Query 048376
Match_columns 221
No_of_seqs 108 out of 1177
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 08:55:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048376.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048376hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0156 Cytochrome P450 CYP2 s 100.0 1.6E-41 3.4E-46 286.3 21.3 215 1-221 31-273 (489)
2 PLN02971 tryptophan N-hydroxyl 100.0 1.2E-29 2.6E-34 219.4 22.4 216 1-220 62-313 (543)
3 PLN02655 ent-kaurene oxidase 100.0 3.1E-29 6.8E-34 213.3 21.7 214 1-220 4-253 (466)
4 PLN02687 flavonoid 3'-monooxyg 100.0 1.9E-28 4.1E-33 210.9 21.6 214 1-220 39-279 (517)
5 PLN02183 ferulate 5-hydroxylas 100.0 4.6E-28 1E-32 208.5 21.6 218 1-220 41-280 (516)
6 PLN00110 flavonoid 3',5'-hydro 100.0 7E-28 1.5E-32 206.7 21.7 213 1-220 36-275 (504)
7 PLN03234 cytochrome P450 83B1; 100.0 4.7E-27 1E-31 201.6 22.2 215 1-220 33-273 (499)
8 PLN03112 cytochrome P450 famil 99.9 4E-26 8.8E-31 196.5 21.4 216 1-220 37-282 (514)
9 PLN00168 Cytochrome P450; Prov 99.9 1E-25 2.2E-30 194.2 22.6 219 1-220 40-291 (519)
10 PLN03018 homomethionine N-hydr 99.9 1.4E-25 3E-30 193.4 22.2 217 1-220 45-300 (534)
11 PLN02290 cytokinin trans-hydro 99.9 4.3E-26 9.3E-31 196.4 18.1 213 1-220 47-300 (516)
12 PLN02966 cytochrome P450 83A1 99.9 3.3E-25 7.1E-30 190.3 21.6 215 1-220 34-274 (502)
13 PTZ00404 cytochrome P450; Prov 99.9 1.9E-24 4E-29 184.8 18.8 208 1-220 34-271 (482)
14 PLN02394 trans-cinnamate 4-mon 99.9 1.7E-23 3.7E-28 179.8 22.0 217 1-220 35-282 (503)
15 PLN02500 cytochrome P450 90B1 99.9 8.7E-23 1.9E-27 174.9 19.4 204 1-220 43-271 (490)
16 PF00067 p450: Cytochrome P450 99.9 6.7E-24 1.4E-28 178.7 11.4 211 1-220 4-247 (463)
17 KOG0158 Cytochrome P450 CYP3/C 99.9 7.2E-23 1.6E-27 171.9 14.8 205 1-221 36-276 (499)
18 PLN03141 3-epi-6-deoxocathaste 99.9 7.6E-22 1.7E-26 167.5 18.3 206 1-220 12-241 (452)
19 PLN02987 Cytochrome P450, fami 99.9 1.1E-21 2.4E-26 167.1 18.2 202 1-220 35-258 (472)
20 PLN02196 abscisic acid 8'-hydr 99.9 2.6E-21 5.7E-26 164.6 18.6 198 1-220 40-255 (463)
21 PLN02169 fatty acid (omega-1)- 99.9 2.2E-21 4.7E-26 166.5 17.4 210 1-220 36-285 (500)
22 PLN02936 epsilon-ring hydroxyl 99.9 7.1E-21 1.5E-25 163.0 17.4 214 2-220 18-269 (489)
23 PLN02302 ent-kaurenoic acid ox 99.9 6.9E-20 1.5E-24 157.0 20.6 203 1-220 47-274 (490)
24 KOG0157 Cytochrome P450 CYP4/C 99.9 2E-20 4.3E-25 160.1 15.8 209 1-217 40-278 (497)
25 PLN02774 brassinosteroid-6-oxi 99.9 4.2E-20 9E-25 157.3 17.7 197 1-220 36-252 (463)
26 PLN02738 carotene beta-ring hy 99.9 5.7E-20 1.2E-24 161.0 18.4 207 7-220 142-382 (633)
27 PLN03195 fatty acid omega-hydr 99.8 3.3E-19 7.2E-24 153.7 18.0 210 1-220 35-279 (516)
28 KOG0159 Cytochrome P450 CYP11/ 99.8 6.5E-17 1.4E-21 134.3 17.5 195 1-202 55-291 (519)
29 PLN02426 cytochrome P450, fami 99.6 2.2E-14 4.7E-19 123.4 17.2 202 4-220 49-286 (502)
30 PLN02648 allene oxide synthase 99.4 5.4E-13 1.2E-17 113.8 6.6 130 3-138 24-194 (480)
31 KOG0684 Cytochrome P450 [Secon 99.3 2.8E-11 6.1E-16 99.2 12.2 200 4-220 40-261 (486)
32 COG2124 CypX Cytochrome P450 [ 98.9 9.3E-08 2E-12 80.5 15.1 174 19-219 25-222 (411)
33 smart00362 RRM_2 RNA recogniti 79.0 10 0.00022 22.1 5.6 39 19-57 13-58 (72)
34 PF13893 RRM_5: RNA recognitio 72.9 12 0.00026 21.4 4.5 45 22-66 1-50 (56)
35 PF00076 RRM_1: RNA recognitio 70.6 12 0.00025 22.2 4.3 56 6-64 2-66 (70)
36 TIGR01661 ELAV_HUD_SF ELAV/HuD 68.6 14 0.0003 30.3 5.5 60 5-67 272-341 (352)
37 PF13625 Helicase_C_3: Helicas 68.0 10 0.00023 26.3 4.0 36 20-57 78-113 (129)
38 PLN03120 nucleic acid binding 67.3 20 0.00044 28.3 5.8 59 6-67 8-72 (260)
39 PLN03134 glycine-rich RNA-bind 63.1 22 0.00047 25.4 4.9 58 6-66 38-105 (144)
40 KOG0114 Predicted RNA-binding 58.1 41 0.0009 22.7 5.1 39 19-57 32-76 (124)
41 smart00360 RRM RNA recognition 55.9 37 0.0008 19.4 5.4 39 19-57 10-57 (71)
42 PF07912 ERp29_N: ERp29, N-ter 54.9 48 0.001 23.1 5.2 44 23-66 71-126 (126)
43 PF07659 DUF1599: Domain of Un 51.4 17 0.00037 21.8 2.3 14 84-97 3-16 (61)
44 cd00590 RRM RRM (RNA recogniti 50.8 47 0.001 19.1 5.7 40 19-58 13-60 (74)
45 PF14259 RRM_6: RNA recognitio 44.5 50 0.0011 19.5 3.8 40 19-58 12-59 (70)
46 PF13072 DUF3936: Protein of u 39.1 12 0.00027 20.0 0.3 25 3-32 9-33 (38)
47 KOG0149 Predicted RNA-binding 37.4 31 0.00068 26.8 2.4 58 6-66 16-82 (247)
48 PRK02302 hypothetical protein; 35.8 80 0.0017 20.6 3.7 37 21-57 18-54 (89)
49 PF09061 Stirrup: Stirrup; In 34.3 78 0.0017 19.1 3.2 27 19-46 9-35 (79)
50 PRK02886 hypothetical protein; 32.8 97 0.0021 20.1 3.7 37 21-57 16-52 (87)
51 KOG0107 Alternative splicing f 32.8 67 0.0014 23.9 3.3 46 7-55 15-64 (195)
52 TIGR01628 PABP-1234 polyadenyl 32.8 1.1E+02 0.0024 27.0 5.5 59 6-67 289-356 (562)
53 TIGR01659 sex-lethal sex-letha 31.0 1.3E+02 0.0029 24.9 5.3 49 6-57 197-254 (346)
54 COG0724 RNA-binding proteins ( 29.0 1.9E+02 0.0042 21.8 5.9 59 6-67 119-187 (306)
55 PRK09812 toxin ChpB; Provision 28.1 56 0.0012 22.3 2.3 21 30-50 10-40 (116)
56 COG4471 Uncharacterized protei 28.0 1.8E+02 0.0038 18.9 4.3 39 19-57 15-53 (90)
57 COG1965 CyaY Protein implicate 27.9 68 0.0015 21.6 2.5 28 30-57 36-63 (106)
58 PF05172 Nup35_RRM: Nup53/35/4 27.7 1.6E+02 0.0035 19.6 4.3 45 20-64 20-80 (100)
59 TIGR01649 hnRNP-L_PTB hnRNP-L/ 26.9 2E+02 0.0044 25.0 6.0 49 19-67 290-343 (481)
60 PRK02240 GTP cyclohydrolase II 26.7 1.6E+02 0.0035 23.3 4.8 35 21-56 168-206 (254)
61 KOG4241 Mitochondrial ribosoma 26.3 52 0.0011 25.1 1.9 37 20-56 125-163 (245)
62 PF09804 DUF2347: Uncharacteri 26.1 28 0.00062 27.9 0.6 33 17-49 159-195 (280)
63 PF09336 Vps4_C: Vps4 C termin 25.5 50 0.0011 19.8 1.4 11 20-30 52-62 (62)
64 COG1707 ACT domain-containing 24.7 87 0.0019 23.1 2.8 37 16-52 154-195 (218)
65 PF05165 GGDN: GGDN family; I 24.7 1.2E+02 0.0026 23.9 3.8 27 20-47 160-186 (246)
66 PRK09907 toxin MazF; Provision 24.4 82 0.0018 21.3 2.5 22 29-50 9-39 (111)
67 TIGR01642 U2AF_lg U2 snRNP aux 24.2 1.6E+02 0.0035 25.5 5.0 47 21-67 435-494 (509)
68 PRK04023 DNA polymerase II lar 23.5 1.3E+02 0.0029 28.8 4.3 63 29-94 369-432 (1121)
69 TIGR00354 polC DNA polymerase, 22.3 1.4E+02 0.003 28.5 4.2 63 29-94 367-430 (1095)
70 PLN03121 nucleic acid binding 22.3 3E+02 0.0065 21.7 5.4 59 6-67 9-73 (243)
71 PF02452 PemK: PemK-like prote 22.1 55 0.0012 21.5 1.3 20 30-49 3-30 (110)
72 TIGR01628 PABP-1234 polyadenyl 21.7 2.1E+02 0.0047 25.3 5.3 58 6-66 4-71 (562)
73 KOG0369 Pyruvate carboxylase [ 21.6 1.1E+02 0.0025 28.0 3.4 38 20-57 174-215 (1176)
74 PF09902 DUF2129: Uncharacteri 21.4 2.2E+02 0.0047 17.7 3.7 35 23-57 14-48 (71)
75 PF09926 DUF2158: Uncharacteri 20.8 98 0.0021 17.9 2.0 17 30-46 4-20 (53)
No 1
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.6e-41 Score=286.30 Aligned_cols=215 Identities=38% Similarity=0.696 Sum_probs=181.0
Q ss_pred CCCCcccccccccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCC-CchhhhhhcCCC
Q 048376 1 PWKLPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPH-FPPAQIISYNYR 79 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~-~~~~~~~~~~~~ 79 (221)
|+|||||||++++....+|..|++|+++|||||++|+|++|+|||||+++|||+|++++..|++||. ......+++++.
T Consensus 31 P~~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~~~Vviss~~~akE~l~~~d~~fa~Rp~~~~~~~~~~~~~~ 110 (489)
T KOG0156|consen 31 PPPLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSVPVVVISSYEAAKEVLVKQDLEFADRPDPTATLKYLSYGGK 110 (489)
T ss_pred CCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCceEEEECCHHHHHHHHHhCCccccCCCCchhhHHHhcCCCC
Confidence 6789999999999433489999999999999999999999999999999999999999999999997 334567776778
Q ss_pred ceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH---------------------HHHHHHHHHHHHHHHhCCCCCC
Q 048376 80 DIVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK---------------------SKIYSLMYGITSRAAFGNRSRD 138 (221)
Q Consensus 80 ~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~---------------------~~~~~~~~~vi~~~~fG~~~~~ 138 (221)
++++++||+.||++||+++..+++.+.++++..++.+ ..+..+++|||++++||.++++
T Consensus 111 ~i~~a~yG~~Wr~~Rr~~~~~L~~~~~~~~~~~~R~~E~~~l~~~l~~~~~~~~vdl~~~l~~~~~nvI~~~~fG~rf~~ 190 (489)
T KOG0156|consen 111 GIVFAPYGDYWREMRRFALTELRSFGRGKSFMEIREEEVDELVKKLSKSKKGEPVDLSELLDLLVGNVICRMLFGRRFEE 190 (489)
T ss_pred ceEeCCCcHHHHHHHHHHHHHhcChhhhhhhHHHHHHHHHHHHHHHHhcCCCceeeHHHHHHHHHHHHHHHHHhCCcccc
Confidence 9999999999999999999999998877766444322 4778899999999999999986
Q ss_pred h--h---HHHHHHHHHHHHcCCCccccccc-cccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCC
Q 048376 139 Q--E---AFASVRGEITKLMSGFNIADMFP-SVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDE 212 (221)
Q Consensus 139 ~--~---~~~~~~~~~~~~~~~~~~~~~~P-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 212 (221)
+ + ++.+++.+.....+.+.+.+++| +++++++..+..++......++..++++.|++|+++. . .+ +.+
T Consensus 191 ~~~~~~~~~~~l~~~~~~~~~~~~~~d~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~i~eh~~~~-~---~~--~~~ 264 (489)
T KOG0156|consen 191 EDEEEFLELKELVEESLELLGSFNLSDYFPFLLRWLDGISGLEKRLKKVSKRLDEFLERIIDEHREKI-G---DE--EGR 264 (489)
T ss_pred CCchHHHHHHHHHHHHHHHhCCccHHHHhhHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhh-c---cC--CCC
Confidence 3 2 36677888888888888899999 6776654556777787888889999999999999876 2 11 239
Q ss_pred cHHHHhhcC
Q 048376 213 DLVDVLLKI 221 (221)
Q Consensus 213 d~ld~ll~~ 221 (221)
||+|+||++
T Consensus 265 D~vD~lL~~ 273 (489)
T KOG0156|consen 265 DFVDALLKL 273 (489)
T ss_pred cHHHHHHHh
Confidence 999999964
No 2
>PLN02971 tryptophan N-hydroxylase
Probab=99.97 E-value=1.2e-29 Score=219.41 Aligned_cols=216 Identities=24% Similarity=0.406 Sum_probs=152.8
Q ss_pred CCCCcccccccccCCCCc-cHHHHHHHhhcC-CceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCC
Q 048376 1 PWKLPLIGNLHQLAGSLP-HHRLRDLTNKYG-PLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNY 78 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~-~~~~~~~~~~YG-~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~ 78 (221)
|+|+|++||++++....+ +..+.+|+++|| +||++|+|++|+|||+||++|||+|++++..|++||..+....++.+.
T Consensus 62 P~~lPiiGnl~~l~~~~~~~~~l~~~~~~yg~~i~~~~~G~~~~vvv~dpe~ikevl~~~~~~f~~rp~~~~~~~l~~~~ 141 (543)
T PLN02971 62 PTGFPIVGMIPAMLKNRPVFRWLHSLMKELNTEIACVRLGNTHVIPVTCPKIAREIFKQQDALFASRPLTYAQKILSNGY 141 (543)
T ss_pred CCCCCcccchHHhccCCcHhHHHHHHHHHhCCceEEEEcCCcceEEECCHHHHHHHHHhcchhhcCCCcccchhhccCCC
Confidence 557999999999843333 677899999999 799999999999999999999999999999999999754444443322
Q ss_pred CceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH----------------------HHHHHHHHHHHHHHHhCCCC
Q 048376 79 RDIVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK----------------------SKIYSLMYGITSRAAFGNRS 136 (221)
Q Consensus 79 ~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~----------------------~~~~~~~~~vi~~~~fG~~~ 136 (221)
.++++..+|+.||++||++.+.++++..++.+..++++ +++.+++++||++++||.++
T Consensus 142 ~~~l~~~~G~~Wk~~Rk~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~~ 221 (543)
T PLN02971 142 KTCVITPFGEQFKKMRKVIMTEIVCPARHRWLHDNRAEETDHLTAWLYNMVKNSEPVDLRFVTRHYCGNAIKRLMFGTRT 221 (543)
T ss_pred CceEecCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHhCCcc
Confidence 34567778999999999987677765544433322221 67889999999999999986
Q ss_pred CC------hh---HHHHHHHHHHHHcC---CCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 048376 137 RD------QE---AFASVRGEITKLMS---GFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLK 204 (221)
Q Consensus 137 ~~------~~---~~~~~~~~~~~~~~---~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 204 (221)
.. ++ ++.+.+...+.... ...+.+++|++++++ +.+..+...+..+.+.+++.++|+++++..+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-- 298 (543)
T PLN02971 222 FSEKTEPDGGPTLEDIEHMDAMFEGLGFTFAFCISDYLPMLTGLD-LNGHEKIMRESSAIMDKYHDPIIDERIKMWRE-- 298 (543)
T ss_pred cccccccccchhHHHHHHHHHHHHHHHhccCCcHHHhCCchhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 31 11 23333444333221 123456778776542 22344555566778889999999998775432
Q ss_pred hccCCCCCcHHHHhhc
Q 048376 205 ICKIGDDEDLVDVLLK 220 (221)
Q Consensus 205 ~~~~~~~~d~ld~ll~ 220 (221)
+....+.||+|.||+
T Consensus 299 -~~~~~~~d~l~~ll~ 313 (543)
T PLN02971 299 -GKRTQIEDFLDIFIS 313 (543)
T ss_pred -cCCCCCcCHHHHHHh
Confidence 111135799999985
No 3
>PLN02655 ent-kaurene oxidase
Probab=99.97 E-value=3.1e-29 Score=213.28 Aligned_cols=214 Identities=23% Similarity=0.389 Sum_probs=152.3
Q ss_pred CCCCcccccccccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCCCc
Q 048376 1 PWKLPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNYRD 80 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~~~ 80 (221)
|+|+|++||++++....++..+.+|+++||+||++++|++++|||+||+++||+|+++...|++||.......+..++..
T Consensus 4 p~~lP~iG~l~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~k~il~~~~~~f~~r~~~~~~~~~~~~~~~ 83 (466)
T PLN02655 4 VPGLPVIGNLLQLKEKKPHRTFTKWSEIYGPIYTIRTGASSVVVLNSTEVAKEAMVTKFSSISTRKLSKALTVLTRDKSM 83 (466)
T ss_pred CCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEECCEeEEEeCCHHHHHHHHHhcCchhcCCChhhHHHHHhcCCCc
Confidence 56899999999985455789999999999999999999999999999999999999999999999865444444332334
Q ss_pred eeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH------------------------HHHHHHHHHHHHHHHhCCCC
Q 048376 81 IVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK------------------------SKIYSLMYGITSRAAFGNRS 136 (221)
Q Consensus 81 ~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~------------------------~~~~~~~~~vi~~~~fG~~~ 136 (221)
++++++|+.||++||.+.+++++...++.+..++++ +.+.+++++||+.++||.++
T Consensus 84 ~~~~~~g~~wr~~Rr~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~~ 163 (466)
T PLN02655 84 VATSDYGDFHKMVKRYVMNNLLGANAQKRFRDTRDMLIENMLSGLHALVKDDPHSPVNFRDVFENELFGLSLIQALGEDV 163 (466)
T ss_pred eeeCCCcHHHHHHHHHHHHHhcCchHHHHhHHHHHHHHHHHHHHHHhhccccCCCceeHHHHHHHHHHHHHHHHHhcccc
Confidence 566678999999999887787775444433322111 67889999999999999886
Q ss_pred CChh------------HHHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 048376 137 RDQE------------AFASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLK 204 (221)
Q Consensus 137 ~~~~------------~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 204 (221)
+..+ .+.......+.......+.+++|++++++. ..+.+...+....+.+++.+++++++++...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-- 240 (466)
T PLN02655 164 ESVYVEELGTEISKEEIFDVLVHDMMMCAIEVDWRDFFPYLSWIPN-KSFETRVQTTEFRRTAVMKALIKQQKKRIAR-- 240 (466)
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHhCCcchhhhhhhhhhcCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--
Confidence 6311 122223333333333344567887776531 1223334444555678888999888876543
Q ss_pred hccCCCCCcHHHHhhc
Q 048376 205 ICKIGDDEDLVDVLLK 220 (221)
Q Consensus 205 ~~~~~~~~d~ld~ll~ 220 (221)
. ..+.||+|.+|+
T Consensus 241 -~--~~~~d~l~~ll~ 253 (466)
T PLN02655 241 -G--EERDCYLDFLLS 253 (466)
T ss_pred -C--CCcccHHHHHHh
Confidence 2 134689999885
No 4
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.96 E-value=1.9e-28 Score=210.92 Aligned_cols=214 Identities=36% Similarity=0.675 Sum_probs=159.3
Q ss_pred CCCCcccccccccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCCCc
Q 048376 1 PWKLPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNYRD 80 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~~~ 80 (221)
|+++|++||++++ ..+++..+.+|+++||++|++++|++++|||+||++++++|+++.+.|++||.......+...+.+
T Consensus 39 p~~~P~iG~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~p~~~~~il~~~~~~f~~r~~~~~~~~~~~~~~~ 117 (517)
T PLN02687 39 PRGWPVLGNLPQL-GPKPHHTMAALAKTYGPLFRLRFGFVDVVVAASASVAAQFLRTHDANFSNRPPNSGAEHMAYNYQD 117 (517)
T ss_pred CCCCCccccHHhc-CCchhHHHHHHHHHhCCeeEEecCCceEEEeCCHHHHHHHHHhcchhhhcCCCccchhhhccCCce
Confidence 4569999999998 456788999999999999999999999999999999999999999999999876554444333346
Q ss_pred eeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH---------------------HHHHHHHHHHHHHHHhCCCCCC-
Q 048376 81 IVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK---------------------SKIYSLMYGITSRAAFGNRSRD- 138 (221)
Q Consensus 81 ~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~---------------------~~~~~~~~~vi~~~~fG~~~~~- 138 (221)
++++.+|+.||++||++..++|+.+.++.+.+++++ +.+..+++++|+.++||.++..
T Consensus 118 ~l~~~~g~~Wk~~Rr~l~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~~~~~ 197 (517)
T PLN02687 118 LVFAPYGPRWRALRKICAVHLFSAKALDDFRHVREEEVALLVRELARQHGTAPVNLGQLVNVCTTNALGRAMVGRRVFAG 197 (517)
T ss_pred eEeCCCCHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHHhCcccccc
Confidence 677778999999999976577887777766544332 5678889999999999988631
Q ss_pred --h---hHHHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCc
Q 048376 139 --Q---EAFASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDED 213 (221)
Q Consensus 139 --~---~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d 213 (221)
+ +.+.+.+..++...+...+.+++|+++++. +.+..++..+..+.+.+++.+.|+++++..+. + +....|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~-~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~---~-~~~~~d 272 (517)
T PLN02687 198 DGDEKAREFKEMVVELMQLAGVFNVGDFVPALRWLD-LQGVVGKMKRLHRRFDAMMNGIIEEHKAAGQT---G-SEEHKD 272 (517)
T ss_pred CCcchHHHHHHHHHHHHHHhccCcHHHHhhhHHHhC-cccHHHHHHHHHHHHHHHHHHHHHHHHHhccc---c-Cccccc
Confidence 1 245555555555443333346678766542 12234556667788889999999998876432 1 113579
Q ss_pred HHHHhhc
Q 048376 214 LVDVLLK 220 (221)
Q Consensus 214 ~ld~ll~ 220 (221)
+++.||+
T Consensus 273 ~l~~ll~ 279 (517)
T PLN02687 273 LLSTLLA 279 (517)
T ss_pred HHHHHHH
Confidence 9999874
No 5
>PLN02183 ferulate 5-hydroxylase
Probab=99.96 E-value=4.6e-28 Score=208.49 Aligned_cols=218 Identities=34% Similarity=0.660 Sum_probs=158.8
Q ss_pred CCCCcccccccccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCCCc
Q 048376 1 PWKLPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNYRD 80 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~~~ 80 (221)
|+++|++||++++ ....+..+.+|+++||++|++++|++|+|||+||++++++|++++..|++||.......+..++.+
T Consensus 41 p~~~Pl~G~l~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~~~~~~~~~~~ 119 (516)
T PLN02183 41 PKGLPIIGNMLMM-DQLTHRGLANLAKQYGGLFHMRMGYLHMVAVSSPEVARQVLQVQDSVFSNRPANIAISYLTYDRAD 119 (516)
T ss_pred CCCCCeeccHHhc-CCcchHHHHHHHHHhCCeeEEEeCCcceEEeCCHHHHHHHHHhhhhhhcCCCcccchhccccCCCc
Confidence 5679999999988 445677899999999999999999999999999999999999999999999864333333222234
Q ss_pred eeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH-------------------HHHHHHHHHHHHHHHhCCCCCChh-
Q 048376 81 IVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK-------------------SKIYSLMYGITSRAAFGNRSRDQE- 140 (221)
Q Consensus 81 ~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~-------------------~~~~~~~~~vi~~~~fG~~~~~~~- 140 (221)
.++..+|+.|+++||+++.++|+.+.++.+..+.++ +.+.+++++||++++||.+++..+
T Consensus 120 ~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~vi~~~~fG~~~~~~~~ 199 (516)
T PLN02183 120 MAFAHYGPFWRQMRKLCVMKLFSRKRAESWASVRDEVDSMVRSVSSNIGKPVNIGELIFTLTRNITYRAAFGSSSNEGQD 199 (516)
T ss_pred eEeCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeHHHHHHHHHHHHHHhHhhcCcccchHH
Confidence 466678999999999966678887777665544332 678899999999999999876543
Q ss_pred HHHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--ccCCCCCcHHHHh
Q 048376 141 AFASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKI--CKIGDDEDLVDVL 218 (221)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~d~ld~l 218 (221)
.+.+.+.............+++|++.++. +.+..++..+..+.+.+++.++|++++++....+. .+....+|++|.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~l~~l 278 (516)
T PLN02183 200 EFIKILQEFSKLFGAFNVADFIPWLGWID-PQGLNKRLVKARKSLDGFIDDIIDDHIQKRKNQNADNDSEEAETDMVDDL 278 (516)
T ss_pred HHHHHHHHHHHHhCCccHHHhcchhHhcc-cccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccHHHHH
Confidence 56666655555444444456778776541 12234566677888899999999888765432100 0001346899988
Q ss_pred hc
Q 048376 219 LK 220 (221)
Q Consensus 219 l~ 220 (221)
|.
T Consensus 279 l~ 280 (516)
T PLN02183 279 LA 280 (516)
T ss_pred HH
Confidence 74
No 6
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.96 E-value=7e-28 Score=206.69 Aligned_cols=213 Identities=28% Similarity=0.578 Sum_probs=155.1
Q ss_pred CCCCcccccccccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCCCc
Q 048376 1 PWKLPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNYRD 80 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~~~ 80 (221)
|+++|++||++++ ...++..+.+|+++||+||++|+|++++||||||++++++|+++.+.|++||..........++.+
T Consensus 36 p~~~Pl~G~l~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~vl~~~~~~f~~r~~~~~~~~~~~~~~~ 114 (504)
T PLN00110 36 PRGWPLLGALPLL-GNMPHVALAKMAKRYGPVMFLKMGTNSMVVASTPEAARAFLKTLDINFSNRPPNAGATHLAYGAQD 114 (504)
T ss_pred CCCCCeeechhhc-CCchHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcchhhcCCCCccchhhhccCCCc
Confidence 5569999999988 556788999999999999999999999999999999999999999999999965433222223344
Q ss_pred eeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH----------------------HHHHHHHHHHHHHHHhCCCCC-
Q 048376 81 IVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK----------------------SKIYSLMYGITSRAAFGNRSR- 137 (221)
Q Consensus 81 ~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~----------------------~~~~~~~~~vi~~~~fG~~~~- 137 (221)
.++..+|+.||++||++....|+.+.++.+.+++.+ +.+..++.+||++++||.++.
T Consensus 115 ~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~i~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~vi~~~~fg~~~~~ 194 (504)
T PLN00110 115 MVFADYGPRWKLLRKLSNLHMLGGKALEDWSQVRTVELGHMLRAMLELSQRGEPVVVPEMLTFSMANMIGQVILSRRVFE 194 (504)
T ss_pred eeeCCCCHHHHHHHHHHHHHhCCHHHHHHhhHHHHHHHHHHHHHHHHhccCCCcEeHHHHHHHHHHHHHHHHHhCCcccc
Confidence 566678999999999986567887777665443321 567788999999999998862
Q ss_pred -C---hhHHHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCc
Q 048376 138 -D---QEAFASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDED 213 (221)
Q Consensus 138 -~---~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d 213 (221)
. .+.+...+...+.......+.+++|++.|++ +.+..+...+..+.+.+++.+.++++++..+. . ....|
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~--~~~~d 268 (504)
T PLN00110 195 TKGSESNEFKDMVVELMTTAGYFNIGDFIPSIAWMD-IQGIERGMKHLHKKFDKLLTRMIEEHTASAHE---R--KGNPD 268 (504)
T ss_pred cCchhHHHHHHHHHHHHHHhccccHHHHcchHhhhC-cchHHHHHHHHHHHHHHHHHHHHHHHHhhccc---c--ccCCC
Confidence 1 1246666655555443333456778776542 22334555666778888888999888765432 1 13468
Q ss_pred HHHHhhc
Q 048376 214 LVDVLLK 220 (221)
Q Consensus 214 ~ld~ll~ 220 (221)
++|.+++
T Consensus 269 ~l~~ll~ 275 (504)
T PLN00110 269 FLDVVMA 275 (504)
T ss_pred hhhHHhh
Confidence 9999874
No 7
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.96 E-value=4.7e-27 Score=201.57 Aligned_cols=215 Identities=32% Similarity=0.604 Sum_probs=157.5
Q ss_pred CCCCcccccccccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCCCc
Q 048376 1 PWKLPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNYRD 80 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~~~ 80 (221)
|+++|++||++++...+++..+.+|+++||++|++++|+.++||++||+++++++++++..|.+||...........+..
T Consensus 33 p~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~~~~~~lg~~~~vvv~dpe~~~~il~~~~~~f~~r~~~~~~~~~~~~~~~ 112 (499)
T PLN03234 33 PKGLPIIGNLHQMEKFNPQHFLFRLSKLYGPIFTMKIGGRRLAVISSAELAKELLKTQDLNFTARPLLKGQQTMSYQGRE 112 (499)
T ss_pred CCCCCeeccHHhcCCCCccHHHHHHHHHcCCeEEEEecCcCEEEECCHHHHHHHHHhCCccccCCCCchhhhhhccCCCc
Confidence 45699999999984336778899999999999999999999999999999999999999999999965433333222344
Q ss_pred eeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH----------------------HHHHHHHHHHHHHHHhCCCCCC
Q 048376 81 IVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK----------------------SKIYSLMYGITSRAAFGNRSRD 138 (221)
Q Consensus 81 ~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~----------------------~~~~~~~~~vi~~~~fG~~~~~ 138 (221)
+.+..+|+.|+.+||.++.++|+++.+..+..++++ +.+.++++++|++++||.+++.
T Consensus 113 ~~~~~~~~~w~~~Rr~l~~~~f~~~~l~~~~~~i~~~~~~ll~~l~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~~~~ 192 (499)
T PLN03234 113 LGFGQYTAYYREMRKMCMVNLFSPNRVASFRPVREEECQRMMDKIYKAADQSGTVDLSELLLSFTNCVVCRQAFGKRYNE 192 (499)
T ss_pred cccCCCcHHHHHHHHHHHHHhcCHHHHHHhHHHHHHHHHHHHHHHHHhccCCCeEEHHHHHHHHHHHHHHHHHhCCcccc
Confidence 455667899999999866688988777665544332 6788899999999999998874
Q ss_pred hh----HHHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcH
Q 048376 139 QE----AFASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDL 214 (221)
Q Consensus 139 ~~----~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ 214 (221)
.+ ++.+.+.+.....+.....+.+|++++++.+.+..++..+..+.+++++.+.|+++++.... . ..++|+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~--~~~~d~ 267 (499)
T PLN03234 193 YGTEMKRFIDILYETQALLGTLFFSDLFPYFGFLDNLTGLSARLKKAFKELDTYLQELLDETLDPNRP---K--QETESF 267 (499)
T ss_pred cchhHHHHHHHHHHHHHHcCCCcHHHHhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc---C--CCcccH
Confidence 32 34444444433333333445667666543334445677788899999999999987654322 1 135789
Q ss_pred HHHhhc
Q 048376 215 VDVLLK 220 (221)
Q Consensus 215 ld~ll~ 220 (221)
++.|++
T Consensus 268 l~~l~~ 273 (499)
T PLN03234 268 IDLLMQ 273 (499)
T ss_pred HHHHHH
Confidence 988774
No 8
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.95 E-value=4e-26 Score=196.47 Aligned_cols=216 Identities=33% Similarity=0.624 Sum_probs=153.5
Q ss_pred CCCCcccccccccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCCCc
Q 048376 1 PWKLPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNYRD 80 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~~~ 80 (221)
|+++|++||++++ ...++..+.+|.++||++|++++|+.++|+++||++++++++++++.|++||..........+..+
T Consensus 37 p~~~pl~G~~~~~-~~~~~~~~~~~~~kyG~v~~~~~g~~~~v~v~dpe~~~~vl~~~~~~f~~~~~~~~~~~~~~g~~~ 115 (514)
T PLN03112 37 PPRWPIVGNLLQL-GPLPHRDLASLCKKYGPLVYLRLGSVDAITTDDPELIREILLRQDDVFASRPRTLAAVHLAYGCGD 115 (514)
T ss_pred CCCCCeeeeHHhc-CCchHHHHHHHHHHhCCeEEEEecCccEEEECCHHHHHHHHHhCCcccccCCCcccceeeccCCCc
Confidence 5679999999998 556788899999999999999999999999999999999999999999999864322221122233
Q ss_pred eeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH----------------------HHHHHHHHHHHHHHHhCCCCCC
Q 048376 81 IVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK----------------------SKIYSLMYGITSRAAFGNRSRD 138 (221)
Q Consensus 81 ~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~----------------------~~~~~~~~~vi~~~~fG~~~~~ 138 (221)
+++..+|+.|+.+||++..++|+.+.++.+...+.+ +.+.++++++|++++||.++..
T Consensus 116 ~~~~~~g~~wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~lv~~l~~~~~~~~~vd~~~~~~~~~~~vi~~~~fG~~~~~ 195 (514)
T PLN03112 116 VALAPLGPHWKRMRRICMEHLLTTKRLESFAKHRAEEARHLIQDVWEAAQTGKPVNLREVLGAFSMNNVTRMLLGKQYFG 195 (514)
T ss_pred eEeCCCCHHHHHHHHHHHHHhcCHHHHHHhhHHHHHHHHHHHHHHHHhhccCCeeeHHHHHHHHHHHHHHHHHcCCcccc
Confidence 455668999999999976678887766655332211 6788899999999999998631
Q ss_pred ------h--hHHHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCC
Q 048376 139 ------Q--EAFASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGD 210 (221)
Q Consensus 139 ------~--~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 210 (221)
+ +.+...+..+..........+++|.++++. +.+..++..+..+.+.+++++.++++++..+.. ....+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~ 272 (514)
T PLN03112 196 AESAGPKEAMEFMHITHELFRLLGVIYLGDYLPAWRWLD-PYGCEKKMREVEKRVDEFHDKIIDEHRRARSGK--LPGGK 272 (514)
T ss_pred ccccchHHHHHHHHHHHHHHHHcCCCcHHHhChHHHhcC-cccHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--ccCCc
Confidence 1 134455554444332223445677666541 122345666777888889999999888754321 00113
Q ss_pred CCcHHHHhhc
Q 048376 211 DEDLVDVLLK 220 (221)
Q Consensus 211 ~~d~ld~ll~ 220 (221)
..||+|.++.
T Consensus 273 ~~d~l~~ll~ 282 (514)
T PLN03112 273 DMDFVDVLLS 282 (514)
T ss_pred cchHHHHHHH
Confidence 4699999874
No 9
>PLN00168 Cytochrome P450; Provisional
Probab=99.95 E-value=1e-25 Score=194.18 Aligned_cols=219 Identities=23% Similarity=0.387 Sum_probs=150.4
Q ss_pred CCCCcccccccccCC--CCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCC
Q 048376 1 PWKLPLIGNLHQLAG--SLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNY 78 (221)
Q Consensus 1 P~~~PiiGnl~~l~~--~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~ 78 (221)
|+++|++||++++.. ..++..+.+|+++||++|++++|+.|+|||+||++++++|+++++.|++||.......+..++
T Consensus 40 p~~~pl~G~l~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~il~~~~~~f~~rp~~~~~~~~~~~~ 119 (519)
T PLN00168 40 PPAVPLLGSLVWLTNSSADVEPLLRRLIARYGPVVSLRVGSRLSVFVADRRLAHAALVERGAALADRPAVASSRLLGESD 119 (519)
T ss_pred CCCCcccccHHhhccccccHHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcCCccccCCcccchhhhccCC
Confidence 457999999987632 245778999999999999999999999999999999999999999999999754444443222
Q ss_pred CceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH----------------------HHHHHHHHHHHHHHHhCCCC
Q 048376 79 RDIVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK----------------------SKIYSLMYGITSRAAFGNRS 136 (221)
Q Consensus 79 ~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~----------------------~~~~~~~~~vi~~~~fG~~~ 136 (221)
..+++..+|+.||++||.++.+.|+.+.++.+.+.+.+ +.+..++.++|+.++||.++
T Consensus 120 ~~~~~~~~G~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~ii~~~~fG~~~ 199 (519)
T PLN00168 120 NTITRSSYGPVWRLLRRNLVAETLHPSRVRLFAPARAWVRRVLVDKLRREAEDAAAPRVVETFQYAMFCLLVLMCFGERL 199 (519)
T ss_pred CceeCCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCCc
Confidence 22333468999999998667788998877776654432 45677788999999999998
Q ss_pred CChh--HHHHHHHHHHHHc-CCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc--C---
Q 048376 137 RDQE--AFASVRGEITKLM-SGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICK--I--- 208 (221)
Q Consensus 137 ~~~~--~~~~~~~~~~~~~-~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~--- 208 (221)
+... .+........... ....+.+++|.+.+. ++.+..+++.+..+++.+++.++|+++++.....+..+ .
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 278 (519)
T PLN00168 200 DEPAVRAIAAAQRDWLLYVSKKMSVFAFFPAVTKH-LFRGRLQKALALRRRQKELFVPLIDARREYKNHLGQGGEPPKKE 278 (519)
T ss_pred ChhhHHHHHHHHHHHHHHhcCCCCHHHhCcchhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCcccccc
Confidence 6432 2223333222222 223345667765422 12223455667788899999999998876531100000 0
Q ss_pred -CCCCcHHHHhhc
Q 048376 209 -GDDEDLVDVLLK 220 (221)
Q Consensus 209 -~~~~d~ld~ll~ 220 (221)
....||+|.||+
T Consensus 279 ~~~~~d~l~~ll~ 291 (519)
T PLN00168 279 TTFEHSYVDTLLD 291 (519)
T ss_pred ccccccHHHHHHh
Confidence 014689999874
No 10
>PLN03018 homomethionine N-hydroxylase
Probab=99.95 E-value=1.4e-25 Score=193.41 Aligned_cols=217 Identities=20% Similarity=0.312 Sum_probs=142.8
Q ss_pred CCCCcccccccccCCCCcc-HHHHHHHhhc-CCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCC
Q 048376 1 PWKLPLIGNLHQLAGSLPH-HRLRDLTNKY-GPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNY 78 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~~-~~~~~~~~~Y-G~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~ 78 (221)
|+|+|++||++++..+.++ ..+.++.++| |+||++|+|++|+|+|+||++|||+|+++++.|++||.......+..++
T Consensus 45 p~~~P~iGnl~~l~~~~~~~~~~~~~~~~~~g~i~~~~lg~~~~vvvsdpe~ikevl~~~~~~f~~rp~~~~~~~l~~~~ 124 (534)
T PLN03018 45 PPGWPILGNLPELIMTRPRSKYFHLAMKELKTDIACFNFAGTHTITINSDEIAREAFRERDADLADRPQLSIMETIGDNY 124 (534)
T ss_pred CCCCCeeccHHHhccCCCcchhHHHHHHHhCCCeEEEEeCCccEEEECCHHHHHHHHHhCcHhhcCCCCchhhhhhccCC
Confidence 5679999999998433333 3456667766 7999999999999999999999999999999999999755555454333
Q ss_pred CceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH----------------------HHHHHHHHHHHHHHHhCCCC
Q 048376 79 RDIVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK----------------------SKIYSLMYGITSRAAFGNRS 136 (221)
Q Consensus 79 ~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~----------------------~~~~~~~~~vi~~~~fG~~~ 136 (221)
.+++++.+|+.||.+||++.+.+++....+.+..+.+. +.+.+++++||++++||.++
T Consensus 125 ~~i~~~~~G~~Wk~~Rk~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~~ 204 (534)
T PLN03018 125 KSMGTSPYGEQFMKMKKVITTEIMSVKTLNMLEAARTIEADNLIAYIHSMYQRSETVDVRELSRVYGYAVTMRMLFGRRH 204 (534)
T ss_pred CceEecCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeHHHHHHHHHHHHHHHHHhCCcc
Confidence 45777778999999999987655554433333222110 68889999999999999986
Q ss_pred CC-------hhH----HHHHHHHHHH---HcCCCccccccc-cccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048376 137 RD-------QEA----FASVRGEITK---LMSGFNIADMFP-SVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKA 201 (221)
Q Consensus 137 ~~-------~~~----~~~~~~~~~~---~~~~~~~~~~~P-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 201 (221)
.. ++. +......... ........+++| +++++. ..+...+.......+.+++.++++++++..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 283 (534)
T PLN03018 205 VTKENVFSDDGRLGKAEKHHLEVIFNTLNCLPGFSPVDYVERWLRGWN-IDGQEERAKVNVNLVRSYNNPIIDERVELWR 283 (534)
T ss_pred ccccccccccccchhHHHHHHHHHHHHHHHhCCCcHHHHhhhhhhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 31 112 1111221111 122223334455 443211 1233445555667788899999999887543
Q ss_pred hhhhccCCCCCcHHHHhhc
Q 048376 202 TLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 202 ~~~~~~~~~~~d~ld~ll~ 220 (221)
.. .+...+.||+|.||.
T Consensus 284 ~~--~~~~~~~d~l~~ll~ 300 (534)
T PLN03018 284 EK--GGKAAVEDWLDTFIT 300 (534)
T ss_pred hc--cCCCCcccHHHHHHH
Confidence 21 110125799999874
No 11
>PLN02290 cytokinin trans-hydroxylase
Probab=99.94 E-value=4.3e-26 Score=196.39 Aligned_cols=213 Identities=16% Similarity=0.308 Sum_probs=144.9
Q ss_pred CCCCcccccccccCC------------------CCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCcc
Q 048376 1 PWKLPLIGNLHQLAG------------------SLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVF 62 (221)
Q Consensus 1 P~~~PiiGnl~~l~~------------------~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f 62 (221)
|+|+|++||++++.. ......+.+|+++||++|++|+|+.++|||+||++|+++|+++ +.|
T Consensus 47 P~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~v~~il~~~-~~~ 125 (516)
T PLN02290 47 PKPRPLTGNILDVSALVSQSTSKDMDSIHHDIVGRLLPHYVAWSKQYGKRFIYWNGTEPRLCLTETELIKELLTKY-NTV 125 (516)
T ss_pred CCCCcCCCCHHHHHHHHHHhhcCCCCCCCcccccccchHHHHHHHHhCCeEEEccCCccEEEECCHHHHHHHHhcC-CCC
Confidence 678999999998731 1122357899999999999999999999999999999999987 568
Q ss_pred CCCCCCchhhhhhcCCCceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH-----------------------HHH
Q 048376 63 ASRPHFPPAQIISYNYRDIVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK-----------------------SKI 119 (221)
Q Consensus 63 ~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~-----------------------~~~ 119 (221)
++||...........+.+++++ +|+.||++||++ .+.|+.+.++.+.+++.+ +.+
T Consensus 126 ~~r~~~~~~~~~~~~g~~l~~~-~g~~Wk~~Rk~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~vd~~~~~ 203 (516)
T PLN02290 126 TGKSWLQQQGTKHFIGRGLLMA-NGADWYHQRHIA-APAFMGDRLKGYAGHMVECTKQMLQSLQKAVESGQTEVEIGEYM 203 (516)
T ss_pred CCCcchhhhHHHHHhcCCcccc-CchHHHHHHhhc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEhHHHH
Confidence 8888532211111113565554 699999999997 467887777665543322 578
Q ss_pred HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048376 120 YSLMYGITSRAAFGNRSRDQEAFASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKR 199 (221)
Q Consensus 120 ~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 199 (221)
.++++++|++++||.+++..+.+...+..+............+|++++++ .+..+++.+..+.+.+++.+.|+++++.
T Consensus 204 ~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p--~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 281 (516)
T PLN02290 204 TRLTADIISRTEFDSSYEKGKQIFHLLTVLQRLCAQATRHLCFPGSRFFP--SKYNREIKSLKGEVERLLMEIIQSRRDC 281 (516)
T ss_pred HHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHhhhhhcCchhhhCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998765544444433333221111112346554432 2234556667788999999999998876
Q ss_pred hhhhhhccCCCCCcHHHHhhc
Q 048376 200 KATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 200 ~~~~~~~~~~~~~d~ld~ll~ 220 (221)
.+... ......|++|.||+
T Consensus 282 ~~~~~--~~~~~~d~l~~ll~ 300 (516)
T PLN02290 282 VEIGR--SSSYGDDLLGMLLN 300 (516)
T ss_pred hhccc--CCCCCCCHHHHHHH
Confidence 54310 01135799998874
No 12
>PLN02966 cytochrome P450 83A1
Probab=99.94 E-value=3.3e-25 Score=190.30 Aligned_cols=215 Identities=29% Similarity=0.560 Sum_probs=147.1
Q ss_pred CCCCcccccccccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCCCc
Q 048376 1 PWKLPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNYRD 80 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~~~ 80 (221)
|+++|++||++++....++..+.+|.++||++|++++|+.++|+|+||+++++++.+++..|.+||..........+..+
T Consensus 34 p~~~p~~G~l~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~p~~i~~vl~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (502)
T PLN02966 34 PSPLPVIGNLLQLQKLNPQRFFAGWAKKYGPILSYRIGSRTMVVISSAELAKELLKTQDVNFADRPPHRGHEFISYGRRD 113 (502)
T ss_pred CCCCCeeccHHhcCCCChhHHHHHHHHHhCCeEEEecCCCcEEEECCHHHHHHHHHhCcccccCCCCCccceeeccCcce
Confidence 45699999999984446788999999999999999999999999999999999999988899998854332222222233
Q ss_pred eeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH----------------------HHHHHHHHHHHHHHHhCCCCCC
Q 048376 81 IVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK----------------------SKIYSLMYGITSRAAFGNRSRD 138 (221)
Q Consensus 81 ~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~----------------------~~~~~~~~~vi~~~~fG~~~~~ 138 (221)
+.+..+|+.|+.+|++++.+.|+++.+..+.+++++ +.+.++++++|+.++||.+++.
T Consensus 114 ~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vdl~~~~~~~t~dvi~~~~fG~~~~~ 193 (502)
T PLN02966 114 MALNHYTPYYREIRKMGMNHLFSPTRVATFKHVREEEARRMMDKINKAADKSEVVDISELMLTFTNSVVCRQAFGKKYNE 193 (502)
T ss_pred eeeCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeHHHHHHHHHHHHHHHHHhCCccCc
Confidence 445557999999999966788888776655443332 6788999999999999998864
Q ss_pred hh----HHHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcH
Q 048376 139 QE----AFASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDL 214 (221)
Q Consensus 139 ~~----~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ 214 (221)
.+ .+.+.+...........+.+++|++.++..+.+..+......+...+++.+.+++..+.... . .+..|+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~--~~~~~~ 268 (502)
T PLN02966 194 DGEEMKRFIKILYGTQSVLGKIFFSDFFPYCGFLDDLSGLTAYMKECFERQDTYIQEVVNETLDPKRV---K--PETESM 268 (502)
T ss_pred cchHHHHHHHHHHHHHHHhCcccHHHhhchhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhcccc---c--cccccH
Confidence 22 33333333333333333455667554332122223333445566777777777766543211 1 124688
Q ss_pred HHHhhc
Q 048376 215 VDVLLK 220 (221)
Q Consensus 215 ld~ll~ 220 (221)
+|.++.
T Consensus 269 l~~l~~ 274 (502)
T PLN02966 269 IDLLME 274 (502)
T ss_pred HHHHHH
Confidence 888763
No 13
>PTZ00404 cytochrome P450; Provisional
Probab=99.93 E-value=1.9e-24 Score=184.82 Aligned_cols=208 Identities=23% Similarity=0.395 Sum_probs=142.6
Q ss_pred CCCCcccccccccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCCCc
Q 048376 1 PWKLPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNYRD 80 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~~~ 80 (221)
|+++|++||++++ ...++..+.+|.++||+||++++|+.++|+++||+++++++.++...|.+||..+...... .+.+
T Consensus 34 p~~~p~~G~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~~~~~~-~~~~ 111 (482)
T PTZ00404 34 PIPIPILGNLHQL-GNLPHRDLTKMSKKYGGIFRIWFADLYTVVLSDPILIREMFVDNFDNFSDRPKIPSIKHGT-FYHG 111 (482)
T ss_pred CCCCCeeccHhhh-cccHHHHHHHHHHHhCCeeEEEecCCCEEEECCHHHHHHHHHhcchhhcCCCCcceeeeec-cCCc
Confidence 5679999999998 4577899999999999999999999999999999999999998888899998654332211 1456
Q ss_pred eeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH----------------------HHHHHHHHHHHHHHHhCCCCCC
Q 048376 81 IVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK----------------------SKIYSLMYGITSRAAFGNRSRD 138 (221)
Q Consensus 81 ~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~----------------------~~~~~~~~~vi~~~~fG~~~~~ 138 (221)
++.+ +|+.|+++|+++. +.|+...++.+.+.+.+ ..+.++++++|++++||.++..
T Consensus 112 l~~~-~g~~w~~~Rk~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fG~~~~~ 189 (482)
T PTZ00404 112 IVTS-SGEYWKRNREIVG-KAMRKTNLKHIYDLLDDQVDVLIESMKKIESSGETFEPRYYLTKFTMSAMFKYIFNEDISF 189 (482)
T ss_pred eecc-ChHHHHHHHHHHH-HHHhhhccccHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHhcccccc
Confidence 5544 7999999999974 56665544444322211 6889999999999999998753
Q ss_pred h--------hHHHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCC
Q 048376 139 Q--------EAFASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGD 210 (221)
Q Consensus 139 ~--------~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 210 (221)
. ..+...+..++.........+++|++.++ +..+.....+..+.+.+++.+.+++++++.++ . .
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~---~ 261 (482)
T PTZ00404 190 DEDIHNGKLAELMGPMEQVFKDLGSGSLFDVIEITQPL--YYQYLEHTDKNFKKIKKFIKEKYHEHLKTIDP---E---V 261 (482)
T ss_pred ccccchhHHHHHHHHHHHHHHHhCCCchhhhhhHhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---C---C
Confidence 1 23445555554443332223333333321 11111223345667777888877777664322 1 3
Q ss_pred CCcHHHHhhc
Q 048376 211 DEDLVDVLLK 220 (221)
Q Consensus 211 ~~d~ld~ll~ 220 (221)
++|++|.|++
T Consensus 262 ~~dll~~ll~ 271 (482)
T PTZ00404 262 PRDLLDLLIK 271 (482)
T ss_pred cccHHHHHHH
Confidence 5789998874
No 14
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.92 E-value=1.7e-23 Score=179.81 Aligned_cols=217 Identities=29% Similarity=0.511 Sum_probs=139.3
Q ss_pred CCCCcccccccccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCCCc
Q 048376 1 PWKLPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNYRD 80 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~~~ 80 (221)
|+++|++||++++.....+..+.+|.++||+||++|+|++++|+|+||++++++++++++.|.+||.......+...+.+
T Consensus 35 p~~~p~~g~l~~~~~~~~~~~~~~~~~~yG~v~~i~~g~~~~v~v~dpe~i~~il~~~~~~~~~r~~~~~~~~~~g~~~~ 114 (503)
T PLN02394 35 PAAVPIFGNWLQVGDDLNHRNLAEMAKKYGDVFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQD 114 (503)
T ss_pred CCCCCeeeeHHhcCCCchhHHHHHHHHHhCCeEEEEcCCeeEEEeCCHHHHHHHHHhCCccccCCCCcchHhHhccCCCc
Confidence 56799999999884333578899999999999999999999999999999999999999899999864444444322334
Q ss_pred eeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH-----------------------HHHHHHHHHHHHHHHhCCCCC
Q 048376 81 IVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK-----------------------SKIYSLMYGITSRAAFGNRSR 137 (221)
Q Consensus 81 ~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~-----------------------~~~~~~~~~vi~~~~fG~~~~ 137 (221)
.++..+|+.|+++||.+..++|+.+.++.+...+++ +.+.++++++|++++||.+++
T Consensus 115 ~l~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~i~~~v~~lv~~l~~~~~~~~~~v~~~~~~~~~~~dvi~~~~fG~~~~ 194 (503)
T PLN02394 115 MVFTVYGDHWRKMRRIMTVPFFTNKVVQQYRYGWEEEADLVVEDVRANPEAATEGVVIRRRLQLMMYNIMYRMMFDRRFE 194 (503)
T ss_pred eeecCCCHHHHHHHHHHHHHhcChHHHHHhhHHHHHHHHHHHHHHHHhhhccCCcEecHHHHHHHHHHHHHHHHhCCCcc
Confidence 566668999999999976577887666654332221 467799999999999999886
Q ss_pred Chh-HHH----HHHHHHHHHcCC--CccccccccccchhhhhchHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhccCC
Q 048376 138 DQE-AFA----SVRGEITKLMSG--FNIADMFPSVGLLQWLTGYKSQVEKLHQEADR-IVKNIINEHKKRKATLKICKIG 209 (221)
Q Consensus 138 ~~~-~~~----~~~~~~~~~~~~--~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~ 209 (221)
..+ ... ....+....... ..+.+++|++.+. +....+........... +.+..++++++..+..+ .+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~ 271 (503)
T PLN02394 195 SEDDPLFLKLKALNGERSRLAQSFEYNYGDFIPILRPF--LRGYLKICQDVKERRLALFKDYFVDERKKLMSAKG-MDKE 271 (503)
T ss_pred cccchhHHHHHHHHHHHHHHhcccccchhhhchHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCcc
Confidence 422 211 122222222211 1233455654321 11222222222232233 33446777665432100 0011
Q ss_pred CCCcHHHHhhc
Q 048376 210 DDEDLVDVLLK 220 (221)
Q Consensus 210 ~~~d~ld~ll~ 220 (221)
..+|++|.|++
T Consensus 272 ~~~d~l~~ll~ 282 (503)
T PLN02394 272 GLKCAIDHILE 282 (503)
T ss_pred hhhhHHHHHHh
Confidence 34799999885
No 15
>PLN02500 cytochrome P450 90B1
Probab=99.91 E-value=8.7e-23 Score=174.88 Aligned_cols=204 Identities=13% Similarity=0.206 Sum_probs=135.6
Q ss_pred CCCCcccccccccCC----CCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhc
Q 048376 1 PWKLPLIGNLHQLAG----SLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISY 76 (221)
Q Consensus 1 P~~~PiiGnl~~l~~----~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~ 76 (221)
|+++|++||++++.. +.++..+.+|+++||++|++++|++++|||+||++++++|++++..|++|........+
T Consensus 43 p~~~PiiGn~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~vl~~~~~~f~~~~~~~~~~~~-- 120 (490)
T PLN02500 43 NMGWPFLGETIGYLKPYSATSIGEFMEQHISRYGKIYRSNLFGEPTIVSADAGLNRFILQNEGRLFECSYPRSIGGIL-- 120 (490)
T ss_pred CcCCCchhhHHHHHhhcccCChHHHHHHHHHHhcccccccccCCCeEEecCHHHHHHHHhCCCCeEEeeCchHHHHHh--
Confidence 456999999876421 23456789999999999999999999999999999999999999889766432222223
Q ss_pred CCCceeeCCCChHHHHHHHHHHHhhcCHHHHHH-hHHHHHH------------------HHHHHHHHHHHHHHHhCCCCC
Q 048376 77 NYRDIVFSPYGDSWKQLRKICVSELLSAKRVQS-FQSIREK------------------SKIYSLMYGITSRAAFGNRSR 137 (221)
Q Consensus 77 ~~~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~-~~~i~~~------------------~~~~~~~~~vi~~~~fG~~~~ 137 (221)
++.++++. +|+.||++||++. +.|+...++. +...+++ +.+.++++++|++++||.+.+
T Consensus 121 g~~~~~~~-~g~~wr~~Rk~~~-~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~vi~~~~fg~~~~ 198 (490)
T PLN02500 121 GKWSMLVL-VGDMHRDMRSISL-NFLSHARLRTHLLKEVERHTLLVLDSWKENSTFSAQDEAKKFTFNLMAKHIMSMDPG 198 (490)
T ss_pred Cccccccc-CCHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHHHHHHhCCCCCEEehHHHHHHHHHHHHHHHhCCCCC
Confidence 22355555 6999999999975 6677665554 2211111 778999999999999998865
Q ss_pred Chh--HHHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHH
Q 048376 138 DQE--AFASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLV 215 (221)
Q Consensus 138 ~~~--~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~l 215 (221)
..+ .+.....+........ ...+|.. ..++..+..+.+.+++.+.++++++..+.+ .......|++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~--~~~~p~~--------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~d~l 266 (490)
T PLN02500 199 EEETEQLKKEYVTFMKGVVSA--PLNFPGT--------AYRKALKSRATILKFIERKMEERIEKLKEE--DESVEEDDLL 266 (490)
T ss_pred chHHHHHHHHHHHHHhhhhcc--hhcCCCc--------ccHHHHHHHHHHHHHHHHHHHHHHHhhhcc--cCCCCcchHH
Confidence 322 2322222222211100 0112221 123455667888999999999988754331 1001357999
Q ss_pred HHhhc
Q 048376 216 DVLLK 220 (221)
Q Consensus 216 d~ll~ 220 (221)
|.+++
T Consensus 267 ~~ll~ 271 (490)
T PLN02500 267 GWVLK 271 (490)
T ss_pred HHHHh
Confidence 99874
No 16
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.91 E-value=6.7e-24 Score=178.74 Aligned_cols=211 Identities=27% Similarity=0.497 Sum_probs=153.2
Q ss_pred CCCCcccccccccCC-CCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhh--hhcC
Q 048376 1 PWKLPLIGNLHQLAG-SLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQI--ISYN 77 (221)
Q Consensus 1 P~~~PiiGnl~~l~~-~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~--~~~~ 77 (221)
|+++|++||++++.. +.++..+.+|.++||+||++++|++++|+|+||+++++++.++...|++|+....... ....
T Consensus 4 p~~~p~~G~~~~~~~~~~~~~~~~~~~~kyG~i~~~~~~~~~~vvv~~pe~~~~il~~~~~~~~~~~~~~~~~~~~~~~~ 83 (463)
T PF00067_consen 4 PPPLPILGNLLQFRRKGNPHEFFRELHKKYGPIFRIWPGGQPIVVVSDPELIKEILRSRSKYFSFRPRPPWFEIFRGPFG 83 (463)
T ss_dssp SSSBTTTBTHHHHHTTHHHHHHHHHHHHHHTSEEEEEETTEEEEEEESHHHHHHHHTTTTTTEEEEHCHHHHHHHHHHHT
T ss_pred CCCcCceeEHHHhcCCCcHHHHHHHHHHHhCCEEEEeEecccccccccchhhcccccccccccccccccccccccccccc
Confidence 567999999999842 4667889999999999999999999999999999999999999888999865433332 1123
Q ss_pred CCceeeCCCChHHHHHHHHHHHhhcCHH-HHHHhHHHHHH----------------------HHHHHHHHHHHHHHHhCC
Q 048376 78 YRDIVFSPYGDSWKQLRKICVSELLSAK-RVQSFQSIREK----------------------SKIYSLMYGITSRAAFGN 134 (221)
Q Consensus 78 ~~~~~~~~~g~~Wk~~Rr~~~~~~~~~~-~~~~~~~i~~~----------------------~~~~~~~~~vi~~~~fG~ 134 (221)
+.++++. .|+.|+.+|+++... ++.. .+ .+..++++ +.+..++.++|+.++||.
T Consensus 84 ~~~l~~~-~~~~~~~~R~~~~~~-~~~~~~~-~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~d~i~~~~fG~ 160 (463)
T PF00067_consen 84 GKGLFFS-DGERWRRQRRLLAPA-FSSKKIL-KLEPLIDEEAEELIDQLRKKAGSSGPVDLFDWLRRFALDVIGRVLFGK 160 (463)
T ss_dssp TTSSTTS-SHHHHHHHHHHHHHH-HSHHHHH-HHHHHHHHHHHHHHHHHHHTTTSESEEEHHHHHHHHHHHHHHHHHHSS
T ss_pred ccccccc-ccccccccccccccc-ccccccc-ccccccccccccccccccccccccceeeeecccccccccccccccccc
Confidence 5566655 579999999997654 4444 33 33333322 679999999999999999
Q ss_pred CCC-Chh----HHHHHHHHHHHHcCCC--ccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 048376 135 RSR-DQE----AFASVRGEITKLMSGF--NIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICK 207 (221)
Q Consensus 135 ~~~-~~~----~~~~~~~~~~~~~~~~--~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 207 (221)
++. .++ ++.+.+..+....... .+...+|+++++ +....+...+..+.+.+++.+.++++++..+. .
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~- 234 (463)
T PF00067_consen 161 DFGSLDDEDFEEFLEAFDELFELLSNFFWNLPFFFPWLKYL--PTPLFRRFKRARDRLRKYIKEIIEERREELDD---G- 234 (463)
T ss_dssp HHHGTTHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHS---S-
T ss_pred eeeeccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccc---c-
Confidence 865 222 3555555555443221 234556755544 23345666677888999999999999988764 1
Q ss_pred CCCCCcHHHHhhc
Q 048376 208 IGDDEDLVDVLLK 220 (221)
Q Consensus 208 ~~~~~d~ld~ll~ 220 (221)
.....|+++.+|.
T Consensus 235 ~~~~~d~l~~ll~ 247 (463)
T PF00067_consen 235 DESRRDLLDSLLQ 247 (463)
T ss_dssp SSSCSSHHHHHHH
T ss_pred ccccccccccccc
Confidence 1257899999874
No 17
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=7.2e-23 Score=171.85 Aligned_cols=205 Identities=21% Similarity=0.349 Sum_probs=131.2
Q ss_pred CCCCcccccccccCCC--CccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCC--CCCchhh-hhh
Q 048376 1 PWKLPLIGNLHQLAGS--LPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASR--PHFPPAQ-IIS 75 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~--~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~R--p~~~~~~-~~~ 75 (221)
|+|+|++||+..+... ........|.++ |++++++.|.+|+++|+|||+||++++|+.++|+|| |...... .+
T Consensus 36 ~~p~p~~Gn~~~~~~~~~~~~~~~~~~~~~-~~~~G~y~~~~p~l~v~D~elik~I~ik~F~~F~~r~~~~~~d~~~~l- 113 (499)
T KOG0158|consen 36 PKPLPFLGNLPGMLKRERPGDLLLDIYTKY-RPVVGIYEGRQPALLVSDPELIKEILIKDFDNFYNRKRPIYGDPEDPL- 113 (499)
T ss_pred CCCCCcEecHHHHHhccCcHHHHHHHHhcC-CCEEEEEecCCcceEecCHHHHHHHHHHhCccCcCCCCCCcCCCCCcc-
Confidence 6789999999887432 223344556665 999999999999999999999999999999999995 4322222 12
Q ss_pred cCCCceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH----------------------HHHHHHHHHHHHHHHhC
Q 048376 76 YNYRDIVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK----------------------SKIYSLMYGITSRAAFG 133 (221)
Q Consensus 76 ~~~~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~----------------------~~~~~~~~~vi~~~~fG 133 (221)
....++..+|++||++|..+ ++.|++++++.+.+++++ +.+.++|++||.+++||
T Consensus 114 --~~~~Lf~~~g~~WK~lR~~l-sP~Fts~kmk~m~~t~~~~~~~l~~~l~~~~~~~~~~~~~dl~~~yT~DVI~~~AfG 190 (499)
T KOG0158|consen 114 --SALNLFFLRGERWKRLRTKL-SPTFTSGKLKKMFPTMEEVGDELVRHLRRKSEGGQEGEIKDLCARYTTDVIGSCAFG 190 (499)
T ss_pred --cccCchhccCchHHHHHHhh-ccccchhhHHHHHHHHHHHHHHHHHHHHHhhcccCCccHHHHHHHHHHHHHhHhhcc
Confidence 22334556899999999996 578998888766555443 56778999999999999
Q ss_pred CCCCCh----hHHHHHHHHHHHH-cCCCc----cccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 048376 134 NRSRDQ----EAFASVRGEITKL-MSGFN----IADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLK 204 (221)
Q Consensus 134 ~~~~~~----~~~~~~~~~~~~~-~~~~~----~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 204 (221)
.+++.- +.|.......... ...+. ....+|.+... + +.........+++.+.+.++.+....
T Consensus 191 ~~~~s~~d~~~~F~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~--l-----~~~~~~~~~~~~~~~~v~~~v~~R~~-- 261 (499)
T KOG0158|consen 191 LDANSLRDPKAEFRRMGRRAFFLSRGLFPLKFMLIFLFPKLALP--L-----RVKLFPEDVTDFFRKLVNSRVEQREK-- 261 (499)
T ss_pred cchhhhcCchHHHHHhhHHHHHHhhccchHhHhHHHHhHHHHHh--h-----hcccChHHHHHHHHHHHHHHHHHHHh--
Confidence 988642 2555444333333 11111 11222332211 0 11112223334444444444433321
Q ss_pred hccCCCCCcHHHHhhcC
Q 048376 205 ICKIGDDEDLVDVLLKI 221 (221)
Q Consensus 205 ~~~~~~~~d~ld~ll~~ 221 (221)
++..+.||+|.||++
T Consensus 262 --~~~~r~Dfi~lll~~ 276 (499)
T KOG0158|consen 262 --ENIERNDFIDLLLDA 276 (499)
T ss_pred --cCCCCchHHHHHHHh
Confidence 113689999999864
No 18
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.89 E-value=7.6e-22 Score=167.47 Aligned_cols=206 Identities=17% Similarity=0.234 Sum_probs=134.7
Q ss_pred CCCCcccccccccCC----CCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhc
Q 048376 1 PWKLPLIGNLHQLAG----SLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISY 76 (221)
Q Consensus 1 P~~~PiiGnl~~l~~----~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~ 76 (221)
|+++|+|||++++.. ..++..+.+|+++||+||++|+|++++|||+||++++++|++++..|++|... ....+.
T Consensus 12 ~~~~P~iG~~~~l~~~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvv~~p~~~~~vl~~~~~~~~~~~~~-~~~~l~- 89 (452)
T PLN03141 12 SLGWPVIGETLDFISCAYSSRPESFMDKRRSLYGKVFKSHIFGTPTIVSTDAEVNKVVLQSDGNAFVPAYPK-SLTELM- 89 (452)
T ss_pred CCCCCchhhHHHHHhhcccCChHHHHHHHHHHhhheeeeccCCCCEEEEeCHHHhhHHHhCCCCeeeccCch-hHHHHh-
Confidence 446999999999732 35778889999999999999999999999999999999999999999888532 233332
Q ss_pred CCCceeeCCCChHHHHHHHHHHHhhcCHHHHHHh-H----HHH----HH----------HHHHHHHHHHHHHHHhCCCCC
Q 048376 77 NYRDIVFSPYGDSWKQLRKICVSELLSAKRVQSF-Q----SIR----EK----------SKIYSLMYGITSRAAFGNRSR 137 (221)
Q Consensus 77 ~~~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~-~----~i~----~~----------~~~~~~~~~vi~~~~fG~~~~ 137 (221)
+..++.+. +|+.||++|+++. ..|+...+... . ... +. +.+..++++||++++||.+..
T Consensus 90 g~~~~~~~-~g~~wr~~r~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~G~~~~ 167 (452)
T PLN03141 90 GKSSILLI-NGSLQRRVHGLIG-AFLKSPHLKAQITRDMERYVSESLDSWRDDPPVLVQDETKKIAFEVLVKALISLEPG 167 (452)
T ss_pred Cccccccc-CcHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHHHHHHhccCCCCEEhHHHHHHHHHHHHHHHHcCCCch
Confidence 22355554 6999999999975 45554333321 1 111 10 678899999999999998764
Q ss_pred Ch-hHHHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHH
Q 048376 138 DQ-EAFASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVD 216 (221)
Q Consensus 138 ~~-~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld 216 (221)
.+ +.+...+..+.... ..+|.. ++ .....+..+..+++.+++.++|+++++..+.+...++..+.|++|
T Consensus 168 ~~~~~~~~~~~~~~~~~------~~~~~~--~p--~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~d~l~ 237 (452)
T PLN03141 168 EEMEFLKKEFQEFIKGL------MSLPIK--LP--GTRLYRSLQAKKRMVKLVKKIIEEKRRAMKNKEEDETGIPKDVVD 237 (452)
T ss_pred HHHHHHHHHHHHHhhhH------HhCccC--CC--chHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCChhhHHH
Confidence 32 22322222222211 112311 11 111234446688899999999999887653210000012579999
Q ss_pred Hhhc
Q 048376 217 VLLK 220 (221)
Q Consensus 217 ~ll~ 220 (221)
.++.
T Consensus 238 ~ll~ 241 (452)
T PLN03141 238 VLLR 241 (452)
T ss_pred HHHh
Confidence 8874
No 19
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.89 E-value=1.1e-21 Score=167.07 Aligned_cols=202 Identities=12% Similarity=0.258 Sum_probs=138.6
Q ss_pred CCCCcccccccccCC----CCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhc
Q 048376 1 PWKLPLIGNLHQLAG----SLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISY 76 (221)
Q Consensus 1 P~~~PiiGnl~~l~~----~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~ 76 (221)
|.++|++||++++.. ++++..+.+|+++||++|++++|++++|+|+||++++++|+++.+.|++|+.......+
T Consensus 35 p~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~l~~~~~vvv~~pe~~~~il~~~~~~f~~~~~~~~~~~l-- 112 (472)
T PLN02987 35 SLGLPLVGETLQLISAYKTENPEPFIDERVARYGSLFMTHLFGEPTVFSADPETNRFILQNEGKLFECSYPGSISNLL-- 112 (472)
T ss_pred CcCCCchhhHHHHHhhcccCChHHHHHHHHHHhchhhhhhhcCCCeEEEeCHHHHHHHHhCCCceEEecCcHHHHHHh--
Confidence 456999999998732 34677889999999999999999999999999999999999999999877542233333
Q ss_pred CCCceeeCCCChHHHHHHHHHHHhhcCHHHHHHhH-----HH----HHH--------HHHHHHHHHHHHHHHhCCCCCC-
Q 048376 77 NYRDIVFSPYGDSWKQLRKICVSELLSAKRVQSFQ-----SI----REK--------SKIYSLMYGITSRAAFGNRSRD- 138 (221)
Q Consensus 77 ~~~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~-----~i----~~~--------~~~~~~~~~vi~~~~fG~~~~~- 138 (221)
++.+++++ +|+.||++|+++. ++++.+.++.+. .+ .+. +.+.+++++||++++||.+.+.
T Consensus 113 g~~~l~~~-~g~~wr~~R~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~t~~vi~~~~fg~~~~~~ 190 (472)
T PLN02987 113 GKHSLLLM-KGNLHKKMHSLTM-SFANSSIIKDHLLLDIDRLIRFNLDSWSSRVLLMEEAKKITFELTVKQLMSFDPGEW 190 (472)
T ss_pred Cccccccc-CcHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHHHHHhhccceehHHHHHHHHHHHHHHHHcCCCChHH
Confidence 23466666 6999999999964 554433332211 11 110 6788999999999999987643
Q ss_pred hhHHHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHh
Q 048376 139 QEAFASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVL 218 (221)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~l 218 (221)
.+.+...+...... . ....+|++ .+..++..+..+++.+++.++|+++++.... + .....|+++.|
T Consensus 191 ~~~~~~~~~~~~~~---~-~~~~~p~l------~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~---~-~~~~~d~l~~l 256 (472)
T PLN02987 191 TESLRKEYVLVIEG---F-FSVPLPLF------STTYRRAIQARTKVAEALTLVVMKRRKEEEE---G-AEKKKDMLAAL 256 (472)
T ss_pred HHHHHHHHHHHHhh---h-hcCCCcCC------CchHHHHHHHHHHHHHHHHHHHHHHHhhhhc---c-CcccccHHHHH
Confidence 22332222222111 1 12234543 1234667778899999999999998875432 1 01357999998
Q ss_pred hc
Q 048376 219 LK 220 (221)
Q Consensus 219 l~ 220 (221)
++
T Consensus 257 l~ 258 (472)
T PLN02987 257 LA 258 (472)
T ss_pred Hh
Confidence 75
No 20
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.88 E-value=2.6e-21 Score=164.64 Aligned_cols=198 Identities=19% Similarity=0.335 Sum_probs=135.7
Q ss_pred CCCCcccccccccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCCCc
Q 048376 1 PWKLPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNYRD 80 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~~~ 80 (221)
|+++|++||++++..++++..+.+|+++||+++++|+|++++|+|+||+++++++.++.+.| ||..+.......+..+
T Consensus 40 p~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~--~~~~~~~~~~~~g~~~ 117 (463)
T PLN02196 40 TMGWPYVGETFQLYSQDPNVFFASKQKRYGSVFKTHVLGCPCVMISSPEAAKFVLVTKSHLF--KPTFPASKERMLGKQA 117 (463)
T ss_pred CCCCCccchHHHHHhcCHHHHHHHHHHHhhhhheeeecCCceEEEcCHHHHHHHHhCCCCcc--cccCchHHHHHcCccc
Confidence 34699999998864567888999999999999999999999999999999999999887777 4543322222222235
Q ss_pred eeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH-----------------HHHHHHHHHHHHHHHhCCCCCCh-hHH
Q 048376 81 IVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK-----------------SKIYSLMYGITSRAAFGNRSRDQ-EAF 142 (221)
Q Consensus 81 ~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~-----------------~~~~~~~~~vi~~~~fG~~~~~~-~~~ 142 (221)
+.+ .+|+.|+++||++. +.|+++.++.+.+.+++ +.+..++.++++.++||.+.... +.+
T Consensus 118 l~~-~~g~~w~~~Rk~l~-~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~fG~~~~~~~~~~ 195 (463)
T PLN02196 118 IFF-HQGDYHAKLRKLVL-RAFMPDAIRNMVPDIESIAQESLNSWEGTQINTYQEMKTYTFNVALLSIFGKDEVLYREDL 195 (463)
T ss_pred ccc-cCcHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHHHHcCCCCeEEeHHHHHHHHHHHHHHHHcCCCCchHHHHH
Confidence 544 46999999999975 67887777766544332 67999999999999999875422 222
Q ss_pred HHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 143 ASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
.... ..... ..+.+|+. ++ ....++..+..+.+.+++.+.|+++++.. . +..|+++.+++
T Consensus 196 ~~~~----~~~~~--~~~~~~~~--~p--~~~~~~~~~a~~~~~~~~~~~i~~~~~~~-----~---~~~d~l~~ll~ 255 (463)
T PLN02196 196 KRCY----YILEK--GYNSMPIN--LP--GTLFHKSMKARKELAQILAKILSKRRQNG-----S---SHNDLLGSFMG 255 (463)
T ss_pred HHHH----HHHhc--chhccccc--CC--CccchHHHHHHHHHHHHHHHHHHHHhhcC-----C---CcccHHHHHHh
Confidence 2211 11111 01123421 11 11234556677788888888888876531 1 35789888763
No 21
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.88 E-value=2.2e-21 Score=166.47 Aligned_cols=210 Identities=14% Similarity=0.212 Sum_probs=135.5
Q ss_pred CCCCcccccccccCCCCccHHHHHHHhh----cCCceE---EEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhh
Q 048376 1 PWKLPLIGNLHQLAGSLPHHRLRDLTNK----YGPLML---LQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQI 73 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~~~~~~~~~~~----YG~i~~---l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~ 73 (221)
|+++|++||++++..+. .. +.+|..+ ||..+. .|+|+.|+|+|+||++|+++|+++.++|.+++.......
T Consensus 36 p~~~pl~G~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~vvv~dpe~i~~il~~~~~~~~k~~~~~~~~~ 113 (500)
T PLN02169 36 LKNWPFLGMLPGMLHQI-PR-IYDWTVEVLEASNLTFYFKGPWLSGTDMLFTADPKNIHHILSSNFGNYPKGPEFKKIFD 113 (500)
T ss_pred CCCCCcccchHHHHHcc-Cc-HHHHHHHHHHhCCCcEEEEeeccCCCCeEEEcCHHHHHHHHhhCcccCCCcHHHHHHHH
Confidence 67899999998873332 22 5555554 886554 789999999999999999999998888888764222222
Q ss_pred hhcCCCceeeCCCChHHHHHHHHHHHhhcCHHHHHHh--HH--------H---HHH-----------HHHHHHHHHHHHH
Q 048376 74 ISYNYRDIVFSPYGDSWKQLRKICVSELLSAKRVQSF--QS--------I---REK-----------SKIYSLMYGITSR 129 (221)
Q Consensus 74 ~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~--~~--------i---~~~-----------~~~~~~~~~vi~~ 129 (221)
+ .|.|++++ +|+.||.+||++. +.|+...+... .. + .++ +.+.+++++||++
T Consensus 114 ~--~g~gl~~~-~g~~Wr~~Rk~l~-p~F~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~dvi~~ 189 (500)
T PLN02169 114 V--LGEGILTV-DFELWEDLRKSNH-ALFHNQDFIELSLSSNKSKLKEGLVPFLDNAAHENIIIDLQDVFMRFMFDTSSI 189 (500)
T ss_pred h--hcCccccc-CcHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEeHHHHHHHHHHHHHHh
Confidence 2 25677666 5999999999974 77765543211 01 1 110 6899999999999
Q ss_pred HHhCCCCCC-h-----hHHHHHHHHHHHHcCCCccccccccccc-h-hhh-hchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048376 130 AAFGNRSRD-Q-----EAFASVRGEITKLMSGFNIADMFPSVGL-L-QWL-TGYKSQVEKLHQEADRIVKNIINEHKKRK 200 (221)
Q Consensus 130 ~~fG~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~P~l~~-l-~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 200 (221)
++||.+.+. + +.+...+........ ...+.|++.+ + .++ .+..++..+..+.+++++.++|+++++..
T Consensus 190 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~r~~~~ 266 (500)
T PLN02169 190 LMTGYDPMSLSIEMLEVEFGEAADIGEEAIY---YRHFKPVILWRLQNWIGIGLERKMRTALATVNRMFAKIISSRRKEE 266 (500)
T ss_pred heeCCCccccCCCCCCCHHHHHHHHHHHHHH---hHHhccHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999987642 1 244444433332211 1223454322 1 122 23456777889999999999999988653
Q ss_pred hhhhhccCCCCCcHHHHhhc
Q 048376 201 ATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 201 ~~~~~~~~~~~~d~ld~ll~ 220 (221)
.... +.....+|+++.|++
T Consensus 267 ~~~~-~~~~~~~d~l~~ll~ 285 (500)
T PLN02169 267 ISRA-ETEPYSKDALTYYMN 285 (500)
T ss_pred hccc-cccCCCcCHHHHHHh
Confidence 2100 000124789998875
No 22
>PLN02936 epsilon-ring hydroxylase
Probab=99.87 E-value=7.1e-21 Score=162.98 Aligned_cols=214 Identities=16% Similarity=0.205 Sum_probs=142.3
Q ss_pred CCCcccccccccC----CCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcC
Q 048376 2 WKLPLIGNLHQLA----GSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYN 77 (221)
Q Consensus 2 ~~~PiiGnl~~l~----~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~ 77 (221)
.|||++|+.++.. ...++..+.+|.++|||||++++|+.++|+++||+++++++.+.++.|.+++.......+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~~~il~~~~~~f~~~~~~~~~~~~~-- 95 (489)
T PLN02936 18 SGIPVADAKLEDVTDLLGGALFLPLFKWMNEYGPVYRLAAGPRNFVVVSDPAIAKHVLRNYGSKYAKGLVAEVSEFLF-- 95 (489)
T ss_pred CCCccHHhHHhhHHHHhccHHHHHHHHHHHHcCCEEEEccCCccEEEEcCHHHHHHHHHhccccccCcchhhhhHHHh--
Confidence 3799999987753 2356889999999999999999999999999999999999998888998886432222222
Q ss_pred CCceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHH-HHHH----------------------HHHHHHHHHHHHHHHhCC
Q 048376 78 YRDIVFSPYGDSWKQLRKICVSELLSAKRVQSFQS-IREK----------------------SKIYSLMYGITSRAAFGN 134 (221)
Q Consensus 78 ~~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~-i~~~----------------------~~~~~~~~~vi~~~~fG~ 134 (221)
+.++++. +|+.||++||++ .+.|+...+..+.. ++.+ +.+.++++++|+.++||.
T Consensus 96 ~~~i~~~-~g~~wk~~Rk~l-~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~vd~~~~~~~~~~dvi~~~~fG~ 173 (489)
T PLN02936 96 GSGFAIA-EGELWTARRRAV-VPSLHRRYLSVMVDRVFCKCAERLVEKLEPVALSGEAVNMEAKFSQLTLDVIGLSVFNY 173 (489)
T ss_pred cCccccC-CchHHHHHHHhh-cCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHHcCC
Confidence 3455554 699999999996 46667655554321 2111 789999999999999999
Q ss_pred CCCC---hhHHHHHHHHHHHHcCCCccccccccccc--hhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc---
Q 048376 135 RSRD---QEAFASVRGEITKLMSGFNIADMFPSVGL--LQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKIC--- 206 (221)
Q Consensus 135 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~P~l~~--l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--- 206 (221)
+++. ++++...+........ ....+++|++.+ +.++.+..++..+..+.+.+++.+.++++++..+..+..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~l~~~~p~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~ 252 (489)
T PLN02936 174 NFDSLTTDSPVIQAVYTALKEAE-TRSTDLLPYWKVDFLCKISPRQIKAEKAVTVIRETVEDLVDKCKEIVEAEGEVIEG 252 (489)
T ss_pred CccccccCcHHHHHHHHHHHHHH-HhhhccchHHhhHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 9864 2234444333322211 111234454321 111222345666778888899999998887654321000
Q ss_pred c---CCCCCcHHHHhhc
Q 048376 207 K---IGDDEDLVDVLLK 220 (221)
Q Consensus 207 ~---~~~~~d~ld~ll~ 220 (221)
+ .....|+++.|++
T Consensus 253 ~~~~~~~~~d~l~~ll~ 269 (489)
T PLN02936 253 EEYVNDSDPSVLRFLLA 269 (489)
T ss_pred ccccccCchHHHHHHHh
Confidence 0 0124689988874
No 23
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.86 E-value=6.9e-20 Score=156.96 Aligned_cols=203 Identities=16% Similarity=0.274 Sum_probs=131.7
Q ss_pred CCCCcccccccccC----CCCccHHHHHHHhhcCC--ceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhh
Q 048376 1 PWKLPLIGNLHQLA----GSLPHHRLRDLTNKYGP--LMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQII 74 (221)
Q Consensus 1 P~~~PiiGnl~~l~----~~~~~~~~~~~~~~YG~--i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~ 74 (221)
|+++|++||++++. ..+++..+.+|.++||+ ++++++|+.++||++||+++++++.++ +.|.++........+
T Consensus 47 p~~~PilG~l~~~~~~~~~~~~~~~~~~~~~kyG~~~i~~~~~~~~~~vvv~~pe~~~~vl~~~-~~f~~~~~~~~~~~~ 125 (490)
T PLN02302 47 DLGWPVIGNMWSFLRAFKSSNPDSFIASFISRYGRTGIYKAFMFGQPTVLVTTPEACKRVLTDD-DAFEPGWPESTVELI 125 (490)
T ss_pred CCCCCccccHHHHHHhcccCCcHHHHHHHHHHhCCCcceeeecCCCCeEEEcCHHHHHHHHcCC-CccccCCchhHHHHh
Confidence 45699999998863 23567889999999997 799999999999999999999999866 566654322222222
Q ss_pred hcCCCceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH------------------HHHHHHHHHHHHHHHhCCCC
Q 048376 75 SYNYRDIVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK------------------SKIYSLMYGITSRAAFGNRS 136 (221)
Q Consensus 75 ~~~~~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~------------------~~~~~~~~~vi~~~~fG~~~ 136 (221)
+... +...+|+.|+++||++...+.+++.++.+.+.+++ +.+..++++++++++||.+.
T Consensus 126 --g~~~-~~~~~g~~w~~~R~~~~~~f~~~~~l~~~~~~i~~~v~~~~~~~~~~~~v~~~~~~~~~~~~vi~~~~~G~~~ 202 (490)
T PLN02302 126 --GRKS-FVGITGEEHKRLRRLTAAPVNGPEALSTYIPYIEENVKSCLEKWSKMGEIEFLTELRKLTFKIIMYIFLSSES 202 (490)
T ss_pred --cccc-ccccCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCEehHHHHHHHHHHHHHHHHcCCCC
Confidence 2223 33346999999999976444456666655544433 56789999999999999876
Q ss_pred CChh-HHHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHH
Q 048376 137 RDQE-AFASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLV 215 (221)
Q Consensus 137 ~~~~-~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~l 215 (221)
+... .+............. . ...+|.. ...+..+..+.+.+++.+.++++++..+. +......|++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~-~-~~~~p~~--------~~~~~~~~~~~l~~~~~~~i~~~~~~~~~---~~~~~~~d~l 269 (490)
T PLN02302 203 ELVMEALEREYTTLNYGVRA-M-AINLPGF--------AYHRALKARKKLVALFQSIVDERRNSRKQ---NISPRKKDML 269 (490)
T ss_pred hHHHHHHHHHHHHHHHHhhh-C-CcCCCch--------hhHHHHHHHHHHHHHHHHHHHHHHHhhhc---cCCCCcCCHH
Confidence 5422 222222111111100 0 0011211 12344456677888999999888765432 1111357999
Q ss_pred HHhhc
Q 048376 216 DVLLK 220 (221)
Q Consensus 216 d~ll~ 220 (221)
|.|++
T Consensus 270 ~~ll~ 274 (490)
T PLN02302 270 DLLLD 274 (490)
T ss_pred HHHHh
Confidence 99874
No 24
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=99.85 E-value=2e-20 Score=160.14 Aligned_cols=209 Identities=21% Similarity=0.377 Sum_probs=143.6
Q ss_pred CCCCcccccccccCCC--CccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCc-hhhhhhcC
Q 048376 1 PWKLPLIGNLHQLAGS--LPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFP-PAQIISYN 77 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~--~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~-~~~~~~~~ 77 (221)
|+++|++||++++... .....+.++..+||++|..|+|+.|+|+++||+.++++|.++.+.+..-+..+ ......
T Consensus 40 p~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dp~~~~~Il~~~~~~~~k~~~~~~~~~~~l-- 117 (497)
T KOG0157|consen 40 PPGWPLIGNLLEFLKPLEEILDFVTELLSRYGPIFKTWLGGKPTVVTTDPELIEEILKSSNENYPKGPDYPESLKPWL-- 117 (497)
T ss_pred CCCCCcccchHHhhcchhHHHHHHHHHHHHcCchhhhhhcCeeEEEEcCHHHHHHHHhcCcccCCCchhHHHHHHHHh--
Confidence 5679999999998322 34567789999999999999999999999999999999965554444333322 333332
Q ss_pred CCceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH---------------------HHHHHHHHHHHHHHHhCCCC
Q 048376 78 YRDIVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK---------------------SKIYSLMYGITSRAAFGNRS 136 (221)
Q Consensus 78 ~~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~---------------------~~~~~~~~~vi~~~~fG~~~ 136 (221)
|.|++++. |+.|+++||++ .+.|+...++.+.....+ +.+.++++++||+++||...
T Consensus 118 G~gll~~~-g~~W~~~Rk~~-~~~f~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~tld~i~~~~~G~~~ 195 (497)
T KOG0157|consen 118 GDGLLFSD-GEKWHKHRKLL-TPAFHFEILKSFVPVFIESSLILLLLLELAASGEEVDLQDLLKRLTLDIICKTAMGPES 195 (497)
T ss_pred cCccccCC-chHHHHHHhhc-cHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEcHHHHHHHHHHHHHHHHhcCCcc
Confidence 45877776 99999999996 577887766655432221 78899999999999999333
Q ss_pred C--Ch---hHHHHHHHHHHHHcCCCccccccc-cccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCC
Q 048376 137 R--DQ---EAFASVRGEITKLMSGFNIADMFP-SVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGD 210 (221)
Q Consensus 137 ~--~~---~~~~~~~~~~~~~~~~~~~~~~~P-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 210 (221)
. .. .++..++..+...+.. ....| +..++..+. ..++..++.+.++++++++|+++++........+.+.
T Consensus 196 ~~~~~~~~~~~~~a~~~~~~~~~~---~~~~p~~~~~~~~~~-~~~~~~~a~~~~~~~~~~iI~~rr~~~~~~~~~~~~~ 271 (497)
T KOG0157|consen 196 LDAEGPELFEYVQAFDDLTELISK---RINLPLGTKFLYGLK-SERKLKKARKILHDFLEKIIRERREELEKEGSGEEKK 271 (497)
T ss_pred ccccCCcccHHHHHHHHHHHHHHH---HHcCchhhhHHhhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccch
Confidence 2 11 1566666554443221 12335 333332222 5688889999999999999999998765411100023
Q ss_pred CCcHHHH
Q 048376 211 DEDLVDV 217 (221)
Q Consensus 211 ~~d~ld~ 217 (221)
..||+|.
T Consensus 272 ~~d~L~~ 278 (497)
T KOG0157|consen 272 RLDFLDT 278 (497)
T ss_pred hhhHHHH
Confidence 5788884
No 25
>PLN02774 brassinosteroid-6-oxidase
Probab=99.85 E-value=4.2e-20 Score=157.30 Aligned_cols=197 Identities=15% Similarity=0.215 Sum_probs=133.0
Q ss_pred CCCCcccccccccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCCCc
Q 048376 1 PWKLPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNYRD 80 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~~~ 80 (221)
|+++|++||++.+ .++++..+.+|.++||++|++++|++++|+|+||+++++++.++.+.|..+........+ ++.+
T Consensus 36 p~~~P~~G~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~l--g~~~ 112 (463)
T PLN02774 36 TMGWPLFGETTEF-LKQGPDFMKNQRLRYGSFFKSHILGCPTIVSMDPELNRYILMNEGKGLVPGYPQSMLDIL--GTCN 112 (463)
T ss_pred CCCCCchhhHHHH-HHhhHHHHHHHHHHhccCccceecCCCeEEEeCHHHHHHHHcCCCCeEEecCCHHHHHHh--Cccc
Confidence 4569999999887 455667889999999999999999999999999999999999888887443222223223 2335
Q ss_pred eeeCCCChHHHHHHHHHHHhhcCHHHHHH-hHHHHHH------------------HHHHHHHHHHHHHHHhCCCCCCh-h
Q 048376 81 IVFSPYGDSWKQLRKICVSELLSAKRVQS-FQSIREK------------------SKIYSLMYGITSRAAFGNRSRDQ-E 140 (221)
Q Consensus 81 ~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~-~~~i~~~------------------~~~~~~~~~vi~~~~fG~~~~~~-~ 140 (221)
++. .+|+.|+.+|+++ .+.|++..++. +.+..++ +.+..+++++++.++||.+.+.. +
T Consensus 113 ~~~-~~g~~w~~~R~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 190 (463)
T PLN02774 113 IAA-VHGSTHRYMRGSL-LSLISPTMIRDHLLPKIDEFMRSHLSGWDGLKTIDIQEKTKEMALLSALKQIAGTLSKPISE 190 (463)
T ss_pred hhh-cCCHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHhhCCCCCEEeeHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 544 4699999999997 46788766653 3332222 56788999999999999875432 1
Q ss_pred HHHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 141 AFASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
.+.. .+....... ..+|. ++ +....++..+..+.+.+++.+.|+++++.. . .++|++|.+|+
T Consensus 191 ~~~~---~~~~~~~~~---~~~~~--~l--p~~~~~~~~~~~~~~~~~~~~~i~~r~~~~-----~---~~~d~l~~ll~ 252 (463)
T PLN02774 191 EFKT---EFFKLVLGT---LSLPI--DL--PGTNYRSGVQARKNIVRMLRQLIQERRASG-----E---THTDMLGYLMR 252 (463)
T ss_pred HHHH---HHHHHhccc---ccCCc--CC--CChhhhHHHHHHHHHHHHHHHHHHHHHhcC-----C---CcccHHHHHHh
Confidence 2222 222221111 01221 11 111234556678888899999998876531 1 35799998874
No 26
>PLN02738 carotene beta-ring hydroxylase
Probab=99.85 E-value=5.7e-20 Score=161.03 Aligned_cols=207 Identities=16% Similarity=0.199 Sum_probs=132.0
Q ss_pred cccccccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCCCceeeCCC
Q 048376 7 IGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNYRDIVFSPY 86 (221)
Q Consensus 7 iGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~ 86 (221)
+||+..+.....+..+.+|.++||||+++++|++++|+|+||+.+++++++++..|..++.......+ .+.++++. +
T Consensus 142 ~G~l~~i~~g~~~~~l~~lh~kYGpI~ri~lGp~~~vvIsDpe~i~eIl~~~~~~f~k~~~~~~~~~~--~g~~l~~~-d 218 (633)
T PLN02738 142 KGSISAVRGEAFFIPLYELFLTYGGIFRLTFGPKSFLIVSDPSIAKHILRDNSKAYSKGILAEILEFV--MGKGLIPA-D 218 (633)
T ss_pred cCcHHHhcCchHHHHHHHHHHHhCCEEEEEeCCCCEEEECCHHHHHHHHhhCcccCCCcchHHHHhhc--cCCceecC-C
Confidence 78888874445678999999999999999999999999999999999999888788877542222222 23465544 6
Q ss_pred ChHHHHHHHHHHHhhcCHHHHHHhHHHHHH----------------------HHHHHHHHHHHHHHHhCCCCCC---hhH
Q 048376 87 GDSWKQLRKICVSELLSAKRVQSFQSIREK----------------------SKIYSLMYGITSRAAFGNRSRD---QEA 141 (221)
Q Consensus 87 g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~----------------------~~~~~~~~~vi~~~~fG~~~~~---~~~ 141 (221)
|+.||.+|+.+ .+.|+.+.+..+.+++.+ ..+..++++||+.++||.+++. ++.
T Consensus 219 ge~wr~rRr~l-~p~Fs~~~v~~l~~~i~~~v~~L~~~L~~~~~~g~~vdl~~~~~~lt~DVI~~~~FG~~~~~~~~~~~ 297 (633)
T PLN02738 219 GEIWRVRRRAI-VPALHQKYVAAMISLFGQASDRLCQKLDAAASDGEDVEMESLFSRLTLDIIGKAVFNYDFDSLSNDTG 297 (633)
T ss_pred cHHHHHHHHhc-cHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeHHHHHHHHHHHHHHHHHhCCCccccccchH
Confidence 99999999997 477887766655443322 5788999999999999998863 234
Q ss_pred HHHHHHHHHHHcCCC----ccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----hccCCCCC
Q 048376 142 FASVRGEITKLMSGF----NIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLK-----ICKIGDDE 212 (221)
Q Consensus 142 ~~~~~~~~~~~~~~~----~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~ 212 (221)
+.+.+...+...... .....+|.++. ++++.++..+..+.+..++.++++.+++..+... ........
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---l~~~~~~~~~~~~~l~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~ 374 (633)
T PLN02738 298 IVEAVYTVLREAEDRSVSPIPVWEIPIWKD---ISPRQRKVAEALKLINDTLDDLIAICKRMVEEEELQFHEEYMNERDP 374 (633)
T ss_pred HHHHHHHHHHHHHHHhhcchhhhhhhHHhh---hchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhcccccccc
Confidence 444333332221110 01111232222 2223344555566666777777766544221100 00001235
Q ss_pred cHHHHhhc
Q 048376 213 DLVDVLLK 220 (221)
Q Consensus 213 d~ld~ll~ 220 (221)
|+++.|++
T Consensus 375 dil~~Ll~ 382 (633)
T PLN02738 375 SILHFLLA 382 (633)
T ss_pred hHHHHHHH
Confidence 88888874
No 27
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.83 E-value=3.3e-19 Score=153.71 Aligned_cols=210 Identities=14% Similarity=0.231 Sum_probs=134.0
Q ss_pred CCCCcccccccccCCCCccHHHHHHHhhc---CCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCc-hhhhhhc
Q 048376 1 PWKLPLIGNLHQLAGSLPHHRLRDLTNKY---GPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFP-PAQIISY 76 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~~~~~~~~~~~Y---G~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~-~~~~~~~ 76 (221)
|+++|++||++++.. .+..+.+|.++| |++|++++|++++|+|+||+++++++.++...|..++... ....+
T Consensus 35 p~~~p~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~~~-- 110 (516)
T PLN03195 35 PKSWPIIGAALEQLK--NYDRMHDWLVEYLSKDRTVVVKMPFTTYTYIADPVNVEHVLKTNFANYPKGEVYHSYMEVL-- 110 (516)
T ss_pred CCCCCeecchHHHHh--ccchHHHHHHHHhccCCcEEEeeCCCCceEecCHHHHHHHHhhCccccCCcHhHHHHHHHH--
Confidence 567999999977522 245688999998 8999999999999999999999999998766676554211 11122
Q ss_pred CCCceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHH-HH----------------------HHHHHHHHHHHHHHHhC
Q 048376 77 NYRDIVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIR-EK----------------------SKIYSLMYGITSRAAFG 133 (221)
Q Consensus 77 ~~~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~-~~----------------------~~~~~~~~~vi~~~~fG 133 (221)
.+.++.. .+|+.|+++||++ .+.|+...++.+.+.+ ++ +.+..++++||++++||
T Consensus 111 ~g~~l~~-~~g~~w~~~Rr~l-~~~fs~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fG 188 (516)
T PLN03195 111 LGDGIFN-VDGELWRKQRKTA-SFEFASKNLRDFSTVVFREYSLKLSSILSQASFANQVVDMQDLFMRMTLDSICKVGFG 188 (516)
T ss_pred hcCeeec-cCcHHHHHHHHhc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEcHHHHHHHHHHHHHHHHHhC
Confidence 1345544 5799999999996 4667766665543321 10 67889999999999999
Q ss_pred CCCCCh------hHHHHHHHHHHHHcCCCcccccccc--ccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 048376 134 NRSRDQ------EAFASVRGEITKLMSGFNIADMFPS--VGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKI 205 (221)
Q Consensus 134 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~P~--l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 205 (221)
.++... +.+.+.++........ .. +.|+ +..+ ...+..++..+..+.+.+++.+.+++++++......
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 264 (516)
T PLN03195 189 VEIGTLSPSLPENPFAQAFDTANIIVTL-RF--IDPLWKLKKF-LNIGSEALLSKSIKVVDDFTYSVIRRRKAEMDEARK 264 (516)
T ss_pred CCccccccCCCccHHHHHHHHHHHHHHH-HH--hcchhhHHHh-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 987531 2344444332221100 00 1122 1111 011223444567778888999999988765432100
Q ss_pred ccCCCCCcHHHHhhc
Q 048376 206 CKIGDDEDLVDVLLK 220 (221)
Q Consensus 206 ~~~~~~~d~ld~ll~ 220 (221)
.......|+++.++.
T Consensus 265 ~~~~~~~d~l~~ll~ 279 (516)
T PLN03195 265 SGKKVKHDILSRFIE 279 (516)
T ss_pred ccccccccHHHHHHh
Confidence 000135789998874
No 28
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.76 E-value=6.5e-17 Score=134.33 Aligned_cols=195 Identities=18% Similarity=0.291 Sum_probs=145.6
Q ss_pred CCCCccccccccc---CCCCccHHHHHHHhhcCCceEEE-cCCcCEEEeccHHHHHHHHHhCCCccCCCC-CCchh---h
Q 048376 1 PWKLPLIGNLHQL---AGSLPHHRLRDLTNKYGPLMLLQ-LGQVPAIIVSSPQVAKEVMKTHDVVFASRP-HFPPA---Q 72 (221)
Q Consensus 1 P~~~PiiGnl~~l---~~~~~~~~~~~~~~~YG~i~~l~-~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp-~~~~~---~ 72 (221)
|+++|++|.+..+ ..++.|....+..++|||||... +|+..+|.|.||++++.++...| .+.-|| ..+.. +
T Consensus 55 p~~~~~l~~l~~~~~~~~~~lh~~~~~~~~~YG~I~~~~~~G~~~~V~v~~p~d~E~v~r~EG-~~P~Rp~~~~~w~~~r 133 (519)
T KOG0159|consen 55 PKGLPFLGLLWIWRAGGATKLHQHIVQLHQKYGPIFREGMLGRVDLVHVYNPDDVEKVFRNEG-KYPFRPLLIEPWVAYR 133 (519)
T ss_pred CCCccHHHHHHHHHhhhhhHHHHHHHHHHHHcCceeeeccCCCCCeEEeeCHHHHHHHHhcCC-CCCCcccccchhhhhH
Confidence 5679999999843 12356788889999999999999 99999999999999999998766 567887 22222 2
Q ss_pred hhhcCCCceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH-------------------------HHHHHHHHHHH
Q 048376 73 IISYNYRDIVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK-------------------------SKIYSLMYGIT 127 (221)
Q Consensus 73 ~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~-------------------------~~~~~~~~~vi 127 (221)
....+..|++.. +|+.|++.|..+.+.++.++.++.|-+..++ +.+.+++...|
T Consensus 134 d~~~~~~Gl~~~-~G~~W~~~Rs~ln~~ll~P~~v~~yl~~l~~V~~DF~~~l~~~r~~~~~~~~~D~~~~l~~wslEsi 212 (519)
T KOG0159|consen 134 DFRGGVCGLFLL-EGPEWQRLRSALNPLLLQPQAVRRYLPQLNAVSDDFVERLRAQRDPERGELVPDFAQELYRWSLESI 212 (519)
T ss_pred HhhccCCCcccC-CCHHHHHHHHHhchhhcCHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 232233465554 6999999999998888888877766443332 68899999999
Q ss_pred HHHHhCCCCC---C-----hhHHHHHHHHHHHHcCCCccccccccc-cchhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048376 128 SRAAFGNRSR---D-----QEAFASVRGEITKLMSGFNIADMFPSV-GLLQWLTGYKSQVEKLHQEADRIVKNIINEHKK 198 (221)
Q Consensus 128 ~~~~fG~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~P~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 198 (221)
|.++||.+.- + .+.|.+++..++..+.. .++.|.+ +++ .++.+++..+..+.+.++.++.|++..+
T Consensus 213 ~~V~l~~rlG~L~~~~~~~a~~fi~ai~~~F~~s~~---l~~~p~l~r~~--~t~~wk~~~~~~D~i~~~~~~~Id~~l~ 287 (519)
T KOG0159|consen 213 CLVLLGTRLGLLGESPPSEAQQFIDAIKKMFESSAQ---LMLMPSLWRYF--PTKVWKDFVRAWDQIFDVGDKYIDNALE 287 (519)
T ss_pred HHHHHhcccccccCCCCHHHHHHHHHHHHHHHhHHH---HHhcchHHHhC--CChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999863 1 12677777777776544 3455644 333 3556688888888888898898988887
Q ss_pred hhhh
Q 048376 199 RKAT 202 (221)
Q Consensus 199 ~~~~ 202 (221)
.++.
T Consensus 288 ~l~~ 291 (519)
T KOG0159|consen 288 ELEK 291 (519)
T ss_pred HHHh
Confidence 7765
No 29
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.63 E-value=2.2e-14 Score=123.39 Aligned_cols=202 Identities=16% Similarity=0.181 Sum_probs=128.2
Q ss_pred CcccccccccCCCCccHHHHHHHhhcC-CceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCC-chhhhhhcCCCce
Q 048376 4 LPLIGNLHQLAGSLPHHRLRDLTNKYG-PLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHF-PPAQIISYNYRDI 81 (221)
Q Consensus 4 ~PiiGnl~~l~~~~~~~~~~~~~~~YG-~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~-~~~~~~~~~~~~~ 81 (221)
.++.|+.... ....+....+|.++|+ .++.++.++. |+++||+++++++.++..+|...+.. .....+. +.|+
T Consensus 49 ~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--iv~~dpe~i~~vl~~~~~~~~k~~~~~~~~~~~~--g~gi 123 (502)
T PLN02426 49 AYLTASWAKD-FDNLCDWYAHLLRRSPTGTIHVHVLGN--TITANPENVEYMLKTRFDNYPKGKPFSAILGDLL--GRGI 123 (502)
T ss_pred CCccHHHHHh-cccHHHHHHHHHHhCCCcEEEEecCCc--EEecCHHHHHHHHhhChhcCCCcHhHHHHHHHhc--CCce
Confidence 4677777664 2344666777889988 5777776554 89999999999999887788754322 1122222 4576
Q ss_pred eeCCCChHHHHHHHHHHHhhcCHHHHHHhH--HHHHH------------------------HHHHHHHHHHHHHHHhCCC
Q 048376 82 VFSPYGDSWKQLRKICVSELLSAKRVQSFQ--SIREK------------------------SKIYSLMYGITSRAAFGNR 135 (221)
Q Consensus 82 ~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~--~i~~~------------------------~~~~~~~~~vi~~~~fG~~ 135 (221)
+.+ +|+.||++||++ .+.|+.+.++.+. .+.++ +.+.+++++||++++||.+
T Consensus 124 ~~~-~g~~wk~~Rk~l-~~~fs~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~ 201 (502)
T PLN02426 124 FNV-DGDSWRFQRKMA-SLELGSVSIRSYAFEIVASEIESRLLPLLSSAADDGEGAVLDLQDVFRRFSFDNICKFSFGLD 201 (502)
T ss_pred eec-CcHHHHHHHHHh-HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEcHHHHHHHHHHHHHHHHHhCCC
Confidence 655 699999999997 4666655554431 11111 5688999999999999998
Q ss_pred CCCh------hHHHHHHHHHHHHcCCCccccccccccch-hhh-hchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 048376 136 SRDQ------EAFASVRGEITKLMSGFNIADMFPSVGLL-QWL-TGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICK 207 (221)
Q Consensus 136 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~P~l~~l-~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 207 (221)
++.. +++...++.+...... .....+|++..+ .++ .+..++..+..+.+.++..++|+++++... +
T Consensus 202 ~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~r~~~~~----~- 275 (502)
T PLN02426 202 PGCLELSLPISEFADAFDTASKLSAE-RAMAASPLLWKIKRLLNIGSERKLKEAIKLVDELAAEVIRQRRKLGF----S- 275 (502)
T ss_pred CcccCCCCCccHHHHHHHHHHHHHHH-HHhcchhHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHhccc----C-
Confidence 7521 2455544443332111 111222433222 111 233466777888899999999998876421 1
Q ss_pred CCCCCcHHHHhhc
Q 048376 208 IGDDEDLVDVLLK 220 (221)
Q Consensus 208 ~~~~~d~ld~ll~ 220 (221)
...|+++.+++
T Consensus 276 --~~~dll~~ll~ 286 (502)
T PLN02426 276 --ASKDLLSRFMA 286 (502)
T ss_pred --CcchHHHHHHh
Confidence 35799998874
No 30
>PLN02648 allene oxide synthase
Probab=99.39 E-value=5.4e-13 Score=113.82 Aligned_cols=130 Identities=15% Similarity=0.214 Sum_probs=92.5
Q ss_pred CCcccccccccC----CCCccHHHHHHHhhcCC-ceEEEcCCcCE-------EEeccHHHHHHHHHh----CCCccCCC-
Q 048376 3 KLPLIGNLHQLA----GSLPHHRLRDLTNKYGP-LMLLQLGQVPA-------IIVSSPQVAKEVMKT----HDVVFASR- 65 (221)
Q Consensus 3 ~~PiiGnl~~l~----~~~~~~~~~~~~~~YG~-i~~l~~g~~~~-------vvv~~~~~ike~l~~----~~~~f~~R- 65 (221)
|||+||.+.++. ..++...+.+..++||+ ||+.++++.|+ ||++|+++++.+|.. +...|...
T Consensus 24 g~P~iG~~~~~~~~~~~~~~~~F~~~~~~kyG~~vfk~~l~g~p~~~~~~~~v~~~~~e~~~~v~~~~~~~~~~~~~~~~ 103 (480)
T PLN02648 24 GLPFLGAIKDRLDYFYFQGEDEFFRSRVEKYKSTVFRVNMPPGPFIAPDPRVIALLDQKSFPVLFDVSKVDKRDVFTGTY 103 (480)
T ss_pred CCcCcchhhhhhhHHHhcChHHHHHHHHHHhCCceEEecCCCCCCCCCCCCEEEEEcCCceeeeecchhccccccceeee
Confidence 599999998652 23456788899999999 99999988766 999999999999974 44334442
Q ss_pred CCCchhhhhhcCCCc--eeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH----------------------HHHHH
Q 048376 66 PHFPPAQIISYNYRD--IVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK----------------------SKIYS 121 (221)
Q Consensus 66 p~~~~~~~~~~~~~~--~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~----------------------~~~~~ 121 (221)
|. ....+ ++.. .++..+|+.|+++||++. +.|+. .++.+.+.+.+ +.+.+
T Consensus 104 ~~--~~~l~--G~~~~~s~~~~~g~~H~r~Rrll~-~~f~~-~~~~~~~~m~~~~~~~~~~w~~~~~~~~~vdv~~~~~~ 177 (480)
T PLN02648 104 MP--STAFT--GGYRVLSYLDPSEPKHAKLKSFLF-ELLKS-RHRRFIPEFRAAFAELFDTWEAELAKKGKAEFNDPLDQ 177 (480)
T ss_pred cc--Ccccc--CCceeeeecCCCCchHHHHHHHHH-HHHHH-hhhhhhhHHHHHHHHHHHHHHHHHhhCCCccccchHHH
Confidence 32 23333 2221 344557999999999975 55653 33444332222 47888
Q ss_pred HHHHHHHHHHhCCCCCC
Q 048376 122 LMYGITSRAAFGNRSRD 138 (221)
Q Consensus 122 ~~~~vi~~~~fG~~~~~ 138 (221)
++++||++++||.+.+.
T Consensus 178 lt~~vi~~~lfG~~~~~ 194 (480)
T PLN02648 178 MAFNFLCKALTGKDPSE 194 (480)
T ss_pred HHHHHHHHHHcCCCcch
Confidence 99999999999987655
No 31
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.32 E-value=2.8e-11 Score=99.21 Aligned_cols=200 Identities=16% Similarity=0.227 Sum_probs=125.9
Q ss_pred CcccccccccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCC-chhhhhhcCCCcee
Q 048376 4 LPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHF-PPAQIISYNYRDIV 82 (221)
Q Consensus 4 ~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~-~~~~~~~~~~~~~~ 82 (221)
.|++|++.++ +++|...+.+..+|||+||++.+|++.+-++.||+...-++...-..++=+-.. ...... . |.|++
T Consensus 40 iP~lG~a~~f-gk~P~eFl~~~~~K~GdVFTv~l~Gk~~Tfll~p~~~~~v~~~~~~~ld~~~~~~~l~~~v-F-g~~v~ 116 (486)
T KOG0684|consen 40 IPWLGSALAF-GKDPLEFLRECRKKYGDVFTVLLMGKYMTFLLGPEGYDFVFKAKLADLDFEEAYSKLTTPV-F-GKGVV 116 (486)
T ss_pred cchhhHHHHh-ccCHHHHHHHHHHhcCCeEEEEEcCcEEEEEeCchhhHHHHcCcccccCHHHHHHHhhhhh-c-CCCcc
Confidence 7999999999 899999999999999999999999999999999999998886542222211100 011111 1 45666
Q ss_pred eCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH----------------HHHHHHHHHHHH----HHHhCCCCCC-hhH
Q 048376 83 FSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK----------------SKIYSLMYGITS----RAAFGNRSRD-QEA 141 (221)
Q Consensus 83 ~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~----------------~~~~~~~~~vi~----~~~fG~~~~~-~~~ 141 (221)
....+..-.++.+++. ..++...++++..++.+ +.+..++-.+|. .+.||+.-+. ++.
T Consensus 117 ~d~~~~~~~e~~~~~k-~~L~~~~lk~~~e~m~~el~~~f~~~~~~s~~~d~l~~~~~~ii~tAs~~ll~~e~r~~~d~~ 195 (486)
T KOG0684|consen 117 YDVPNHVMMEQKKFFK-SALGGVALKSLVELMLEELHAYFETSLGESGETDGLYTFCRLIIFTASRLLLGGEVRDQLDAD 195 (486)
T ss_pred ccCCCchHHHHHHHHH-HHhchhhHHHHHHHHHHHHHHHHhcccccccchhHhhhhhHHHhhhhHHHhhhhhhhhhhcch
Confidence 6556788889988864 55665666666554442 222233333332 3334443332 223
Q ss_pred HHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 142 FASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
......++...+..+ -..||. +++. +..++..++++++.+.+.+.|.++++..+. ...|+++.+++
T Consensus 196 ~a~l~~dLd~~F~~~--d~~FP~--~LP~--~~~r~~~ra~~~i~k~f~~~i~~rr~s~s~-------~~~dmlq~l~~ 261 (486)
T KOG0684|consen 196 VAKLYHDLDQGFQPF--DFLFPY--NLPI--PLLRRRDRARKKISKIFSKIILDRRASISK-------WDNDMLQSLME 261 (486)
T ss_pred HHHHHHHHhccccch--Hhhccc--CCCc--chhhhHHHHHHHHHHHHHHHHHHHHhcccc-------ccHHHHHHHHH
Confidence 333333433333222 235674 3322 233455588889999999999999987643 24678777654
No 32
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.89 E-value=9.3e-08 Score=80.52 Aligned_cols=174 Identities=17% Similarity=0.248 Sum_probs=113.8
Q ss_pred cHHHHHHHhhcCCceEEEcCCcC--EEEeccHHHHHHHHHhCCCccCCCCCCch----hhhhhcCCCceeeCCCChHHHH
Q 048376 19 HHRLRDLTNKYGPLMLLQLGQVP--AIIVSSPQVAKEVMKTHDVVFASRPHFPP----AQIISYNYRDIVFSPYGDSWKQ 92 (221)
Q Consensus 19 ~~~~~~~~~~YG~i~~l~~g~~~--~vvv~~~~~ike~l~~~~~~f~~Rp~~~~----~~~~~~~~~~~~~~~~g~~Wk~ 92 (221)
......+.+.||.++.++..+.- ++++++++++++++.++. .++.+..... ..... +.+.++..+|+.|++
T Consensus 25 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~~v~~v~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~ll~~dg~~H~r 101 (411)
T COG2124 25 RFFLERAEDPYGDYFTLRLPGPGDGFWVVSRPADVREVLRDPR-FFSSALGAGLRPRLLRPVL--GDGSLLTLDGPEHTR 101 (411)
T ss_pred hhhHHHHhCCCchhhhhhccCccceEEEEcCHHHHHHHHcCcc-cccccccccccccchhhhc--cccceeecCCHHHHH
Confidence 34556788999999999875544 899999999999998764 2333321111 11221 233244457999999
Q ss_pred HHHHHHHhhcCHHHHHHhHHHHHH------------------HHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHcC
Q 048376 93 LRKICVSELLSAKRVQSFQSIREK------------------SKIYSLMYGITSRAAFGNRSRDQEAFASVRGEITKLMS 154 (221)
Q Consensus 93 ~Rr~~~~~~~~~~~~~~~~~i~~~------------------~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~ 154 (221)
+||++ .+.|+++.++.+.+.+++ +.+...++.||+ .+||...++...+..........
T Consensus 102 ~Rkl~-~~~F~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~v~~~a~~l~~~vi~-~l~Gv~~~~~~~~~~~~~~~~~~-- 177 (411)
T COG2124 102 LRKLL-APAFTPRALRGYRPLIREIADRLLDDLWQGGADLVLDFAAELTLRVIA-ELLGVPLEDRPQLLRWSDALLLR-- 177 (411)
T ss_pred HHHHh-ccccCHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHhhhhhHHHHH-HHhCCCHHHHHHHHHHHHHHHhc--
Confidence 99996 578998888877655443 456777899999 99998877655433333222221
Q ss_pred CCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhh
Q 048376 155 GFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLL 219 (221)
Q Consensus 155 ~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll 219 (221)
..|... ......+..+....+.+++.++|++++.. ...|+++.|+
T Consensus 178 ------~~~~~~----~~~~~~~~~~a~~~~~~~~~~li~~rR~~----------~~~dlls~l~ 222 (411)
T COG2124 178 ------LDPDLG----PEEPWRRARAARRELDAYLRALIAERRAA----------PRDDLLSLLL 222 (411)
T ss_pred ------cCcccC----CcccHHHHHHHHHHHHHHHHHHHHHhccC----------CcccHHHHHH
Confidence 002211 11223566778889999999999999831 3466666665
No 33
>smart00362 RRM_2 RNA recognition motif.
Probab=79.04 E-value=10 Score=22.06 Aligned_cols=39 Identities=18% Similarity=0.387 Sum_probs=28.8
Q ss_pred cHHHHHHHhhcCCceEEEcCCcC-------EEEeccHHHHHHHHHh
Q 048376 19 HHRLRDLTNKYGPLMLLQLGQVP-------AIIVSSPQVAKEVMKT 57 (221)
Q Consensus 19 ~~~~~~~~~~YG~i~~l~~g~~~-------~vvv~~~~~ike~l~~ 57 (221)
...+.++.++||++..+.+-..+ .|-..+++.+++++..
T Consensus 13 ~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~ 58 (72)
T smart00362 13 EEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEA 58 (72)
T ss_pred HHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHH
Confidence 46778888999998777654332 5666799999888754
No 34
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=72.92 E-value=12 Score=21.41 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=29.0
Q ss_pred HHHHHhhcCCceEEEcCCcC----EEEeccHHHHHHHHH-hCCCccCCCC
Q 048376 22 LRDLTNKYGPLMLLQLGQVP----AIIVSSPQVAKEVMK-THDVVFASRP 66 (221)
Q Consensus 22 ~~~~~~~YG~i~~l~~g~~~----~vvv~~~~~ike~l~-~~~~~f~~Rp 66 (221)
+.+.-++||+|-.+.+.... .|--.+.+.++.+.. =++..|.+|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~ 50 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRP 50 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 34677899999988875433 445558888888875 2444555544
No 35
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=70.61 E-value=12 Score=22.16 Aligned_cols=56 Identities=16% Similarity=0.296 Sum_probs=37.4
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC--------cCEEEeccHHHHHHHHH-hCCCccCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ--------VPAIIVSSPQVAKEVMK-THDVVFAS 64 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~--------~~~vvv~~~~~ike~l~-~~~~~f~~ 64 (221)
+|||+..- -....+.++.++||++-.+++.. .-.|.-.+.+.++.++. -++..+.+
T Consensus 2 ~v~nlp~~---~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~ 66 (70)
T PF00076_consen 2 YVGNLPPD---VTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKING 66 (70)
T ss_dssp EEESETTT---SSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred EEcCCCCc---CCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECc
Confidence 35666553 23477889999999987777654 23566679999999987 33333333
No 36
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=68.58 E-value=14 Score=30.32 Aligned_cols=60 Identities=12% Similarity=0.076 Sum_probs=44.2
Q ss_pred cccccccccCCCCccHHHHHHHhhcCCceEEEcCCcC---------EEEeccHHHHHHHHH-hCCCccCCCCC
Q 048376 5 PLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVP---------AIIVSSPQVAKEVMK-THDVVFASRPH 67 (221)
Q Consensus 5 PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~---------~vvv~~~~~ike~l~-~~~~~f~~Rp~ 67 (221)
-++|||..- --...+.++-.+||+|.++++-..+ +|.-.+++.+..++. -++-.+.+|+.
T Consensus 272 lfV~NL~~~---~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i 341 (352)
T TIGR01661 272 IFVYNLSPD---TDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVL 341 (352)
T ss_pred EEEeCCCCC---CCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 357777653 2246788899999999999876544 777889998888875 46677777764
No 37
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=68.00 E-value=10 Score=26.34 Aligned_cols=36 Identities=17% Similarity=0.394 Sum_probs=28.8
Q ss_pred HHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHh
Q 048376 20 HRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKT 57 (221)
Q Consensus 20 ~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~ 57 (221)
..+.+|.++||.+--. .+...+...|++.++|++..
T Consensus 78 ~~i~~w~~~~g~v~l~--~~~~~l~~~d~~~l~~l~~~ 113 (129)
T PF13625_consen 78 QSIEDWARRYGRVRLY--KGAYLLECDDPELLDELLAD 113 (129)
T ss_pred HHHHHHHHhcCCEEEe--cCeEEEEECCHHHHHHHHhC
Confidence 5678999999987542 25678889999999999864
No 38
>PLN03120 nucleic acid binding protein; Provisional
Probab=67.31 E-value=20 Score=28.33 Aligned_cols=59 Identities=10% Similarity=0.211 Sum_probs=46.0
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC------CcCEEEeccHHHHHHHHHhCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG------QVPAIIVSSPQVAKEVMKTHDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g------~~~~vvv~~~~~ike~l~~~~~~f~~Rp~ 67 (221)
++|||..- -....+.++...||+|-.+.+. +.-+|...+++.++.++.-++..+.+|+.
T Consensus 8 fVgNLs~~---tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V 72 (260)
T PLN03120 8 KVSNVSLK---ATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQSV 72 (260)
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCceE
Confidence 46666543 2246788899999999999883 45678888999999999988889999874
No 39
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=63.07 E-value=22 Score=25.37 Aligned_cols=58 Identities=16% Similarity=0.167 Sum_probs=40.5
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC---------CcCEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG---------QVPAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g---------~~~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
+||||..- -....+.++-++||+|..+.+- +.-+|-..+++.|+.++.. ++..+.+|+
T Consensus 38 fVgnL~~~---~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~ 105 (144)
T PLN03134 38 FIGGLSWG---TDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRH 105 (144)
T ss_pred EEeCCCCC---CCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 45666543 2246788899999999887763 2346677799999999964 455566664
No 40
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=58.14 E-value=41 Score=22.69 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=31.9
Q ss_pred cHHHHHHHhhcCCceEEEcCCcC------EEEeccHHHHHHHHHh
Q 048376 19 HHRLRDLTNKYGPLMLLQLGQVP------AIIVSSPQVAKEVMKT 57 (221)
Q Consensus 19 ~~~~~~~~~~YG~i~~l~~g~~~------~vvv~~~~~ike~l~~ 57 (221)
....-++.-+||+|-++++|..+ +||-.|-..+|.+..+
T Consensus 32 seemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dh 76 (124)
T KOG0114|consen 32 SEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDH 76 (124)
T ss_pred HHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHH
Confidence 35666788899999999999654 6888899999999864
No 41
>smart00360 RRM RNA recognition motif.
Probab=55.88 E-value=37 Score=19.37 Aligned_cols=39 Identities=21% Similarity=0.340 Sum_probs=28.6
Q ss_pred cHHHHHHHhhcCCceEEEcCCc---------CEEEeccHHHHHHHHHh
Q 048376 19 HHRLRDLTNKYGPLMLLQLGQV---------PAIIVSSPQVAKEVMKT 57 (221)
Q Consensus 19 ~~~~~~~~~~YG~i~~l~~g~~---------~~vvv~~~~~ike~l~~ 57 (221)
...+.++.++||+|..+++-.. -.|...+++.++.++..
T Consensus 10 ~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~ 57 (71)
T smart00360 10 EEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEA 57 (71)
T ss_pred HHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHH
Confidence 4667888899999887776433 24666788888888753
No 42
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=54.94 E-value=48 Score=23.05 Aligned_cols=44 Identities=16% Similarity=0.414 Sum_probs=28.7
Q ss_pred HHHHhhcC------CceEEEcC-CcCEEEe--c---cHHHHHHHHHhCCCccCCCC
Q 048376 23 RDLTNKYG------PLMLLQLG-QVPAIIV--S---SPQVAKEVMKTHDVVFASRP 66 (221)
Q Consensus 23 ~~~~~~YG------~i~~l~~g-~~~~vvv--~---~~~~ike~l~~~~~~f~~Rp 66 (221)
.+++++|| |++.|..| ..+-|-- . ..+.++..+..++..|-++|
T Consensus 71 ~~Laery~i~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~~yiglp 126 (126)
T PF07912_consen 71 MELAERYKIDKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTGLYIGLP 126 (126)
T ss_dssp HHHHHHTT-SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS--TTST
T ss_pred HHHHHHhCCCcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCCeeecCC
Confidence 67888997 78888774 3444433 2 35677888888878888776
No 43
>PF07659 DUF1599: Domain of Unknown Function (DUF1599); InterPro: IPR011630 This entry is represented by Clostridium phage phiCTP1, Gp74. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=51.42 E-value=17 Score=21.77 Aligned_cols=14 Identities=36% Similarity=0.904 Sum_probs=10.8
Q ss_pred CCCChHHHHHHHHH
Q 048376 84 SPYGDSWKQLRKIC 97 (221)
Q Consensus 84 ~~~g~~Wk~~Rr~~ 97 (221)
.+||+.|+.+|=..
T Consensus 3 ~DYG~awr~~r~~S 16 (61)
T PF07659_consen 3 HDYGDAWRIMRISS 16 (61)
T ss_pred ccHHHHHHHHCchH
Confidence 36899999988553
No 44
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=50.83 E-value=47 Score=19.13 Aligned_cols=40 Identities=15% Similarity=0.270 Sum_probs=30.2
Q ss_pred cHHHHHHHhhcCCceEEEcCCcC--------EEEeccHHHHHHHHHhC
Q 048376 19 HHRLRDLTNKYGPLMLLQLGQVP--------AIIVSSPQVAKEVMKTH 58 (221)
Q Consensus 19 ~~~~~~~~~~YG~i~~l~~g~~~--------~vvv~~~~~ike~l~~~ 58 (221)
...+.++.+.||++..+++-..+ .|-..+++.++.++.+.
T Consensus 13 ~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~ 60 (74)
T cd00590 13 EEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEAL 60 (74)
T ss_pred HHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 46788888999998887765433 55567999999988643
No 45
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=44.49 E-value=50 Score=19.53 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=30.5
Q ss_pred cHHHHHHHhhcCCceEEEcCCc--------CEEEeccHHHHHHHHHhC
Q 048376 19 HHRLRDLTNKYGPLMLLQLGQV--------PAIIVSSPQVAKEVMKTH 58 (221)
Q Consensus 19 ~~~~~~~~~~YG~i~~l~~g~~--------~~vvv~~~~~ike~l~~~ 58 (221)
...+.++-..||+|-.+.+... =+|-..+++.+++++...
T Consensus 12 ~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~ 59 (70)
T PF14259_consen 12 EEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELL 59 (70)
T ss_dssp HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHC
Confidence 4678888899998877776433 356677999999999754
No 46
>PF13072 DUF3936: Protein of unknown function (DUF3936)
Probab=39.09 E-value=12 Score=19.96 Aligned_cols=25 Identities=16% Similarity=0.529 Sum_probs=16.6
Q ss_pred CCcccccccccCCCCccHHHHHHHhhcCCc
Q 048376 3 KLPLIGNLHQLAGSLPHHRLRDLTNKYGPL 32 (221)
Q Consensus 3 ~~PiiGnl~~l~~~~~~~~~~~~~~~YG~i 32 (221)
++-+.|-..++ ...+.+|.++|+.+
T Consensus 9 ~i~lvGKAWeI-----r~~Lkey~k~~~~v 33 (38)
T PF13072_consen 9 GIILVGKAWEI-----RAKLKEYGKQFGYV 33 (38)
T ss_pred eEEEEehHHHH-----HHHHHHHHHhhhhH
Confidence 44455555555 25788899998865
No 47
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=37.44 E-value=31 Score=26.77 Aligned_cols=58 Identities=16% Similarity=0.284 Sum_probs=38.0
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEc------C---CcCEEEeccHHHHHHHHHhCCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQL------G---QVPAIIVSSPQVAKEVMKTHDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~------g---~~~~vvv~~~~~ike~l~~~~~~f~~Rp 66 (221)
|+|.|-+-. .-..+.+..++||.|.---+ | +.-+|-..|++.+..++.+..-...+|-
T Consensus 16 fVggL~w~T---~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~ 82 (247)
T KOG0149|consen 16 FVGGLAWET---HKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRK 82 (247)
T ss_pred EEcCccccc---chHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccc
Confidence 577776652 23688899999998753211 1 2235666789999999976655555553
No 48
>PRK02302 hypothetical protein; Provisional
Probab=35.80 E-value=80 Score=20.55 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=26.4
Q ss_pred HHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHh
Q 048376 21 RLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKT 57 (221)
Q Consensus 21 ~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~ 57 (221)
.-.+--++||+|...-==...+|+=.|-+.+.++..+
T Consensus 18 k~~r~LrkfG~I~Y~Skk~kYvvlYvn~~~~e~~~~k 54 (89)
T PRK02302 18 RDARKLSKYGDIVYHSKRSRYLVLYVNKEDVEQKLEE 54 (89)
T ss_pred HhHHHHhhcCcEEEEeccccEEEEEECHHHHHHHHHH
Confidence 3445567899998776555667777788888888754
No 49
>PF09061 Stirrup: Stirrup; InterPro: IPR015146 The Stirrup domain, found in the prokaryotic protein ribonucleotide reductase, has a molecular mass of 9 kDa and is folded into an alpha/beta structure. It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges distributed on its surface []. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1DQ3_A.
Probab=34.34 E-value=78 Score=19.12 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=17.2
Q ss_pred cHHHHHHHhhcCCceEEEcCCcCEEEec
Q 048376 19 HHRLRDLTNKYGPLMLLQLGQVPAIIVS 46 (221)
Q Consensus 19 ~~~~~~~~~~YG~i~~l~~g~~~~vvv~ 46 (221)
...|.+|+.+||-=|.. -|++..-+|.
T Consensus 9 f~afk~was~ygvefkt-ngsqtlaii~ 35 (79)
T PF09061_consen 9 FNAFKEWASKYGVEFKT-NGSQTLAIIK 35 (79)
T ss_dssp HHHHHHHHHTTT-EEEE-ETTEEEEEET
T ss_pred HHHHHHHHHHhCeEEec-CCceEEEeec
Confidence 47889999999955443 2555544444
No 50
>PRK02886 hypothetical protein; Provisional
Probab=32.80 E-value=97 Score=20.09 Aligned_cols=37 Identities=11% Similarity=0.212 Sum_probs=26.2
Q ss_pred HHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHh
Q 048376 21 RLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKT 57 (221)
Q Consensus 21 ~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~ 57 (221)
.-.+--++||+|...-==..-+|+=.|-+.+.+++.+
T Consensus 16 k~~r~LrkyG~I~Y~Skr~kYvvlYvn~~~~e~~~~k 52 (87)
T PRK02886 16 KQAKQLRKFGNVHYVSKRLKYAVLYCDMEQVEDIMNK 52 (87)
T ss_pred HhHHHHhhcCcEEEEeccccEEEEEECHHHHHHHHHH
Confidence 3445567899998776555667777788888888754
No 51
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=32.76 E-value=67 Score=23.91 Aligned_cols=46 Identities=28% Similarity=0.471 Sum_probs=31.4
Q ss_pred cccccccCCCCccHHHHHHHhhcCCceEEEcCCcC----EEEeccHHHHHHHH
Q 048376 7 IGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVP----AIIVSSPQVAKEVM 55 (221)
Q Consensus 7 iGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~----~vvv~~~~~ike~l 55 (221)
+|||-.-..+ .-|....-+||++.++|+...| +|-..||.+|.++.
T Consensus 15 VGnL~~~a~k---~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAv 64 (195)
T KOG0107|consen 15 VGNLGSRATK---RELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAV 64 (195)
T ss_pred eccCCCCcch---HHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHH
Confidence 6776553122 4567778899999999986544 66666777666665
No 52
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=32.75 E-value=1.1e+02 Score=27.05 Aligned_cols=59 Identities=19% Similarity=0.368 Sum_probs=40.7
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC--------CcCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG--------QVPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g--------~~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
+|||+..- -....+.++.++||.|..+++- +.-+|...+++.+.+++.. ++..+.+||.
T Consensus 289 ~V~nl~~~---~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l 356 (562)
T TIGR01628 289 YVKNLDDT---VTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPL 356 (562)
T ss_pred EEeCCCCc---cCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCcee
Confidence 45555442 2246788899999999888763 2347888899999999863 4455566653
No 53
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=30.98 E-value=1.3e+02 Score=24.93 Aligned_cols=49 Identities=16% Similarity=0.302 Sum_probs=35.2
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCCc---------CEEEeccHHHHHHHHHh
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQV---------PAIIVSSPQVAKEVMKT 57 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~---------~~vvv~~~~~ike~l~~ 57 (221)
+||||..- -....+.++.++||.|..+.+-.. -+|-..+.+.|++++..
T Consensus 197 fV~nLp~~---vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 254 (346)
T TIGR01659 197 YVTNLPRT---ITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISA 254 (346)
T ss_pred EEeCCCCc---ccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 56666443 224678889999999987766432 27778899999998864
No 54
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=28.98 E-value=1.9e+02 Score=21.83 Aligned_cols=59 Identities=24% Similarity=0.430 Sum_probs=40.8
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCCc---------CEEEeccHHHHHHHHHhCC-CccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQV---------PAIIVSSPQVAKEVMKTHD-VVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~---------~~vvv~~~~~ike~l~~~~-~~f~~Rp~ 67 (221)
++|||.. .-....+.+..++||++.++.+... -.|...+++.++.++.... -.|.+|+.
T Consensus 119 ~v~nL~~---~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~ 187 (306)
T COG0724 119 FVGNLPY---DVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPL 187 (306)
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCcee
Confidence 4666653 2234678899999999976665433 3678888888888886543 67777764
No 55
>PRK09812 toxin ChpB; Provisional
Probab=28.13 E-value=56 Score=22.31 Aligned_cols=21 Identities=29% Similarity=0.645 Sum_probs=15.6
Q ss_pred CCceEEEc---------CC-cCEEEeccHHH
Q 048376 30 GPLMLLQL---------GQ-VPAIIVSSPQV 50 (221)
Q Consensus 30 G~i~~l~~---------g~-~~~vvv~~~~~ 50 (221)
|+|+.+.+ |. +|+|||++...
T Consensus 10 GdI~~v~l~P~~G~E~~gk~RP~vVvS~d~~ 40 (116)
T PRK09812 10 GDIVLVGFDPASGHEQQGAGRPALVLSVAAF 40 (116)
T ss_pred CcEEEEECCCCCccccCCCcCeEEEEccchh
Confidence 67777766 64 89999997644
No 56
>COG4471 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.99 E-value=1.8e+02 Score=18.94 Aligned_cols=39 Identities=8% Similarity=0.131 Sum_probs=30.3
Q ss_pred cHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHh
Q 048376 19 HHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKT 57 (221)
Q Consensus 19 ~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~ 57 (221)
+...++--++||+|...-=-.+-+|.=++-+.+..++.|
T Consensus 15 ~~K~aRqLrkfG~v~Y~Skk~kY~vlYvn~~~ve~~~~k 53 (90)
T COG4471 15 SLKDARQLRKFGDVHYVSKKSKYVVLYVNEQDVEQIVEK 53 (90)
T ss_pred hhhhhHHHHhcCCEEEEecceeEEEEEECHHHHHHHHHH
Confidence 345566778999998777667778888888888888865
No 57
>COG1965 CyaY Protein implicated in iron transport, frataxin homolog [Inorganic ion transport and metabolism]
Probab=27.88 E-value=68 Score=21.60 Aligned_cols=28 Identities=14% Similarity=0.316 Sum_probs=26.2
Q ss_pred CCceEEEcCCcCEEEeccHHHHHHHHHh
Q 048376 30 GPLMLLQLGQVPAIIVSSPQVAKEVMKT 57 (221)
Q Consensus 30 G~i~~l~~g~~~~vvv~~~~~ike~l~~ 57 (221)
|.|+++.++....+|||.-+-.+|+...
T Consensus 36 g~VlTl~f~ngs~iiINkQ~P~~qiWlA 63 (106)
T COG1965 36 GGVLTLTFDNGSQIIINKQEPLQQIWLA 63 (106)
T ss_pred CCEEEEEECCCcEEEEeCCChHHHHHhh
Confidence 8899999999999999999999999963
No 58
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=27.69 E-value=1.6e+02 Score=19.59 Aligned_cols=45 Identities=11% Similarity=0.214 Sum_probs=31.4
Q ss_pred HHHHHHHhhcCCceEEE--------------cCCcCE--EEeccHHHHHHHHHhCCCccCC
Q 048376 20 HRLRDLTNKYGPLMLLQ--------------LGQVPA--IIVSSPQVAKEVMKTHDVVFAS 64 (221)
Q Consensus 20 ~~~~~~~~~YG~i~~l~--------------~g~~~~--vvv~~~~~ike~l~~~~~~f~~ 64 (221)
....+..++||.|..-. ..+... |--.++..|+.+|.+++..+.+
T Consensus 20 ~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g 80 (100)
T PF05172_consen 20 NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSG 80 (100)
T ss_dssp HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETT
T ss_pred HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcC
Confidence 45667778899987664 223334 4445999999999999887765
No 59
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=26.92 E-value=2e+02 Score=24.97 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=37.8
Q ss_pred cHHHHHHHhhcCCceEEEcC----CcCEEEeccHHHHHHHHH-hCCCccCCCCC
Q 048376 19 HHRLRDLTNKYGPLMLLQLG----QVPAIIVSSPQVAKEVMK-THDVVFASRPH 67 (221)
Q Consensus 19 ~~~~~~~~~~YG~i~~l~~g----~~~~vvv~~~~~ike~l~-~~~~~f~~Rp~ 67 (221)
...+.++-.+||+|.++++- +.-+|-..+++.|.+++. -++..+.+|+.
T Consensus 290 ~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l 343 (481)
T TIGR01649 290 CDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPL 343 (481)
T ss_pred HHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceE
Confidence 46788999999999999873 345677779999999996 35666777764
No 60
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=26.66 E-value=1.6e+02 Score=23.30 Aligned_cols=35 Identities=14% Similarity=0.017 Sum_probs=24.3
Q ss_pred HHHHHHhh-cCCceEEEcCCcCEEEec---cHHHHHHHHH
Q 048376 21 RLRDLTNK-YGPLMLLQLGQVPAIIVS---SPQVAKEVMK 56 (221)
Q Consensus 21 ~~~~~~~~-YG~i~~l~~g~~~~vvv~---~~~~ike~l~ 56 (221)
.+.+..++ ||.+ ++++|+-.++++| +.+.+.+++.
T Consensus 168 ~l~~~~~~~~g~l-~ff~GGDN~~~~~~~l~~~~~~~~i~ 206 (254)
T PRK02240 168 ALMRELRKAHDAL-SFFVGGDNFMAPCPGLSEGDFLDAIE 206 (254)
T ss_pred HHHHHHHHhcCcE-EEEecCceEEEECCCCCHHHHHHHHH
Confidence 34444455 8876 7899999999994 5556666664
No 61
>KOG4241 consensus Mitochondrial ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=26.26 E-value=52 Score=25.07 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=30.2
Q ss_pred HHHHHHHh--hcCCceEEEcCCcCEEEeccHHHHHHHHH
Q 048376 20 HRLRDLTN--KYGPLMLLQLGQVPAIIVSSPQVAKEVMK 56 (221)
Q Consensus 20 ~~~~~~~~--~YG~i~~l~~g~~~~vvv~~~~~ike~l~ 56 (221)
..+.+..+ +|.++..+..|+.-++.+.|++.+++++.
T Consensus 125 kIlk~~~~~t~y~~l~plfvgnh~ill~~d~~kik~~lr 163 (245)
T KOG4241|consen 125 KILKKIFDKTPYSSLNPLFVGNHAILLAKDISKIKSILR 163 (245)
T ss_pred HHHHHHHhcCchhhhhhheeccceEEEcCChHHHHHHHH
Confidence 34444444 47889999999999999999999999995
No 62
>PF09804 DUF2347: Uncharacterized conserved protein (DUF2347); InterPro: IPR018626 Members of this family of hypothetical proteins have no known function.
Probab=26.05 E-value=28 Score=27.93 Aligned_cols=33 Identities=30% Similarity=0.502 Sum_probs=26.9
Q ss_pred CccHHHHHHHhhcCC-ceEEE---cCCcCEEEeccHH
Q 048376 17 LPHHRLRDLTNKYGP-LMLLQ---LGQVPAIIVSSPQ 49 (221)
Q Consensus 17 ~~~~~~~~~~~~YG~-i~~l~---~g~~~~vvv~~~~ 49 (221)
+|...+-+|-+.+|| ||.+| +.++++++++.+.
T Consensus 159 Hp~~~Lp~~l~~fGPlIF~L~K~aLLRKRILi~~~~p 195 (280)
T PF09804_consen 159 HPAGSLPQLLDTFGPLIFPLWKAALLRKRILIFSPPP 195 (280)
T ss_pred CHHHHHHHHHHHhCcHHHHHHHHHhhcCcEEEecCCC
Confidence 455788999999998 77776 7899999998663
No 63
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=25.55 E-value=50 Score=19.78 Aligned_cols=11 Identities=18% Similarity=0.664 Sum_probs=9.5
Q ss_pred HHHHHHHhhcC
Q 048376 20 HRLRDLTNKYG 30 (221)
Q Consensus 20 ~~~~~~~~~YG 30 (221)
..+.+|+++||
T Consensus 52 ~~ye~w~~~FG 62 (62)
T PF09336_consen 52 KKYEEWTKEFG 62 (62)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHHcC
Confidence 57889999998
No 64
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=24.71 E-value=87 Score=23.07 Aligned_cols=37 Identities=27% Similarity=0.583 Sum_probs=27.9
Q ss_pred CCccHHHHHHHhhcC-CceEEEc-CCcCE---EEeccHHHHH
Q 048376 16 SLPHHRLRDLTNKYG-PLMLLQL-GQVPA---IIVSSPQVAK 52 (221)
Q Consensus 16 ~~~~~~~~~~~~~YG-~i~~l~~-g~~~~---vvv~~~~~ik 52 (221)
.+......++.+++| |+.++.+ |+.|- +||+||-.+-
T Consensus 154 GkIteaVk~lr~~hgI~VISL~M~GSVpdVADlVvtDPvqAG 195 (218)
T COG1707 154 GKITEAVKELREEHGIPVISLNMFGSVPDVADLVVTDPVQAG 195 (218)
T ss_pred chHHHHHHHHHHhcCCeEEEeccCCCCcchhheeecCchHhh
Confidence 344567788999999 8999986 67664 5888886653
No 65
>PF05165 GGDN: GGDN family; InterPro: IPR007839 GTP cyclohydrolase III catalyses the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. The enzyme also has an independent pyrophosphate phosphohydrolase activity. The proteins are 200-270 amino acids in length.; GO: 0003933 GTP cyclohydrolase activity, 0009058 biosynthetic process; PDB: 2QV6_B.
Probab=24.71 E-value=1.2e+02 Score=23.85 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=17.6
Q ss_pred HHHHHHHhhcCCceEEEcCCcCEEEecc
Q 048376 20 HRLRDLTNKYGPLMLLQLGQVPAIIVSS 47 (221)
Q Consensus 20 ~~~~~~~~~YG~i~~l~~g~~~~vvv~~ 47 (221)
..+.+..++||.+ .+++|+-.+++++.
T Consensus 160 ~~l~~~~~~~G~L-~fylGGDNi~~v~p 186 (246)
T PF05165_consen 160 AKLMKYLEKYGSL-AFYLGGDNIMAVCP 186 (246)
T ss_dssp HHHHHHHHTTT----EEEETTEEEEE-T
T ss_pred HHHHHHHHhcCCE-EEEecCceEEEECC
Confidence 3455566789987 56999999999884
No 66
>PRK09907 toxin MazF; Provisional
Probab=24.42 E-value=82 Score=21.30 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=16.0
Q ss_pred cCCceEEEc---------CCcCEEEeccHHH
Q 048376 29 YGPLMLLQL---------GQVPAIIVSSPQV 50 (221)
Q Consensus 29 YG~i~~l~~---------g~~~~vvv~~~~~ 50 (221)
-|+|+.+.+ |.+|+|||++...
T Consensus 9 rGdI~~vdl~P~~G~E~~g~RP~lVvs~d~~ 39 (111)
T PRK09907 9 MGDLIWVDFDPTKGSEQAGHRPAVVLSPFMY 39 (111)
T ss_pred CCcEEEEECCCCCCcccCCCCeEEEEcchHh
Confidence 377777765 6789999996543
No 67
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=24.18 E-value=1.6e+02 Score=25.53 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=34.6
Q ss_pred HHHHHHhhcCCceEEEcCC------------cCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 21 RLRDLTNKYGPLMLLQLGQ------------VPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 21 ~~~~~~~~YG~i~~l~~g~------------~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
.+.+...+||+|..+++-. .-+|.-.+.+.|+.++.. ++..|.+|..
T Consensus 435 dl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v 494 (509)
T TIGR01642 435 DVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVV 494 (509)
T ss_pred HHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 4667789999999988732 226777799999888863 5566777764
No 68
>PRK04023 DNA polymerase II large subunit; Validated
Probab=23.48 E-value=1.3e+02 Score=28.85 Aligned_cols=63 Identities=17% Similarity=0.222 Sum_probs=39.3
Q ss_pred cCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCC-CCchhhhhhcCCCceeeCCCChHHHHHH
Q 048376 29 YGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRP-HFPPAQIISYNYRDIVFSPYGDSWKQLR 94 (221)
Q Consensus 29 YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp-~~~~~~~~~~~~~~~~~~~~g~~Wk~~R 94 (221)
=||+++|+-|. ++=|+|++.+.++-..=.+.. +=. .+..+..+..++.-++-++|-+.|..+=
T Consensus 369 egPtVrL~nGd--V~ridd~~~A~~~~~~VeeIl-dlGeiLi~yGdFlENNhpL~Ps~y~~EWW~qe 432 (1121)
T PRK04023 369 EGPTVRLKNGD--VVRIDDVEEAKEIRDDVEEIL-DLGEILINYGDFLENNHPLLPSSYCEEWWIQE 432 (1121)
T ss_pred cCCeEEecCCC--EEEeCCHHHHHHHhhchhhhh-hhhhhhcccchhhhcCCcCCCccccHHHHHHH
Confidence 48888888776 788999999998874221111 111 1222344444455667778889997543
No 69
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=22.34 E-value=1.4e+02 Score=28.52 Aligned_cols=63 Identities=16% Similarity=0.175 Sum_probs=38.5
Q ss_pred cCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCC-CCchhhhhhcCCCceeeCCCChHHHHHH
Q 048376 29 YGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRP-HFPPAQIISYNYRDIVFSPYGDSWKQLR 94 (221)
Q Consensus 29 YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp-~~~~~~~~~~~~~~~~~~~~g~~Wk~~R 94 (221)
=||+++|+-|. ++=|+|++.+.++-..=.+.. +=. .+..+..+..++.-++-++|-+.|..+=
T Consensus 367 egPtVkL~nGd--V~rIdd~~~A~~~~~~VeeIl-dlGeiLv~yGdFlENNhpL~Ps~y~~EWW~qe 430 (1095)
T TIGR00354 367 EGPTVKLKNGD--VIRINTLEEAKAVRGEVEEIL-FLGDILVNYGDFLENNHPLIPASWCEEWWIQE 430 (1095)
T ss_pred cCCeeEecCCC--EEEeCCHHHHHHHHhchhhhh-hhhhhhhcchhhhhcCCcCCCccchHHHHHHH
Confidence 38888887776 788999999999863221111 111 1122344444455666677889996554
No 70
>PLN03121 nucleic acid binding protein; Provisional
Probab=22.29 E-value=3e+02 Score=21.67 Aligned_cols=59 Identities=7% Similarity=0.077 Sum_probs=44.4
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC------CcCEEEeccHHHHHHHHHhCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG------QVPAIIVSSPQVAKEVMKTHDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g------~~~~vvv~~~~~ike~l~~~~~~f~~Rp~ 67 (221)
++|||..- --...+.++...||+|-.+++- +.-.|-..|++.++.++.-++..+.|+|.
T Consensus 9 ~V~NLS~~---tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I 73 (243)
T PLN03121 9 EVTNLSPK---ATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVLLSGATIVDQRV 73 (243)
T ss_pred EEecCCCC---CCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHhcCCCeeCCceE
Confidence 35665443 2246788899999999988873 34567788999999999888888888863
No 71
>PF02452 PemK: PemK-like protein; InterPro: IPR003477 PemK is a growth inhibitor in Escherichia coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. It is responsible for mediating cell death through inhibiting protein synthesis through the cleavage of single-stranded RNA. PemK is part of the PemK-PemI system, where PemI is an antitoxin that inhibits the action of the PemK toxin []. PemK homologues have been found in a wide range of bacteria, which together form an endonuclease family that interfere with mRNA function. This family consists of the PemK protein in addition to ChpA, ChpB, Kid and MazF.; GO: 0003677 DNA binding; PDB: 1M1F_A 2C06_A 3NFC_F 1UB4_B 1NE8_A.
Probab=22.07 E-value=55 Score=21.48 Aligned_cols=20 Identities=20% Similarity=0.546 Sum_probs=12.6
Q ss_pred CCceEEEc--------CCcCEEEeccHH
Q 048376 30 GPLMLLQL--------GQVPAIIVSSPQ 49 (221)
Q Consensus 30 G~i~~l~~--------g~~~~vvv~~~~ 49 (221)
|+|+.+++ +.+|+|||++..
T Consensus 3 GdI~~v~~p~~~~e~~k~RP~vVls~~~ 30 (110)
T PF02452_consen 3 GDIVWVDFPDFGSEMGKRRPAVVLSNNA 30 (110)
T ss_dssp TEEEEEE-S--TTS--SEEEEEE-S-HH
T ss_pred ceEEEEECCCCCcccCCcccEEEEEeec
Confidence 66777766 378999999873
No 72
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=21.66 E-value=2.1e+02 Score=25.29 Aligned_cols=58 Identities=19% Similarity=0.401 Sum_probs=41.2
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
++|||..- -....+.+..++||+|..+++-. .-.|...+++.++.++.. +...+.+|+
T Consensus 4 ~VgnLp~~---vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~ 71 (562)
T TIGR01628 4 YVGDLDPD---VTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKP 71 (562)
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCee
Confidence 46777542 12466778889999999888732 346778899999999964 444466776
No 73
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=21.56 E-value=1.1e+02 Score=27.98 Aligned_cols=38 Identities=18% Similarity=0.356 Sum_probs=29.4
Q ss_pred HHHHHHHhhcC-C-ceEEEc--CCcCEEEeccHHHHHHHHHh
Q 048376 20 HRLRDLTNKYG-P-LMLLQL--GQVPAIIVSSPQVAKEVMKT 57 (221)
Q Consensus 20 ~~~~~~~~~YG-~-i~~l~~--g~~~~vvv~~~~~ike~l~~ 57 (221)
.-..++.++|| | |+.--+ |++-+=||.+.|.++|.+.+
T Consensus 174 ~EA~eF~k~yG~PvI~KAAyGGGGRGmRvVr~~e~vee~f~R 215 (1176)
T KOG0369|consen 174 EEALEFVKEYGLPVIIKAAYGGGGRGMRVVRSGEDVEEAFQR 215 (1176)
T ss_pred HHHHHHHHhcCCcEEEeecccCCCcceEEeechhhHHHHHHH
Confidence 44567899999 5 444434 58899999999999999853
No 74
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=21.41 E-value=2.2e+02 Score=17.68 Aligned_cols=35 Identities=9% Similarity=0.193 Sum_probs=22.9
Q ss_pred HHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHh
Q 048376 23 RDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKT 57 (221)
Q Consensus 23 ~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~ 57 (221)
.+--++||+|...-==-.-+++=.|-+.+.++..+
T Consensus 14 ~r~L~kfG~i~Y~Skk~kYvvlYvn~~~~e~~~~k 48 (71)
T PF09902_consen 14 ARQLRKFGDIHYVSKKMKYVVLYVNEEDVEEIIEK 48 (71)
T ss_pred HHhHhhcccEEEEECCccEEEEEECHHHHHHHHHH
Confidence 34457899987775444555666677777777643
No 75
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=20.77 E-value=98 Score=17.93 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=14.6
Q ss_pred CCceEEEcCCcCEEEec
Q 048376 30 GPLMLLQLGQVPAIIVS 46 (221)
Q Consensus 30 G~i~~l~~g~~~~vvv~ 46 (221)
|++++|+-|+-+++|..
T Consensus 4 GDvV~LKSGGp~MTV~~ 20 (53)
T PF09926_consen 4 GDVVQLKSGGPRMTVTE 20 (53)
T ss_pred CCEEEEccCCCCeEEEE
Confidence 89999999998888774
Done!