Query 048368
Match_columns 904
No_of_seqs 136 out of 147
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 15:22:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048368.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048368hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gtlo1 b.61.7.1 (O:101-222) E 22.9 1.5E+02 0.011 25.9 8.6 61 87-164 19-80 (122)
2 d2gtln1 b.61.7.1 (N:102-229) E 10.9 1.9E+02 0.014 25.4 6.0 57 89-162 23-80 (128)
3 d2bwqa1 b.7.1.2 (A:729-853) Re 10.0 2.7E+02 0.02 22.7 6.7 41 520-567 3-45 (125)
4 d1dqva2 b.7.1.2 (A:425-569) Sy 6.7 1.5E+02 0.011 25.0 3.6 24 519-544 8-33 (145)
5 d1dqva1 b.7.1.2 (A:295-424) Sy 6.6 2.8E+02 0.02 22.9 5.2 40 519-563 6-47 (130)
6 d2gtlm1 b.61.7.1 (M:102-225) H 6.2 4.7E+02 0.034 22.5 6.5 59 87-163 21-80 (124)
7 d1xioa_ f.13.1.1 (A:) Sensory 5.8 2.1E+02 0.015 26.7 4.2 48 615-662 1-51 (226)
8 d1dzla_ b.121.6.1 (A:) Papillo 5.1 94 0.0069 32.5 1.1 15 528-542 130-144 (455)
9 d1wuba_ b.61.6.1 (A:) Polyisop 5.0 3.2E+02 0.023 24.1 4.7 27 93-120 80-106 (176)
10 d2cm5a1 b.7.1.2 (A:541-677) C2 4.5 4.5E+02 0.033 21.3 5.3 64 527-599 9-74 (137)
No 1
>d2gtlo1 b.61.7.1 (O:101-222) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}
Probab=22.90 E-value=1.5e+02 Score=25.87 Aligned_cols=61 Identities=10% Similarity=0.152 Sum_probs=43.4
Q ss_pred cCCcceeEEEecceeecC-CCcEEEEEEEEEEeccccCCCcccccccccCCCccCCCceeEEEEeceeecCCCceeeec
Q 048368 87 SNKHNLLSFHTQNVYTTN-AEGVFKFEGNLHFYNSYHFGHGRTYGHSFFSPLRTGDDSALSFSLKGFWSKSSGKLCMVG 164 (904)
Q Consensus 87 ~~~~rsfsf~~~~v~rT~-~~~v~~v~atL~l~~~r~~~~~~~~~~~~~~~~~~~~~~s~sF~L~GfwS~ssg~LCMVG 164 (904)
+..|+-+.+.-.++-|-. =|...+|.|+|.++-.+. ...++.+..++|||+-.+-+|-|-.
T Consensus 19 ~r~p~~m~i~Its~~r~~~F~s~~~v~a~v~~~~~~~-----------------g~~~~~s~~~~G~Y~~g~~~L~l~p 80 (122)
T d2gtlo1 19 KRRPEHMTLAFESSSIAAFFTPIADLHVHIEIESETD-----------------EDESEVSMPADGEYSFADHRLTIHP 80 (122)
T ss_dssp SSCCSEEEEEEEEEEECTTCTTEEEEEEEEEEECCCS-----------------SCCCEEEEEEEEEEETTTTEEEECC
T ss_pred cCCCCeEEEEEEecccccccCccceEEEEEEEEEecC-----------------CceEEEEeeeeEEEeccceEEEEcC
Confidence 346666777655544433 358899999999984333 1236789999999999888887765
No 2
>d2gtln1 b.61.7.1 (N:102-229) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}
Probab=10.88 E-value=1.9e+02 Score=25.40 Aligned_cols=57 Identities=14% Similarity=0.218 Sum_probs=37.6
Q ss_pred CcceeEEEecceeecC-CCcEEEEEEEEEEeccccCCCcccccccccCCCccCCCceeEEEEeceeecCCCceee
Q 048368 89 KHNLLSFHTQNVYTTN-AEGVFKFEGNLHFYNSYHFGHGRTYGHSFFSPLRTGDDSALSFSLKGFWSKSSGKLCM 162 (904)
Q Consensus 89 ~~rsfsf~~~~v~rT~-~~~v~~v~atL~l~~~r~~~~~~~~~~~~~~~~~~~~~~s~sF~L~GfwS~ssg~LCM 162 (904)
.|+-+.+.-.++-|-. =|...+|.|++.+.-.+. ...++.++.++|||+-.+-+|-|
T Consensus 23 ~p~~~~v~Its~~~~~~F~s~~~vka~v~~~~~~~-----------------g~~~~~sl~~~G~Y~fg~~~L~l 80 (128)
T d2gtln1 23 EDHVTRITITASKRRKFFTARIWLRALVESELERH-----------------GENVTSSFNAKGYYNFASRRLIL 80 (128)
T ss_dssp CSEEEEEEEEEEECCTTCTTCEEEEEEEECEEECS-----------------SSEEECCEEEEEEEETTTTEEEE
T ss_pred CCCeEEEEEEeccccccccccccEEEEEEEEEEcC-----------------CceEEEeeeeEEEEeccceEEEE
Confidence 5666666644443332 346788999988874433 12367789999999987776655
No 3
>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.95 E-value=2.7e+02 Score=22.71 Aligned_cols=41 Identities=17% Similarity=0.298 Sum_probs=26.7
Q ss_pred eEEEEEeeeeCCCCeEEE--EeccccccccccCCCCCCcceEEEEEEeCC
Q 048368 520 VAIYAEGIYDSETGVLCM--VGCRDAGLKYQKSSNNSMDCEISIRLQFPP 567 (904)
Q Consensus 520 ~~IsAEGVYD~~tG~LCM--VGCR~v~s~~~~~~~~~~DC~I~V~vqFP~ 567 (904)
..|+.+ ||+.+++|.+ +.||++... +.+..|+--|++.+-|
T Consensus 3 l~l~l~--y~~~~~~L~V~V~~a~~L~~~-----~~~~~~dpyVkv~l~~ 45 (125)
T d2bwqa1 3 LSIKLW--FDKVGHQLIVTILGAKDLPSR-----EDGRPRNPYVKIYFLP 45 (125)
T ss_dssp EEEEEE--EETTTTEEEEEEEEEESCCCC-----TTSCCBCEEEEEEEES
T ss_pred EEEEEE--EECCCCEEEEEEEEeECCCCc-----CCCCCCCEEEEEEEeC
Confidence 355555 9999999987 888888432 2334555555555533
No 4
>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.73 E-value=1.5e+02 Score=25.04 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=18.0
Q ss_pred eeEEEEEeeeeCCCCeEEE--Eeccccc
Q 048368 519 RVAIYAEGIYDSETGVLCM--VGCRDAG 544 (904)
Q Consensus 519 ~~~IsAEGVYD~~tG~LCM--VGCR~v~ 544 (904)
+..++. -|||.+|+|++ +.||++.
T Consensus 8 ~l~~sl--~Y~~~~~~L~V~V~~a~nL~ 33 (145)
T d1dqva2 8 ELNFSL--CYLPTAGLLTVTIIKASNLK 33 (145)
T ss_dssp EEEEEE--EEETTTTEEEEEEEEEESCC
T ss_pred EEEEEE--EEcCCCCEEEEEEEEEeCCC
Confidence 445554 58999999987 7888884
No 5
>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.63 E-value=2.8e+02 Score=22.86 Aligned_cols=40 Identities=25% Similarity=0.222 Sum_probs=25.4
Q ss_pred eeEEEEEeeeeCCCCeE--EEEeccccccccccCCCCCCcceEEEEE
Q 048368 519 RVAIYAEGIYDSETGVL--CMVGCRDAGLKYQKSSNNSMDCEISIRL 563 (904)
Q Consensus 519 ~~~IsAEGVYD~~tG~L--CMVGCR~v~s~~~~~~~~~~DC~I~V~v 563 (904)
+..++++ ||+++++| .++.|+++... +..+..|+=+.|++
T Consensus 6 ~l~~sl~--y~~~~~~L~V~V~~a~~L~~~---~~~g~~dpyv~v~l 47 (130)
T d1dqva1 6 RISFALR--YLYGSDQLVVRILQALDLPAK---DSNGFSDPYVKIYL 47 (130)
T ss_dssp EEEEEEE--CCSSSCEEEEEEEEEECCCCC---STTSCCCEEEEEEC
T ss_pred EEEEEEE--EECCCCEEEEEEEeeeCCccc---cCCCCcceEEEEEE
Confidence 5567776 99999999 56788888432 22333455555443
No 6
>d2gtlm1 b.61.7.1 (M:102-225) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}
Probab=6.18 E-value=4.7e+02 Score=22.53 Aligned_cols=59 Identities=12% Similarity=0.154 Sum_probs=37.6
Q ss_pred cCCcceeEEEecceeecC-CCcEEEEEEEEEEeccccCCCcccccccccCCCccCCCceeEEEEeceeecCCCceeee
Q 048368 87 SNKHNLLSFHTQNVYTTN-AEGVFKFEGNLHFYNSYHFGHGRTYGHSFFSPLRTGDDSALSFSLKGFWSKSSGKLCMV 163 (904)
Q Consensus 87 ~~~~rsfsf~~~~v~rT~-~~~v~~v~atL~l~~~r~~~~~~~~~~~~~~~~~~~~~~s~sF~L~GfwS~ssg~LCMV 163 (904)
+..|+-+.+.-.++-|-. =|...+|.|++.+.-.+- ..+..+-.++|||+-.+-+|-|-
T Consensus 21 ~r~p~~m~i~Its~~r~~~F~s~~~v~a~v~~~~~~~------------------~~~~~s~~~~G~Y~fg~~~L~l~ 80 (124)
T d2gtlm1 21 DLNPDHAIVTITAAHRKSFFPNRVWLRATLSYELDEH------------------DHTVSTTQLRGFYNFGKRELLLA 80 (124)
T ss_dssp SCCSEEEEEEEEEECCCTTCTTBCCEEEEEEEESCTT------------------TCCEEEEEEEEEEETTTTEEEEE
T ss_pred cCCCCeEEEEEEeceeccccCccceEEEEEEEEEccC------------------CeEEEeeeeeEEEeccccEEEEc
Confidence 336666667655544433 347889999999752111 11344569999999887777654
No 7
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=5.76 E-value=2.1e+02 Score=26.68 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=29.8
Q ss_pred hhHHHH---HHHHHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHhh
Q 048368 615 MDLELL---MVLISKTLACIFVVFQLLYVKKHRDVLPFISLLMLVILTLGH 662 (904)
Q Consensus 615 ~d~E~i---m~~~s~tl~c~fv~~QL~h~kk~~~~~P~iSlvML~vqaLGy 662 (904)
||+|++ +.+..++++.++...+....++.....-.++.+.-++-++.|
T Consensus 1 m~~~s~~~wv~~~~m~~~~~~f~~~~~~~~~~~r~~~~~~~~I~~iA~~~Y 51 (226)
T d1xioa_ 1 MNLESLLHWIYVAGMTIGALHFWSLSRNPRGVPQYEYLVAMFIPIWSGLAY 51 (226)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CchHhHHHHHHHHHHHHHHHHHHHHHccCCccchhhHHHHHHHHHHHHHHH
Confidence 788888 566667777777666666555554444445544445666666
No 8
>d1dzla_ b.121.6.1 (A:) Papillomavirus L1 protein {Human papillomavirus type 16 [TaxId: 333760]}
Probab=5.09 E-value=94 Score=32.53 Aligned_cols=15 Identities=33% Similarity=0.948 Sum_probs=13.4
Q ss_pred eeCCCCeEEEEeccc
Q 048368 528 YDSETGVLCMVGCRD 542 (904)
Q Consensus 528 YD~~tG~LCMVGCR~ 542 (904)
.|||.-|||+|||.=
T Consensus 130 ~DpKQ~Ql~ivGC~P 144 (455)
T d1dzla_ 130 MDYKQTQLCLIGCKP 144 (455)
T ss_dssp EBCCEEEEEEEESSC
T ss_pred cCccceEEEEEeccC
Confidence 589999999999974
No 9
>d1wuba_ b.61.6.1 (A:) Polyisoprenoid-binding protein TTHA0802 (TT1927B) {Thermus thermophilus [TaxId: 274]}
Probab=4.96 E-value=3.2e+02 Score=24.15 Aligned_cols=27 Identities=15% Similarity=0.386 Sum_probs=20.4
Q ss_pred eEEEecceeecCCCcEEEEEEEEEEecc
Q 048368 93 LSFHTQNVYTTNAEGVFKFEGNLHFYNS 120 (904)
Q Consensus 93 fsf~~~~v~rT~~~~v~~v~atL~l~~~ 120 (904)
..|...++..+. ++-++|+|+||+.|-
T Consensus 80 ~~F~st~i~~~~-~~~~~v~G~LTi~Gv 106 (176)
T d1wuba_ 80 IRFVSTQIEPLG-GNRYRIQGNLTIRDI 106 (176)
T ss_dssp EEEEEEEEEEEE-TTEEEEEEEEEETTE
T ss_pred eEEEEEEEEEec-CCeEEEEEEEEECcc
Confidence 567767776553 566899999999994
No 10
>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=4.54 E-value=4.5e+02 Score=21.31 Aligned_cols=64 Identities=16% Similarity=0.277 Sum_probs=32.6
Q ss_pred eeeCCCCeEEE--EeccccccccccCCCCCCcceEEEEEEeCCCccccccceeEEEEEecCCCCCCCcccccccc
Q 048368 527 IYDSETGVLCM--VGCRDAGLKYQKSSNNSMDCEISIRLQFPPLNAMTKGGFIRGRITSLRNKSDSLYFEPLFVS 599 (904)
Q Consensus 527 VYD~~tG~LCM--VGCR~v~s~~~~~~~~~~DC~I~V~vqFP~~~Sir~~~~i~G~I~S~R~~~DPl~F~~l~~~ 599 (904)
-|++++|+|.. +.||++... +..+..|+-+.|.+. | -.. + ..+-+-...+...+|.+=+.+.+.
T Consensus 9 ~Y~~~~~~L~V~v~~a~nL~~~---~~~~~~dpyv~v~l~-~-~~~-~---~~~~kT~v~~~t~~P~wne~f~f~ 74 (137)
T d2cm5a1 9 MYSTQQGGLIVGIIRCVHLAAM---DANGYSDPFVKLWLK-P-DMG-K---KAKHKTQIKKKTLNPEFNEEFFYD 74 (137)
T ss_dssp EEETTTTEEEEEEEEEESCCCC---STTSCCCEEEEEEEE-T-C-------CCEEECCCCCSCSSCEEEEEEEEE
T ss_pred EEECCCCEEEEEEEEEECCCCC---CCCCCcCeEEEEEEE-c-CCc-c---ceeecCEeEcCCCCCccceEEEEE
Confidence 48999999876 777777321 122335666666553 2 211 0 111111222333478876665553
Done!