BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048367
(85 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LW64|SF3BA_ARATH Uncharacterized protein At3g23325 OS=Arabidopsis thaliana
GN=At3g23325 PE=3 SV=1
Length = 87
Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 77/85 (90%), Positives = 83/85 (97%)
Query: 1 ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENES 60
ASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YF+IAENES
Sbjct: 3 ASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAENES 62
Query: 61 IGREHYNFMQKMLLPCGLPPEREDD 85
IGRE YNFMQKMLLPCGLPPERED+
Sbjct: 63 IGRERYNFMQKMLLPCGLPPEREDE 87
>sp|P58728|SF3BB_ARATH Uncharacterized protein At4g14342 OS=Arabidopsis thaliana
GN=At4g14342 PE=3 SV=1
Length = 87
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 77/85 (90%), Positives = 84/85 (98%)
Query: 1 ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENES 60
ASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YF+IAENES
Sbjct: 3 ASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAENES 62
Query: 61 IGREHYNFMQKMLLPCGLPPEREDD 85
IGRE YNFMQKMLLPCGLPPERE++
Sbjct: 63 IGRERYNFMQKMLLPCGLPPEREEE 87
>sp|Q9VHI4|SF3B5_DROME Probable splicing factor 3B subunit 5 OS=Drosophila melanogaster
GN=CG11985 PE=1 SV=1
Length = 85
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 66/83 (79%)
Query: 3 DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESIG 62
+R+NI+SQLEHLQ+KY+GTGHAD +FEW N RDS ASY+GHY IL YF+IAENES
Sbjct: 3 ERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKA 62
Query: 63 REHYNFMQKMLLPCGLPPEREDD 85
R +N M++ML PCG PPE+ +D
Sbjct: 63 RVRFNLMERMLQPCGPPPEKLED 85
>sp|Q9BWJ5|SF3B5_HUMAN Splicing factor 3B subunit 5 OS=Homo sapiens GN=SF3B5 PE=1 SV=1
Length = 86
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 49/84 (58%), Positives = 66/84 (78%)
Query: 2 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESI 61
+DR+ I+SQLEHLQ+KY+GTGHAD ++EW VN RDSY SY+GH+ +L YF+IAENES
Sbjct: 2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61
Query: 62 GREHYNFMQKMLLPCGLPPEREDD 85
R +N M+KML PCG P ++ ++
Sbjct: 62 ARVRFNLMEKMLQPCGPPADKPEE 85
>sp|Q56K13|SF3B5_BOVIN Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B5 PE=3 SV=1
Length = 86
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 49/84 (58%), Positives = 66/84 (78%)
Query: 2 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESI 61
+DR+ I+SQLEHLQ+KY+GTGHAD ++EW VN RDSY SY+GH+ +L YF+IAENES
Sbjct: 2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61
Query: 62 GREHYNFMQKMLLPCGLPPEREDD 85
R +N M+KML PCG P ++ ++
Sbjct: 62 ARVRFNLMEKMLQPCGPPADKPEE 85
>sp|Q923D4|SF3B5_MOUSE Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf3b5 PE=2 SV=1
Length = 86
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 48/84 (57%), Positives = 65/84 (77%)
Query: 2 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESI 61
+DR+ I+SQLEHLQ+KY+GTGHAD ++EW VN RDSY SY+GH+ +L YF+IAENES
Sbjct: 2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61
Query: 62 GREHYNFMQKMLLPCGLPPEREDD 85
R +N M+KML P G P ++ ++
Sbjct: 62 ARVRFNLMEKMLQPSGPPADKPEE 85
>sp|Q55BF5|SF3B5_DICDI Splicing factor 3B subunit 5 OS=Dictyostelium discoideum GN=sf3b5
PE=3 SV=1
Length = 94
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 64/84 (76%)
Query: 2 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESI 61
S+R ++NSQLEHLQ +YVGTGHAD+++ EW N RDS +S++GH L+ FSIAENES+
Sbjct: 2 SERESLNSQLEHLQMRYVGTGHADISKHEWLTNQHRDSLSSFIGHSSFLSLFSIAENESV 61
Query: 62 GREHYNFMQKMLLPCGLPPEREDD 85
GR YN + KM+ PCG P+ +D+
Sbjct: 62 GRVRYNTLTKMISPCGPAPKIKDN 85
>sp|Q9P7R6|YHV5_SCHPO Uncharacterized protein C211.05 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC211.05 PE=3 SV=1
Length = 85
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 52/79 (65%)
Query: 2 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESI 61
+DR ++LE LQA+YVG G+A ++EW VN RD+ +S VGH P+LAY + A E
Sbjct: 2 ADRLRSQAKLEQLQARYVGVGNAFTTKYEWMVNQHRDTLSSVVGHPPLLAYMATALGEPR 61
Query: 62 GREHYNFMQKMLLPCGLPP 80
+ N ++KM++PCG PP
Sbjct: 62 VQVRKNLLEKMIMPCGPPP 80
>sp|P0C074|YSF3_YEAST RDS3 complex subunit 10 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YSF3 PE=1 SV=1
Length = 85
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 15 QAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENE 59
+ KY+G G R +W N++ D+ + GH L Y S++ +
Sbjct: 15 KQKYIGLGDESTTREQWQRNVRNDTLNTLQGHSASLEYVSLSRGD 59
>sp|Q09215|YP66_CAEEL Uncharacterized protein B0495.6 OS=Caenorhabditis elegans
GN=B0495.6 PE=4 SV=1
Length = 87
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 3 DRFNINSQLEHLQAKYVGTG 22
+RF++ +QLEHLQ+KY GT
Sbjct: 6 ERFHVLAQLEHLQSKYTGTA 25
>sp|P35588|HYPB_HYPLI Hypodermin-B OS=Hypoderma lineatum PE=1 SV=1
Length = 256
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 11 LEHLQAKYVGTGHADLNRFEWAVNIQRDSY 40
L L + VG AD+ F W V+IQR Y
Sbjct: 24 LPQLDGRIVGGFEADIEDFPWQVSIQRGGY 53
>sp|P21325|RT67_ECOLX Retron EC67 protein OS=Escherichia coli PE=4 SV=1
Length = 586
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 6 NINSQLEHLQAKY---VGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESIG 62
N+N + + KY + G ADL +F V +++YASY G P + +N++
Sbjct: 409 NLNIFKSNEKTKYFLDLSGGTADLKKF---VERYKNNYASYYGSVPKQPVIMVLDNDTGP 465
Query: 63 REHYNFMQKMLLPC 76
+ NF++ + C
Sbjct: 466 SDLLNFLRNKVKSC 479
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,557,586
Number of Sequences: 539616
Number of extensions: 1138112
Number of successful extensions: 2205
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2193
Number of HSP's gapped (non-prelim): 16
length of query: 85
length of database: 191,569,459
effective HSP length: 56
effective length of query: 29
effective length of database: 161,350,963
effective search space: 4679177927
effective search space used: 4679177927
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)