Query 048367
Match_columns 85
No_of_seqs 113 out of 140
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 15:20:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048367.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048367hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2g7la2 a.121.1.1 (A:87-230) P 37.6 19 0.0014 21.1 3.8 42 29-72 4-45 (144)
2 d2g7ga2 a.121.1.1 (A:74-205) P 30.6 36 0.0026 19.5 4.1 43 29-73 4-46 (132)
3 d1idra_ a.1.1.1 (A:) Protozoan 26.7 35 0.0025 20.0 3.6 50 29-81 21-70 (127)
4 d1jmxa2 a.3.1.7 (A:86-162) Qui 24.6 8.1 0.00059 23.1 0.2 29 26-59 29-57 (77)
5 d1pbya2 a.3.1.7 (A:86-165) Qui 21.8 10 0.00073 22.8 0.2 28 27-59 30-57 (80)
6 d1s69a_ a.1.1.1 (A:) Protozoan 19.9 67 0.0049 18.3 3.9 50 29-81 10-59 (123)
7 d2cqqa1 a.4.1.3 (A:8-66) DnaJ 18.6 49 0.0036 18.0 2.8 29 7-46 8-36 (59)
8 d1su3a1 a.20.1.2 (A:32-98) Fib 18.6 24 0.0017 19.6 1.4 13 67-79 51-64 (67)
9 d1z0xa2 a.121.1.1 (A:72-220) T 18.5 57 0.0041 19.3 3.4 50 29-80 4-56 (149)
10 d2bmwa2 c.25.1.1 (A:142-303) F 17.3 11 0.00081 22.0 -0.3 6 75-80 119-124 (162)
No 1
>d2g7la2 a.121.1.1 (A:87-230) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=37.55 E-value=19 Score=21.13 Aligned_cols=42 Identities=7% Similarity=-0.022 Sum_probs=31.5
Q ss_pred HHHHHHhhhhhHhhhhCChhHHHHHHHhhCcchHHHHHHHHHHh
Q 048367 29 FEWAVNIQRDSYASYVGHYPILAYFSIAENESIGREHYNFMQKM 72 (85)
Q Consensus 29 ~EW~tnihRDT~aS~~gH~~lL~Y~aiaenes~~r~r~~ll~kM 72 (85)
.||++...+.....+.-||.+...+.......+.-+| +++.+
T Consensus 4 r~~Lr~~a~~~r~~l~~HP~~~~l~~~~~~~~p~~l~--~~e~~ 45 (144)
T d2g7la2 4 REQLRAVLTSYTLVLFAHPQLARSALVARPSGENYLR--LVERV 45 (144)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHSCCCSHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHHhcCCCCcccHHH--HHHHH
Confidence 4789999999999999999999988666555554433 34444
No 2
>d2g7ga2 a.121.1.1 (A:74-205) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=30.59 E-value=36 Score=19.46 Aligned_cols=43 Identities=12% Similarity=0.048 Sum_probs=31.2
Q ss_pred HHHHHHhhhhhHhhhhCChhHHHHHHHhhCcchHHHHHHHHHHhh
Q 048367 29 FEWAVNIQRDSYASYVGHYPILAYFSIAENESIGREHYNFMQKML 73 (85)
Q Consensus 29 ~EW~tnihRDT~aS~~gH~~lL~Y~aiaenes~~r~r~~ll~kM~ 73 (85)
.||++...+.-.+.+..||.++..+.-.-...+..+ .++++++
T Consensus 4 r~~lr~~a~~~r~~~~~HP~~~~l~~~~~~~~p~~l--~~~e~~l 46 (132)
T d2g7ga2 4 DEAFSEWARSYRAAFSRHPTAIRLLATETVRDPGSL--SVYHSAA 46 (132)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGHHHHHTSCCCCHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHhhcCCCCChhHH--HHHHHHH
Confidence 478999999999999999999988765544444433 3455543
No 3
>d1idra_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbN [TaxId: 1773]}
Probab=26.65 E-value=35 Score=19.99 Aligned_cols=50 Identities=18% Similarity=0.203 Sum_probs=40.0
Q ss_pred HHHHHHhhhhhHhhhhCChhHHHHHHHhhCcchHHHHHHHHHHhhCCCCCCCC
Q 048367 29 FEWAVNIQRDSYASYVGHYPILAYFSIAENESIGREHYNFMQKMLLPCGLPPE 81 (85)
Q Consensus 29 ~EW~tnihRDT~aS~~gH~~lL~Y~aiaenes~~r~r~~ll~kM~~pcg~pp~ 81 (85)
++.+..+..+-|.-+..++.+-.||+ +....++|..+.+=+.+=+|.|+.
T Consensus 21 ~~~I~~lv~~FY~~i~~d~~l~~~F~---~~d~~~~~~~~~~fl~~~~GGp~~ 70 (127)
T d1idra_ 21 HEAIEVVVEDFYVRVLADDQLSAFFS---GTNMSRLKGKQVEFFAAALGGPEP 70 (127)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTGGGGT---TCCHHHHHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHHHHHHHHcChHHHHhcC---CCCHHHHHHHHHHHHHHHhCcCCC
Confidence 56778889999999999998888985 555677777777777777888875
No 4
>d1jmxa2 a.3.1.7 (A:86-162) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Pseudomonas putida [TaxId: 303]}
Probab=24.59 E-value=8.1 Score=23.05 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=22.6
Q ss_pred ccHHHHHHHhhhhhHhhhhCChhHHHHHHHhhCc
Q 048367 26 LNRFEWAVNIQRDSYASYVGHYPILAYFSIAENE 59 (85)
Q Consensus 26 TTk~EW~tnihRDT~aS~~gH~~lL~Y~aiaene 59 (85)
-|-.||-.-+| .++|+.+-|+|.|++..-
T Consensus 29 Rt~~EW~~Lv~-----fHlGq~PtlEyqA~~RDR 57 (77)
T d1jmxa2 29 RPAKEWEHLVN-----FHLGQWPSLEYQAQARDR 57 (77)
T ss_dssp CCHHHHHHHHH-----HHHHHCGGGGGSTTTTTT
T ss_pred CCHHHHHHHHH-----hhhccCchHHHHHhcccc
Confidence 36678876655 789999999999887643
No 5
>d1pbya2 a.3.1.7 (A:86-165) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}
Probab=21.81 E-value=10 Score=22.78 Aligned_cols=28 Identities=21% Similarity=0.551 Sum_probs=22.0
Q ss_pred cHHHHHHHhhhhhHhhhhCChhHHHHHHHhhCc
Q 048367 27 NRFEWAVNIQRDSYASYVGHYPILAYFSIAENE 59 (85)
Q Consensus 27 Tk~EW~tnihRDT~aS~~gH~~lL~Y~aiaene 59 (85)
|-.||-.-+| .++|+.+-|+|.|++..-
T Consensus 30 t~~EW~~Lv~-----fHlGQ~PtlEyqA~~RDR 57 (80)
T d1pbya2 30 TPEDWKHLVN-----FHLGQFPTLEYQALARDR 57 (80)
T ss_dssp CHHHHHHHHH-----HHHHHCGGGGGSTTTTTT
T ss_pred CHHHHHHHHH-----hhhccCchHHHHHhccCc
Confidence 5678876655 789999999998887643
No 6
>d1s69a_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Cyanobacteria (Synechocystis sp.), pcc 6803 [TaxId: 1143]}
Probab=19.87 E-value=67 Score=18.30 Aligned_cols=50 Identities=8% Similarity=0.041 Sum_probs=38.0
Q ss_pred HHHHHHhhhhhHhhhhCChhHHHHHHHhhCcchHHHHHHHHHHhhCCCCCCCC
Q 048367 29 FEWAVNIQRDSYASYVGHYPILAYFSIAENESIGREHYNFMQKMLLPCGLPPE 81 (85)
Q Consensus 29 ~EW~tnihRDT~aS~~gH~~lL~Y~aiaenes~~r~r~~ll~kM~~pcg~pp~ 81 (85)
+|=+..+..+-|.-+..++.+-.||+ +......|..+..=+++=||.|+.
T Consensus 10 ~~~i~~lv~~FY~~i~~d~~l~~~F~---~~d~~~~~~~~~~Fl~~~~GGp~~ 59 (123)
T d1s69a_ 10 TTAVDLAVDKFYERVLQDDRIKHFFA---DVDMAKQRAHQKAFLTYAFGGTDK 59 (123)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTGGGGT---TCCHHHHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHhcC---cCCHHHHHHHHHHHHHHHcCcCCC
Confidence 45567788888988999998888885 456667777777777777888875
No 7
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.64 E-value=49 Score=17.97 Aligned_cols=29 Identities=34% Similarity=0.452 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhhcCCCCCCccHHHHHHHhhhhhHhhhhCC
Q 048367 7 INSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGH 46 (85)
Q Consensus 7 ~~~qle~Lq~KY~GtG~~dTTk~EW~tnihRDT~aS~~gH 46 (85)
++.+||..-.||.+ |.+| +|| .+|..+|.
T Consensus 8 e~~~le~Al~~~P~-gt~~--RW~--------~IA~~vgk 36 (59)
T d2cqqa1 8 DLSQLTRSMVKFPG-GTPG--RWE--------KIAHELGR 36 (59)
T ss_dssp HHHHHHHHHHHSCT-TCTT--HHH--------HHHHHHTS
T ss_pred HHHHHHHHHHHCCC-CCcH--HHH--------HHHHHHCC
Confidence 56789999999987 5553 554 45666653
No 8
>d1su3a1 a.20.1.2 (A:32-98) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.60 E-value=24 Score=19.56 Aligned_cols=13 Identities=38% Similarity=0.948 Sum_probs=9.2
Q ss_pred HHHHHhhCC-CCCC
Q 048367 67 NFMQKMLLP-CGLP 79 (85)
Q Consensus 67 ~ll~kM~~p-cg~p 79 (85)
.-++.|.+| ||-|
T Consensus 51 ~T~~~M~~PRCGvp 64 (67)
T d1su3a1 51 ETLKVMKQPRCGVP 64 (67)
T ss_dssp HHHHHHTSCBCSSC
T ss_pred HHHHHHCCCCCCCC
Confidence 346788887 8866
No 9
>d1z0xa2 a.121.1.1 (A:72-220) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]}
Probab=18.49 E-value=57 Score=19.31 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=33.8
Q ss_pred HHHHHHhhhhhHhhhhCChhHHHHHHHhhCcchHHHHHHHHHHhh---CCCCCCC
Q 048367 29 FEWAVNIQRDSYASYVGHYPILAYFSIAENESIGREHYNFMQKML---LPCGLPP 80 (85)
Q Consensus 29 ~EW~tnihRDT~aS~~gH~~lL~Y~aiaenes~~r~r~~ll~kM~---~pcg~pp 80 (85)
.|+|+...+.-...+.-||.++..+.-.....+..+ .+++.|+ ..+|-+|
T Consensus 4 r~~L~~~a~~~~~~~~~hP~~~~l~~~~~~~~p~~l--~~~e~~l~~L~~aGl~~ 56 (149)
T d1z0xa2 4 YSDLLAFMENYYDLYQQFPCAVAIEIQTVPAYPQRL--RHLNQMMGILREAGFSP 56 (149)
T ss_dssp HHHHHHHHHHHHHHHHHSTTHHHHHHTSCCCSHHHH--HHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHhhhccccchHHH--HHHHHHHHHHHccCCCH
Confidence 477888888999999999999988765555555443 3344433 3455554
No 10
>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}
Probab=17.32 E-value=11 Score=21.99 Aligned_cols=6 Identities=67% Similarity=1.575 Sum_probs=4.6
Q ss_pred CCCCCC
Q 048367 75 PCGLPP 80 (85)
Q Consensus 75 pcg~pp 80 (85)
=||||+
T Consensus 119 vCGp~~ 124 (162)
T d2bmwa2 119 ICGPPP 124 (162)
T ss_dssp EEECTT
T ss_pred EECCHH
Confidence 399986
Done!