Query 048368
Match_columns 904
No_of_seqs 136 out of 147
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 15:22:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048368.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048368hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y4e_A Sodium/hydrogen exchang 23.0 12 0.0004 26.8 -0.9 17 792-808 10-26 (27)
2 2ebo_A Ebola virus envelope gl 16.9 43 0.0015 28.2 1.1 15 870-884 32-46 (74)
3 3nfg_A DNA-directed RNA polyme 8.5 1.8E+02 0.006 26.8 2.4 18 526-543 77-94 (102)
4 1ebo_A Ebola virus envelope pr 7.4 1.3E+02 0.0044 27.9 1.0 14 871-884 70-83 (131)
5 1y0g_A Protein YCEI; lipid bin 6.9 4.4E+02 0.015 26.0 4.8 27 92-120 104-130 (191)
6 3nff_A RNA polymerase I subuni 6.3 2.5E+02 0.0086 26.6 2.4 15 526-540 77-91 (122)
7 2kkt_A Ataxin-7-like protein 3 5.9 1E+02 0.0035 27.4 -0.5 14 525-538 17-30 (84)
8 2jwo_A RAG-2, V(D)J recombinat 5.4 2.7E+02 0.0091 24.5 1.8 25 151-178 27-51 (82)
9 2fgs_A Putative periplasmic pr 5.3 7.6E+02 0.026 24.0 5.4 28 92-120 80-107 (179)
10 2r5i_A L1 protein; HPV18, pent 5.0 2.1E+02 0.0073 32.2 1.2 15 528-542 130-144 (428)
No 1
>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane protein; HET: HSL; NMR {Homo sapiens}
Probab=23.02 E-value=12 Score=26.78 Aligned_cols=17 Identities=35% Similarity=0.366 Sum_probs=12.4
Q ss_pred chhhHHHHHhhccCCCC
Q 048368 792 FLLPQILLNIFHNSREN 808 (904)
Q Consensus 792 FLLPQIi~N~~~~s~~k 808 (904)
+|||+||.|+--..+.|
T Consensus 10 ~LLPPII~~aGy~l~~r 26 (27)
T 1y4e_A 10 FLLPPIILDAGYFLPLR 26 (27)
T ss_dssp HHSCCSSHHHHTTGGGG
T ss_pred eccCccEeeccccccCC
Confidence 68999999986554443
No 2
>2ebo_A Ebola virus envelope glycoprotein; filovirus, GP2, coat protein; 1.90A {Zaire ebolavirus - mayinga} SCOP: h.3.2.1
Probab=16.92 E-value=43 Score=28.22 Aligned_cols=15 Identities=40% Similarity=0.731 Sum_probs=11.5
Q ss_pred HHHHHHhhhhCCcee
Q 048368 870 AAIIHFQQQFGGRCL 884 (904)
Q Consensus 870 A~~v~lQQr~g~~~~ 884 (904)
-++=|+-|||||.|-
T Consensus 32 ~aidfll~rwggtc~ 46 (74)
T 2ebo_A 32 KAIDFLLQRWGGTCH 46 (74)
T ss_dssp HHHHHHHGGGTCHHH
T ss_pred HHHHHHHHHhCCcce
Confidence 356788999998754
No 3
>3nfg_A DNA-directed RNA polymerase I subunit RPA49; triple barrel, transcription, dimerization; 2.51A {Candida glabrata}
Probab=8.49 E-value=1.8e+02 Score=26.82 Aligned_cols=18 Identities=22% Similarity=0.530 Sum_probs=14.3
Q ss_pred eeeeCCCCeEEEEecccc
Q 048368 526 GIYDSETGVLCMVGCRDA 543 (904)
Q Consensus 526 GVYD~~tG~LCMVGCR~v 543 (904)
|||||+||+|=++-=+-+
T Consensus 77 gVyDp~t~~lel~~Apl~ 94 (102)
T 3nfg_A 77 GLYDKQSGKINLYRAPVV 94 (102)
T ss_dssp EEEETTTTEEEEEEECEE
T ss_pred EEEcCCCCeEEEEEecce
Confidence 899999999987655433
No 4
>1ebo_A Ebola virus envelope protein chimera consisting of A fragment of GCN4 zipper cloned...; membrane fusion subunit, viral protein; 3.00A {Ebola virus SP} SCOP: h.3.2.1
Probab=7.35 E-value=1.3e+02 Score=27.86 Aligned_cols=14 Identities=43% Similarity=0.793 Sum_probs=10.6
Q ss_pred HHHHHhhhhCCcee
Q 048368 871 AIIHFQQQFGGRCL 884 (904)
Q Consensus 871 ~~v~lQQr~g~~~~ 884 (904)
|+=||=|||||.|-
T Consensus 70 AIDFLL~RWGGTC~ 83 (131)
T 1ebo_A 70 AIDFLLQRWGGTCH 83 (131)
T ss_dssp HHHHHTGGGTCHHH
T ss_pred HHHHHHHHhCCcce
Confidence 56688899998753
No 5
>1y0g_A Protein YCEI; lipid binding protein, lipocalin, cofactor, coenzyme, dehydrogenase, hydrolase, predicted, structural genomics; HET: 8PP; 2.20A {Escherichia coli} SCOP: b.61.6.1
Probab=6.90 E-value=4.4e+02 Score=25.97 Aligned_cols=27 Identities=15% Similarity=0.340 Sum_probs=20.5
Q ss_pred eeEEEecceeecCCCcEEEEEEEEEEecc
Q 048368 92 LLSFHTQNVYTTNAEGVFKFEGNLHFYNS 120 (904)
Q Consensus 92 sfsf~~~~v~rT~~~~v~~v~atL~l~~~ 120 (904)
...|...++..+. ++ ++|+|+|||.|-
T Consensus 104 ~atF~st~v~~~g-~~-~~v~G~LTi~Gv 130 (191)
T 1y0g_A 104 QATFTSTSVKKDG-DE-LDITGDLTLNGV 130 (191)
T ss_dssp EEEEEEEEEEEET-TE-EEEEEEEEETTE
T ss_pred eEEEEEEEEEEcC-CC-EEEEEEEEECCE
Confidence 3667766676554 45 999999999994
No 6
>3nff_A RNA polymerase I subunit A49; tripple barrel, transcription, dimerization; 3.24A {Candida glabrata}
Probab=6.32 E-value=2.5e+02 Score=26.61 Aligned_cols=15 Identities=27% Similarity=0.718 Sum_probs=12.8
Q ss_pred eeeeCCCCeEEEEec
Q 048368 526 GIYDSETGVLCMVGC 540 (904)
Q Consensus 526 GVYD~~tG~LCMVGC 540 (904)
|||||+||+|=++-=
T Consensus 77 gVyDP~T~~leL~~A 91 (122)
T 3nff_A 77 GLYDKQSGKINLYRA 91 (122)
T ss_dssp EEEETTTTEEEEEEC
T ss_pred EEEcCCCCeEEEEEc
Confidence 899999999987653
No 7
>2kkt_A Ataxin-7-like protein 3; zinc finger, transcription, activator, alternative splicing, chromatin regulator, metal-binding, nucleus; NMR {Homo sapiens}
Probab=5.90 E-value=1e+02 Score=27.36 Aligned_cols=14 Identities=21% Similarity=0.441 Sum_probs=11.7
Q ss_pred EeeeeCCCCeEEEE
Q 048368 525 EGIYDSETGVLCMV 538 (904)
Q Consensus 525 EGVYD~~tG~LCMV 538 (904)
=||++++||++|-.
T Consensus 17 CGVi~~~t~k~CTR 30 (84)
T 2kkt_A 17 CGVISEHTKKMCTR 30 (84)
T ss_dssp CCCCBTTTTBSCCS
T ss_pred cceEcCCCCCcccc
Confidence 38999999999953
No 8
>2jwo_A RAG-2, V(D)J recombination-activating protein 2; phosphoinositide signaling, PHD domain, DNA recombination, DNA-binding, endonuclease, hydrolase; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 2v83_A* 2v85_A* 2v86_A* 2v87_A* 2v88_A* 2v89_A*
Probab=5.44 E-value=2.7e+02 Score=24.49 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=19.1
Q ss_pred ceeecCCCceeeeccCCcccCCCceeec
Q 048368 151 GFWSKSSGKLCMVGSGTSYSPEGNLLHH 178 (904)
Q Consensus 151 GfwS~ssg~LCMVGsgs~~~~~g~~~~~ 178 (904)
-|||..--++||.++|++ +|-.+|-
T Consensus 27 p~ystel~kpami~cs~g---~ghwvha 51 (82)
T 2jwo_A 27 PFYSTELNKPAMIYCSHG---DGHWVHA 51 (82)
T ss_dssp CCSSSCSSSCCCEECCSS---SCCEECS
T ss_pred ccccchhcchhhhhcCCC---cchHHHH
Confidence 377888899999998775 5766553
No 9
>2fgs_A Putative periplasmic protein; lipid binding protein, structural genomics, protein structure initiative, PSI, nysgxrc; 2.90A {Campylobacter jejuni}
Probab=5.33 E-value=7.6e+02 Score=24.04 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=21.3
Q ss_pred eeEEEecceeecCCCcEEEEEEEEEEecc
Q 048368 92 LLSFHTQNVYTTNAEGVFKFEGNLHFYNS 120 (904)
Q Consensus 92 sfsf~~~~v~rT~~~~v~~v~atL~l~~~ 120 (904)
...|...++..+. ++-++|+|+|||.|-
T Consensus 80 ~atF~st~v~~~g-~~~~~v~G~LTi~Gv 107 (179)
T 2fgs_A 80 DMTFTMKKYEKID-NEKGKMTGTLTIAGV 107 (179)
T ss_dssp EEEEEEEEEEESS-SSEEEEEEEEEETTE
T ss_pred EEEEEEEEEEECC-CceEEEEEEEEECcE
Confidence 3677766676554 568999999999984
No 10
>2r5i_A L1 protein; HPV18, pentamer, structure, type specific epitope, capsid, capsid protein, virion; 3.40A {Human papillomavirus type 18} PDB: 3ofl_A*
Probab=4.95 E-value=2.1e+02 Score=32.19 Aligned_cols=15 Identities=33% Similarity=0.820 Sum_probs=13.4
Q ss_pred eeCCCCeEEEEeccc
Q 048368 528 YDSETGVLCMVGCRD 542 (904)
Q Consensus 528 YD~~tG~LCMVGCR~ 542 (904)
.|||.-|||+|||.=
T Consensus 130 ~DpKQ~Ql~ivGC~P 144 (428)
T 2r5i_A 130 VDYKQTQLCILGCAP 144 (428)
T ss_dssp EECCEEEEEEEESSC
T ss_pred cCccceeEEEEeccC
Confidence 589999999999974
Done!