Query 048368
Match_columns 904
No_of_seqs 136 out of 147
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 08:52:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048368.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048368hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11145 DUF2921: Protein of u 100.0 3E-217 6E-222 1919.8 68.3 826 40-886 1-908 (909)
2 PF11145 DUF2921: Protein of u 100.0 9.5E-44 2.1E-48 427.3 22.4 271 296-597 109-395 (909)
3 KOG0828 Predicted E3 ubiquitin 99.9 9.8E-24 2.1E-28 233.9 8.6 289 554-899 230-560 (636)
4 smart00679 CTNS Repeated motif 31.4 20 0.00044 26.3 0.6 23 793-816 3-25 (32)
5 TIGR00951 2A43 Lysosomal Cysti 27.0 20 0.00043 38.5 -0.2 82 794-882 20-101 (220)
6 KOG3599 Ca2+-modulated nonsele 23.1 2.7E+02 0.0058 35.8 8.5 137 553-716 425-572 (798)
7 PF06191 DUF995: Protein of un 21.2 93 0.002 31.7 3.3 27 301-327 64-91 (145)
8 PF08693 SKG6: Transmembrane a 14.4 1.1E+02 0.0023 24.9 1.5 18 858-875 15-32 (40)
9 PF06507 Auxin_resp: Auxin res 14.2 3.2E+02 0.0069 25.4 4.7 39 552-593 36-74 (83)
10 PF08016 PKD_channel: Polycyst 14.2 4.5E+02 0.0098 30.6 7.2 28 694-721 293-320 (425)
No 1
>PF11145 DUF2921: Protein of unknown function (DUF2921); InterPro: IPR021319 This eukaryotic family of proteins has no known function.
Probab=100.00 E-value=2.9e-217 Score=1919.83 Aligned_cols=826 Identities=44% Similarity=0.720 Sum_probs=725.5
Q ss_pred cccCCCCCCCCCCCC-C-----CCCCCCCCCCCcceee-ecCCCCCCCCCCCcccCCcceeEEEecceeecCCCc-EEEE
Q 048368 40 YSDHCASVVPESTAT-A-----PEFASLPFLPFQNGYY-DGGDRILDPNPSEYSSNKHNLLSFHTQNVYTTNAEG-VFKF 111 (904)
Q Consensus 40 Ys~hC~s~vP~s~~t-~-----~~~~~~~~~~~~~GYF-sGGd~if~~~~~~~~~~~~rsfsf~~~~v~rT~~~~-v~~v 111 (904)
|++||++++|+++.. + +...+++++++++||| +|||.||++|++.... .+|+|||+|++|+||++++ |+||
T Consensus 1 Y~~hC~svvp~a~~l~~~~~~~~~~~s~~L~~~~ggyfq~GGd~Lfp~d~s~~~~-~~r~~SF~~~~V~~T~~~~~vv~V 79 (909)
T PF11145_consen 1 YKRHCASVVPSASELKDDDDTRSLLISFELSFFNGGYFQAGGDPLFPFDDSDSPS-SLRSFSFWPTHVDRTTRPGKVVKV 79 (909)
T ss_pred CcccccCCCCCccccccccCcccccccccccCCCCCeecCCCCCCCCCCcccccc-ccceEEEEeeeeccccCCCcEEEE
Confidence 899999999999933 1 2223333457799999 9999999999765332 3799999999999999999 9999
Q ss_pred EEEEEEeccccCCCccccccccc--CCCccC--CCceeEEEEeceeecCCCceeeeccCCcccCCCceeec--ceEEEEc
Q 048368 112 EGNLHFYNSYHFGHGRTYGHSFF--SPLRTG--DDSALSFSLKGFWSKSSGKLCMVGSGTSYSPEGNLLHH--PAVLKLN 185 (904)
Q Consensus 112 ~atL~l~~~r~~~~~~~~~~~~~--~~~~~~--~~~s~sF~L~GfwS~ssg~LCMVGsgs~~~~~g~~~~~--~~~l~L~ 185 (904)
+|+|+|+++|..+.++++..+++ +++... +.++++|+||||||++||+|||||+||+++.||..+.+ ||+||||
T Consensus 80 sg~LtL~isr~~~~~~~~~~~~~~~~~~~~~~pg~ssLsf~LeG~YSe~sg~LCMVGsgs~~s~~g~~v~~~~~~vL~Lr 159 (909)
T PF11145_consen 80 SGTLTLSISRNSARSSYYYYDHRRRSPEFYRWPGRSSLSFSLEGFYSEGSGVLCMVGSGSGYSNDGPPVKLDDNAVLVLR 159 (909)
T ss_pred EEEEEEEeecCCCCccccccccccCCcceecCCCceEEEEEEEEEEEcCCCcEEEeccccccCCCCCceeeecceEEEEc
Confidence 99999999887554444333222 222223 45799999999999999999999999999999966544 9999999
Q ss_pred cCCCCCCcccc-------------------eEeeee-cc-ccc--------cCCCCC---c--ccccccccccccccccc
Q 048368 186 GVKDSSNITSL-------------------YTMFSK-EL-ENK--------CSGEIS---V--PAENLSLRLQVSSTICS 231 (904)
Q Consensus 186 ~p~~~s~~~~~-------------------~tlv~~-e~-~~~--------~~~~~~---~--~~~~l~~~~~~~~~~C~ 231 (904)
+|+++|+|+++ ++|+++ |. ++| |++++. + ..++++ .++.++++|+
T Consensus 160 yPk~~sLtsr~V~G~LeS~n~~~d~~YFd~VsLls~~~~~~~Y~Y~lv~~sc~~~~~~d~~~~~~~~~~-~~~~~~~~C~ 238 (909)
T PF11145_consen 160 YPKPSSLTSRFVTGELESLNSKSDSAYFDPVSLLSQLEGYSNYEYTLVSKSCDPPPYGDGDVGDGSSLS-DVYSGNFFCS 238 (909)
T ss_pred CCCcccccccceeEEEEecCCCCCccccceeEEEecCCCccCceEEEccccCCCCcccccccccccccc-cccCCCCCCh
Confidence 99999999999 677766 32 333 555541 1 134567 7789999999
Q ss_pred ccccc-ccceeeeecCCCCCCCCCCCCCCCCCCCCccEEEEeEeecCCCceeEEEEEeeCCCCCcc-----cccCCCCeE
Q 048368 232 ILKRR-VNEFELEYASDCNSSTSCNPFGDAVGYLPQVMSLNTIQCSKEGQRLRFLMEFPNSSDVGY-----YRSFNPETT 305 (904)
Q Consensus 232 ~L~~~-~~~f~Ley~~~c~st~~C~Pf~~~~~~l~~~m~~~~~~C~~~~~~~r~~~vF~~~~~~~~-----~~~g~~~~t 305 (904)
+|.+. .++|+|||+|+|++++.|+|+++.++.++.+|+||++||+++ +++||++||+|+++.+. .|+|++++|
T Consensus 239 ~L~~~~~~~f~l~y~~~C~st~~~~~~~gp~~~~~~~m~~~~v~C~~~-g~vrv~~vF~~~~~~e~~~~~~~r~gl~~~t 317 (909)
T PF11145_consen 239 ILRRFLRGSFKLEYNWDCNSTDACCSFGGPFGLLPVRMHMQQVRCEED-GAVRVSAVFRNVSPSEHYYPARPRTGLSNMT 317 (909)
T ss_pred hhHhcCCCceEeEECCCCCCcccccCCCCCcccCCceEEEEeeEecCC-CcEEEEEEEcCCCchhhcccccccccccCce
Confidence 99555 678999999999999999999988887778999999999997 59999999999999442 556777999
Q ss_pred EEEEEEEecCCCeeEEEEEeecccCCCCCCCccccCceEEEEEcCCcceeeecceEEEEEEeCCC--CCCCCCcceee--
Q 048368 306 FVAEGSWDWKKNRLCVAACRILNTHDSLDNSSVEDCSIRLTLRFPAIWSIRASTSMSGQIWSNRA--LNDTGYFGRIL-- 381 (904)
Q Consensus 306 lvaEG~Wd~ssgqLCMVGC~~l~s~~s~~~~~v~dC~i~L~LrfP~~~SI~~Rs~V~G~I~S~~~--~~ds~yF~~I~-- 381 (904)
|+|||+||+++||||||||+++++.++.+++.++||+|||+||||++|||||||+|+|+|||+++ .+++++|+.|.
T Consensus 318 LvAEG~Wd~s~gqLCmvaCrv~~~~~s~~~~~v~dC~ir~sl~FPav~SIr~RS~v~G~I~s~~~~~~~~~~~f~~i~~~ 397 (909)
T PF11145_consen 318 LVAEGVWDSSSGQLCMVACRVGNSDDSLANAGVGDCSIRMSLWFPAVWSIRQRSIVVGQIWSNSQGSSNDPLYFSRIVSP 397 (909)
T ss_pred EEEEeeEcCCCCcEEEEeeeeccccccccccccCCCCceEEEEecCeEEEeecceEEEEEecCCccccCCCcchhheeee
Confidence 99999999999999999999999988888999999999999999999999999999999999998 88999999998
Q ss_pred ---ecccCccccccCCCceeecchhhcccccccCCcccccc---cCCCCCC----CccCcceeEEEEecCC-Cccccccc
Q 048368 382 ---FQSTDNEVLKVPGLKYEYTEMEKVRNMSCLQKKPLRNS---LEKYPDG----FSQEMNFGISVKISGG-KIAWGHAL 450 (904)
Q Consensus 382 ---f~s~~~~~~~~sg~~Y~YT~ve~A~k~~c~~~~p~~~k---g~~fP~~----~s~d~~f~~~L~~~~~-~~~~g~a~ 450 (904)
|++..+....+++++|+|||+|+|+| +|.+++|.++| +++||++ .++||+|+|+++++++ ++.+|++.
T Consensus 398 s~~~~~~~~~~~~l~~lkY~YTkvd~A~k-~~~~~~~~~~kks~~~~yP~~~~~~s~sDl~fdl~v~~s~~~~~~~g~a~ 476 (909)
T PF11145_consen 398 SELFNSFGNSSSNLSGLKYNYTKVDEAKK-HCRRNEPSKFKKSLGLSYPDNLGNYSSSDLRFDLSVRNSAGPDLPSGYAS 476 (909)
T ss_pred ccccccccccccCccCceeeeeeHHHHHH-HHHhcCCcccccccCCCCCCccccccHhhhcccEEEeccccccCCCCCcc
Confidence 77777888899999999999999999 99998876544 6899988 5899999999998876 57899999
Q ss_pred ccccccccccCcccccccCcCCC----ccccccccccCCcceeeEEEEeccccccccCCccccccccCcccceeEEEEEe
Q 048368 451 PIAVDDQISPLSESFISWSSSST----TSSVESNISSSKPLNISYKISFRPYYYLKLGGLESLFNISSSWERRVAIYAEG 526 (904)
Q Consensus 451 P~~~G~~~~~~~~~~~~~~cs~~----~~~v~~~~~~s~llnVSy~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~IsAEG 526 (904)
|+++|+.|..+.....+...+.+ ..+..++.+.+.++||||+|+++.+. ....++|+|||
T Consensus 477 plslG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llNVSy~i~~~~~~----------------~~~~~~isaEG 540 (909)
T PF11145_consen 477 PLSLGSLFGRGDPLSADDSFSRHAASPSSPEVTEMQHSRLLNVSYEISLSGSI----------------SSNSSQISAEG 540 (909)
T ss_pred eEEECchhcccCccccCcccccccccccccccccccccceeEEEEEEEEcccc----------------cceEEEEEEEe
Confidence 99999999765555544443322 11223444445699999999995422 12367999999
Q ss_pred eeeCCCCeEEEEeccccccccccCC-CCCCcceEEEEEEeCCCccccccceeEEEEEecCCCCCCCcccccccccchhh-
Q 048368 527 IYDSETGVLCMVGCRDAGLKYQKSS-NNSMDCEISIRLQFPPLNAMTKGGFIRGRITSLRNKSDSLYFEPLFVSATSYY- 604 (904)
Q Consensus 527 VYD~~tG~LCMVGCR~v~s~~~~~~-~~~~DC~I~V~vqFP~~~Sir~~~~i~G~I~S~R~~~DPl~F~~l~~~~~~~Y- 604 (904)
||||+||+|||||||+++++++... |+++||+|+|+|||||+++ +.++++||+|+|+|+++|||||++++++++++|
T Consensus 541 vYD~~~G~lclVGCR~v~~~~~~~~~~~~~DC~I~V~vq~pp~~~-~~~~~~kg~I~S~R~~~DpL~F~~~~l~~~~~~~ 619 (909)
T PF11145_consen 541 VYDPKTGRLCLVGCRDVRLNWNISSNESSMDCEILVTVQFPPLDA-KVNPTIKGSISSTRDKSDPLYFEPLDLSTYPIYY 619 (909)
T ss_pred eeeCCCCeEEEEeccccccCccccccCCCCCeeEEEEEEcCCCCC-CCCCcEEEEEEeccCCCCCccccceeeeecccee
Confidence 9999999999999999988876443 6999999999999999999 788999999999999999999999999999965
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHhhhcccccchhhhcccCCCCceee
Q 048368 605 RILERRSIWRMDLELLMVLISKTLACIFVVFQLLYVKKHRDVLPFISLLMLVILTLGHMNLLVLNFEALFFQNEYPHSVL 684 (904)
Q Consensus 605 ~~q~~~~i~R~d~E~im~~~s~tl~c~fv~~QL~h~kk~~~~~P~iSlvML~vqaLGy~~pLvl~~EaLF~~~~~~~~~~ 684 (904)
++|++|+|||||||+||+++|+||+|+|+++||+|+|||||++|+||||||+|||||||+|||+||||||+.++++|++.
T Consensus 620 ~~q~~~~i~R~d~E~i~~~~s~tl~~~~~~~QL~~~k~~~~~~P~iSlvML~v~aLGy~~pLv~n~EaLf~~~~~~~~~~ 699 (909)
T PF11145_consen 620 RKQAEESIWRMDLEGIMRVISLTLSCVFIGLQLFHVKKHPDVLPYISLVMLGVQALGYMIPLVLNFEALFKSSHNRQNIF 699 (909)
T ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccchHhHHHHHHHHHhccchhhcCHHHHcCcCCCCceEE
Confidence 55999999999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred ecCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhccccccCccCccc--cccceEEEEehhHHHhhhheeeeeeccccccc
Q 048368 685 LRSGGWLEVHEVIVRVVTMVAFLLHCRLLQHSLSRRMRDNSLKALW--TAEKKALFLTVPVYLAGALIALFVNWRTSKTG 762 (904)
Q Consensus 685 ~~~~~~~e~ne~~vr~~tlvAflL~lRLlqlvw~aR~~~~~~~~~~--~~e~~vl~~~l~~y~~G~li~l~~h~~~~~~~ 762 (904)
+++++|+|+||++||++|||||||||||+|||||||+++++++++| ++||||||+|+|+|++|++|+|++|+.+++.+
T Consensus 700 ~~~~~w~e~~e~~vr~ltmvAflL~lRL~qlvw~aR~~~~~~~~~~~~~sek~vl~~~l~ly~~G~li~l~~h~~~~~~~ 779 (909)
T PF11145_consen 700 LDSGGWLEVNEVMVRLLTMVAFLLQLRLLQLVWSARIRDGARKPLEPWPSEKKVLYICLPLYIAGGLIALIVHASKTNSR 779 (909)
T ss_pred eecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCccceEEEEEeHHHHHHHHHhhhhhhhccccc
Confidence 9999999999999999999999999999999999999999999988 99999999999999999999999999876432
Q ss_pred ---cch-hccccccccchhhHHHHhhHHHhhccchhhHHHHHhhccCCCCccccceeeecceeeeccceeeeeecccccc
Q 048368 763 ---IMA-QSFLYNNHQHSLWGNLRSYAGLILDGFLLPQILLNIFHNSRENALSRFFYIGLTVVRLVPHAYDIYRAQNYVQ 838 (904)
Q Consensus 763 ---~~~-~~~~~~~~~~~~w~~l~~y~gLv~D~FLLPQIi~N~~~~s~~kpL~~~fYvG~T~vRllph~Yd~~r~~~~~~ 838 (904)
.+. .......+++++|+||++|+|||||||||||||+|++|++|+|||+++||+|+|++|||||+||++|+++++|
T Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~l~~y~GLv~D~FLLPQii~N~~~~~~~~~Ls~~fY~G~T~~Rllph~Yd~~r~~~~~~ 859 (909)
T PF11145_consen 780 RARREESYDSRISHQQHSWWEDLKSYAGLVLDGFLLPQIIGNAFWQSKVKPLSKSFYVGTTLVRLLPHVYDLYRAPNYVP 859 (909)
T ss_pred ccccccccccccccccccHHHHHHHhhhHHHhhhhHHHHHHHHHhccCCcccccceeehHHHHHHHHHHHhhccccccCc
Confidence 111 2235677789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-cceeeeCCCCCccccccchhhhHHHHHHHHHHHHhhhhCCceecc
Q 048368 839 EFD-GLYIYADPAADIYSTGWDVAILFVGLLFAAIIHFQQQFGGRCLLP 886 (904)
Q Consensus 839 ~~~-~s~~ya~p~~dfys~awdi~Ip~~a~llA~~v~lQQr~g~~~~~p 886 (904)
+|+ ++|+||||++||||+||||||||+|++||++||+||||||+||+|
T Consensus 860 ~~~~~~~~ya~~~~dfys~awDi~Ip~~a~llA~~v~~QQr~~~~~~~~ 908 (909)
T PF11145_consen 860 YFDDESYVYANPRMDFYSTAWDIVIPCGAVLLAALVYLQQRWGGRCILP 908 (909)
T ss_pred ccccccccccCccccccccccceeeehHHHHHHHHHHHHhhhCCeeecc
Confidence 999 999999999999999999999999999999999999999999997
No 2
>PF11145 DUF2921: Protein of unknown function (DUF2921); InterPro: IPR021319 This eukaryotic family of proteins has no known function.
Probab=100.00 E-value=9.5e-44 Score=427.27 Aligned_cols=271 Identities=20% Similarity=0.253 Sum_probs=221.5
Q ss_pred ccccCCCCeEEEEEEEEecCCCeeEEEEEeecccCCCCCCCccccCceEEEEEcCCcceeeecceEEEEEEeCCCCCCCC
Q 048368 296 YYRSFNPETTFVAEGSWDWKKNRLCVAACRILNTHDSLDNSSVEDCSIRLTLRFPAIWSIRASTSMSGQIWSNRALNDTG 375 (904)
Q Consensus 296 ~~~~g~~~~tlvaEG~Wd~ssgqLCMVGC~~l~s~~s~~~~~v~dC~i~L~LrfP~~~SI~~Rs~V~G~I~S~~~~~ds~ 375 (904)
..|||.+.++|.+||+|+|++|+|||||+++..+.++ .+...|.+|.|+||||+++|+++|. |.|+|+|++.++|++
T Consensus 109 ~~~pg~ssLsf~LeG~YSe~sg~LCMVGsgs~~s~~g--~~v~~~~~~vL~LryPk~~sLtsr~-V~G~LeS~n~~~d~~ 185 (909)
T PF11145_consen 109 YRWPGRSSLSFSLEGFYSEGSGVLCMVGSGSGYSNDG--PPVKLDDNAVLVLRYPKPSSLTSRF-VTGELESLNSKSDSA 185 (909)
T ss_pred ecCCCceEEEEEEEEEEEcCCCcEEEeccccccCCCC--CceeeecceEEEEcCCCcccccccc-eeEEEEecCCCCCcc
Confidence 3678889999999999999999999999997666554 2344778999999999999999999 999999999999999
Q ss_pred CcceeeecccCccccccCC--CceeecchhhcccccccCC---c---c------cccccCCCCCCCccCcceeEEEEecC
Q 048368 376 YFGRILFQSTDNEVLKVPG--LKYEYTEMEKVRNMSCLQK---K---P------LRNSLEKYPDGFSQEMNFGISVKISG 441 (904)
Q Consensus 376 yF~~I~f~s~~~~~~~~sg--~~Y~YT~ve~A~k~~c~~~---~---p------~~~kg~~fP~~~s~d~~f~~~L~~~~ 441 (904)
|||+| +++++++ .+|+|+++.++ |+.. + + ...++..+|+.+.+.+.-.|.|++..
T Consensus 186 YFd~V-------sLls~~~~~~~Y~Y~lv~~s----c~~~~~~d~~~~~~~~~~~~~~~~~~C~~L~~~~~~~f~l~y~~ 254 (909)
T PF11145_consen 186 YFDPV-------SLLSQLEGYSNYEYTLVSKS----CDPPPYGDGDVGDGSSLSDVYSGNFFCSILRRFLRGSFKLEYNW 254 (909)
T ss_pred cccee-------EEEecCCCccCceEEEcccc----CCCCcccccccccccccccccCCCCCChhhHhcCCCceEeEECC
Confidence 99999 9999997 69999776444 4321 1 0 13566788988866655569999988
Q ss_pred CCcccccccccccccccccCcccccccCcCCCccccccccccCCcceeeEEEEeccccccccCCccccccccCcccceeE
Q 048368 442 GKIAWGHALPIAVDDQISPLSESFISWSSSSTTSSVESNISSSKPLNISYKISFRPYYYLKLGGLESLFNISSSWERRVA 521 (904)
Q Consensus 442 ~~~~~g~a~P~~~G~~~~~~~~~~~~~~cs~~~~~v~~~~~~s~llnVSy~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (904)
+|++.+.|.|+...-...+..+.+++.+|+++ +++ +|+++|+..++++..+. ...++++++++
T Consensus 255 ~C~st~~~~~~~gp~~~~~~~m~~~~v~C~~~-g~v----------rv~~vF~~~~~~e~~~~------~~~r~gl~~~t 317 (909)
T PF11145_consen 255 DCNSTDACCSFGGPFGLLPVRMHMQQVRCEED-GAV----------RVSAVFRNVSPSEHYYP------ARPRTGLSNMT 317 (909)
T ss_pred CCCCcccccCCCCCcccCCceEEEEeeEecCC-CcE----------EEEEEEcCCCchhhccc------ccccccccCce
Confidence 89888777777654444555567799999985 444 55556665565544443 24577888999
Q ss_pred EEEEeeeeCCCCeEEEEeccccccccccCCCCCCcceEEEEEEeCCCccccccceeEEEEEecCC--CCCCCcccccc
Q 048368 522 IYAEGIYDSETGVLCMVGCRDAGLKYQKSSNNSMDCEISIRLQFPPLNAMTKGGFIRGRITSLRN--KSDSLYFEPLF 597 (904)
Q Consensus 522 IsAEGVYD~~tG~LCMVGCR~v~s~~~~~~~~~~DC~I~V~vqFP~~~Sir~~~~i~G~I~S~R~--~~DPl~F~~l~ 597 (904)
++|||+||+++|||||||||.++...+.......||+|+|++|||++||||+|++++|+|||+++ .+||++|+.+.
T Consensus 318 LvAEG~Wd~s~gqLCmvaCrv~~~~~s~~~~~v~dC~ir~sl~FPav~SIr~RS~v~G~I~s~~~~~~~~~~~f~~i~ 395 (909)
T PF11145_consen 318 LVAEGVWDSSSGQLCMVACRVGNSDDSLANAGVGDCSIRMSLWFPAVWSIRQRSIVVGQIWSNSQGSSNDPLYFSRIV 395 (909)
T ss_pred EEEEeeEcCCCCcEEEEeeeeccccccccccccCCCCceEEEEecCeEEEeecceEEEEEecCCccccCCCcchhhee
Confidence 99999999999999999999997765555567789999999999999999999999999999999 77999999987
No 3
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=9.8e-24 Score=233.92 Aligned_cols=289 Identities=19% Similarity=0.279 Sum_probs=202.3
Q ss_pred CCcceEEEEEEeCCCccccc--------cceeEEEEEecCCCCCCCcccccccccch-----hhHHHHhhhhhhhhHHHH
Q 048368 554 SMDCEISIRLQFPPLNAMTK--------GGFIRGRITSLRNKSDSLYFEPLFVSATS-----YYRILERRSIWRMDLELL 620 (904)
Q Consensus 554 ~~DC~I~V~vqFP~~~Sir~--------~~~i~G~I~S~R~~~DPl~F~~l~~~~~~-----~Y~~q~~~~i~R~d~E~i 620 (904)
..-|+|....|...++++.+ ...+.|-.++..-..+|.+|-++.++... .|.+.++. +.
T Consensus 230 e~~~N~~t~~qi~~~~s~eN~~~~~~~n~~q~~pl~~vsgl~yspDC~v~l~l~ntkg~~~vl~n~aVr~--------tl 301 (636)
T KOG0828|consen 230 EKHCNIETAAQISTLKSSENEFYNGDKNSYQKEPLMEVSGLVYSPDCFVPLTLNNTKGNVEVLYNKAVRY--------TL 301 (636)
T ss_pred HHhhhhHHHHHHHHhhhhhccccCCCcchhcCCceecccCcccCCCcCcceeeeccccchhhhhhhhHHH--------HH
Confidence 45688888888887776533 34566777776667789999999999885 26666666 33
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHH--hhhcccccch----hhhcccCCCCceeeecCCCcchhh
Q 048368 621 MVLISKTLACIFVVFQLLYVKKHRDVLPFISLLMLVILTL--GHMNLLVLNF----EALFFQNEYPHSVLLRSGGWLEVH 694 (904)
Q Consensus 621 m~~~s~tl~c~fv~~QL~h~kk~~~~~P~iSlvML~vqaL--Gy~~pLvl~~----EaLF~~~~~~~~~~~~~~~~~e~n 694 (904)
|..+...-+-+++.+|+.|-. |...-.+|++|+++||+ ||++.|.+.+ |.||.... +..++
T Consensus 302 l~~~~~~~~~~~Ll~q~~~~s--ps~v~rlSf~~i~mqa~mD~~Lall~lta~~vve~lylpfv--------taAF~--- 368 (636)
T KOG0828|consen 302 LYIFIVLSQIFLLLRQMRINS--PSHVQRLSFLTIAMQAGMDAYLALLFLTANAVVESLYLPFV--------TAAFF--- 368 (636)
T ss_pred HHHHHHHHHHHHHHHHHhhcC--chhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH--------HHHHH---
Confidence 444433444444556766532 77788999999999999 8999888776 66777642 22332
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhc---------cccccCccCccc-------cccceEEEEehhHHHhhhheeeeeeccc
Q 048368 695 EVIVRVVTMVAFLLHCRLLQHSLS---------RRMRDNSLKALW-------TAEKKALFLTVPVYLAGALIALFVNWRT 758 (904)
Q Consensus 695 e~~vr~~tlvAflL~lRLlqlvw~---------aR~~~~~~~~~~-------~~e~~vl~~~l~~y~~G~li~l~~h~~~ 758 (904)
+++ ++-++++|+|..+|| |-++..+..+.. +-|.+. |-.+ +.|+++.+++-.-.
T Consensus 369 ----~fV--~~siFemRYLlsI~k~q~~~~~~~a~Rp~T~~~~~n~~r~~~~~~e~s~-~g~l---~grf~fm~lv~~~~ 438 (636)
T KOG0828|consen 369 ----KFV--VFSIFEMRYLLSIWKVQNSNMPPPATRPSTSNSSNNNTRQSNASNENSP-WGIL---LGRFLFMYLVVCIA 438 (636)
T ss_pred ----HHH--HHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCccccCcccccccccCCc-chhh---HHhHHHHHHHHHHH
Confidence 333 666999999999999 544443322222 223332 1111 11222222221100
Q ss_pred cccccchhccccccccchhh----HHHHhhHH-HhhccchhhHHHHHhhccCCCCccccceeeecceeeeccceeeeeec
Q 048368 759 SKTGIMAQSFLYNNHQHSLW----GNLRSYAG-LILDGFLLPQILLNIFHNSRENALSRFFYIGLTVVRLVPHAYDIYRA 833 (904)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~w----~~l~~y~g-Lv~D~FLLPQIi~N~~~~s~~kpL~~~fYvG~T~vRllph~Yd~~r~ 833 (904)
. -....| ...-+|+- ++...||+|||+.|++.+-.+|||.+.|.+|+|++||+|++|-+.++
T Consensus 439 ~-------------l~s~~wp~q~r~yf~~iLif~~~SfWIPQIv~Nvvrg~SR~Pl~w~yIlG~Tv~Rl~~plyVF~~s 505 (636)
T KOG0828|consen 439 S-------------LYSAFWPVQFRNYFIPILIFMYYSFWIPQIVANVVRGDSRKPLHWYYILGMTVTRLAIPLYVFGCS 505 (636)
T ss_pred H-------------hhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCCcchhhhhhHhHHhhhcceEEEecc
Confidence 0 011234 23334454 44569999999999999655899999999999999999999999999
Q ss_pred cccccccccceeeeCCCCCccccccchhhhHHHHHHHHHHHHhhhhCCceecccccc--ccceEEeec
Q 048368 834 QNYVQEFDGLYIYADPAADIYSTGWDVAILFVGLLFAAIIHFQQQFGGRCLLPRRFR--ELEVYEKIP 899 (904)
Q Consensus 834 ~~~~~~~~~s~~ya~p~~dfys~awdi~Ip~~a~llA~~v~lQQr~g~~~~~p~~~~--~~~~ye~v~ 899 (904)
.++ +...|+ ++|.|-+.++++.++.++++|..+|+|||+||++. ++++|+++.
T Consensus 506 ~n~--------~r~~p~-----~~f~v~L~lwmlFQv~vLl~Qd~lGsR~FlPkk~lpe~YsY~r~l~ 560 (636)
T KOG0828|consen 506 ENF--------MRVEPK-----YFFAVGLVLWMLFQVLVLLVQDYLGSRCFLPKKFLPEKYSYHRRLQ 560 (636)
T ss_pred hhh--------hccCCc-----hhhHHHHHHHHHHHHHHHHHHhhcccccccchhhCccccccccccc
Confidence 998 566776 68999999999999999999999999999999986 567676654
No 4
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=31.44 E-value=20 Score=26.33 Aligned_cols=23 Identities=43% Similarity=0.613 Sum_probs=19.4
Q ss_pred hhhHHHHHhhccCCCCccccceee
Q 048368 793 LLPQILLNIFHNSRENALSRFFYI 816 (904)
Q Consensus 793 LLPQIi~N~~~~s~~kpL~~~fYv 816 (904)
.+|||+.|.-.++ .+-|+..|++
T Consensus 3 ~~PQi~~~~~~ks-~~glS~~~~~ 25 (32)
T smart00679 3 LLPQIIKNYRRKS-TEGLSILFVL 25 (32)
T ss_pred chhHHHHHHHcCC-cCcCCHHHHH
Confidence 5899999998887 7888888765
No 5
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=27.01 E-value=20 Score=38.54 Aligned_cols=82 Identities=21% Similarity=0.152 Sum_probs=0.0
Q ss_pred hhHHHHHhhccCCCCccccceeeecceeeeccceeeeeeccccccccccceeeeCCCCCccccccchhhhHHHHHHHHHH
Q 048368 794 LPQILLNIFHNSRENALSRFFYIGLTVVRLVPHAYDIYRAQNYVQEFDGLYIYADPAADIYSTGWDVAILFVGLLFAAII 873 (904)
Q Consensus 794 LPQIi~N~~~~s~~kpL~~~fYvG~T~vRllph~Yd~~r~~~~~~~~~~s~~ya~p~~dfys~awdi~Ip~~a~llA~~v 873 (904)
+|||+.|.-.++ ++-||..|+.=-++.=..--+|...+-.+- ...+.|.+.+|.- ..-|+++-+-++++.+++
T Consensus 20 ~PQi~~n~k~ks-~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~--~~~~~~~~~~~~v----~~edl~~ai~~~il~~l~ 92 (220)
T TIGR00951 20 YPQIIKNWRRKS-AEGLSFDFVMLNLVGFTAYVIFNFLQLYCW--SITNEFPLSSPGV----TQNDVFFTLHAILICFIV 92 (220)
T ss_pred hhHHHHHHhccc-cCCcCHHHHHHHHHHHHHHHHHHHHHhcch--hhhhccccccCCC----cHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhCCc
Q 048368 874 HFQQQFGGR 882 (904)
Q Consensus 874 ~lQQr~g~~ 882 (904)
+.|..+..+
T Consensus 93 ~~q~~~~~~ 101 (220)
T TIGR00951 93 LHQCGDYER 101 (220)
T ss_pred HHHHhhccc
No 6
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=23.13 E-value=2.7e+02 Score=35.82 Aligned_cols=137 Identities=16% Similarity=0.175 Sum_probs=73.1
Q ss_pred CCCcceEEEEEEeCCCccccccceeEEEEEecCCCCCCCcccccccccchhhHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 048368 553 NSMDCEISIRLQFPPLNAMTKGGFIRGRITSLRNKSDSLYFEPLFVSATSYYRILERRSIWRMDLELLMVLISKTLACIF 632 (904)
Q Consensus 553 ~~~DC~I~V~vqFP~~~Sir~~~~i~G~I~S~R~~~DPl~F~~l~~~~~~~Y~~q~~~~i~R~d~E~im~~~s~tl~c~f 632 (904)
...=|.|.+.+.+||+.. .++...+.+..+++....-.-|-|-.|+|-.++. +.|
T Consensus 425 inlF~~v~L~vE~p~~G~---------------------~~ps~~l~S~~L~~~~~~~~~~~~l~~vvf~l~~----~yf 479 (798)
T KOG3599|consen 425 INLFCVVTLRVEFPPTGG---------------------VLPSLQLESFKLLRYVSAGSSLIMLCEVVFLLFV----LYF 479 (798)
T ss_pred CCeeEEEEEEEEecCccc---------------------ccccceEEEEehhhhhccccHHHHHHHHHHHHHH----HHH
Confidence 345788889999999866 2223444444444444444455566666644433 455
Q ss_pred HHHhhhhhc-c-------CCCCcchHHHHHHHHHHHhhhcccc-cchhhhc--ccCCCCceeeecCCCcchhhhhHHHHH
Q 048368 633 VVFQLLYVK-K-------HRDVLPFISLLMLVILTLGHMNLLV-LNFEALF--FQNEYPHSVLLRSGGWLEVHEVIVRVV 701 (904)
Q Consensus 633 v~~QL~h~k-k-------~~~~~P~iSlvML~vqaLGy~~pLv-l~~EaLF--~~~~~~~~~~~~~~~~~e~ne~~vr~~ 701 (904)
+.-|+.-++ + .+=..-..+|++|.+.+++.++--. +....+= .......+..++ ..-.+|-+..=++
T Consensus 480 ~~~e~~~i~~~~~~~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~~~~f~~F~--~~a~~~~~~~~l~ 557 (798)
T KOG3599|consen 480 AVAEGLKIWIHRLGRYVRSKWNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERASPRTFIDFT--EVAQWNIAARNLL 557 (798)
T ss_pred HHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCHH--HHHHHHHHHHHHH
Confidence 444544444 2 2223346889999999999888776 4444432 111111122221 1112233333334
Q ss_pred HHHHHHHHHHHHHHH
Q 048368 702 TMVAFLLHCRLLQHS 716 (904)
Q Consensus 702 tlvAflL~lRLlqlv 716 (904)
....||.++++.+..
T Consensus 558 a~lvfl~tiK~~k~l 572 (798)
T KOG3599|consen 558 AFLVFLTTIKLWKVL 572 (798)
T ss_pred HHHHHHHHHHHHHhc
Confidence 456677777776553
No 7
>PF06191 DUF995: Protein of unknown function (DUF995); InterPro: IPR009337 This is a family of uncharacterised Proteobacteria proteins.
Probab=21.24 E-value=93 Score=31.72 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=21.3
Q ss_pred CCCeEEEEEEEEecC-CCeeEEEEEeec
Q 048368 301 NPETTFVAEGSWDWK-KNRLCVAACRIL 327 (904)
Q Consensus 301 ~~~~tlvaEG~Wd~s-sgqLCMVGC~~l 327 (904)
..+..-.+||.|.-+ .|||||.+---.
T Consensus 64 ~~~~~s~g~GrW~Vt~~GklC~~a~W~~ 91 (145)
T PF06191_consen 64 EKGSESYGEGRWFVTDNGKLCFRATWHS 91 (145)
T ss_pred CCCcceeeeeEEEECCCCCEEEEeEEEC
Confidence 345677899999977 579999998743
No 8
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=14.38 E-value=1.1e+02 Score=24.93 Aligned_cols=18 Identities=6% Similarity=-0.045 Sum_probs=14.0
Q ss_pred cchhhhHHHHHHHHHHHH
Q 048368 858 WDVAILFVGLLFAAIIHF 875 (904)
Q Consensus 858 wdi~Ip~~a~llA~~v~l 875 (904)
=-|+||++.++++++++|
T Consensus 15 ~~VvVPV~vI~~vl~~~l 32 (40)
T PF08693_consen 15 VGVVVPVGVIIIVLGAFL 32 (40)
T ss_pred EEEEechHHHHHHHHHHh
Confidence 348999988888877665
No 9
>PF06507 Auxin_resp: Auxin response factor; InterPro: IPR010525 This pattern represents a conserved region of auxin-responsive transcription factors. The plant hormone auxin (indole-3-acetic acid) can regulate the gene expression of several families, including Aux/IAA, GH3 and SAUR families. Two related families of proteins, Aux/IAA proteins (IPR003311 from INTERPRO) and the auxin response factors (ARF), are key regulators of auxin-modulated gene expression []. There are multiple ARF proteins, some of which activate, while others repress transcription. ARF proteins bind to auxin-responsive cis-acting promoter elements (AuxREs) using an N-terminal DNA-binding domain. It is thought that Aux/IAA proteins activate transcription by modifying ARF activity through the C-terminal protein-protein interaction domains (IPR011525 from INTERPRO) found in both Aux/IAA and ARF proteins. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0009725 response to hormone stimulus, 0005634 nucleus
Probab=14.21 E-value=3.2e+02 Score=25.41 Aligned_cols=39 Identities=13% Similarity=0.424 Sum_probs=27.3
Q ss_pred CCCCcceEEEEEEeCCCccccccceeEEEEEecCCCCCCCcc
Q 048368 552 NNSMDCEISIRLQFPPLNAMTKGGFIRGRITSLRNKSDSLYF 593 (904)
Q Consensus 552 ~~~~DC~I~V~vqFP~~~Sir~~~~i~G~I~S~R~~~DPl~F 593 (904)
+..--.+.+++.+|-.-++ ..+.. .|+|..+.+. ||...
T Consensus 36 ~~~~~~GmRfkM~fE~eds-~~~~~-~GtI~~v~~~-dp~~w 74 (83)
T PF06507_consen 36 NHPWSVGMRFKMRFETEDS-SERRW-QGTIVGVSDL-DPIRW 74 (83)
T ss_pred cCCCCCCcEEEEEeccCCC-cccee-eeEEeEeecc-CCCCC
Confidence 3445567789999988887 33333 9999998764 78653
No 10
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=14.17 E-value=4.5e+02 Score=30.64 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcccc
Q 048368 694 HEVIVRVVTMVAFLLHCRLLQHSLSRRM 721 (904)
Q Consensus 694 ne~~vr~~tlvAflL~lRLlqlvw~aR~ 721 (904)
.+...-+..+..|++.+|+++...-.|+
T Consensus 293 ~~~~~~l~a~~vfl~~lrll~~l~f~~~ 320 (425)
T PF08016_consen 293 DQLYRYLLAFLVFLLWLRLLKLLRFNRR 320 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeecch
Confidence 3444555777888999999987654443
Done!