Query 048367
Match_columns 85
No_of_seqs 113 out of 140
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 15:20:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048367.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048367hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h3o_A Transcription initiatio 55.9 6.7 0.00023 24.6 2.1 25 46-74 25-49 (75)
2 2wl8_A Peroxisomal biogenesis 47.3 5.5 0.00019 27.0 0.7 16 66-82 95-110 (126)
3 2y9u_A Tumor protein 63; apopt 35.8 15 0.00052 22.1 1.3 21 22-42 1-21 (69)
4 1ymm_C MBP peptide, HLA class 23.6 39 0.0013 17.4 1.4 17 67-83 6-22 (26)
5 3vgp_A Transmembrane oligosacc 18.0 82 0.0028 21.9 2.6 38 6-43 76-119 (164)
6 1zj6_A ADP-ribosylation factor 17.1 66 0.0022 20.1 1.8 29 54-82 158-186 (187)
7 2lkw_A Membrane fusion protein 16.4 44 0.0015 17.0 0.6 12 71-82 6-17 (26)
8 1jmx_A Amine dehydrogenase; ox 14.3 18 0.00062 29.7 -1.8 36 18-58 106-141 (494)
9 2cly_C ATP synthase coupling f 14.0 72 0.0025 20.0 1.3 19 7-28 40-58 (77)
10 3bw6_A Synaptobrevin homolog Y 12.7 24 0.00082 23.3 -1.3 27 48-74 77-103 (144)
No 1
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=55.86 E-value=6.7 Score=24.57 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=20.7
Q ss_pred ChhHHHHHHHhhCcchHHHHHHHHHHhhC
Q 048367 46 HYPILAYFSIAENESIGREHYNFMQKMLL 74 (85)
Q Consensus 46 H~~lL~Y~aiaenes~~r~r~~ll~kM~~ 74 (85)
+++..+|+|.|.-| |+| +||||+..
T Consensus 25 ~~dv~~~iS~a~qe---RLr-~llekl~~ 49 (75)
T 1h3o_A 25 HPDVVSYVSHATQQ---RLQ-NLVEKISE 49 (75)
T ss_dssp CTTHHHHHHHHHHH---HHH-HHHHHHHC
T ss_pred ChhHHHHhHHHHHH---HHH-HHHHHHHH
Confidence 67889999999877 787 88999864
No 2
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=47.33 E-value=5.5 Score=27.04 Aligned_cols=16 Identities=31% Similarity=0.692 Sum_probs=12.4
Q ss_pred HHHHHHhhCCCCCCCCC
Q 048367 66 YNFMQKMLLPCGLPPER 82 (85)
Q Consensus 66 ~~ll~kM~~pcg~pp~~ 82 (85)
..++++| |-||.||..
T Consensus 95 ~~Lmq~m-Q~~G~PP~e 110 (126)
T 2wl8_A 95 LDLMQQL-QDLGHPPKE 110 (126)
T ss_dssp HHHHHHH-HHTCCCCGG
T ss_pred HHHHHHH-HHcCCCcHH
Confidence 5677887 669999974
No 3
>2y9u_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle, mutations, A syndrome; 1.60A {Homo sapiens} PDB: 1rg6_A
Probab=35.78 E-value=15 Score=22.15 Aligned_cols=21 Identities=14% Similarity=0.207 Sum_probs=14.4
Q ss_pred CCCCccHHHHHHHhhhhhHhh
Q 048367 22 GHADLNRFEWAVNIQRDSYAS 42 (85)
Q Consensus 22 G~~dTTk~EW~tnihRDT~aS 42 (85)
|++|.|=.|||..|.=.-|+.
T Consensus 1 ~~~d~sv~~WLd~i~m~~Y~d 21 (69)
T 2y9u_A 1 GSTDCSIVSFLARLGCSSCLD 21 (69)
T ss_dssp --CCCBHHHHHHTTTCGGGHH
T ss_pred CCCCCcHHHHHHHcCChHHHH
Confidence 789999999999875443433
No 4
>1ymm_C MBP peptide, HLA class II histocompatibility antigen, DR beta; protein-protein complex, T cell repertoire, auto-immunity, I system; HET: NAG; 3.50A {Homo sapiens}
Probab=23.56 E-value=39 Score=17.40 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=13.7
Q ss_pred HHHHHhhCCCCCCCCCC
Q 048367 67 NFMQKMLLPCGLPPERE 83 (85)
Q Consensus 67 ~ll~kM~~pcg~pp~~~ 83 (85)
.|.+.|+.|-+|||...
T Consensus 6 HFFKNivspr~pp~~q~ 22 (26)
T 1ymm_C 6 HFFKNIVTPRGGSGGGG 22 (26)
T ss_pred hhhhhccCCCCCCCCcC
Confidence 46789999999998753
No 5
>3vgp_A Transmembrane oligosaccharyl transferase, putativ; glycosyltransferase, cell membrane; 1.75A {Archaeoglobus fulgidus}
Probab=17.96 E-value=82 Score=21.89 Aligned_cols=38 Identities=13% Similarity=0.094 Sum_probs=26.8
Q ss_pred hHHHHHHHHHhhhc------CCCCCCccHHHHHHHhhhhhHhhh
Q 048367 6 NINSQLEHLQAKYV------GTGHADLNRFEWAVNIQRDSYASY 43 (85)
Q Consensus 6 ~~~~qle~Lq~KY~------GtG~~dTTk~EW~tnihRDT~aS~ 43 (85)
....-++.|..+|| .+|..|+.|+-|+..+..-+...+
T Consensus 76 ~A~~il~~l~v~YV~v~~~~~~~~~d~~Kf~~m~~~a~~~~~~y 119 (164)
T 3vgp_A 76 EAIKIAKKRGVRYVVTADEITMKDANNTKFPAIMRIAGYNVDLM 119 (164)
T ss_dssp HHHHHHHHHTCCEEEECGGGTTSCTTSCSHHHHHHHTTCCGGGS
T ss_pred HHHHHHHHcCCcEEEEEECcccccCcchhHHHHHHHHcCCchhc
Confidence 34556778888887 235678999999999875444443
No 6
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=17.14 E-value=66 Score=20.10 Aligned_cols=29 Identities=7% Similarity=0.022 Sum_probs=16.7
Q ss_pred HHhhCcchHHHHHHHHHHhhCCCCCCCCC
Q 048367 54 SIAENESIGREHYNFMQKMLLPCGLPPER 82 (85)
Q Consensus 54 aiaenes~~r~r~~ll~kM~~pcg~pp~~ 82 (85)
|-..|+....+...+++.+..++.++|+.
T Consensus 158 Sa~~g~gi~~l~~~l~~~~~~~~~~~~~~ 186 (187)
T 1zj6_A 158 CALTGEGLCQGLEWMMSRLKIRLEHHHHH 186 (187)
T ss_dssp BTTTTBTHHHHHHHHHHHHCC--------
T ss_pred cCCCCcCHHHHHHHHHHHHHHHhhhhccC
Confidence 44458888889999999887877777654
No 7
>2lkw_A Membrane fusion protein P15; viral protein; NMR {Baboon orthoreovirus}
Probab=16.38 E-value=44 Score=17.00 Aligned_cols=12 Identities=25% Similarity=0.584 Sum_probs=9.0
Q ss_pred HhhCCCCCCCCC
Q 048367 71 KMLLPCGLPPER 82 (85)
Q Consensus 71 kM~~pcg~pp~~ 82 (85)
.++||-.|||..
T Consensus 6 sivqppapppna 17 (26)
T 2lkw_A 6 SIVQPPAPPPNA 17 (26)
T ss_pred ccccCCCcCCCe
Confidence 468898888854
No 8
>1jmx_A Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jmz_A*
Probab=14.35 E-value=18 Score=29.70 Aligned_cols=36 Identities=19% Similarity=0.286 Sum_probs=28.7
Q ss_pred hcCCCCCCccHHHHHHHhhhhhHhhhhCChhHHHHHHHhhC
Q 048367 18 YVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAEN 58 (85)
Q Consensus 18 Y~GtG~~dTTk~EW~tnihRDT~aS~~gH~~lL~Y~aiaen 58 (85)
..|.|+..++..||-.-|| .++|+.+-|+|.|++..
T Consensus 106 ~dGkG~qRr~~~EW~~lv~-----fh~gq~pt~eyqa~~rd 141 (494)
T 1jmx_A 106 GARVALQRRPAKEWEHLVN-----FHLGQWPSLEYQAQARD 141 (494)
T ss_dssp SHHHHTEECCHHHHHHHHH-----HHHHHCGGGGGSTTTTT
T ss_pred cccCccccCCHHHHHHHHH-----HHHhhCchhhhhhhccc
Confidence 3567788889999976655 68999999999887764
No 9
>2cly_C ATP synthase coupling factor 6, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.45.1.1 PDB: 1vzs_A 2wss_V*
Probab=14.00 E-value=72 Score=20.04 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=14.0
Q ss_pred HHHHHHHHHhhhcCCCCCCccH
Q 048367 7 INSQLEHLQAKYVGTGHADLNR 28 (85)
Q Consensus 7 ~~~qle~Lq~KY~GtG~~dTTk 28 (85)
.+..++.|+..|-| | |.|+
T Consensus 40 l~~el~kL~~~YGg-g--Dm~k 58 (77)
T 2cly_C 40 LDRELFKLKQMYGK-A--DMNT 58 (77)
T ss_dssp HHHHHHHHHHHHCS-S--CTTS
T ss_pred HHHHHHHHHHHHCc-c--hHhh
Confidence 45678899999977 5 6654
No 10
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=12.66 E-value=24 Score=23.31 Aligned_cols=27 Identities=22% Similarity=0.237 Sum_probs=22.9
Q ss_pred hHHHHHHHhhCcchHHHHHHHHHHhhC
Q 048367 48 PILAYFSIAENESIGREHYNFMQKMLL 74 (85)
Q Consensus 48 ~lL~Y~aiaenes~~r~r~~ll~kM~~ 74 (85)
+=+.|++|++.+-+.|+=|.||+++.+
T Consensus 77 ~gl~~l~i~D~~yp~rvAF~~L~~i~~ 103 (144)
T 3bw6_A 77 EGICGVLITDKEYPVRPAYTLLNKILD 103 (144)
T ss_dssp TSEEEEEEEETTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCChhHHHHHHHHHHH
Confidence 347789999999999999999999864
Done!