BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048375
(236 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KVN|X Chain X, Crystal Structure Of The Full-Length Autotransporter Esta
From Pseudomonas Aeruginosa
pdb|3KVN|A Chain A, Crystal Structure Of The Full-Length Autotransporter Esta
From Pseudomonas Aeruginosa
Length = 632
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 86/207 (41%), Gaps = 36/207 (17%)
Query: 39 IFIISIGSNDYISNYPATLLHDTNKRFARLLTSKLSHQLQRLYNLGARKIVVSEIGPIGC 98
++ I+ G ND++ +L+D A+ +L +Q L GAR IVV + +G
Sbjct: 149 LYYITGGGNDFLQ---GRILNDVQ---AQQAAGRLVDSVQALQQAGARYIVVWLLPDLGL 202
Query: 99 VPAITSQNKHKGKCVEHKNRLVAEYNSMLPAMLQNLTSSLQGSSFLNGHAYRLAYDAIIN 158
PA G ++L +N+ L A L S G++ + + L + + N
Sbjct: 203 TPAT-----FGGPLQPFASQLSGTFNAELTAQL-----SQAGANVIPLNIPLLLKEGMAN 252
Query: 159 PSNYGKGWFKD------ASNPCCKTWLSGIEGCIPFVEPCDRRDKYYFWDGYHPSEIVYS 212
P+++G ++ + N C GI G P +P K F D HP +
Sbjct: 253 PASFGLAADQNLIGTCFSGNGCTMNPTYGINGSTP--DPS----KLLFNDSVHP-----T 301
Query: 213 LFASRCINNASF---CSPFSLKELVKM 236
+ R I + ++ +P+ L L +M
Sbjct: 302 ITGQRLIADYTYSLLSAPWELTLLPEM 328
>pdb|2XR9|A Chain A, Crystal Structure Of Autotaxin (Enpp2)
Length = 827
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 32/68 (47%)
Query: 129 AMLQNLTSSLQGSSFLNGHAYRLAYDAIINPSNYGKGWFKDASNPCCKTWLSGIEGCIPF 188
+++ S G + ++G + YD + + + K + + +S P + S I C+ F
Sbjct: 683 VLVKKYASERNGVNVISGPIFDYNYDGLRDTEDEIKQYVEGSSIPVPTHYYSIITSCLDF 742
Query: 189 VEPCDRRD 196
+P D+ D
Sbjct: 743 TQPADKCD 750
>pdb|2XRG|A Chain A, Crystal Structure Of Autotaxin (Enpp2) In Complex With The
Ha155 Boronic Acid Inhibitor
Length = 862
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 32/68 (47%)
Query: 129 AMLQNLTSSLQGSSFLNGHAYRLAYDAIINPSNYGKGWFKDASNPCCKTWLSGIEGCIPF 188
+++ S G + ++G + YD + + + K + + +S P + S I C+ F
Sbjct: 718 VLVKKYASERNGVNVISGPIFDYNYDGLRDTEDEIKQYVEGSSIPVPTHYYSIITSCLDF 777
Query: 189 VEPCDRRD 196
+P D+ D
Sbjct: 778 TQPADKCD 785
>pdb|3IDD|A Chain A, Cofactor-Independent Phosphoglycerate Mutase From
Thermoplasma Acidophilum Dsm 1728
pdb|3IDD|B Chain B, Cofactor-Independent Phosphoglycerate Mutase From
Thermoplasma Acidophilum Dsm 1728
Length = 407
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 66 ARLLTSKLSHQLQRLYN--LGARKIVVSEIGPIGCVPAITSQNKHKGKCV 113
AR + S +R+ N L +++V G + +P+ T +N+ KG CV
Sbjct: 198 ARRILSDHRVNKERVKNGRLPGNELLVRSAGKVPAIPSFTEKNRXKGACV 247
>pdb|3KD8|A Chain A, Cofactor-Independent Phosphoglycerate Mutase From
Thermoplasma Acidophilum Dsm 1728
pdb|3KD8|B Chain B, Cofactor-Independent Phosphoglycerate Mutase From
Thermoplasma Acidophilum Dsm 1728
Length = 399
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 66 ARLLTSKLSHQLQRLYN--LGARKIVVSEIGPIGCVPAITSQNKHKGKCV 113
AR + S +R+ N L +++V G + +P+ T +N+ KG CV
Sbjct: 197 ARRILSDHRVNKERVKNGRLPGNELLVRSAGKVPAIPSFTEKNRXKGACV 246
>pdb|3CLW|A Chain A, Crystal Structure Of Conserved Exported Protein From
Bacteroides Fragilis
pdb|3CLW|B Chain B, Crystal Structure Of Conserved Exported Protein From
Bacteroides Fragilis
pdb|3CLW|C Chain C, Crystal Structure Of Conserved Exported Protein From
Bacteroides Fragilis
pdb|3CLW|D Chain D, Crystal Structure Of Conserved Exported Protein From
Bacteroides Fragilis
pdb|3CLW|E Chain E, Crystal Structure Of Conserved Exported Protein From
Bacteroides Fragilis
pdb|3CLW|F Chain F, Crystal Structure Of Conserved Exported Protein From
Bacteroides Fragilis
Length = 507
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 44 IGSNDYISNYPATLLHDTNKRFARLLTS 71
+ ++DY S YPATLL D R + L++
Sbjct: 274 VAAHDYWSAYPATLLVDIRNRIHKELSA 301
>pdb|3NKM|A Chain A, Crystal Structure Of Mouse Autotaxin
pdb|3NKN|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
14:0-Lpa
pdb|3NKO|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
16:0-Lpa
pdb|3NKP|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
18:1-Lpa
pdb|3NKQ|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
18:3-Lpa
pdb|3NKR|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
22:6-Lpa
Length = 831
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/68 (20%), Positives = 32/68 (47%)
Query: 129 AMLQNLTSSLQGSSFLNGHAYRLAYDAIINPSNYGKGWFKDASNPCCKTWLSGIEGCIPF 188
+++ S G + ++G + Y+ + + + K + + +S P + S I C+ F
Sbjct: 679 VLVKKYASERNGVNVISGPIFDYNYNGLRDIEDEIKQYVEGSSIPVPTHYYSIITSCLDF 738
Query: 189 VEPCDRRD 196
+P D+ D
Sbjct: 739 TQPADKCD 746
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,505,410
Number of Sequences: 62578
Number of extensions: 246048
Number of successful extensions: 476
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 470
Number of HSP's gapped (non-prelim): 8
length of query: 236
length of database: 14,973,337
effective HSP length: 96
effective length of query: 140
effective length of database: 8,965,849
effective search space: 1255218860
effective search space used: 1255218860
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)