BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048368
         (904 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WBO|A Chain A, Crystal Structure Of Vioc In Complex With L-Arginine
 pdb|2WBP|A Chain A, Crystal Structure Of Vioc In Complex With Fe(Ii), (2s,3s)-
           Hydroxyarginine, And Succinate
          Length = 358

 Score = 33.1 bits (74), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 12/88 (13%)

Query: 706 FLLHCRLLQHSLSRRMRDNSLKALWTAEKKALFLTVPVYLAGALIALFVNWRTSKT-GIM 764
           FLL   ++ H L RR+R    +A   A   AL +        AL +  V+WRT++T G  
Sbjct: 56  FLLDAPVIAHELPRRLRTFMARARLDAWPHALVVRGNPVDDAALGSTPVHWRTARTPGSR 115

Query: 765 AQSFLYNNHQHSLWGNLRSYAGLILDGF 792
             SFL           L  YAGL+ D F
Sbjct: 116 PLSFL-----------LMLYAGLLGDVF 132


>pdb|2WBQ|A Chain A, Crystal Structure Of Vioc In Complex With (2s,3s)-
           Hydroxyarginine
          Length = 358

 Score = 32.0 bits (71), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 12/88 (13%)

Query: 706 FLLHCRLLQHSLSRRMRDNSLKALWTAEKKALFLTVPVYLAGALIALFVNWRTSKT-GIM 764
           FLL   ++ H L +R+R    +A   A   AL +        AL +  V+WRT++T G  
Sbjct: 56  FLLDAPVIAHELPKRLRTFMARARLDAWPHALVVRGNPVDDAALGSTPVHWRTARTPGSR 115

Query: 765 AQSFLYNNHQHSLWGNLRSYAGLILDGF 792
             SFL           L  YAGL+ D F
Sbjct: 116 PLSFL-----------LMLYAGLLGDVF 132


>pdb|1F5J|A Chain A, Crystal Structure Of Xynb, A Highly Thermostable Beta-1,4-
           Xylanase From Dictyoglomus Thermophilum Rt46b.1, At 1.8
           A Resolution
 pdb|1F5J|B Chain B, Crystal Structure Of Xynb, A Highly Thermostable Beta-1,4-
           Xylanase From Dictyoglomus Thermophilum Rt46b.1, At 1.8
           A Resolution
          Length = 199

 Score = 31.2 bits (69), Expect = 2.8,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 11/88 (12%)

Query: 296 YYRSFNPETTFVAEGSW-DWKKNRLCVAACRILN--THDSLDNSSVEDCSIRLTLRFPAI 352
           Y  S NP   F    SW +W+           ++  T+D    + V   SI  T  F   
Sbjct: 81  YGWSTNPLVEFYIVESWGNWRPPGATSLGQVTIDGGTYDIYRTTRVNQPSIVGTATFDQY 140

Query: 353 WSIRASTSMSGQI--------WSNRALN 372
           WS+R S   SG +        W+NR LN
Sbjct: 141 WSVRTSKRTSGTVTVTDHFRAWANRGLN 168


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,392,726
Number of Sequences: 62578
Number of extensions: 1085619
Number of successful extensions: 1847
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1847
Number of HSP's gapped (non-prelim): 7
length of query: 904
length of database: 14,973,337
effective HSP length: 108
effective length of query: 796
effective length of database: 8,214,913
effective search space: 6539070748
effective search space used: 6539070748
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)