35556666655 33334 889999999998743 34422333344488889999999999886
Q ss_pred c-cC-----------CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHH
Q 048364 313 M-RL-----------EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358 (400)
Q Consensus 313 ~-~~-----------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 358 (400)
+ .. +.|..+...+|......|+ +|.++++++.+.. | .++.+.
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~-P-~hp~i~ 290 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD-H-EHAFIK 290 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT-C-CCHHHH
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC-C-CChHHH
Confidence 5 22 2356666566666666776 7889999999988 7 555443
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.26 E-value=1.3e-08 Score=84.84 Aligned_cols=173 Identities=9% Similarity=0.008 Sum_probs=92.6
Q ss_pred HHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHhhh
Q 048364 204 ALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVK-PNEMTFTGVLTACVHTGLVDEGRKYFKMIDE 279 (400)
Q Consensus 204 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (400)
|...|++..+ ++..++..+..++...|++++|++++.+....|.. -+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4555555443 23333445556666666666666666665544321 2345555666666666666666666666653
Q ss_pred hcCCCC-----ChhhHHHHHHHH--HhcC--ChHHHHHHHHhc-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 048364 280 EYDLEP-----RIQHYGCMVDLF--GKAG--FLEEAYEVIRTM-RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRM- 348 (400)
Q Consensus 280 ~~~~~~-----~~~~~~~l~~~~--~~~g--~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 348 (400)
. .| +..+...++.++ ...| ++.+|..+|+++ ...|+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2 34 234444444442 2223 666666666666 33344222233333566666666666666655543
Q ss_pred ---------CCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 349 ---------VKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 349 ---------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
. | .++.++..++......|+ +|.++++++.+
T Consensus 242 p~~~~k~~~~-p-~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 242 YSVEQKENAV-L-YKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHTTTCHHHH-S-SHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred ccccccccCC-C-CCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 2 3 456666555555544554 55666666554
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.25 E-value=8.5e-10 Score=93.48 Aligned_cols=208 Identities=13% Similarity=0.077 Sum_probs=124.7
Q ss_pred CHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChHHHHHHHhhCCC-------C--ChhhHHHHHHHHHhcCCcchHHHHH
Q 048364 65 SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPL-------R--NVASWSAMIAAYLNAGAYDPGLKLF 135 (400)
Q Consensus 65 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~--~~~~~~~l~~~~~~~g~~~~a~~~~ 135 (400)
++++|...|++. ...|...|++++|++.|++... + ...+|+.+..+|.+.|++++|+..|
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467777766554 4556677777777777765431 1 1346777777777777777777777
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhc-CCHHHHHHHHHhccC-
Q 048364 136 REMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC-GFLKYALMVFELMEE- 213 (400)
Q Consensus 136 ~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~- 213 (400)
++..+- +...|+... ...+++.+..+|... |++++|...|++..+
T Consensus 101 ~~Al~l----------------~~~~g~~~~-----------------~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~ 147 (292)
T 1qqe_A 101 ENAIQI----------------FTHRGQFRR-----------------GANFKFELGEILENDLHDYAKAIDCYELAGEW 147 (292)
T ss_dssp HHHHHH----------------HHHTTCHHH-----------------HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHH----------------HHHcCCHHH-----------------HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 776510 111122211 234566777778885 888888888877654
Q ss_pred -C---C----cccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChhhHHHHHHHhhh
Q 048364 214 -R---N----VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNE------MTFTGVLTACVHTGLVDEGRKYFKMIDE 279 (400)
Q Consensus 214 -~---~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (400)
| + ..+++.+...+.+.|++++|+..|++..+....... ..+..+..++...|++++|...+++..+
T Consensus 148 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 148 YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 1 234666777777777888888777777765322211 1455666667777777777777777762
Q ss_pred hcCCCCChh------hHHHHHHHHH--hcCChHHHHHHHHhc-cCCccH
Q 048364 280 EYDLEPRIQ------HYGCMVDLFG--KAGFLEEAYEVIRTM-RLEPNV 319 (400)
Q Consensus 280 ~~~~~~~~~------~~~~l~~~~~--~~g~~~~a~~~~~~~-~~~p~~ 319 (400)
+.|+.. .+..++.+|. ..+++++|+..|+.+ .+.|+.
T Consensus 228 ---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 228 ---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp ---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred ---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 233211 2333444443 345677777777666 445543
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.25 E-value=3.7e-10 Score=94.06 Aligned_cols=186 Identities=13% Similarity=0.018 Sum_probs=134.1
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CC----cccHHHHHHHHHhCCChhhHHHHHHHHHHCCC-CCC-HHHHH
Q 048364 184 NEQIATILVDMYAKCGFLKYALMVFELMEE--RN----VISWTALICGSAHRGYSEDALSLFEMMQATGV-KPN-EMTFT 255 (400)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~-~~~~~ 255 (400)
+...+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 455666777888889999999999988876 32 34677788888899999999999998887532 122 35566
Q ss_pred HHHHHHHh--------cCChhhHHHHHHHhhhhcCCCCChhhH-----------------HHHHHHHHhcCChHHHHHHH
Q 048364 256 GVLTACVH--------TGLVDEGRKYFKMIDEEYDLEPRIQHY-----------------GCMVDLFGKAGFLEEAYEVI 310 (400)
Q Consensus 256 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~a~~~~ 310 (400)
.+..++.. .|++++|...|+++.+.. +.+.... ..+..+|.+.|++++|...|
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 77777777 889999999999888642 2222333 45678889999999999999
Q ss_pred Hhc-cCCcc----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCCCc---hHHHHHHHHhhcccchH
Q 048364 311 RTM-RLEPN----VIIWGSFLAACKEH----------KQFDMAERVIKQALRMVKPENDG---GVFTLICDLYTMNEKWE 372 (400)
Q Consensus 311 ~~~-~~~p~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~ 372 (400)
+++ ...|+ ...+..+..+|... |++++|...++++++.. | .++ .+...+...+...|+++
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~-p-~~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF-P-DSPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC-T-TCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC-C-CChHHHHHHHHHHHHHHHHHHhh
Confidence 988 33443 44677777788766 88899999999999988 7 443 33444444555555544
Q ss_pred H
Q 048364 373 G 373 (400)
Q Consensus 373 ~ 373 (400)
+
T Consensus 250 ~ 250 (261)
T 3qky_A 250 G 250 (261)
T ss_dssp T
T ss_pred h
Confidence 4
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.24 E-value=5.8e-10 Score=94.52 Aligned_cols=210 Identities=11% Similarity=-0.032 Sum_probs=137.9
Q ss_pred ChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhH
Q 048364 96 NVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGF 175 (400)
Q Consensus 96 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~ 175 (400)
++++|...|++. ...|...|++++|.+.|.+.... +.+.|+..
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~----------------~~~~~~~~---------- 74 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADY----------------QKKAGNED---------- 74 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHH----------------HHHTTCHH----------
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHH----------------HHHhCCHH----------
Confidence 477777777654 55677788888888888877511 00111111
Q ss_pred HHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----cccHHHHHHHHHhC-CChhhHHHHHHHHHHC
Q 048364 176 IVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE-----RN----VISWTALICGSAHR-GYSEDALSLFEMMQAT 245 (400)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~ 245 (400)
....+++.+..+|...|++++|...|++..+ .+ ..+++.+...|... |++++|+..|++..+.
T Consensus 75 -------~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~ 147 (292)
T 1qqe_A 75 -------EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW 147 (292)
T ss_dssp -------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 1234566677777777888877777776654 11 24677788888886 9999999999887763
Q ss_pred CCCC-C----HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCCh-----hhHHHHHHHHHhcCChHHHHHHHHhc-c
Q 048364 246 GVKP-N----EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRI-----QHYGCMVDLFGKAGFLEEAYEVIRTM-R 314 (400)
Q Consensus 246 ~~~p-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~-~ 314 (400)
.... + ..++..+...+.+.|++++|...|++..+...-.+.. ..|..+..++...|++++|...|++. .
T Consensus 148 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 148 YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1110 1 3467788888999999999999999888532111221 14677788888999999999999888 5
Q ss_pred CCccHH------HHHHHHHHHH--hcCCHHHHHHHHHHHHHcC
Q 048364 315 LEPNVI------IWGSFLAACK--EHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 315 ~~p~~~------~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~ 349 (400)
+.|+.. .+..++.++. ..+++++|...|+++....
T Consensus 228 l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~ 270 (292)
T 1qqe_A 228 EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (292)
T ss_dssp C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccH
Confidence 555432 2344555554 4566888888887765555
No 91
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.22 E-value=6.9e-08 Score=90.46 Aligned_cols=349 Identities=9% Similarity=0.060 Sum_probs=215.3
Q ss_pred hHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC---CChhhHHHHHHHHHcCCC---hHHHHHHH
Q 048364 32 LTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE---RNAVTWNTMIKGYSKSGN---VCEARDFF 104 (400)
Q Consensus 32 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~---~~~a~~~~ 104 (400)
.......++..+...+ -|...|..++..+ ..+.++.+..+|+.+.. .....|...+..-.+.++ ++.+.++|
T Consensus 48 ~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 3445556677766654 3888999999999 99999999999999874 356678888888888888 99999999
Q ss_pred hhCC--C---CChhhHHHHHHHHHhcCCc--------chHHHHHHHHHhcCCC-CCCH-HHHHHHHHHhh---------c
Q 048364 105 ERMP--L---RNVASWSAMIAAYLNAGAY--------DPGLKLFREMISNEGL-TPDQ-MTIGAVLSGCS---------H 160 (400)
Q Consensus 105 ~~~~--~---~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~m~~~~~~-~p~~-~~~~~ll~~~~---------~ 160 (400)
++.. . |++..|..-+....+.++. +.+.++|+..+..-|. .|+. ..|...+.... .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9976 3 7888888877766665554 3345788887756677 6654 46665554332 2
Q ss_pred ccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHH-------------hcCCHHHHHHH--------------------
Q 048364 161 LGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYA-------------KCGFLKYALMV-------------------- 207 (400)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~g~~~~A~~~-------------------- 207 (400)
.++.+. +..+++.++.........+|......-. ...+++.|...
T Consensus 207 q~~~~~--~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 207 QQRVQY--IRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp HHHHHH--HHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred HhHHHH--HHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 234455 6666666664322211222211110000 00112222222
Q ss_pred -----------------------------------------------HHhccC---CCcccHHHHHHHHHhCCChhhHH-
Q 048364 208 -----------------------------------------------FELMEE---RNVISWTALICGSAHRGYSEDAL- 236 (400)
Q Consensus 208 -----------------------------------------------~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~- 236 (400)
|++... .....|...+..+...|+.++|.
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 222221 12223444444455667777775
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhc--------CCCCC------------hhhHHHHHHH
Q 048364 237 SLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY--------DLEPR------------IQHYGCMVDL 296 (400)
Q Consensus 237 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~------------~~~~~~l~~~ 296 (400)
.+|++.... ++.+...+...+....+.|+++.|.++|+.+.... .-.|+ ..+|...+..
T Consensus 365 ~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 888777654 33344555666666777788888888888777421 00121 2356667777
Q ss_pred HHhcCChHHHHHHHHhc-cC-C-ccHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchH
Q 048364 297 FGKAGFLEEAYEVIRTM-RL-E-PNVIIWGSFLAACKEH-KQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWE 372 (400)
Q Consensus 297 ~~~~g~~~~a~~~~~~~-~~-~-p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 372 (400)
..+.|+.+.|..+|.+. .. . +....|...+..-.+. ++.+.|..+|+..++.. | .++..+...+......|+.+
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-p-~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF-A-TDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-T-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-C-CchHHHHHHHHHHHhCCCHH
Confidence 77778888888888877 22 1 1223333322222333 44788888888888876 6 66667777777777788888
Q ss_pred HHHHHHHHHhcccc
Q 048364 373 GAERVRKLMLNQNV 386 (400)
Q Consensus 373 ~a~~~~~~m~~~~~ 386 (400)
.|+.+|++......
T Consensus 522 ~AR~lferal~~~~ 535 (679)
T 4e6h_A 522 QVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHhcC
Confidence 88888888776543
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.21 E-value=6.4e-10 Score=81.91 Aligned_cols=126 Identities=18% Similarity=0.236 Sum_probs=68.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHh
Q 048364 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKE 331 (400)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~ 331 (400)
+..+...+...|++++|..+++.+.+. .+.+...+..+...+...|++++|...++++ ...| +...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 334444555555555555555555432 1223444555555555555555555555555 2222 34455555566666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 332 HKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 332 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
.|++++|...++++.+.. | .+..++..++.++...|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-P-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666666666666666655 5 4555666666666666666666666665543
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.16 E-value=1.5e-09 Score=90.36 Aligned_cols=169 Identities=12% Similarity=0.064 Sum_probs=135.0
Q ss_pred CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC-hhh
Q 048364 214 RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPN---EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR-IQH 289 (400)
Q Consensus 214 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 289 (400)
.+...+..+...+.+.|++++|+..|+++.+.... + ...+..+..++.+.|++++|...|+.+.+...-.|. ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 35566777788899999999999999999886321 2 567888899999999999999999999965322222 456
Q ss_pred HHHHHHHHHh--------cCChHHHHHHHHhc-cCCccH-HHH-----------------HHHHHHHHhcCCHHHHHHHH
Q 048364 290 YGCMVDLFGK--------AGFLEEAYEVIRTM-RLEPNV-IIW-----------------GSFLAACKEHKQFDMAERVI 342 (400)
Q Consensus 290 ~~~l~~~~~~--------~g~~~~a~~~~~~~-~~~p~~-~~~-----------------~~l~~~~~~~~~~~~a~~~~ 342 (400)
+..+..++.. .|++++|...|++. ...|+. ... ..+...|...|++++|+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 7778888988 99999999999998 434432 222 45678899999999999999
Q ss_pred HHHHHcCCCCC--CchHHHHHHHHhhcc----------cchHHHHHHHHHHhcc
Q 048364 343 KQALRMVKPEN--DGGVFTLICDLYTMN----------EKWEGAERVRKLMLNQ 384 (400)
Q Consensus 343 ~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~ 384 (400)
+++++.. |.. ....+..++.+|... |++++|...++++.+.
T Consensus 172 ~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 172 EAVFDAY-PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHC-TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHC-CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 9999988 622 346888888899866 8999999999998763
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.16 E-value=2.2e-09 Score=79.00 Aligned_cols=130 Identities=18% Similarity=0.252 Sum_probs=102.9
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHH
Q 048364 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297 (400)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (400)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 45667777888888888888888887653 235677777888888889999999999888753 234566788888889
Q ss_pred HhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 298 GKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 298 ~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
...|++++|.+.++++ ...| +...+..+...+...|++++|...++++.+.. |
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~ 134 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-P 134 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS-T
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC-C
Confidence 9999999999999887 3333 56778888889999999999999999998877 5
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.15 E-value=2.4e-10 Score=108.45 Aligned_cols=180 Identities=11% Similarity=-0.093 Sum_probs=142.8
Q ss_pred HhcCCHHHHHHHHHhcc--------C---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048364 196 AKCGFLKYALMVFELME--------E---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264 (400)
Q Consensus 196 ~~~g~~~~A~~~~~~~~--------~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 264 (400)
...|++++|.+.+++.. + .+...+..+...+...|++++|+..|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67899999999998876 3 355678888889999999999999999988763 22567888888889999
Q ss_pred CChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHH
Q 048364 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVI 342 (400)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 342 (400)
|++++|...|+++.+. .+.+...+..+..+|.+.|++++ .+.|++. ...| +...|..+..++.+.|++++|...|
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998853 23356788889999999999999 9999887 5555 5668888999999999999999999
Q ss_pred HHHHHcCCCCCCchHHHHHHHHhhcccc--------hHHHHHHHHHH
Q 048364 343 KQALRMVKPENDGGVFTLICDLYTMNEK--------WEGAERVRKLM 381 (400)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~a~~~~~~m 381 (400)
+++.+.+ | .+..++..+..++...|+ +++|.+.+..+
T Consensus 558 ~~al~l~-P-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 558 DEVPPTS-R-HFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HTSCTTS-T-THHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HhhcccC-c-ccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 9999888 7 778888888888876544 55555555443
No 96
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.15 E-value=2.7e-09 Score=86.64 Aligned_cols=182 Identities=12% Similarity=0.012 Sum_probs=117.3
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CCc----ccHHHHHHHHHhCCChhhHHHHHHHHHHCCCC-CCH-HHHH
Q 048364 184 NEQIATILVDMYAKCGFLKYALMVFELMEE--RNV----ISWTALICGSAHRGYSEDALSLFEMMQATGVK-PNE-MTFT 255 (400)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~~~ 255 (400)
+...+..+...+.+.|++++|...|+++.+ |+. ..+..+..+|.+.|++++|+..|+++.+.... +.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344556677778888999999988888775 332 35677788888889999999888888775322 111 2344
Q ss_pred HHHHHHHh------------------cCChhhHHHHHHHhhhhcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHhccCC
Q 048364 256 GVLTACVH------------------TGLVDEGRKYFKMIDEEYDLEPRI-QHYGCMVDLFGKAGFLEEAYEVIRTMRLE 316 (400)
Q Consensus 256 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 316 (400)
.+..++.. .|++++|...|+.+.+. .|+. ..+...... + .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----~------~~~~~~--- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----V------FLKDRL--- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----H------HHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----H------HHHHHH---
Confidence 44444443 34566666666666532 2222 221111100 0 000000
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc---hHHHHHHHHhhcccchHHHHHHHHHHhccc
Q 048364 317 PNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG---GVFTLICDLYTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 317 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 385 (400)
......+...|.+.|++++|...++++++.. | .++ .++..++.+|.+.|++++|.+.++.+...+
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p-~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-P-DTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-T-TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-c-CCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0111345677889999999999999999988 7 443 578889999999999999999999887644
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.14 E-value=1.1e-10 Score=88.27 Aligned_cols=142 Identities=12% Similarity=0.042 Sum_probs=101.2
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcC
Q 048364 223 ICGSAHRGYSEDALSLFEMMQATGVKP-NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301 (400)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 301 (400)
...+...|++++|+..+++.... .| +...+..+...|.+.|++++|++.|++..+. -+.+...|..+..+|.+.|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 34455567777777777766543 22 2344556777788888888888888887743 2335677888888888888
Q ss_pred ChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHcCCCCCCchHHHHHHHHhhcccc
Q 048364 302 FLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAER-VIKQALRMVKPENDGGVFTLICDLYTMNEK 370 (400)
Q Consensus 302 ~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 370 (400)
++++|...|++. .+.| +...|..+...|.+.|++++|.. +++++++.. | .++.+|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P-~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-P-GSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-T-TCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-c-CCHHHHHHHHHHHHHhCc
Confidence 888888888887 5556 46678888888888888876555 458888888 8 788888887777777664
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.12 E-value=2.5e-09 Score=85.61 Aligned_cols=166 Identities=7% Similarity=-0.029 Sum_probs=117.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHH----------------HHHHHHhCCChhhHHHHHHHHHHCCCCCC
Q 048364 190 ILVDMYAKCGFLKYALMVFELMEE--R-NVISWTA----------------LICGSAHRGYSEDALSLFEMMQATGVKPN 250 (400)
Q Consensus 190 ~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 250 (400)
.....+...|++++|...|++..+ | +...|.. +..+|.+.|++++|+..|++..+.. +-+
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~ 87 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNN 87 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCC
Confidence 344556677888888888877765 2 2334555 7888899999999999999988863 225
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCC--hHHHHHHHHhc-cCCccHHHHHHHHH
Q 048364 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF--LEEAYEVIRTM-RLEPNVIIWGSFLA 327 (400)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~-~~~p~~~~~~~l~~ 327 (400)
...+..+..++...|++++|...|+++.+. -+.+...+..+..+|...|+ ...+...++.. ...|....+.....
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~ 165 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGL 165 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 678888888999999999999999998853 23456778888888766554 44556666665 33344444555566
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHH
Q 048364 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361 (400)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 361 (400)
++...|++++|...|+++++.. | +......+
T Consensus 166 ~~~~~~~~~~A~~~~~~al~l~-P--~~~~~~~l 196 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVILRF-P--STEAQKTL 196 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTTTS-C--CHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-C--CHHHHHHH
Confidence 7777889999999999999888 6 44433333
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.09 E-value=5e-09 Score=88.39 Aligned_cols=172 Identities=8% Similarity=-0.025 Sum_probs=128.3
Q ss_pred HHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCC
Q 048364 205 LMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLE 284 (400)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 284 (400)
...+......+...+..+...+...|++++|...|++..+.. +-+...+..+..++.+.|++++|...++.+... .
T Consensus 106 ~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~ 181 (287)
T 3qou_A 106 RALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---D 181 (287)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---G
T ss_pred HHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---h
Confidence 333444333344556677778888899999999998887763 225677888888888999999999999888743 3
Q ss_pred CChhhHH-HHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC--chHHH
Q 048364 285 PRIQHYG-CMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND--GGVFT 359 (400)
Q Consensus 285 ~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 359 (400)
|+..... .....+...++.++|...+++. ...| +...+..+...+...|++++|...++++++.. | .+ ...+.
T Consensus 182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p-~~~~~~a~~ 259 (287)
T 3qou_A 182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD-L-TAADGQTRX 259 (287)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TGGGGHHHH
T ss_pred cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-c-ccccchHHH
Confidence 4443322 2333466777888888888877 4445 56778888889999999999999999999988 7 44 77888
Q ss_pred HHHHHhhcccchHHHHHHHHHHh
Q 048364 360 LICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 360 ~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
.++.++...|+.++|...+++..
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999888887654
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.08 E-value=9.5e-09 Score=82.47 Aligned_cols=161 Identities=9% Similarity=-0.067 Sum_probs=90.1
Q ss_pred CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChhhHHHHHHHhhhhcCCCCChhhH
Q 048364 215 NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG----LVDEGRKYFKMIDEEYDLEPRIQHY 290 (400)
Q Consensus 215 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (400)
++..+..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|..+|++..+. .+...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 34444445555555555555555555555543 33444444444444 4 566666666665531 244455
Q ss_pred HHHHHHHHh----cCChHHHHHHHHhc-cCCcc---HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchHH
Q 048364 291 GCMVDLFGK----AGFLEEAYEVIRTM-RLEPN---VIIWGSFLAACKE----HKQFDMAERVIKQALRMVKPENDGGVF 358 (400)
Q Consensus 291 ~~l~~~~~~----~g~~~~a~~~~~~~-~~~p~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 358 (400)
..|...|.. .+++++|.+.|++. ...|+ ...+..|...|.. .+++++|..+|++..+.+ .++..+
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~---~~~~a~ 165 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS---RTGYAE 165 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS---CTTHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC---CCHHHH
Confidence 555555555 56666666666666 33332 4555666666665 566777777777766652 234456
Q ss_pred HHHHHHhhcc-c-----chHHHHHHHHHHhcccc
Q 048364 359 TLICDLYTMN-E-----KWEGAERVRKLMLNQNV 386 (400)
Q Consensus 359 ~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 386 (400)
..|..+|... | ++++|...+++..+.|.
T Consensus 166 ~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 166 YWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 6666666543 2 66777777766666554
No 101
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.06 E-value=1.3e-08 Score=82.54 Aligned_cols=181 Identities=13% Similarity=-0.031 Sum_probs=130.2
Q ss_pred CHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccc--hHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CCcc----c
Q 048364 147 DQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWEL--NEQIATILVDMYAKCGFLKYALMVFELMEE--RNVI----S 218 (400)
Q Consensus 147 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~ 218 (400)
+...+..+...+.+.|+++. |...++.+.+..... ....+..+..+|.+.|++++|...|+++.+ |+.. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~--A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQ--AITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHH--HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHH
Confidence 34556667788999999999 999999998864322 246788899999999999999999999875 4322 3
Q ss_pred HHHHHHHHHh------------------CCChhhHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHhhh
Q 048364 219 WTALICGSAH------------------RGYSEDALSLFEMMQATGVKPNEM-TFTGVLTACVHTGLVDEGRKYFKMIDE 279 (400)
Q Consensus 219 ~~~l~~~~~~------------------~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (400)
+..+..++.. .|++++|+..|+++.+. .|+.. ........ ..+...+.
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~~- 147 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRLA- 147 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHHH-
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHHH-
Confidence 4555555553 57899999999999886 34432 22211110 01111111
Q ss_pred hcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 280 EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN----VIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
.....+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|++++|...++.+...+ |
T Consensus 148 --------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~-~ 215 (225)
T 2yhc_A 148 --------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS-S 215 (225)
T ss_dssp --------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC-S
T ss_pred --------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-C
Confidence 11234677889999999999999998 44443 2467888999999999999999999998887 6
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.05 E-value=4.3e-09 Score=98.06 Aligned_cols=160 Identities=11% Similarity=0.030 Sum_probs=122.3
Q ss_pred cCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 048364 198 CGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYF 274 (400)
Q Consensus 198 ~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 274 (400)
.|++++|.+.|++..+ | +...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998876 2 45678889999999999999999999998863 235778889999999999999999999
Q ss_pred HHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcC
Q 048364 275 KMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEH---KQFDMAERVIKQALRMV 349 (400)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 349 (400)
++..+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+..++... |++++|...++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999853 2345778999999999999999999999998 4455 567888899999999 99999999999999999
Q ss_pred CCCCCchHHHHHH
Q 048364 350 KPENDGGVFTLIC 362 (400)
Q Consensus 350 ~~~~~~~~~~~l~ 362 (400)
| .+...+..+.
T Consensus 159 -p-~~~~~~~~l~ 169 (568)
T 2vsy_A 159 -V-GAVEPFAFLS 169 (568)
T ss_dssp -C-CCSCHHHHTT
T ss_pred -C-cccChHHHhC
Confidence 8 6666776655
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.05 E-value=4.3e-09 Score=81.77 Aligned_cols=76 Identities=12% Similarity=0.084 Sum_probs=43.4
Q ss_pred HHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-CchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 306 AYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN-DGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 306 a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
|...+++. ...| +...+..+..++...|++++|...++++++.. |.+ +...+..++.++...|+.++|...+++..
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVN-LGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-cccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 44555544 3334 34555566666666666666666666666665 421 24456666666666666666666665543
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.04 E-value=2.5e-09 Score=83.16 Aligned_cols=158 Identities=11% Similarity=-0.033 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH-H
Q 048364 186 QIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA-C 261 (400)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~ 261 (400)
..+..+...+...|++++|...|++..+ .+...+..+...+...|++++|+..+++..... |+.......... +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 3455677889999999999999999886 356788899999999999999999999886653 344433322212 2
Q ss_pred HhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc---HHHHHHHHHHHHhcCCHHH
Q 048364 262 VHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN---VIIWGSFLAACKEHKQFDM 337 (400)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~ 337 (400)
...+....|...++...+. .+.+...+..+..++...|++++|...|+++ ...|+ ...+..+..++...|+.++
T Consensus 85 ~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 2333445578889888853 2335788899999999999999999999998 66664 4578899999999999999
Q ss_pred HHHHHHHHHH
Q 048364 338 AERVIKQALR 347 (400)
Q Consensus 338 a~~~~~~~~~ 347 (400)
|...+++.+.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998865
No 105
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.03 E-value=4.3e-08 Score=83.02 Aligned_cols=161 Identities=9% Similarity=-0.087 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccCC--Cc-------ccHHHHHHHHHhCCChhhHHHHHHHHHHCCC---CCC--HH
Q 048364 187 IATILVDMYAKCGFLKYALMVFELMEER--NV-------ISWTALICGSAHRGYSEDALSLFEMMQATGV---KPN--EM 252 (400)
Q Consensus 187 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~ 252 (400)
.+...+..+...|++++|.+.+++..+. .. ..+..+...+...|++++|+..+++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3344556666777777777766554431 10 1123344445556666666666666554211 111 23
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhh---hcCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc-------H
Q 048364 253 TFTGVLTACVHTGLVDEGRKYFKMIDE---EYDLEP--RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN-------V 319 (400)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~-------~ 319 (400)
+++.+...|...|++++|...++++.+ ..+..+ ...++..+..+|...|++++|.+.+++. .+.++ .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 555666666666666666666665552 111111 1135555666666666666666666654 11111 3
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 048364 320 IIWGSFLAACKEHKQFDMA-ERVIKQALR 347 (400)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 347 (400)
.+|..+..+|...|++++| ...++++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 4555566666666666666 555555543
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.03 E-value=7.1e-09 Score=96.56 Aligned_cols=146 Identities=9% Similarity=-0.080 Sum_probs=73.9
Q ss_pred cchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHH
Q 048364 162 GSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSL 238 (400)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 238 (400)
|++++ |...++...+.. +.+...+..+...|...|++++|.+.|++..+ .+...+..+...|...|++++|...
T Consensus 3 g~~~~--A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPR--ELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHH--HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44455 555555554432 12345555666666666666666666666554 1334555566666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhc---CChHHHHHHHHhc
Q 048364 239 FEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA---GFLEEAYEVIRTM 313 (400)
Q Consensus 239 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~ 313 (400)
+++..+.. +.+...+..+..++.+.|++++|.+.+++..+. .+.+...+..+..++... |++++|.+.+++.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 66665542 223455566666666666666666666666532 122345555666666666 6666666666655
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.01 E-value=5.3e-09 Score=83.71 Aligned_cols=158 Identities=11% Similarity=0.026 Sum_probs=121.7
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHCCCCCC-HHHHHH----------------HHHHHHhcCChhhHHHHHHHhhhhcCC
Q 048364 221 ALICGSAHRGYSEDALSLFEMMQATGVKPN-EMTFTG----------------VLTACVHTGLVDEGRKYFKMIDEEYDL 283 (400)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~~ 283 (400)
.....+...|++++|+..|++..+. .|+ ...+.. +..++.+.|++++|...|++..+. .
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~ 84 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--A 84 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--C
Confidence 3456678899999999999999886 343 445666 888899999999999999999853 2
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCCchHHH
Q 048364 284 EPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQ--FDMAERVIKQALRMVKPENDGGVFT 359 (400)
Q Consensus 284 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ 359 (400)
+.+...+..+..+|...|++++|...|++. .+.| +...+..+..+|...|+ .+.+...++.... |.+....+.
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~a~~ 161 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS---PTKMQYARY 161 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C---CCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC---CCchhHHHH
Confidence 346788999999999999999999999998 5566 56788888888876654 4455566666542 323444566
Q ss_pred HHHHHhhcccchHHHHHHHHHHhccc
Q 048364 360 LICDLYTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 360 ~l~~~~~~~g~~~~a~~~~~~m~~~~ 385 (400)
....++...|++++|...|++..+..
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 67778888999999999999998743
No 108
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.00 E-value=1.3e-07 Score=80.08 Aligned_cols=93 Identities=12% Similarity=0.131 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc-----cC---Ccc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCCch
Q 048364 290 YGCMVDLFGKAGFLEEAYEVIRTM-----RL---EPN-VIIWGSFLAACKEHKQFDMAERVIKQALRMVK----PENDGG 356 (400)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~-----~~---~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~ 356 (400)
++.+..+|...|++++|...|+++ .. .|. ..++..+...|.+.|++++|...++++++... ...-..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 444444455555555544444443 00 111 12444555555555555555555555443210 101244
Q ss_pred HHHHHHHHhhcccc-hHHHHHHHHHHh
Q 048364 357 VFTLICDLYTMNEK-WEGAERVRKLML 382 (400)
Q Consensus 357 ~~~~l~~~~~~~g~-~~~a~~~~~~m~ 382 (400)
++..++.+|...|+ +++|.+.+++..
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 55555555555552 355555555443
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.99 E-value=5.8e-08 Score=77.84 Aligned_cols=171 Identities=10% Similarity=-0.076 Sum_probs=136.9
Q ss_pred hhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCC-CcccHHHHHHHHHhCC----ChhhHHHHHHHHH
Q 048364 169 GKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEER-NVISWTALICGSAHRG----YSEDALSLFEMMQ 243 (400)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~----~~~~a~~~~~~m~ 243 (400)
|...+....+.| ++..+..|...|...+++++|...|++..+. ++..+..+...|.. + ++++|+..|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 555666666554 6677788888899999999999999988764 56778888888877 6 8999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHhhhhcCCCCC---hhhHHHHHHHHHh----cCChHHHHHHHHh
Q 048364 244 ATGVKPNEMTFTGVLTACVH----TGLVDEGRKYFKMIDEEYDLEPR---IQHYGCMVDLFGK----AGFLEEAYEVIRT 312 (400)
Q Consensus 244 ~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~a~~~~~~ 312 (400)
+.| +...+..+...|.. .+++++|..+|++..+. .|+ +..+..|...|.. .+++++|...|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 765 56677778888877 78999999999999842 332 6788889999988 8899999999999
Q ss_pred c-cCCccHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 048364 313 M-RLEPNVIIWGSFLAACKEH-K-----QFDMAERVIKQALRMV 349 (400)
Q Consensus 313 ~-~~~p~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 349 (400)
. ...++...+..|...|... | ++++|..++++..+.+
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 8 4334556777777777653 3 8999999999999998
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.99 E-value=7.4e-09 Score=88.36 Aligned_cols=220 Identities=9% Similarity=0.021 Sum_probs=152.7
Q ss_pred hcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhc-ccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHH
Q 048364 124 NAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSH-LGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLK 202 (400)
Q Consensus 124 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 202 (400)
..|++++|.+++++..+.. +. .+.+ .++++. +. ..|......|...|+++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~---~~---------~~~~~~~~~~~--A~---------------~~~~~a~~~~~~~g~~~ 53 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL---KT---------SFMKWKPDYDS--AA---------------SEYAKAAVAFKNAKQLE 53 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH---CC---------CSSSCSCCHHH--HH---------------HHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHHHc---cc---------cccCCCCCHHH--HH---------------HHHHHHHHHHHHcCCHH
Confidence 3567788888888776221 11 1222 344444 33 34555667888999999
Q ss_pred HHHHHHHhccC-----CC----cccHHHHHHHHHhCCChhhHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHhcCChh
Q 048364 203 YALMVFELMEE-----RN----VISWTALICGSAHRGYSEDALSLFEMMQATG---VKPN--EMTFTGVLTACVHTGLVD 268 (400)
Q Consensus 203 ~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~--~~~~~~l~~~~~~~~~~~ 268 (400)
+|...|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+..+|.. |+++
T Consensus 54 ~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~ 132 (307)
T 2ifu_A 54 QAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLS 132 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHH
Confidence 99999987764 11 3478888899999999999999999876531 1222 3567788888888 9999
Q ss_pred hHHHHHHHhhhhcCCCC----ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc------c-HHHHHHHHHHHHhcCCHH
Q 048364 269 EGRKYFKMIDEEYDLEP----RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP------N-VIIWGSFLAACKEHKQFD 336 (400)
Q Consensus 269 ~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p------~-~~~~~~l~~~~~~~~~~~ 336 (400)
+|...|++..+-..-.. ...++..+...|.+.|++++|...|++. .+.| . ...+..+..++...|+++
T Consensus 133 ~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 212 (307)
T 2ifu_A 133 KAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYV 212 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHH
Confidence 99999998874321111 1457888999999999999999999988 2211 1 235667777888889999
Q ss_pred HHHHHHHHHHHcCCCCCCch----HHHHHHHHhhcccchHHHHH
Q 048364 337 MAERVIKQALRMVKPENDGG----VFTLICDLYTMNEKWEGAER 376 (400)
Q Consensus 337 ~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~ 376 (400)
+|...+++.. .. |..... ....++.++ ..|+.+.+.+
T Consensus 213 ~A~~~~~~al-~~-p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 213 AAQKCVRESY-SI-PGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHT-TS-TTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHh-CC-CCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999999999 66 622211 234445545 5677666655
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.98 E-value=9e-09 Score=86.84 Aligned_cols=163 Identities=12% Similarity=-0.053 Sum_probs=130.5
Q ss_pred ccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHH-H
Q 048364 181 WELNEQIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT-G 256 (400)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~ 256 (400)
.+.+...+..+...+...|++++|...|++..+ | +...+..+...+...|++++|...++++... .|+..... .
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 345666777888889999999999999998875 3 4567888899999999999999999988665 44544332 2
Q ss_pred HHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc---HHHHHHHHHHHHhc
Q 048364 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN---VIIWGSFLAACKEH 332 (400)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~---~~~~~~l~~~~~~~ 332 (400)
....+...++.+.|...+++.... -+.+...+..+...|...|++++|...|+++ ...|+ ...+..++..+...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 233466778888899999988853 2456788899999999999999999999998 44553 56889999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 048364 333 KQFDMAERVIKQALR 347 (400)
Q Consensus 333 ~~~~~a~~~~~~~~~ 347 (400)
|+.++|...+++.+.
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999988764
No 112
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.97 E-value=3.3e-08 Score=83.69 Aligned_cols=166 Identities=8% Similarity=-0.031 Sum_probs=124.6
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC----hh
Q 048364 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNE-----MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR----IQ 288 (400)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 288 (400)
.+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...+++..+......+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445677888999999999999988775322111 22344556677889999999999988742111111 34
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhc----cCCcc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCCc
Q 048364 289 HYGCMVDLFGKAGFLEEAYEVIRTM----RLEPN-----VIIWGSFLAACKEHKQFDMAERVIKQALRMVK----PENDG 355 (400)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~----~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~ 355 (400)
+++.+...|...|++++|...|++. ...|+ ..++..+...|...|++++|...+++.++... +....
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7889999999999999999999887 11222 25888999999999999999999999887541 10126
Q ss_pred hHHHHHHHHhhcccchHHH-HHHHHHHhc
Q 048364 356 GVFTLICDLYTMNEKWEGA-ERVRKLMLN 383 (400)
Q Consensus 356 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 383 (400)
.+|..++.+|...|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 7889999999999999999 777776653
No 113
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.96 E-value=3.1e-09 Score=80.16 Aligned_cols=140 Identities=6% Similarity=-0.112 Sum_probs=93.2
Q ss_pred HHHHHhcCCHHHHHHHHHhccCC---CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 048364 192 VDMYAKCGFLKYALMVFELMEER---NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVD 268 (400)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 268 (400)
..++...|++++|...++..... +...+..+...|.+.|++++|+..|++..+.. +-+..+|..+..++...|+++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 34455567777787777776653 34556677778888888888888888877753 225677777888888888888
Q ss_pred hHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHH-HHhc-cCCc-cHHHHHHHHHHHHhcCC
Q 048364 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEV-IRTM-RLEP-NVIIWGSFLAACKEHKQ 334 (400)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~-~~~p-~~~~~~~l~~~~~~~~~ 334 (400)
+|...|+...+. -+.+...+..+...|.+.|++++|.+. +++. .+.| +..+|......+...|+
T Consensus 83 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888887742 123566777788888888887765554 4554 5555 44556655555555553
No 114
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.96 E-value=3.4e-08 Score=93.78 Aligned_cols=169 Identities=9% Similarity=-0.048 Sum_probs=127.7
Q ss_pred hcccchhhhhhhhhhhHHH--------hccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHH
Q 048364 159 SHLGSVGLLMGKSAHGFIV--------KNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSA 227 (400)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 227 (400)
...|++++ |...++.+. +. .+.+...+..+..+|...|++++|.+.|++..+ .+...|..+..++.
T Consensus 402 ~~~~~~~~--A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQ--TLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHH--HHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred ccccCHHH--HHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHH
Confidence 66777777 777777776 22 233566778888888899999999999988875 35567888888889
Q ss_pred hCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHH
Q 048364 228 HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAY 307 (400)
Q Consensus 228 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 307 (400)
..|++++|+..|++..+... -+...+..+..++.+.|++++ .+.|+++.+. -+.+...|..+..+|.+.|++++|.
T Consensus 479 ~~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999998887632 255777888888889999999 9999888853 2335677888889999999999999
Q ss_pred HHHHhc-cCCcc-HHHHHHHHHHHHhcCC
Q 048364 308 EVIRTM-RLEPN-VIIWGSFLAACKEHKQ 334 (400)
Q Consensus 308 ~~~~~~-~~~p~-~~~~~~l~~~~~~~~~ 334 (400)
+.|++. ...|+ ...+..+..++...++
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999988 66675 4567777777766544
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.95 E-value=5.7e-08 Score=77.84 Aligned_cols=91 Identities=14% Similarity=-0.097 Sum_probs=68.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 048364 188 ATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267 (400)
Q Consensus 188 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 267 (400)
+..+...+...|++++|...|++...++...|..+...|...|++++|+..|++..... +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44566677788888888888888877777777778888888888888888888777653 23556777777777888888
Q ss_pred hhHHHHHHHhhh
Q 048364 268 DEGRKYFKMIDE 279 (400)
Q Consensus 268 ~~a~~~~~~~~~ 279 (400)
++|...++...+
T Consensus 88 ~~A~~~~~~al~ 99 (213)
T 1hh8_A 88 DLAIKDLKEALI 99 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877774
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.94 E-value=4e-08 Score=78.77 Aligned_cols=120 Identities=14% Similarity=0.130 Sum_probs=62.1
Q ss_pred HHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCC
Q 048364 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQ 334 (400)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 334 (400)
+...+...|++++|...|++.. .|+...+..+..+|...|++++|.+.|++. ...| +...+..+..++...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 3344445555555555555443 234445555555555555555555555554 2222 33445555555555555
Q ss_pred HHHHHHHHHHHHHcCCCCCCc----------------hHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 335 FDMAERVIKQALRMVKPENDG----------------GVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 335 ~~~a~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
+++|...++++.+.. | .+. .++..++.+|...|++++|.+.+++..+
T Consensus 87 ~~~A~~~~~~al~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 87 YDLAIKDLKEALIQL-R-GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHHHTT-T-TCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC-C-CccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555555555544 3 222 4555555555555555555555555544
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.93 E-value=1.5e-07 Score=79.67 Aligned_cols=203 Identities=9% Similarity=-0.075 Sum_probs=143.0
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchH---HHHHHHHHHHHhcCCHHHHHHHH
Q 048364 132 LKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE---QIATILVDMYAKCGFLKYALMVF 208 (400)
Q Consensus 132 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~ 208 (400)
...+..+. .....|+..+...+...+.- .+-..+... ...+. ..+...+..+...|++++|..++
T Consensus 31 ~~~~s~~e-~g~~~~~~~~l~~i~~~l~~----------~~~~~~~~~-~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~ 98 (293)
T 3u3w_A 31 QSEVSRIE-SGAVYPSMDILQGIAAKLQI----------PIIHFYEVL-IYSDIERKKQFKDQVIMLCKQKRYKEIYNKV 98 (293)
T ss_dssp HHHHHHHH-TTSCCCCHHHHHHHHHHHTC----------CTHHHHHTT-TSSCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHH-CCCCCCCHHHHHHHHHHhCc----------CHHHHhCCC-CCCcchhHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34566665 54567887777777666531 111111111 12222 23334477888999999999999
Q ss_pred HhccCCCc---------ccHHHHHHHHHhCCChhhHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChhhHHHHH
Q 048364 209 ELMEERNV---------ISWTALICGSAHRGYSEDALSLFEMMQATGVK-PN----EMTFTGVLTACVHTGLVDEGRKYF 274 (400)
Q Consensus 209 ~~~~~~~~---------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~ 274 (400)
++..+... ..+..+...+...|++++|+..+++....... ++ ..+++.+..+|...|++++|..++
T Consensus 99 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~ 178 (293)
T 3u3w_A 99 WNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLF 178 (293)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 98875211 12334667777888999999999999884322 22 236889999999999999999999
Q ss_pred HHhhhhc----CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-------cCCcc-HHHHHHHHHHHHhcCC-HHHHHH
Q 048364 275 KMIDEEY----DLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-------RLEPN-VIIWGSFLAACKEHKQ-FDMAER 340 (400)
Q Consensus 275 ~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~-~~~a~~ 340 (400)
+++.+.. +..+ ...++..+...|.+.|++++|.+.+++. +..+. ..+|..+..+|...|+ +++|..
T Consensus 179 ~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~ 258 (293)
T 3u3w_A 179 EQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIED 258 (293)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 9888421 1112 2347888999999999999999999987 22222 5688899999999995 699999
Q ss_pred HHHHHH
Q 048364 341 VIKQAL 346 (400)
Q Consensus 341 ~~~~~~ 346 (400)
.++++.
T Consensus 259 ~~~~Al 264 (293)
T 3u3w_A 259 AYKKAS 264 (293)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
No 118
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.91 E-value=5.2e-08 Score=74.50 Aligned_cols=128 Identities=11% Similarity=0.015 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHH
Q 048364 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAAC 329 (400)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~ 329 (400)
..+..+...+...|++++|...++...+. .+.+...+..+..++...|++++|.+.+++. ...| +...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 44666677778888888888888888753 2345677888888888999999999988887 4344 566788888899
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHH--hhcccchHHHHHHHHHHhc
Q 048364 330 KEHKQFDMAERVIKQALRMVKPENDGGVFTLICDL--YTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 330 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~~ 383 (400)
...|++++|...++++.+.. | .+...+..+..+ +...|++++|.+.+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-P-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-T-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999988 7 666666444444 7788999999998887654
No 119
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.90 E-value=1.2e-08 Score=76.66 Aligned_cols=95 Identities=18% Similarity=0.049 Sum_probs=58.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 048364 287 IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDL 364 (400)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 364 (400)
...+..+...+.+.|++++|...|++. ...| +...|..+..+|...|++++|+..|+++++.. | .++.++..++.+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P-~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-K-NDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-C-CCcHHHHHHHHH
Confidence 344555556666666666666666665 3344 44556666666666666666666666666666 6 566666666666
Q ss_pred hhcccchHHHHHHHHHHhc
Q 048364 365 YTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 365 ~~~~g~~~~a~~~~~~m~~ 383 (400)
|...|++++|...|++..+
T Consensus 114 ~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666654
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.90 E-value=3.7e-08 Score=71.63 Aligned_cols=109 Identities=12% Similarity=0.043 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHH
Q 048364 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAAC 329 (400)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~ 329 (400)
..+......+.+.|++++|++.|++..+. .+.+...|..+..+|.+.|++++|++.|++. .+.| +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 44555666677777777777777777642 2335666777777777777777777777776 4444 455677777777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 048364 330 KEHKQFDMAERVIKQALRMVKPENDGGVFTLICDL 364 (400)
Q Consensus 330 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 364 (400)
...|++++|...|+++++.. | .+..+...+..+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~-P-~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD-P-SNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-c-CCHHHHHHHHHh
Confidence 77777777777777777777 6 666666555443
No 121
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.90 E-value=4.8e-08 Score=83.30 Aligned_cols=187 Identities=11% Similarity=-0.049 Sum_probs=125.1
Q ss_pred HHHHHHHHhhcccchhhhhhhhhhhHHHhcccc-----chHHHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----
Q 048364 150 TIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWE-----LNEQIATILVDMYAKCGFLKYALMVFELMEE-----RN---- 215 (400)
Q Consensus 150 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~---- 215 (400)
.|......+...|+++. |...+....+.... ....+++.+..+|...|++++|...|++..+ .+
T Consensus 38 ~~~~a~~~~~~~g~~~~--A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~ 115 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQ--AKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTA 115 (307)
T ss_dssp HHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 57777778888888888 88887776654321 1245777888888888888888888877653 11
Q ss_pred cccHHHHHHHHHhCCChhhHHHHHHHHHHCCCC---C--CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhc---CCCCC-
Q 048364 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVK---P--NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY---DLEPR- 286 (400)
Q Consensus 216 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~---p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~- 286 (400)
..+++.+...|.. |++++|+..|++..+.... + ...++..+...+.+.|++++|...|++..+.. +..+.
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 194 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTC 194 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHH
Confidence 2456777778877 8999999888887653111 1 13567778888888899999998888877431 11111
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhccCCcc------HHHHHHHHHHHHhcCCHHHHHH
Q 048364 287 IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPN------VIIWGSFLAACKEHKQFDMAER 340 (400)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~------~~~~~~l~~~~~~~~~~~~a~~ 340 (400)
...+..++.++...|++++|...|++.-..|+ ......++.++ ..|+.+.+..
T Consensus 195 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 195 YKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 23566667777788899999888887622332 12344455544 5566665555
No 122
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.84 E-value=8.2e-08 Score=69.29 Aligned_cols=114 Identities=19% Similarity=0.225 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHH
Q 048364 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAA 328 (400)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~ 328 (400)
...+..+...+...|++++|.+.++++.+. .+.+...+..+...+...|++++|...++++ ...| +..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 456667777778888888888888887743 2345667777888888888888888888877 3333 56677788888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcc
Q 048364 329 CKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368 (400)
Q Consensus 329 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 368 (400)
+...|++++|...++++.+.. | .+...+..+..++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-P-NNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-C-CcHHHHHHHHHHHHhc
Confidence 888888888888888888887 7 6677777776666543
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.84 E-value=3.7e-08 Score=71.67 Aligned_cols=100 Identities=16% Similarity=0.154 Sum_probs=89.2
Q ss_pred CCCC-hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHH
Q 048364 283 LEPR-IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359 (400)
Q Consensus 283 ~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 359 (400)
+.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..+|.+.|++++|+..++++++.+ | .+..+|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p-~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-S-KFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-h-hhhHHHH
Confidence 3443 356778899999999999999999998 5555 67789999999999999999999999999999 8 8899999
Q ss_pred HHHHHhhcccchHHHHHHHHHHhcc
Q 048364 360 LICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 360 ~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
.++.+|...|++++|.+.|++..+.
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998763
No 124
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.83 E-value=2.1e-06 Score=72.24 Aligned_cols=158 Identities=11% Similarity=0.070 Sum_probs=99.3
Q ss_pred CCHHHHHHHHHhccCC---CcccHHHHHHHHHhCCChh--hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------h
Q 048364 199 GFLKYALMVFELMEER---NVISWTALICGSAHRGYSE--DALSLFEMMQATGVKPNEMTFTGVLTACVHTGL------V 267 (400)
Q Consensus 199 g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~------~ 267 (400)
++++++..+++++.+. +..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.-...+...+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 5677777777777653 4445555555566667766 777777777776433 55666655555555555 6
Q ss_pred hhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHH-HHHHHHhc-cC----CccHHHHHHHHHHHHhcCCHHHHHHH
Q 048364 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE-AYEVIRTM-RL----EPNVIIWGSFLAACKEHKQFDMAERV 341 (400)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~-~~----~p~~~~~~~l~~~~~~~~~~~~a~~~ 341 (400)
+++.+.++.+... -+-|...|+.+...+.+.|+... +..+..++ .. ..+...+..+..+|.+.|+.++|.++
T Consensus 203 ~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 7777777777642 23466677777777777666443 44555555 22 23556677777777777777788888
Q ss_pred HHHHHH-cCCCCCCchHHHHH
Q 048364 342 IKQALR-MVKPENDGGVFTLI 361 (400)
Q Consensus 342 ~~~~~~-~~~~~~~~~~~~~l 361 (400)
++.+.+ .+ | .....|...
T Consensus 281 ~~~l~~~~D-p-ir~~yW~~~ 299 (306)
T 3dra_A 281 YDLLKSKYN-P-IRSNFWDYQ 299 (306)
T ss_dssp HHHHHHTTC-G-GGHHHHHHH
T ss_pred HHHHHhccC-h-HHHHHHHHH
Confidence 877776 45 5 555555443
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.82 E-value=9.7e-08 Score=69.88 Aligned_cols=116 Identities=14% Similarity=0.049 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHH
Q 048364 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLA 327 (400)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~ 327 (400)
+...+..+...+...|++++|...++...+ ..+.+...+..+..+|...|++++|.+.+++. ...| +...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345666677777777777777777777763 22335666777777777788888888877776 3334 4567777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhccc
Q 048364 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNE 369 (400)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 369 (400)
++...|++++|...++++.+.. | .+...+..+..++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-S-SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-G-GGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-C-CchHHHHHHHHHHHHhc
Confidence 8888888888888888888777 6 56667777777666554
No 126
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.82 E-value=9.1e-08 Score=69.70 Aligned_cols=118 Identities=10% Similarity=0.009 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHH
Q 048364 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLA 327 (400)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~ 327 (400)
+...+..+...+...|++++|...++.+.+. .+.+...+..+..++...|++++|.+.+++. ...| +...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 3455666777777888888888888887743 2335667777888888888888888888877 3344 4667788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccch
Q 048364 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKW 371 (400)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 371 (400)
.+...|++++|...++++.+.. | .+...+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-P-DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-T-TCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-c-cchHHHHHHHHHHHHHhcC
Confidence 8888899999999999988888 7 6778888888888777765
No 127
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.81 E-value=4.9e-08 Score=84.28 Aligned_cols=127 Identities=13% Similarity=0.027 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC----------------hhhHHHHHHHHHhcCChHHHHHHHHhc-
Q 048364 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR----------------IQHYGCMVDLFGKAGFLEEAYEVIRTM- 313 (400)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~- 313 (400)
...+..+...+.+.|++++|...|++..+. .|+ ...|..+..+|.+.|++++|...+++.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345666667777777777777777777643 222 478888999999999999999999988
Q ss_pred cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHH-HHHHHHHh
Q 048364 314 RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGA-ERVRKLML 382 (400)
Q Consensus 314 ~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 382 (400)
.+.| +...|..+..+|...|++++|...|+++++.. | .+..++..+..++...|++++| ...++.|.
T Consensus 224 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 224 ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-P-NNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-S-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455 67788899999999999999999999999998 8 7889999999999999999988 44566554
No 128
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.79 E-value=1.9e-08 Score=75.48 Aligned_cols=96 Identities=7% Similarity=-0.063 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHH
Q 048364 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAAC 329 (400)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~ 329 (400)
..+..+...+...|++++|...|+.+... -+.+...|..+..+|...|++++|...|++. .+.| +...+..+..+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34445555566666666666666666532 1234555556666666666666666666665 3333 344555566666
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 048364 330 KEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 330 ~~~~~~~~a~~~~~~~~~~~ 349 (400)
...|++++|...|+++++..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 66666666666666666655
No 129
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.78 E-value=3.1e-08 Score=83.25 Aligned_cols=192 Identities=7% Similarity=-0.100 Sum_probs=127.4
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048364 184 NEQIATILVDMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTA 260 (400)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 260 (400)
+...+..+...+...|++++|...|++..+ | +...|..+..+|.+.|++++|+..+++..+.. +-+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345667778888899999999999988765 3 56678888889999999999999999887763 2356778888888
Q ss_pred HHhcCChhhHHHHHHHhhhhcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHH
Q 048364 261 CVHTGLVDEGRKYFKMIDEEYDLEPR-IQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAE 339 (400)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 339 (400)
+...|++++|...|+...+.. |+ ...+...+....+..+...... .......++......+ ..+ ..|++++|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence 999999999999998877431 21 1111112222221111111111 1112222333333333 222 368899999
Q ss_pred HHHHHHHHcCCCCCCchHHHHHHHHhhcc-cchHHHHHHHHHHhcc
Q 048364 340 RVIKQALRMVKPENDGGVFTLICDLYTMN-EKWEGAERVRKLMLNQ 384 (400)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 384 (400)
+.++++.+.. | .+......+...+.+. +.+++|.++|.+..+.
T Consensus 156 ~~~~~al~~~-p-~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGH-E-DDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTT-S-CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccc-c-chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999988887 7 6666666666666655 7788999999888763
No 130
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.78 E-value=9.3e-08 Score=75.84 Aligned_cols=153 Identities=13% Similarity=-0.002 Sum_probs=85.2
Q ss_pred hcCCHHHHHH---HHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChh
Q 048364 197 KCGFLKYALM---VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQAT----GVKP-NEMTFTGVLTACVHTGLVD 268 (400)
Q Consensus 197 ~~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~ 268 (400)
..|++++|.+ .+..-.......+..+...+...|++++|...+++.... +..| ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 333222123445666666667777777777777665541 1111 2345566666677777777
Q ss_pred hHHHHHHHhhhh---cCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHhc-----c-CCcc--HHHHHHHHHHHHhcCCH
Q 048364 269 EGRKYFKMIDEE---YDLEP--RIQHYGCMVDLFGKAGFLEEAYEVIRTM-----R-LEPN--VIIWGSFLAACKEHKQF 335 (400)
Q Consensus 269 ~a~~~~~~~~~~---~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~-----~-~~p~--~~~~~~l~~~~~~~~~~ 335 (400)
+|...+++..+. .+..+ ....+..+...+...|++++|...+++. . -.|. ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 777777665532 11111 1234566666677777777777766665 1 0111 22345666667777777
Q ss_pred HHHHHHHHHHHHcC
Q 048364 336 DMAERVIKQALRMV 349 (400)
Q Consensus 336 ~~a~~~~~~~~~~~ 349 (400)
++|...+++..+..
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777666543
No 131
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.76 E-value=4.3e-06 Score=75.93 Aligned_cols=194 Identities=10% Similarity=-0.020 Sum_probs=114.2
Q ss_pred hHHHHHHHHHHHHhCcccchhhhhHHHHHHHhCCHHHHHHHHhhCCC--CChhhHHHHHHHHHcCCC-hHHHHHHHhhCC
Q 048364 32 LTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPE--RNAVTWNTMIKGYSKSGN-VCEARDFFERMP 108 (400)
Q Consensus 32 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~ 108 (400)
++.|..+|+.++. .+-.|+++.+..+|+.... |+...|...+....+.++ .+....+|+...
T Consensus 11 i~~aR~vyer~l~---------------~~P~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al 75 (493)
T 2uy1_A 11 LSSPSAIMEHARR---------------LYMSKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTL 75 (493)
T ss_dssp -CCHHHHHHHHHH---------------HHHTTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHH
T ss_pred hHHHHHHHHHHHH---------------HCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 6666666666554 3322899999999999885 788899988888777663 345566666533
Q ss_pred ------CCChhhHHHHHHHHH----hcCCcchHHHHHHHHHhcCCCCCCH--HHHHHHHHHhhccc-------------c
Q 048364 109 ------LRNVASWSAMIAAYL----NAGAYDPGLKLFREMISNEGLTPDQ--MTIGAVLSGCSHLG-------------S 163 (400)
Q Consensus 109 ------~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~~-------------~ 163 (400)
..+...|...+..+. ..|+.+.+.++|+..+ . +++.. ..|......-...+ .
T Consensus 76 ~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL-~--~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~ 152 (493)
T 2uy1_A 76 GQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRAL-Q--TPMGSLSELWKDFENFELELNKITGKKIVGDTLPI 152 (493)
T ss_dssp HHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHH-T--SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH-h--ChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHH
Confidence 235677777776543 3467889999999998 3 33221 22322222111111 1
Q ss_pred hhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhc--CC-----HHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChh
Q 048364 164 VGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC--GF-----LKYALMVFELMEE--R-NVISWTALICGSAHRGYSE 233 (400)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~-----~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~ 233 (400)
+.. +..++..+...-...+...|...+..-... |- .+.+..+|+++.. | ....|...+..+...|+.+
T Consensus 153 y~~--ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~ 230 (493)
T 2uy1_A 153 FQS--SFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKE 230 (493)
T ss_dssp HHH--HHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHH--HHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 111 222233222211111223454444432221 11 3446678887765 3 4556777788888999999
Q ss_pred hHHHHHHHHHHC
Q 048364 234 DALSLFEMMQAT 245 (400)
Q Consensus 234 ~a~~~~~~m~~~ 245 (400)
.|..+|++....
T Consensus 231 ~ar~i~erAi~~ 242 (493)
T 2uy1_A 231 KAKKVVERGIEM 242 (493)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999999999887
No 132
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.75 E-value=2.8e-07 Score=69.12 Aligned_cols=98 Identities=7% Similarity=-0.035 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHH
Q 048364 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAA 328 (400)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~ 328 (400)
...+..+...+.+.|++++|...|+.+.+. -+.+...|..+..+|...|++++|...|++. .+.| +...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 356777788889999999999999999853 2446788899999999999999999999988 5556 45678889999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCC
Q 048364 329 CKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 329 ~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
|...|++++|...|+++++.. |
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~-~ 135 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS-N 135 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-C
T ss_pred HHHcCCHHHHHHHHHHHHHhC-C
Confidence 999999999999999999988 6
No 133
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.74 E-value=2.1e-07 Score=65.70 Aligned_cols=99 Identities=15% Similarity=0.113 Sum_probs=80.2
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--CchHHHHH
Q 048364 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEN--DGGVFTLI 361 (400)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l 361 (400)
+...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++.+.. | . +..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~-~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-E-DEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-C-CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-c-ccchHHHHHHH
Confidence 4556777888888888888888888887 3333 56677888888888999999999999998887 7 6 78888888
Q ss_pred HHHhhcc-cchHHHHHHHHHHhcccc
Q 048364 362 CDLYTMN-EKWEGAERVRKLMLNQNV 386 (400)
Q Consensus 362 ~~~~~~~-g~~~~a~~~~~~m~~~~~ 386 (400)
+.++... |++++|.+.+++..+..-
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 8899999 999999999888876543
No 134
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.73 E-value=2.5e-06 Score=71.84 Aligned_cols=192 Identities=11% Similarity=0.059 Sum_probs=143.3
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHhccCC---CcccHHHHHHHH----HhC---CChhhHHHHHHHHHHCCCCCCHHHHH
Q 048364 188 ATILVDMYAKCG--FLKYALMVFELMEER---NVISWTALICGS----AHR---GYSEDALSLFEMMQATGVKPNEMTFT 255 (400)
Q Consensus 188 ~~~l~~~~~~~g--~~~~A~~~~~~~~~~---~~~~~~~l~~~~----~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~ 255 (400)
|+.-..++...| +++++++.++.+... +..+|+.-...+ ... +++++++.+++++.+... -+...|+
T Consensus 70 Wn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p-kny~aW~ 148 (306)
T 3dra_A 70 WIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDP-KNHHVWS 148 (306)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC-CCHHHHH
Confidence 343444444555 788888888887752 344555443333 444 789999999999998743 3778888
Q ss_pred HHHHHHHhcCChh--hHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCC------hHHHHHHHHhc-cCCc-cHHHHHHH
Q 048364 256 GVLTACVHTGLVD--EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF------LEEAYEVIRTM-RLEP-NVIIWGSF 325 (400)
Q Consensus 256 ~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~a~~~~~~~-~~~p-~~~~~~~l 325 (400)
.-..++.+.|.++ ++.+.++.+.+. -+-+...|+.....+.+.+. ++++++.++++ ...| |...|+.+
T Consensus 149 ~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~ 226 (306)
T 3dra_A 149 YRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYL 226 (306)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHH
Confidence 7777888888888 999999999963 24467788877777777776 88999999887 4455 67788888
Q ss_pred HHHHHhcCCHH-HHHHHHHHHHHcC--CCCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 326 LAACKEHKQFD-MAERVIKQALRMV--KPENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 326 ~~~~~~~~~~~-~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
...+.+.|+.. .+..+++++.+.+ .| .++.++..++.+|.+.|+.++|.++++.+.+
T Consensus 227 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 227 LGIHERFDRSITQLEEFSLQFVDLEKDQV-TSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHTTCCGGGGHHHHHTTEEGGGTEE-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCChHHHHHHHHHHHhccCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 88888888744 4556777766543 14 6788999999999999999999999999874
No 135
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.73 E-value=2e-06 Score=78.05 Aligned_cols=351 Identities=10% Similarity=0.007 Sum_probs=204.3
Q ss_pred CCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCC-HHHHHHHHhhCCC------CChhh
Q 048364 12 VPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTS-FGFARKLFDELPE------RNAVT 83 (400)
Q Consensus 12 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~-~~~a~~~~~~~~~------~~~~~ 83 (400)
+.--...|...+..+-. |+++.+.++|++.+.. .|+...|...+... +.++ .+....+|+.... .+...
T Consensus 11 i~~aR~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~i 87 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGL 87 (493)
T ss_dssp -CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHH
T ss_pred hHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHH
Confidence 34445667777777765 8899999999998873 47888999999988 6653 4556666666442 35677
Q ss_pred HHHHHHHHH----cCCChHHHHHHHhhCCC-C--Ch-hhHHHHHHHHH-------------hcCCcchHHHHHHHHHhcC
Q 048364 84 WNTMIKGYS----KSGNVCEARDFFERMPL-R--NV-ASWSAMIAAYL-------------NAGAYDPGLKLFREMISNE 142 (400)
Q Consensus 84 ~~~l~~~~~----~~~~~~~a~~~~~~~~~-~--~~-~~~~~l~~~~~-------------~~g~~~~a~~~~~~m~~~~ 142 (400)
|...+..+. .+++++.+.++|++... | +. ..|......-. ..+.+..|..+++.+....
T Consensus 88 W~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~ 167 (493)
T 2uy1_A 88 YKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLI 167 (493)
T ss_dssp HHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 888887654 34678889999988742 2 11 12221111000 1122334444444443100
Q ss_pred CCCCCHHHHHHHHHHhhccc----c---hhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCC
Q 048364 143 GLTPDQMTIGAVLSGCSHLG----S---VGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEERN 215 (400)
Q Consensus 143 ~~~p~~~~~~~ll~~~~~~~----~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 215 (400)
-..+...|...+.--...+ + .+. +..+++.+.... +.+..+|...+..+.+.|+.+.|..+|++....
T Consensus 168 -~~~s~~~W~~y~~~E~~~~~~~~~~~~~~R--v~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~- 242 (493)
T 2uy1_A 168 -RGWSVKNAARLIDLEMENGMKLGGRPHESR--MHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM- 242 (493)
T ss_dssp -HTCSHHHHHHHHHHHHTCTTCCCHHHHHHH--HHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred -hhccHHHHHHHHHHHhcCCccCcchhhHHH--HHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-
Confidence 0012223433333221110 0 122 455677666643 345777888888888999999999999877653
Q ss_pred cccHHHHHHHHHhCCChhhHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCC
Q 048364 216 VISWTALICGSAHRGYSEDALSLFEMMQATG---------VKP---NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDL 283 (400)
Q Consensus 216 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---------~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 283 (400)
+.....-+ .|....+.++. ++.+.+.- ..+ ....|...+....+.++.+.|..+|+.+ +..
T Consensus 243 P~~~~l~~-~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-- 315 (493)
T 2uy1_A 243 SDGMFLSL-YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-- 315 (493)
T ss_dssp CCSSHHHH-HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS--
T ss_pred CCcHHHHH-HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC--
Confidence 22211111 22222222222 22222210 011 1234555666666678899999999988 321
Q ss_pred CCChhhHHHHHHHHHh-cCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHH
Q 048364 284 EPRIQHYGCMVDLFGK-AGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTL 360 (400)
Q Consensus 284 ~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 360 (400)
..+...|...+..-.. .++.+.|..+|+.. ..-| +...+...+......|+.+.|..+|+++ + .....+..
T Consensus 316 ~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~-----~-k~~~lw~~ 389 (493)
T 2uy1_A 316 GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL-----E-KTSRMWDS 389 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS-----C-CBHHHHHH
T ss_pred CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----H-HHHHHHHH
Confidence 2234444433332222 33699999999887 2123 2344566677777889999999999987 2 35667777
Q ss_pred HHHHhhcccchHHHHHHHHHHhc
Q 048364 361 ICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 361 l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
.+..-...|+.+.+..+++++.+
T Consensus 390 ~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 390 MIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777778999999888888774
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.72 E-value=7.8e-08 Score=74.60 Aligned_cols=126 Identities=7% Similarity=0.037 Sum_probs=97.1
Q ss_pred HHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHH-HHhcCCh-
Q 048364 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL-FGKAGFL- 303 (400)
Q Consensus 226 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~- 303 (400)
+...|++++|+..+++..... +.+...+..+..++...|++++|...|+.+.+.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcc
Confidence 356788999999999887763 3366788888899999999999999999888532 3456677788888 7788998
Q ss_pred -HHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCch
Q 048364 304 -EEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356 (400)
Q Consensus 304 -~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 356 (400)
++|...+++. ...| +...+..+...+...|++++|...++++.+.. | .+..
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p-~~~~ 150 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN-S-PRIN 150 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-C-TTSC
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-C-CCcc
Confidence 9999999988 4445 46678888889999999999999999999988 7 4443
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.71 E-value=5.3e-07 Score=74.25 Aligned_cols=183 Identities=9% Similarity=-0.014 Sum_probs=121.4
Q ss_pred hcCCHHHHHHHHHhccCC---CcccHHHH-------HHHHHhCCChhhHHHHHHHHHHCCCCCCH---------------
Q 048364 197 KCGFLKYALMVFELMEER---NVISWTAL-------ICGSAHRGYSEDALSLFEMMQATGVKPNE--------------- 251 (400)
Q Consensus 197 ~~g~~~~A~~~~~~~~~~---~~~~~~~l-------~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--------------- 251 (400)
..++...|.+.|.+...- ....|..+ ...+...++..+++..+..-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 578888888888888763 23456555 3445555555555555544333 22221
Q ss_pred -------HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCcc----HH
Q 048364 252 -------MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPN----VI 320 (400)
Q Consensus 252 -------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~----~~ 320 (400)
.....+...+...|++++|.+.|+.+... .|+......+...+.+.+++++|+..|+.....|+ ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 12334556677888888888888887732 34333555666678888888888888887733332 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 321 IWGSFLAACKEHKQFDMAERVIKQALRMVK-PENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 321 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
.+..+..++...|++++|+..|++...... |.-..........++.+.|+.++|...|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 566677888888888888888888875432 2114456777888888888888888888888764
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.71 E-value=2.7e-07 Score=76.01 Aligned_cols=205 Identities=9% Similarity=-0.025 Sum_probs=104.1
Q ss_pred cCCChHHHHHHHhhCC--CC-ChhhHHHH-------HHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhc-c
Q 048364 93 KSGNVCEARDFFERMP--LR-NVASWSAM-------IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSH-L 161 (400)
Q Consensus 93 ~~~~~~~a~~~~~~~~--~~-~~~~~~~l-------~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~-~ 161 (400)
..++.+.|.+.|.+.. .| ....|+.+ ...+.+.++..+++..+..-. ++.|+... +... .
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l---~l~p~~l~------a~~~~~ 88 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV---QISMSTLN------ARIAIG 88 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT---TCCGGGGC------CEEECC
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh---cCChhhhh------hhhccC
Confidence 4677777777777765 22 44566666 345555555555555554443 44444211 0000 1
Q ss_pred cchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC--CCcccHHHHHHHHHhCCChhhHHHHH
Q 048364 162 GSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE--RNVISWTALICGSAHRGYSEDALSLF 239 (400)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~ 239 (400)
|-+.. +...+..-..+...+...+...|++++|.++|..+.. |+......+...+.+.+++++|+..|
T Consensus 89 g~y~~----------~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l 158 (282)
T 4f3v_A 89 GLYGD----------ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQV 158 (282)
T ss_dssp TTTCC----------CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred Ccccc----------cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 10000 0001111233445566777788888888888887764 32224444445666667777777766
Q ss_pred HHHHHCCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHhc-c
Q 048364 240 EMMQATGVKPN--EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR--IQHYGCMVDLFGKAGFLEEAYEVIRTM-R 314 (400)
Q Consensus 240 ~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~-~ 314 (400)
+...... .|. ...+..+..++...|++++|+..|++.... ...|. .........++.+.|+.++|...|+++ .
T Consensus 159 ~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 159 KSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5433221 110 124455555666666666666666666521 11132 223344455555556666666655555 3
Q ss_pred CCcc
Q 048364 315 LEPN 318 (400)
Q Consensus 315 ~~p~ 318 (400)
..|+
T Consensus 237 ~~P~ 240 (282)
T 4f3v_A 237 THPE 240 (282)
T ss_dssp HSCC
T ss_pred cCCc
Confidence 3444
No 139
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.70 E-value=5.3e-07 Score=71.41 Aligned_cols=157 Identities=11% Similarity=-0.040 Sum_probs=116.1
Q ss_pred HhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhc---CCCC-ChhhHHHHHHHHHhcCC
Q 048364 227 AHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY---DLEP-RIQHYGCMVDLFGKAGF 302 (400)
Q Consensus 227 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~ 302 (400)
...|++++|.++++.+... .......+..+...+...|++++|...+++..+.. +..+ ...++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4679999999966555432 22356788888999999999999999999877521 1222 34568888999999999
Q ss_pred hHHHHHHHHhc-c----C--Cc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCCchHHHHHHHHhhccc
Q 048364 303 LEEAYEVIRTM-R----L--EP--NVIIWGSFLAACKEHKQFDMAERVIKQALRMVK----PENDGGVFTLICDLYTMNE 369 (400)
Q Consensus 303 ~~~a~~~~~~~-~----~--~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g 369 (400)
+++|.+.+++. . . .| ....+..+...+...|++++|...+++..+... +.....++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999887 1 1 22 234678888999999999999999999886431 1111334678899999999
Q ss_pred chHHHHHHHHHHhcc
Q 048364 370 KWEGAERVRKLMLNQ 384 (400)
Q Consensus 370 ~~~~a~~~~~~m~~~ 384 (400)
++++|.+.+++..+.
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999888753
No 140
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.69 E-value=6.3e-07 Score=68.36 Aligned_cols=127 Identities=12% Similarity=-0.033 Sum_probs=81.8
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHH
Q 048364 218 SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297 (400)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (400)
.+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..+. .+.+...+..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 34455566666677777777777666542 224566667777777777777777777777743 233556677777777
Q ss_pred HhcCChHHHHHHHHhc-cCCc-cHHHH--HHHHHHHHhcCCHHHHHHHHHHHHH
Q 048364 298 GKAGFLEEAYEVIRTM-RLEP-NVIIW--GSFLAACKEHKQFDMAERVIKQALR 347 (400)
Q Consensus 298 ~~~g~~~~a~~~~~~~-~~~p-~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (400)
...|++++|...|++. ...| +...+ ...+..+...|++++|...+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 7888888888877776 3333 33333 3333346677788888877776654
No 141
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.69 E-value=1.2e-07 Score=70.49 Aligned_cols=94 Identities=12% Similarity=-0.026 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHh
Q 048364 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKE 331 (400)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~ 331 (400)
+..+...+.+.|++++|...|+.+... -+.+...|..+..+|...|++++|...|++. ...| +...+..+..+|..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 333444455555555555555555532 1223444555555555555555555555554 2223 23344445555555
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 048364 332 HKQFDMAERVIKQALRMV 349 (400)
Q Consensus 332 ~~~~~~a~~~~~~~~~~~ 349 (400)
.|++++|...++++++..
T Consensus 99 ~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 99 LGDLDGAESGFYSARALA 116 (142)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 555555555555555554
No 142
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.67 E-value=5.1e-07 Score=71.41 Aligned_cols=96 Identities=10% Similarity=-0.002 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHh
Q 048364 288 QHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365 (400)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 365 (400)
..+..+..+|...|++++|...+++. ...| +...+..+..+|...|++++|...|+++++.. | .+..++..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p-~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-P-NNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-T-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-C-CcHHHHHHHHHHH
Confidence 56777888888999999999998887 4444 56788888899999999999999999999998 8 7888899999999
Q ss_pred hcccchHHHH-HHHHHHhccc
Q 048364 366 TMNEKWEGAE-RVRKLMLNQN 385 (400)
Q Consensus 366 ~~~g~~~~a~-~~~~~m~~~~ 385 (400)
...|+.+++. ..+..|...+
T Consensus 167 ~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 8888888877 5566555433
No 143
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.66 E-value=2.3e-07 Score=67.37 Aligned_cols=93 Identities=12% Similarity=-0.011 Sum_probs=54.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhh
Q 048364 289 HYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366 (400)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 366 (400)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++.. | .++.++..++.++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p-~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-P-NFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C-CcHHHHHHHHHHHH
Confidence 3444555555666666666666555 3233 34555555666666666666666666666665 5 55566666666666
Q ss_pred cccchHHHHHHHHHHhc
Q 048364 367 MNEKWEGAERVRKLMLN 383 (400)
Q Consensus 367 ~~g~~~~a~~~~~~m~~ 383 (400)
..|++++|...+++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 66666666666665554
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.65 E-value=9.3e-08 Score=71.73 Aligned_cols=96 Identities=14% Similarity=0.050 Sum_probs=67.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 048364 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICD 363 (400)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 363 (400)
+...+..+...+...|++++|...|++. ...| +...|..+..+|...|++++|...++++++.. | .++.++..++.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p-~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-I-XEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T-TCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C-CCchHHHHHHH
Confidence 3445566666777777777777777766 3344 55566667777777777777777777777777 6 66777777777
Q ss_pred HhhcccchHHHHHHHHHHhc
Q 048364 364 LYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 364 ~~~~~g~~~~a~~~~~~m~~ 383 (400)
+|...|++++|...|++..+
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777776665
No 145
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.65 E-value=2.5e-07 Score=66.63 Aligned_cols=94 Identities=18% Similarity=0.047 Sum_probs=80.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhh
Q 048364 289 HYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366 (400)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 366 (400)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++.. | .+..++..++.+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P-~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-P-KDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHH
Confidence 4556777888999999999999988 4455 66788888889999999999999999999998 8 78889999999999
Q ss_pred cccchHHHHHHHHHHhcc
Q 048364 367 MNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 367 ~~g~~~~a~~~~~~m~~~ 384 (400)
..|++++|...+++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999888763
No 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.65 E-value=9.1e-07 Score=62.90 Aligned_cols=108 Identities=16% Similarity=0.114 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHH
Q 048364 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAAC 329 (400)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~ 329 (400)
..+..+...+...|++++|...++..... .+.+...+..+..++...|++++|...+++. ...| +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34555555666666666666666666532 1234555666666666666666666666665 3333 355566666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 048364 330 KEHKQFDMAERVIKQALRMVKPENDGGVFTLICD 363 (400)
Q Consensus 330 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 363 (400)
...|++++|...+++..+.. | .++..+..+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~-~-~~~~~~~~l~~ 114 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE-A-NNPQLKEGLQN 114 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-T-TCHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcC-C-CCHHHHHHHHH
Confidence 67777777777777776666 5 45555544443
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.64 E-value=3.4e-07 Score=70.91 Aligned_cols=115 Identities=10% Similarity=0.092 Sum_probs=48.3
Q ss_pred cCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHH-HHhcCCH--HHH
Q 048364 264 TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAA-CKEHKQF--DMA 338 (400)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~-~~~~~~~--~~a 338 (400)
.|++++|...++...+. .+.+...+..+..+|...|++++|...|++. ...| +...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 34444444444444421 1223344444444444444444444444444 1112 23333344444 3344444 444
Q ss_pred HHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 339 ERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
...++++++.. | .+..++..++.+|...|++++|...+++..
T Consensus 101 ~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 101 RAMIDKALALD-S-NEITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHHHHHHHC-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-C-CcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 44444444444 4 344444444444444444444444444443
No 148
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.62 E-value=1.8e-07 Score=68.14 Aligned_cols=95 Identities=8% Similarity=0.042 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc--------HHHHH
Q 048364 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN--------VIIWG 323 (400)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~--------~~~~~ 323 (400)
.+..+...+.+.|++++|+..|++..+- .+.+...|..+..+|...|++++|++.+++. .+.|+ ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 4445555566666666666666665532 1223455555666666666666666666554 22221 12444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 324 SFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 324 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
.+..++...|++++|+..|++.++..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 55555555666666666666655544
No 149
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.61 E-value=5.8e-07 Score=66.17 Aligned_cols=98 Identities=12% Similarity=-0.040 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHH
Q 048364 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLA 327 (400)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~ 327 (400)
+...+..+...+...|++++|...|+...+. .+.+...+..+..++...|++++|...+++. ...| +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4556666666666667777777776666642 1234556666666666666666666666665 3333 3455666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 048364 328 ACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
++...|++++|...++++.+..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHC
Confidence 6666666666666666666655
No 150
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.61 E-value=4.3e-07 Score=66.32 Aligned_cols=98 Identities=11% Similarity=0.063 Sum_probs=88.3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHH
Q 048364 285 PRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362 (400)
Q Consensus 285 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 362 (400)
.+...+..+...+...|++++|...|++. ...| +...+..+..++...|++++|...++++.+.. | .+..++..++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~-~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-P-TFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-C-CchHHHHHHH
Confidence 35667888999999999999999999998 5555 67788999999999999999999999999998 8 7889999999
Q ss_pred HHhhcccchHHHHHHHHHHhcc
Q 048364 363 DLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 363 ~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
.++...|++++|.+.+++..+.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999999999999998764
No 151
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.61 E-value=2.7e-07 Score=70.56 Aligned_cols=108 Identities=10% Similarity=0.041 Sum_probs=91.4
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHH
Q 048364 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLA 327 (400)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~ 327 (400)
+...+..+...+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|+..|++. .+.| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4567888888999999999999999999853 2346788999999999999999999999998 5555 5778899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHH
Q 048364 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361 (400)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 361 (400)
+|...|++++|...|+++++.. | .+...+...
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~-p-~~~~~~~~~ 119 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE-G-NGGSDAMKR 119 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH-S-SSCCHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-C-CchHHHHHH
Confidence 9999999999999999999998 7 666644433
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.61 E-value=4.3e-07 Score=67.50 Aligned_cols=96 Identities=11% Similarity=-0.008 Sum_probs=64.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 048364 287 IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDL 364 (400)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 364 (400)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++.. | .++..+..++.+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p-~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-I-NEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C-CCcHHHHHHHHH
Confidence 344555666667777777777777766 3344 45566666677777777777777777777776 6 666777777777
Q ss_pred hhcccchHHHHHHHHHHhcc
Q 048364 365 YTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 365 ~~~~g~~~~a~~~~~~m~~~ 384 (400)
|...|++++|...+++..+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777766543
No 153
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.60 E-value=6.3e-07 Score=64.48 Aligned_cols=96 Identities=20% Similarity=0.283 Sum_probs=86.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 048364 287 IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDL 364 (400)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 364 (400)
...+..+...+...|++++|.+.++++ ...| +..++..+...+...|++++|...++++.+.. | .+..++..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-P-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-C-ccHHHHHHHHHH
Confidence 567888899999999999999999998 3334 67788899999999999999999999999998 7 788999999999
Q ss_pred hhcccchHHHHHHHHHHhcc
Q 048364 365 YTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 365 ~~~~g~~~~a~~~~~~m~~~ 384 (400)
|...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999998764
No 154
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=2.1e-06 Score=63.95 Aligned_cols=111 Identities=8% Similarity=-0.053 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHH
Q 048364 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR----IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWG 323 (400)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~ 323 (400)
+...+..+...+...|++++|...|+...+ ..|+ ...+..+..+|...|++++|...+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 345555566666666666666666666662 2343 455666666777777777777777666 3334 455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHh
Q 048364 324 SFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY 365 (400)
Q Consensus 324 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 365 (400)
.+..++...|++++|...+++..+.. | .+..++..+....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~-p-~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLE-P-KNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-S-SCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-C-CcHHHHHHHHHHH
Confidence 66777777777777777777777776 6 5555555544443
No 155
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.58 E-value=7.7e-07 Score=67.95 Aligned_cols=95 Identities=8% Similarity=-0.052 Sum_probs=75.9
Q ss_pred cccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHH
Q 048364 216 VISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295 (400)
Q Consensus 216 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (400)
...+..+...+...|++++|+..|++..+.. +-+...+..+..++...|++++|...+++..+. .+.+...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 4567777888888899999999998888763 226677888888888889999999988888853 2335677888888
Q ss_pred HHHhcCChHHHHHHHHhc
Q 048364 296 LFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 296 ~~~~~g~~~~a~~~~~~~ 313 (400)
+|...|++++|.+.|++.
T Consensus 88 ~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 888899999999888887
No 156
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.58 E-value=1.3e-06 Score=78.32 Aligned_cols=192 Identities=8% Similarity=-0.122 Sum_probs=129.7
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCC-----c---------------ccHHHHHHHHHhCCChhhHHHHHHHHHHCC-CCCC
Q 048364 192 VDMYAKCGFLKYALMVFELMEERN-----V---------------ISWTALICGSAHRGYSEDALSLFEMMQATG-VKPN 250 (400)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~~~-----~---------------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~ 250 (400)
...+.+.|++++|.+.|..+.+.+ . .++..++..|...|++++|.+.+.++...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 344667788888888887776411 0 126677888889999999998888775531 1122
Q ss_pred HH----HHHHHHHHHHhcCChhhHHHHHHHhhhh---cCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhc-------cC
Q 048364 251 EM----TFTGVLTACVHTGLVDEGRKYFKMIDEE---YDLEP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM-------RL 315 (400)
Q Consensus 251 ~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~ 315 (400)
.. ..+.+-..+...|+.+.|..+++..... .+..+ -..++..+...|...|++++|..++++. +-
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 21 2222333344567888888888766532 12222 2456778888999999999999988876 11
Q ss_pred Cc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC---CchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 316 EP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVK--PEN---DGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 316 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
.| ...++..++..|...|++++|..++++...... +.+ ....+..++..+...|++++|...+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 22 345788888999999999999999988876431 211 134566777788888999999887776654
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.58 E-value=7.9e-07 Score=63.22 Aligned_cols=97 Identities=14% Similarity=0.202 Sum_probs=86.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 048364 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICD 363 (400)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 363 (400)
....+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++.+.. | .+...+..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~-~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-P-DWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-c-ccHHHHHHHHH
Confidence 3456778889999999999999999998 4444 67788889999999999999999999999998 8 78899999999
Q ss_pred HhhcccchHHHHHHHHHHhcc
Q 048364 364 LYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 364 ~~~~~g~~~~a~~~~~~m~~~ 384 (400)
++...|++++|.+.+++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 999999999999999998764
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=9.4e-07 Score=65.89 Aligned_cols=98 Identities=11% Similarity=0.025 Sum_probs=88.4
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHH
Q 048364 285 PRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN----VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359 (400)
Q Consensus 285 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 359 (400)
.+...+..+...+...|++++|.+.|++. ...|+ ...+..+..+|...|++++|...+++..+.. | .+...+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~-~~~~~~~ 103 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-G-GDVKALY 103 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-S-CCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-c-cCHHHHH
Confidence 35667888899999999999999999998 66776 6788889999999999999999999999998 8 7889999
Q ss_pred HHHHHhhcccchHHHHHHHHHHhcc
Q 048364 360 LICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 360 ~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
.+..+|...|++++|...+++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999999998764
No 159
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.56 E-value=1.1e-06 Score=75.85 Aligned_cols=94 Identities=6% Similarity=-0.059 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHH
Q 048364 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAAC 329 (400)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~ 329 (400)
..|..+..++.+.|++++|...++++.+. .+.+...+..+..+|...|++++|...|++. .+.| +...+..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 45666666677777777777777776642 2335566667777777777777777777766 4444 445666666777
Q ss_pred HhcCCHHHH-HHHHHHHHH
Q 048364 330 KEHKQFDMA-ERVIKQALR 347 (400)
Q Consensus 330 ~~~~~~~~a-~~~~~~~~~ 347 (400)
...|+.++| ...++.|..
T Consensus 275 ~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 777777766 345555543
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.54 E-value=1e-06 Score=63.96 Aligned_cols=94 Identities=15% Similarity=0.093 Sum_probs=49.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC------chHHHH
Q 048364 289 HYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND------GGVFTL 360 (400)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~ 360 (400)
.+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..++++++.. |... ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG-RETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC-cccchhhHHHHHHHHH
Confidence 3444555555555566555555555 3333 34455555555555555666555555555544 3111 124455
Q ss_pred HHHHhhcccchHHHHHHHHHHhc
Q 048364 361 ICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 361 l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
++.++...|++++|++.|++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555555555443
No 161
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.53 E-value=1.7e-06 Score=62.77 Aligned_cols=93 Identities=12% Similarity=0.003 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFELMEE---RNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 261 (400)
...+..+...+...|++++|...|++..+ .+...+..+...+...|++++|...+++..... +.+...+..+..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 34444445555555555555555544432 123334444444444444444444444444331 11233444444444
Q ss_pred HhcCChhhHHHHHHHhh
Q 048364 262 VHTGLVDEGRKYFKMID 278 (400)
Q Consensus 262 ~~~~~~~~a~~~~~~~~ 278 (400)
...|++++|...++...
T Consensus 91 ~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHH
Confidence 44444444444444444
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.52 E-value=1.2e-06 Score=63.62 Aligned_cols=110 Identities=7% Similarity=0.010 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc----c----HHHH
Q 048364 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP----N----VIIW 322 (400)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p----~----~~~~ 322 (400)
..+..+...+...|++++|...++...+. .+.+...+..+..+|...|++++|...+++. ...| + ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 34555666666777777777777776642 2334556666777777777777777777766 2222 1 5567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhh
Q 048364 323 GSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYT 366 (400)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 366 (400)
..+..++...|++++|...++++.+.. | ++.....+..+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~--~~~~~~~l~~~~~ 123 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH-R--TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-C--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-C--CHHHHHHHHHHHH
Confidence 777777888888888888888888776 4 4555555544443
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.52 E-value=1.7e-06 Score=63.57 Aligned_cols=96 Identities=10% Similarity=-0.039 Sum_probs=60.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 048364 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICD 363 (400)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 363 (400)
+...+..+...+...|++++|...|++. ...| +...|..+..++...|++++|...++++++.. | .++.++..++.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p-~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-G-QSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-c-hhHHHHHHHHH
Confidence 4455666666666666666666666665 3333 34556666666666666666666666666666 5 55666666666
Q ss_pred HhhcccchHHHHHHHHHHhc
Q 048364 364 LYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 364 ~~~~~g~~~~a~~~~~~m~~ 383 (400)
+|...|++++|...+++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666666654
No 164
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.52 E-value=2e-07 Score=73.80 Aligned_cols=128 Identities=12% Similarity=-0.024 Sum_probs=72.9
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHCCCC-C--------------CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCC
Q 048364 219 WTALICGSAHRGYSEDALSLFEMMQATGVK-P--------------NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDL 283 (400)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p--------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 283 (400)
+..+...+...|++++|+..|++....... | ....+..+..++...|++++|...++...+. .
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~ 118 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--D 118 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--C
Confidence 344444555555555555555555443111 1 0256666777777788888888888777743 2
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHc
Q 048364 284 EPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAE-RVIKQALRM 348 (400)
Q Consensus 284 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~ 348 (400)
+.+...+..+..+|...|++++|.+.|++. .+.| +...+..+..++...++.+++. ..+..+...
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345667777777888888888888888776 4444 4456666666666666666555 444444433
No 165
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.51 E-value=1.3e-06 Score=63.28 Aligned_cols=95 Identities=12% Similarity=-0.039 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHH
Q 048364 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACK 330 (400)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~ 330 (400)
.+......+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|...+++. .+.| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3444555555666666666666665532 1234455666666666666666666666665 3333 3445566666666
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 048364 331 EHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 331 ~~~~~~~a~~~~~~~~~~~ 349 (400)
..|++++|...++++.+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 6666666666666666554
No 166
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.50 E-value=3.7e-06 Score=75.24 Aligned_cols=207 Identities=8% Similarity=-0.034 Sum_probs=130.1
Q ss_pred HHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhc
Q 048364 119 IAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKC 198 (400)
Q Consensus 119 ~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (400)
.+.+.+.|++++|++.|.++.+...-..+... ..+.... .. ......+..++..|...
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~---------~~~~~~~--~~-----------~~~~~al~~l~~~y~~~ 68 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAA---------GASVDDK--RR-----------NEQETSILELGQLYVTM 68 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSS---------SSSBCSH--HH-----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHH---------HHHHHHH--Hh-----------hhHHHHHHHHHHHHHHC
Confidence 45677889999999999998843322222100 0000000 00 00122355677888888
Q ss_pred CCHHHHHHHHHhccC-----CCc----ccHHHHHHHHHhCCChhhHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhc
Q 048364 199 GFLKYALMVFELMEE-----RNV----ISWTALICGSAHRGYSEDALSLFEMMQA----TGVKPN-EMTFTGVLTACVHT 264 (400)
Q Consensus 199 g~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~p~-~~~~~~l~~~~~~~ 264 (400)
|++++|.+.+..+.+ ++. ...+.+...+...|+++.|..++++... .+..+. ..++..+...+...
T Consensus 69 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 148 (434)
T 4b4t_Q 69 GAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQK 148 (434)
T ss_dssp TCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHc
Confidence 888888888877654 111 1233333444556788888888877653 233333 35667788888888
Q ss_pred CChhhHHHHHHHhhhhcCCCC----ChhhHHHHHHHHHhcCChHHHHHHHHhc-------cCCcc--HHHHHHHHHHHHh
Q 048364 265 GLVDEGRKYFKMIDEEYDLEP----RIQHYGCMVDLFGKAGFLEEAYEVIRTM-------RLEPN--VIIWGSFLAACKE 331 (400)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~p~--~~~~~~l~~~~~~ 331 (400)
|++++|..+++.+........ ...++..++..|...|++++|..++++. +..|. ...+..+...+..
T Consensus 149 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~ 228 (434)
T 4b4t_Q 149 KQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCE 228 (434)
T ss_dssp TCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS
T ss_pred cChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Confidence 899888888887764322111 2356777888888889998888888776 11122 2456666777778
Q ss_pred cCCHHHHHHHHHHHHH
Q 048364 332 HKQFDMAERVIKQALR 347 (400)
Q Consensus 332 ~~~~~~a~~~~~~~~~ 347 (400)
.|++++|...+.+..+
T Consensus 229 ~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 229 DKDYKTAFSYFFESFE 244 (434)
T ss_dssp SSCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 8888888888877765
No 167
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.49 E-value=8.9e-07 Score=64.36 Aligned_cols=101 Identities=12% Similarity=0.055 Sum_probs=71.3
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhhhcCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHhc-cCCcc----HHHHHHHH
Q 048364 255 TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRI---QHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPN----VIIWGSFL 326 (400)
Q Consensus 255 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~----~~~~~~l~ 326 (400)
..+...+...|++++|...|+.+.+.. +.+. ..+..+..++...|++++|...|++. ...|+ ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 345566777888888888888887532 2222 46667778888888888888888877 33443 45677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHH
Q 048364 327 AACKEHKQFDMAERVIKQALRMVKPENDGGVFT 359 (400)
Q Consensus 327 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 359 (400)
.++...|++++|...++++++.. | .++....
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~-p-~~~~~~~ 114 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQY-P-GSDAARV 114 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-T-TSHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-C-CChHHHH
Confidence 78888888888888888888877 6 4444433
No 168
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.47 E-value=7.1e-05 Score=63.79 Aligned_cols=145 Identities=10% Similarity=-0.004 Sum_probs=74.6
Q ss_pred CHHHHHHHHHhccCCCc---ccHHHHHHHHHhCCChh--------hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--
Q 048364 200 FLKYALMVFELMEERNV---ISWTALICGSAHRGYSE--------DALSLFEMMQATGVKPNEMTFTGVLTACVHTGL-- 266 (400)
Q Consensus 200 ~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-- 266 (400)
+++++.++++++.+.++ .+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.....+.+.++
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 55667777777666433 33333333333333344 677777777665432 55666666655555554
Q ss_pred -----hhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCCh--------------------HHHHHHHHhc-cC-----
Q 048364 267 -----VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFL--------------------EEAYEVIRTM-RL----- 315 (400)
Q Consensus 267 -----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~-~~----- 315 (400)
++++.+.++++... .+-|...|+.+-..+.+.|+. ....++..++ +.
T Consensus 219 ~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred cchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 45666666666532 233555566555555554443 2233333333 11
Q ss_pred --CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048364 316 --EPNVIIWGSFLAACKEHKQFDMAERVIKQALR 347 (400)
Q Consensus 316 --~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (400)
.++...+..++..|...|+.++|.++++.+.+
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 23455556666666666666666666666653
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.47 E-value=1.2e-06 Score=61.71 Aligned_cols=96 Identities=13% Similarity=-0.065 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc---cHHHHHHHHH
Q 048364 252 MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP---NVIIWGSFLA 327 (400)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p---~~~~~~~l~~ 327 (400)
..+..+...+...|++++|...++++.+. .+.+...+..+..++...|++++|.+.+++. ...| +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34445555566666666666666666532 1234455666666677777777777777666 3333 3556666777
Q ss_pred HHHhc-CCHHHHHHHHHHHHHcC
Q 048364 328 ACKEH-KQFDMAERVIKQALRMV 349 (400)
Q Consensus 328 ~~~~~-~~~~~a~~~~~~~~~~~ 349 (400)
++... |++++|.+.++++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 77777 77777777777777766
No 170
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.47 E-value=3.1e-06 Score=76.31 Aligned_cols=130 Identities=13% Similarity=0.027 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC-------------hhhHHHHHHHHHhcCChHHHHHHHHhc-cCC
Q 048364 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR-------------IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLE 316 (400)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~ 316 (400)
...+..+...+.+.|++++|...|+++.+.....++ ...|..+..+|.+.|++++|+..+++. .+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 345666777777788888888888877743211111 477888999999999999999999988 444
Q ss_pred c-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHH-HHHHHh
Q 048364 317 P-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAER-VRKLML 382 (400)
Q Consensus 317 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~ 382 (400)
| +...|..+..+|...|++++|...|+++++.. | .+..++..+..++.+.|+++++.+ .++.|.
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-P-QNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 57788889999999999999999999999998 8 788899999999999999888764 455554
No 171
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.45 E-value=6e-07 Score=81.31 Aligned_cols=117 Identities=12% Similarity=0.040 Sum_probs=89.6
Q ss_pred HHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHH
Q 048364 259 TACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFD 336 (400)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 336 (400)
..+.+.|++++|.+.++++.+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3455678888888888888753 2335677888888888889999998888887 5555 5667888888999999999
Q ss_pred HHHHHHHHHHHcCCCCCCchHHHHHHHH--hhcccchHHHHHHHH
Q 048364 337 MAERVIKQALRMVKPENDGGVFTLICDL--YTMNEKWEGAERVRK 379 (400)
Q Consensus 337 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 379 (400)
+|...++++.+.. | .+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~-p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-P-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-T-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999988 7 677777777777 788899999998887
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.45 E-value=5.2e-06 Score=60.17 Aligned_cols=91 Identities=12% Similarity=-0.008 Sum_probs=47.7
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC---hhhHHHH
Q 048364 220 TALICGSAHRGYSEDALSLFEMMQATGVKPNE---MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR---IQHYGCM 293 (400)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l 293 (400)
..+...+...|++++|...|++..+.... +. ..+..+..++...|++++|...++.+.+.. +.+ ...+..+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~l 82 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHH
Confidence 33445555566666666666665553211 11 244455555556666666666666555321 112 3345555
Q ss_pred HHHHHhcCChHHHHHHHHhc
Q 048364 294 VDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~ 313 (400)
..+|...|++++|...|+++
T Consensus 83 a~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 55566666666666666555
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.44 E-value=1.3e-06 Score=66.05 Aligned_cols=131 Identities=12% Similarity=0.004 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHhc-c----C--Cc-cHH
Q 048364 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR----IQHYGCMVDLFGKAGFLEEAYEVIRTM-R----L--EP-NVI 320 (400)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~-~----~--~p-~~~ 320 (400)
++..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|.+.+++. . . .+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4445555556666666666666555432110111 135566666777777777777777665 1 1 11 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCCchHHHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 321 IWGSFLAACKEHKQFDMAERVIKQALRMVK----PENDGGVFTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 321 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
.+..+...+...|++++|...+++..+... +.....++..+...|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566777777888888888888887776421 112245677778888888888888888877664
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.44 E-value=1.7e-06 Score=65.37 Aligned_cols=97 Identities=12% Similarity=0.025 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC----ChhhHHHHHHHHHhcCChHHHHHHHHhc-------cCCc-cHH
Q 048364 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP----RIQHYGCMVDLFGKAGFLEEAYEVIRTM-------RLEP-NVI 320 (400)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~p-~~~ 320 (400)
++..+...+...|++++|...++...+...-.+ ....+..+...+...|++++|.+.+++. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 444455555555666666655555442111011 1334556666677777777777777665 1111 234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 321 IWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 321 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
.+..+...+...|++++|...+++..+..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 56777778888888888888888877654
No 175
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.42 E-value=1.6e-06 Score=64.51 Aligned_cols=61 Identities=15% Similarity=0.058 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCCchHH----HHHHHHhhcccchHHHHHHHHHHhc
Q 048364 321 IWGSFLAACKEHKQFDMAERVIKQALRM-------VKPENDGGVF----TLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 321 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
.|..+..++.+.|++++|+..+++.++. . | .+...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-Q-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-S-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-C-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666666666777777777777777766 6 6 566666 6777777777777777777766654
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.41 E-value=1.4e-06 Score=63.29 Aligned_cols=97 Identities=14% Similarity=0.146 Sum_probs=84.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC-------chH
Q 048364 287 IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND-------GGV 357 (400)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~ 357 (400)
...+..+...+...|++++|...|++. ...| +...+..+...+...|++++|...++++.+.. | .+ ..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~-~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-R-ENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-H-HSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-c-ccchhHHHHHHH
Confidence 356778889999999999999999998 3344 67788899999999999999999999999987 5 34 788
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHhccc
Q 048364 358 FTLICDLYTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 358 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 385 (400)
+..++.+|...|++++|.+.+++..+..
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 9999999999999999999999988743
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.38 E-value=2.4e-06 Score=61.40 Aligned_cols=94 Identities=9% Similarity=0.017 Sum_probs=62.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHh
Q 048364 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKE 331 (400)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~ 331 (400)
+..+...+.+.|++++|...++.+.+. -+.+...|..+..++...|++++|+..|++. .+.| +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344555666777777777777777642 2335566677777777777777777777776 4445 45566777777777
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 048364 332 HKQFDMAERVIKQALRMV 349 (400)
Q Consensus 332 ~~~~~~a~~~~~~~~~~~ 349 (400)
.|++++|...++++++..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 777777777777777766
No 178
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.38 E-value=2.2e-06 Score=65.26 Aligned_cols=110 Identities=18% Similarity=0.037 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhhhc------C----------CCCChhhHHHHHHHHHhcCChHHHHHHHHhc-
Q 048364 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEY------D----------LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM- 313 (400)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~- 313 (400)
...+......+.+.|++++|...|+...... . .+.+...|..+..+|.+.|++++|...+++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4566777778888899999999988877420 0 1112356777788888888888888888877
Q ss_pred cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc-hHHHHHH
Q 048364 314 RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG-GVFTLIC 362 (400)
Q Consensus 314 ~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~ 362 (400)
.+.| +...|..+..+|...|++++|...|+++++.. | .+. .....+.
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-p-~~~~~~~~~l~ 139 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH-P-AAASVVAREMK 139 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-G-GGHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC-C-CCHHHHHHHHH
Confidence 4445 46677778888888888888888888888887 6 444 3333333
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.34 E-value=8.1e-07 Score=63.51 Aligned_cols=91 Identities=11% Similarity=0.115 Sum_probs=64.9
Q ss_pred hcCChhhHHHHHHHhhhhcC--CCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHH
Q 048364 263 HTGLVDEGRKYFKMIDEEYD--LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMA 338 (400)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 338 (400)
..|++++|+..|++..+. + -+.+...+..+..+|...|++++|.+.|++. ...| +...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence 357888888888888742 1 1224567788888888888888888888887 4445 466777788888888888888
Q ss_pred HHHHHHHHHcCCCCCCch
Q 048364 339 ERVIKQALRMVKPENDGG 356 (400)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~ 356 (400)
...+++.++.. | .++.
T Consensus 81 ~~~~~~al~~~-p-~~~~ 96 (117)
T 3k9i_A 81 VELLLKIIAET-S-DDET 96 (117)
T ss_dssp HHHHHHHHHHH-C-CCHH
T ss_pred HHHHHHHHHhC-C-CcHH
Confidence 88888888887 6 4443
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.34 E-value=6.4e-06 Score=71.89 Aligned_cols=89 Identities=13% Similarity=0.073 Sum_probs=77.7
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 048364 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICD 363 (400)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 363 (400)
+..+|..+..+|.+.|++++|.+.+++. ...| +...|..+..+|...|++++|...++++.+.. | .+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P-~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-P-EDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-C-CCHHHHHHHHH
Confidence 4567888999999999999999999988 5566 56788889999999999999999999999998 8 78888999999
Q ss_pred HhhcccchHHHHH
Q 048364 364 LYTMNEKWEGAER 376 (400)
Q Consensus 364 ~~~~~g~~~~a~~ 376 (400)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9988888887765
No 181
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.33 E-value=0.00023 Score=60.29 Aligned_cols=131 Identities=15% Similarity=0.078 Sum_probs=57.0
Q ss_pred HhcCCcc-hHHHHHHHHHhcCCCCCCHHH-HHHHHHHhhcccc----------hhhhhhhhhhhHHHhccccchHHHHHH
Q 048364 123 LNAGAYD-PGLKLFREMISNEGLTPDQMT-IGAVLSGCSHLGS----------VGLLMGKSAHGFIVKNEWELNEQIATI 190 (400)
Q Consensus 123 ~~~g~~~-~a~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (400)
.+.|.++ +|+++++.+. .+.|+..| |+.--..+...+. ++. +..+++.+.... +-+..+|+-
T Consensus 40 ~~~~e~s~eaL~~t~~~L---~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~--EL~~~~~~L~~~-PKny~aW~h 113 (331)
T 3dss_A 40 RQAGELDESVLELTSQIL---GANPDFATLWNCRREVLQHLETEKSPEESAALVKA--ELGFLESCLRVN-PKSYGTWHH 113 (331)
T ss_dssp HHTTCCSHHHHHHHHHHH---TTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH--HHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHH---HHCchhHHHHHHHHHHHHHhcccccchhhhHHHHH--HHHHHHHHHHhC-CCCHHHHHH
Confidence 3455554 6777777777 44565443 3332222222211 222 333333333322 123334443
Q ss_pred HHHHHHhcC--CHHHHHHHHHhccCC---CcccHHHHHHHHHhCCC-hhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048364 191 LVDMYAKCG--FLKYALMVFELMEER---NVISWTALICGSAHRGY-SEDALSLFEMMQATGVKPNEMTFTGVLTA 260 (400)
Q Consensus 191 l~~~~~~~g--~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 260 (400)
-..++...| .++++..+++++.+. |..+|+.-.-.+...|. ++++++.++++.+..+. |...|+.....
T Consensus 114 R~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~l 188 (331)
T 3dss_A 114 RCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCL 188 (331)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 333444444 255555555555542 33344433334444444 35555555555554322 34444443333
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.32 E-value=3.3e-06 Score=64.19 Aligned_cols=102 Identities=12% Similarity=-0.010 Sum_probs=72.6
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHHC--------CC--------CC-CHHHHHHHHHHHHhcCChhhHHHHHHHhhh
Q 048364 217 ISWTALICGSAHRGYSEDALSLFEMMQAT--------GV--------KP-NEMTFTGVLTACVHTGLVDEGRKYFKMIDE 279 (400)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--------~~--------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (400)
..+......+.+.|++++|+..|.+.... .. .| +...|..+..++.+.|++++|...++.+.+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 35666777788888888888888887664 00 11 235677777788888888888888888874
Q ss_pred hcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHH
Q 048364 280 EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVI 320 (400)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~ 320 (400)
. -+.+...|..+..+|...|++++|...|++. .+.|+..
T Consensus 92 ~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 92 R--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp H--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred c--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 2 2335667778888888888888888888877 5566543
No 183
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.32 E-value=4.1e-06 Score=70.20 Aligned_cols=99 Identities=12% Similarity=-0.042 Sum_probs=85.2
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHH
Q 048364 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLA 327 (400)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~ 327 (400)
+...+..+...+...|++++|...|+.+.+. .+.+...|..+..+|.+.|++++|...+++. ...| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 5567788888999999999999999999853 2336788889999999999999999999988 5566 5678888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 328 ACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
++...|++++|...++++.+.. |
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~-p 103 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA-K 103 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH-H
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-c
Confidence 9999999999999999999887 6
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.29 E-value=1.6e-06 Score=61.88 Aligned_cols=83 Identities=13% Similarity=0.130 Sum_probs=46.2
Q ss_pred CCChhhHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHH
Q 048364 229 RGYSEDALSLFEMMQATGV--KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEA 306 (400)
Q Consensus 229 ~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 306 (400)
.|++++|+..|++..+.+. +-+...+..+..++...|++++|...+++..+. .+.+...+..+..++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence 4566666666666665431 112345556666666666666666666666642 122455566666666666666666
Q ss_pred HHHHHhc
Q 048364 307 YEVIRTM 313 (400)
Q Consensus 307 ~~~~~~~ 313 (400)
...+++.
T Consensus 81 ~~~~~~a 87 (117)
T 3k9i_A 81 VELLLKI 87 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666655
No 185
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.28 E-value=7.3e-05 Score=63.69 Aligned_cols=192 Identities=12% Similarity=0.020 Sum_probs=130.7
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHhccCCC---cccHHHHHHHHHhC-C-ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048364 188 ATILVDMYAKCG-FLKYALMVFELMEERN---VISWTALICGSAHR-G-YSEDALSLFEMMQATGVKPNEMTFTGVLTAC 261 (400)
Q Consensus 188 ~~~l~~~~~~~g-~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~-~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 261 (400)
|+.--.++...| .+++++++++.+...+ ..+|+.-...+... + ++++++++++++.+...+ |...|+.-...+
T Consensus 91 Wn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl 169 (349)
T 3q7a_A 91 WQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLY 169 (349)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 333333444455 5888899888887644 44555555555554 6 889999999999886433 667777666666
Q ss_pred HhcCChh--------hHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCC-------hHHHHHHHHhc-cCCc-cHHHHHH
Q 048364 262 VHTGLVD--------EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF-------LEEAYEVIRTM-RLEP-NVIIWGS 324 (400)
Q Consensus 262 ~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~a~~~~~~~-~~~p-~~~~~~~ 324 (400)
.+.+.++ ++.+.++++.+. -+-|...|+.....+.+.++ ++++++.+++. ...| |...|+.
T Consensus 170 ~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Y 247 (349)
T 3q7a_A 170 SHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNY 247 (349)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 6666666 889999998853 24577888888888888876 68888888877 5556 5667776
Q ss_pred HHHHHHhcCCH--------------------HHHHHHHHHHHHcC----CCCCCchHHHHHHHHhhcccchHHHHHHHHH
Q 048364 325 FLAACKEHKQF--------------------DMAERVIKQALRMV----KPENDGGVFTLICDLYTMNEKWEGAERVRKL 380 (400)
Q Consensus 325 l~~~~~~~~~~--------------------~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 380 (400)
+-..+.+.|+. .....+..++.... ....++.+...++..|...|+.++|.++++.
T Consensus 248 lr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~ 327 (349)
T 3q7a_A 248 LRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEK 327 (349)
T ss_dssp HHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 66666665543 33334444333322 0126788899999999999999999999999
Q ss_pred Hh
Q 048364 381 ML 382 (400)
Q Consensus 381 m~ 382 (400)
+.
T Consensus 328 l~ 329 (349)
T 3q7a_A 328 LS 329 (349)
T ss_dssp HH
T ss_pred HH
Confidence 85
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.25 E-value=1.8e-06 Score=74.52 Aligned_cols=146 Identities=14% Similarity=0.004 Sum_probs=77.4
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHH
Q 048364 217 ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296 (400)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 296 (400)
..+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ . ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHHH
Confidence 44666777777888888888888887664 343321 11222333322211 1 1367778888
Q ss_pred HHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHh-hcccchHH
Q 048364 297 FGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLY-TMNEKWEG 373 (400)
Q Consensus 297 ~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~ 373 (400)
|.+.|++++|...+++. ...| +...|..+..+|...|++++|...|+++++.. | .+..++..+.... ...+..+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p-~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-P-DDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-C-CCHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999888887 4455 56788888888999999999999999988887 7 6777777777663 34566777
Q ss_pred HHHHHHHHhcc
Q 048364 374 AERVRKLMLNQ 384 (400)
Q Consensus 374 a~~~~~~m~~~ 384 (400)
+...+++|...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 78888877654
No 187
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.22 E-value=1.1e-06 Score=61.81 Aligned_cols=94 Identities=12% Similarity=0.030 Sum_probs=73.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC------chH
Q 048364 286 RIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPEND------GGV 357 (400)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~ 357 (400)
+...+..+...+...|++++|.+.|++. ...| +...+..+..++...|++++|...++++++.. | .+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p-~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-S-TAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-S-STTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C-CccHHHHHHHH
Confidence 4456777888888899999999988887 4444 56778888889999999999999999999888 7 55 667
Q ss_pred HHHHHHHhhcccchHHHHHHHHHH
Q 048364 358 FTLICDLYTMNEKWEGAERVRKLM 381 (400)
Q Consensus 358 ~~~l~~~~~~~g~~~~a~~~~~~m 381 (400)
+..+..++...|+++.|...++++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHhHhhhHhHHHHh
Confidence 777777888778777776555443
No 188
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.21 E-value=6.8e-06 Score=74.07 Aligned_cols=124 Identities=12% Similarity=0.027 Sum_probs=94.3
Q ss_pred HHHhcCChhhHHHHHHHhhhhcC--C---CC-ChhhHHHHHHHHHhcCChHHHHHHHHhc---------cCCccH-HHHH
Q 048364 260 ACVHTGLVDEGRKYFKMIDEEYD--L---EP-RIQHYGCMVDLFGKAGFLEEAYEVIRTM---------RLEPNV-IIWG 323 (400)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~--~---~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~---------~~~p~~-~~~~ 323 (400)
.+...|++++|+.++++..+... + .| ...+++.|...|...|++++|+.++++. ...|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35578999999988887764321 1 12 2467889999999999999999988876 334544 4789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCCch---HHHHHHHHhhcccchHHHHHHHHHHhccc
Q 048364 324 SFLAACKEHKQFDMAERVIKQALR-----MVKPENDGG---VFTLICDLYTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 324 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 385 (400)
.|...|..+|++++|+.+++++++ .| | .++. +...+..++...|.+++|..++.++.+.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG-~-~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHG-P-SHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-T-TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998876 34 4 4443 44567778888899999999999987643
No 189
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.16 E-value=1.9e-05 Score=71.48 Aligned_cols=116 Identities=11% Similarity=-0.043 Sum_probs=76.5
Q ss_pred HHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh
Q 048364 193 DMYAKCGFLKYALMVFELMEE--R-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE 269 (400)
Q Consensus 193 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 269 (400)
..+.+.|++++|.+.|++..+ | +...|..+..+|.+.|++++|+..+++..+.. +-+...+..+..++...|++++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 345567778888887777654 2 45667777778888888888888888877763 2255677777777888888888
Q ss_pred HHHHHHHhhhhcCCCCChhhHHHHHHH--HHhcCChHHHHHHHH
Q 048364 270 GRKYFKMIDEEYDLEPRIQHYGCMVDL--FGKAGFLEEAYEVIR 311 (400)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 311 (400)
|.+.++++.+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888777532 2233445555555 777788888888777
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.15 E-value=8.9e-06 Score=70.13 Aligned_cols=150 Identities=12% Similarity=0.026 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048364 184 NEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVH 263 (400)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 263 (400)
....+..+...+.+.|++++|...|++..+.+.... .+...|+.+++...+. ...|..+..++.+
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~ 242 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 345677788889999999999999998765222111 1223344444433221 1367778888899
Q ss_pred cCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccH-HHHHHHHHH-HHhcCCHHHHHH
Q 048364 264 TGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNV-IIWGSFLAA-CKEHKQFDMAER 340 (400)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~-~~~~~l~~~-~~~~~~~~~a~~ 340 (400)
.|++++|...++...+. .+.+...|..+..+|...|++++|...|++. .+.|+. ..+..+... ....+..+.+..
T Consensus 243 ~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988853 2346778888999999999999999999988 666643 344444444 234566778888
Q ss_pred HHHHHHHcCCC
Q 048364 341 VIKQALRMVKP 351 (400)
Q Consensus 341 ~~~~~~~~~~~ 351 (400)
.|.++.... |
T Consensus 321 ~~~~~l~~~-p 330 (338)
T 2if4_A 321 MYKGIFKGK-D 330 (338)
T ss_dssp -----------
T ss_pred HHHHhhCCC-C
Confidence 888888776 5
No 191
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.14 E-value=2.9e-05 Score=69.96 Aligned_cols=95 Identities=8% Similarity=-0.032 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHH
Q 048364 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAA 328 (400)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~ 328 (400)
...|..+..++.+.|++++|...++++.+. .+.+...|..+..+|...|++++|...|++. .+.| +...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 356667777777778888888777777742 2335667777777788888888888887777 5555 34466677777
Q ss_pred HHhcCCHHHHH-HHHHHHHH
Q 048364 329 CKEHKQFDMAE-RVIKQALR 347 (400)
Q Consensus 329 ~~~~~~~~~a~-~~~~~~~~ 347 (400)
+.+.++.+++. ..++.|..
T Consensus 395 ~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 77777776665 33444443
No 192
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.12 E-value=0.00053 Score=58.13 Aligned_cols=218 Identities=9% Similarity=-0.022 Sum_probs=144.0
Q ss_pred hcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCC----------HHHHHHHHHhccC---CCcccHHHHHHH
Q 048364 159 SHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGF----------LKYALMVFELMEE---RNVISWTALICG 225 (400)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~---~~~~~~~~l~~~ 225 (400)
.+.|.++.. |......+...... +..+|+.--.++...+. ++++..+++.+.. .+..+|+.-.-.
T Consensus 40 ~~~~e~s~e-aL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDES-VLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHH-HHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHcCCCCHH-HHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 344444421 66666666665432 33444433333333222 5778888888776 355566666666
Q ss_pred HHhCC--ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhc--
Q 048364 226 SAHRG--YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL-VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKA-- 300 (400)
Q Consensus 226 ~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 300 (400)
+...+ .+++++..++++.+.... |...|+.-..++...|. ++++.+.++.+.+. -+-|...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhh
Confidence 66777 478999999999987533 77778777777778888 58999999999853 244677787777666655
Q ss_pred ------------CChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCCCc
Q 048364 301 ------------GFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEH-----------KQFDMAERVIKQALRMVKPENDG 355 (400)
Q Consensus 301 ------------g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~ 355 (400)
+.++++++.+.+. ...| |...|+-+-..+.+. +.++++++.++++.+.. | .+.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~-p-d~~ 272 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE-P-ENK 272 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC-T-TCH
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC-c-ccc
Confidence 4577888888887 4455 555665544444443 45789999999999999 8 554
Q ss_pred hHHHHHHHH---hhcccchHHHHHHHHHHhc
Q 048364 356 GVFTLICDL---YTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 356 ~~~~~l~~~---~~~~g~~~~a~~~~~~m~~ 383 (400)
..+..++.. ....|..+++...+.++++
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 444444332 2245777888888888875
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.09 E-value=0.00021 Score=66.01 Aligned_cols=170 Identities=12% Similarity=-0.013 Sum_probs=132.4
Q ss_pred CCHHHHHHHHHhccCCC---cccHHHHHHHHHhCCC----------hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048364 199 GFLKYALMVFELMEERN---VISWTALICGSAHRGY----------SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG 265 (400)
Q Consensus 199 g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 265 (400)
...++|.+.++++.+-+ ..+|+.--.++...|+ ++++++.++++.+...+ +..+|..-..++.+.+
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 34567889998887633 3456655555656666 89999999999887433 6677888788888888
Q ss_pred --ChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcC-ChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhc--------
Q 048364 266 --LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG-FLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEH-------- 332 (400)
Q Consensus 266 --~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~-------- 332 (400)
+++++.+.++++.+. -+-+..+|+.-...+.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 669999999999963 2446778888888888888 899999999988 5556 566777766666553
Q ss_pred ------CCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHH
Q 048364 333 ------KQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEG 373 (400)
Q Consensus 333 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 373 (400)
+.++++.+.+++++... | .+..+|..+...+...+++++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~-P-~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD-P-NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC-S-SCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhC-C-CCccHHHHHHHHHhcCCCccc
Confidence 56899999999999999 9 899999999999988887554
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.08 E-value=9.5e-06 Score=60.33 Aligned_cols=102 Identities=14% Similarity=0.054 Sum_probs=72.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhhhcCCCC-----C-----hhhHHHHHHHHHhcCChHHHHHHHHhc-cC-------
Q 048364 254 FTGVLTACVHTGLVDEGRKYFKMIDEEYDLEP-----R-----IQHYGCMVDLFGKAGFLEEAYEVIRTM-RL------- 315 (400)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~------- 315 (400)
+......+.+.|++++|...|++..+-..-.| + ...|..+..++.+.|++++|+..+++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 34445556666777777777766663211100 1 227888888888888888888888877 55
Q ss_pred Ccc-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchH
Q 048364 316 EPN-VIIW----GSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357 (400)
Q Consensus 316 ~p~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 357 (400)
.|+ ...| .....++...|++++|+..|++.++.. | .+...
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~-p-~d~~~ 138 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI-E-ERKGE 138 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-H-HCCSC
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC-C-CcHHH
Confidence 775 4477 888999999999999999999999987 6 44433
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.00 E-value=4.8e-05 Score=66.31 Aligned_cols=88 Identities=8% Similarity=-0.057 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHH
Q 048364 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAA 328 (400)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~ 328 (400)
...|..+..++.+.|++++|...++++.+. .+.+...+..+..+|...|++++|.+.|++. .+.| +...+..+..+
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 456777777788888888888888888732 2335667777888888888888888888877 4455 45556666666
Q ss_pred HHhcCCHHHHHH
Q 048364 329 CKEHKQFDMAER 340 (400)
Q Consensus 329 ~~~~~~~~~a~~ 340 (400)
+...++.+++.+
T Consensus 351 ~~~~~~~~~a~k 362 (370)
T 1ihg_A 351 KQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.00 E-value=4.7e-05 Score=51.02 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=58.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 048364 287 IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDL 364 (400)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 364 (400)
...+..+...+...|++++|...+++. ...| +...+..+..++...|++++|...+++..+.. | .+..++..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p-~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-P-NNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C-CCHHHHHHHHHH
Confidence 455666777777788888888877776 3334 45667777778888888888888888888877 7 667777777766
Q ss_pred hhcc
Q 048364 365 YTMN 368 (400)
Q Consensus 365 ~~~~ 368 (400)
+...
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6543
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.00 E-value=3.9e-05 Score=69.14 Aligned_cols=126 Identities=10% Similarity=-0.021 Sum_probs=96.3
Q ss_pred HHHHhCCChhhHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCChhhHHHHHHHhhhh----cC-CCCC-hhhH
Q 048364 224 CGSAHRGYSEDALSLFEMMQAT---GVKP----NEMTFTGVLTACVHTGLVDEGRKYFKMIDEE----YD-LEPR-IQHY 290 (400)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~m~~~---~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~-~~~~ 290 (400)
..+...|++++|+.++++.++. -..| ...+++.|..+|...|++++|+.++++..+- .| ..|+ ..++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3466789999999999887653 1222 2467899999999999999999999877642 12 1232 4678
Q ss_pred HHHHHHHHhcCChHHHHHHHHhc---------cCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 291 GCMVDLFGKAGFLEEAYEVIRTM---------RLEPNVI-IWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 291 ~~l~~~~~~~g~~~~a~~~~~~~---------~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
+.|...|...|++++|+.++++. .-.|+.. +.+.+..++...+.+++|+.+++++.+..
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887 2334433 56677778889999999999999998743
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.99 E-value=2.5e-05 Score=55.28 Aligned_cols=80 Identities=8% Similarity=0.075 Sum_probs=62.7
Q ss_pred hhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048364 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQA 345 (400)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 345 (400)
+.|...|+...+ ..+.+...+..+...|...|++++|...|++. ...| +...|..+..+|...|++++|...++++
T Consensus 2 ~~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 457777887774 22346677888888899999999999999887 4445 4667888888888999999999999988
Q ss_pred HHcC
Q 048364 346 LRMV 349 (400)
Q Consensus 346 ~~~~ 349 (400)
++..
T Consensus 80 l~~~ 83 (115)
T 2kat_A 80 LAAA 83 (115)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8876
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.94 E-value=4.6e-05 Score=52.42 Aligned_cols=62 Identities=11% Similarity=0.013 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048364 287 IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRM 348 (400)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (400)
...+..+..+|...|++++|...|++. ...| +...|..+..+|...|++++|...+++.++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344444455555555555555555544 2222 2334444455555555555555555554443
No 200
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.84 E-value=0.00046 Score=63.73 Aligned_cols=160 Identities=7% Similarity=-0.052 Sum_probs=124.9
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hhhHHHHHHHhhhhcCCCCChhhHHHHHHHHH
Q 048364 229 RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL----------VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFG 298 (400)
Q Consensus 229 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 298 (400)
....++|++.++++...... +...|+.--.++...++ ++++.+.++.+.+. -+-+..+|+.-.-++.
T Consensus 42 ~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 42 GELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 34457889999999886322 44556666666666666 89999999999963 3446778888888888
Q ss_pred hcC--ChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcc-----
Q 048364 299 KAG--FLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHK-QFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN----- 368 (400)
Q Consensus 299 ~~g--~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 368 (400)
+.| +++++++.++++ ...| |...|+.-..++.+.| .++++.+.++++++.. | .+..+|+....++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p-~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-F-SNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-C-CCHHHHHHHHHHHHHHSCCCC
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-C-CCccHHHHHHHHHHhhccccc
Confidence 899 779999999999 4445 7778888888888888 8999999999999999 8 8889999888887663
Q ss_pred ---------cchHHHHHHHHHHhccccccccCcccc
Q 048364 369 ---------EKWEGAERVRKLMLNQNVRKARGSSVI 395 (400)
Q Consensus 369 ---------g~~~~a~~~~~~m~~~~~~~~~~~~~~ 395 (400)
+.++++.+.+++... +.|...+.|.
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~ 230 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWF 230 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHh--hCCCCccHHH
Confidence 678889998888775 4466666664
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.83 E-value=0.00026 Score=51.92 Aligned_cols=110 Identities=9% Similarity=-0.122 Sum_probs=49.5
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHh----cCChHHH
Q 048364 231 YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGK----AGFLEEA 306 (400)
Q Consensus 231 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 306 (400)
++++|+..|++..+.| .|+.. +...|...+..++|.++|++..+. .+...+..|...|.. .+++++|
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 3455555555555544 22222 333444444455555555555431 233444444444444 4455555
Q ss_pred HHHHHhccCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 048364 307 YEVIRTMRLEPNVIIWGSFLAACKE----HKQFDMAERVIKQALRMV 349 (400)
Q Consensus 307 ~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 349 (400)
.+.|++.--.-+...+..|...|.. .+++++|..++++..+.+
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555544111233344444444444 444555555555554444
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.77 E-value=0.00013 Score=51.53 Aligned_cols=78 Identities=10% Similarity=-0.032 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHh
Q 048364 233 EDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312 (400)
Q Consensus 233 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 312 (400)
++|+..|++..+.. +.+...+..+..++...|++++|...++...+. .+.+...|..+..+|...|++++|...|++
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35667777776653 235566777777777888888888888877743 233456677777788888888888887777
Q ss_pred c
Q 048364 313 M 313 (400)
Q Consensus 313 ~ 313 (400)
.
T Consensus 79 a 79 (115)
T 2kat_A 79 G 79 (115)
T ss_dssp H
T ss_pred H
Confidence 6
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.76 E-value=0.00051 Score=50.33 Aligned_cols=113 Identities=7% Similarity=-0.097 Sum_probs=84.4
Q ss_pred CChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHHHh----cCCHHHHHH
Q 048364 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKE----HKQFDMAER 340 (400)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~ 340 (400)
+++++|.++|++..+. + .|. .. +...|...+.+++|.+.|++.-..-+...+..+...|.. .+++++|..
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4677888888888743 3 222 22 777777778888888888887223466677777777777 788888888
Q ss_pred HHHHHHHcCCCCCCchHHHHHHHHhhc----ccchHHHHHHHHHHhccccc
Q 048364 341 VIKQALRMVKPENDGGVFTLICDLYTM----NEKWEGAERVRKLMLNQNVR 387 (400)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~ 387 (400)
+|++..+.+ ++..+..|...|.. .+++++|.+.+++..+.|..
T Consensus 83 ~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 83 YYSKACGLN----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 888888876 46777888888887 78888888888888877653
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.76 E-value=3.8e-05 Score=56.97 Aligned_cols=84 Identities=14% Similarity=0.129 Sum_probs=62.2
Q ss_pred hcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCCchHHHHHHHHhh
Q 048364 299 KAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQ----------FDMAERVIKQALRMVKPENDGGVFTLICDLYT 366 (400)
Q Consensus 299 ~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 366 (400)
+.+.+++|.+.++.. ...| +...|..+..++...++ +++|+..|+++++.+ | ....+|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P-~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-P-KKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-c-CcHHHHHHHHHHHH
Confidence 344566666666665 3344 45556556666665554 569999999999999 8 88899999999998
Q ss_pred ccc-----------chHHHHHHHHHHhcc
Q 048364 367 MNE-----------KWEGAERVRKLMLNQ 384 (400)
Q Consensus 367 ~~g-----------~~~~a~~~~~~m~~~ 384 (400)
..| ++++|.+.|++..+.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 774 899999999988763
No 205
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00018 Score=50.21 Aligned_cols=66 Identities=8% Similarity=-0.072 Sum_probs=60.7
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 317 PNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 317 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
++...+..+...+...|++++|...++++++.. | .++.++..++.++...|++++|++.+++..+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-P-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 456678888999999999999999999999998 8 88999999999999999999999999998864
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.58 E-value=0.00014 Score=54.00 Aligned_cols=86 Identities=14% Similarity=0.085 Sum_probs=58.1
Q ss_pred hcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCC----------hHHHHHHHHhc-cCCc-cHHHHHHHHHHHH
Q 048364 263 HTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGF----------LEEAYEVIRTM-RLEP-NVIIWGSFLAACK 330 (400)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~ 330 (400)
+.+.+++|.+.++...+. -+.+...|..+..++...++ +++|+..|++. .+.| +...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 344556666666666532 12355566666666665554 34777777777 5566 4457777777777
Q ss_pred hc-----------CCHHHHHHHHHHHHHcCCC
Q 048364 331 EH-----------KQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 331 ~~-----------~~~~~a~~~~~~~~~~~~~ 351 (400)
.. |++++|+..|+++++.+ |
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~-P 122 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQ-P 122 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHC-T
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhC-C
Confidence 66 48999999999999999 7
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.58 E-value=0.00016 Score=49.68 Aligned_cols=62 Identities=11% Similarity=0.099 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 319 VIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
...+..+..+|...|++++|+..|+++++.. | .++.+|..++.+|...|++++|.+.+++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-P-DYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555555555555555555555555555 5 455555555555555555555555555544
No 208
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.58 E-value=0.00032 Score=47.82 Aligned_cols=80 Identities=11% Similarity=0.103 Sum_probs=59.9
Q ss_pred HHHHHHhcCChHHHHHHHHhc-cCCc-cHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhccc
Q 048364 293 MVDLFGKAGFLEEAYEVIRTM-RLEP-NVI-IWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNE 369 (400)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 369 (400)
....+.+.|++++|.+.|++. ...| +.. .+..+..+|...|++++|...|+++++.. | .+..++.. +
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p-~~~~~~~~--------~ 75 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-P-DSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T-TSTHHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C-CcHHHHHH--------H
Confidence 456778889999999999887 4445 456 78888888999999999999999999988 7 56555532 5
Q ss_pred chHHHHHHHHHHh
Q 048364 370 KWEGAERVRKLML 382 (400)
Q Consensus 370 ~~~~a~~~~~~m~ 382 (400)
.+.++...+++..
T Consensus 76 ~~~~a~~~~~~~~ 88 (99)
T 2kc7_A 76 MVMDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHh
Confidence 5566666665544
No 209
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.57 E-value=0.00035 Score=47.05 Aligned_cols=68 Identities=16% Similarity=0.172 Sum_probs=44.9
Q ss_pred ccHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcccc
Q 048364 317 PNVIIWGSFLAACKEHKQ---FDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386 (400)
Q Consensus 317 p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 386 (400)
+|...+..+..++...++ .++|..+++++++.+ | .++.+...++..+...|++++|+..|+++.+..-
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-P-YNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-c-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 345555555565544433 577777777777777 6 6777777777777777777777777777766543
No 210
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.54 E-value=0.00041 Score=46.22 Aligned_cols=65 Identities=17% Similarity=0.246 Sum_probs=59.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 318 NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
+...+..+...+...|++++|...+++.++.. | .+..++..+..++...|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-P-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45678888899999999999999999999998 8 78899999999999999999999999998764
No 211
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.47 E-value=0.068 Score=49.52 Aligned_cols=142 Identities=8% Similarity=0.044 Sum_probs=80.9
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHHHhCCHHHHHHHHhhCCC-C-ChhhHHHHHHHHHcCCC
Q 048364 19 ILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEYVVTSFGFARKLFDELPE-R-NAVTWNTMIKGYSKSGN 96 (400)
Q Consensus 19 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~-~-~~~~~~~l~~~~~~~~~ 96 (400)
|.....++ +.|++..+.++...+....+.|- ..|..+...+.....++....+++-+. | ....-+.-+..+.+.++
T Consensus 10 ~~~a~~a~-~~~~~~~~~~l~~~l~~~pL~~y-l~y~~l~~~l~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~ 87 (618)
T 1qsa_A 10 YAQIKQAW-DNRQMDVVEQMMPGLKDYPLYPY-LEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARRED 87 (618)
T ss_dssp HHHHHHHH-HTTCHHHHHHHSGGGTTSTTHHH-HHHHHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHH-HCCCHHHHHHHHHhhcCCCcHHH-HHHHHHHhCcccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCC
Confidence 44444443 35667666666544422212111 133333222223356667777666653 2 22334555677788999
Q ss_pred hHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchh
Q 048364 97 VCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVG 165 (400)
Q Consensus 97 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~ 165 (400)
+...+.++.. ...+...-.....+....|+.++|......+-......| ..+..++..+.+.|...
T Consensus 88 w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p--~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 88 WRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQP--NACDKLFSVWRASGKQD 153 (618)
T ss_dssp HHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCC--THHHHHHHHHHHTTCSC
T ss_pred HHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHCCCCC
Confidence 9999997777 434555555577778888998888888877762322333 45566666666555443
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.39 E-value=0.00024 Score=62.97 Aligned_cols=84 Identities=12% Similarity=0.065 Sum_probs=56.9
Q ss_pred cCChHHHHHHHHhc---------cCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----C--CCCchHHHHHHH
Q 048364 300 AGFLEEAYEVIRTM---------RLEPNV-IIWGSFLAACKEHKQFDMAERVIKQALRMVK----P--ENDGGVFTLICD 363 (400)
Q Consensus 300 ~g~~~~a~~~~~~~---------~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~--~~~~~~~~~l~~ 363 (400)
.|++++|+.++++. ...|+. .+++.+..+|..+|++++|+.+++++++... + +....+++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777776654 223333 4678888888888888888888887775311 2 023446777788
Q ss_pred HhhcccchHHHHHHHHHHhc
Q 048364 364 LYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 364 ~~~~~g~~~~a~~~~~~m~~ 383 (400)
.|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 88888888888888877764
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.39 E-value=0.001 Score=59.01 Aligned_cols=85 Identities=14% Similarity=0.063 Sum_probs=67.8
Q ss_pred hcCChhhHHHHHHHhhhhc--CCCC----ChhhHHHHHHHHHhcCChHHHHHHHHhc---------cCCccH-HHHHHHH
Q 048364 263 HTGLVDEGRKYFKMIDEEY--DLEP----RIQHYGCMVDLFGKAGFLEEAYEVIRTM---------RLEPNV-IIWGSFL 326 (400)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~---------~~~p~~-~~~~~l~ 326 (400)
..|++++|+.++++..+.. -+.| ...+++.|..+|...|++++|+.++++. ...|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3578899999988776421 1222 2467899999999999999999999887 345554 4799999
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 048364 327 AACKEHKQFDMAERVIKQALR 347 (400)
Q Consensus 327 ~~~~~~~~~~~a~~~~~~~~~ 347 (400)
..|..+|++++|+.+++++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999999886
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.31 E-value=0.0028 Score=56.15 Aligned_cols=100 Identities=13% Similarity=0.021 Sum_probs=74.2
Q ss_pred HHHHHhcCChhhHHHHHHHhhhhc--CCCC----ChhhHHHHHHHHHhcCChHHHHHHHHhc---------cCCccH-HH
Q 048364 258 LTACVHTGLVDEGRKYFKMIDEEY--DLEP----RIQHYGCMVDLFGKAGFLEEAYEVIRTM---------RLEPNV-II 321 (400)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~---------~~~p~~-~~ 321 (400)
+..+.+.|++++|+.++++..+.. -+.| ...+++.+...|...|++++|+.++++. ...|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667789999999998877421 1222 2456888999999999999999988876 344544 47
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCCchHHH
Q 048364 322 WGSFLAACKEHKQFDMAERVIKQALR-----MVKPENDGGVFT 359 (400)
Q Consensus 322 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 359 (400)
++.|...|..+|++++|+.+++++.+ .| | .++.+-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG-~-~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG-R-EHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-T-TSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC-C-CChHHHH
Confidence 89999999999999999999998876 34 5 5554443
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.27 E-value=0.00053 Score=60.84 Aligned_cols=90 Identities=10% Similarity=0.118 Sum_probs=71.2
Q ss_pred HHHHHhcCChHHHHHHHHhc---------cCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCCC---chH
Q 048364 294 VDLFGKAGFLEEAYEVIRTM---------RLEPN-VIIWGSFLAACKEHKQFDMAERVIKQALRMVK---PEND---GGV 357 (400)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~---~~~ 357 (400)
+..+.+.|++++|+..+++. ...|+ ..+++.+..+|...|++++|+.++++++.... ++.+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 55566889999999999876 12232 45789999999999999999999998886321 1133 456
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHhc
Q 048364 358 FTLICDLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 358 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 383 (400)
++.|+..|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999998875
No 216
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.27 E-value=0.015 Score=41.04 Aligned_cols=141 Identities=10% Similarity=0.031 Sum_probs=99.9
Q ss_pred HHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHH
Q 048364 226 SAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE 305 (400)
Q Consensus 226 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 305 (400)
+.-.|..++..++..+.... .+..-||.+|--....-+-+-..++++.+-+-+.+. .+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHH
Confidence 44567778888887777664 255667777766666666666677777665432222 3444444
Q ss_pred HHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhccc
Q 048364 306 AYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQN 385 (400)
Q Consensus 306 a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 385 (400)
....+-.++ .+...++..+.....+|+-+.-.+++..+.... + +++.....+..+|.+-|+..+|.+++.+.-+.|
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~-~-~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-E-VSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-C-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccC-C-CChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 444444443 244556677888899999999999999876655 5 789999999999999999999999999999988
Q ss_pred cc
Q 048364 386 VR 387 (400)
Q Consensus 386 ~~ 387 (400)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 75
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.24 E-value=0.02 Score=48.85 Aligned_cols=143 Identities=14% Similarity=0.034 Sum_probs=86.4
Q ss_pred CCcccHHHHHHHHH--hCC---ChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh---cC-C----hhhHHHHHHHhhh
Q 048364 214 RNVISWTALICGSA--HRG---YSEDALSLFEMMQATGVKPN-EMTFTGVLTACVH---TG-L----VDEGRKYFKMIDE 279 (400)
Q Consensus 214 ~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~---~~-~----~~~a~~~~~~~~~ 279 (400)
.+...|...+.+.. ..+ +..+|..+|++..+. .|+ ...+..+..++.. .+ . .......++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 46777877776543 333 347889999998886 454 3444443333321 11 0 1111111111111
Q ss_pred hcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHH
Q 048364 280 EYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVF 358 (400)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 358 (400)
....+.+..+|..+...+...|++++|...++++ .+.|+...|..+...+.-.|++++|.+.++++...+ | ...+|
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~-P--~~~t~ 346 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR-P--GANTL 346 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C--SHHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C--CcChH
Confidence 1122456667777766677778888888888887 555777777777777888888888888888888887 5 44455
Q ss_pred HHH
Q 048364 359 TLI 361 (400)
Q Consensus 359 ~~l 361 (400)
...
T Consensus 347 ~~~ 349 (372)
T 3ly7_A 347 YWI 349 (372)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.13 E-value=0.0013 Score=44.62 Aligned_cols=58 Identities=12% Similarity=0.205 Sum_probs=52.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCch-HHHHHHHHhhcccchHHHHHHHHHHhcc
Q 048364 325 FLAACKEHKQFDMAERVIKQALRMVKPENDGG-VFTLICDLYTMNEKWEGAERVRKLMLNQ 384 (400)
Q Consensus 325 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 384 (400)
....+...|++++|...++++++.. | .+.. .+..++.+|...|++++|.+.+++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-P-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-S-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-C-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4567889999999999999999998 8 7788 9999999999999999999999998864
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.08 E-value=0.0059 Score=59.24 Aligned_cols=130 Identities=14% Similarity=0.038 Sum_probs=80.1
Q ss_pred HHHHhcCCHHHHHH-HHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 048364 193 DMYAKCGFLKYALM-VFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGR 271 (400)
Q Consensus 193 ~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 271 (400)
......+++++|.+ ++..+. +......++..+.+.|.+++|+++.+. |. . -.......|+++.|.
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-~----~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-------QD-Q----KFELALKVGQLTLAR 672 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-H----HHHHHHHHTCHHHHH
T ss_pred hHHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-------cc-h----heehhhhcCCHHHHH
Confidence 33446788888877 554433 011226667777888888888766531 11 1 122345678888888
Q ss_pred HHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 272 KYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
++.+.+ .+...|..+.+.+.+.|+++.|.+.|.+++- |..+...+...|+.+...++.+.....+
T Consensus 673 ~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 673 DLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 776444 3557888888888888888888888888741 2233444444555555555555444444
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.01 E-value=0.0055 Score=52.31 Aligned_cols=134 Identities=13% Similarity=0.072 Sum_probs=93.1
Q ss_pred CCCCHHHHHHHHHHHH--hcC---ChhhHHHHHHHhhhhcCCCCC-hhhHHHHHHHHHh---cC-C-------hHHHHHH
Q 048364 247 VKPNEMTFTGVLTACV--HTG---LVDEGRKYFKMIDEEYDLEPR-IQHYGCMVDLFGK---AG-F-------LEEAYEV 309 (400)
Q Consensus 247 ~~p~~~~~~~l~~~~~--~~~---~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g-~-------~~~a~~~ 309 (400)
.+.+...|...+++.. ..+ ...+|..+|+++.+. .|+ ...|..+..+|.. .+ . ...+.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3556677777776643 333 357899999999853 554 3445544444431 11 1 1122222
Q ss_pred HHhc-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcccc
Q 048364 310 IRTM-RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386 (400)
Q Consensus 310 ~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 386 (400)
...+ ....+..+|..+...+...|++++|...+++++..+ | +...|..+...+.-.|++++|.+.+++....+-
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-~--s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-M--SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-C--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 2222 234577788888888888899999999999999998 5 678888999999999999999999998877543
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.89 E-value=0.0079 Score=49.23 Aligned_cols=82 Identities=12% Similarity=0.163 Sum_probs=44.1
Q ss_pred HHHHHHHhc-cCCcc---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcc-cchHHH
Q 048364 305 EAYEVIRTM-RLEPN---VIIWGSFLAACKEH-----KQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN-EKWEGA 374 (400)
Q Consensus 305 ~a~~~~~~~-~~~p~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a 374 (400)
.|...+++. .+.|+ ...|..+...|... |+.++|.++|++.++.+ |..+..++......++.. |+.+++
T Consensus 181 ~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln-P~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 181 AAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC-SAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC-CTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC-CCCCchHHHHHHHHHHHhcCCHHHH
Confidence 344444444 44443 33455555555552 56666666666666666 522355666666665553 666666
Q ss_pred HHHHHHHhccccc
Q 048364 375 ERVRKLMLNQNVR 387 (400)
Q Consensus 375 ~~~~~~m~~~~~~ 387 (400)
.+.+++......+
T Consensus 260 ~~~L~kAL~a~p~ 272 (301)
T 3u64_A 260 DEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHCCGG
T ss_pred HHHHHHHHcCCCC
Confidence 6666666554444
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.88 E-value=0.012 Score=40.34 Aligned_cols=73 Identities=11% Similarity=-0.022 Sum_probs=48.0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhc-c--------CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchH
Q 048364 287 IQHYGCMVDLFGKAGFLEEAYEVIRTM-R--------LEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGV 357 (400)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~-~--------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 357 (400)
..-+..+...+.+.|++..|...|+.. . -.+....+..+..++.+.|+++.|..+++++.+.. | .+..+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~-P-~~~~~ 82 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-P-EHQRA 82 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-TCHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-C-CCHHH
Confidence 334445666666666666666666655 0 12345677778888888888888888888888887 7 55554
Q ss_pred HHHH
Q 048364 358 FTLI 361 (400)
Q Consensus 358 ~~~l 361 (400)
...+
T Consensus 83 ~~n~ 86 (104)
T 2v5f_A 83 NGNL 86 (104)
T ss_dssp HHHH
T ss_pred HhhH
Confidence 4333
No 223
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.83 E-value=0.00071 Score=59.21 Aligned_cols=208 Identities=11% Similarity=0.084 Sum_probs=119.8
Q ss_pred CchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHc
Q 048364 15 DSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSK 93 (400)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 93 (400)
|+..|..++.++.+.|.++.-..++....+.. .++.+=+.|+-+| +.++..+-.+.+ ..||..-...+.+-|..
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~ 156 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYD 156 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHH
Confidence 45556666666666666666666665554432 2334445566666 665544322221 13555555666666666
Q ss_pred CCChHHHHHHHhhCC------------------------CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHH
Q 048364 94 SGNVCEARDFFERMP------------------------LRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQM 149 (400)
Q Consensus 94 ~~~~~~a~~~~~~~~------------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 149 (400)
.|.++.|.-+|..+. ..++.+|--+-.+|...+++.-|.-.--.++ - .||
T Consensus 157 e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniI-v---had-- 230 (624)
T 3lvg_A 157 EKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV-V---HAD-- 230 (624)
T ss_dssp SCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH-C---CSS--
T ss_pred ccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhc-c---cHH--
Confidence 666666666665553 2255677777777777777766655444443 1 121
Q ss_pred HHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC-----------CCccc
Q 048364 150 TIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE-----------RNVIS 218 (400)
Q Consensus 150 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~ 218 (400)
....++.-|-..|.+++ ...+++.-... -.....+|+.|.-.|++- +.++..+.++..-+ .....
T Consensus 231 eL~elv~~YE~~G~f~E--LIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahL 306 (624)
T 3lvg_A 231 ELEELINYYQDRGYFEE--LITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHL 306 (624)
T ss_dssp CCSGGGSSSSTTCCCTT--STTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTC
T ss_pred HHHHHHHHHHhCCCHHH--HHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 22345566677777776 55555554421 134567788888777764 45555555544332 24566
Q ss_pred HHHHHHHHHhCCChhhHHH
Q 048364 219 WTALICGSAHRGYSEDALS 237 (400)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~ 237 (400)
|.-++-.|.+-.++|.|..
T Consensus 307 W~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 307 WAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHhcchhHHHHHH
Confidence 7778888887777776654
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.78 E-value=0.034 Score=53.82 Aligned_cols=26 Identities=19% Similarity=-0.041 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhc
Q 048364 186 QIATILVDMYAKCGFLKYALMVFELM 211 (400)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 211 (400)
..|..+...+.+.|+++.|.+.|..+
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34555555555555555555554443
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.71 E-value=0.014 Score=39.03 Aligned_cols=67 Identities=12% Similarity=-0.025 Sum_probs=48.0
Q ss_pred CCChhhHHHHHHHHHhcCC---hHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 284 EPRIQHYGCMVDLFGKAGF---LEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 284 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
+.++..+..+..++...++ .++|..++++. ...| +......+...+.+.|++++|+..|+++.+.. |
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~-p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN-D 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC-C
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C
Confidence 3456666777777654444 67888888877 4455 45566777778888888888888888888877 6
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.15 Score=38.31 Aligned_cols=128 Identities=18% Similarity=0.172 Sum_probs=78.1
Q ss_pred HHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 048364 194 MYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKY 273 (400)
Q Consensus 194 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 273 (400)
.....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|.-.|+.+...++
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345678888888777665 3566788888888888888888887776532 33344445556776665555
Q ss_pred HHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048364 274 FKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQA 345 (400)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 345 (400)
-+....+ | -++....++.-.|+++++.++|.+.+.-|....+ ....|-.+.|.++.+++
T Consensus 83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~------A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAV------AKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHH------HHHTTCHHHHHHHHHHT
T ss_pred HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHH------HHHcCcHHHHHHHHHHh
Confidence 4444422 1 2455556667778888888888777544433221 12245556666666554
No 227
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.47 E-value=0.00017 Score=62.98 Aligned_cols=237 Identities=10% Similarity=0.118 Sum_probs=144.9
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhc
Q 048364 81 AVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSH 160 (400)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 160 (400)
+..|..+..+....+++.+|++.|-+ ..|+..|..++.+..+.|.+++-+.++...+ +..-.| ..=+.++-+|++
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaR-k~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMAR-KKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTS-TTCCST--TTTHHHHHHHHT
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHhccc--ccHHHHHHHHHh
Confidence 34567777777777777777666643 3355666677777777777777777765554 332223 333466777777
Q ss_pred ccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC------------------------CCc
Q 048364 161 LGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE------------------------RNV 216 (400)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------~~~ 216 (400)
.++..+ -++++. .|+..-...+.+-+...|.++.|.-+|..+.. .++
T Consensus 129 ~~rL~e--lEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 129 TNRLAE--LEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp SCSSST--TTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred hCcHHH--HHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 777665 333332 24444445566666666777666666655441 367
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHH
Q 048364 217 ISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDL 296 (400)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 296 (400)
.+|..+-.+|...+.+.-|.-.--.+.- .|+ ....++..|...|-+++.+.+++.... --.....+|+-|.-.
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglg--lErAHmGmFTELaIL 272 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAIL 272 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTT--STTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhC--CCchhHHHHHHHHHH
Confidence 7888888888888887766544333332 111 123355667778888888888877662 223466778888777
Q ss_pred HHhcCChHHHHHHHHhc----cCCc------cHHHHHHHHHHHHhcCCHHHHH
Q 048364 297 FGKAGFLEEAYEVIRTM----RLEP------NVIIWGSFLAACKEHKQFDMAE 339 (400)
Q Consensus 297 ~~~~g~~~~a~~~~~~~----~~~p------~~~~~~~l~~~~~~~~~~~~a~ 339 (400)
|++- ++++..+.++-. +++. ....|..++-.|.+-.+++.|.
T Consensus 273 YsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 273 YSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 7765 455555555444 2221 2345777777777777777664
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.43 E-value=0.034 Score=40.72 Aligned_cols=84 Identities=7% Similarity=-0.022 Sum_probs=50.1
Q ss_pred hHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcC---ChHHHHHHHHhc-cCC-c--cHHHHHHHHHHHHhcCCHHHHHHH
Q 048364 269 EGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG---FLEEAYEVIRTM-RLE-P--NVIIWGSFLAACKEHKQFDMAERV 341 (400)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~a~~~ 341 (400)
.+.+-|....+. + .++..+...+.-++++.+ +.+++..+|++. ... | +...+-.+.-+|.+.|++++|.+.
T Consensus 16 ~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 344444444422 2 255566666666666666 455677777766 223 4 234445556667777888888888
Q ss_pred HHHHHHcCCCCCCch
Q 048364 342 IKQALRMVKPENDGG 356 (400)
Q Consensus 342 ~~~~~~~~~~~~~~~ 356 (400)
++.+++.. | .+..
T Consensus 94 ~~~lL~ie-P-~n~Q 106 (152)
T 1pc2_A 94 VRGLLQTE-P-QNNQ 106 (152)
T ss_dssp HHHHHHHC-T-TCHH
T ss_pred HHHHHhcC-C-CCHH
Confidence 88888777 6 4433
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.30 E-value=0.018 Score=39.51 Aligned_cols=70 Identities=9% Similarity=0.067 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcC-----CCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccH
Q 048364 250 NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYD-----LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNV 319 (400)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~ 319 (400)
+...+..+...+.+.++++.|...|+.+.+... -.+....+..+..+|.+.|++++|...+++. .+.|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 444455566666677777777777766654321 1223456677777777777777777777776 455543
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.14 Score=38.52 Aligned_cols=130 Identities=9% Similarity=0.061 Sum_probs=91.2
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCCh
Q 048364 224 CGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFL 303 (400)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 303 (400)
....+.|+++.|.++.+++ -+...|..|.......|+++-|+..|..... +..+.-.|...|+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCH
Confidence 3456789999999987765 3788999999999999999999999988862 45566777888888
Q ss_pred HHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 304 EEAYEVIRTMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 304 ~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
++..++-+....+- -++.....+...|+++++.+++.+. + . -+.++ . .....|-.+.|.++.+.+-
T Consensus 77 e~L~kla~iA~~~g---~~n~af~~~l~lGdv~~~i~lL~~~---~-r--~~eA~-~---~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE---DFGSMLLNTFYNNSTKERSSIFAEG---G-S--LPLAY-A---VAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHTCHHHHHHHHHHT---T-C--HHHHH-H---HHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCc---cHHHHHHHHHHcCCHHHHHHHHHHC---C-C--hHHHH-H---HHHHcCcHHHHHHHHHHhC
Confidence 77666555441111 2455566777899999999998544 3 1 11111 1 2223566788888887763
No 231
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.97 E-value=0.043 Score=40.21 Aligned_cols=85 Identities=13% Similarity=0.014 Sum_probs=63.2
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhhHHHHHHHhhhhcCCCC--ChhhHHHHHHHHHhcCChHHH
Q 048364 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG---LVDEGRKYFKMIDEEYDLEP--RIQHYGCMVDLFGKAGFLEEA 306 (400)
Q Consensus 232 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 306 (400)
...+.+.|.+....|. ++..+...+..++++.+ +.++++.+++.+.+. . .| ....+-.+.-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3456666766666554 67777777888888887 666899999988864 2 24 355666678888999999999
Q ss_pred HHHHHhc-cCCccH
Q 048364 307 YEVIRTM-RLEPNV 319 (400)
Q Consensus 307 ~~~~~~~-~~~p~~ 319 (400)
.+.++.+ .+.|+.
T Consensus 91 ~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 91 LKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCCCC
Confidence 9999988 777743
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.49 E-value=0.06 Score=44.13 Aligned_cols=104 Identities=14% Similarity=0.120 Sum_probs=69.8
Q ss_pred hhhHHHHHHHhhhhcCCCCC---hhhHHHHHHHHHhc-----CChHHHHHHHHhc-cCCcc--HHHHHHHHHHHHhc-CC
Q 048364 267 VDEGRKYFKMIDEEYDLEPR---IQHYGCMVDLFGKA-----GFLEEAYEVIRTM-RLEPN--VIIWGSFLAACKEH-KQ 334 (400)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~~-~~~p~--~~~~~~l~~~~~~~-~~ 334 (400)
...|...+++.. .+.|+ ...|..+...|.+. |+.++|.+.|++. .+.|+ ..++......++.. |+
T Consensus 179 l~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 345566666666 33555 45788888888884 8999999999888 66663 56666677777774 88
Q ss_pred HHHHHHHHHHHHHcCCCC--CCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 335 FDMAERVIKQALRMVKPE--NDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 335 ~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
.+++.+.+++++... |. |+....+ .+.-.+|..+++++.
T Consensus 256 ~~~a~~~L~kAL~a~-p~~~P~~~lan--------~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 256 RAGFDEALDRALAID-PESVPHNKLLV--------ILSQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHHCC-GGGCSSCHHHH--------HHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHcCC-CCCCCChhHHH--------HHHHHHHHHHHHHhH
Confidence 999999999998887 64 3332222 223455666665544
No 233
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.36 E-value=1.8 Score=42.02 Aligned_cols=253 Identities=13% Similarity=-0.003 Sum_probs=125.2
Q ss_pred HHcCCChHHHHHHHhhCCC----CChh--hHHHHHHHHHhcCCcchHHHHHHHHHhcCC-CC-----CCHHHHHHHHHHh
Q 048364 91 YSKSGNVCEARDFFERMPL----RNVA--SWSAMIAAYLNAGAYDPGLKLFREMISNEG-LT-----PDQMTIGAVLSGC 158 (400)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~----~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~-----p~~~~~~~ll~~~ 158 (400)
....|+.++++.+++.... .+.. .-..+.-+....|..+++..++........ +. +....-.++--+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4456777777777776553 1211 222233345556665677777766552221 00 1111111222222
Q ss_pred hcccchhhhhhhhhhhHHHh-ccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCC-CcccHH--HHHHHHHhCCChhh
Q 048364 159 SHLGSVGLLMGKSAHGFIVK-NEWELNEQIATILVDMYAKCGFLKYALMVFELMEER-NVISWT--ALICGSAHRGYSED 234 (400)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~--~l~~~~~~~~~~~~ 234 (400)
+-.|.-++. +...+..+.. .........--+|...+...|+-+....++..+.+. +..... .+.-++...|+.+.
T Consensus 464 a~~GS~~ee-v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 464 AAMGSANIE-VYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HSTTCCCHH-HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HhcCCCCHH-HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 222222111 2222222222 211111122223444556677777777776655432 222222 23334456788888
Q ss_pred HHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHh
Q 048364 235 ALSLFEMMQATGVKPNEMTF--TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312 (400)
Q Consensus 235 a~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 312 (400)
+..+.+.+... ..|....- .++.-+|+..|+.....++++.+.. ....++.-...+.-++...|+.+.+.++++.
T Consensus 543 ~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 543 ADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 88888877764 12222211 2334456778888777778888874 2233333333344455556777667777765
Q ss_pred c--cCCccHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 048364 313 M--RLEPNVIIWGSFLAACKEHKQF-DMAERVIKQALR 347 (400)
Q Consensus 313 ~--~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~ 347 (400)
+ ...|.+..-..+.-+....|.. .++...+..+..
T Consensus 620 L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 620 LSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 5 2345554444444455555543 567777777754
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.15 E-value=0.24 Score=46.88 Aligned_cols=55 Identities=11% Similarity=0.032 Sum_probs=50.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 326 LAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 326 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
.+.|...|+++.|+.+.++..... | .+-.+|..|+.+|...|+|+.|+-.++.++
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a-P-seF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA-L-DSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-S-SCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC-c-hhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 345667899999999999999998 8 899999999999999999999999999986
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.99 E-value=0.26 Score=35.77 Aligned_cols=99 Identities=9% Similarity=0.067 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHhcCCh------hhHHHHHHHhhhhcCCCCChh-hHHHHHHH------HHhcCChHHHHHHHHhc-cC
Q 048364 250 NEMTFTGVLTACVHTGLV------DEGRKYFKMIDEEYDLEPRIQ-HYGCMVDL------FGKAGFLEEAYEVIRTM-RL 315 (400)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~a~~~~~~~-~~ 315 (400)
|..+|-..+....+.|+. ++...+|++... .++|+.. .|...|.. +...++.++|.++|+.+ .+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 567777777777777888 788888888875 5566431 22222221 23457888888888877 11
Q ss_pred -CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 316 -EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 316 -~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
+-=...|......-.++|+...|.+++.+.+..+ |
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~-~ 125 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG-A 125 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-C
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-C
Confidence 1115566666666678888888888888888887 6
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.95 E-value=0.58 Score=32.92 Aligned_cols=87 Identities=7% Similarity=-0.010 Sum_probs=50.2
Q ss_pred hhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHH---HHHHHHhc-cCC-c--cHHHHHHHHHHHHhcCCHHHHH
Q 048364 267 VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEE---AYEVIRTM-RLE-P--NVIIWGSFLAACKEHKQFDMAE 339 (400)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~a~ 339 (400)
...+.+-|...... +. ++..+-..+.-++.+..+... ++.+++++ ... | .....-.+.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 33444445444422 22 555555556666666665554 66666666 222 4 2233444566777888888888
Q ss_pred HHHHHHHHcCCCCCCchH
Q 048364 340 RVIKQALRMVKPENDGGV 357 (400)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~ 357 (400)
+.++.+++.. | .+..+
T Consensus 95 ~~~~~lL~~e-P-~n~QA 110 (126)
T 1nzn_A 95 KYVRGLLQTE-P-QNNQA 110 (126)
T ss_dssp HHHHHHHHHC-T-TCHHH
T ss_pred HHHHHHHHhC-C-CCHHH
Confidence 8888888877 6 44443
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.70 E-value=0.76 Score=33.35 Aligned_cols=111 Identities=11% Similarity=0.159 Sum_probs=74.0
Q ss_pred CCcccHHHHHHHHHhCCCh------hhHHHHHHHHHHCCCCCCHHH----HHHH-HH--HHHhcCChhhHHHHHHHhhhh
Q 048364 214 RNVISWTALICGSAHRGYS------EDALSLFEMMQATGVKPNEMT----FTGV-LT--ACVHTGLVDEGRKYFKMIDEE 280 (400)
Q Consensus 214 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~m~~~~~~p~~~~----~~~l-~~--~~~~~~~~~~a~~~~~~~~~~ 280 (400)
.|..+|-..+...-+.|++ +...++|++.... ++|+... |.-+ +. .+...++.++|.++|+.+.+-
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4677888888888888988 8888888888775 6665321 1111 00 123458899999999988753
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHH
Q 048364 281 YDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLA 327 (400)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~ 327 (400)
+-.- ...|....+.-.++|++.+|.+++.+. |..| +...+...++
T Consensus 90 -hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 90 -CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp -CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred -hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 2222 666766777777899999999999887 5445 3334444443
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.66 E-value=0.78 Score=32.61 Aligned_cols=137 Identities=9% Similarity=0.050 Sum_probs=96.7
Q ss_pred HHhcCCHHHHHHHHHhccCC-CcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 048364 195 YAKCGFLKYALMVFELMEER-NVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKY 273 (400)
Q Consensus 195 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 273 (400)
..-.|..++..++..+..++ +..-||-+|.-....-+-+-..++++..-. -.|. ...|+.......
T Consensus 17 ~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSVVEC 83 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHHHHHH
Confidence 44578899999998887764 445566666655566666655665555432 2222 234555555554
Q ss_pred HHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048364 274 FKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVK 350 (400)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 350 (400)
+-.+- .+.......+..+..+|+-++-.+++.++ +..|+....-.+..+|.+.|+..++.+++.++.+.|.
T Consensus 84 ~~~~n------~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVINN------TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHTT------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhc------chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 44332 24445666778888999999999999994 6677888888999999999999999999999999984
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.49 E-value=0.11 Score=36.54 Aligned_cols=84 Identities=15% Similarity=0.048 Sum_probs=57.5
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh---HHHHHHHhhhhcCCCC--ChhhHHHHHHHHHhcCChHHH
Q 048364 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDE---GRKYFKMIDEEYDLEP--RIQHYGCMVDLFGKAGFLEEA 306 (400)
Q Consensus 232 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 306 (400)
...+.+.|.+....|. |+..+-..+..++.+..+... ++.+++.+.+. + .| .....-.|.-++.+.|++++|
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 4455556665555443 677777777778888776665 78888888753 2 23 334455577788899999999
Q ss_pred HHHHHhc-cCCcc
Q 048364 307 YEVIRTM-RLEPN 318 (400)
Q Consensus 307 ~~~~~~~-~~~p~ 318 (400)
.+.++.+ .+.|+
T Consensus 94 ~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 94 LKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCCC
Confidence 9999888 66663
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.37 E-value=0.1 Score=45.59 Aligned_cols=54 Identities=9% Similarity=0.025 Sum_probs=26.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHH
Q 048364 326 LAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLM 381 (400)
Q Consensus 326 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 381 (400)
+..+...|+++++...++.+.... | .+...+..++.++.+.|+..+|.+.|+++
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~~-P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFEH-P-YREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-T-TCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444455555555555554444 4 44445555555555555555555444443
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.98 E-value=1.4 Score=39.06 Aligned_cols=160 Identities=9% Similarity=0.052 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccC----CC-----cccHHHHHHHHHhCCChhhHHHHHHHHHH----CCCCCCH-
Q 048364 186 QIATILVDMYAKCGFLKYALMVFELMEE----RN-----VISWTALICGSAHRGYSEDALSLFEMMQA----TGVKPNE- 251 (400)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~p~~- 251 (400)
.....|...|...|++.+|.+++..+.. .+ +..+..-+..|...+++..|..++.++.. ....|+.
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 3445688889999999999999988763 11 23566677888899999999999888642 2222322
Q ss_pred -HHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHH----HHHHHHhcCChHHHHHHHHhc---cCCccHHHHH
Q 048364 252 -MTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC----MVDLFGKAGFLEEAYEVIRTM---RLEPNVIIWG 323 (400)
Q Consensus 252 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~a~~~~~~~---~~~p~~~~~~ 323 (400)
..+...+..+...+++.+|.+.|..+........+...+.. ++.+..-.+....-..++... ..-++...|.
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~ 297 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQE 297 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHH
Confidence 34566777778889999998888877654333333322222 122222222111112222222 2235677788
Q ss_pred HHHHHHHhc--CCHHHHHHHHHHH
Q 048364 324 SFLAACKEH--KQFDMAERVIKQA 345 (400)
Q Consensus 324 ~l~~~~~~~--~~~~~a~~~~~~~ 345 (400)
.++.+|... .+++.+...+...
T Consensus 298 ~L~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 298 SLVKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HHHHHHHHCCSSSHHHHHHHTCSS
T ss_pred HHHHHHHhchHhhhHHHHHHHHHH
Confidence 888888653 3455555554443
No 242
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.77 E-value=0.57 Score=34.67 Aligned_cols=60 Identities=10% Similarity=0.026 Sum_probs=29.3
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHC-CCCCCH-------HHHHHHHHHHHhcCChhhHHHHHHHhh
Q 048364 219 WTALICGSAHRGYSEDALSLFEMMQAT-GVKPNE-------MTFTGVLTACVHTGLVDEGRKYFKMID 278 (400)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (400)
+..-+..+...|.++.|+-+.+.+... +..|+. .++..+.+++...+++..|...|++..
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 333445555566666665555544332 112221 133444555555666666666665543
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.54 E-value=1 Score=29.96 Aligned_cols=63 Identities=8% Similarity=0.148 Sum_probs=49.8
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHH
Q 048364 231 YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295 (400)
Q Consensus 231 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (400)
+.-++.+-++.+....+.|++....+.+++|.+.+++..|.++++-++.+.+.. ..+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 445666777777778889999999999999999999999999999998765433 456776654
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.20 E-value=6.7 Score=38.21 Aligned_cols=301 Identities=8% Similarity=-0.004 Sum_probs=160.2
Q ss_pred HhCCHHHHHHHHhhCCCC----Chhh--HHHHHHHHHcCCChHHHHHHHhhCC-CCC----------hhhHHHHHHHHHh
Q 048364 62 VVTSFGFARKLFDELPER----NAVT--WNTMIKGYSKSGNVCEARDFFERMP-LRN----------VASWSAMIAAYLN 124 (400)
Q Consensus 62 ~~g~~~~a~~~~~~~~~~----~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~-~~~----------~~~~~~l~~~~~~ 124 (400)
..|+.++++.+++..... +..+ =..+.-+.+..|..+++..++.... .++ ...-.++.-+.+-
T Consensus 386 h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~ 465 (963)
T 4ady_A 386 HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA 465 (963)
T ss_dssp TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh
Confidence 788888999999887652 2222 2223344566676667777766543 222 1112233333333
Q ss_pred cCC-cchHHHHHHHHHhcCCCCCCHHHHHHH--HHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCH
Q 048364 125 AGA-YDPGLKLFREMISNEGLTPDQMTIGAV--LSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFL 201 (400)
Q Consensus 125 ~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~l--l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 201 (400)
.|. -+++.+.+..+..... +.......+ -..+.-.|+.+. ...++..+.+.. .-+..-...+.-++...|+.
T Consensus 466 ~GS~~eev~e~L~~~L~dd~--~~~~~~AalALGli~vGTgn~~a--i~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 466 MGSANIEVYEALKEVLYNDS--ATSGEAAALGMGLCMLGTGKPEA--IHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp TTCCCHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHTTCCCHHH--HHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred cCCCCHHHHHHHHHHHhcCC--HHHHHHHHHHHhhhhcccCCHHH--HHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence 443 3466777777662221 111112222 223445555555 666666665432 22233333444445567888
Q ss_pred HHHHHHHHhccC-CCccc-HH---HHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 048364 202 KYALMVFELMEE-RNVIS-WT---ALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKM 276 (400)
Q Consensus 202 ~~A~~~~~~~~~-~~~~~-~~---~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 276 (400)
+.+..+.+.+.. .++.. |. ++..+|+..|+......+++.+.... ..+......+.-++...|+.+.+.++++.
T Consensus 541 e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 541 ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 888888777764 33332 33 34456788899887777998887652 22333333333344556787888888887
Q ss_pred hhhhcCCCCChhhHHHHHHHHHhcCCh-HHHHHHHHhccCCccHHHHHHHHHHHHh--cC-------CHHHHHHHHHHHH
Q 048364 277 IDEEYDLEPRIQHYGCMVDLFGKAGFL-EEAYEVIRTMRLEPNVIIWGSFLAACKE--HK-------QFDMAERVIKQAL 346 (400)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~p~~~~~~~l~~~~~~--~~-------~~~~a~~~~~~~~ 346 (400)
+.+ ...|.+..-..+.-+....|.. .++.+++..+--.+|..+-...+.++.. .| ++....+.+....
T Consensus 620 L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~ 697 (963)
T 4ady_A 620 LSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVI 697 (963)
T ss_dssp GGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHH
T ss_pred HHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHH
Confidence 764 2345554444455555555554 6788888888435555544444444432 22 3333444444444
Q ss_pred HcCCCCCCchHHHHHHHHhhcccc
Q 048364 347 RMVKPENDGGVFTLICDLYTMNEK 370 (400)
Q Consensus 347 ~~~~~~~~~~~~~~l~~~~~~~g~ 370 (400)
......++...-..+..+....|.
T Consensus 698 ~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 698 TNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred hcccccHHHHHHHHHHHHHHhcCC
Confidence 322121234444555555555553
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.20 E-value=1.9 Score=43.61 Aligned_cols=189 Identities=7% Similarity=0.050 Sum_probs=99.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCC----------------------
Q 048364 191 LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK---------------------- 248 (400)
Q Consensus 191 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~---------------------- 248 (400)
++..+...+..+.+.++..-... ++...-.+..++...|++++|...|++... |+.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~~ 895 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQ 895 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred HHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccccccc
Confidence 44445555666655554444332 333334455666777777777777755311 110
Q ss_pred -CCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccHHHHH
Q 048364 249 -PNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPR---IQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNVIIWG 323 (400)
Q Consensus 249 -p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~ 323 (400)
.-..-|..++..+.+.+.++.+.++-+...+..+..++ ...|..+.+++...|++++|...+-.+ ...--.....
T Consensus 896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr 975 (1139)
T 4fhn_B 896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLL 975 (1139)
T ss_dssp CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHH
Confidence 01134566667777777777777776666543221111 124667777777788888887777666 2122334555
Q ss_pred HHHHHHHhcCCH------------HHHHHHHHHHH-HcCCCCCCchHHHHHHHHhhcccchHHHHHH-HHHH
Q 048364 324 SFLAACKEHKQF------------DMAERVIKQAL-RMVKPENDGGVFTLICDLYTMNEKWEGAERV-RKLM 381 (400)
Q Consensus 324 ~l~~~~~~~~~~------------~~a~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m 381 (400)
.|+...+..|.. ++..+++..-. ....+...+..|..|-..+...|++-.|-.+ |+..
T Consensus 976 ~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~ 1047 (1139)
T 4fhn_B 976 DFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKL 1047 (1139)
T ss_dssp HHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHH
Confidence 566655555543 33333333222 1211212334455555555666777666553 4443
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.18 E-value=0.5 Score=44.74 Aligned_cols=121 Identities=12% Similarity=0.118 Sum_probs=79.8
Q ss_pred HHHHHHHhcccch-hHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhC-CHHHHHHHHhhC-----------CCCChhh-
Q 048364 19 ILHILKSCTHFNN-LTVIHHLHSHILKLGFISHVYVATSLLHEY-VVT-SFGFARKLFDEL-----------PERNAVT- 83 (400)
Q Consensus 19 ~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g-~~~~a~~~~~~~-----------~~~~~~~- 83 (400)
...+++.+...|+ .+.|..+++.+.+..+..+......++..+ ..+ +--+|.+++.+. ...+...
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3455666666666 588999999998876544444444555555 332 222344433332 2222211
Q ss_pred ----H-HHH----HHHHHcCCChHHHHHHHhhCC--CC-ChhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 048364 84 ----W-NTM----IKGYSKSGNVCEARDFFERMP--LR-NVASWSAMIAAYLNAGAYDPGLKLFREMI 139 (400)
Q Consensus 84 ----~-~~l----~~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 139 (400)
+ ..| .+.+...|+++-|+++-++.. .| +-.+|..|..+|...|+++.|+-.++.+.
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 0 112 345677999999999999865 45 56799999999999999999999998883
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.34 E-value=5.7 Score=35.22 Aligned_cols=251 Identities=9% Similarity=0.054 Sum_probs=139.7
Q ss_pred cCCcchHHHHHHHHHhcCC----CCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHh-ccccchHH--HHHHHHHHHHh
Q 048364 125 AGAYDPGLKLFREMISNEG----LTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK-NEWELNEQ--IATILVDMYAK 197 (400)
Q Consensus 125 ~g~~~~a~~~~~~m~~~~~----~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~--~~~~l~~~~~~ 197 (400)
.|+++.|++.+..+.+... ..........++..|...++++. ..+.+..+.+ +|..+... ....++.....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~--l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDD--LNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHH--HHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence 3788999998888874322 33445668888999999999988 6555555443 33222221 12223333333
Q ss_pred cCCHHH--HHHHHHhccCC-Cc---------ccHHHHHHHHHhCCChhhHHHHHHHHHHC--CCCCC---HHHHHHHHHH
Q 048364 198 CGFLKY--ALMVFELMEER-NV---------ISWTALICGSAHRGYSEDALSLFEMMQAT--GVKPN---EMTFTGVLTA 260 (400)
Q Consensus 198 ~g~~~~--A~~~~~~~~~~-~~---------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~---~~~~~~l~~~ 260 (400)
....+. -..+.+....- +. .....|...+...|++.+|..++.++... |.... ...+...++.
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 333322 22333333221 11 12345778888999999999999988643 32222 2356667788
Q ss_pred HHhcCChhhHHHHHHHhhhhc-CC--CCC--hhhHHHHHHHHHhcCChHHHHHHHHhc----cCCccHHHHHHH----HH
Q 048364 261 CVHTGLVDEGRKYFKMIDEEY-DL--EPR--IQHYGCMVDLFGKAGFLEEAYEVIRTM----RLEPNVIIWGSF----LA 327 (400)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~-~~--~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~p~~~~~~~l----~~ 327 (400)
|...+++..|..++.++.... .. .|+ ...+...+..+...+++.+|.+.|.+. ....|...+..+ +.
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~ 266 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVY 266 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 889999999999988875321 11 222 234566777788888999888888777 111122222222 12
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcc--cchHHHHHHH
Q 048364 328 ACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN--EKWEGAERVR 378 (400)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~ 378 (400)
+..-.+....-..++......... ++...+..++.+|... .+|+...+.+
T Consensus 267 ~~iLa~~~~~~~~ll~~~~~~~~~-~~l~~~~~L~k~f~~~~L~~~~~~~~~~ 318 (445)
T 4b4t_P 267 FLVLSPYGNLQNDLIHKIQNDNNL-KKLESQESLVKLFTTNELMRWPIVQKTY 318 (445)
T ss_dssp HHHHSSCSSTTHHHHHSHHHHSSC-HHHHHHHHHHHHHHHCCSSSHHHHHHHT
T ss_pred HHHhCCCCchHHHHHHHHhhcccc-cccHHHHHHHHHHHhchHhhhHHHHHHH
Confidence 222233333333444444333311 3445666666666533 3444444433
No 248
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=92.09 E-value=5.5 Score=34.51 Aligned_cols=57 Identities=11% Similarity=0.013 Sum_probs=26.2
Q ss_pred HHHHHHhcCChhhHHHHHHHhhhhcCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHhc
Q 048364 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPR----IQHYGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
++..|...|++.+|.+++..+.+...-..+ ..++..-++.|...+++.++...+...
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 444555555555555555555433221111 122333344455555555555555444
No 249
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.09 E-value=1.3 Score=31.84 Aligned_cols=71 Identities=11% Similarity=0.057 Sum_probs=48.9
Q ss_pred CCChhhHHHHHHHHHhcCChH---HHHHHHHhc-cCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCch
Q 048364 284 EPRIQHYGCMVDLFGKAGFLE---EAYEVIRTM-RLEP--NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356 (400)
Q Consensus 284 ~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 356 (400)
.|+..+--.+.-++.+..+.+ ++..+++++ ...| .....-.+.-++.+.|++++|.++.+.+++.. | .+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e-P-~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE-R-NNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC-C-CCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-C-CcHH
Confidence 566666666667777766544 567777777 3334 33344556678888999999999999999888 7 4433
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.99 E-value=1.6 Score=32.29 Aligned_cols=111 Identities=10% Similarity=-0.006 Sum_probs=63.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC-----CCc-------ccHHHHHHHHHhCCChhhHHHHHHHHHHCC-CCCCH-HHH
Q 048364 189 TILVDMYAKCGFLKYALMVFELMEE-----RNV-------ISWTALICGSAHRGYSEDALSLFEMMQATG-VKPNE-MTF 254 (400)
Q Consensus 189 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~-~~~ 254 (400)
-.-+..+...|.++.|+-+.+.+.. ++. .++..+.+++...|++..|...|++..+.. .-+.. .+.
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 3445667788899998888776553 332 145667788899999999999999875421 11111 111
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc
Q 048364 255 TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 255 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
..+- . ..... ......++...---+..||.+.|++++|+.+++.+
T Consensus 104 ~~~~-~--~ss~p-----------~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 104 PSTG-N--SASTP-----------QSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cccc-c--cCCCc-----------ccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1110 0 00000 00012233344444777888888888888888876
No 251
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.04 E-value=2.2 Score=30.14 Aligned_cols=63 Identities=8% Similarity=0.149 Sum_probs=50.0
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHH
Q 048364 231 YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295 (400)
Q Consensus 231 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (400)
|.-+..+-++.+....+.|++......+++|.+.+++..|.++|+-++.+.+. ...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~--~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC--chhhHHHHHH
Confidence 34456666777777788999999999999999999999999999999876543 3556777654
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.02 E-value=2.1 Score=43.30 Aligned_cols=124 Identities=8% Similarity=-0.060 Sum_probs=82.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--cCCc----------------
Q 048364 256 GVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--RLEP---------------- 317 (400)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~p---------------- 317 (400)
.++..+...+..+.+..+..... .++..--.+..+|...|++++|.+.|++. ++.+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 45555666677766665444332 23333344667788889999999988877 2111
Q ss_pred -------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc----hHHHHHHHHhhcccchHHHHHHHHHHhcccc
Q 048364 318 -------NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDG----GVFTLICDLYTMNEKWEGAERVRKLMLNQNV 386 (400)
Q Consensus 318 -------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 386 (400)
-..-|..++..+-+.+.++.+.++.+.+++...+ .+. ..|..+...+...|+|++|...+-.+.+...
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~-~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKET-DDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCS-CCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccC-CChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 1123667778888888888888888888876522 332 2567778888888999998888776665443
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.86 E-value=0.69 Score=32.72 Aligned_cols=71 Identities=11% Similarity=0.054 Sum_probs=47.6
Q ss_pred CCChhhHHHHHHHHHhcCCh---HHHHHHHHhc-cCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCch
Q 048364 284 EPRIQHYGCMVDLFGKAGFL---EEAYEVIRTM-RLEP--NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGG 356 (400)
Q Consensus 284 ~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 356 (400)
.|+..+--.+.-++.+..+. .+++.+++++ ...| ....+-.+.-++.+.|++++|.+..+.+++.. | .+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e-P-~N~Q 113 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE-R-NNKQ 113 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-T-TCHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC-C-CCHH
Confidence 45555555566666666554 4577777777 3345 23455566778888888888888888888888 7 4443
No 254
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.83 E-value=6.3 Score=32.82 Aligned_cols=180 Identities=12% Similarity=0.066 Sum_probs=98.9
Q ss_pred HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHH----HHH
Q 048364 62 VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKL----FRE 137 (400)
Q Consensus 62 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~----~~~ 137 (400)
..|++=+|.+.+ .++..-|.+.+++++|++++..- ...+.+.|+...|.++ .+.
T Consensus 25 ~~G~yYEAhQ~~-----------Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev 82 (312)
T 2wpv_A 25 KAGDYYEAHQTL-----------RTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEV 82 (312)
T ss_dssp HHTCHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccChHHHHHHH-----------HHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHH
Confidence 556666666644 45566677777888887776432 2334455665555553 333
Q ss_pred HHhcCCCCCCHHHHHHHHHHhhcccchhh---hhhhhhhhHHHhccc--cchHHHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048364 138 MISNEGLTPDQMTIGAVLSGCSHLGSVGL---LMGKSAHGFIVKNEW--ELNEQIATILVDMYAKCGFLKYALMVFELME 212 (400)
Q Consensus 138 m~~~~~~~p~~~~~~~ll~~~~~~~~~~~---~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 212 (400)
.. +.+++++......++..+......+. ....+...+-.+.|- .-++.....+...|.+.|++.+|+..|-.-.
T Consensus 83 ~~-~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~ 161 (312)
T 2wpv_A 83 YD-LAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT 161 (312)
T ss_dssp HH-HTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HH-HcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Confidence 33 55667776666666665544332211 012333333333332 2367788889999999999999998876332
Q ss_pred CCCcccHHHHHHHHHhC---CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhh
Q 048364 213 ERNVISWTALICGSAHR---GYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE 279 (400)
Q Consensus 213 ~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (400)
..+...+..++.-+... |...++ +...-..++ -|.-.++...|..+++...+
T Consensus 162 ~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 162 HDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 22344444444333222 322221 111122222 24457888888888876654
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.80 E-value=0.93 Score=39.44 Aligned_cols=65 Identities=12% Similarity=0.107 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--------cCCccHHH
Q 048364 255 TGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--------RLEPNVII 321 (400)
Q Consensus 255 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--------~~~p~~~~ 321 (400)
..++.++...|+.+++...+..+... .+.+...+..+|.+|.+.|+..+|++.|+.. |+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34555666677777777777666642 2335566777777777777777777776654 56665543
No 256
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.52 E-value=8.6 Score=32.33 Aligned_cols=150 Identities=10% Similarity=0.068 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHH----HHHHHHCCCCCCHHHHHHHHHHH
Q 048364 186 QIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSL----FEMMQATGVKPNEMTFTGVLTAC 261 (400)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~l~~~~ 261 (400)
.+|.++..=|.+.+++++|.+++-.- ...+.+.|+...|.++ ++-..+.++++|......++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45556667788889999988876442 2345566666544443 35555667788887777777776
Q ss_pred HhcCChhh-HHHHHHHhhh---hcC--CCCChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHH-----------
Q 048364 262 VHTGLVDE-GRKYFKMIDE---EYD--LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGS----------- 324 (400)
Q Consensus 262 ~~~~~~~~-a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~----------- 324 (400)
.....-+- =..+.+.+.+ +.| ..-++.....+...|.+.+++.+|..-|- .+-.+....+..
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~ 183 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDES 183 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCG
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCC
Confidence 65543211 1222222221 122 23366677778888888888888877663 122222222222
Q ss_pred ---------HHHHHHhcCCHHHHHHHHHHHHH
Q 048364 325 ---------FLAACKEHKQFDMAERVIKQALR 347 (400)
Q Consensus 325 ---------l~~~~~~~~~~~~a~~~~~~~~~ 347 (400)
.+--|...++...|..+++...+
T Consensus 184 ~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 184 HTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22234556688888887766554
No 257
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.38 E-value=3.3 Score=27.43 Aligned_cols=62 Identities=18% Similarity=0.120 Sum_probs=43.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHH
Q 048364 191 LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT 255 (400)
Q Consensus 191 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 255 (400)
-+..+.+.|++++|..+.+...-||...|-++.. .+.|..+++..-+.++...| .|....|.
T Consensus 45 R~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 45 RISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 3455678888888888888888888888877643 47787787777777777665 34444443
No 258
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.37 E-value=3.4 Score=27.54 Aligned_cols=57 Identities=21% Similarity=0.339 Sum_probs=42.0
Q ss_pred HHHHHHHHhc---cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHH
Q 048364 304 EEAYEVIRTM---RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362 (400)
Q Consensus 304 ~~a~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 362 (400)
-+..+-++.+ .+.|+..+..+.+++|.+.+++..|.++++-++.+-.. ...+|..++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~l 86 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHH
Confidence 3444444444 78899999999999999999999999999988877633 345566554
No 259
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.00 E-value=3.6 Score=27.30 Aligned_cols=62 Identities=18% Similarity=0.147 Sum_probs=41.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHH
Q 048364 191 LVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFT 255 (400)
Q Consensus 191 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 255 (400)
-+..+.+.|++++|..+.+...-||...|-++.. .+.|..+++..-+.++...| .|....|.
T Consensus 46 R~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 46 RLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 3445667888888888888888788887776643 46677777777776666654 34444443
No 260
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=88.89 E-value=4.9 Score=30.82 Aligned_cols=49 Identities=10% Similarity=0.114 Sum_probs=29.5
Q ss_pred CChHHHHHHHHhc---cCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 301 GFLEEAYEVIRTM---RLE-PNVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 301 g~~~~a~~~~~~~---~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
+...++.++|..| ++- --...|......+-..|++.+|..+|+..++.+
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3355666666665 222 234456666666666777777777777776666
No 261
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.80 E-value=9.7 Score=32.01 Aligned_cols=167 Identities=16% Similarity=0.113 Sum_probs=85.3
Q ss_pred HHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHH----HHHHhcCCCCCCHHHHHHHHHHhhc
Q 048364 85 NTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLF----REMISNEGLTPDQMTIGAVLSGCSH 160 (400)
Q Consensus 85 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~m~~~~~~~p~~~~~~~ll~~~~~ 160 (400)
.++..-|.+.+++++|++++..- ...+.+.|+...|.++. +... +.++++|......++..+..
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~-~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFR-QAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHH-HHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHh
Confidence 44455566777777777765331 22234444444444333 2222 44556666555555555544
Q ss_pred ccchhh---hhhhhhhhHHHhcc--ccchHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhH
Q 048364 161 LGSVGL---LMGKSAHGFIVKNE--WELNEQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDA 235 (400)
Q Consensus 161 ~~~~~~---~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 235 (400)
....+. ....+...+-.+.| ..-++.....+...|.+.+++.+|+..|-.-.++.+..|..++.-+...+...++
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~ 186 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA 186 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH
Confidence 432111 01222333333333 2336677788899999999999999888432222234554444333333222111
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhh
Q 048364 236 LSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMID 278 (400)
Q Consensus 236 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (400)
+...-..++ -|.-.++...|..+++...
T Consensus 187 --------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 187 --------------PLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp --------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 222222333 3455678888877665554
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.65 E-value=5.1 Score=35.32 Aligned_cols=108 Identities=10% Similarity=-0.019 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhhhc-CCCCChhhHHHHHHHHHhcCChHHHHHHHHhc------cCCccHHH--HH
Q 048364 253 TFTGVLTACVHTGLVDEGRKYFKMIDEEY-DLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM------RLEPNVII--WG 323 (400)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~------~~~p~~~~--~~ 323 (400)
+...+...+.+.|+++.|.+.+.++.... +...-...+-.+++.+...+++..+...+.+. +-.|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 56667777888888888888888777532 12223455667777777888888887777776 22233321 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHH
Q 048364 324 SFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLI 361 (400)
Q Consensus 324 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 361 (400)
.-...+...+++..|...|-+..... .......+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~-~~~e~~~~~~~ 249 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF-TSIELTSYESI 249 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS-CCSCHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC-CccchhhHHHH
Confidence 11222345677888888887777665 32333344333
No 263
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.97 E-value=5.3 Score=28.28 Aligned_cols=73 Identities=16% Similarity=-0.013 Sum_probs=49.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---hhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccH
Q 048364 246 GVKPNEMTFTGVLTACVHTGL---VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNV 319 (400)
Q Consensus 246 ~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~ 319 (400)
+-.|+..|--....++.+..+ ..+++.+++.+.+. +..-....+-.|.-++.+.|++++|.+..+.+ .+.|+-
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 445666666666667776654 44677888887754 31113455566777888999999999998888 667753
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.59 E-value=6.6 Score=31.73 Aligned_cols=114 Identities=10% Similarity=0.056 Sum_probs=63.3
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCCh----hhHHHHHHHHHh
Q 048364 224 CGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRI----QHYGCMVDLFGK 299 (400)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 299 (400)
..+.+.|+.++++.....-++.. +-|...-..++.-+|-.|+++.|.+-++...+- .|+. ..|..+|++=
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~aE-- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAA-- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHH--
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHHH--
Confidence 34566777777777777766653 336666667777777788888887777766632 3332 2333333321
Q ss_pred cCChHHHH-HHHHhc---c--CCccHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHcC
Q 048364 300 AGFLEEAY-EVIRTM---R--LEPNVIIWGSFLAAC--KEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 300 ~g~~~~a~-~~~~~~---~--~~p~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~ 349 (400)
... ++|..- + -.|.. -...++.+. ...|+.++|..+-.++.+.-
T Consensus 79 -----~~R~~vfaG~~~P~~~g~~~~-w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~a 130 (273)
T 1zbp_A 79 -----QARKDFAQGAATAKVLGENEE-LTKSLVSFNLSMVSQDYEQVSELALQIEELR 130 (273)
T ss_dssp -----HHHHHHTTSCCCEECCCSCHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHcCCCCCCCCCCCHH-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Confidence 111 122211 0 01222 233344443 34577788877777777665
No 265
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=87.53 E-value=8 Score=29.52 Aligned_cols=54 Identities=9% Similarity=0.073 Sum_probs=23.3
Q ss_pred hhCCCCChhhHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCC
Q 048364 74 DELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127 (400)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 127 (400)
+.+..++...-...+.++.+.++.+....+.+.+..++...-...+.++.+.|+
T Consensus 52 ~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 52 KALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 333334444444444444444444333333333444444444444444444443
No 266
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.23 E-value=14 Score=32.01 Aligned_cols=90 Identities=10% Similarity=-0.078 Sum_probs=50.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC----CCc-----ccHHHHHHHHHhCCChhhHHHHHHHHHHC--CCCCCHHHHHHH-
Q 048364 190 ILVDMYAKCGFLKYALMVFELMEE----RNV-----ISWTALICGSAHRGYSEDALSLFEMMQAT--GVKPNEMTFTGV- 257 (400)
Q Consensus 190 ~l~~~~~~~g~~~~A~~~~~~~~~----~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~l- 257 (400)
.++..|...|++.+|.+++.++.+ .|. ..|-.-+..|...++..++...+...... .+.|++.....+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 567777777888887777766653 121 23444556677777777777777665432 122333222111
Q ss_pred ---HHHHH-hcCChhhHHHHHHHhhh
Q 048364 258 ---LTACV-HTGLVDEGRKYFKMIDE 279 (400)
Q Consensus 258 ---~~~~~-~~~~~~~a~~~~~~~~~ 279 (400)
...+. ..+++..|...|-+..+
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 11234 56777777776655543
No 267
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=86.78 E-value=9.2 Score=29.45 Aligned_cols=13 Identities=15% Similarity=0.005 Sum_probs=5.0
Q ss_pred HHHHHHHHHHhcC
Q 048364 253 TFTGVLTACVHTG 265 (400)
Q Consensus 253 ~~~~l~~~~~~~~ 265 (400)
.-...+.++.+.+
T Consensus 159 vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 159 VRQSAADALGEIG 171 (211)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 3333333444333
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.89 E-value=13 Score=32.65 Aligned_cols=96 Identities=7% Similarity=-0.069 Sum_probs=60.1
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHH---
Q 048364 218 SWTALICGSAHRGYSEDALSLFEMMQATG--VKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGC--- 292 (400)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--- 292 (400)
++..+...|.+.|+++.|.+.|.++...- ..--...+..+++.+...+++..+...++++.....-.++....+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 56667777888888888888888877642 2223356667777777888888888888777543222233222211
Q ss_pred -HHHHHHhcCChHHHHHHHHhc
Q 048364 293 -MVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 293 -l~~~~~~~g~~~~a~~~~~~~ 313 (400)
-+..+...+++..|.+.|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 122334567788887777665
No 269
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.53 E-value=7.8 Score=27.46 Aligned_cols=49 Identities=20% Similarity=0.370 Sum_probs=40.3
Q ss_pred hccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHH
Q 048364 312 TMRLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLIC 362 (400)
Q Consensus 312 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 362 (400)
.+++.|+..+....+++|.+.+|+..|.++++-++.+-.+ ...+|..++
T Consensus 81 ~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~--~~~iY~y~l 129 (152)
T 2y69_E 81 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVI 129 (152)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC--chhhHHHHH
Confidence 3488899999999999999999999999999999887733 455676655
No 270
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=84.71 E-value=9.5 Score=27.77 Aligned_cols=51 Identities=4% Similarity=-0.042 Sum_probs=29.3
Q ss_pred HHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhcccccc
Q 048364 338 AERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRK 388 (400)
Q Consensus 338 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 388 (400)
+..+|..|...++-...+..|...+..+...|++++|.++++.=++.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 556666666665433445555555555666666666666666555554444
No 271
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=84.47 E-value=12 Score=28.75 Aligned_cols=78 Identities=10% Similarity=0.069 Sum_probs=34.4
Q ss_pred chhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCC
Q 048364 50 HVYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGA 127 (400)
Q Consensus 50 ~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 127 (400)
+..+-...+..+ ..|..+....+.+.+..++...-...+.++.+.++.+....+.+.+..++...-...+.++.+.|+
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 110 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 333333344444 444433333334444444444444445555555544333333344444444444444444444444
No 272
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.17 E-value=11 Score=27.13 Aligned_cols=72 Identities=15% Similarity=-0.044 Sum_probs=50.6
Q ss_pred CCCCHHHHHHHHHHHHhcCC---hhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc-cCCccH
Q 048364 247 VKPNEMTFTGVLTACVHTGL---VDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-RLEPNV 319 (400)
Q Consensus 247 ~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~p~~ 319 (400)
-.|+..+--.+..++.+..+ ..+++.+++.+.+. +..-.....-.|.-++.+.|++++|.++.+.+ .+.|+-
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 35677776667777777665 44678888888753 22223445556777899999999999999988 667743
No 273
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=82.64 E-value=13 Score=27.56 Aligned_cols=32 Identities=9% Similarity=0.239 Sum_probs=20.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 318 NVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
-...|......+-..|++.+|..+|+..++.+
T Consensus 95 ~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 95 LAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34455666666666677777777777766666
No 274
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=82.36 E-value=3.2 Score=33.56 Aligned_cols=56 Identities=20% Similarity=0.348 Sum_probs=41.6
Q ss_pred HHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 295 DLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
....+.|.+++|++....- +-.| |...-..++..+|-.|+++.|.+-++...+.. |
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~-p 62 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-P 62 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-G
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-c
Confidence 3456778888888777665 4445 56666777888888888888888888888887 5
No 275
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=81.11 E-value=16 Score=27.75 Aligned_cols=56 Identities=11% Similarity=0.055 Sum_probs=29.3
Q ss_pred HhhCCCCChhhHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCc
Q 048364 73 FDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128 (400)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 128 (400)
++.+..+|...-...+..+.+.+..+....+.+.+..++...-...+.++.+.|..
T Consensus 20 i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~ 75 (201)
T 3ltj_A 20 IKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE 75 (201)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG
T ss_pred HHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH
Confidence 33444455555555555555555544444455555555555555555555555543
No 276
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=80.01 E-value=13 Score=30.02 Aligned_cols=14 Identities=7% Similarity=0.076 Sum_probs=6.7
Q ss_pred HhCCHHHHHHHHhh
Q 048364 62 VVTSFGFARKLFDE 75 (400)
Q Consensus 62 ~~g~~~~a~~~~~~ 75 (400)
..|+.+-+..+++.
T Consensus 48 ~~g~~~~v~~Ll~~ 61 (285)
T 1wdy_A 48 QMSREDIVELLLRH 61 (285)
T ss_dssp HTTCHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHc
Confidence 44555444444443
No 277
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.40 E-value=26 Score=29.16 Aligned_cols=152 Identities=9% Similarity=0.054 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHH----HHHHHHHCCCCCCHHHHHHHHHH
Q 048364 185 EQIATILVDMYAKCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS----LFEMMQATGVKPNEMTFTGVLTA 260 (400)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~m~~~~~~p~~~~~~~l~~~ 260 (400)
...|.++..=|.+.+++++|.+++..- ...+.+.|+...|.+ +.+-..+.+.+++......++..
T Consensus 33 hQ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 33 HQTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 345566777788888898888876443 234556677655554 45555667888888888888877
Q ss_pred HHhcCChh-hHHHHHHHhhh---hcC--CCCChhhHHHHHHHHHhcCChHHHHHHHHhc-----------------c---
Q 048364 261 CVHTGLVD-EGRKYFKMIDE---EYD--LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM-----------------R--- 314 (400)
Q Consensus 261 ~~~~~~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-----------------~--- 314 (400)
+.....-+ .-.++++.+.+ +.| ...++.....+...|.+.|++.+|+..|-.- .
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~ 181 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDD 181 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCC
Confidence 65533211 12233333331 112 2246777888899999999999998866311 1
Q ss_pred CCccH-HHH-HHHHHHHHhcCCHHHHHHHHHHHHH
Q 048364 315 LEPNV-IIW-GSFLAACKEHKQFDMAERVIKQALR 347 (400)
Q Consensus 315 ~~p~~-~~~-~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (400)
..|.. ..| ...+--|...|+...|..+++...+
T Consensus 182 ~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 182 IEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 12211 111 1222345567788888888887654
No 278
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.26 E-value=41 Score=30.26 Aligned_cols=62 Identities=11% Similarity=0.006 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhccCCCc-cc------H-HHHHHHHHhCCChhhHHHHHHHHHHC
Q 048364 184 NEQIATILVDMYAKCGFLKYALMVFELMEERNV-IS------W-TALICGSAHRGYSEDALSLFEMMQAT 245 (400)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~------~-~~l~~~~~~~~~~~~a~~~~~~m~~~ 245 (400)
...++|.++..|...+.++.|..+..+..-|.. .. | .-+...+.-.+++.+|.+.+....+.
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 456778888889999999999999888865532 22 1 12345566788888888888877654
No 279
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=73.07 E-value=11 Score=23.81 Aligned_cols=62 Identities=10% Similarity=0.098 Sum_probs=42.6
Q ss_pred hhHHHHhCCCCCCchhHHHHHHHhcccc-hhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCC
Q 048364 3 LFSQMHRQSVPSDSFSILHILKSCTHFN-NLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTS 65 (400)
Q Consensus 3 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~ 65 (400)
+.+.|++.|++++..- ..++..+...+ ..-.+.++++.+.+.++..+..|....+..+ ..|-
T Consensus 4 ~~~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 4 NNTALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3456788898887655 45667776665 6778889999998877665665555555655 5554
No 280
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=72.58 E-value=18 Score=24.01 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=25.8
Q ss_pred HHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 048364 91 YSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMI 139 (400)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 139 (400)
+...|++++|..+.+....||...|.+|.. .+.|..+++...+..+.
T Consensus 49 LmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp HHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred HHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 445566666666666655566665554443 24555555555554554
No 281
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=71.76 E-value=19 Score=23.94 Aligned_cols=46 Identities=11% Similarity=0.182 Sum_probs=23.3
Q ss_pred HHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHH
Q 048364 91 YSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREM 138 (400)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 138 (400)
+...|++++|..+.+....||...|.+|.. .+.|..+++...+..+
T Consensus 50 LmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRL 95 (116)
T ss_dssp HHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHH
T ss_pred HHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 445555555555555555555555544433 2444445554444444
No 282
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=69.29 E-value=25 Score=24.69 Aligned_cols=64 Identities=14% Similarity=0.170 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCCc---ccHHHHHHHHHhCCC--hhhHHHHHHHHHHCCCCCCH
Q 048364 188 ATILVDMYAKCGFLKYALMVFELMEERNV---ISWTALICGSAHRGY--SEDALSLFEMMQATGVKPNE 251 (400)
Q Consensus 188 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~ 251 (400)
...++.-|...|+.++|.+.++++..|.- .....+..++-+.+. .+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 35677888889999999999999876522 233444455555432 35677788888777655443
No 283
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=67.25 E-value=50 Score=32.60 Aligned_cols=87 Identities=8% Similarity=-0.125 Sum_probs=53.1
Q ss_pred HHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--cCCc-----------------
Q 048364 257 VLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--RLEP----------------- 317 (400)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~p----------------- 317 (400)
++..|...+..+-+.++...+ +.++..--.+.++|...|++++|...|++. ++.+
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 555566667766555433222 223333334677888899999999999887 3211
Q ss_pred ------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 318 ------NVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 318 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
...-|..++..+-+.+-++-+.++.+.+++.-
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~ 927 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK 927 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Confidence 01145666666667777777777777777644
No 284
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=66.97 E-value=20 Score=28.05 Aligned_cols=45 Identities=18% Similarity=0.323 Sum_probs=28.7
Q ss_pred HHHHHHHhc---cCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 305 EAYEVIRTM---RLE-PNVIIWGSFLAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 305 ~a~~~~~~~---~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
++.++|..| ++- --...|......+-..|++.+|..+|+..++.+
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 444555544 322 244566666777777778888888887777776
No 285
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=63.84 E-value=68 Score=27.28 Aligned_cols=234 Identities=8% Similarity=-0.015 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhcCCCCCC--HHHHHHHHHHhhcccchhhhhhhhhhhHHHhccccchHHHHHHHHH
Q 048364 116 SAMIAAYLNAGAYDPGLKLFREMISNEGLTPD--QMTIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNEQIATILVD 193 (400)
Q Consensus 116 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 193 (400)
..++.-|...++.++|...++++. .|. ......++......++.+..++-.++..+.. ++-+.......+..
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~-----~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ 131 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLN-----LGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDK 131 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTT-----CCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC-----CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Q ss_pred HHHhcCC--------HHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048364 194 MYAKCGF--------LKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG 265 (400)
Q Consensus 194 ~~~~~g~--------~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 265 (400)
.+....+ ++..-.++.++...+.....-+-.. ...-....+.++++..... --..+....+-+.....+
T Consensus 132 lle~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~-~~~~~~~~~~~~l~~a~~~--L~~~~~~~~~~~~WG~g~ 208 (358)
T 3eiq_C 132 LLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSY-KGTVDCVQARAALDKATVL--LSMSKGGKRKDSVWGSGG 208 (358)
T ss_dssp HHHTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGG-C---CCHHHHHHHHHHHHH--HTC---------CCCCCC
T ss_pred HHHhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHH-hhcccchHHHHHHHHHHHH--HhccchHHHHHHhcCCCC
Q ss_pred ChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc--cCCccHHHHHHHHHHHHhcC--CHHHHHHH
Q 048364 266 LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM--RLEPNVIIWGSFLAACKEHK--QFDMAERV 341 (400)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~p~~~~~~~l~~~~~~~~--~~~~a~~~ 341 (400)
......++-+++.. ++.-|...|+.++|.+.++++ +.--...+...+..++-+.+ ..+....+
T Consensus 209 ~~~~veelkkki~~-------------lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~L 275 (358)
T 3eiq_C 209 GQQPVNHLVKEIDM-------------LLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDL 275 (358)
T ss_dssp SSSCHHHHHHHHHH-------------HHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred CCccHHHHHHHHHH-------------HHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHH
Q ss_pred HHHHHHcCCCCCCchHHHHHHHHhhcccchH
Q 048364 342 IKQALRMVKPENDGGVFTLICDLYTMNEKWE 372 (400)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 372 (400)
+..+...++. +.......+.+.+....+..
T Consensus 276 L~~L~~~gll-s~~q~~~Gf~~vl~~ldDl~ 305 (358)
T 3eiq_C 276 LKSLWKSSTI-TIDQMKRGYERIYNEIPDIN 305 (358)
T ss_dssp HHHHHHTTCS-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCC-CHHHHHHHHHHHHHhccHhh
No 286
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=62.44 E-value=25 Score=24.69 Aligned_cols=64 Identities=16% Similarity=0.336 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhCCCCCh---hhHHHHHHHHHhcCC--cchHHHHHHHHHhcCCCCCCH
Q 048364 84 WNTMIKGYSKSGNVCEARDFFERMPLRNV---ASWSAMIAAYLNAGA--YDPGLKLFREMISNEGLTPDQ 148 (400)
Q Consensus 84 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~~p~~ 148 (400)
...++.-|...|+.++|.+.++++..|.- .....+..++-+.++ .+.+..++..+. ..|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~-~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLW-KSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH-HTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH-HCCCcCHH
Confidence 34566667777777777777777765522 233333344444321 345666666665 44544433
No 287
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=62.05 E-value=23 Score=27.49 Aligned_cols=199 Identities=9% Similarity=-0.004 Sum_probs=91.2
Q ss_pred cccchhHHHHHHHHHHHHhCcccch---hhhhHHHHHHHhCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHcCCChHHH
Q 048364 27 THFNNLTVIHHLHSHILKLGFISHV---YVATSLLHEYVVTSFGFARKLFDELPERNA---VTWNTMIKGYSKSGNVCEA 100 (400)
Q Consensus 27 ~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a 100 (400)
++.|+.+.. +.+++.|..++. .-.+.+..+...|+.+-+..+++.-...+. ..-.+.+...+..|+.+-+
T Consensus 17 ~~~g~~~~~----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v 92 (240)
T 3eu9_A 17 TQYGIYERC----RELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMV 92 (240)
T ss_dssp HHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHH
T ss_pred HHcCChHHH----HHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHH
Confidence 445665444 444455654432 223334333378888888777776654321 1112334445566777666
Q ss_pred HHHHhhCCCC---ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCH---HHHHHHHHHhhcccchhhhhhhhhhh
Q 048364 101 RDFFERMPLR---NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQ---MTIGAVLSGCSHLGSVGLLMGKSAHG 174 (400)
Q Consensus 101 ~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~---~~~~~ll~~~~~~~~~~~~~a~~~~~ 174 (400)
..+++.-..+ +...++.+. ..+..|+.+- ++.+. +.|..++. .-.+.+..++...+. ..+..
T Consensus 93 ~~Ll~~g~~~~~~~~~g~t~l~-~A~~~~~~~~----~~~Ll-~~~~~~~~~~~~g~t~l~~a~~~~~~------~~~~~ 160 (240)
T 3eu9_A 93 VQLMKYGADPSLIDGEGCSCIH-LAAQFGHTSI----VAYLI-AKGQDVDMMDQNGMTPLMWAAYRTHS------VDPTR 160 (240)
T ss_dssp HHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHHH----HHHHH-HTTCCTTCCCTTSCCHHHHHHHHCCS------STTHH
T ss_pred HHHHHcCCCCcccCCCCCCHHH-HHHHcCHHHH----HHHHH-hcCCCccccCCCCCcHHHHHHHhCCh------HHHHH
Confidence 6666543222 222222332 3344455443 33333 33433322 122233333322221 22334
Q ss_pred HHHhccccchHHH---HHHHHHHHHhcCCHHHHHHHHHhccCCCc---ccHHHHHHHHHhCCChhhHHHHHHHH
Q 048364 175 FIVKNEWELNEQI---ATILVDMYAKCGFLKYALMVFELMEERNV---ISWTALICGSAHRGYSEDALSLFEMM 242 (400)
Q Consensus 175 ~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m 242 (400)
.+.+.|..++... -...+...+..|+.+-+.-+++.-..++. ...+ -+....+.|+.+-+..+++..
T Consensus 161 ~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 161 LLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGES-ALDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp HHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCB-HHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC-HHHHHHHcCcHHHHHHHHHhh
Confidence 4444444433221 11234455677888877777766444322 1122 233445667766555555443
No 288
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=61.10 E-value=25 Score=25.56 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCC---cccHHHHHHHHHhCCC--hhhHHHHHHHHHHCCCCCCH
Q 048364 188 ATILVDMYAKCGFLKYALMVFELMEERN---VISWTALICGSAHRGY--SEDALSLFEMMQATGVKPNE 251 (400)
Q Consensus 188 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~ 251 (400)
...++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 4567888888999999999999987652 2233444455555332 35567777777777655443
No 289
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=61.05 E-value=65 Score=26.98 Aligned_cols=89 Identities=16% Similarity=0.219 Sum_probs=49.8
Q ss_pred HHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC--CChhhHHH--HHH----HHHcCCChHHHHHHHhhC
Q 048364 37 HLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE--RNAVTWNT--MIK----GYSKSGNVCEARDFFERM 107 (400)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~--~~~~~~~~--l~~----~~~~~~~~~~a~~~~~~~ 107 (400)
+++..+.+.|+.|..+++.=++..+ ..=.++.+..+++.+.. +....+-+ ++. ...+..++++..++++..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~ 288 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKST 288 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 5666667777777766666666666 55567777777776652 22211111 111 123345788888888773
Q ss_pred -CCCChhhHHHHHHHHHhc
Q 048364 108 -PLRNVASWSAMIAAYLNA 125 (400)
Q Consensus 108 -~~~~~~~~~~l~~~~~~~ 125 (400)
+..+......++.-....
T Consensus 289 ~p~~~~~di~~li~~A~~l 307 (331)
T 3qye_A 289 LPNLGLVQMEKTINQVFEM 307 (331)
T ss_dssp TTCCCHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhC
Confidence 333444444555443343
No 290
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=60.57 E-value=64 Score=25.89 Aligned_cols=19 Identities=5% Similarity=-0.244 Sum_probs=8.2
Q ss_pred CCCChhhHHHHHHHHHhcC
Q 048364 108 PLRNVASWSAMIAAYLNAG 126 (400)
Q Consensus 108 ~~~~~~~~~~l~~~~~~~g 126 (400)
..++...-...+.++.+.|
T Consensus 64 ~d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 64 SDKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp TCSSHHHHHHHHHHHHHSC
T ss_pred cCCCHHHHHHHHHHHHHhc
Confidence 3444443344444444444
No 291
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=58.27 E-value=72 Score=27.68 Aligned_cols=16 Identities=19% Similarity=0.106 Sum_probs=8.1
Q ss_pred HHhcCCHHHHHHHHHh
Q 048364 195 YAKCGFLKYALMVFEL 210 (400)
Q Consensus 195 ~~~~g~~~~A~~~~~~ 210 (400)
.+..|+.+-+..+++.
T Consensus 219 A~~~~~~~~~~~Ll~~ 234 (437)
T 1n11_A 219 AAKQNQVEVARSLLQY 234 (437)
T ss_dssp HHHTTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHc
Confidence 3445555555555543
No 292
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=55.27 E-value=60 Score=28.22 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=38.5
Q ss_pred HhcccchhHHHHHHHHHHHHhCcccchh---hhhHHHHHHHhCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHcCCChH
Q 048364 25 SCTHFNNLTVIHHLHSHILKLGFISHVY---VATSLLHEYVVTSFGFARKLFDELPERN---AVTWNTMIKGYSKSGNVC 98 (400)
Q Consensus 25 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 98 (400)
..+..|+.+-+ +.+++.|..++.. ..+.+..+...|..+-+..+++.-...+ .... +.+...+..|+.+
T Consensus 20 ~Aa~~g~~~~v----~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~g~~~ 94 (437)
T 1n11_A 20 VASFMGHLPIV----KNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARIGHTN 94 (437)
T ss_dssp HHHHHTCHHHH----HHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC-CHHHHHHHHTCHH
T ss_pred HHHHCCCHHHH----HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHCCCHH
Confidence 33445555433 3334555554432 2333333337777777777776544322 1111 2334445566666
Q ss_pred HHHHHHhhC
Q 048364 99 EARDFFERM 107 (400)
Q Consensus 99 ~a~~~~~~~ 107 (400)
-+.-+++.-
T Consensus 95 ~v~~Ll~~g 103 (437)
T 1n11_A 95 MVKLLLENN 103 (437)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhCC
Confidence 666666553
No 293
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=54.65 E-value=22 Score=25.94 Aligned_cols=63 Identities=16% Similarity=0.326 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhCCCCC---hhhHHHHHHHHHhcCC--cchHHHHHHHHHhcCCCCCC
Q 048364 84 WNTMIKGYSKSGNVCEARDFFERMPLRN---VASWSAMIAAYLNAGA--YDPGLKLFREMISNEGLTPD 147 (400)
Q Consensus 84 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~~p~ 147 (400)
.+.++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+. ..++-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~-~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLW-KSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH-HTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH-HCCCcCH
Confidence 3455666666677777777777666542 1223333333333221 334555555555 3444333
No 294
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=53.47 E-value=31 Score=25.06 Aligned_cols=59 Identities=8% Similarity=0.094 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhCcccc-hhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHHH
Q 048364 33 TVIHHLHSHILKLGFISH-VYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGY 91 (400)
Q Consensus 33 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 91 (400)
+.+.++|..|...|+-.. ...|......+ ..|++.+|..+|+...+.+......|...+
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~ 142 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQY 142 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 448899999999987654 44677777777 999999999999998877666666665544
No 295
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=51.52 E-value=25 Score=25.25 Aligned_cols=61 Identities=7% Similarity=-0.009 Sum_probs=37.9
Q ss_pred hhHHHHhCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCC
Q 048364 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTS 65 (400)
Q Consensus 3 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~ 65 (400)
+-+.+++.|++++..-. .+++.+...+ .-.|.++++.+.+.++..+..|.-..+..+ ..|-
T Consensus 6 ~~~~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 6 WKSDLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHHHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 34566778888776543 3445555555 678899999988877665554433334444 5553
No 296
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=50.97 E-value=40 Score=24.34 Aligned_cols=62 Identities=10% Similarity=0.052 Sum_probs=40.9
Q ss_pred hhHHHHhCCCCCCchhHHHHHHHhcccc-hhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCC
Q 048364 3 LFSQMHRQSVPSDSFSILHILKSCTHFN-NLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTS 65 (400)
Q Consensus 3 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~ 65 (400)
+.+.|++.|++++..-.. ++..+...+ ..-.|.++++.+.+.++..+..|.-..+..+ ..|-
T Consensus 4 ~~~~l~~~g~r~T~qR~~-Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 4 NNQALKDAGLKVTLPRLK-ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHHHHTTCCCCHHHHH-HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 345678889887766543 455555555 6788999999998887665555443444444 5554
No 297
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.64 E-value=47 Score=29.91 Aligned_cols=63 Identities=13% Similarity=0.086 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCCh--hh-HHHHHHHHHhcCChHHHHHHHHhc
Q 048364 251 EMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRI--QH-YGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~-~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
...++.+++.|...+.++.|..+..+..--....++. .. +-.+++.+.-.+++.+|.+.+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3456777777888888888888877664100001111 11 123455666777888887777765
No 298
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=50.10 E-value=82 Score=24.88 Aligned_cols=93 Identities=8% Similarity=-0.079 Sum_probs=45.0
Q ss_pred HHHHHHhcCChhhHHHHHHHhhhhc-CCCC----ChhhHHHHHHHHHhcCChHHHHHHHHhccCCccHHHHHHHHHHHHh
Q 048364 257 VLTACVHTGLVDEGRKYFKMIDEEY-DLEP----RIQHYGCMVDLFGKAGFLEEAYEVIRTMRLEPNVIIWGSFLAACKE 331 (400)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~ 331 (400)
-++.+....++++|..++++..+.. +.++ ........+..-.....-.-+..+.+++...++.......+..+.+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~~~~~~~~r~~v~~L~r 103 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILSSNEIVHLKSGTENMIK 103 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4666777777777777777665321 1111 0111122222222222222233333333224444455555666666
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 048364 332 HKQFDMAERVIKQALRMV 349 (400)
Q Consensus 332 ~~~~~~a~~~~~~~~~~~ 349 (400)
.|+.++|.++|=+.....
T Consensus 104 Lg~~~~A~~lfL~~rs~~ 121 (235)
T 2d2s_A 104 LGLPEQALDLFLQNRSNF 121 (235)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHH
Confidence 777777776666655443
No 299
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=50.04 E-value=86 Score=24.75 Aligned_cols=88 Identities=15% Similarity=0.083 Sum_probs=57.7
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHH
Q 048364 222 LICGSAHRGYSEDALSLFEMMQAT--GVKP----NEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVD 295 (400)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~m~~~--~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (400)
-++.+....++++|..++++..+. +.++ +.......+..-.....-.-+..+.+.+. . .++.......+.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T---CSSHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h---cCCHHHHHHHHH
Confidence 478889999999999999987653 3332 11222333333333334444455555553 2 455666777788
Q ss_pred HHHhcCChHHHHHHHHhc
Q 048364 296 LFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 296 ~~~~~g~~~~a~~~~~~~ 313 (400)
.+.+.|+.++|.++|-+.
T Consensus 100 ~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHH
Confidence 999999999999999876
No 300
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=49.68 E-value=38 Score=28.50 Aligned_cols=73 Identities=16% Similarity=0.345 Sum_probs=37.8
Q ss_pred HHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCC-ChhhHHH---HHHHH---HcCCChHHHHHHHhhCC
Q 048364 37 HLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPER-NAVTWNT---MIKGY---SKSGNVCEARDFFERMP 108 (400)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~-~~~~~~~---l~~~~---~~~~~~~~a~~~~~~~~ 108 (400)
+++..+.+.|+.|..+++.=++..+ ..=.++.+..+++.+... +...+.. ++..+ .-..++++...+++.++
T Consensus 214 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~l~~valaiL~~~~~~Ll~~d~~~il~~L~~lp 293 (334)
T 2qq8_A 214 KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDILTKMDFIHMAQFLTRLP 293 (334)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhCC
Confidence 3555556666666666655555555 555566666666665421 1111111 11111 11346777777777765
Q ss_pred C
Q 048364 109 L 109 (400)
Q Consensus 109 ~ 109 (400)
.
T Consensus 294 ~ 294 (334)
T 2qq8_A 294 E 294 (334)
T ss_dssp T
T ss_pred C
Confidence 4
No 301
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=49.52 E-value=68 Score=22.91 Aligned_cols=58 Identities=14% Similarity=0.200 Sum_probs=23.4
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcC
Q 048364 242 MQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAG 301 (400)
Q Consensus 242 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 301 (400)
+.+.|.+++..- ..++..+...+..-.|.++++.+.++ +...+..|...-+..+...|
T Consensus 13 l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCC
Confidence 334444444332 22333333334444455555555432 22333333333344444444
No 302
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=49.51 E-value=39 Score=24.94 Aligned_cols=58 Identities=17% Similarity=0.127 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhCcccch-hhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHH
Q 048364 33 TVIHHLHSHILKLGFISHV-YVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKG 90 (400)
Q Consensus 33 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~ 90 (400)
+...++|..|...|+-... ..|......+ ..|++.+|.++|+...+........|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~ 136 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQ 136 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 4477899999999886544 4577777777 99999999999998876555444444443
No 303
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=49.05 E-value=28 Score=22.95 Aligned_cols=39 Identities=15% Similarity=-0.032 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHH
Q 048364 199 GFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALS 237 (400)
Q Consensus 199 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 237 (400)
...+.|.++++.+....+.+|..++.++...|+..-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 467889999999988888999999999887777665543
No 304
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=48.86 E-value=25 Score=20.69 Aligned_cols=45 Identities=18% Similarity=0.124 Sum_probs=27.7
Q ss_pred HHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHhccccccccC
Q 048364 344 QALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLMLNQNVRKARG 391 (400)
Q Consensus 344 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 391 (400)
.+.+.. |..+..+...+ .-...|+.+.|+..+-.|...+..|+.+
T Consensus 15 ~L~emF-P~ld~~~I~~v--L~a~~gdvd~aI~~LL~m~~~~~~~~~~ 59 (59)
T 1wgl_A 15 AIQDMF-PNMDQEVIRSV--LEAQRGNKDAAINSLLQMGEEPSGPSSG 59 (59)
T ss_dssp HHHHHC-SSSCHHHHHHH--HTTTTTCHHHHHHHHHHSSCCCCSCCCC
T ss_pred HHHHHC-CCCCHHHHHHH--HHHcCCCHHHHHHHHHcCcCCCCCCCCC
Confidence 333334 64444333333 2345688999999888888877777653
No 305
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=48.74 E-value=1.5e+02 Score=29.31 Aligned_cols=121 Identities=8% Similarity=-0.036 Sum_probs=72.4
Q ss_pred HHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHH------HHHHHHHhhc
Q 048364 87 MIKGYSKSGNVCEARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMT------IGAVLSGCSH 160 (400)
Q Consensus 87 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~------~~~ll~~~~~ 160 (400)
++..+...|..+-|.++..-+.. ++..--.+..+|...|++++|...|++. ..|+.++... ...++...
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kA--A~gl~~~~~~~~~~~~~~~ll~~~-- 890 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTT--SLVLYSHTSQFAVLREFQEIAEKY-- 890 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTC--CCTTCSSCCSCGGGHHHHHHHHHT--
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHH--hhhcccCcccccchhhhhhccCcc--
Confidence 55666777888877776666554 4444346788999999999999999887 3455433211 11111100
Q ss_pred ccchhhhhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC----CCc----ccHHHHHHHHHhCC
Q 048364 161 LGSVGLLMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALMVFELMEE----RNV----ISWTALICGSAHRG 230 (400)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~l~~~~~~~~ 230 (400)
+ .......-|.-++..+-+.+.++.+.++-+...+ .|. ..|+.+..+.+..|
T Consensus 891 ----e--------------~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 891 ----H--------------HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp ----T--------------TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ----c--------------ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0 0011233567788888888888888776655442 222 24666666655443
No 306
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=46.84 E-value=51 Score=23.24 Aligned_cols=60 Identities=8% Similarity=0.086 Sum_probs=37.8
Q ss_pred HHHHhCCCCCCchhHHHHHHHhcccc-hhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCC
Q 048364 5 SQMHRQSVPSDSFSILHILKSCTHFN-NLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTS 65 (400)
Q Consensus 5 ~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~ 65 (400)
+.|++.|++++..-.. ++..+...+ ..-.|.++++.+.+.++..+..|.-..+..+ ..|-
T Consensus 7 ~~l~~~g~r~T~qR~~-Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 7 SELRKAGLKVTLPRVK-ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHHTTCCCCHHHHH-HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHCCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 4567788877665543 445555555 6778999999998887665555443444444 5554
No 307
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=46.36 E-value=30 Score=20.34 Aligned_cols=29 Identities=14% Similarity=0.236 Sum_probs=16.7
Q ss_pred hhHHHHHHHhhhhcCCCCChhhHHHHHHHH
Q 048364 268 DEGRKYFKMIDEEYDLEPRIQHYGCMVDLF 297 (400)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (400)
++|++.|.+|+++.++.|+- +|...++..
T Consensus 3 eEae~aF~~lL~~~~V~s~w-sweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTW-SFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSC-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCC-cHHHHHHHh
Confidence 55666666666665555443 455555554
No 308
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=46.05 E-value=46 Score=24.45 Aligned_cols=15 Identities=13% Similarity=0.124 Sum_probs=7.0
Q ss_pred HhCCHHHHHHHHhhC
Q 048364 62 VVTSFGFARKLFDEL 76 (400)
Q Consensus 62 ~~g~~~~a~~~~~~~ 76 (400)
..++.-.|.++++.+
T Consensus 44 ~~~~h~sA~eI~~~l 58 (162)
T 4ets_A 44 HSDTHYTPESLYMEI 58 (162)
T ss_dssp SCCSCBCHHHHHHHH
T ss_pred hCCCCCCHHHHHHHH
Confidence 334444455555444
No 309
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=43.79 E-value=36 Score=22.41 Aligned_cols=36 Identities=22% Similarity=0.200 Sum_probs=22.8
Q ss_pred CHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChHHH
Q 048364 65 SFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEA 100 (400)
Q Consensus 65 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 100 (400)
..+.|.++++.++.+....|..++.++...|+..-|
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 466666666666666666666666666655554443
No 310
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=43.36 E-value=1.3e+02 Score=24.25 Aligned_cols=13 Identities=0% Similarity=0.025 Sum_probs=5.3
Q ss_pred hcCCHHHHHHHHH
Q 048364 197 KCGFLKYALMVFE 209 (400)
Q Consensus 197 ~~g~~~~A~~~~~ 209 (400)
..|+.+-+..+++
T Consensus 40 ~~g~~~~v~~Ll~ 52 (285)
T 3kea_A 40 ADNNVRLVCTLLN 52 (285)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHh
Confidence 3444444444433
No 311
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=42.23 E-value=1.1e+02 Score=23.36 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=38.3
Q ss_pred cCChhhHHHHHHHhhhhcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHhc---cCCc
Q 048364 264 TGLVDEGRKYFKMIDEEYDLEPR-IQHYGCMVDLFGKAGFLEEAYEVIRTM---RLEP 317 (400)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~p 317 (400)
.++..++..+|..|..+ |+--. ...|......+...|++.+|.++|+.. +-.|
T Consensus 92 ~~~~~~p~~if~~L~~~-~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNK-GIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHH-TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34466888888888854 55443 455777788888889999999888876 4455
No 312
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=41.30 E-value=95 Score=22.72 Aligned_cols=45 Identities=13% Similarity=0.052 Sum_probs=20.0
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcC
Q 048364 221 ALICGSAHRGYSEDALSLFEMMQAT--GVKPNEMTFTGVLTACVHTG 265 (400)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~ 265 (400)
.++..+...+.+-.|.++++.+.+. +...+..|.---+..+.+.|
T Consensus 37 ~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 37 VLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 3334444444444455555555444 33334444444444444444
No 313
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=40.70 E-value=2.3e+02 Score=26.34 Aligned_cols=307 Identities=12% Similarity=0.051 Sum_probs=150.6
Q ss_pred hhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChHHHHHHHhhCC---CCChhhHHHHHHHHHhcCCc
Q 048364 53 VATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP---LRNVASWSAMIAAYLNAGAY 128 (400)
Q Consensus 53 ~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~ 128 (400)
.-+..+..+ +.+++......+.. ...+...-.....+....|+..+|......+- .........++..+.+.|..
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCC
Confidence 344555666 78889988887776 44455555556777778888766666544431 22455666777777776655
Q ss_pred chH--HHHHHHHHhcCC-----------CCCCHHHH-HHHHHHhhcccchhhhhhhhhhhHHHhccccchH---HHHHHH
Q 048364 129 DPG--LKLFREMISNEG-----------LTPDQMTI-GAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE---QIATIL 191 (400)
Q Consensus 129 ~~a--~~~~~~m~~~~~-----------~~p~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l 191 (400)
... ..=++.+. ..+ +.++.... ..++....+-..+. ..... ..++. ..+...
T Consensus 153 t~~~~~~R~~~al-~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~--------~~~~~--~~~~~~~~~~~~~~ 221 (618)
T 1qsa_A 153 DPLAYLERIRLAM-KAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVL--------TFART--TGATDFTRQMAAVA 221 (618)
T ss_dssp CHHHHHHHHHHHH-HTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHH--------HHHHH--SCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHH--------HHHhc--cCCChhhHHHHHHH
Confidence 442 22222222 111 12222111 11111111111110 00000 01111 111112
Q ss_pred HHHHHhcCCHHHHHHHHHhccCC---Ccc----cHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048364 192 VDMYAKCGFLKYALMVFELMEER---NVI----SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHT 264 (400)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~~---~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 264 (400)
+.-+.+ .+.+.|...+....+. +.. .+..+...+...+...++...+....... ++.....-.+....+.
T Consensus 222 ~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~ 298 (618)
T 1qsa_A 222 FASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGT 298 (618)
T ss_dssp HHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHH
T ss_pred HHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHC
Confidence 222233 3667787777666431 111 22223333334443445566666544432 2333333344444566
Q ss_pred CChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhc---------------cCC---------c---
Q 048364 265 GLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM---------------RLE---------P--- 317 (400)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---------------~~~---------p--- 317 (400)
|+++.|...|+.|... ........-=+.+++...|+.++|..+|+.+ |.. +
T Consensus 299 ~d~~~a~~~~~~l~~~--~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~ 376 (618)
T 1qsa_A 299 GDRRGLNTWLARLPME--AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVD 376 (618)
T ss_dssp TCHHHHHHHHHHSCTT--GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCC
T ss_pred CCHHHHHHHHHHcccc--ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHH
Confidence 8888888888777632 1112222333566677778888888777765 110 0
Q ss_pred cHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHH
Q 048364 318 NVI---IWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKL 380 (400)
Q Consensus 318 ~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 380 (400)
... .-..-+..+...|....|...+..+.+.. +..-...+.......|.++.++.....
T Consensus 377 ~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~----~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 377 SALTQGPEMARVRELMYWNLDNTARSEWANLVKSK----SKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp CHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC----CHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 000 11122345667788888887777776543 223334455555566666666554443
No 314
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=40.36 E-value=40 Score=26.29 Aligned_cols=82 Identities=17% Similarity=0.218 Sum_probs=62.3
Q ss_pred ChHHHHHHHHhcc-----CCc-----cHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHcCCCCCCchHHHHHH
Q 048364 302 FLEEAYEVIRTMR-----LEP-----NVIIWGSFLAACKEHK---------QFDMAERVIKQALRMVKPENDGGVFTLIC 362 (400)
Q Consensus 302 ~~~~a~~~~~~~~-----~~p-----~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 362 (400)
..+.|..++.+|| +-| ...-|..+..+|.+.| +.+....+++..++.|+++.-+..|..++
T Consensus 146 ~vetAiaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~~viPHIYssII 225 (249)
T 3m0z_A 146 PLETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSII 225 (249)
T ss_dssp EHHHHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCSCBCCBCCGGGB
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCCeecccccceec
Confidence 3678888999983 112 4556888999999887 56777888888999898767778888888
Q ss_pred HHhhcccchHHHHHHHHHHhc
Q 048364 363 DLYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 363 ~~~~~~g~~~~a~~~~~~m~~ 383 (400)
+--.-.-+.++..+++..+.+
T Consensus 226 Dk~TG~TrpedV~~ll~~~K~ 246 (249)
T 3m0z_A 226 DKASGNTRPADVRQLLEMTKQ 246 (249)
T ss_dssp CTTTCCBCHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHH
Confidence 766666678888888877654
No 315
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=40.05 E-value=1.4e+02 Score=24.97 Aligned_cols=14 Identities=14% Similarity=-0.028 Sum_probs=5.8
Q ss_pred HhCCHHHHHHHHhh
Q 048364 62 VVTSFGFARKLFDE 75 (400)
Q Consensus 62 ~~g~~~~a~~~~~~ 75 (400)
..|..+-+..+++.
T Consensus 62 ~~g~~~~v~~Ll~~ 75 (364)
T 3ljn_A 62 KFGCVDTAKYLASV 75 (364)
T ss_dssp HHCCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHC
Confidence 44444444444333
No 316
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=39.69 E-value=64 Score=25.21 Aligned_cols=59 Identities=10% Similarity=0.042 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhCcccc-hhhhhHHHHHH-HhCCHHHHHHHHhhCCCCChhhHHHHHHHH
Q 048364 33 TVIHHLHSHILKLGFISH-VYVATSLLHEY-VVTSFGFARKLFDELPERNAVTWNTMIKGY 91 (400)
Q Consensus 33 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 91 (400)
+...++|..|...|+-.. ...|......+ ..|++.+|..+|+...+........|...+
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~ 191 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKY 191 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 577799999999988654 44677777777 999999999999988876555555555444
No 317
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=39.62 E-value=1.7e+02 Score=24.46 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=30.8
Q ss_pred cCCccHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048364 314 RLEPNVI--IWGSFLAACKEHKQFDMAERVIKQALRMVKP 351 (400)
Q Consensus 314 ~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 351 (400)
++.|... +....+....+.+++..|..+.+++++.+ |
T Consensus 200 ~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~-p 238 (325)
T 3mv2_A 200 KLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKII-S 238 (325)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-C
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-C
Confidence 6666443 56777888899999999999999999998 6
No 318
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=39.32 E-value=1.2e+02 Score=22.70 Aligned_cols=89 Identities=11% Similarity=0.013 Sum_probs=56.0
Q ss_pred cchhhhhHHHHHH--HhCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCChHHHHHHHhhCC------CC----------
Q 048364 49 SHVYVATSLLHEY--VVTSFGFARKLFDELPERNAVTWNTMIKGYSKSGNVCEARDFFERMP------LR---------- 110 (400)
Q Consensus 49 ~~~~~~~~l~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------~~---------- 110 (400)
|+..-|..++... -.|.+..++-++...-.-+..-|..+ +|-+..++..|+..++.+. .|
T Consensus 30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~~lNT~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ff 107 (242)
T 3kae_A 30 PCKPEYRMLMSIVLYLNGEYTRALFHLHKLNTCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMF 107 (242)
T ss_dssp ----CTHHHHHHHHHHTTCHHHHHHHHHTCCBHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTS
T ss_pred cCChHHHhhhhhhhhhcchHhHHHHHHHhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceee
Confidence 4444566666654 77888887777765543333333332 3556778888887776653 12
Q ss_pred ----C-hhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 048364 111 ----N-VASWSAMIAAYLNAGAYDPGLKLFREMI 139 (400)
Q Consensus 111 ----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 139 (400)
| ...|+.+...+.+.|+.++|+..|..--
T Consensus 108 vd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 108 VDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp CCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred eccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 1 2357778888889999999999887654
No 319
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=39.28 E-value=1.3e+02 Score=23.09 Aligned_cols=86 Identities=16% Similarity=0.069 Sum_probs=51.1
Q ss_pred HHHhcccchhHHHHHHHHHHHHhCcccch---hhhhHHHHHHHhCCHHHHHHHHhhCCCCChhh--HHHHHHHHHcCCCh
Q 048364 23 LKSCTHFNNLTVIHHLHSHILKLGFISHV---YVATSLLHEYVVTSFGFARKLFDELPERNAVT--WNTMIKGYSKSGNV 97 (400)
Q Consensus 23 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~~~~ 97 (400)
+...+..|+.+.+..+++.+.+.|..++. .-.+.+..+...|+.+-+..+++.-..++... -.+.+...+..|+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 92 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSP 92 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCH
Confidence 33445668888888888877777755443 23444444448888887777777654432211 11233444567777
Q ss_pred HHHHHHHhhCC
Q 048364 98 CEARDFFERMP 108 (400)
Q Consensus 98 ~~a~~~~~~~~ 108 (400)
+-+..+++...
T Consensus 93 ~~~~~Ll~~~~ 103 (241)
T 1k1a_A 93 TCLRALLDSAA 103 (241)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHcCC
Confidence 77766666543
No 320
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=39.25 E-value=1.1e+02 Score=23.27 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=15.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC
Q 048364 326 LAACKEHKQFDMAERVIKQALRMV 349 (400)
Q Consensus 326 ~~~~~~~~~~~~a~~~~~~~~~~~ 349 (400)
+..|.+.|.+++|.+++++.....
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~ 147 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDP 147 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC---
T ss_pred HHHHHHccchHHHHHHHHHHhcCC
Confidence 345777888888888888766655
No 321
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=37.56 E-value=40 Score=26.59 Aligned_cols=81 Identities=21% Similarity=0.233 Sum_probs=61.9
Q ss_pred hHHHHHHHHhcc-----CCc-----cHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 048364 303 LEEAYEVIRTMR-----LEP-----NVIIWGSFLAACKEHK---------QFDMAERVIKQALRMVKPENDGGVFTLICD 363 (400)
Q Consensus 303 ~~~a~~~~~~~~-----~~p-----~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 363 (400)
.+.|..++.+|| +-| ...-|..+..+|.+.| +.+....+++..++.|+++.-+..|..+++
T Consensus 170 vetAiaml~dmG~~SvKffPM~Gl~~leEl~avAkAca~~g~~lEPTGGIdl~Nf~~I~~i~l~aGv~~viPHIYsSIID 249 (275)
T 3m6y_A 170 IKTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALEANVEQVIPHVYSSIID 249 (275)
T ss_dssp HHHHHHHHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHHHTCEEEEBSSCCTTTHHHHHHHHHHTTCSCBCCEECGGGBC
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhHHHHHHHHHHHcCCCeecccccceecc
Confidence 577888888883 112 4556888999999887 567778889999999987677888888887
Q ss_pred HhhcccchHHHHHHHHHHhc
Q 048364 364 LYTMNEKWEGAERVRKLMLN 383 (400)
Q Consensus 364 ~~~~~g~~~~a~~~~~~m~~ 383 (400)
--.-.-+.++..+++..+.+
T Consensus 250 k~TG~TrpedV~~ll~~~K~ 269 (275)
T 3m6y_A 250 KETGNTKVEAVRELLAVVKK 269 (275)
T ss_dssp TTTCCBCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 66666678888888777654
No 322
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=36.79 E-value=1.4e+02 Score=22.80 Aligned_cols=21 Identities=19% Similarity=0.521 Sum_probs=13.1
Q ss_pred HHHHHhcCCcchHHHHHHHHH
Q 048364 119 IAAYLNAGAYDPGLKLFREMI 139 (400)
Q Consensus 119 ~~~~~~~g~~~~a~~~~~~m~ 139 (400)
+..|.+.|.+++|.+++++..
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHccchHHHHHHHHHHh
Confidence 345666666666666666643
No 323
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=36.54 E-value=1.3e+02 Score=22.39 Aligned_cols=13 Identities=8% Similarity=0.112 Sum_probs=7.2
Q ss_pred HHHHHHHHHCCCC
Q 048364 236 LSLFEMMQATGVK 248 (400)
Q Consensus 236 ~~~~~~m~~~~~~ 248 (400)
..+-.++...|+.
T Consensus 87 ~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 87 KVIKLNLSKKGID 99 (177)
T ss_dssp HHHHHHHHTTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 4455556666654
No 324
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=35.62 E-value=1.1e+02 Score=25.64 Aligned_cols=147 Identities=11% Similarity=0.037 Sum_probs=65.7
Q ss_pred hhHHHHHH-HhCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHcCC-ChHHHHHHHhhCCCCChhhHHHHHHHHHhcCCc
Q 048364 54 ATSLLHEY-VVTSFGFARKLFDELPERNA---VTWNTMIKGYSKSG-NVCEARDFFERMPLRNVASWSAMIAAYLNAGAY 128 (400)
Q Consensus 54 ~~~l~~~~-~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 128 (400)
...++.-| ..|+.++|...++++..|.- .+...+..++-+.. ..+.+..++..+...+..+-..+..++.+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~---- 89 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYE---- 89 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH----
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH----
Confidence 34566777 78888888888888876531 12222222222211 12333444444444444444444444322
Q ss_pred chHHHHHHHHHhcCCCCCCHHHHHH-HHHHhhcccchhh-hhhhhhhhHHHhccccchHHHHHHHHHHHHhcCCHHHHHH
Q 048364 129 DPGLKLFREMISNEGLTPDQMTIGA-VLSGCSHLGSVGL-LMGKSAHGFIVKNEWELNEQIATILVDMYAKCGFLKYALM 206 (400)
Q Consensus 129 ~~a~~~~~~m~~~~~~~p~~~~~~~-ll~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 206 (400)
..+.++.+. --.|....+-. ++..+...|-... .+...+.+.+.+.| ........++..+.+....+.+.+
T Consensus 90 --~~~~l~Dl~---lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g--~~~~fl~~vl~~l~~~~g~~~l~~ 162 (339)
T 1ug3_A 90 --ILELAEDME---IDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLG--KAASLLLEILGLLCKSMGPKKVGT 162 (339)
T ss_dssp --HHHHHHHHT---TTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHT--CHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred --HHhhChHhh---cCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHHHcCHHHHHH
Confidence 233333332 12455444433 3333333333221 00111222222233 223344455566666666666666
Q ss_pred HHHhc
Q 048364 207 VFELM 211 (400)
Q Consensus 207 ~~~~~ 211 (400)
+|.+.
T Consensus 163 ~~~~s 167 (339)
T 1ug3_A 163 LWREA 167 (339)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 66643
No 325
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=35.57 E-value=1.2e+02 Score=21.61 Aligned_cols=64 Identities=14% Similarity=0.084 Sum_probs=33.5
Q ss_pred HHHHHhhCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccch
Q 048364 100 ARDFFERMPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV 164 (400)
Q Consensus 100 a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~ 164 (400)
+.+.++...-+-...-..++..+...+..-.|.++++.+. ..+...+..|....|..+...|-+
T Consensus 9 ~~~~l~~~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~-~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 9 ALETLKETGVRITPQRHAILEYLVNSMAHPTADDIYKALE-GKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHG-GGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHH-HhCCCCChhhHHHHHHHHHHCCCE
Confidence 3333433322333334445555555566666777777765 444445555655555655555543
No 326
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=35.54 E-value=1.2e+02 Score=21.73 Aligned_cols=42 Identities=5% Similarity=-0.046 Sum_probs=17.5
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048364 224 CGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG 265 (400)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 265 (400)
..+...+.+-.|.++++.+.+.+...+..|.--.+..+.+.|
T Consensus 34 ~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 34 SVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 333333334444444444444433334444333444444433
No 327
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=35.31 E-value=74 Score=19.14 Aligned_cols=51 Identities=4% Similarity=-0.124 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHH
Q 048364 321 IWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEG 373 (400)
Q Consensus 321 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 373 (400)
.++-++..++...-.++++..++++.+.| . .+..+|.--++..++..-+..
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~-I~l~~ylK~vR~LaReQF~~R 54 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-T-IPLDTFVKQGRELARQQFLVR 54 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-S-SCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHHHHHHH
Confidence 45667777877778899999999999998 5 578888887777776554433
No 328
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=35.07 E-value=49 Score=27.93 Aligned_cols=74 Identities=9% Similarity=0.134 Sum_probs=49.7
Q ss_pred HHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCC-Ch----hhHH--HHHHH----HHcCCChHHHHHHH
Q 048364 37 HLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPER-NA----VTWN--TMIKG----YSKSGNVCEARDFF 104 (400)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~-~~----~~~~--~l~~~----~~~~~~~~~a~~~~ 104 (400)
++++.+.+.|+.|..+++.=++..+ +.=.++.+..+++.+... +. ..|- +++.. .....++++...++
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L 309 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFL 309 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 5667777788888777777666666 666788899998888742 21 1121 22221 23467888999999
Q ss_pred hhCCCC
Q 048364 105 ERMPLR 110 (400)
Q Consensus 105 ~~~~~~ 110 (400)
+.++..
T Consensus 310 ~~~p~~ 315 (345)
T 2qfz_A 310 QNLPTA 315 (345)
T ss_dssp TSCSCT
T ss_pred HcCCCc
Confidence 888755
No 329
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=34.83 E-value=1.7e+02 Score=23.25 Aligned_cols=184 Identities=7% Similarity=-0.095 Sum_probs=82.5
Q ss_pred CCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchhhhhhhhhhhHHHh-ccccchH
Q 048364 107 MPLRNVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVGLLMGKSAHGFIVK-NEWELNE 185 (400)
Q Consensus 107 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~ 185 (400)
+..+|...-...+.++.+.|. +.+...+..+. . .++...-...+.++.+.+..... ...+...+.+ ..-.++.
T Consensus 32 L~~~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l-~---d~~~~vR~~A~~aL~~l~~~~~~-~~~l~~~L~~~~~~d~~~ 105 (280)
T 1oyz_A 32 LDDHNSLKRISSARVLQLRGG-QDAVRLAIEFC-S---DKNYIRRDIGAFILGQIKICKKC-EDNVFNILNNMALNDKSA 105 (280)
T ss_dssp TTCSSHHHHHHHHHHHHHHCC-HHHHHHHHHHH-T---CSSHHHHHHHHHHHHHSCCCTTT-HHHHHHHHHHHHHHCSCH
T ss_pred HHcCCHHHHHHHHHHHHccCC-chHHHHHHHHH-c---CCCHHHHHHHHHHHHHhcccccc-chHHHHHHHHHHhcCCCH
Confidence 344555554455555666553 44555555555 2 34544444455555555532220 1112222211 0112344
Q ss_pred HHHHHHHHHHHhcCC-----HHHHHHHHHh-ccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048364 186 QIATILVDMYAKCGF-----LKYALMVFEL-MEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLT 259 (400)
Q Consensus 186 ~~~~~l~~~~~~~g~-----~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 259 (400)
.+-...+.++...+. ...+...+.. +..++...-...+.++...|+.+ +...+.++.. .++...-...+.
T Consensus 106 ~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 181 (280)
T 1oyz_A 106 CVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAAF 181 (280)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 444445555554431 2233333333 34456555556666666666533 4444444443 245544455555
Q ss_pred HHHhcC-ChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChH
Q 048364 260 ACVHTG-LVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLE 304 (400)
Q Consensus 260 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 304 (400)
++...+ ....+...+..+.+ .++..+-...+.++.+.|+..
T Consensus 182 aL~~~~~~~~~~~~~L~~~l~----d~~~~vR~~A~~aL~~~~~~~ 223 (280)
T 1oyz_A 182 AININKYDNSDIRDCFVEMLQ----DKNEEVRIEAIIGLSYRKDKR 223 (280)
T ss_dssp HHHHHTCCCHHHHHHHHHHTT----CSCHHHHHHHHHHHHHTTCGG
T ss_pred HHHhhccCcHHHHHHHHHHhc----CCCHHHHHHHHHHHHHhCCHh
Confidence 555544 12334444433332 244445555556666666543
No 330
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=34.78 E-value=1.5e+02 Score=22.64 Aligned_cols=47 Identities=13% Similarity=0.127 Sum_probs=32.2
Q ss_pred HHHHHHHHH---hCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048364 219 WTALICGSA---HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGL 266 (400)
Q Consensus 219 ~~~l~~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 266 (400)
+.-+|+++. +..+++.|+-.+.+|.+.| .|....-..++.+...-|.
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 334455554 4578899999999999988 7766666666666655553
No 331
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=34.53 E-value=1.5e+02 Score=22.57 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=32.2
Q ss_pred HHHHHHH---hCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048364 221 ALICGSA---HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG 265 (400)
Q Consensus 221 ~l~~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 265 (400)
.+|+++. +..+++.|+-.+.+|++.|..|....-..++.+....|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3455554 45788999999999999988777666666666655544
No 332
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=34.52 E-value=91 Score=25.15 Aligned_cols=150 Identities=11% Similarity=0.055 Sum_probs=76.8
Q ss_pred chhHHHHHHHhcccchhHHHHHHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCCCC---hhhHHHHHHHH
Q 048364 16 SFSILHILKSCTHFNNLTVIHHLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPERN---AVTWNTMIKGY 91 (400)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~ 91 (400)
....+.|..+ +..|+.+.+ +.+++.|..++...-...+... ..|+.+-+..+++.-..++ ..-++ .+...
T Consensus 29 ~~g~t~L~~A-~~~g~~~~v----~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t-~L~~A 102 (285)
T 3kea_A 29 VHGHSASYYA-IADNNVRLV----CTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNT-ALYYA 102 (285)
T ss_dssp TTSCCHHHHH-HHTTCHHHH----HHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCC-HHHHH
T ss_pred CCCCCHHHHH-HHcCCHHHH----HHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCc-HHHHH
Confidence 3334444443 455666544 4445666655543333344444 8888888888887655432 22222 33445
Q ss_pred HcCCChHHHHHHHhhCCCC---ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCC-CHHHHHHHHHHhhcccchhhh
Q 048364 92 SKSGNVCEARDFFERMPLR---NVASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTP-DQMTIGAVLSGCSHLGSVGLL 167 (400)
Q Consensus 92 ~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~ 167 (400)
+..|+.+-+.-+++.-..+ +..-+.+.+...+..|+.+- .+.+. ..|..+ +...-.+.+...+..|..+-
T Consensus 103 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~----v~~Ll-~~g~~~~~~~~g~t~L~~A~~~g~~~~- 176 (285)
T 3kea_A 103 VDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSI----VSYFL-SEIPSTFDLAILLSCIHITIKNGHVDM- 176 (285)
T ss_dssp HHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHH----HHHHH-TTSCTTCCCSTHHHHHHHHHHTTCHHH-
T ss_pred HHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHH----HHHHH-hCCCccccccCCccHHHHHHHcChHHH-
Confidence 6678877777777663322 22232233444455565443 33333 333333 22122334455556677776
Q ss_pred hhhhhhhHHHh
Q 048364 168 MGKSAHGFIVK 178 (400)
Q Consensus 168 ~a~~~~~~~~~ 178 (400)
+..+++.-..
T Consensus 177 -v~~Ll~~gad 186 (285)
T 3kea_A 177 -MILLLDYMTS 186 (285)
T ss_dssp -HHHHHHHHHH
T ss_pred -HHHHHHcCCC
Confidence 6666665433
No 333
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=34.47 E-value=1.6e+02 Score=22.83 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCCh
Q 048364 232 SEDALSLFEMMQATGVKPNEM-------TFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFL 303 (400)
Q Consensus 232 ~~~a~~~~~~m~~~~~~p~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 303 (400)
.+.|+.+|+.+.+.-..|+.. .--..+..|.+.|.+++|.+++++.. +-.++..-....+....+.++.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~---~~~~s~~kLr~kL~~II~~Kd~ 163 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHM---SKDPTTQKLRNDLLNIIREKNL 163 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTCGGGHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHh---cCCCCchHHHHHHHHHHhccCc
No 334
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=34.37 E-value=95 Score=21.61 Aligned_cols=47 Identities=19% Similarity=0.127 Sum_probs=31.0
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 048364 221 ALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267 (400)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 267 (400)
.++..+...+..-.|.++++.+.+.+...+..|..-.+..+.+.|-.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 34455555666677788888887776666666666666667666643
No 335
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=34.22 E-value=1.4e+02 Score=21.94 Aligned_cols=58 Identities=12% Similarity=0.066 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc--c-CCc--cHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHHc
Q 048364 290 YGCMVDLFGKAGFLEEAYEVIRTM--R-LEP--NVIIWGSFLA-A-----CKEHKQFDMAERVIKQALRM 348 (400)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~--~-~~p--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~~ 348 (400)
|..-+.. ...|++-+|-+++++. . -.| +...|..||+ . ..+.|+...|..++.+....
T Consensus 36 ~~~~i~l-Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRL-YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHH-HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3333333 3459999999999998 2 234 5567777777 3 24689999999999999874
No 336
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=34.09 E-value=87 Score=22.16 Aligned_cols=47 Identities=19% Similarity=0.142 Sum_probs=30.1
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 048364 221 ALICGSAHRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLV 267 (400)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 267 (400)
.++..+...+..-.|.++++.+.+.+...+..|.--.+..+.+.|-.
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34455555555666777777777776666666666666666666643
No 337
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=33.96 E-value=34 Score=23.60 Aligned_cols=48 Identities=13% Similarity=0.052 Sum_probs=24.5
Q ss_pred hhHHHHHH-HHHHHHhCcccchhh-hhHHHHHHHhCCHHHHHHHHhhCCC
Q 048364 31 NLTVIHHL-HSHILKLGFISHVYV-ATSLLHEYVVTSFGFARKLFDELPE 78 (400)
Q Consensus 31 ~~~~a~~~-~~~~~~~~~~~~~~~-~~~l~~~~~~g~~~~a~~~~~~~~~ 78 (400)
+.++-+.+ |+.+....+.|++.. ...+..++..++++.|..+.-.+..
T Consensus 40 D~~KRL~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 40 DISRRLALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333333 333333345444332 2223333378888888888777654
No 338
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=33.83 E-value=97 Score=25.59 Aligned_cols=68 Identities=22% Similarity=0.324 Sum_probs=38.5
Q ss_pred HHHHHHHHhCcccchhhhhHHHHHH-HhCCHHHHHHHHhhCCC--CChhhHHH--HHH----HHHcCCChHHHHHHHh
Q 048364 37 HLHSHILKLGFISHVYVATSLLHEY-VVTSFGFARKLFDELPE--RNAVTWNT--MIK----GYSKSGNVCEARDFFE 105 (400)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~a~~~~~~~~~--~~~~~~~~--l~~----~~~~~~~~~~a~~~~~ 105 (400)
+++..+.+.|+.|...++.=++..+ ..=.++.+..+++.+.. +....+-+ ++. ...+ .++++..++|.
T Consensus 175 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~l~~v~lail~~~~~~Ll~-~d~~~~l~~l~ 251 (310)
T 3hzj_A 175 DLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQ-ADFEGALKFFR 251 (310)
T ss_dssp HHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHT-CCHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 4566666677777776666666666 55567777777776652 22211111 111 1222 37788888875
No 339
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=33.22 E-value=2.6e+02 Score=24.84 Aligned_cols=34 Identities=12% Similarity=-0.069 Sum_probs=17.4
Q ss_pred cccchHHHHHHHHHHHHhcCCHHHHHHHHHhccC
Q 048364 180 EWELNEQIATILVDMYAKCGFLKYALMVFELMEE 213 (400)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 213 (400)
|++--...|..-.+.+...|++++|.++--..+.
T Consensus 356 ~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~ 389 (494)
T 1bpo_A 356 NLAGAEELFARKFNALFAQGNYSEAAKVAANAPK 389 (494)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc
Confidence 3333333444444555566666666665544443
No 340
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=32.09 E-value=25 Score=20.69 Aligned_cols=24 Identities=8% Similarity=0.131 Sum_probs=18.0
Q ss_pred cCCcchHHHHHHHHHhcCCCCCCH
Q 048364 125 AGAYDPGLKLFREMISNEGLTPDQ 148 (400)
Q Consensus 125 ~g~~~~a~~~~~~m~~~~~~~p~~ 148 (400)
.-+++.|+..|.++.....++|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 457889999999987555666653
No 341
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=32.08 E-value=1.2e+02 Score=25.04 Aligned_cols=64 Identities=16% Similarity=0.177 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCCc---ccHHHHHHHHHhCCC--hhhHHHHHHHHHHCCCCCCH
Q 048364 188 ATILVDMYAKCGFLKYALMVFELMEERNV---ISWTALICGSAHRGY--SEDALSLFEMMQATGVKPNE 251 (400)
Q Consensus 188 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~ 251 (400)
...++.-|...|+.++|.+.++++..|.- .....+..++-+.++ .+.+..++..+...|+-+..
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 35677888888999999999999887622 233344444444332 34566777777766655433
No 342
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.02 E-value=2.2e+02 Score=24.56 Aligned_cols=57 Identities=12% Similarity=0.151 Sum_probs=35.3
Q ss_pred HHHHHHhcCChhhHHHHHHHhhhhc----C-----------CCCChhhHHHHHHHHHhcCChHHHHHHHHhc
Q 048364 257 VLTACVHTGLVDEGRKYFKMIDEEY----D-----------LEPRIQHYGCMVDLFGKAGFLEEAYEVIRTM 313 (400)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~----~-----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (400)
++.+.....+.+++.++++.+.... . ..+.......+.+.|...|+.++|..++++.
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~ 153 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDL 153 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4556667778888888888764311 0 0111233445566777788888887777766
No 343
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=31.75 E-value=1.9e+02 Score=22.75 Aligned_cols=46 Identities=7% Similarity=-0.086 Sum_probs=23.9
Q ss_pred HhCCHHHHHHHHhhCCCCChh---hHHHHHHHHHcCCChHHHHHHHhhC
Q 048364 62 VVTSFGFARKLFDELPERNAV---TWNTMIKGYSKSGNVCEARDFFERM 107 (400)
Q Consensus 62 ~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~ 107 (400)
+.|+.+....+++.-...+.. .-.+.+...+..|+.+-+..+++.-
T Consensus 14 ~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 62 (285)
T 1wdy_A 14 QNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62 (285)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 566666666666554432211 1123444555667776666666553
No 344
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=31.68 E-value=1.8e+02 Score=22.47 Aligned_cols=49 Identities=18% Similarity=0.229 Sum_probs=35.0
Q ss_pred ccHHHHHHHHH---hCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048364 217 ISWTALICGSA---HRGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG 265 (400)
Q Consensus 217 ~~~~~l~~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 265 (400)
..+.-+|+++. +..+++.|+-.+.+|++.|..|....-..++.+...-|
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34445566664 45889999999999999998887776666666665544
No 345
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=31.25 E-value=83 Score=23.38 Aligned_cols=75 Identities=9% Similarity=-0.026 Sum_probs=38.1
Q ss_pred cccchhHHHHHHHHHHHHhCc-cc---chhhhhHHHHHHHhCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHcCCChHH
Q 048364 27 THFNNLTVIHHLHSHILKLGF-IS---HVYVATSLLHEYVVTSFGFARKLFDELPERN---AVTWNTMIKGYSKSGNVCE 99 (400)
Q Consensus 27 ~~~g~~~~a~~~~~~~~~~~~-~~---~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~ 99 (400)
+..|+.+....++. .+. .+ +..-.+.+..++..|+.+-+..+++.-..++ ....+ .+...+..|+.+-
T Consensus 13 ~~~g~~~~v~~ll~----~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~~~~ 87 (201)
T 3hra_A 13 ANQRDTKKVKEILQ----DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDS-PYLYAGAQGRTEI 87 (201)
T ss_dssp HHTTCHHHHHHHHT----CTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHH
T ss_pred HHhccHHHHHHHHH----cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC-HHHHHHHcCCHHH
Confidence 34556655555543 221 22 2233444444447777777777776654432 21222 2334455677766
Q ss_pred HHHHHhh
Q 048364 100 ARDFFER 106 (400)
Q Consensus 100 a~~~~~~ 106 (400)
+..+++.
T Consensus 88 ~~~Ll~~ 94 (201)
T 3hra_A 88 LAYMLKH 94 (201)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6666644
No 346
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=30.94 E-value=1.3e+02 Score=25.97 Aligned_cols=44 Identities=9% Similarity=0.079 Sum_probs=29.1
Q ss_pred hhHHHHhCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHHhC
Q 048364 3 LFSQMHRQSVPSDSFSILHILKSCTHFNNLTVIHHLHSHILKLG 46 (400)
Q Consensus 3 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 46 (400)
+++.+.+.|+.|...++.-++..+++.=.++.+.++|+.+...|
T Consensus 218 L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg 261 (396)
T 1fkm_A 218 LYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSET 261 (396)
T ss_dssp HHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHCC
Confidence 45555666777766666666666666666677777777766655
No 347
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=30.26 E-value=1.5e+02 Score=22.71 Aligned_cols=14 Identities=7% Similarity=-0.019 Sum_probs=5.9
Q ss_pred HhcCChHHHHHHHH
Q 048364 298 GKAGFLEEAYEVIR 311 (400)
Q Consensus 298 ~~~g~~~~a~~~~~ 311 (400)
+..|+.+-+..+++
T Consensus 158 ~~~~~~~~v~~Ll~ 171 (241)
T 1k1a_A 158 VENNSLSMVQLLLQ 171 (241)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 34455444433333
No 348
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=30.25 E-value=1.4e+02 Score=24.91 Aligned_cols=129 Identities=5% Similarity=-0.011 Sum_probs=69.1
Q ss_pred HhhHHHHhCCCCCCchh---HHHHHHHhcccchhHHHHHHHHHHHHhCcccch-hhhhHHHHHHHhCCHHHHHHHHhhC-
Q 048364 2 QLFSQMHRQSVPSDSFS---ILHILKSCTHFNNLTVIHHLHSHILKLGFISHV-YVATSLLHEYVVTSFGFARKLFDEL- 76 (400)
Q Consensus 2 ~~~~~m~~~g~~p~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~g~~~~a~~~~~~~- 76 (400)
++++.+.+.|..++... .+.| ...+..|+.+ +.+.+++.|..++. .-.+.+..+...|..+-+..+++..
T Consensus 34 ~~v~~Ll~~g~~~~~~d~~g~t~L-~~A~~~g~~~----~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~ 108 (364)
T 3ljn_A 34 DEVRRLIETGVSPTIQNRFGCTAL-HLACKFGCVD----TAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAK 108 (364)
T ss_dssp HHHHHHHHTTCCTTCCCTTCCCHH-HHHHHHCCHH----HHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccccCCCCCcHH-HHHHHcCCHH----HHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhcc
Confidence 46677777877665432 3344 3444556654 45555666765554 3445555555888888888888762
Q ss_pred ---CCCC--------------------hhhHHHHHHHHHcCC--ChHHHHHHHhhCCCC---ChhhHHHHHHHHHhcCCc
Q 048364 77 ---PERN--------------------AVTWNTMIKGYSKSG--NVCEARDFFERMPLR---NVASWSAMIAAYLNAGAY 128 (400)
Q Consensus 77 ---~~~~--------------------~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~ 128 (400)
..++ ..-. +.+...+..| +.+-+..+++.-..+ |..-++.|.. .+..|+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~-A~~~g~~ 186 (364)
T 3ljn_A 109 ERGQMPESLLNECDEREVNEIGSHVKHCKGQ-TALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMR-AMEFRNR 186 (364)
T ss_dssp HHTCCHHHHHTCCCCCCEEEETTEEEEESCC-CHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHH-HHHTTCH
T ss_pred ccCCCHHHHHhhcchHhhhhhccccCCCCCC-CHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHH-HHHcCCH
Confidence 1111 1112 2344455666 666666666653322 3222333333 3455666
Q ss_pred chHHHHHHH
Q 048364 129 DPGLKLFRE 137 (400)
Q Consensus 129 ~~a~~~~~~ 137 (400)
+-+..+++.
T Consensus 187 ~~v~~Ll~~ 195 (364)
T 3ljn_A 187 EALDLMMDT 195 (364)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 555555543
No 349
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=27.93 E-value=99 Score=21.27 Aligned_cols=42 Identities=10% Similarity=-0.054 Sum_probs=25.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhh
Q 048364 238 LFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDE 279 (400)
Q Consensus 238 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (400)
+|+++....+.|+...-..-+..+...++++.|.++.-.+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555555444333344445667788888887777663
No 350
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=27.41 E-value=1.3e+02 Score=19.40 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=24.0
Q ss_pred cCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChh
Q 048364 198 CGFLKYALMVFELMEERNVISWTALICGSAHRGYSE 233 (400)
Q Consensus 198 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 233 (400)
....++|.++++.+......+|..+..++.+.+...
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHH
Confidence 345666777777777767777777777776666443
No 351
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=26.83 E-value=3.4e+02 Score=24.14 Aligned_cols=140 Identities=11% Similarity=-0.050 Sum_probs=73.7
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 048364 229 RGYSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEYDLEPRIQHYGCMVDLFGKAGFLEEAYE 308 (400)
Q Consensus 229 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 308 (400)
..+.+-|.++- .+.|++--...|..-...+...|++++|.++--...+ |+--+..|.+.+-..=..-|+..-.+.
T Consensus 342 l~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~--giLRt~~Ti~rFk~vp~~pgq~splL~ 416 (494)
T 1bpo_A 342 LQNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK--GILRTPDTIRRFQSVPAQPGQTSPLLQ 416 (494)
T ss_dssp TCCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG--GSSCSHHHHHHHTTSCCCTTSCCHHHH
T ss_pred cCCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc--ccccCHHHHHHHhcCCCCCCCCCHHHH
Confidence 46666666553 3445554455676677778888888888887776653 554455555444333333445555555
Q ss_pred HHHhc--cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHHHHHHHHHh
Q 048364 309 VIRTM--RLEPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGAERVRKLML 382 (400)
Q Consensus 309 ~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 382 (400)
+|..+ .-+.+..---.+++.-..+|+.+-.+ +.+..+.. .-.+-.--++ +..+..-|..+|.+..
T Consensus 417 YF~~Ll~~g~Ln~~ESlEl~r~vL~q~r~~lle----kWl~e~KL-~~SEeLGDlv----k~~d~~LAl~IY~~a~ 483 (494)
T 1bpo_A 417 YFGILLDQGQLNKYESLELCRPVLQQGRKQLLE----KWLKEDKL-ECSEELGDLV----KSVDPTLALSVYLRAN 483 (494)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHH----HHHHHTCS-CCCHHHHHHH----HHHCSHHHHHHHHHHC
T ss_pred HHHHHhccCccchHHhhHHhHHHHhccHHHHHH----HHHhcCCc-cccHHhHhhh----hhcCHHHHHHHHHHcC
Confidence 55555 11333333333444445555554433 33333323 2233333333 3446677777776654
No 352
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=26.78 E-value=65 Score=22.82 Aligned_cols=37 Identities=8% Similarity=-0.108 Sum_probs=15.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcc
Q 048364 331 EHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMN 368 (400)
Q Consensus 331 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 368 (400)
..++.-.|.++++.+.+.+ |..+..|...-+..+.+.
T Consensus 25 ~~~~h~sa~eI~~~l~~~~-~~is~aTVYR~L~~L~e~ 61 (139)
T 3mwm_A 25 EVEEFRSAQELHDMLKHKG-DAVGLTTVYRTLQSLADA 61 (139)
T ss_dssp TCSSCEEHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHT
T ss_pred hCCCCCCHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHC
Confidence 3333444444444444444 333444443333443333
No 353
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=26.61 E-value=72 Score=20.25 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=27.1
Q ss_pred cchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchh
Q 048364 128 YDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVG 165 (400)
Q Consensus 128 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~ 165 (400)
.++|...|.+|+...++.|+ .+|...+...+.-.++.
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~-~tWe~~~~~i~~DpRY~ 52 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAF-STWEKELHKIVFDPRYL 52 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSS-SCHHHHHHHHHTCSGGG
T ss_pred HHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHccCCccc
Confidence 57889999999988888877 56777776665544443
No 354
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=26.31 E-value=2.7e+02 Score=22.82 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=32.8
Q ss_pred HHHHhcccchhHHHHHHHHHHHHhCcccchh----hhhHHHHHHHhCCHHHHHHHHhhCCC
Q 048364 22 ILKSCTHFNNLTVIHHLHSHILKLGFISHVY----VATSLLHEYVVTSFGFARKLFDELPE 78 (400)
Q Consensus 22 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~g~~~~a~~~~~~~~~ 78 (400)
.+...++.|+.+.+..+ ++.|..++.. -++.|..+...|..+-+.-+++.-..
T Consensus 28 ~L~~Av~~g~~~~V~~L----L~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~ 84 (337)
T 4g8k_A 28 LLIKAVQNEDVDLVQQL----LEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 84 (337)
T ss_dssp HHHHHHHTTCHHHHHHH----HHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCHHHHHHH----HHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc
Confidence 34444567787655444 4667766532 24455555588888888888776543
No 355
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=25.99 E-value=1.8e+02 Score=20.77 Aligned_cols=34 Identities=21% Similarity=0.170 Sum_probs=13.9
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048364 232 SEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG 265 (400)
Q Consensus 232 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 265 (400)
+-.|.++++.+.+.+...+..|..-.+..+.+.|
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3334444444444433334444333334444333
No 356
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.56 E-value=1.7e+02 Score=20.33 Aligned_cols=48 Identities=17% Similarity=0.165 Sum_probs=34.2
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccchh
Q 048364 117 AMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSVG 165 (400)
Q Consensus 117 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~ 165 (400)
.++..+...+..-.|.++++.+. ..+...+..|....|..+...|-+.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~-~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELR-RRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHH-HTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHH-HhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 45666666777888889988887 5555567777777777777776543
No 357
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=25.29 E-value=1.9e+02 Score=20.70 Aligned_cols=52 Identities=4% Similarity=0.016 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccch
Q 048364 112 VASWSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV 164 (400)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~ 164 (400)
...-..++..+...+..-.|.++++.+. ..+...+..|....|..+...|-+
T Consensus 26 T~qR~~IL~~l~~~~~~~sa~ei~~~l~-~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 26 SKQREEVVSVLYRSGTHLSPEEITHSIR-QKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHH-HHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHH-HhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3334445555555566667777777775 334445555655555555555543
No 358
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=24.73 E-value=94 Score=24.37 Aligned_cols=13 Identities=15% Similarity=0.010 Sum_probs=5.6
Q ss_pred cccchHHHHHHHH
Q 048364 367 MNEKWEGAERVRK 379 (400)
Q Consensus 367 ~~g~~~~a~~~~~ 379 (400)
..|+.+-+..+++
T Consensus 230 ~~g~~~~v~~Ll~ 242 (256)
T 2etb_A 230 KEGKIEIFRHILQ 242 (256)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HhCCHHHHHHHHh
Confidence 3455444443333
No 359
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=24.45 E-value=1.1e+02 Score=22.79 Aligned_cols=57 Identities=4% Similarity=-0.159 Sum_probs=44.5
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhcccchHHH
Q 048364 316 EPNVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTMNEKWEGA 374 (400)
Q Consensus 316 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 374 (400)
.|....++-++..++.-.-+++++..+.++...| . .+..+|.--++.+++..-+..|
T Consensus 108 ~~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~-I~ld~ylK~vR~LaReQF~~ra 164 (174)
T 2p22_A 108 VAKTDGLNQLYNLVAQDYALTDTIECLSRMLHRG-T-IPLDTFVKQGRELARQQFLVRW 164 (174)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-S-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHHHHHHHH
Confidence 3455566888888888888999999999999998 5 6888888888888776555444
No 360
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.05 E-value=2.1e+02 Score=20.91 Aligned_cols=52 Identities=15% Similarity=0.063 Sum_probs=31.1
Q ss_pred hCCChhhHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHhcCChhhHHHHHHHhhh
Q 048364 228 HRGYSEDALSLFEMMQATGVKP--NEMTFTGVLT-A-----CVHTGLVDEGRKYFKMIDE 279 (400)
Q Consensus 228 ~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 279 (400)
..|++-+|-+++++.-.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3467777777777665543344 3445555555 2 2346777777777776654
No 361
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=24.02 E-value=59 Score=25.60 Aligned_cols=84 Identities=8% Similarity=-0.134 Sum_probs=51.7
Q ss_pred HHHhcccchhHHHHHHHHHHHHhCcccch-------hhhhHHHHHHHh---CCHHHHHHHHhhCCCCC------------
Q 048364 23 LKSCTHFNNLTVIHHLHSHILKLGFISHV-------YVATSLLHEYVV---TSFGFARKLFDELPERN------------ 80 (400)
Q Consensus 23 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~---g~~~~a~~~~~~~~~~~------------ 80 (400)
+...++.|+.+....+++.+.+.|..++. .-.+.+..+... |+.+-+..+++.-..++
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 85 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTD 85 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccccc
Confidence 44456678888888888888888865443 345555555555 88777777776532211
Q ss_pred --hhhHHHHHHHHHcCCChHHHHHHHhhC
Q 048364 81 --AVTWNTMIKGYSKSGNVCEARDFFERM 107 (400)
Q Consensus 81 --~~~~~~l~~~~~~~~~~~~a~~~~~~~ 107 (400)
..-+ +.+...+..|+.+-+..+++.-
T Consensus 86 ~d~~g~-t~L~~A~~~g~~~~v~~Ll~~g 113 (256)
T 2etb_A 86 EFYQGH-SALHIAIEKRSLQCVKLLVENG 113 (256)
T ss_dssp TTTTTC-CHHHHHHHTTCHHHHHHHHHTT
T ss_pred ccccCC-CHHHHHHHcCCHHHHHHHHHcC
Confidence 1122 3344445677777777666653
No 362
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=22.53 E-value=3.4e+02 Score=22.69 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=14.0
Q ss_pred HHHHHHHHcCCChHHHHHHHhhCCCC
Q 048364 85 NTMIKGYSKSGNVCEARDFFERMPLR 110 (400)
Q Consensus 85 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 110 (400)
..++.-|...|+.++|.+.++++..|
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 34455555555555555555555544
No 363
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=22.05 E-value=3.3e+02 Score=24.38 Aligned_cols=73 Identities=10% Similarity=-0.045 Sum_probs=47.6
Q ss_pred HHHHHHhcCChHHHHHHHHhc-cCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHhhc
Q 048364 293 MVDLFGKAGFLEEAYEVIRTM-RLEP-NVIIWGSFLAACKEHKQFDMAERVIKQALRMVKPENDGGVFTLICDLYTM 367 (400)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 367 (400)
|++...-...++.|...|... .+.| +...||.|.-.....|+.-+|.-.|-+..... . |-+.+...|...+.+
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~-~-Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-F-PFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-B-CCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC-C-CChhHHHHHHHHHHH
Confidence 334444445667788888877 4555 45577887777777777777776666666554 3 566777777666653
No 364
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=21.87 E-value=2.2e+02 Score=20.20 Aligned_cols=48 Identities=15% Similarity=0.022 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcccch
Q 048364 115 WSAMIAAYLNAGAYDPGLKLFREMISNEGLTPDQMTIGAVLSGCSHLGSV 164 (400)
Q Consensus 115 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~ 164 (400)
-..++..+...+ .-.|.++++.+. ..+...+..|...-|..+...|-+
T Consensus 21 R~~Il~~l~~~~-h~ta~ei~~~l~-~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 21 RQLVLEAVDTLE-HATPDDILGEVR-KTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHHHHHHHHS-SBCHHHHHHHHH-TTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHH-hhCCCCCHhHHHHHHHHHHHCCcE
Confidence 344455555555 667777777776 444455566655556665555543
No 365
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.58 E-value=3.9e+02 Score=22.95 Aligned_cols=86 Identities=9% Similarity=0.108 Sum_probs=53.6
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHCCC----------------CCCHHHHHHHHHHHHhcCChhhHHHHHHHhhhhc----
Q 048364 222 LICGSAHRGYSEDALSLFEMMQATGV----------------KPNEMTFTGVLTACVHTGLVDEGRKYFKMIDEEY---- 281 (400)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~m~~~~~----------------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---- 281 (400)
++.......+.+++.+.++++...-. .+-......+.+.+...|+.+.|..+++......
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~ 161 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKD 161 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccC
Confidence 45566778899999999998865411 1122344566677888999999999998876421
Q ss_pred CCCCC--hhhHHHHHHHHHhcCChHHHH
Q 048364 282 DLEPR--IQHYGCMVDLFGKAGFLEEAY 307 (400)
Q Consensus 282 ~~~~~--~~~~~~l~~~~~~~g~~~~a~ 307 (400)
+..|. ...|...+..|...+++..+.
T Consensus 162 ~~~~~v~~~~y~~~~~~~~~~~~~a~~y 189 (393)
T 4b4t_O 162 SIPLRITNSFYSTNSQYFKFKNDFNSFY 189 (393)
T ss_dssp CSSSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 22221 123444444555556555443
No 366
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=21.37 E-value=5.1e+02 Score=24.27 Aligned_cols=21 Identities=14% Similarity=0.041 Sum_probs=14.9
Q ss_pred HhcCChHHHHHHHHhccCCcc
Q 048364 298 GKAGFLEEAYEVIRTMRLEPN 318 (400)
Q Consensus 298 ~~~g~~~~a~~~~~~~~~~p~ 318 (400)
...|+++.|++.++++++-|.
T Consensus 549 ~~~g~~~~AL~~i~~L~llPl 569 (661)
T 2qx5_A 549 YFNKQWQETLSQMELLDLLPF 569 (661)
T ss_dssp HHTTCHHHHHHHHHHTSCSCC
T ss_pred HHcCCHHHHHHHHHhCCCCCC
Confidence 567777777777777765553
No 367
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=21.17 E-value=1e+02 Score=19.31 Aligned_cols=31 Identities=13% Similarity=0.250 Sum_probs=17.9
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHh
Q 048364 282 DLEPRIQHYGCMVDLFGKAGFLEEAYEVIRT 312 (400)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 312 (400)
+++|++.||+-+.+++-+.--..++..+.++
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik~ 61 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAKE 61 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5667777777666655544444444444443
No 368
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=21.05 E-value=2.7e+02 Score=20.99 Aligned_cols=209 Identities=7% Similarity=0.019 Sum_probs=95.3
Q ss_pred hhhhHHHHHHHhCCHHHHHHHHhhCCCCChh--hHHHHHHHHHcCCChHHHHHHHhhCCCCC----hhhHHHHHHHHHhc
Q 048364 52 YVATSLLHEYVVTSFGFARKLFDELPERNAV--TWNTMIKGYSKSGNVCEARDFFERMPLRN----VASWSAMIAAYLNA 125 (400)
Q Consensus 52 ~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~ 125 (400)
...+.+..+...|+.+....+++.-...+.. .-.+.+...+..|+.+-+..+++.-...+ ..-.+. +...+..
T Consensus 8 ~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~-L~~A~~~ 86 (240)
T 3eu9_A 8 YSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTP-LHWATRQ 86 (240)
T ss_dssp GGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCH-HHHHHHH
T ss_pred ccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCCh-hHHHHHc
Confidence 3344555555888998888888765543221 12234556677888888777777654321 112222 3333445
Q ss_pred CCcchHHHHHHHHHhcCCCCCCHH---HHHHHHHHhhcccchhhhhhhhhhhHHHhccccchH---HHHHHHHHHHHhcC
Q 048364 126 GAYDPGLKLFREMISNEGLTPDQM---TIGAVLSGCSHLGSVGLLMGKSAHGFIVKNEWELNE---QIATILVDMYAKCG 199 (400)
Q Consensus 126 g~~~~a~~~~~~m~~~~~~~p~~~---~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g 199 (400)
|+.+-+ +.+. +.|..|+.. ..+ .+...+..|+.+- .+.+.+.|..++. .-.+.+..+.. .+
T Consensus 87 ~~~~~v----~~Ll-~~g~~~~~~~~~g~t-~l~~A~~~~~~~~------~~~Ll~~~~~~~~~~~~g~t~l~~a~~-~~ 153 (240)
T 3eu9_A 87 GHLSMV----VQLM-KYGADPSLIDGEGCS-CIHLAAQFGHTSI------VAYLIAKGQDVDMMDQNGMTPLMWAAY-RT 153 (240)
T ss_dssp TCHHHH----HHHH-HTTCCTTCCCTTSCC-HHHHHHHTTCHHH------HHHHHHTTCCTTCCCTTSCCHHHHHHH-HC
T ss_pred CCHHHH----HHHH-HcCCCCcccCCCCCC-HHHHHHHcCHHHH------HHHHHhcCCCccccCCCCCcHHHHHHH-hC
Confidence 554433 3333 334444321 112 2333344454443 3344444544322 12223333333 34
Q ss_pred CHHHHHHHHHhcc-CCCcc---cHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCChhhHHHH
Q 048364 200 FLKYALMVFELME-ERNVI---SWTALICGSAHRGYSEDALSLFEMMQATGVKPNEMTF--TGVLTACVHTGLVDEGRKY 273 (400)
Q Consensus 200 ~~~~A~~~~~~~~-~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~ 273 (400)
......+++.... ..+.. .-.+.+...+..|+.+-+.. +.+.|..++.... .+.+....+.|+.+-+..+
T Consensus 154 ~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~----Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L 229 (240)
T 3eu9_A 154 HSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISL----LLEAGANVDAQNIKGESALDLAKQRKNVWMINHL 229 (240)
T ss_dssp CSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHH----HHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred ChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHH----HHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence 4333344443332 22211 11123334455666554333 3344555442211 1234444566777666665
Q ss_pred HHHhh
Q 048364 274 FKMID 278 (400)
Q Consensus 274 ~~~~~ 278 (400)
++...
T Consensus 230 ~~~~~ 234 (240)
T 3eu9_A 230 QEARQ 234 (240)
T ss_dssp HHHC-
T ss_pred HHhhh
Confidence 55443
No 369
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=20.72 E-value=2.2e+02 Score=19.83 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=16.4
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048364 231 YSEDALSLFEMMQATGVKPNEMTFTGVLTACVHTG 265 (400)
Q Consensus 231 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 265 (400)
..-.|.++++.+.+.+...+..|..--+..+.+.|
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555555444444444444444444444
No 370
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=20.28 E-value=2.8e+02 Score=20.79 Aligned_cols=80 Identities=15% Similarity=0.127 Sum_probs=45.1
Q ss_pred hcCCHHHHHHHHHhccCCCcccHHHHHHHHHhCCChhhHHHHHHHHHHCCCC--C--------------C-HHHHHHHHH
Q 048364 197 KCGFLKYALMVFELMEERNVISWTALICGSAHRGYSEDALSLFEMMQATGVK--P--------------N-EMTFTGVLT 259 (400)
Q Consensus 197 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p--------------~-~~~~~~l~~ 259 (400)
-.|.+..+.-++......+..-|.. -+|-+.+++..|+..++.+....+. | | ...|+.+..
T Consensus 45 yngEY~R~Lf~L~~lNT~Ts~YYk~--LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~ 122 (242)
T 3kae_A 45 LNGEYTRALFHLHKLNTCTSKYYES--LCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGD 122 (242)
T ss_dssp HTTCHHHHHHHHHTCCBHHHHHHHH--HHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHH
T ss_pred hcchHhHHHHHHHhcchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHH
Confidence 4566666665554433211112222 2455667777777777777644332 1 1 234566666
Q ss_pred HHHhcCChhhHHHHHHHhh
Q 048364 260 ACVHTGLVDEGRKYFKMID 278 (400)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~ 278 (400)
.|.+.|+.++|+..+..--
T Consensus 123 lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 123 LCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHhhhHhhhhc
Confidence 6777788888887776544
Done!