Query 048376
Match_columns 221
No_of_seqs 108 out of 1177
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 15:27:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048376.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048376hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3swz_A Steroid 17-alpha-hydrox 100.0 9.8E-32 3.4E-36 228.5 19.6 211 1-220 13-250 (494)
2 3pm0_A Cypib1, cytochrome P450 100.0 6.7E-29 2.3E-33 211.4 17.4 213 1-220 14-258 (507)
3 3e6i_A CYPIIE1, P450-J, cytoch 99.9 8.6E-27 3E-31 196.9 19.0 207 1-220 15-250 (476)
4 3tbg_A Cytochrome P450 2D6; mo 99.9 1.4E-26 4.8E-31 195.7 17.8 211 1-219 15-254 (479)
5 2hi4_A Cytochrome P450 1A2; CY 99.9 1.1E-26 3.7E-31 197.7 16.9 209 1-219 21-264 (495)
6 3czh_A Cytochrome P450 2R1; vi 99.9 2.2E-26 7.6E-31 195.2 16.5 210 1-220 17-256 (481)
7 1po5_A Cytochrome P450 2B4; ox 99.9 1.1E-25 3.9E-30 190.5 17.4 207 1-219 15-250 (476)
8 3gw9_A Sterol 14alpha-demethyl 99.9 2.1E-26 7.1E-31 193.2 12.5 206 3-220 11-240 (450)
9 2fdv_A Cytochrome P450 2A6; CY 99.9 1.1E-25 3.8E-30 190.5 16.7 208 1-220 15-251 (476)
10 3nxu_A Cytochrome P450 3A4; al 99.9 2.2E-26 7.6E-31 194.9 12.2 132 1-138 19-173 (485)
11 3k9v_A 1,25-dihydroxyvitamin D 99.9 4.4E-25 1.5E-29 186.6 19.6 206 1-219 29-274 (482)
12 1r9o_A Cytochrome P450 2C9; mo 99.9 1.7E-25 5.7E-30 189.4 15.5 208 1-220 16-252 (477)
13 3qz1_A Steroid 21-hydroxylase; 99.9 3E-26 1E-30 194.6 9.6 200 10-220 37-261 (496)
14 3s79_A Cytochrome P450 19A1; o 99.9 1.1E-24 3.6E-29 185.4 17.9 208 1-220 50-284 (503)
15 3ld6_A Lanosterol 14-alpha dem 99.9 2.1E-25 7.2E-30 188.1 9.8 201 3-220 19-239 (461)
16 2ij2_A Cytochrome P450 BM3; mo 99.9 1.4E-22 4.9E-27 171.4 18.5 204 1-220 8-239 (470)
17 2cib_A Cytochrome P450 51; hem 99.9 2.3E-22 8E-27 169.3 16.7 202 1-220 10-231 (455)
18 3i3k_A Lanosterol 14-alpha dem 99.9 1.8E-23 6.2E-28 176.1 9.7 202 1-220 17-239 (461)
19 3n9y_A Cholesterol SIDE-chain 99.9 4.7E-22 1.6E-26 168.4 16.9 210 2-220 15-267 (487)
20 3dbg_A Putative cytochrome P45 99.9 1.9E-22 6.4E-27 170.3 8.8 200 1-220 28-250 (467)
21 2ve3_A Putative cytochrome P45 99.9 6.6E-21 2.3E-25 160.0 13.9 195 1-220 17-230 (444)
22 3mdm_A Cholesterol 24-hydroxyl 99.8 3.7E-20 1.3E-24 155.6 17.6 195 15-220 9-233 (456)
23 3v8d_A Cholesterol 7-alpha-mon 99.8 2.8E-21 9.5E-26 164.1 5.2 196 1-219 18-244 (491)
24 1n97_A CYP175A1; electron tran 99.8 1.4E-20 4.8E-25 155.6 8.0 178 2-195 5-200 (389)
25 2cd8_A Cytochrome P450 monooxy 99.8 1.4E-19 4.7E-24 151.8 12.6 183 1-220 31-239 (436)
26 1izo_A P450bsbeta, cytochrome 99.8 1.4E-18 4.8E-23 144.7 18.3 192 1-220 5-219 (417)
27 3awm_A Fatty acid alpha-hydrox 99.8 1.8E-18 6.3E-23 143.9 17.8 194 1-220 4-218 (415)
28 1cpt_A Cytochrome P450-TERP; o 99.8 2.3E-19 8E-24 150.0 12.1 199 1-220 8-244 (428)
29 3dax_A Cytochrome P450 7A1; ch 99.8 1.7E-19 5.7E-24 152.9 6.1 132 4-140 22-179 (491)
30 1jfb_A Nitric-oxide reductase 99.8 2.6E-17 8.8E-22 136.5 17.1 183 1-219 6-216 (404)
31 3oo3_A OXY protein; cytochrome 99.8 5.3E-17 1.8E-21 133.8 17.5 172 15-220 11-205 (384)
32 3b6h_A Prostacyclin synthase; 99.7 6.6E-18 2.3E-22 143.4 9.7 131 1-139 23-178 (498)
33 1ued_A P450 OXYC, P450 monooxy 99.7 1E-16 3.5E-21 133.1 16.6 180 1-220 15-224 (406)
34 2zbx_A Cytochrome P450-SU1; be 99.7 2.5E-16 8.6E-21 131.0 17.5 183 1-220 10-221 (412)
35 3ejb_B Biotin biosynthesis cyt 99.7 2.5E-16 8.6E-21 130.5 17.3 176 16-219 13-211 (404)
36 3abb_A CYP105D6, cytochrome P4 99.7 8.2E-17 2.8E-21 133.8 13.8 183 1-220 10-220 (408)
37 4fb2_A P450CIN; heme, monooxyg 99.7 1.5E-16 5E-21 131.8 15.2 171 15-220 18-209 (398)
38 3tkt_A Cytochrome P450; aromat 99.7 1.4E-16 4.8E-21 134.0 13.8 184 18-220 47-266 (450)
39 3tyw_A Putative cytochrome P45 99.7 6.1E-16 2.1E-20 128.9 16.4 171 15-220 28-226 (417)
40 2wm5_A CYP124, putative cytoch 99.7 8.9E-16 3E-20 128.6 16.1 175 17-220 45-251 (435)
41 1z8o_A 6-deoxyerythronolide B 99.7 1E-15 3.4E-20 127.0 16.3 172 15-220 13-217 (404)
42 3aba_A Cytochrome P450; oxidor 99.7 1.3E-15 4.5E-20 126.3 16.7 171 15-220 18-214 (403)
43 3a4g_A Vitamin D hydroxylase; 99.7 8.5E-16 2.9E-20 127.8 13.7 170 15-220 19-212 (411)
44 1s1f_A Putative cytochrome P45 99.7 4.8E-16 1.6E-20 129.1 11.9 179 3-220 15-220 (406)
45 3ivy_A Cytochrome P450 CYP125; 99.7 4.5E-16 1.5E-20 130.3 11.7 174 16-220 37-245 (433)
46 2y5n_A MYCG, P-450-like protei 99.7 1.6E-15 5.4E-20 126.4 14.3 172 15-220 36-231 (417)
47 2zwu_A Camphor 5-monooxygenase 99.7 4E-15 1.4E-19 123.9 16.2 166 16-220 37-226 (415)
48 3b98_A Prostaglandin I2 syntha 99.7 8.3E-17 2.8E-21 135.8 5.9 103 1-112 23-127 (475)
49 2z36_A MOXA, cytochrome P450 t 99.6 2.7E-15 9.1E-20 124.9 14.8 170 15-220 21-222 (413)
50 1q5d_A P450 epoxidase; cytochr 99.6 1.2E-15 4.2E-20 127.1 12.8 178 15-220 25-231 (419)
51 2z3t_A Cytochrome P450; monoxy 99.6 3.4E-15 1.2E-19 124.7 15.1 177 16-220 20-231 (425)
52 2xkr_A CYP142, putative cytoch 99.6 9.8E-15 3.3E-19 120.8 17.6 171 16-220 18-207 (398)
53 1odo_A Putative cytochrome P45 99.6 1.5E-15 5E-20 126.2 11.8 173 12-220 12-216 (408)
54 2uuq_A CYP130, cytochrome P450 99.6 5.7E-15 1.9E-19 122.9 15.0 181 6-220 11-225 (414)
55 3r9b_A Cytochrome P450 164A2; 99.6 7.3E-15 2.5E-19 122.3 15.0 180 15-220 28-233 (418)
56 1gwi_A CYP154C1, cytochrome P4 99.6 1.5E-14 5.1E-19 120.3 15.6 173 12-220 14-219 (411)
57 3lxh_A Cytochrome P450; heme, 99.6 2.4E-14 8.4E-19 119.3 16.0 176 16-220 38-233 (421)
58 2xbk_A PIMD protein; epoxidati 99.6 3.6E-14 1.2E-18 117.7 16.0 167 15-218 25-221 (404)
59 2jjn_A Cytochrome P450 113A1; 99.6 1.8E-14 6.2E-19 119.7 13.7 173 17-220 29-218 (411)
60 3nc3_A Cytochrome P450 CYPX; c 99.6 1.3E-14 4.6E-19 121.6 12.4 174 17-220 54-246 (441)
61 3buj_A CALO2; heme, iron, meta 99.6 2E-14 6.9E-19 118.9 13.2 172 17-220 14-211 (397)
62 3mgx_A Putative P450 monooxyge 99.6 2.2E-14 7.5E-19 119.5 13.2 174 16-220 37-235 (415)
63 1lfk_A OXYB, P450 monooxygenas 99.5 9.2E-14 3.1E-18 115.0 14.3 166 21-220 18-215 (398)
64 2dkk_A Cytochrome P450; CYP158 99.5 5.8E-14 2E-18 116.7 11.2 170 16-220 27-223 (411)
65 3oft_A Cytochrome P450, CYP101 99.5 1.3E-13 4.3E-18 114.0 13.2 169 16-220 24-211 (396)
66 3dsk_A Cytochrome P450 74A, ch 99.5 4.9E-14 1.7E-18 119.5 7.8 134 1-138 33-205 (495)
67 1n40_A P450 MT2, cytochrome P4 99.5 8.5E-14 2.9E-18 115.1 8.6 123 15-147 15-165 (396)
68 3b4x_A 367AA long hypothetical 99.4 6.9E-13 2.4E-17 108.6 11.4 165 18-220 1-192 (367)
69 3rwl_A Cytochrome P450 alkane 99.4 6.3E-12 2.1E-16 104.9 16.6 176 17-220 39-243 (426)
70 3dan_A Cytochrome P450 74A2; A 99.4 2.6E-12 8.9E-17 108.1 12.6 135 1-138 14-187 (473)
71 1io7_A Cytochrome P450 CYP119; 99.4 2.5E-12 8.6E-17 105.2 10.6 115 18-141 1-143 (368)
72 3p3o_A Cytochrome P450; monoox 99.4 9.7E-13 3.3E-17 109.5 7.5 176 16-220 33-231 (416)
73 2wiy_A XPLA-heme, cytochrome P 99.3 5.4E-11 1.8E-15 98.2 15.0 173 17-220 21-211 (394)
74 2rfb_A Cytochrome P450; heme, 99.3 2.8E-11 9.4E-16 98.1 10.4 110 27-148 2-127 (343)
75 4dnj_A Putative cytochrome P45 98.8 3.3E-08 1.1E-12 82.0 11.5 109 2-116 18-132 (412)
76 4dxy_A Cytochrome P450, CYP101 98.4 1.3E-05 4.5E-10 66.5 15.5 96 17-116 38-134 (417)
77 2yjn_B Erycii, DTDP-4-keto-6-d 96.5 0.00088 3E-08 54.8 1.7 58 3-67 42-103 (381)
78 2diu_A KIAA0430 protein; struc 92.9 0.26 8.8E-06 31.6 5.4 59 7-67 14-76 (96)
79 2krb_A Eukaryotic translation 90.9 0.9 3.1E-05 27.6 6.3 59 6-65 5-75 (81)
80 1s79_A Lupus LA protein; RRM, 88.7 1.2 4.1E-05 28.7 5.7 59 6-67 15-81 (103)
81 1iqt_A AUF1, heterogeneous nuc 87.8 0.95 3.3E-05 26.8 4.6 59 6-67 3-70 (75)
82 2mss_A Protein (musashi1); RNA 87.6 1.7 5.9E-05 25.7 5.6 59 6-67 3-70 (75)
83 4fxv_A ELAV-like protein 1; RN 85.1 1.9 6.6E-05 27.4 5.1 58 6-66 23-90 (99)
84 2nlw_A Eukaryotic translation 85.1 1.4 4.7E-05 28.3 4.5 60 5-65 18-89 (105)
85 2cph_A RNA binding motif prote 84.7 4.5 0.00015 25.7 6.9 59 6-67 19-89 (107)
86 1x5u_A Splicing factor 3B subu 84.3 4.9 0.00017 25.4 6.9 59 6-67 19-87 (105)
87 1whx_A Hypothetical protein ri 83.4 4.6 0.00016 26.1 6.5 59 6-67 14-76 (111)
88 1x5p_A Negative elongation fac 82.6 2.1 7.1E-05 26.9 4.5 56 6-66 19-78 (97)
89 2dgs_A DAZ-associated protein 82.5 4.3 0.00015 25.4 6.0 59 6-67 14-81 (99)
90 2kvi_A Nuclear polyadenylated 81.9 4.4 0.00015 25.3 5.9 59 6-67 14-75 (96)
91 3ex7_B RNA-binding protein 8A; 81.8 5.6 0.00019 26.1 6.7 59 6-67 26-94 (126)
92 3mdf_A Peptidyl-prolyl CIS-tra 81.2 4.5 0.00015 24.4 5.6 58 6-66 11-78 (85)
93 3beg_B Splicing factor, argini 81.0 6.4 0.00022 25.6 6.6 58 6-66 20-80 (115)
94 3s7r_A Heterogeneous nuclear r 80.3 1.8 6.2E-05 26.5 3.5 58 6-66 15-81 (87)
95 1whw_A Hypothetical protein ri 80.2 6.2 0.00021 24.6 6.2 58 6-66 12-79 (99)
96 3ucg_A Polyadenylate-binding p 80.1 3.2 0.00011 25.3 4.6 59 6-67 10-77 (89)
97 4f25_A Polyadenylate-binding p 79.9 3.8 0.00013 26.7 5.2 60 5-67 8-75 (115)
98 3md1_A Nuclear and cytoplasmic 79.7 4.1 0.00014 24.4 5.0 58 6-66 5-72 (83)
99 2hvz_A Splicing factor, argini 79.6 4 0.00014 25.7 5.1 59 6-67 4-67 (101)
100 1p27_B RNA-binding protein 8A; 79.0 5.8 0.0002 25.1 5.8 59 6-67 27-95 (106)
101 4a8x_A RNA-binding protein wit 79.0 5.2 0.00018 24.2 5.4 58 6-66 8-76 (88)
102 2fy1_A RNA-binding motif prote 78.7 6.6 0.00023 25.6 6.1 59 6-67 11-78 (116)
103 3lqv_A PRE-mRNA branch site pr 78.6 7.9 0.00027 24.9 6.5 59 6-67 12-77 (115)
104 2bz2_A Negative elongation fac 78.3 4 0.00014 27.0 4.9 57 6-67 43-103 (121)
105 3bs9_A Nucleolysin TIA-1 isofo 78.1 5.5 0.00019 24.1 5.3 58 6-66 10-77 (87)
106 2do4_A Squamous cell carcinoma 78.1 5.5 0.00019 24.9 5.4 58 6-66 21-87 (100)
107 2dgx_A KIAA0430 protein; RRM d 77.8 3.4 0.00012 25.9 4.3 58 6-66 13-81 (96)
108 2cq3_A RNA-binding protein 9; 77.6 5.2 0.00018 25.2 5.2 59 6-67 19-85 (103)
109 2ytc_A PRE-mRNA-splicing facto 77.5 4.5 0.00015 24.4 4.7 58 6-66 16-78 (85)
110 2dgv_A HnRNP M, heterogeneous 77.5 6.7 0.00023 24.0 5.6 59 6-67 12-78 (92)
111 2rs2_A Musashi-1, RNA-binding 77.4 5.1 0.00018 25.8 5.2 58 6-66 29-95 (109)
112 2div_A TRNA selenocysteine ass 76.8 7.4 0.00025 24.2 5.8 58 6-66 13-81 (99)
113 2i2y_A Fusion protein consists 76.7 9.6 0.00033 25.9 6.7 59 6-67 77-140 (150)
114 2jvo_A Nucleolar protein 3; nu 76.6 5.1 0.00017 25.8 5.0 58 6-66 35-94 (108)
115 2kn4_A Immunoglobulin G-bindin 76.6 7.3 0.00025 26.7 6.1 59 6-67 74-142 (158)
116 2cpz_A CUG triplet repeat RNA- 76.5 5.2 0.00018 25.9 5.1 59 6-67 29-97 (115)
117 1x5s_A Cold-inducible RNA-bind 76.2 8.8 0.0003 24.0 6.0 59 6-67 16-84 (102)
118 2pe8_A Splicing factor 45; RRM 76.1 6 0.00021 25.4 5.2 64 4-67 10-86 (105)
119 2jvr_A Nucleolar protein 3; RN 75.9 5.3 0.00018 26.1 4.9 58 6-66 32-96 (111)
120 1uaw_A Mouse-musashi-1; RNP-ty 75.7 4.7 0.00016 23.7 4.4 58 6-66 4-70 (77)
121 3ns6_A Eukaryotic translation 75.7 7.6 0.00026 24.4 5.6 62 6-67 10-85 (100)
122 3p5t_L Cleavage and polyadenyl 75.6 5.7 0.00019 24.4 4.8 59 6-67 5-75 (90)
123 1wg5_A Heterogeneous nuclear r 75.6 6.9 0.00023 24.8 5.4 59 6-67 19-86 (104)
124 2dnz_A Probable RNA-binding pr 75.5 10 0.00034 23.3 6.1 59 6-67 9-77 (95)
125 2dgu_A Heterogeneous nuclear r 75.0 6.2 0.00021 24.9 5.0 58 6-66 15-74 (103)
126 2dgo_A Cytotoxic granule-assoc 74.8 6.8 0.00023 25.2 5.3 59 6-67 19-87 (115)
127 2dnm_A SRP46 splicing factor; 74.7 6.4 0.00022 24.8 5.0 59 6-67 17-85 (103)
128 2a3j_A U1 small nuclear ribonu 74.4 8.9 0.0003 25.6 5.8 62 6-67 33-102 (127)
129 2xnq_A Nuclear polyadenylated 74.4 8.5 0.00029 24.1 5.5 58 6-66 26-86 (97)
130 2d9p_A Polyadenylate-binding p 74.3 5.6 0.00019 25.0 4.7 59 6-67 19-85 (103)
131 3ulh_A THO complex subunit 4; 74.2 5.4 0.00018 25.3 4.6 58 6-66 33-99 (107)
132 1oo0_B CG8781-PA, drosophila Y 74.2 8.3 0.00029 24.6 5.6 58 6-66 30-97 (110)
133 2j76_E EIF-4B, EIF4B, eukaryot 73.9 9.6 0.00033 23.9 5.7 58 6-67 23-90 (100)
134 2dh8_A DAZ-associated protein 73.5 3.4 0.00012 26.3 3.4 59 6-67 20-87 (105)
135 2cqi_A Nucleolysin TIAR; RNA r 73.4 5.8 0.0002 25.0 4.6 58 6-66 19-84 (103)
136 2dnp_A RNA-binding protein 14; 73.4 8.7 0.0003 23.4 5.3 59 6-67 13-73 (90)
137 2dgt_A RNA-binding protein 30; 73.3 6.9 0.00024 24.0 4.8 58 6-66 14-73 (92)
138 1nu4_A U1A RNA binding domain; 73.2 11 0.00037 23.3 5.8 59 5-66 11-80 (97)
139 2cpi_A CCR4-NOT transcription 73.1 2.7 9.1E-05 27.2 2.9 59 6-67 19-93 (111)
140 2lea_A Serine/arginine-rich sp 73.0 11 0.00038 25.2 6.2 59 6-67 51-119 (135)
141 2e5j_A Methenyltetrahydrofolat 72.8 11 0.00038 23.3 5.8 59 6-67 23-86 (97)
142 1x4g_A Nucleolysin TIAR; struc 72.7 8 0.00027 24.7 5.2 59 6-67 29-91 (109)
143 1x4b_A Heterogeneous nuclear r 72.7 3.9 0.00013 26.5 3.7 58 6-66 31-97 (116)
144 2dhg_A TRNA selenocysteine ass 72.4 11 0.00036 23.7 5.7 59 6-67 13-82 (104)
145 2cqd_A RNA-binding region cont 72.2 9.7 0.00033 24.5 5.6 59 6-67 21-88 (116)
146 1sjq_A Polypyrimidine tract-bi 72.0 7.9 0.00027 25.0 4.9 60 5-67 19-84 (105)
147 2cqb_A Peptidyl-prolyl CIS-tra 71.8 4.7 0.00016 25.4 3.8 59 5-66 15-83 (102)
148 2jwn_A Embryonic polyadenylate 71.6 5.4 0.00018 26.2 4.2 59 6-67 40-107 (124)
149 2cpj_A Non-POU domain-containi 71.5 6.1 0.00021 24.7 4.3 59 6-67 19-81 (99)
150 2d9o_A DNAJ (HSP40) homolog, s 71.3 14 0.00049 23.4 6.0 48 19-67 31-82 (100)
151 2err_A Ataxin-2-binding protei 71.1 4.6 0.00016 26.0 3.7 58 6-66 33-98 (109)
152 2ywk_A Putative RNA-binding pr 71.0 8.1 0.00028 23.8 4.8 58 6-66 20-86 (95)
153 1p1t_A Cleavage stimulation fa 70.8 11 0.00039 23.5 5.5 58 6-66 12-79 (104)
154 1x4a_A Splicing factor, argini 70.6 12 0.00042 23.7 5.7 59 6-67 26-91 (109)
155 2dnh_A Bruno-like 5, RNA bindi 70.2 14 0.00047 23.2 5.9 56 6-64 19-83 (105)
156 2la4_A Nuclear and cytoplasmic 70.0 8.7 0.0003 24.0 4.8 58 6-66 31-92 (101)
157 3n9u_C Cleavage and polyadenyl 69.8 8.9 0.0003 26.6 5.1 58 6-66 59-128 (156)
158 1h2v_Z 20 kDa nuclear CAP bind 69.7 10 0.00035 26.0 5.5 59 6-67 43-111 (156)
159 2e44_A Insulin-like growth fac 69.5 17 0.00057 22.3 6.3 59 6-67 19-84 (96)
160 2cjk_A Nuclear polyadenylated 69.3 12 0.00041 25.5 5.9 59 6-67 91-158 (167)
161 2cpf_A RNA binding motif prote 69.1 11 0.00036 23.4 5.1 60 5-67 8-80 (98)
162 2dnq_A RNA-binding protein 4B; 69.0 17 0.00057 22.1 6.0 59 6-67 12-72 (90)
163 2hzc_A Splicing factor U2AF 65 68.9 11 0.00037 22.7 5.0 58 6-66 10-81 (87)
164 2cqc_A Arginine/serine-rich sp 68.9 7.8 0.00027 23.8 4.3 58 6-66 19-86 (95)
165 3s8s_A Histone-lysine N-methyl 68.6 11 0.00037 24.3 5.1 59 5-66 9-77 (110)
166 2dis_A Unnamed protein product 67.8 17 0.00057 23.0 5.9 59 6-67 12-84 (109)
167 2e5g_A U6 snRNA-specific termi 67.5 11 0.00037 23.2 4.8 59 6-67 12-74 (94)
168 2x1f_A MRNA 3'-END-processing 67.5 15 0.0005 22.7 5.5 60 4-66 4-73 (96)
169 1u6f_A Tcubp1, RNA-binding pro 67.5 9.8 0.00034 25.4 4.9 58 6-66 46-113 (139)
170 2cq4_A RNA binding motif prote 67.4 6.2 0.00021 25.4 3.7 58 6-66 29-95 (114)
171 1rk8_A CG8781-PA, CG8781-PA pr 67.4 9.5 0.00032 26.5 4.9 60 5-67 75-144 (165)
172 2la6_A RNA-binding protein FUS 67.3 17 0.00059 22.5 5.8 58 6-66 17-92 (99)
173 1x4c_A Splicing factor, argini 66.9 14 0.00049 23.4 5.4 56 6-64 19-77 (108)
174 2jrs_A RNA-binding protein 39; 66.9 17 0.00056 23.2 5.7 59 6-67 30-98 (108)
175 2do0_A HnRNP M, heterogeneous 66.3 9.5 0.00032 24.4 4.5 59 6-67 19-86 (114)
176 2wbr_A GW182, gawky, LD47780P; 66.3 14 0.00048 23.1 4.9 50 4-56 9-61 (89)
177 2voo_A Lupus LA protein; RNA-b 66.0 7.5 0.00026 28.0 4.3 59 6-67 113-179 (193)
178 2cq0_A Eukaryotic translation 65.8 6.3 0.00022 24.8 3.5 58 6-66 19-86 (103)
179 1wf1_A RNA-binding protein RAL 65.8 7.8 0.00027 24.8 4.0 60 6-67 31-92 (110)
180 2kxn_B Transformer-2 protein h 65.4 27 0.00091 23.1 7.0 60 5-67 49-118 (129)
181 2e5h_A Zinc finger CCHC-type a 65.1 12 0.00039 23.0 4.6 59 5-66 19-87 (94)
182 1l3k_A Heterogeneous nuclear r 64.6 10 0.00035 26.8 4.8 59 6-67 108-175 (196)
183 1l3k_A Heterogeneous nuclear r 64.5 10 0.00034 26.8 4.7 59 6-67 17-84 (196)
184 2cqg_A TDP-43, TAR DNA-binding 64.3 13 0.00043 23.3 4.7 57 6-66 19-84 (103)
185 1why_A Hypothetical protein ri 63.9 23 0.00078 21.8 7.1 59 6-67 21-85 (97)
186 2cpy_A RNA-binding protein 12; 63.3 6.8 0.00023 25.3 3.3 58 6-66 19-85 (114)
187 2khc_A Testis-specific RNP-typ 63.0 9.7 0.00033 24.6 4.1 58 6-66 44-111 (118)
188 1x4f_A Matrin 3; structural ge 63.0 13 0.00045 24.2 4.6 61 5-67 28-94 (112)
189 2ki2_A SS-DNA binding protein 63.0 12 0.0004 22.7 4.3 58 6-67 5-72 (90)
190 1x5t_A Splicing factor 3B subu 62.9 9.4 0.00032 23.5 3.9 59 6-67 9-78 (96)
191 1x4h_A RNA-binding protein 28; 62.6 18 0.00062 22.8 5.3 59 5-66 18-92 (111)
192 2kt5_A RNA and export factor-b 62.1 19 0.00065 23.4 5.5 58 6-66 39-105 (124)
193 2cpe_A RNA-binding protein EWS 61.2 17 0.00059 23.1 5.0 59 6-67 19-95 (113)
194 2dgp_A Bruno-like 4, RNA bindi 61.0 27 0.00093 21.8 6.3 59 6-67 17-88 (106)
195 2cpd_A Apobec-1 stimulating pr 61.0 19 0.00064 22.3 5.1 58 6-66 19-80 (99)
196 2adc_A Polypyrimidine tract-bi 61.0 23 0.0008 25.9 6.3 60 6-67 38-102 (229)
197 1qm9_A Polypyrimidine tract-bi 60.7 25 0.00084 24.8 6.3 60 6-67 7-71 (198)
198 1sjr_A Polypyrimidine tract-bi 59.8 28 0.00097 24.4 6.1 55 7-64 51-111 (164)
199 2xs2_A Deleted in azoospermia- 59.5 4.6 0.00016 25.5 1.9 58 6-67 13-78 (102)
200 2ghp_A U4/U6 snRNA-associated 59.0 13 0.00044 28.3 4.7 86 6-98 45-139 (292)
201 2f3j_A RNA and export factor b 58.8 27 0.00094 24.6 6.1 59 6-67 92-159 (177)
202 3md3_A Nuclear and cytoplasmic 58.7 15 0.00052 24.9 4.7 59 6-67 4-71 (166)
203 2cpx_A Hypothetical protein FL 58.4 12 0.00041 23.9 3.9 59 6-67 29-97 (115)
204 2ku7_A MLL1 PHD3-CYP33 RRM chi 57.4 17 0.00059 24.0 4.7 57 6-65 67-133 (140)
205 1x4d_A Matrin 3; structural ge 57.2 15 0.00051 23.5 4.0 61 5-67 18-84 (102)
206 2hgn_A Heterogeneous nuclear r 57.2 22 0.00074 24.1 5.1 58 6-67 50-115 (139)
207 1wi8_A EIF-4B, eukaryotic tran 57.1 21 0.00072 22.3 4.8 58 6-67 19-86 (104)
208 1wex_A Hypothetical protein (r 56.7 35 0.0012 21.6 6.2 61 4-67 17-83 (104)
209 3ue2_A Poly(U)-binding-splicin 55.9 18 0.0006 23.8 4.3 64 4-67 22-101 (118)
210 2cq1_A PTB-like protein L; RRM 55.4 18 0.0006 23.0 4.2 60 5-67 18-83 (101)
211 2lmi_A GRSF-1, G-rich sequence 54.8 22 0.00076 22.4 4.7 58 6-66 15-83 (107)
212 3pgw_A U1-A; protein-RNA compl 54.6 20 0.00068 27.1 5.1 62 5-67 12-82 (282)
213 3pgw_S U1-70K; protein-RNA com 54.5 20 0.0007 29.5 5.4 60 5-67 105-174 (437)
214 2qfj_A FBP-interacting repress 53.6 33 0.0011 24.4 6.0 59 6-67 129-197 (216)
215 3v4m_A Splicing factor U2AF 65 53.3 29 0.001 22.0 5.0 48 20-67 30-89 (105)
216 2dnr_A Synaptojanin-1; RRM dom 52.9 31 0.001 21.7 4.8 47 20-66 30-77 (91)
217 2ad9_A Polypyrimidine tract-bi 52.6 31 0.0011 22.7 5.1 60 5-67 34-99 (119)
218 1jmt_A Splicing factor U2AF 35 51.3 26 0.00088 22.2 4.5 41 27-67 49-98 (104)
219 3q2s_C Cleavage and polyadenyl 51.3 23 0.00078 26.2 4.8 59 6-67 72-142 (229)
220 2dng_A Eukaryotic translation 50.8 25 0.00085 21.9 4.4 58 6-67 19-85 (103)
221 2qfj_A FBP-interacting repress 50.8 56 0.0019 23.1 6.9 59 6-67 32-100 (216)
222 1wez_A HnRNP H', FTP-3, hetero 50.3 14 0.00047 23.4 3.0 58 6-67 19-84 (102)
223 1fxl_A Paraneoplastic encephal 50.0 34 0.0012 23.0 5.3 59 6-67 6-74 (167)
224 3s6e_A RNA-binding protein 39; 49.6 32 0.0011 22.4 4.8 47 21-67 33-85 (114)
225 2cjk_A Nuclear polyadenylated 49.5 30 0.001 23.4 5.0 57 6-66 7-72 (167)
226 4f02_A Polyadenylate-binding p 49.2 30 0.001 24.9 5.2 59 6-67 107-173 (213)
227 3tyt_A Heterogeneous nuclear r 49.0 35 0.0012 24.6 5.4 60 5-67 7-72 (205)
228 2dha_A FLJ20171 protein; RRM d 49.0 18 0.0006 24.0 3.5 57 6-65 27-95 (123)
229 1x4e_A RNA binding motif, sing 48.1 27 0.00094 20.7 4.1 48 6-56 9-65 (85)
230 1b35_D CRPV, protein (cricket 47.7 8.8 0.0003 20.9 1.4 26 4-30 31-56 (57)
231 2db1_A Heterogeneous nuclear r 47.1 12 0.00042 24.3 2.4 58 6-66 21-89 (118)
232 1wf0_A TDP-43, TAR DNA-binding 46.5 33 0.0011 20.5 4.3 47 6-55 9-59 (88)
233 2e5i_A Heterogeneous nuclear r 46.3 42 0.0015 22.2 5.1 55 7-64 30-89 (124)
234 2cqh_A IGF-II mRNA-binding pro 46.0 27 0.00091 21.2 3.9 59 6-67 12-75 (93)
235 3zzy_A Polypyrimidine tract-bi 45.8 39 0.0013 22.7 4.8 56 6-64 32-93 (130)
236 3d2w_A TAR DNA-binding protein 44.4 51 0.0017 19.9 5.0 46 6-54 15-64 (89)
237 3ctr_A Poly(A)-specific ribonu 43.1 20 0.00068 23.0 2.8 55 12-66 12-69 (101)
238 2hgl_A HNRPF protein, heteroge 43.1 16 0.00055 24.7 2.6 58 6-66 48-116 (136)
239 1x5o_A RNA binding motif, sing 42.8 46 0.0016 21.0 4.8 58 6-66 29-95 (114)
240 2yh0_A Splicing factor U2AF 65 42.7 25 0.00087 24.6 3.8 58 6-66 118-185 (198)
241 2hgm_A HNRPF protein, heteroge 41.7 41 0.0014 22.3 4.4 58 6-67 46-113 (126)
242 2m2b_A RNA-binding protein 10; 41.5 72 0.0025 20.8 5.8 58 6-67 27-100 (131)
243 1b7f_A Protein (SXL-lethal pro 39.9 83 0.0028 21.0 6.2 46 19-64 103-158 (168)
244 3r27_A HnRNP L, heterogeneous 39.7 71 0.0024 20.2 5.8 50 4-56 23-75 (100)
245 2cq2_A Hypothetical protein LO 39.6 77 0.0026 20.6 5.8 50 5-57 28-82 (114)
246 1ufw_A Synaptojanin 2; RNP dom 39.3 38 0.0013 21.4 3.7 47 20-66 39-86 (95)
247 1whv_A Poly(A)-specific ribonu 39.2 67 0.0023 20.5 4.8 47 19-65 29-78 (100)
248 2dnn_A RNA-binding protein 12; 38.8 42 0.0014 21.5 4.0 57 6-66 20-84 (109)
249 4f02_A Polyadenylate-binding p 38.3 58 0.002 23.3 5.2 58 6-66 19-86 (213)
250 3sde_A Paraspeckle component 1 38.3 40 0.0014 25.2 4.5 86 6-97 26-117 (261)
251 2dgw_A Probable RNA-binding pr 37.7 36 0.0012 20.5 3.5 57 6-66 14-78 (91)
252 1b7f_A Protein (SXL-lethal pro 37.2 77 0.0026 21.2 5.5 59 6-67 7-75 (168)
253 2g4b_A Splicing factor U2AF 65 36.9 53 0.0018 22.2 4.7 59 6-67 8-80 (172)
254 2fc9_A NCL protein; structure 35.2 23 0.00079 21.9 2.3 58 6-66 19-82 (101)
255 1wel_A RNA-binding protein 12; 34.5 20 0.00067 23.4 1.9 58 6-66 29-95 (124)
256 2dit_A HIV TAT specific factor 34.4 48 0.0016 21.0 3.8 48 20-67 41-94 (112)
257 2g4b_A Splicing factor U2AF 65 32.2 50 0.0017 22.4 3.9 58 6-66 98-165 (172)
258 1fj7_A Nucleolin RBD1, protein 32.2 31 0.0011 21.3 2.5 59 6-67 21-87 (101)
259 3ibp_A Chromosome partition pr 30.5 32 0.0011 26.7 2.6 28 25-59 140-167 (302)
260 1fxl_A Paraneoplastic encephal 29.4 1.2E+02 0.0043 20.0 6.6 48 19-66 102-159 (167)
261 3pgw_A U1-A; protein-RNA compl 28.8 1E+02 0.0035 22.9 5.4 48 6-56 211-262 (282)
262 2lxi_A RNA-binding protein 10; 27.6 55 0.0019 19.8 3.1 58 6-66 5-74 (91)
263 2ek1_A RNA-binding protein 12; 27.6 35 0.0012 20.7 2.1 58 6-66 19-86 (95)
264 2cqp_A RNA-binding protein 12; 27.2 31 0.001 21.1 1.8 58 6-66 19-86 (98)
265 2lkz_A RNA-binding protein 5; 26.7 82 0.0028 19.4 3.8 48 6-56 13-71 (95)
266 2wmm_A Chromosome partition pr 26.7 17 0.00058 25.2 0.5 19 40-58 67-85 (162)
267 3egn_A RNA-binding protein 40; 26.7 70 0.0024 21.2 3.7 59 6-67 49-122 (143)
268 1fjc_A Nucleolin RBD2, protein 25.4 35 0.0012 20.7 1.8 58 6-66 20-82 (96)
269 2dnl_A Cytoplasmic polyadenyla 24.6 1.4E+02 0.0046 18.8 4.7 49 6-57 12-71 (114)
270 1qm9_A Polypyrimidine tract-bi 23.1 1.9E+02 0.0065 20.0 6.5 57 7-66 125-188 (198)
271 1m1f_A KID toxin protein; toxi 23.0 42 0.0014 21.4 1.9 21 30-50 4-33 (110)
272 3qf7_D MRE11; ABC-ATPase, ATPa 22.3 78 0.0027 16.5 2.4 20 180-199 22-41 (50)
273 2lcw_A RNA-binding protein FUS 27.1 20 0.00067 23.0 0.0 60 5-67 10-87 (116)
274 2qv6_A MJ0145, GTP cyclohydrol 21.4 1.1E+02 0.0039 23.3 4.2 36 20-56 164-202 (268)
275 3smz_A Protein raver-1, ribonu 21.4 1.6E+02 0.0056 21.8 5.3 59 6-67 99-167 (284)
276 3nmr_A Cugbp ELAV-like family 20.7 1.9E+02 0.0067 19.2 5.3 39 19-57 109-155 (175)
277 2adc_A Polypyrimidine tract-bi 20.5 2.4E+02 0.0083 20.2 6.5 58 6-66 155-219 (229)
No 1
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=100.00 E-value=9.8e-32 Score=228.54 Aligned_cols=211 Identities=20% Similarity=0.369 Sum_probs=157.2
Q ss_pred CCCCcccccccccCCC-CccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCCC
Q 048376 1 PWKLPLIGNLHQLAGS-LPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNYR 79 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~-~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~~ 79 (221)
|+++|+|||++++... .++..+.+|+++||+||++++|++++|||+||++|+|+|++++..|++||.......+..++.
T Consensus 13 P~~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~~k~il~~~~~~f~~rp~~~~~~~~~~~~~ 92 (494)
T 3swz_A 13 LLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATLDIASNNRK 92 (494)
T ss_dssp CBCCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTBBCCCCHHHHHHTTTTC
T ss_pred CCCCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCCCCEEEECCHHHHHHHHHhCcHhhCCCCCcHHHHHhccCCC
Confidence 4559999999998543 568899999999999999999999999999999999999999999999998766655554456
Q ss_pred ceeeCCCChHHHHHHHHHHHhhcCH--HHHHHhHHHHHH--------------------HHHHHHHHHHHHHHHhCCCCC
Q 048376 80 DIVFSPYGDSWKQLRKICVSELLSA--KRVQSFQSIREK--------------------SKIYSLMYGITSRAAFGNRSR 137 (221)
Q Consensus 80 ~~~~~~~g~~Wk~~Rr~~~~~~~~~--~~~~~~~~i~~~--------------------~~~~~~~~~vi~~~~fG~~~~ 137 (221)
+++++++|+.||.+||++.+ .|+. ..+..+..++.+ ..+..++++||+.++||.+++
T Consensus 93 gl~~~~~g~~wr~~Rr~~~~-~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~~~ 171 (494)
T 3swz_A 93 GIAFADSGAHWQLHRRLAMA-TFALFKDGDQKLEKIICQEISTLCDMLATHNGQSIDISFPVFVAVTNVISLICFNTSYK 171 (494)
T ss_dssp SSSSSCSSHHHHHHHHHHHH-HTTTTSSSTTCHHHHHHHHHHHHHHHHHHTTTEEECCHHHHHHHHHHHHHHHHHSCCCC
T ss_pred CeEeCCCCHHHHHHHHHHHH-HHHHhcchHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHcCCcCC
Confidence 77778789999999999754 4431 112222222211 578889999999999999987
Q ss_pred ChhHH----HHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCc
Q 048376 138 DQEAF----ASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDED 213 (221)
Q Consensus 138 ~~~~~----~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d 213 (221)
.++.. ....+.+........+.+++|++++++ ....+++.+..+.+.++++++++++++..+. + .++|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~p--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~---~~~d 243 (494)
T 3swz_A 172 NGDPELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFP--NKTLEKLKSHVKIRNDLLNKILENYKEKFRS---D---SITN 243 (494)
T ss_dssp TTCTHHHHHHHHHHHHHHHHCSSSSCCSSCGGGTSC--CSHHHHHHHHHHHHHHHHHHHHHHHTTTCCT---T---CCCS
T ss_pred CCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---c---chhH
Confidence 54422 222333334444456678899988652 2334566677788888999999888776543 2 4689
Q ss_pred HHHHhhc
Q 048376 214 LVDVLLK 220 (221)
Q Consensus 214 ~ld~ll~ 220 (221)
|+|.||+
T Consensus 244 ~l~~ll~ 250 (494)
T 3swz_A 244 MLDTLMQ 250 (494)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999874
No 2
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=99.96 E-value=6.7e-29 Score=211.42 Aligned_cols=213 Identities=20% Similarity=0.395 Sum_probs=144.0
Q ss_pred CCCCcccccccccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCCCc
Q 048376 1 PWKLPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNYRD 80 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~~~ 80 (221)
|+++|++||++++ .++++..+.+|.++||+||++++|+.++|||+||++|+++|++++..|++||..+....+. ++.+
T Consensus 14 P~~~P~iG~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~~~~~~-~g~~ 91 (507)
T 3pm0_A 14 PFAWPLIGNAAAV-GQAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQGSAFADRPSFASFRVVS-GGRS 91 (507)
T ss_dssp ---------------CCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTSCBCCCCHHHHHGG-GGTC
T ss_pred CCCCCeeCchhhc-CccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCcchHHHhhc-CCCc
Confidence 5679999999999 5778899999999999999999999999999999999999999999999999876555443 3456
Q ss_pred eeeCCCChHHHHHHHHHHHhh--cCHHH---HHHhHHHHHH----------------------HHHHHHHHHHHHHHHhC
Q 048376 81 IVFSPYGDSWKQLRKICVSEL--LSAKR---VQSFQSIREK----------------------SKIYSLMYGITSRAAFG 133 (221)
Q Consensus 81 ~~~~~~g~~Wk~~Rr~~~~~~--~~~~~---~~~~~~i~~~----------------------~~~~~~~~~vi~~~~fG 133 (221)
++++.+|+.|+++||++.+.+ +.... .+.+.+.+.+ +.+..+++++|+.++||
T Consensus 92 l~~~~~g~~w~~~R~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fG 171 (507)
T 3pm0_A 92 MAFGHYSEHWKVQRRAAHSMMRNFFTRQPRSRQVLEGHVLSEARELVALLVRGSADGAFLDPRPLTVVAVANVMSAVCFG 171 (507)
T ss_dssp SSSSCSSHHHHHHHHHHHHHHHHSTTSSTTHHHHHHHHHHHHHHHHHHHHHHTTGGGCCBCCHHHHHHHHHHHHHHHHTS
T ss_pred eEECCCChHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhcccCCCcChHHHHHHHHHHHHHHHHcc
Confidence 767778999999999975432 11111 1112221111 67899999999999999
Q ss_pred CCCCChh-HHH---HHHHHHHHHcCCCccccccccccchh-hhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC
Q 048376 134 NRSRDQE-AFA---SVRGEITKLMSGFNIADMFPSVGLLQ-WLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKI 208 (221)
Q Consensus 134 ~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~P~l~~l~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 208 (221)
.+++..+ .+. ..+...........+.+++|++++++ ++.+..++..+..+.+.+++.+.++++++..+. .
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~-- 246 (507)
T 3pm0_A 172 CRYSHDDPEFRELLSHNEEFGRTVGAGSLVDVMPWLQYFPNPVRTVFREFEQLNRNFSNFILDKFLRHCESLRP---G-- 246 (507)
T ss_dssp CCCCTTCHHHHHHTSCHHHHHHHHSTTCCTTTCGGGGGSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT---T--
T ss_pred ccCCCCCHHHHHHHHHHHHHHHhcccchHHHHhHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---c--
Confidence 9987543 222 23344444444445567789887662 112234666777888889999999998886543 1
Q ss_pred CCCCcHHHHhhc
Q 048376 209 GDDEDLVDVLLK 220 (221)
Q Consensus 209 ~~~~d~ld~ll~ 220 (221)
..+.|+++.|+.
T Consensus 247 ~~~~d~l~~ll~ 258 (507)
T 3pm0_A 247 AAPRDMMDAFIL 258 (507)
T ss_dssp CCCCSHHHHHHH
T ss_pred cCCccHHHHHHH
Confidence 246899998873
No 3
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=99.95 E-value=8.6e-27 Score=196.93 Aligned_cols=207 Identities=24% Similarity=0.370 Sum_probs=148.6
Q ss_pred CCCCcccccccccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCCCc
Q 048376 1 PWKLPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNYRD 80 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~~~ 80 (221)
|+++|+|||++++..+.++..+.+|+++||+||++++|++++|+|+||++|+++|.+++..|++||..+....+. ++ +
T Consensus 15 P~~~PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~~~~v~~il~~~~~~f~~r~~~~~~~~~~-~~-~ 92 (476)
T 3e6i_A 15 PFPLPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEALLDYKDEFSGRGDLPAFHAHR-DR-G 92 (476)
T ss_dssp CCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTSTTTTCEECCCGGGGGGT-TS-S
T ss_pred CCCcccccChhhhccccHhHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcchHhhCCCCCCchhheec-CC-C
Confidence 667999999999855677899999999999999999999999999999999999999999999999765555543 22 6
Q ss_pred eeeCCCChHHHHHHHHHHHhhcCHH---------HHHH-hHHHHHH------------HHHHHHHHHHHHHHHhCCCCCC
Q 048376 81 IVFSPYGDSWKQLRKICVSELLSAK---------RVQS-FQSIREK------------SKIYSLMYGITSRAAFGNRSRD 138 (221)
Q Consensus 81 ~~~~~~g~~Wk~~Rr~~~~~~~~~~---------~~~~-~~~i~~~------------~~~~~~~~~vi~~~~fG~~~~~ 138 (221)
++++ +|+.|+++||++...+ ... .+.. ...+.+. ..+..++++||+.++||.+++.
T Consensus 93 l~~~-~g~~w~~~Rr~~~~~l-~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~d~~~~~~~~~~dvi~~~~fG~~~~~ 170 (476)
T 3e6i_A 93 IIFN-NGPTWKDIRRFSLTTL-RNYGMGKQGNESRIQREAHFLLEALRKTQGQPFDPTFLIGCAPCNVIADILFRKHFDY 170 (476)
T ss_dssp STTC-CSTTHHHHHHHHHHHH-HHTC-CCSHHHHHHHHHHHHHHHHHHTTTTSCBCTHHHHTHHHHHHHHHHHHSCCCCT
T ss_pred EEec-CCcHHHHHHHHHHHHH-HhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCcChHHHHHHHHHHHHHHHHcCCCCCC
Confidence 5555 6999999999865433 211 1111 1111111 6788899999999999999875
Q ss_pred hh-HHH---HHHHHHHHHcCCC--ccccccc-cccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCC
Q 048376 139 QE-AFA---SVRGEITKLMSGF--NIADMFP-SVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDD 211 (221)
Q Consensus 139 ~~-~~~---~~~~~~~~~~~~~--~~~~~~P-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 211 (221)
.+ .+. ..+...+...... .+.+.+| +++++ ++..++..+..+.+.+++.+.|+++++..+. + .+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l---p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~---~~ 241 (476)
T 3e6i_A 171 NDEKFLRLMYLFNENFHLLSTPWLQLYNNFPSFLHYL---PGSHRKVIKNVAEVKEYVSERVKEHHQSLDP---N---CP 241 (476)
T ss_dssp TCHHHHHHHHHHHHHHHHTTSHHHHHHHHSHHHHTTS---CSHHHHHHHHHHHHHHHHHHHHHHHHHTCCT---T---SC
T ss_pred CCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHc---CcHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---C---CC
Confidence 43 333 3333333332221 2345566 44433 3445667778888999999999999887543 2 46
Q ss_pred CcHHHHhhc
Q 048376 212 EDLVDVLLK 220 (221)
Q Consensus 212 ~d~ld~ll~ 220 (221)
+|++|.||.
T Consensus 242 ~d~~~~ll~ 250 (476)
T 3e6i_A 242 RDLTDCLLV 250 (476)
T ss_dssp CSHHHHHHH
T ss_pred ccHHHHHHH
Confidence 799998874
No 4
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=99.95 E-value=1.4e-26 Score=195.70 Aligned_cols=211 Identities=20% Similarity=0.371 Sum_probs=143.2
Q ss_pred CCCCcccccccccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcC--C
Q 048376 1 PWKLPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYN--Y 78 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~--~ 78 (221)
|+|+|||||++++..++++..+.+|+++|||||++++|++++|||+||++|+|+|++++..|++||..+....+..+ +
T Consensus 15 P~~lP~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~i~~vl~~~~~~f~~r~~~~~~~~~~~~~~~ 94 (479)
T 3tbg_A 15 PLPLPGLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQILGFGPRS 94 (479)
T ss_dssp SCCBTTTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEETTEEEEEEEHHHHHHHHHTTTGGGSCBCCCCGGGGGGTCBTTB
T ss_pred CCCcCcccchHhhcCCCHHHHHHHHHHHhCCEEEEEECCeeEEEECCHHHHHHHHHhCChhhcCCCchHHHHHhccCCCC
Confidence 56799999999986667889999999999999999999999999999999999999999999999987666655432 3
Q ss_pred CceeeCCCChHHHHHHHHHHHhhcCHH----HHHHhHH-----HHHH------------HHHHHHHHHHHHHHHhCCCCC
Q 048376 79 RDIVFSPYGDSWKQLRKICVSELLSAK----RVQSFQS-----IREK------------SKIYSLMYGITSRAAFGNRSR 137 (221)
Q Consensus 79 ~~~~~~~~g~~Wk~~Rr~~~~~~~~~~----~~~~~~~-----i~~~------------~~~~~~~~~vi~~~~fG~~~~ 137 (221)
.+++++.+|+.|+++|+++.+.+.... .++.... +... ..+..++.++++.++||.+++
T Consensus 95 ~~~~~~~~g~~w~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~~ 174 (479)
T 3tbg_A 95 QGVFLARYGPAWREQRRFSVSTLRNLGLGKKSLEQWVTEEAACLCAAFANHSGRPFRPNGLLDKAVSNVIASLTCGRRFE 174 (479)
T ss_dssp CCSTTCCSSHHHHHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHHHHHHTTTTCCBCTHHHHHHHHHHHHHHHHHSCCCC
T ss_pred CceeeCCCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHhhcCCccc
Confidence 456677789999999999764432111 1111110 1110 678899999999999999998
Q ss_pred Chh-HHHHHH---HHHHHHcCCC--ccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCC
Q 048376 138 DQE-AFASVR---GEITKLMSGF--NIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDD 211 (221)
Q Consensus 138 ~~~-~~~~~~---~~~~~~~~~~--~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 211 (221)
..+ ...... .......... .....+|+..++ .....+.....+...+.+.+.++++.+..+. . ...
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~ 246 (479)
T 3tbg_A 175 YDDPRFLRLLDLAQEGLKEESGFLREVLNAVPVLLHI---PALAGKVLRFQKAFLTQLDELLTEHRMTWDP---A--QPP 246 (479)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSSHHHHHHHHSGGGGGS---HHHHHHHTHHHHHHHHHHHHHHHHHHHHCCT---T--SCC
T ss_pred ccchhhhhhhhhhhhhhhhhhhhhhhhhcccchhccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc---c--ccc
Confidence 654 222222 2222211111 112233433322 2233455556666777778878777766543 2 245
Q ss_pred CcHHHHhh
Q 048376 212 EDLVDVLL 219 (221)
Q Consensus 212 ~d~ld~ll 219 (221)
+|++|.++
T Consensus 247 ~d~~~~~~ 254 (479)
T 3tbg_A 247 RDLTEAFL 254 (479)
T ss_dssp CSHHHHHH
T ss_pred chhhhhhh
Confidence 77777654
No 5
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens}
Probab=99.95 E-value=1.1e-26 Score=197.73 Aligned_cols=209 Identities=20% Similarity=0.417 Sum_probs=149.1
Q ss_pred CCCCcccccccccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCCCc
Q 048376 1 PWKLPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNYRD 80 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~~~ 80 (221)
|+++|++||++++ ..+++..+.+|.++|||||++++|+.++|+|+||++++++|.++++.|++||..+....+. ++.+
T Consensus 21 P~~~p~~G~~~~~-~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~i~~il~~~~~~f~~r~~~~~~~~~~-~~~~ 98 (495)
T 2hi4_A 21 PWGWPLLGHVLTL-GKNPHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALVRQGDDFKGRPDLYTSTLIT-DGQS 98 (495)
T ss_dssp CCCBTTTBTHHHH-TTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTGGGSCBCCCCHHHHTST-TSCC
T ss_pred CCCCcceeeHHhc-CccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhcchhhCCCCCcHHHHHhc-CCCC
Confidence 5679999999998 5677889999999999999999999999999999999999999888999998754443332 2456
Q ss_pred eeeC-CCChHHHHHHHHHHHhh--cCHHHH---H---HhHH------------HHH--H--------HHHHHHHHHHHHH
Q 048376 81 IVFS-PYGDSWKQLRKICVSEL--LSAKRV---Q---SFQS------------IRE--K--------SKIYSLMYGITSR 129 (221)
Q Consensus 81 ~~~~-~~g~~Wk~~Rr~~~~~~--~~~~~~---~---~~~~------------i~~--~--------~~~~~~~~~vi~~ 129 (221)
++++ ++|+.|+++||++.+.+ ++.... + .+.+ +.+ . ..+..++.+||++
T Consensus 99 l~~~~~~g~~w~~~Rr~~~~~f~~~s~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~d~~~~~~~~~~dvi~~ 178 (495)
T 2hi4_A 99 LTFSTDSGPVWAARRRLAQNALNTFSIASDPASSSSCYLEEHVSKEAKALISRLQELMAGPGHFDPYNQVVVSVANVIGA 178 (495)
T ss_dssp TTTSSCCSHHHHHHHHHHHHHHHHTTTSBCSSCSSCBHHHHHHHHHHHHHHHHHHHHHHTTSCBCHHHHHHHHHHHHHHH
T ss_pred EEEcCCCChHHHHHHHHHHHHHHHhccCcccccchhhhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHH
Confidence 6665 57999999999976432 221111 0 1111 111 0 5678899999999
Q ss_pred HHhCCCCCChh-HHHHH---HHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 048376 130 AAFGNRSRDQE-AFASV---RGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKI 205 (221)
Q Consensus 130 ~~fG~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 205 (221)
++||.+++.++ .+... +..+........+.+++|++++++ .+..++..+..+.+.+++.+.|+++++..++
T Consensus 179 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~lp--~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~--- 253 (495)
T 2hi4_A 179 MCFGQHFPESSDEMLSLVKNTHEFVETASSGNPLDFFPILRYLP--NPALQRFKAFNQRFLWFLQKTVQEHYQDFDK--- 253 (495)
T ss_dssp HHHGGGSCTTCHHHHHHHTTTHHHHTTSSTTCGGGTCGGGGGSC--CHHHHHHHHHHHHHHHHHHHHHHHHHHTCCT---
T ss_pred HHcCCCCCCCCHHHHHHHHHHHHHHHhcccchHHHHhHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---
Confidence 99999886433 33332 233333322223566788876542 2234566777888999999999999876543
Q ss_pred ccCCCCCcHHHHhh
Q 048376 206 CKIGDDEDLVDVLL 219 (221)
Q Consensus 206 ~~~~~~~d~ld~ll 219 (221)
+ .+.|+++.|+
T Consensus 254 ~---~~~d~l~~ll 264 (495)
T 2hi4_A 254 N---SVRDITGALF 264 (495)
T ss_dssp T---CCCSHHHHHH
T ss_pred c---ccccHHHHHH
Confidence 2 4589999887
No 6
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Probab=99.94 E-value=2.2e-26 Score=195.20 Aligned_cols=210 Identities=25% Similarity=0.417 Sum_probs=149.1
Q ss_pred CCCCcccccccccCCCC--ccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCC
Q 048376 1 PWKLPLIGNLHQLAGSL--PHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNY 78 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~--~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~ 78 (221)
|+++|++||++++.... ++..+.+|.++||||+++++|+.++|+|+||++++++|.++++.|++||..+....+. ++
T Consensus 17 P~~~p~~G~~~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~vl~~~~~~f~~~~~~~~~~~~~-~~ 95 (481)
T 3czh_A 17 PPGLPFIGNIYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPLFMKMT-KM 95 (481)
T ss_dssp CCCBTTTBHHHHHHHCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEEESHHHHHHHHTTTTTTTCBCCCCHHHHHHH-TT
T ss_pred CCCCcccccHhhcCcccCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhhchHhhCCCCCcHHHHhhc-CC
Confidence 56799999999884333 7889999999999999999999999999999999999999888999998654444443 23
Q ss_pred CceeeCCCChHHHHHHHHHHHhhcCHHHH--HHhHHHHHH--------------------HHHHHHHHHHHHHHHhCCCC
Q 048376 79 RDIVFSPYGDSWKQLRKICVSELLSAKRV--QSFQSIREK--------------------SKIYSLMYGITSRAAFGNRS 136 (221)
Q Consensus 79 ~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~--~~~~~i~~~--------------------~~~~~~~~~vi~~~~fG~~~ 136 (221)
.++++..+|+.|+++||++.+ .|+...+ ..+.+.+++ ..+.+++.++|++++||.++
T Consensus 96 ~~~~~~~~g~~w~~~R~~~~~-~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~ 174 (481)
T 3czh_A 96 GGLLNSRYGRGWVDHRRLAVN-SFRYFGYGQKSFESKILEETKFFNDAIETYKGRPFDFKQLITNAVSNITNLIIFGERF 174 (481)
T ss_dssp CSSTTCCSSHHHHHHHHHHHH-HHHHTTTTSTTHHHHHHHHHHHHHHHHHTTTTCCBCCHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCeEeCCCChHHHHHHHHHHH-HHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHcCCCC
Confidence 455555679999999999754 4432111 122221111 67888999999999999988
Q ss_pred CChh-HH---HHHHHHHHHHcCCCc--cccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCC
Q 048376 137 RDQE-AF---ASVRGEITKLMSGFN--IADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGD 210 (221)
Q Consensus 137 ~~~~-~~---~~~~~~~~~~~~~~~--~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 210 (221)
+.++ .+ .+.+...+....... +.+++|++++++ .+..++..+..+.+.+++.+.|+++++..++ . .
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~lp--~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~---~---~ 246 (481)
T 3czh_A 175 TYEDTDFQHMIELFSENVELAASASVFLYNAFPWIGILP--FGKHQQLFRNAAVVYDFLSRLIEKASVNRKP---Q---L 246 (481)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTTSHHHHHHHHCGGGGGCS--SSHHHHHHHHHHHHHHHHHHHHHHHHTTCCT---T---C
T ss_pred CCCCHHHHHHHHHHHHHHhhhccchhHHhhhhHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---C---c
Confidence 6432 33 233334443322211 456778876542 1334566777888899999999999876433 2 4
Q ss_pred CCcHHHHhhc
Q 048376 211 DEDLVDVLLK 220 (221)
Q Consensus 211 ~~d~ld~ll~ 220 (221)
++|+++.||+
T Consensus 247 ~~d~l~~ll~ 256 (481)
T 3czh_A 247 PQHFVDAYLD 256 (481)
T ss_dssp CSSHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 6799998874
No 7
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=99.94 E-value=1.1e-25 Score=190.46 Aligned_cols=207 Identities=20% Similarity=0.376 Sum_probs=146.1
Q ss_pred CCCCcccccccccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCCCc
Q 048376 1 PWKLPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNYRD 80 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~~~ 80 (221)
|+++|++||++++...+++..+.+|.++||||+++++|+.++|+|+||++++++|+++++.|++||..+....+. .+.+
T Consensus 15 P~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~~~~-~~~~ 93 (476)
T 1po5_A 15 PSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVDPIF-QGYG 93 (476)
T ss_dssp SCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCGGGGCSCC-SSCC
T ss_pred CCCCCccccHHhccCCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCCcHHHHhhc-CCCc
Confidence 567999999999844567889999999999999999999999999999999999998888999988644333322 2346
Q ss_pred eeeCCCChHHHHHHHHHHHhhcCHH--HHHHhHHHHHH--------------------HHHHHHHHHHHHHHHhCCCCCC
Q 048376 81 IVFSPYGDSWKQLRKICVSELLSAK--RVQSFQSIREK--------------------SKIYSLMYGITSRAAFGNRSRD 138 (221)
Q Consensus 81 ~~~~~~g~~Wk~~Rr~~~~~~~~~~--~~~~~~~i~~~--------------------~~~~~~~~~vi~~~~fG~~~~~ 138 (221)
++++ +|+.|+++||++. +.|+.. .++.+.+.+.+ +.+..++++||++++||.+++.
T Consensus 94 l~~~-~g~~w~~~Rr~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~~~ 171 (476)
T 1po5_A 94 VIFA-NGERWRALRRFSL-ATMRDFGMGKRSVEERIQEEARCLVEELRKSKGALLDNTLLFHSITSNIICSIVFGKRFDY 171 (476)
T ss_dssp CCCS-SHHHHHHHHHHHH-HHHHHSCCCHHHHHHHHHHHHHHHHHHHHHTTTCCBCCHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred eEec-CCcHHHHHHHHHH-HHHHHhCCChhHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 6555 7999999999865 344322 12222222111 6788999999999999998864
Q ss_pred hh-HHHHHHHHHHHHcCC---C--cccccccc-ccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCC
Q 048376 139 QE-AFASVRGEITKLMSG---F--NIADMFPS-VGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDD 211 (221)
Q Consensus 139 ~~-~~~~~~~~~~~~~~~---~--~~~~~~P~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 211 (221)
++ .+....+.+...... . .+.+++|+ +++ ++...++..+..+.+.+++.+.|++++++.++ + .+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~---lp~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~---~---~~ 242 (476)
T 1po5_A 172 KDPVFLRLLDLFFQSFSLISSFSSQVFELFSGFLKH---FPGTHRQIYRNLQEINTFIGQSVEKHRATLDP---S---NP 242 (476)
T ss_dssp TCHHHHHHHHHHHHHTTTCCTTHHHHHHHTHHHHHT---SSCSHHHHHHHHHHHHHHHHHHHHHHHTTCCT---T---SC
T ss_pred CCHHHHHHHHHHHHHHhhhcchhhHHHHhhhHHHHh---cCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---C---Cc
Confidence 43 344444333333211 1 12345665 332 23334566777888999999999999876433 2 45
Q ss_pred CcHHHHhh
Q 048376 212 EDLVDVLL 219 (221)
Q Consensus 212 ~d~ld~ll 219 (221)
+|++|.||
T Consensus 243 ~d~l~~ll 250 (476)
T 1po5_A 243 RDFIDVYL 250 (476)
T ss_dssp CSHHHHHH
T ss_pred ccHHHHHH
Confidence 79999887
No 8
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3tik_A* 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Probab=99.94 E-value=2.1e-26 Score=193.22 Aligned_cols=206 Identities=16% Similarity=0.252 Sum_probs=152.8
Q ss_pred CCcccccccccCCCCccHHHHHHHhhcC-CceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCCCce
Q 048376 3 KLPLIGNLHQLAGSLPHHRLRDLTNKYG-PLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNYRDI 81 (221)
Q Consensus 3 ~~PiiGnl~~l~~~~~~~~~~~~~~~YG-~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~~~~ 81 (221)
++|+|||++++ ..+++..+.+|+++|| +||++++|+.++|||+||+++++++.++++.|++|+.......+. +.++
T Consensus 11 ~~P~iG~~~~~-~~~~~~~~~~~~~~yG~~i~~~~~~~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~~~~~~--g~~~ 87 (450)
T 3gw9_A 11 TVPILGHIIQF-GKSPLGFMQECKRQLKSGIFTINIVGKRVTIVGDPHEHSRFFLPRNEVLSPREVYSFMVPVF--GEGV 87 (450)
T ss_dssp CSTTTBTHHHH-HHCHHHHHHHHHHHHTCSEEEEEETTEEEEEECCGGGTHHHHSSCTTTEESTGGGGGGHHHH--CTTS
T ss_pred CcchhccHHHH-ccCHHHHHHHHHHHhCCCeEEEEECCEeEEEEeCHHHHHHHHhCChhhccchhhHHHHHHHh--cCCc
Confidence 39999999998 5678889999999999 999999999999999999999999999999999998644443432 4566
Q ss_pred eeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH--------------------HHHHHHHHHHHHHHHhCCCCCC---
Q 048376 82 VFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK--------------------SKIYSLMYGITSRAAFGNRSRD--- 138 (221)
Q Consensus 82 ~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~--------------------~~~~~~~~~vi~~~~fG~~~~~--- 138 (221)
++..+|+.|+++||++ .+.|+...++.+.+.+++ +.+..++.++|++++||.+++.
T Consensus 88 ~~~~~~~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~ll~~~~~~~~~~vd~~~~~~~~~~~~i~~~~fG~~~~~~~~ 166 (450)
T 3gw9_A 88 AYAAPYPRMREQLNFL-AEELTIAKFQNFVPAIQHEVRKFMAANWDKDEGEINLLEDCSTMIINTACQCLFGEDLRKRLD 166 (450)
T ss_dssp GGGSCHHHHHHHHHHH-HHTTSGGGCTTHHHHHHHHHHHHHHHHSCSSEEEEEHHHHHHHHHHHHHHHHHSCHHHHHHSC
T ss_pred ccCCCcHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHcCcchhhhhh
Confidence 6666799999999996 467776655554433322 6788999999999999987753
Q ss_pred hhHHHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHh
Q 048376 139 QEAFASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVL 218 (221)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~l 218 (221)
...+...+..+... ......++|++++++ .+..++..+..+.+.+++.+.++++++.... ......|+++.|
T Consensus 167 ~~~~~~~~~~~~~~--~~~~~~~~P~l~~lp--~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~----~~~~~~d~l~~l 238 (450)
T 3gw9_A 167 ARRFAQLLAKMESS--LIPAAVFLPILLKLP--LPQSARCHEARTELQKILSEIIIARKEEEVN----KDSSTSDLLSGL 238 (450)
T ss_dssp HHHHHHHHHHHHHT--CCGGGGTCGGGGGSC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TSCCCCSHHHHH
T ss_pred hHHHHHHHHHHHhc--cccchhcccchhccC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhcc----cCCccchHHHHH
Confidence 22444444443222 223455778887652 2334566778888999999999998865422 112468999998
Q ss_pred hc
Q 048376 219 LK 220 (221)
Q Consensus 219 l~ 220 (221)
++
T Consensus 239 l~ 240 (450)
T 3gw9_A 239 LS 240 (450)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 9
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Probab=99.94 E-value=1.1e-25 Score=190.53 Aligned_cols=208 Identities=21% Similarity=0.335 Sum_probs=147.5
Q ss_pred CCCCcccccccccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCCCc
Q 048376 1 PWKLPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNYRD 80 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~~~ 80 (221)
|+++|++||++++...+++..+.+|.++||||+++++|+.++|+|+||++++++|++++..|++||..+...... .+.+
T Consensus 15 P~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~~~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~~~~-~~~~ 93 (476)
T 2fdv_A 15 PTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEEFSGRGEQATFDWVF-KGYG 93 (476)
T ss_dssp CCCBTTTBTGGGCCTTBHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCCHHHHHHH-TTCS
T ss_pred CCCCcccccHhhcCCcchHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcChHhhCCCCCcHHHhhhc-CCCC
Confidence 567999999999844677889999999999999999999999999999999999998888999998654444333 2456
Q ss_pred eeeCCCChHHHHHHHHHHHhhcCHHHH--HHhHHHHHH--------------------HHHHHHHHHHHHHHHhCCCCCC
Q 048376 81 IVFSPYGDSWKQLRKICVSELLSAKRV--QSFQSIREK--------------------SKIYSLMYGITSRAAFGNRSRD 138 (221)
Q Consensus 81 ~~~~~~g~~Wk~~Rr~~~~~~~~~~~~--~~~~~i~~~--------------------~~~~~~~~~vi~~~~fG~~~~~ 138 (221)
++++ +|+.|+++||++. +.|+...+ +.+.+.+.+ +.+..++++||++++||.+++.
T Consensus 94 l~~~-~g~~~~~~Rr~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~vd~~~~~~~~~~~vi~~~~fG~~~~~ 171 (476)
T 2fdv_A 94 VVFS-NGERAKQLRRFSI-ATLRDFGVGKRGIEERIQEEAGFLIDALRGTGGANIDPTFFLSRTVSNVISSIVFGDRFDY 171 (476)
T ss_dssp SSSC-CHHHHHHHHHHHH-HHHHHTTTTSHHHHHHHHHHHHHHHHHHHHTTTCCBCCHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred eEec-CchHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHHHHHHHHcCCcCCC
Confidence 6655 6999999999975 44543222 222222211 6788999999999999998864
Q ss_pred hh-H---HHHHHHHHHHHcCCC--cccccccc-ccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCC
Q 048376 139 QE-A---FASVRGEITKLMSGF--NIADMFPS-VGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDD 211 (221)
Q Consensus 139 ~~-~---~~~~~~~~~~~~~~~--~~~~~~P~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 211 (221)
++ . +...+...+...... .+.+++|+ ++++ ++..++..+..+.+.+++.+.|++++++.++ + .+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l---~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~---~---~~ 242 (476)
T 2fdv_A 172 KDKEFLSLLRMMLGIFQFTSTSTGQLYEMFSSVMKHL---PGPQQQAFQLLQGLEDFIAKKVEHNQRTLDP---N---SP 242 (476)
T ss_dssp TCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTTS---CSHHHHHHHHHHHHHHHHHHHHHHHHTTCCT---T---SC
T ss_pred CCHHHHHHHHHHHHHHHhhcccccchhhhhhhHHHhc---CcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---C---CC
Confidence 33 2 223333333322211 13446676 4433 3344566777888999999999998876433 2 46
Q ss_pred CcHHHHhhc
Q 048376 212 EDLVDVLLK 220 (221)
Q Consensus 212 ~d~ld~ll~ 220 (221)
.|+++.||.
T Consensus 243 ~d~l~~ll~ 251 (476)
T 2fdv_A 243 RDFIDSFLI 251 (476)
T ss_dssp CSHHHHHHH
T ss_pred ccHHHHHHH
Confidence 899998874
No 10
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A*
Probab=99.94 E-value=2.2e-26 Score=194.94 Aligned_cols=132 Identities=21% Similarity=0.365 Sum_probs=109.7
Q ss_pred CCCCcccccccccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhC-CCccCCCCCCchhhhhhcCCC
Q 048376 1 PWKLPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTH-DVVFASRPHFPPAQIISYNYR 79 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~-~~~f~~Rp~~~~~~~~~~~~~ 79 (221)
|+++|+|||++++ .+.++..+.+|.++||+||++++|++++|+|+||++|+++|.++ .+.|++|+........ +.
T Consensus 19 P~~~PliGn~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~~f~~r~~~~~~~~~---~~ 94 (485)
T 3nxu_A 19 PTPLPFLGNILSY-HKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPVGFM---KS 94 (485)
T ss_dssp CCCBTTTBTGGGG-GGCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTTTTTTTCCCCCCCSCCGGG---GG
T ss_pred CCCcCeecCcHHh-hcChHHHHHHHHHHcCCeEEEEeCCCCEEEECCHHHHHHHHhccchhhccCCccccccccc---cc
Confidence 6789999999999 56778889999999999999999999999999999999999988 7889999865443322 34
Q ss_pred ceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH----------------------HHHHHHHHHHHHHHHhCCCCC
Q 048376 80 DIVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK----------------------SKIYSLMYGITSRAAFGNRSR 137 (221)
Q Consensus 80 ~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~----------------------~~~~~~~~~vi~~~~fG~~~~ 137 (221)
++++ .+|+.|+++||++ .+.|+.+.++.+.+++++ +.+..+++++|+.++||.+++
T Consensus 95 ~l~~-~~g~~w~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~g~~~d~~~~~~~~~~dvi~~~~fG~~~~ 172 (485)
T 3nxu_A 95 AISI-AEDEEWKRLRSLL-SPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTSFGVNID 172 (485)
T ss_dssp STTT-CCHHHHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred Cccc-cCCcHHHHHHhhc-ChhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCcHHHHHHHHHHHHHHHHHcCCccc
Confidence 5444 4699999999997 578898887776554433 567889999999999999987
Q ss_pred C
Q 048376 138 D 138 (221)
Q Consensus 138 ~ 138 (221)
.
T Consensus 173 ~ 173 (485)
T 3nxu_A 173 S 173 (485)
T ss_dssp G
T ss_pred c
Confidence 4
No 11
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=99.93 E-value=4.4e-25 Score=186.64 Aligned_cols=206 Identities=16% Similarity=0.226 Sum_probs=142.9
Q ss_pred CCCCcccccccccCC----CCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchh---hh
Q 048376 1 PWKLPLIGNLHQLAG----SLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPA---QI 73 (221)
Q Consensus 1 P~~~PiiGnl~~l~~----~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~---~~ 73 (221)
|+++|++||++++.. +.++..+.+|.++||+|+++++|+.++|+|+||+++++++.++ ..|++||..... ..
T Consensus 29 P~~~p~iG~~~~~~~~~~~~~~~~~~~~l~~~YG~i~~~~~g~~~~vvv~dp~~~~~il~~~-~~~~~r~~~~~~~~~~~ 107 (482)
T 3k9v_A 29 PTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEALYRTE-SAHPQRLEIKPWKAYRD 107 (482)
T ss_dssp SCCCTTTBTHHHHHHTTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTC-CSSCCCCCCHHHHHHHH
T ss_pred CCCCCccccHHHHhccCCcccHHHHHHHHHHHcCCEEEEccCCCCEEEEcCHHHHHHHHHhc-CCCCCCCCchHHHHHHH
Confidence 677999999998732 3567899999999999999999999999999999999999974 589999864322 22
Q ss_pred hhcCCCceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH-----------------------HHHHHHHHHHHHHH
Q 048376 74 ISYNYRDIVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK-----------------------SKIYSLMYGITSRA 130 (221)
Q Consensus 74 ~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~-----------------------~~~~~~~~~vi~~~ 130 (221)
....+.++++. +|+.|+++||++.+.+++.+.++.+.+.+++ +.+..+++++|+++
T Consensus 108 ~~~~~~~l~~~-~g~~w~~~Rr~~~~~f~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~g~~vd~~~~~~~~t~dvi~~~ 186 (482)
T 3k9v_A 108 HRNEAYGLMIL-EGQEWQRVRSAFQKKLMKPVEIMKLDKKINEVLADFLERMDELCDERGRIPDLYSELNKWSFESICLV 186 (482)
T ss_dssp HHTCCCCTTTC-CHHHHHHHHHHHHHHHTCHHHHGGGHHHHHHHHHHHHHHHHHHCCTTSCCTTHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCceeC-CCchHHHHHHHhhHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence 22224455544 6999999999987666677666655443332 56889999999999
Q ss_pred HhCCCCCC--------hhHHHHHHHHHHHHcCCCccccccc--cccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048376 131 AFGNRSRD--------QEAFASVRGEITKLMSGFNIADMFP--SVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRK 200 (221)
Q Consensus 131 ~fG~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~P--~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 200 (221)
+||.++.. .+.+.+.+..++.... ...++| +++++ .....++..+..+.+.+++.+.|++++++.
T Consensus 187 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~ 261 (482)
T 3k9v_A 187 LYEKRFGLLQKETEEEALTFITAIKTMMSTFG---KMMVTPVELHKRL--NTKVWQAHTLAWDTIFKSVKPCIDNRLQRY 261 (482)
T ss_dssp HHSCCCCSSSTTSTTSSHHHHHHHHHHHTTGG---GGSSSCHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HcccccCCCCCCcchHHHHHHHHHHHHHHHHH---HHHhhhHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998832 1245555544433222 123344 12222 112234555666778888888999988765
Q ss_pred hhhhhccCCCCCcHHHHhh
Q 048376 201 ATLKICKIGDDEDLVDVLL 219 (221)
Q Consensus 201 ~~~~~~~~~~~~d~ld~ll 219 (221)
+. . ...|+++.++
T Consensus 262 ~~---~---~~~d~l~~ll 274 (482)
T 3k9v_A 262 SQ---Q---PGADFLCDIY 274 (482)
T ss_dssp TT---C---TTSCHHHHHH
T ss_pred cc---C---CchHHHHHHH
Confidence 33 2 3578887765
No 12
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Probab=99.93 E-value=1.7e-25 Score=189.43 Aligned_cols=208 Identities=23% Similarity=0.370 Sum_probs=136.0
Q ss_pred CCCCcccccccccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCCCc
Q 048376 1 PWKLPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNYRD 80 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~~~ 80 (221)
|+++|++||++++...+++..+.+|.++||+|+++++|+.++|+|+||++++++|+++++.|++||..+...... .+.+
T Consensus 16 P~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~il~~~~~~f~~~~~~~~~~~~~-~~~~ 94 (477)
T 1r9o_A 16 PTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGIFPLAERAN-RGFG 94 (477)
T ss_dssp SSSCC-----CCBCHHHHHHHHHHHHHHHCSEEEEESSSCEEEEECSHHHHHHHHTTTTTTTCEECCCSCCCTTT-CTTS
T ss_pred CCCCceeccHhhcCCCChHHHHHHHHHHhCCEEEEEECCCcEEEECCHHHHHHHHhcccHhhCCCCcchhhhhcc-CCCc
Confidence 567999999999833467889999999999999999999999999999999999998888999998644333332 2346
Q ss_pred eeeCCCChHHHHHHHHHHHhhcCHH--HHHHhHHHHHH--------------------HHHHHHHHHHHHHHHhCCCCCC
Q 048376 81 IVFSPYGDSWKQLRKICVSELLSAK--RVQSFQSIREK--------------------SKIYSLMYGITSRAAFGNRSRD 138 (221)
Q Consensus 81 ~~~~~~g~~Wk~~Rr~~~~~~~~~~--~~~~~~~i~~~--------------------~~~~~~~~~vi~~~~fG~~~~~ 138 (221)
++++ +|+.|+++||++.+. |+.. .++.+.+.+.+ +.+..++++||++++||.+++.
T Consensus 95 l~~~-~g~~w~~~Rr~~~~~-~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~vd~~~~~~~~~~~vi~~~~fG~~~~~ 172 (477)
T 1r9o_A 95 IVFS-NGKKWKEIRRFSLMT-LRNFGMGKRSIEDRVQEEARCLVEELRKTKASPCDPTFILGCAPCNVICSIIFHKRFDY 172 (477)
T ss_dssp STTC-CHHHHHHHHHHHHHH-HTTSSSCSSCHHHHHHHHHHHHHHHHHTTTTSCBCTHHHHHHHHHHHHHHHHHSCCCCT
T ss_pred eEec-CChHHHHHHHHHHHH-HHHhCCChHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHHHHHHHHccCcCCC
Confidence 5555 799999999987544 4322 11111111111 6788999999999999998864
Q ss_pred hh-HHHHH---HHHHHHHcCC--Ccccccccc-ccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCC
Q 048376 139 QE-AFASV---RGEITKLMSG--FNIADMFPS-VGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDD 211 (221)
Q Consensus 139 ~~-~~~~~---~~~~~~~~~~--~~~~~~~P~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 211 (221)
++ .+... +...+..... ..+.+++|+ ++++ +...++..+..+.+.+++.+.|+++++..++ . .+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l---p~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~---~---~~ 243 (477)
T 1r9o_A 173 KDQQFLNLMEKLNENIKILSSPWIQICNNFSPIIDYF---PGTHNKLLKNVAFMKSYILEKVKEHQESMDM---N---NP 243 (477)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCCBC-------CCCSCC---TTCHHHHHHHHHHHHHHHHHHHHHHHHTCCT---T---CC
T ss_pred CCHHHHHHHHHHHHHHHhhccchhHHHhhccHHHHhc---chHHHHHHHHHHHHHHHHHHHHHHHHhccCC---C---Cc
Confidence 33 33333 2333322121 133456776 3332 3333566677788899999999999876433 2 46
Q ss_pred CcHHHHhhc
Q 048376 212 EDLVDVLLK 220 (221)
Q Consensus 212 ~d~ld~ll~ 220 (221)
.|++|.||.
T Consensus 244 ~d~l~~ll~ 252 (477)
T 1r9o_A 244 QDFIDCFLM 252 (477)
T ss_dssp CSHHHHHHH
T ss_pred hHHHHHHHH
Confidence 799998873
No 13
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus}
Probab=99.93 E-value=3e-26 Score=194.62 Aligned_cols=200 Identities=23% Similarity=0.347 Sum_probs=144.2
Q ss_pred ccccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCCCceeeCCCChH
Q 048376 10 LHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNYRDIVFSPYGDS 89 (221)
Q Consensus 10 l~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~ 89 (221)
++++..++++..+.+|.++||||+++++|+.++|||+||++++|+|.+++..|++||..+.......++.++++++||+.
T Consensus 37 l~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~~f~~r~~~~~~~~~~~~~~~l~~~~~g~~ 116 (496)
T 3qz1_A 37 FLHLLQPNLPIHLLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDFAGRPQIPSYKLVSQRCQDISLGDYSLL 116 (496)
T ss_dssp SCTTSSSCHHHHHHHGGGTSCSEEEECSSSSCEEEECSTTHHHHTTTTSCSTTCBCCCCTTTTTSCTTCCCSSSSCCSHH
T ss_pred ccccCCCcchHHHHHHHHHhCCEEEEEeCCcCEEEECCHHHHHHHHHhCcHhhCCCCCcchHHHhcCCCCceEECCCCHH
Confidence 67775667899999999999999999999999999999999999999999999999976554444333337777777999
Q ss_pred HHHHHHHHHHhhcCHHHHHHhHHHHHH--------------------HHHHHHHHHHHHHHHhCCCCCChhHH---HHHH
Q 048376 90 WKQLRKICVSELLSAKRVQSFQSIREK--------------------SKIYSLMYGITSRAAFGNRSRDQEAF---ASVR 146 (221)
Q Consensus 90 Wk~~Rr~~~~~~~~~~~~~~~~~i~~~--------------------~~~~~~~~~vi~~~~fG~~~~~~~~~---~~~~ 146 (221)
|+++||++.+ .|+.+.++.+.+++++ +.+..++++||++++||. ..+..+ .+.+
T Consensus 117 w~~~Rr~~~~-~f~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~vd~~~~~~~~~~dvi~~~~fG~--~~~~~~~~~~~~~ 193 (496)
T 3qz1_A 117 WKAHKKLTRS-ALLLGTRSSMEPWVDQLTQEFCERMRVQAGAPVTIQKEFSLLTCSIICYLTFGN--KEDTLVHAFHDCV 193 (496)
T ss_dssp HHHHHHHHHH-HHHC--CCCHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHTHHHHHHTTTTSTTC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHhhccHhhHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHHHhcCC--CCChHHHHHHHHH
Confidence 9999999764 4443333333332221 678889999999999998 222222 2222
Q ss_pred HHHHHHcCC--CccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 147 GEITKLMSG--FNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 147 ~~~~~~~~~--~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
...+..... ..+.+++|++++++ .+..+++.+..+.+.+++.+.++++++..+. + .++|++|.|++
T Consensus 194 ~~~~~~~~~~~~~~~~~~P~l~~lp--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~---~~~d~l~~ll~ 261 (496)
T 3qz1_A 194 QDLMKTWDHWSIQILDMVPFLRFFP--NPGLWRLKQAIENRDHMVEKQLRRHKESMVA---G---QWRDMTDYMLQ 261 (496)
T ss_dssp HTTTTTTSSHHHHHHHHCGGGCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS---S---CCSSSHHHHTT
T ss_pred HHHHHHhccchhHHHHhHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---C---CccchHHHHHH
Confidence 222222221 23456788877652 2345667788888999999999999887543 2 46899998875
No 14
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=99.93 E-value=1.1e-24 Score=185.40 Aligned_cols=208 Identities=18% Similarity=0.217 Sum_probs=142.5
Q ss_pred CCCCcccccccccCC---CCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchh-hhhhc
Q 048376 1 PWKLPLIGNLHQLAG---SLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPA-QIISY 76 (221)
Q Consensus 1 P~~~PiiGnl~~l~~---~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~-~~~~~ 76 (221)
|+++|++||++++.. ...+..+.+|+++|||||++++|+.++|||+||++++|+|.+ +.|++||..... .....
T Consensus 50 P~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~il~~--~~~~~r~~~~~~~~~~~~ 127 (503)
T 3s79_A 50 PGYCMGIGPLISHGRFLWMGIGSACNYYNRVYGEFMRVWISGEETLIISKSSSMFHIMKH--NHYSSRFGSKLGLQCIGM 127 (503)
T ss_dssp CCCCSSSHHHHHHHHHHHHCHHHHHHHHHHHSCSEEEEESSSSEEEEECCHHHHHHHHHS--GGGCCCCCCHHHHHHHTC
T ss_pred CCCCceeeehhccccccccchhHHHHHHHHHhCCeEEEEeCCccEEEECCHHHHHHHHhc--CCCCCcchhhhhhhhhcc
Confidence 678999999999732 133468899999999999999999999999999999999954 479999865332 22333
Q ss_pred CCCceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH----------------------HHHHHHHHHHHHHHHhCC
Q 048376 77 NYRDIVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK----------------------SKIYSLMYGITSRAAFGN 134 (221)
Q Consensus 77 ~~~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~----------------------~~~~~~~~~vi~~~~fG~ 134 (221)
.+.++++..+|+.|+++||++. +.|+...++.+.+.+.+ +.+..++.++|++++||.
T Consensus 128 ~~~~~~~~~~g~~w~~~Rr~~~-~~f~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~vdl~~~~~~~~~~vi~~~~fG~ 206 (503)
T 3s79_A 128 HEKGIIFNNNPELWKTTRPFFM-KALSGPGLVRMVTVCAESLKTHLDRLEEVTNESGYVDVLTLLRRVMLDTSNTLFLRI 206 (503)
T ss_dssp TTSSSTTCCCHHHHHHHHHHHH-HHTSTHHHHHHHHHHHHHHHHHHTTGGGTBCTTSCBCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCceeeCCCccHHHHHHHhhh-HhhChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHHHHHHHHHHcCc
Confidence 3457667778999999999975 66776666655443322 578899999999999999
Q ss_pred CCCChhHHHHHHHHHHHHcCC-CccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCc
Q 048376 135 RSRDQEAFASVRGEITKLMSG-FNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDED 213 (221)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d 213 (221)
+++.+ ++...+...+..... ....++++.+ +++ .++..+..+.+.+++.+.|+++++..+.+. ......|
T Consensus 207 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~d 277 (503)
T 3s79_A 207 PLDES-AIVVKIQGYFDAWQALLIKPDIFFKI---SWL---YKKYEKSVKDLKDAIEVLIAEKRRRISTEE--KLEECMD 277 (503)
T ss_dssp CCCHH-HHHHHHHHHHHHHHHHTTCCHHHHHS---GGG---THHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TTTTTCC
T ss_pred ccCch-hHHHHHHHHHHHHHHHhcCcHHHhhc---chh---HHHHHHHHHHHHHHHHHHHHHHHHHhhccc--ccchHHH
Confidence 98643 333333332222111 0001111111 121 245567788889999999999988765411 1113459
Q ss_pred HHHHhhc
Q 048376 214 LVDVLLK 220 (221)
Q Consensus 214 ~ld~ll~ 220 (221)
|++.|++
T Consensus 278 ~l~~ll~ 284 (503)
T 3s79_A 278 FATELIL 284 (503)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999874
No 15
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=99.92 E-value=2.1e-25 Score=188.11 Aligned_cols=201 Identities=16% Similarity=0.249 Sum_probs=145.3
Q ss_pred CCcccccccccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCCCcee
Q 048376 3 KLPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNYRDIV 82 (221)
Q Consensus 3 ~~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~~~~~ 82 (221)
++|||||++++ .++++..+.+|+++|||||++++|+.++|||+||+++++++.+++..|+.|+.......... +.+++
T Consensus 19 ~lP~iG~~~~~-~~~~~~~~~~~~~kYG~i~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~~~~~~-g~~~~ 96 (461)
T 3ld6_A 19 PIPFLGHAIAF-GKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTPVF-GKGVA 96 (461)
T ss_dssp SSTTTBTHHHH-HHCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHHHHHHH-CTTSG
T ss_pred CcCeeeeHHHh-hhCHHHHHHHHHHHhCCEEEEEECCccEEEEeCHHHHHHHHhCCccccCCCcchhhhhhccC-CCccc
Confidence 39999999999 67889999999999999999999999999999999999999999999999875332222112 45666
Q ss_pred eCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH------------------HHHHHHHHHHHHHHHhCCCCCC--hhHH
Q 048376 83 FSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK------------------SKIYSLMYGITSRAAFGNRSRD--QEAF 142 (221)
Q Consensus 83 ~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~------------------~~~~~~~~~vi~~~~fG~~~~~--~~~~ 142 (221)
+..+|+.|+++|+++ .+.|+...++.+..++++ +.+..++.++|+.++||.+++. ++.+
T Consensus 97 ~~~~~~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fG~~~~~~~~~~~ 175 (461)
T 3ld6_A 97 YDVPNPVFLEQKKML-KSGLNIAHFKQHVSIIEKETKEYFESWGESGEKNVFEALSELIILTASHCLHGKEIRSQLNEKV 175 (461)
T ss_dssp GGSCHHHHHHHHHHH-HHHSSHHHHHHHHHHHHHHHHHHGGGGCSEEEEEHHHHHHHHHHHHHHHHHTCHHHHHTCCHHH
T ss_pred cCCCcHHHHHHHHhc-cccccHHHHhhhhHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHHcCcchhhhhhhhh
Confidence 667899999999996 577888888777665544 6788999999999999987643 2233
Q ss_pred HHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 143 ASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
......+..... .....+|.+.. .+...+..+..+.+.+++.+.|++++++. ....|+++.|++
T Consensus 176 ~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~i~~r~~~~--------~~~~d~l~~ll~ 239 (461)
T 3ld6_A 176 AQLYADLDGGFS--HAAWLLPGWLP----LPSFRRRDRAHREIKDIFYKAIQKRRQSQ--------EKIDDILQTLLD 239 (461)
T ss_dssp HHHHHHHHTTSS--HHHHHSCTTSC----CHHHHHHHHHHHHHHHHHHHHHHHHTTCC--------CCCCSHHHHHHT
T ss_pred hhhhhhhhhhhh--hHHHhhhhhcc----CcHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCCcchhhhhHH
Confidence 233222221111 11222333221 12234556677888888888888876542 146899998875
No 16
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...
Probab=99.90 E-value=1.4e-22 Score=171.36 Aligned_cols=204 Identities=15% Similarity=0.183 Sum_probs=138.9
Q ss_pred CCCCcccccccccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhh-cCCC
Q 048376 1 PWKLPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIIS-YNYR 79 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~-~~~~ 79 (221)
|+++|++||++++....++..+.+|.++||||+++++|+.++|+|+||+++++++.+. .| .|+.......+. ..+.
T Consensus 8 P~~~p~iG~l~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~~~~~~~il~~~--~f-~~~~~~~~~~~~~~~~~ 84 (470)
T 2ij2_A 8 PKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDES--RF-DKNLSQALKFVRDFAGD 84 (470)
T ss_dssp CCCCGGGTTGGGGCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHTCTT--TE-EECCCHHHHHHHHHHTT
T ss_pred CCCCCccccHHHHhcccchHHHHHHHHHhCCeEEEecCCccEEEECCHHHHHHHHhhc--Cc-CcCchhHHHHHHHhcCC
Confidence 6689999999998545678899999999999999999999999999999999999642 46 443222222211 1134
Q ss_pred ceeeC-CCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH---------------------HHHHHHHHHHHHHHHhCCCCC
Q 048376 80 DIVFS-PYGDSWKQLRKICVSELLSAKRVQSFQSIREK---------------------SKIYSLMYGITSRAAFGNRSR 137 (221)
Q Consensus 80 ~~~~~-~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~---------------------~~~~~~~~~vi~~~~fG~~~~ 137 (221)
+++++ .+|+.|+++||++ .+.|+...++.+.+.+.+ ..+..++++||+.++||.+++
T Consensus 85 ~l~~~~~~g~~w~~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~vd~~~~~~~~~~~vi~~~~fG~~~~ 163 (470)
T 2ij2_A 85 GLFTSWTHEKNWKKAHNIL-LPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVPEDMTRLTLDTIGLCGFNYRFN 163 (470)
T ss_dssp SGGGSCTTSHHHHHHHHHH-GGGGSTTTHHHHHHHHHHHHHHHHHHHHTCCTTCCEEHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred ceEEcCCCchHHHHHHHHh-ccccCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEEHHHHHHHHHHHHHHHHHcCCccc
Confidence 55554 5799999999997 477887777666544332 567789999999999999875
Q ss_pred Ch-----hHHHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCC
Q 048376 138 DQ-----EAFASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDE 212 (221)
Q Consensus 138 ~~-----~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 212 (221)
.. +.+...+...+....... ...|++.++ +....++..+..+.+.+++.++|+++++. + . .+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~r~~~--~---~---~~~ 231 (470)
T 2ij2_A 164 SFYRDQPHPFITSMVRALDEAMNKL--QRANPDDPA--YDENKRQFQEDIKVMNDLVDKIIADRKAS--G---E---QSD 231 (470)
T ss_dssp GGGCSSCCHHHHHHHHHHHHHHHTC-----CTTSGG--GHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C---C---CCS
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHH--hhhhhHhhc--cchHHHHHHHHHHHHHHHHHHHHHHHHhc--c---c---Cch
Confidence 32 244444444333211111 111444433 12233455667778888999999988764 2 1 357
Q ss_pred cHHHHhhc
Q 048376 213 DLVDVLLK 220 (221)
Q Consensus 213 d~ld~ll~ 220 (221)
||++.|++
T Consensus 232 dll~~ll~ 239 (470)
T 2ij2_A 232 DLLTHMLN 239 (470)
T ss_dssp SHHHHHHH
T ss_pred hHHHHHHh
Confidence 99998874
No 17
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A*
Probab=99.89 E-value=2.3e-22 Score=169.34 Aligned_cols=202 Identities=16% Similarity=0.180 Sum_probs=128.9
Q ss_pred CCCCcccccccccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCCCc
Q 048376 1 PWKLPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNYRD 80 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~~~ 80 (221)
|+++|++||++++ ..+++..+.+|.++||+||++++|+.+++||+||+++++++.++...|+.|+.......+. +.+
T Consensus 10 p~~~P~iG~~~~~-~~~~~~~~~~l~~~yG~v~~~~~~~~~~~vv~~~~~~~~il~~~~~~~~~~~~~~~~~~~~--g~~ 86 (455)
T 2cib_A 10 SGGHDEHGHLEEF-RTDPIGLMQRVRDELGDVGTFQLAGKQVVLLSGSHANEFFFRAGDDDLDQAKAYPFMTPIF--GEG 86 (455)
T ss_dssp SCCCBTTBTHHHH-TTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEECTTSCGGGHHHH--C--
T ss_pred CCCCCCccCHHHH-hhChHHHHHHHHHHcCCEEEEEeCCceEEEECCHHHHHHHHhcCccccCcccchhHHHhhc--CCc
Confidence 4479999999998 5678899999999999999999999999999999999999998877899987543332322 234
Q ss_pred eeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH------------------HHHHHHHHHHHHHHHhCCCCCC--hh
Q 048376 81 IVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK------------------SKIYSLMYGITSRAAFGNRSRD--QE 140 (221)
Q Consensus 81 ~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~------------------~~~~~~~~~vi~~~~fG~~~~~--~~ 140 (221)
+. . +|+.|+++|+++ .+.|+.+.++.+.+.+++ ..+..++.++|+.++||.+++. ++
T Consensus 87 ~~-~-~~~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~~~~~~~vd~~~~~~~~~~~vi~~~~fG~~~~~~~~~ 163 (455)
T 2cib_A 87 VV-F-DASPERRKEMLH-NAALRGEQMKGHAATIEDQVRRMIADWGEAGEIDLLDFFAELTIYTSSACLIGKKFRDQLDG 163 (455)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEHHHHHHHHHHHHHHHHHTCHHHHTTCCH
T ss_pred cc-c-CcHHHHHHHhhh-ccccCHHHHHHHHHHHHHHHHHHHHHhCCCCcEeHHHHHHHHHHHHHHHHHcCCCcchhhhH
Confidence 43 3 589999999997 578888888777665543 6788899999999999988643 23
Q ss_pred HHHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 141 AFASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
.+......+.... .....++|++. .+..++..+..+.+.+++.+.|++++++.+. . ...+|+++.|++
T Consensus 164 ~~~~~~~~~~~~~--~~~~~~~p~l~-----~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~---~--~~~~dll~~ll~ 231 (455)
T 2cib_A 164 RFAKLYHELERGT--DPLAYVDPYLP-----IESFRRRDEARNGLVALVADIMNGRIANPPT---D--KSDRDMLDVLIA 231 (455)
T ss_dssp HHHHHHHHHHTTC--CGGGGTCTTCS-----CHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------CCCHHHHHHH
T ss_pred HHHHHHHHHHhhh--hHHHHhcccCC-----ChhHHHHHHHHHHHHHHHHHHHHHHHhcccC---C--CCcccHHHHHHH
Confidence 4444444432211 11223445321 1122445567778888999999998865321 1 123499999874
No 18
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein, alternative splicing, cholesterol biosynthesis, endoplasmic reticulum, heme, iron; HET: HEM KLN BCD; 2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Probab=99.89 E-value=1.8e-23 Score=176.14 Aligned_cols=202 Identities=16% Similarity=0.242 Sum_probs=142.3
Q ss_pred CCCCcccccccccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCc-hhhhhhcCCC
Q 048376 1 PWKLPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFP-PAQIISYNYR 79 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~-~~~~~~~~~~ 79 (221)
|+++|+|||++++ ..+++..+.+|+++||+||++++|++++|||+++++++++|.++...|+.++... ....+. +.
T Consensus 17 P~~lP~iG~l~~~-~~~~~~~~~~~~~~yG~v~~l~l~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~--g~ 93 (461)
T 3i3k_A 17 FSPIPFLGHAIAF-GKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTPVF--GK 93 (461)
T ss_dssp CCSSTTTBTHHHH-HHCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHHHHHHH--CT
T ss_pred CCCCCccccHHhh-ccCHHHHHHHHHHHhCCEEEEEecCceEEEEeChHHHHHHHhccccccccchHHHHhhhhhc--CC
Confidence 4579999999999 5678899999999999999999999999999999999999998887777654321 111222 45
Q ss_pred ceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH------------------HHHHHHHHHHHHHHHhCCCCCC--h
Q 048376 80 DIVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK------------------SKIYSLMYGITSRAAFGNRSRD--Q 139 (221)
Q Consensus 80 ~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~------------------~~~~~~~~~vi~~~~fG~~~~~--~ 139 (221)
++++..+|+.|+++||++. +.|+...++.+.+++++ +.+..++.++++.++||.++.. +
T Consensus 94 g~~~~~~g~~w~~~Rr~~~-~~f~~~~l~~~~~~~~~~~~~ll~~l~~~~~~dl~~~~~~~~~~~~~~~~~G~~~~~~~~ 172 (461)
T 3i3k_A 94 GVAYDVPNPVFLEQKKMLK-SGLNIAHFKQHVSIIEKETKEYFESWGESGEKNVFEALSELIILTASHCLHGKEIRSQLN 172 (461)
T ss_dssp TSGGGSCHHHHHHHHHHHH-HHSSHHHHHHHHHHHHHHHHHHGGGGCSEEEEEHHHHHHHHHHHHHHHHHTCHHHHHTCC
T ss_pred eeeeCCCcHHHHHHHHHHh-hhhCHHHHHHHHHHHHHHHHHHHHHhhhcCCcCHHHHHHHHHHHHHHHHHccHhhhhHHH
Confidence 6666667999999999974 67888878777665543 6788889999999999976642 2
Q ss_pred hHHHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhh
Q 048376 140 EAFASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLL 219 (221)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll 219 (221)
+.+......+.... .....++|. |++ .+..++..+..+.+.+++.+.++++++..+ ...|+++.++
T Consensus 173 ~~~~~~~~~~~~~~--~~~~~~~P~--~l~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~d~l~~ll 238 (461)
T 3i3k_A 173 EKVAQLYADLDGGF--SHAAWLLPG--WLP--LPSFRRRDRAHREIKDIFYKAIQKRRQSQE--------KIDDILQTLL 238 (461)
T ss_dssp HHHHHHHHHHHTTS--SHHHHHSCT--TSC--CHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--------CCCSHHHHHH
T ss_pred HHHHHHHHHHHhcc--ccchhhccc--ccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------ccccHHHHHH
Confidence 23323332221111 111223342 221 122355667778888899888888865421 3578999887
Q ss_pred c
Q 048376 220 K 220 (221)
Q Consensus 220 ~ 220 (221)
+
T Consensus 239 ~ 239 (461)
T 3i3k_A 239 D 239 (461)
T ss_dssp T
T ss_pred H
Confidence 5
No 19
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=99.89 E-value=4.7e-22 Score=168.41 Aligned_cols=210 Identities=15% Similarity=0.128 Sum_probs=135.3
Q ss_pred CCCcccccccccCC----CCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhh---hh
Q 048376 2 WKLPLIGNLHQLAG----SLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQ---II 74 (221)
Q Consensus 2 ~~~PiiGnl~~l~~----~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~---~~ 74 (221)
++.|+. |++++.. ..++..+.+|.++||||+++++|+.++|+|+||++++++|.+++ .|++||...... ..
T Consensus 15 ~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~kYG~i~~~~~g~~~~vvv~dp~~~~~il~~~~-~f~~r~~~~~~~~~~~~ 92 (487)
T 3n9y_A 15 GDNGWL-NLYHFWRETGTHKVHLHHVQNFQKYGPIYREKLGNVESVYVIDPEDVALLFKSEG-PNPERFLIPPWVAYHQY 92 (487)
T ss_dssp CSCHHH-HHHHHHHHTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHHTCC-SSCCCCCCHHHHHHHHH
T ss_pred CCCChh-hHHHHHhcCCCcchhHHHHHHHHHcCceeeccCCCCCEEEEcCHHHHHHHHHhCC-CCCCCCCCcHHHHHHHH
Confidence 335554 7777632 24678899999999999999999999999999999999998764 799998654321 12
Q ss_pred hcCCCceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH--------------------------HHHHHHHHHHHH
Q 048376 75 SYNYRDIVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK--------------------------SKIYSLMYGITS 128 (221)
Q Consensus 75 ~~~~~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~--------------------------~~~~~~~~~vi~ 128 (221)
...+.++ +..+|+.|+++||++.+.+|+.+.++.+.+++++ ..+..++++||+
T Consensus 93 ~~~~~~l-~~~~g~~w~~~Rr~l~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~~~t~dvi~ 171 (487)
T 3n9y_A 93 YQRPIGV-LLKKSAAWKKDRVALNQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDISDDLFRFAFESIT 171 (487)
T ss_dssp TTCCCCG-GGCCHHHHHHHHHHHHHHHTSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSSSEEECCHHHHHHHHHHHHH
T ss_pred ccccCCC-ccCCcHHHHHHHHhcCcccCCchHHHHhhhHHHHHHHHHHHHHHHHhcccccCCCCccHHHHHHHHHHHHHH
Confidence 1123454 4457999999999986557888777766544432 467889999999
Q ss_pred HHHhCCCCCC----h-h---HHHHHHHHHHHHcCCCcccccccc--ccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048376 129 RAAFGNRSRD----Q-E---AFASVRGEITKLMSGFNIADMFPS--VGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKK 198 (221)
Q Consensus 129 ~~~fG~~~~~----~-~---~~~~~~~~~~~~~~~~~~~~~~P~--l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 198 (221)
+++||.++.. . . .+...+..++.... ....+|. ++++ .....++..+..+.+.+++.+.++++.+
T Consensus 172 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 246 (487)
T 3n9y_A 172 NVIFGERQGMLEEVVNPEAQRFIDAIYQMFHTSV---PMLNLPPDLFRLF--RTKTWKDHVAAWDVIFSKADIYTQNFYW 246 (487)
T ss_dssp HHHHSSCCCTTSSSCCHHHHHHHHHHHHHHHHHG---GGTTSCHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccccccCCCCChHHHHHHHHHHHHHHHHH---HHHhcCHHHHhhc--ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999852 1 1 23333433333222 1234443 2222 1122233444455566677777776665
Q ss_pred hhhhhhhccCCCCCcHHHHhhc
Q 048376 199 RKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 199 ~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
...... .......|+++.+++
T Consensus 247 ~~~~~~-~~~~~~~d~l~~ll~ 267 (487)
T 3n9y_A 247 ELRQKG-SVHHDYRGILYRLLG 267 (487)
T ss_dssp HHHHHC-CCCSSCCCHHHHHHH
T ss_pred HHHhcC-CcccchHHHHHHHHh
Confidence 443210 001245789988873
No 20
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1, molecular mechanism, heme, iron, metal-binding, monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor A3} PDB: 3el3_A*
Probab=99.87 E-value=1.9e-22 Score=170.34 Aligned_cols=200 Identities=15% Similarity=0.219 Sum_probs=116.9
Q ss_pred CCCCcccccccccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCc-hhhhhhcCCC
Q 048376 1 PWKLPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFP-PAQIISYNYR 79 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~-~~~~~~~~~~ 79 (221)
|+++|++||++++ ..+++..+.+|.+ ||||+++++|+.++++|+||+++++++.++ .|+.++..+ ....+. +..
T Consensus 28 P~~~P~iG~~~~~-~~~p~~~~~~l~~-yGpv~~~~~g~~~~~vv~~~~~i~~il~~~--~~~~~~~~~~~~~~~~-g~~ 102 (467)
T 3dbg_A 28 GGGVPLLGHGWRL-ARDPLAFMSQLRD-HGDVVRIKLGPKTVYAVTNPELTGALALNP--DYHIAGPLWESLEGLL-GKE 102 (467)
T ss_dssp CCCCSTTHHHHHH-HHCHHHHHHHHGG-GCSEEEEEETTEEEEEECSHHHHHHHHHCT--TC------------------
T ss_pred CCCCCcccchHHh-ccCHHHHHHHHHH-hCCEEEEEeCCccEEEECCHHHHHHHHhCc--CcccccchHHHHHHhc-CCC
Confidence 5679999999998 5677888999988 999999999999999999999999999877 775555322 222221 114
Q ss_pred ceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH------------------HHHHHHHHHHHHHHHhCCCCCCh--
Q 048376 80 DIVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK------------------SKIYSLMYGITSRAAFGNRSRDQ-- 139 (221)
Q Consensus 80 ~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~------------------~~~~~~~~~vi~~~~fG~~~~~~-- 139 (221)
+++. .+|+.|+++||++ .+.|+...++.+.+.+++ ..+..++.++|+.++||.+++.+
T Consensus 103 ~l~~-~dg~~h~~~R~~l-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~d~~~~~~~~~~~vi~~~~~g~~~~~~~~ 180 (467)
T 3dbg_A 103 GVAT-ANGPLHRRQRRTI-QPAFRLDAIPAYGPIMEEEAHALTERWQPGKTVDATSESFRVAVRVAARCLLRGQYMDERA 180 (467)
T ss_dssp --------------CGGG-HHHHSTTTSTTTHHHHHHHHHHHHHHSCTTSCEEHHHHHHHHHHHHHHHHHSCSSCCHHHH
T ss_pred Cccc-CCcHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHhccCCcCcHHHHHHHHHHHHHHHHHhCCcccchhH
Confidence 5544 4799999999997 467777666666544433 57888999999999999998752
Q ss_pred hHHHHHHHHHHHHcCCCcccccccc--ccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHH
Q 048376 140 EAFASVRGEITKLMSGFNIADMFPS--VGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDV 217 (221)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~P~--l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ 217 (221)
+.+...+..+.... ....++|+ +.++ +.+..++..+..+.+.+++.+.+++++++. . .+.|+++.
T Consensus 181 ~~~~~~~~~~~~~~---~~~~~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~-----~---~~~dll~~ 247 (467)
T 3dbg_A 181 ERLCVALATVFRGM---YRRMVVPLGPLYRL--PLPANRRFNDALADLHLLVDEIIAERRASG-----Q---KPDDLLTA 247 (467)
T ss_dssp HHHHHHHHHHHHC-----------------------------CCHHHHHHHHHHHHHHHTTCC-----S---SCCSHHHH
T ss_pred HHHHHHHHHHHHHH---HHHhccchhhhhhC--CChHhHHHHHHHHHHHHHHHHHHHHHHhcC-----C---CchHHHHH
Confidence 24444444433321 11234453 2222 122334555667788888888888876531 1 46799998
Q ss_pred hhc
Q 048376 218 LLK 220 (221)
Q Consensus 218 ll~ 220 (221)
|++
T Consensus 248 ll~ 250 (467)
T 3dbg_A 248 LLE 250 (467)
T ss_dssp HTT
T ss_pred HHh
Confidence 875
No 21
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A*
Probab=99.85 E-value=6.6e-21 Score=159.99 Aligned_cols=195 Identities=12% Similarity=0.198 Sum_probs=134.1
Q ss_pred CCCCcccccccccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCCCc
Q 048376 1 PWKLPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNYRD 80 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~~~ 80 (221)
|+++|++||++++ ..+++ .+.+|.++||+|+++++++.++|+|+||+++++++.+++..|+++... ....+. +..+
T Consensus 17 p~~~P~iG~~~~~-~~~~~-~~~~~~~~yg~v~~~~~~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~-~~~~~~-g~~~ 92 (444)
T 2ve3_A 17 DFGLPWLGETLNF-LNDGD-FGKKRQQQFGPIFKTRLFGKNVIFISGALANRFLFTKEQETFQATWPL-STRILL-GPNA 92 (444)
T ss_dssp CCCBTTTBTHHHH-HHCTT-HHHHHHHHHCSSEEEEETTEEEEEECSHHHHHHHTSSCTTTEEEECCH-HHHHHH-CTTS
T ss_pred CCCCCccccHHHH-hcCcH-HHHHHHHHcCCeEEEeeCCCCEEEEcCHHHHHHHHhCCCcccccchhH-HHHHHh-Cccc
Confidence 5679999999988 34566 788999999999999988889999999999999999887778755321 222222 2235
Q ss_pred eeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH------------------HHHHHHHHHHHHHHHhCCCCCCh-hH
Q 048376 81 IVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK------------------SKIYSLMYGITSRAAFGNRSRDQ-EA 141 (221)
Q Consensus 81 ~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~------------------~~~~~~~~~vi~~~~fG~~~~~~-~~ 141 (221)
+++ .+|+.|+++||++ .+.|+.+.++.+.+.+++ +.+..+++++|++++|| +.+.+ +.
T Consensus 93 l~~-~~g~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~vd~~~~~~~~~~~vi~~~~fG-~~~~~~~~ 169 (444)
T 2ve3_A 93 LAT-QMGEIHRSRRKIL-YQAFLPRTLDSYLPKMDGIVQGYLEQWGKANEVIWYPQLRRMTFDVAATLFMG-EKVSQNPQ 169 (444)
T ss_dssp GGG-CCHHHHHHHHHHH-HGGGCHHHHHTTHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHHHHHHHTC-HHHHSCTT
T ss_pred ccc-CCchHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHhcCCCcEeHHHHHHHHHHHHHHHHHcC-CCcccHHH
Confidence 554 4699999999996 578888777776554443 56788999999999999 33211 33
Q ss_pred HHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 142 FASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
+.+.+.......... ...+|. ...++..+..+.+.+++.+.|++++++ . . ...|+++.|++
T Consensus 170 ~~~~~~~~~~~~~~~--~~~~p~--------~~~~~~~~~~~~~~~~~~~~i~~r~~~--~---~---~~~d~l~~ll~ 230 (444)
T 2ve3_A 170 LFPWFETYIQGLFSL--PIPLPN--------TLFGKSQRARALLLAELEKIIKARQQQ--P---P---SEEDALGILLA 230 (444)
T ss_dssp HHHHHHHHHHHHSSC--CCCSTT--------SHHHHHHHHHHHHHHHHHHHHHHHHTS--C---C---CCSSHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--CccCCC--------cHHHHHHHHHHHHHHHHHHHHHHHhcC--C---C---CccCHHHHHHh
Confidence 333333332221110 011221 112445566778888999999988764 1 1 35789988874
No 22
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* 4enh_A* 4fia_A*
Probab=99.85 E-value=3.7e-20 Score=155.61 Aligned_cols=195 Identities=14% Similarity=0.197 Sum_probs=130.8
Q ss_pred CCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchh-hh-hh--cCCCceeeCCCChHH
Q 048376 15 GSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPA-QI-IS--YNYRDIVFSPYGDSW 90 (221)
Q Consensus 15 ~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~-~~-~~--~~~~~~~~~~~g~~W 90 (221)
++.+|..+.+|+++||||+++++|+.++|+|+||++++++|.+ ..|..+|..+.. .. .. ..+.++++..+|+.|
T Consensus 9 g~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~p~~~~~il~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~w 86 (456)
T 3mdm_A 9 GRVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMS--TKYNKDSKMYRALQTVFGERLFGQGLVSECNYERW 86 (456)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTC--TTSCCCHHHHHHHHEETTEESSTTSTTTCCCHHHH
T ss_pred cchHHHHHHHHHHHhCCeEEEEeCCCCEEEECCHHHHHHHHhh--ccccccchhHHHHHHhhcccccCCCcccCCChHHH
Confidence 3456889999999999999999999999999999999999974 356666532111 11 11 013455556679999
Q ss_pred HHHHHHHHHhhcCHHHHHHhHHHHHH----------------------HHHHHHHHHHHHHHHhCCCCCCh----hHHHH
Q 048376 91 KQLRKICVSELLSAKRVQSFQSIREK----------------------SKIYSLMYGITSRAAFGNRSRDQ----EAFAS 144 (221)
Q Consensus 91 k~~Rr~~~~~~~~~~~~~~~~~i~~~----------------------~~~~~~~~~vi~~~~fG~~~~~~----~~~~~ 144 (221)
+++||++ .+.|+.+.++.+.+.+++ +.+..+++++|+.++||.+++.. +.+..
T Consensus 87 ~~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fG~~~~~~~~~~~~~~~ 165 (456)
T 3mdm_A 87 HKQRRVI-DLAFSRSSLVSLMETFNEKAEQLVEILEAKADGQTPVSMQDMLTYTAMDILAKAAFGMETSMLLGAQKPLSQ 165 (456)
T ss_dssp HHHHHHH-GGGGSHHHHHTTHHHHHHHHHHHHHHHHHTCSSSSCEEHHHHHHHHHHHHHHHHHHSCCCCGGGTCCHHHHH
T ss_pred HHHHhhc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHHHHHHHHHHcCCChhhhcccccHHHH
Confidence 9999996 578888887776554433 56788999999999999998642 24444
Q ss_pred HHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 145 VRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
.+..+...... ...|++.+++......+...+..+.+.+++.+.++++++..+. + ...+.|+++.+++
T Consensus 166 ~~~~~~~~~~~----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~---~-~~~~~d~l~~ll~ 233 (456)
T 3mdm_A 166 AVKLMLEGITA----SRNTLAKFLPGKRKQLREVRESIRFLRQVGRDWVQRRREALKR---G-EEVPADILTQILK 233 (456)
T ss_dssp HHHHHHHHHHH----HHHSCGGGCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---T-CCCCCCHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---c-ccchhhHHHHHHH
Confidence 44443332211 0123333332111122344556677888888889888876543 1 1246799998874
No 23
>3v8d_A Cholesterol 7-alpha-monooxygenase; cytochrome, oxidoreductase; HET: HEM 0GV; 1.90A {Homo sapiens} PDB: 3sn5_A* 3dax_A*
Probab=99.83 E-value=2.8e-21 Score=164.07 Aligned_cols=196 Identities=12% Similarity=0.141 Sum_probs=128.1
Q ss_pred CCC-CcccccccccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCC-CccCCCCCCchhhhhhcCC
Q 048376 1 PWK-LPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHD-VVFASRPHFPPAQIISYNY 78 (221)
Q Consensus 1 P~~-~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~-~~f~~Rp~~~~~~~~~~~~ 78 (221)
|++ +|+|||++++ ..+++..+.+|.++|||||++++|+.+++||+||++++++|.++. ..|++++.......+ +
T Consensus 18 p~~~lPliG~~~~~-~~~p~~~~~~l~~~yGpv~~~~lg~~~~vvv~~p~~v~~vl~~~~~~~~~~~~~~~~~~~~---g 93 (491)
T 3v8d_A 18 ENGLIPYLGCALQF-GANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFALSAKAF---G 93 (491)
T ss_dssp EEEEESSTTTTGGG-TCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHSCCTTEESSHHHHHHHHHHH---T
T ss_pred CCCCcceeccHHHH-hcCHHHHHHHHHHHcCCceEEEECCEEEEEEcCHHHHHHHHhcCCccchHHHHHHHHHHhc---C
Confidence 345 6999999999 778999999999999999999999999999999999999997654 245555432222223 2
Q ss_pred CceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH-------------------------HHHHHHHHHHHHHHHhC
Q 048376 79 RDIVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK-------------------------SKIYSLMYGITSRAAFG 133 (221)
Q Consensus 79 ~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~-------------------------~~~~~~~~~vi~~~~fG 133 (221)
.+.....+|+.|+++|+.+ .+.|++..++.+...+.+ +.+...+.++++..+||
T Consensus 94 ~~~~~~~~g~~~~~~Rr~~-~~~f~~~~l~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~fG 172 (491)
T 3v8d_A 94 HRSIDPMDGNTTENINDTF-IKTLQGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVMFEAGYLTIFG 172 (491)
T ss_dssp CCCCCGGGSSBCCCHHHHH-HHHHSHHHHHHHHHHHHHHHHHHHSCCSSCGGGGCSCEEEEHHHHHHHHHHHHHHHHHHC
T ss_pred CcccccccchhHHHHHHHH-HHHcCccchHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCHHHHHHHHHHHHHHHHHcC
Confidence 2333334699999999986 567888877776554432 56778888999999999
Q ss_pred CCCCChh----HHHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCC
Q 048376 134 NRSRDQE----AFASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIG 209 (221)
Q Consensus 134 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 209 (221)
......+ .+.+.++.+.. +.+.+|.+.+. .+....+++.+..+++.+++.+.+++++ .
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~-~p~~~~~~~~~a~~~l~~~~~~~~~~~~----~------- 234 (491)
T 3v8d_A 173 RDLTRRDTQKAHILNNLDNFKQ------FDKVFPALVAG-LPIHMFRTAHNAREKLAESLRHENLQKR----E------- 234 (491)
T ss_dssp BCCSCGGGHHHHHHHHHHHHHH------HHHHHHHHHTT-CCGGGCHHHHHHHHHHHHHTSHHHHTTC----B-------
T ss_pred ccccccchhhhhhHHHHHHHHH------HHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHHHhcc----c-------
Confidence 9876433 22222322221 23344544321 1222334555566665555544333221 1
Q ss_pred CCCcHHHHhh
Q 048376 210 DDEDLVDVLL 219 (221)
Q Consensus 210 ~~~d~ld~ll 219 (221)
...|+++.++
T Consensus 235 ~~~d~l~~l~ 244 (491)
T 3v8d_A 235 SISELISLRM 244 (491)
T ss_dssp SCCHHHHHHH
T ss_pred cccHHHHHHH
Confidence 2467777665
No 24
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Probab=99.82 E-value=1.4e-20 Score=155.56 Aligned_cols=178 Identities=17% Similarity=0.217 Sum_probs=125.4
Q ss_pred CCCcccccccccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCC-CCchhhhhhcCCCc
Q 048376 2 WKLPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRP-HFPPAQIISYNYRD 80 (221)
Q Consensus 2 ~~~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp-~~~~~~~~~~~~~~ 80 (221)
+.+|++||++++ ..+++..+.+|.++||||++ ++|+.++|+|+||+++++++.++ .|+++| .......+. +.+
T Consensus 5 ~~~p~iGnl~~~-~~~p~~~~~~l~~~yGpv~~-~~g~~~~vvv~~~~~i~~il~~~--~f~~~~~~~~~~~~~~--g~~ 78 (389)
T 1n97_A 5 SLREAWPYLKDL-QQDPLAVLLAWGRAHPRLFL-PLPRFPLALIFDPEGVEGALLAE--GTTKATFQYRALSRLT--GRG 78 (389)
T ss_dssp CHHHHHHHHHHH-HHCHHHHHHHHHHHCSEEEE-CCTTCCEEEECSHHHHHHHHHCT--TEECCSHHHHHHHHHH--CSS
T ss_pred ccccccccHHHH-hhChHHHHHHHHHHcCCeeE-ecCCccEEEECCHHHHHHHHhcC--CCCCChhHHHHHHHHh--CCc
Confidence 458999999998 45788899999999999999 99999999999999999999877 898887 221222332 345
Q ss_pred eeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH-----------------HHHHHHHHHHHHHHHhCCCCCChhHHH
Q 048376 81 IVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK-----------------SKIYSLMYGITSRAAFGNRSRDQEAFA 143 (221)
Q Consensus 81 ~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~-----------------~~~~~~~~~vi~~~~fG~~~~~~~~~~ 143 (221)
+++. +|+.|+++||++ .+.|++..++.+.+.+++ +.+..++.++|+.++||.+++ + .+.
T Consensus 79 l~~~-~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~dl~~~~~~~~~~vi~~~~fG~~~~-~-~~~ 154 (389)
T 1n97_A 79 LLTD-WGESWKEARKAL-KDPFLPKNVRGYREAMEEEARAFFGEWRGEERDLDHEMLALSLRLLGRALFGKPLS-P-SLA 154 (389)
T ss_dssp TTTC-CHHHHHHHHHHH-CGGGSHHHHHTTHHHHHHHHHHHHHTCCSCCEEHHHHHHHHHHHHHHHHHHSSCCC-H-HHH
T ss_pred cccC-CcHHHHHHHHHh-CcccCHHHHHHHHHHHHHHHHHHHHHccCCcCcHHHHHHHHHHHHHHHHHcCCcch-H-HHH
Confidence 5544 699999999996 578888888777655543 567899999999999999987 3 454
Q ss_pred HHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 048376 144 SVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINE 195 (221)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~ 195 (221)
+.+..+..... .. .++++.+++ ....++..+..+.+.+++.+.+++
T Consensus 155 ~~~~~~~~~~~-~~---~~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~i~~ 200 (389)
T 1n97_A 155 EHALKALDRIM-AQ---TRSPLALLD--LAAEARFRKDRGALYREAEALIVH 200 (389)
T ss_dssp HHHHHHHHHHH-HH---HHCGGGGGC--HHHHHHHHHHHHHHHHHHGGGTTS
T ss_pred HHHHHHHHHHH-HH---HhhHHHhcC--CchhHHHHHHHHHHHHHHHHHHHH
Confidence 44444433221 11 112223321 112344555566666666666554
No 25
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding; HET: HEM PXI; 1.7A {Streptomyces venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Probab=99.81 E-value=1.4e-19 Score=151.84 Aligned_cols=183 Identities=16% Similarity=0.222 Sum_probs=125.9
Q ss_pred CCCCccccccc-ccCCCCccHHHHHHHhhcCCceEEEc-CCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhh---h
Q 048376 1 PWKLPLIGNLH-QLAGSLPHHRLRDLTNKYGPLMLLQL-GQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQII---S 75 (221)
Q Consensus 1 P~~~PiiGnl~-~l~~~~~~~~~~~~~~~YG~i~~l~~-g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~---~ 75 (221)
|+++|++||+. .+ ..+++..+.+| ++||||+++++ |+.++|+|+||++++++|.++ .|++||........ .
T Consensus 31 P~~~p~lG~~~~~~-~~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~ 106 (436)
T 2cd8_A 31 SPPVLDLGALGQDF-AADPYPTYARL-RAEGPAHRVRTPEGDEVWLVVGYDRARAVLADP--RFSKDWRNSTTPLTEAEA 106 (436)
T ss_dssp ---CCBHHHHHHHH-HHCCHHHHHHH-HTTCSEEEEECSSCCEEEEECSHHHHHHHHHCT--TEECCGGGCSSCCCTTGG
T ss_pred CCccccCCCCCccc-ccChHHHHHHH-HHhCCeeeeccCCCCeEEEEcCHHHHHHHHcCC--CCcccccccccccccccc
Confidence 67899999987 44 45788999999 99999999998 889999999999999999876 68888742111110 1
Q ss_pred cCCCceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH--------------------HHH-HHHHHHHHHHHHhCC
Q 048376 76 YNYRDIVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK--------------------SKI-YSLMYGITSRAAFGN 134 (221)
Q Consensus 76 ~~~~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~--------------------~~~-~~~~~~vi~~~~fG~ 134 (221)
..+.++++ .+|+.|+++||++ .+.|++..++.+.+.+++ ..+ ..++++||+. +||.
T Consensus 107 ~~~~~l~~-~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~vd~~~~~~~~~~~~vi~~-~~G~ 183 (436)
T 2cd8_A 107 ALNHNMLE-SDPPRHTRLRKLV-AREFTMRRVELLRPRVQEIVDGLVDAMLAAPDGRADLMESLAWPLPITVISE-LLGV 183 (436)
T ss_dssp GTCCSGGG-CCTTHHHHHHHHH-GGGSSHHHHHTTHHHHHHHHHHHHHHHHTCTTSCEEHHHHTTTHHHHHHHHH-HHTC
T ss_pred cccccccc-cCchHHHHHHHHh-HHhhCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHH-HhCC
Confidence 11345544 5799999999996 578998877776554443 223 4678999997 6998
Q ss_pred CCCChhHHHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcH
Q 048376 135 RSRDQEAFASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDL 214 (221)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ 214 (221)
+.+..+.+......++. . . .| ++..+....+.+++.+.|+++++. ...|+
T Consensus 184 ~~~~~~~~~~~~~~~~~---~---~--~~------------~~~~~~~~~~~~~~~~~i~~r~~~----------~~~d~ 233 (436)
T 2cd8_A 184 PEPDRAAFRVWTDAFVF---P---D--DP------------AQAQTAMAEMSGYLSRLIDSKRGQ----------DGEDL 233 (436)
T ss_dssp CGGGHHHHHHHHHHHHS---C---S--ST------------THHHHHHHHHHHHHHHHHHHHTTS----------CCCSH
T ss_pred CHHHHHHHHHHHHHHhc---c---C--CH------------HHHHHHHHHHHHHHHHHHHHHhcC----------CCCCH
Confidence 87654455444433221 0 0 01 234456677888888888877642 23688
Q ss_pred HHHhhc
Q 048376 215 VDVLLK 220 (221)
Q Consensus 215 ld~ll~ 220 (221)
++.|++
T Consensus 234 l~~ll~ 239 (436)
T 2cd8_A 234 LSALVR 239 (436)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888763
No 26
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid complex, riken structural genomics/proteomics initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Probab=99.81 E-value=1.4e-18 Score=144.69 Aligned_cols=192 Identities=10% Similarity=0.083 Sum_probs=131.4
Q ss_pred CCCCcccccccccCCCCccHHHHHHHhhcC-CceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCch--hhhhhcC
Q 048376 1 PWKLPLIGNLHQLAGSLPHHRLRDLTNKYG-PLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPP--AQIISYN 77 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~~~~~~~~~~~YG-~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~--~~~~~~~ 77 (221)
|+|.|++||++++ ..+++..+.+|.++|| ||+++++|+.++|+|+++++++.++. .+.|+.++..+. ...+. +
T Consensus 5 ~Pg~P~lG~~~~~-~~~p~~~~~~l~~~yg~pv~~~~~~g~~~v~v~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~-g 80 (417)
T 1izo_A 5 IPHDKSLDNSLTL-LKEGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFYD--TDRFQRQNALPKRVQKSLF-G 80 (417)
T ss_dssp -CBCCCTTHHHHH-HHHGGGHHHHHHHHTTSSEEEEEETTEEEEEECSHHHHHHHTC--TTTEECTTCSCHHHHTTTT-C
T ss_pred CCCCCccchHHHH-hhCcHHHHHHHHHHhCCCeEEeecCCccEEEECCHHHHHHHhc--ccccccccccccchhhhhc-c
Confidence 5678999999998 5678899999999998 89999999999999999999985443 346776654321 11221 2
Q ss_pred CCceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH------------------HHHHHHHHHHHHHHHhCCCCCCh
Q 048376 78 YRDIVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK------------------SKIYSLMYGITSRAAFGNRSRDQ 139 (221)
Q Consensus 78 ~~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~------------------~~~~~~~~~vi~~~~fG~~~~~~ 139 (221)
..+++ ..+|+.|+++|+++ .+.|++..++.+.+.+++ ..+..+++++|+.+ ||.+++..
T Consensus 81 ~~~l~-~~dg~~h~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~dl~~~~~~~~~~vi~~~-~G~~~~~~ 157 (417)
T 1izo_A 81 VNAIQ-GMDGSAHIHRKMLF-LSLMTPPHQKRLAELMTEEWKAAVTRWEKADEVVLFEEAKEILCRVACYW-AGVPLKET 157 (417)
T ss_dssp TTCGG-GCCHHHHHHHHHHH-HHTSSHHHHHHHHHHHHHHHHHHHHHHTTSSEEEHHHHHHHHHHHHHHHH-HTCCCCTT
T ss_pred cccee-ecCChHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCeeHHHHHHHHHHHHHHHH-cCCCCCch
Confidence 23444 45799999999996 578998888877655543 56788999999998 69887653
Q ss_pred h--HHHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHH
Q 048376 140 E--AFASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDV 217 (221)
Q Consensus 140 ~--~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ 217 (221)
+ .+...+..++.... ...| ...+..+..+.+.+++.++|++++++... . ...|+++.
T Consensus 158 ~~~~~~~~~~~~~~~~~-----~~~~----------~~~~~~~~~~~~~~~~~~~i~~r~~~~~~---~---~~~d~l~~ 216 (417)
T 1izo_A 158 EVKERADDFIDMVDAFG-----AVGP----------RHWKGRRARPRAEEWIEVMIEDARAGLLK---T---TSGTALHE 216 (417)
T ss_dssp THHHHHHHHHHHHHHTT-----CCSH----------HHHHHHHHHHHHHHHHHHHHHHHHTTSSC---C---CTTSHHHH
T ss_pred HHHHHHHHHHHHHhhcc-----cCCc----------cchhHHHHHHHHHHHHHHHHHHHHhhccC---C---CcCCHHHH
Confidence 2 22222222222111 0111 12334567778889999999998875322 1 34688888
Q ss_pred hhc
Q 048376 218 LLK 220 (221)
Q Consensus 218 ll~ 220 (221)
|+.
T Consensus 217 ll~ 219 (417)
T 1izo_A 217 MAF 219 (417)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 27
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase, oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas paucimobilis} PDB: 3awq_A* 3awp_A*
Probab=99.80 E-value=1.8e-18 Score=143.91 Aligned_cols=194 Identities=11% Similarity=0.086 Sum_probs=129.5
Q ss_pred CCCCcccccccccCCCCccHHHHHHHhhc-CCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCch--hhhhhcC
Q 048376 1 PWKLPLIGNLHQLAGSLPHHRLRDLTNKY-GPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPP--AQIISYN 77 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~~~~~~~~~~~Y-G~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~--~~~~~~~ 77 (221)
|||.|++||++++ ..+++..+.++.++| |||+++++++.++++|+++++++ ++.+ .+.|+.++..+. ...+ .+
T Consensus 4 pPg~P~iG~~~~~-~~~p~~~~~~l~~~y~gpv~~~~~~g~~~~vv~~~~~~~-~l~~-~~~f~~~~~~~~~~~~~~-~g 79 (415)
T 3awm_A 4 TPHTKGPDETLSL-LADPYRFISRQCQRLGANAFESRFLLKKTNCLKGAKAAE-IFYD-TTRFEREGAMPVAIQKTL-LG 79 (415)
T ss_dssp -----CCCCHHHH-HHSTTTHHHHHHHHHTSSEEEEEETTEEEEEEESHHHHH-HHTC-TTTEECTTCSCHHHHTTT-SC
T ss_pred CCCCCccchHHHH-HhChHHHHHHHHHHhCCCeEEEecCCCcEEEEeCHHHHH-HHhc-ccccccccccchhhhhhc-cC
Confidence 6778999999998 567889999999999 79999999888999999999986 6654 357877654321 1112 12
Q ss_pred CCceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH------------------HHHHHHHHHHHHHHHhCCCCCCh
Q 048376 78 YRDIVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK------------------SKIYSLMYGITSRAAFGNRSRDQ 139 (221)
Q Consensus 78 ~~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~------------------~~~~~~~~~vi~~~~fG~~~~~~ 139 (221)
..+++ ..+|+.|+++|+++ .+.|+++.++.+.+.+++ ..+..++++||+.+ ||..++..
T Consensus 80 ~~~l~-~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~~~~~~~vdl~~~~~~~~~~vi~~~-~G~~~~~~ 156 (415)
T 3awm_A 80 QGGVQ-GLDGETHRHRKQMF-MGLMTPERVRALAQLFEAEWRRAVPGWTRKGEIVFYDELHEPLTRAVCAW-AGVPLPDD 156 (415)
T ss_dssp SSSGG-GCCHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHHHHH-HTCCCCGG
T ss_pred Cccee-ecCcHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHhhccCCcEeHHHHHHHHHHHHHHHH-cCCCCCcc
Confidence 23444 45799999999996 688998888777654443 56788999999999 89887653
Q ss_pred hHHHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhh
Q 048376 140 EAFASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLL 219 (221)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll 219 (221)
+ +....+.+...... ++.+ .+...+..+..+.+.+++.++|++++++... . ...|+++.|+
T Consensus 157 ~-~~~~~~~~~~~~~~------~~~~------~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~---~---~~~d~l~~ll 217 (415)
T 3awm_A 157 E-AGNRAGELRALFDA------AGSA------SPRHLWSRLARRRVDAWAKRIIEGIRAGSIG---S---GSGTAAYAIA 217 (415)
T ss_dssp G-HHHHHHHHHHHHHS------TTCS------SHHHHHHHHHHHHHHHHHHHHHHHHHHTSSC---C---CTTSHHHHHH
T ss_pred h-HHHHHHHHHHHHHH------hccc------CchHHHHHHHHHHHHHHHHHHHHHHHHhhhc---C---CCCCHHHHHH
Confidence 3 22222222222111 1111 1112345567778889999999998875322 1 3468998876
Q ss_pred c
Q 048376 220 K 220 (221)
Q Consensus 220 ~ 220 (221)
.
T Consensus 218 ~ 218 (415)
T 3awm_A 218 W 218 (415)
T ss_dssp H
T ss_pred h
Confidence 4
No 28
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A {Pseudomonas SP} SCOP: a.104.1.1
Probab=99.80 E-value=2.3e-19 Score=150.00 Aligned_cols=199 Identities=8% Similarity=0.053 Sum_probs=128.0
Q ss_pred CCCCcccccccccC---C-CCccHHHHHHHhhcCCceEEEc-CCcCEEEeccHHHHHHHHHhCCCccCCCCC-Cchh---
Q 048376 1 PWKLPLIGNLHQLA---G-SLPHHRLRDLTNKYGPLMLLQL-GQVPAIIVSSPQVAKEVMKTHDVVFASRPH-FPPA--- 71 (221)
Q Consensus 1 P~~~PiiGnl~~l~---~-~~~~~~~~~~~~~YG~i~~l~~-g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~-~~~~--- 71 (221)
|+| ++|++.+.. . .+++..+.+|.+ ||||+++++ |+.+++||+++++|+|+|.+ .+.|++||. ....
T Consensus 8 pp~--~~g~l~~~~~~~~~~~p~~~~~~l~~-~gpv~~~~~~g~~~~vvv~~~~~v~~vl~~-~~~fs~r~~~~~~~~~~ 83 (428)
T 1cpt_A 8 PEH--IARTVILPQGYADDEVIYPAFKWLRD-EQPLAMAHIEGYDPMWIATKHADVMQIGKQ-PGLFSNAEGSEILYDQN 83 (428)
T ss_dssp CHH--HHHHHHSSGGGGCHHHHHHHHHHHHH-HCSEEEECCTTSCCEEEECSHHHHHHHHHC-TTTEESSSSCSSCCCHH
T ss_pred chh--hhcccCChhhhcccCCccHHHHHHHH-hCCeeeccccCCCCeEEEccHHHHHHHHcC-chhccCccccccCCccc
Confidence 555 899876652 1 346788888876 799999998 89999999999999999965 468999986 3221
Q ss_pred h-h-h---hc----CCCceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH-------------------HHH-HHH
Q 048376 72 Q-I-I---SY----NYRDIVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK-------------------SKI-YSL 122 (221)
Q Consensus 72 ~-~-~---~~----~~~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~-------------------~~~-~~~ 122 (221)
. . + .. .+.++++. +|+.|+++||++ .+.|+.+.++.+.+.+++ ..+ ..+
T Consensus 84 ~~~~~~~~~g~~~~~~~~l~~~-~g~~~~~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~d~~~~~~~~~ 161 (428)
T 1cpt_A 84 NEAFMRSISGGCPHVIDSLTSM-DPPTHTAYRGLT-LNWFQPASIRKLEENIRRIAQASVQRLLDFDGECDFMTDCALYY 161 (428)
T ss_dssp HHHHHHHHTTTSSCSSCCGGGC-CTTHHHHHHHHH-HTTSSHHHHGGGHHHHHHHHHHHHHHHHTSSSEEEHHHHTTTTH
T ss_pred ccchhccccccccccccccccC-ChHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeehHHHHHhhh
Confidence 1 1 2 10 12345444 699999999997 578998888877665543 233 358
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 048376 123 MYGITSRAAFGNRSRDQEAFASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKAT 202 (221)
Q Consensus 123 ~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 202 (221)
+++||+.+ ||.+++..+.+......+.... ......+|++.++ .+...++..+..+.+.+++.+.|++++++
T Consensus 162 ~~~vi~~~-fG~~~~~~~~~~~~~~~~~~~~--~~~~~~~P~l~~~--~~~~~~~~~~~~~~~~~~~~~~i~~r~~~--- 233 (428)
T 1cpt_A 162 PLHVVMTA-LGVPEDDEPLMLKLTQDFFGVH--EPDEQAVAAPRQS--ADEAARRFHETIATFYDYFNGFTVDRRSC--- 233 (428)
T ss_dssp HHHHHHHH-HTCCGGGHHHHHHHHHTTTCC--------------------CHHHHHHHHHHHHHHHHHHHHHHHTTS---
T ss_pred HHHHHHHH-cCCCHhHHHHHHHHHHHHHhcc--ccccccccccccc--chhhHHHHHHHHHHHHHHHHHHHHHHHcC---
Confidence 99999999 9998765444444333221111 0112244555432 12333556677788888999988887641
Q ss_pred hhhccCCCCCcHHHHhhc
Q 048376 203 LKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 203 ~~~~~~~~~~d~ld~ll~ 220 (221)
...|+++.|++
T Consensus 234 -------~~~dll~~ll~ 244 (428)
T 1cpt_A 234 -------PKDDVMSLLAN 244 (428)
T ss_dssp -------CCSSHHHHHHH
T ss_pred -------CCCcHHHHHHh
Confidence 24688888874
No 29
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A*
Probab=99.77 E-value=1.7e-19 Score=152.89 Aligned_cols=132 Identities=15% Similarity=0.181 Sum_probs=90.5
Q ss_pred CcccccccccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCC-CccCCCCCCchhhhhhcCCCcee
Q 048376 4 LPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHD-VVFASRPHFPPAQIISYNYRDIV 82 (221)
Q Consensus 4 ~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~-~~f~~Rp~~~~~~~~~~~~~~~~ 82 (221)
+|+|||++++ ..+++..+.+|+++||+||++++|+.++|||+||+++++++.++. ..|..++.. ...... +.+++
T Consensus 22 ~P~iG~~~~~-~~~~~~~~~~~~~kyG~i~~~~~g~~~~vvv~dp~~~~~il~~~~~~~~~~~~~~-~~~~~~--g~~~~ 97 (491)
T 3dax_A 22 IPYLGCALQF-GANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFA-TSAKAF--GHRSI 97 (491)
T ss_dssp ESCTTTTGGG-TCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGTHHHHSCCTTEESSHHHHH-HHHHHH--TCCCC
T ss_pred ccchhhHHHH-hhCHHHHHHHHHHhcCCeEEEEECCeEEEEEcChHHHHHHHcCCccCChHHHHHH-HHHHHc--CCCcc
Confidence 8999999999 567888999999999999999999999999999999999997654 233332211 111121 23433
Q ss_pred eCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH-------------------------HHHHHHHHHHHHHHHhCCCCC
Q 048376 83 FSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK-------------------------SKIYSLMYGITSRAAFGNRSR 137 (221)
Q Consensus 83 ~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~-------------------------~~~~~~~~~vi~~~~fG~~~~ 137 (221)
...+|+.|+++|+.+. ..|+...++.+...+.+ ..+...++++++.++||.+++
T Consensus 98 ~~~~g~~w~~~r~~~~-~~f~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~fG~~~~ 176 (491)
T 3dax_A 98 DPMDGNTTENINDTFI-KTLQGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVMFEAGYLTIFGRDLT 176 (491)
T ss_dssp CGGGTSBCCCHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHC----------CCEEEEHHHHHHHHHHHHHHHHHHCBCST
T ss_pred cccchhHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHHHHHhhccCCcCCCCceeccHHHHHHHHHHHHhHHHHcCcccc
Confidence 1335889999999865 45666555544322111 234455566666677998876
Q ss_pred Chh
Q 048376 138 DQE 140 (221)
Q Consensus 138 ~~~ 140 (221)
.++
T Consensus 177 ~~~ 179 (491)
T 3dax_A 177 RRD 179 (491)
T ss_dssp TGG
T ss_pred ccc
Confidence 543
No 30
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR, atomic resolutio structural genomics/proteomics initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum} SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A* 1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A* 1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Probab=99.76 E-value=2.6e-17 Score=136.52 Aligned_cols=183 Identities=13% Similarity=0.113 Sum_probs=121.8
Q ss_pred CCCCcccccccccCCCCccHHHHHHHhhcCCceEEEcC-CcCEEEeccHHHHHHHHHhCC-CccCCCCCCchhhh----h
Q 048376 1 PWKLPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG-QVPAIIVSSPQVAKEVMKTHD-VVFASRPHFPPAQI----I 74 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g-~~~~vvv~~~~~ike~l~~~~-~~f~~Rp~~~~~~~----~ 74 (221)
|+++|++||+++ +|+..+.+|. +||||++++++ +.+.+||+++++|+++|.++. ..+++||..+.... .
T Consensus 6 p~~~P~~g~~~~----~p~~~~~~l~-~~Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~~~~~~~~r~~~~~~~~~~~~~ 80 (404)
T 1jfb_A 6 APSFPFSRASGP----EPPAEFAKLR-ATNPVSQVKLFDGSLAWLVTKHKDVCFVATSEKLSKVRTRQGFPELSASGKQA 80 (404)
T ss_dssp CCBSSCCCSSTT----SCCTHHHHHH-HHCSEEEEECTTSCEEEEECSHHHHHHHHHCTTEECCTTSTTCCCCSHHHHHH
T ss_pred CCCCCCCCCcCC----CccHHHHHHH-HhCCeeeeecCCCCceEEEecHHHHHHHHcCCcccccccccCCccccccccch
Confidence 567999999876 5688899996 59999999874 566778999999999998763 45667775433221 1
Q ss_pred hcCCCceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH----------------------HHHHHHHHHHHHHHHh
Q 048376 75 SYNYRDIVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK----------------------SKIYSLMYGITSRAAF 132 (221)
Q Consensus 75 ~~~~~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~----------------------~~~~~~~~~vi~~~~f 132 (221)
..++.++++. +|+.|+++||++ .+.|+.+.++.+.+.+++ ..+...+.++|+..+|
T Consensus 81 ~~~~~~l~~~-~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~d~~~~~~~~~~~~i~~~~~ 158 (404)
T 1jfb_A 81 AKAKPTFVDM-DPPEHMHQRSMV-EPTFTPEAVKNLQPYIQRTVDDLLEQMKQKGCANGPVDLVKEFALPVPSYIIYTLL 158 (404)
T ss_dssp TTSCCCGGGC-CTTHHHHHHTTT-GGGGSHHHHHHHHHHHHHHHHHHHHHHHHHCSTTSCEEHHHHTTTHHHHHHHHHHH
T ss_pred hcccCccccc-CchhHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHc
Confidence 1222344444 699999999996 578998888777655543 2334456678888899
Q ss_pred CCCCCChhHHHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCC
Q 048376 133 GNRSRDQEAFASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDE 212 (221)
Q Consensus 133 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 212 (221)
|.+++..+ +.......+ ..+. +..++..+..+.+.+++.+.|++++++ ...
T Consensus 159 G~~~~~~~-~~~~~~~~~-----------~~~~-------~~~~~~~~~~~~~~~~~~~~i~~r~~~----------~~~ 209 (404)
T 1jfb_A 159 GVPFNDLE-YLTQQNAIR-----------TNGS-------STAREASAANQELLDYLAILVEQRLVE----------PKD 209 (404)
T ss_dssp TCCGGGHH-HHHHHHHHH-----------HCTT-------SCHHHHHHHHHHHHHHHHHHHHHHHHS----------CCS
T ss_pred CCCHHHHH-HHHHHHHHH-----------hccC-------cchHHHHHHHHHHHHHHHHHHHHHHhC----------CCC
Confidence 98775322 222211110 0000 112344566777888888888887652 246
Q ss_pred cHHHHhh
Q 048376 213 DLVDVLL 219 (221)
Q Consensus 213 d~ld~ll 219 (221)
|+++.|+
T Consensus 210 d~l~~ll 216 (404)
T 1jfb_A 210 DIISKLC 216 (404)
T ss_dssp SHHHHHH
T ss_pred cHHHHHH
Confidence 8888876
No 31
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes teichomyceticus} SCOP: a.104.1.0 PDB: 3o1a_A*
Probab=99.75 E-value=5.3e-17 Score=133.77 Aligned_cols=172 Identities=13% Similarity=0.137 Sum_probs=119.4
Q ss_pred CCCccHHHHHHHhhcCCceEEEcCC----cCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCCCceeeCCCChHH
Q 048376 15 GSLPHHRLRDLTNKYGPLMLLQLGQ----VPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNYRDIVFSPYGDSW 90 (221)
Q Consensus 15 ~~~~~~~~~~~~~~YG~i~~l~~g~----~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~W 90 (221)
..+|+..+.+| ++||||+++++|+ +++|+|+||++++++| ++.+.|++||......... ...+.++..+|+.|
T Consensus 11 ~~~p~~~~~~l-r~yGpv~~~~~~~~~~g~~~vvv~~~~~v~~vl-~~~~~f~~~~~~~~~~~~~-~~~~~~~~~~g~~~ 87 (384)
T 3oo3_A 11 RLDPVPEFEEL-QKAGPLHEYDTEPGMDGRKQWLVTGHDEVRAIL-ADHERFSSMRPVDDEADRA-LLPGILQAYDPPDH 87 (384)
T ss_dssp TTEECHHHHHH-HHTCSEECCCCC------CEEEECCHHHHHHHH-HCTTTEECSCCCC-----C-CCTTCGGGCCTTHH
T ss_pred ccChhHHHHHH-HhcCCeeecccccccCCCCEEEEcCHHHHHHHH-hCchhccCCcccccccccc-ccccccccCCChhH
Confidence 45788999999 6999999999987 9999999999999999 6668999998654322211 12233445579999
Q ss_pred HHHHHHHHHhhcCHHHHHHhHHHHHH-------------------HHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHH
Q 048376 91 KQLRKICVSELLSAKRVQSFQSIREK-------------------SKIYSLMYGITSRAAFGNRSRDQEAFASVRGEITK 151 (221)
Q Consensus 91 k~~Rr~~~~~~~~~~~~~~~~~i~~~-------------------~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~ 151 (221)
+++||++ .+.|+.+.++.+.+.+++ ..+...+.++++..+||...+..+.+...+..++.
T Consensus 88 ~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~d~~~~~~~~~~~~v~~~~~G~~~~~~~~~~~~~~~~~~ 166 (384)
T 3oo3_A 88 TRLRRTV-APAYSARRMERLRPRIEEIVEECLDDFESVGAPVDFVRHAAWPIPAYIACEFLGVPRDDQAELSRMIRESRE 166 (384)
T ss_dssp HHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHHSCSSEEHHHHTTTHHHHHHHHHHHTCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 9999996 578998888777655543 34445566666777899887655555555444332
Q ss_pred HcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 152 LMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 152 ~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
.+ ..++..+....+.+++.+.++++++. ...|+++.|++
T Consensus 167 ----------~~----------~~~~~~~~~~~~~~~~~~~i~~~~~~----------~~~d~l~~ll~ 205 (384)
T 3oo3_A 167 ----------SR----------LPRQRTLSGLGIVNYTKRLTSGKRRD----------PGDGMIGVIVR 205 (384)
T ss_dssp ----------CS----------CHHHHHHHHHHHHHHHHHHHHHHHHS----------CCSSHHHHHHH
T ss_pred ----------cC----------ChHHHHHHHHHHHHHHHHHHHHHHhC----------CCCCHHHHHHH
Confidence 01 12344566777888888888877642 24789998874
No 32
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A*
Probab=99.73 E-value=6.6e-18 Score=143.45 Aligned_cols=131 Identities=12% Similarity=0.107 Sum_probs=86.4
Q ss_pred CCC-CcccccccccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCc-hhhhhhcCC
Q 048376 1 PWK-LPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFP-PAQIISYNY 78 (221)
Q Consensus 1 P~~-~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~-~~~~~~~~~ 78 (221)
|+| +|+|||++++ ..+++..+.+|+++|||||++++|++++|||+||+++++++.++...|+.++... ..... . +
T Consensus 23 p~~~~P~iG~~~~~-~~~~~~~~~~l~~kYG~i~~v~lg~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~~~~~~-~-g 99 (498)
T 3b6h_A 23 DLGSIPWLGYALDF-GKDAASFLTRMKEKHGDIFTILVGGRYVTVLLDPHSYDAVVWEPRTRLDFHAYAIFLMERI-F-D 99 (498)
T ss_dssp ECCSSTTTBTHHHH-HHCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHTCCTTTEECCHHHHHHHHHT-S-C
T ss_pred CCCCCcchhhHHHh-ccCHHHHHHHHHHHcCCeEEEEECCeeEEEEcCHHHHHHHHhCccccCCchhhHHHHHHHH-c-C
Confidence 446 8999999998 4567899999999999999999999999999999999999987665355554211 11111 1 3
Q ss_pred CceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHH-H----------------------HHHHHHHHHHHHHHHhCCC
Q 048376 79 RDIVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIRE-K----------------------SKIYSLMYGITSRAAFGNR 135 (221)
Q Consensus 79 ~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~-~----------------------~~~~~~~~~vi~~~~fG~~ 135 (221)
.+++ ..+|+.|+ +++ ...|+...++.+...+. + ..+...++++++.++||.+
T Consensus 100 ~~~~-~~~~~~~r---r~~-~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vi~~~~~~~~fG~~ 174 (498)
T 3b6h_A 100 VQLP-HYSPSDEK---ARM-KLTLLHRELQALTEAMYTNLHAVLLGDATEAGSGWHEMGLLDFSYSFLLRAGYLTLYGIE 174 (498)
T ss_dssp CCCT-TCCHHHHH---HHH-HTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEHHHHHHHHHHHHHHHHHHCBS
T ss_pred CCcc-ccCHHHHH---HHH-HHhhchHhHHHHHHHHHHHHHHHHhhcccccCCCcceecHHHHHHHHHHHHHHHhhcCcc
Confidence 3433 33577775 443 34566555554421111 1 2334445555555669988
Q ss_pred CCCh
Q 048376 136 SRDQ 139 (221)
Q Consensus 136 ~~~~ 139 (221)
++.+
T Consensus 175 ~~~~ 178 (498)
T 3b6h_A 175 ALPR 178 (498)
T ss_dssp CSSC
T ss_pred cccc
Confidence 7543
No 33
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A {Amycolatopsis orientalis} SCOP: a.104.1.1
Probab=99.73 E-value=1e-16 Score=133.13 Aligned_cols=180 Identities=16% Similarity=0.200 Sum_probs=119.2
Q ss_pred CCCCcccccccccCCCCccHHHHHHHhhcCCceEEE----c-CC-cCEEEeccHHHHHHHHHhCCCccCCCCCCchhh-h
Q 048376 1 PWKLPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQ----L-GQ-VPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQ-I 73 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~----~-g~-~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~-~ 73 (221)
|+++|+. + ..+++..+.+| ++||||++++ + |+ +++|+|+||++++++|+++. .|++||...... .
T Consensus 15 p~~~p~~-----~-~~~p~~~~~~l-~~yGpv~~~~~~~~~~~~~~~~vvv~~~~~i~~vl~~~~-~~~~~~~~~~~~~~ 86 (406)
T 1ued_A 15 PANFQLR-----T-NCDPHEDNFGL-RAHGPLVRIVGESSTQLGRDFVWQAHGYEVVRRILGDHE-HFTTRPQFTQSKSG 86 (406)
T ss_dssp CTTTTCE-----E-TTEECHHHHHH-HTTCSEEEEESHHHHHTTSSCEEEECSHHHHHHHHHCCS-SEECCCCC------
T ss_pred CcccCCC-----C-CCCcHHHHHHH-HHhCCeeeecccccCCCCCccEEEEcCHHHHHHHHhhCc-cccccccccccccc
Confidence 5678876 4 45788999999 9999999999 7 88 99999999999999994333 477777521110 1
Q ss_pred hhc---CCCceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH-------------------HHHH-HHHHHHHHHH
Q 048376 74 ISY---NYRDIVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK-------------------SKIY-SLMYGITSRA 130 (221)
Q Consensus 74 ~~~---~~~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~-------------------~~~~-~~~~~vi~~~ 130 (221)
+.. .+.++++ .+|+.|+++||++ .+.|+...++.+.+.+++ ..+. .++.++|+ .
T Consensus 87 ~~~~~~~~~~l~~-~~g~~~~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~g~~~d~~~~~~~~~~~~vi~-~ 163 (406)
T 1ued_A 87 AHVEAQFVGQIST-YDPPEHTRLRKML-TPEFTVRRIRRMEPAIQSLIDDRLDLLEAEGPSADLQGLFADPVGAHALC-E 163 (406)
T ss_dssp ---CGGGTTCGGG-CCTTHHHHHHHHH-GGGSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEHHHHTHHHHHHHHHH-H
T ss_pred ccccccccccccc-CCCHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeHHHHHHHHhHHHHHH-H
Confidence 110 1235544 4799999999996 578888877776654443 3344 48899998 4
Q ss_pred HhCCCCCChhHHHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCC
Q 048376 131 AFGNRSRDQEAFASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGD 210 (221)
Q Consensus 131 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 210 (221)
+||.+.+..+.+......++. . . . ..++..+..+.+.+++.+.|+++++. .
T Consensus 164 ~~G~~~~~~~~~~~~~~~~~~---------~--~---~-----~~~~~~~~~~~~~~~~~~~i~~r~~~----------~ 214 (406)
T 1ued_A 164 LLGIPRDDQREFVRRIRRNAD---------L--S---R-----GLKARAADSAAFNRYLDNLLARQRAD----------P 214 (406)
T ss_dssp HHTCCHHHHHHHHHHHHHCC-----------------C-----CHHHHHHHHHHHHHHHHHHHHHHHHS----------C
T ss_pred HcCCCHHHHHHHHHHHHHHHh---------c--c---C-----CHHHHHHHHHHHHHHHHHHHHHHHhC----------C
Confidence 799875433333333322111 0 0 0 01345566777888889988887652 2
Q ss_pred CCcHHHHhhc
Q 048376 211 DEDLVDVLLK 220 (221)
Q Consensus 211 ~~d~ld~ll~ 220 (221)
..|+++.|++
T Consensus 215 ~~d~l~~ll~ 224 (406)
T 1ued_A 215 DDGLLGMIVR 224 (406)
T ss_dssp CSSHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 4789988874
No 34
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.50A {Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A* 3cv9_A*
Probab=99.72 E-value=2.5e-16 Score=130.99 Aligned_cols=183 Identities=13% Similarity=0.142 Sum_probs=122.4
Q ss_pred CCCCcccccccccCCCCccHHHHHHHhhc-CCceEEEc-CCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhh-----
Q 048376 1 PWKLPLIGNLHQLAGSLPHHRLRDLTNKY-GPLMLLQL-GQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQI----- 73 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~~~~~~~~~~~Y-G~i~~l~~-g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~----- 73 (221)
|+++|.+..-..+ ..+++..+.+| ++| |||+++++ |+.++|||+|+++|+++|.++ .|++++..+....
T Consensus 10 ~~~~P~~~~~~~~-~~~p~~~~~~l-~~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~~~~~~~~~~~~~~~~~~ 85 (412)
T 2zbx_A 10 TTDAPAFPSNRSC-PYQLPDGYAQL-RDTPGPLHRVTLYDGRQAWVVTKHEAARKLLGDP--RLSSNRTDDNFPATSPRF 85 (412)
T ss_dssp CCSSCBSSCCCSS-TTSCCHHHHHH-HHSSSSEEEEECTTSCEEEEECSHHHHHHHHTCT--TEECCTTSTTSCCCSGGG
T ss_pred CCCCCCCCCCchh-ccChHHHHHHH-HhcCCCeEeeccCCCCcEEEEecHHHHHHHHcCc--ccccCccccccccccccc
Confidence 4567766333334 56789999999 788 99999998 999999999999999999865 3666664211111
Q ss_pred --hhcCCCceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH-------------------HHHH-HHHHHHHHHHH
Q 048376 74 --ISYNYRDIVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK-------------------SKIY-SLMYGITSRAA 131 (221)
Q Consensus 74 --~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~-------------------~~~~-~~~~~vi~~~~ 131 (221)
....+.++++ .+|+.|+++||++ .+.|+.+.++.+.+++++ ..+. .++.+||+. +
T Consensus 86 ~~~~~~~~~l~~-~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~g~~~d~~~~~~~~~~~~vi~~-~ 162 (412)
T 2zbx_A 86 EAVRESPQAFIG-LDPPEHGTRRRMT-ISEFTVKRIKGMRPEVEEVVHGFLDEMLAAGPTADLVSQFALPVPSMVICR-L 162 (412)
T ss_dssp C----CCCCGGG-CCTTHHHHHHTTT-GGGGSHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEHHHHTTTHHHHHHHHH-H
T ss_pred cccccccccccc-CCcHHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-H
Confidence 1001234444 4799999999997 467888877777655443 2333 477888886 6
Q ss_pred hCCCCCChhHHHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCC
Q 048376 132 FGNRSRDQEAFASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDD 211 (221)
Q Consensus 132 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 211 (221)
||.+.+..+.+...+..++.. + . . ++..+..+.+.+++.+.|++++++ ..
T Consensus 163 ~G~~~~~~~~~~~~~~~~~~~----------~--------~-~-~~~~~~~~~~~~~~~~~i~~r~~~----------~~ 212 (412)
T 2zbx_A 163 LGVPYADHEFFQDASKRLVQS----------T--------D-A-QSALTARNDLAGYLDGLITQFQTE----------PG 212 (412)
T ss_dssp HTCCGGGHHHHHHHHHHHHHC----------S--------S-H-HHHHHHHHHHHHHHHHHHHHHHHS----------CC
T ss_pred cCCCHHHHHHHHHHHHHHhcc----------C--------c-H-HHHHHHHHHHHHHHHHHHHHHHhC----------CC
Confidence 998876544554444333220 0 0 1 344566777888888888887653 13
Q ss_pred CcHHHHhhc
Q 048376 212 EDLVDVLLK 220 (221)
Q Consensus 212 ~d~ld~ll~ 220 (221)
.|+++.|++
T Consensus 213 ~d~l~~ll~ 221 (412)
T 2zbx_A 213 AGLVGALVA 221 (412)
T ss_dssp SSHHHHHHH
T ss_pred CCHHHHHHH
Confidence 678887764
No 35
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus subtilis} SCOP: a.104.1.0 PDB: 3ejd_B* 3eje_B*
Probab=99.72 E-value=2.5e-16 Score=130.53 Aligned_cols=176 Identities=15% Similarity=0.218 Sum_probs=122.8
Q ss_pred CCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchh---hhh-hcCCCceeeCCCChHHH
Q 048376 16 SLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPA---QII-SYNYRDIVFSPYGDSWK 91 (221)
Q Consensus 16 ~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~---~~~-~~~~~~~~~~~~g~~Wk 91 (221)
.+++..+.+| ++||||+++++|+.+++||+++++|+++|.++ +.|++||..... ..+ ...+.++++ .+|+.|+
T Consensus 13 ~~p~~~~~~~-r~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~~h~ 89 (404)
T 3ejb_B 13 KNPYSFYDTL-RAVHPIYKGSFLKYPGWYVTGYEETAAILKDA-RFKVRTPLPESSTKYQDLSHVQNQMMLF-QNQPDHR 89 (404)
T ss_dssp HCHHHHHHHH-HHHCSEEEEEETTEEEEEECCHHHHHHHHHCT-TEECCCSSCTTCCTTHHHHHHHHTSGGG-CCTTHHH
T ss_pred cCchHHHHHH-HhhCCEeeccCCCCCEEEEecHHHHHHHHhCc-ccccCcccccccccccchhhhhhcchhh-cCCchHH
Confidence 4678888888 68999999999999999999999999999977 689999853221 111 111345544 4699999
Q ss_pred HHHHHHHHhhcCHHHHHHhHHHHHH-------------------HHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHH
Q 048376 92 QLRKICVSELLSAKRVQSFQSIREK-------------------SKIYSLMYGITSRAAFGNRSRDQEAFASVRGEITKL 152 (221)
Q Consensus 92 ~~Rr~~~~~~~~~~~~~~~~~i~~~-------------------~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~ 152 (221)
++||++ .+.|+++.++.+.+.+++ +....++.++|+.+ ||...+..+.+......+...
T Consensus 90 ~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~d~~~~~~~~~~~~vi~~~-~G~~~~~~~~~~~~~~~~~~~ 167 (404)
T 3ejb_B 90 RLRTLA-SGAFTPRTTESYQPYIIETVHHLLDQVQGKKKMEVISDFAFPLASFVIANI-IGVPEEDREQLKEWAASLIQT 167 (404)
T ss_dssp HHHHHH-HGGGSHHHHHTTHHHHHHHHHHHHHTTTTTSEEEHHHHTHHHHHHHHHHHH-HTCCGGGHHHHHHHHHHHHGG
T ss_pred HHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHh
Confidence 999997 578998888877665544 23345788999985 898876555554444433222
Q ss_pred cCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhh
Q 048376 153 MSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLL 219 (221)
Q Consensus 153 ~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll 219 (221)
.. .|.. ....++..+....+.+++.+.++++++. ...|+++.|+
T Consensus 168 ~~-------~p~~------~~~~~~~~~~~~~~~~~~~~~i~~r~~~----------~~~d~l~~ll 211 (404)
T 3ejb_B 168 ID-------FTRS------RKALTEGNIMAVQAMAYFKELIQKRKRH----------PQQDMISMLL 211 (404)
T ss_dssp GS-------TTCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHS----------CCSSHHHHHH
T ss_pred cc-------CCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CcchHHHHHH
Confidence 11 1321 1123455667788888999988888741 3578888876
No 36
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding; HET: HEM; 2.30A {Streptomyces avermitilis}
Probab=99.72 E-value=8.2e-17 Score=133.75 Aligned_cols=183 Identities=11% Similarity=0.118 Sum_probs=116.9
Q ss_pred CCCCcccccccccCCCCccHHHHHHHhhcCCceEEEc-CCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhh---hhc
Q 048376 1 PWKLPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQL-GQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQI---ISY 76 (221)
Q Consensus 1 P~~~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~-g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~---~~~ 76 (221)
|+++|.+.-...+ ..+++..+.+| ++||||+++++ |+.++|||+||++++++|.++ .|++++..+.... +..
T Consensus 10 ~~~~p~~p~~~~~-~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~~~~~~~~~~~~~~~~~~~ 85 (408)
T 3abb_A 10 GSPAPSFPQDRTC-PYQPPKAYEER-RGESPLTQVTLFDGRPAWLITGHAEGRALLVDP--RLSSDWGHPDFPVVVRRTE 85 (408)
T ss_dssp -CCSCCCCCCCSS-TTSCCHHHHHH-CCSSSEEEEECTTSCEEEEECCHHHHHHHHTCT--TEECCTTSTTCCCCC----
T ss_pred CCCCCCCCCCccc-ccCchHHHHHH-HhcCCeeeeecCCCCcEEEEeCHHHHHHHHcCC--CcccccccccccccccCCc
Confidence 3456654333445 56789999999 99999999998 999999999999999999875 3666653111111 110
Q ss_pred ----CCCceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH-------------------HHHH-HHHHHHHHHHHh
Q 048376 77 ----NYRDIVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK-------------------SKIY-SLMYGITSRAAF 132 (221)
Q Consensus 77 ----~~~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~-------------------~~~~-~~~~~vi~~~~f 132 (221)
.+.++++ .+|+.|+++||++ .+.|+...++.+.+++++ ..+. .++.+||+. +|
T Consensus 86 ~~~~~~~~l~~-~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~g~~~d~~~~~~~~~~~~vi~~-~~ 162 (408)
T 3abb_A 86 DRGGLAFPLIG-VDDPVHARQRRML-IPSFGVKRMNAIRPRLQSLVDRLLDDMLAKGPGADLVSAFALPVPSVAICE-LL 162 (408)
T ss_dssp -----CCTTTT-CCTTHHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHHTCSCEEHHHHTTTHHHHHHHHH-HH
T ss_pred ccccccccccc-CCchHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHH-Hh
Confidence 1234444 5799999999996 577888877777655443 2333 477888887 79
Q ss_pred CCCCCChhHHHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCC
Q 048376 133 GNRSRDQEAFASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDE 212 (221)
Q Consensus 133 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 212 (221)
|.+++..+.+...+..++... .| ++..+..+.+.+++.+.|++++++ ...
T Consensus 163 G~~~~~~~~~~~~~~~~~~~~--------~~------------~~~~~~~~~~~~~~~~~i~~r~~~----------~~~ 212 (408)
T 3abb_A 163 GVPYGDHDFFEECSRNFVGAA--------TS------------AEADAAFGELYTYLHGLVGRKQAE----------PED 212 (408)
T ss_dssp TCCGGGHHHHHHHHHHHC--------------------------CCSSHHHHHHHHHHHHHHHHHHS----------CCS
T ss_pred CCCHHHHHHHHHHHHHHhccc--------ch------------HHHHHHHHHHHHHHHHHHHHHHhC----------CCC
Confidence 988765444544443321100 01 112234556677778888777652 136
Q ss_pred cHHHHhhc
Q 048376 213 DLVDVLLK 220 (221)
Q Consensus 213 d~ld~ll~ 220 (221)
|+++.|+.
T Consensus 213 d~l~~ll~ 220 (408)
T 3abb_A 213 GLLDELIA 220 (408)
T ss_dssp SHHHHHHH
T ss_pred CHHHHHHh
Confidence 78877763
No 37
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM EDO; 1.37A {Citrobacter braakii} PDB: 4fmx_A* 4fyz_A* 1t2b_A* 3bdz_A* 3be0_A*
Probab=99.72 E-value=1.5e-16 Score=131.78 Aligned_cols=171 Identities=12% Similarity=0.155 Sum_probs=122.3
Q ss_pred CCCccHHHHHHHhhc--CCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCCCceeeCCCChHHHH
Q 048376 15 GSLPHHRLRDLTNKY--GPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNYRDIVFSPYGDSWKQ 92 (221)
Q Consensus 15 ~~~~~~~~~~~~~~Y--G~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~ 92 (221)
..+++..+.+|.++| |||+++++|+ +++||+|+++|+++| ++.+.|++||......... .+...++..+|+.|++
T Consensus 18 ~~~p~~~~~~l~~~Y~~Gpv~~~~~~~-~~~vv~~~~~v~~vl-~~~~~f~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~ 94 (398)
T 4fb2_A 18 DGTPHAFFEALRDEAETTPIGWSEAYG-GHWVVAGYKEIQAVI-QNTKAFSNKGVTFPRYETG-EFELMMAGQDDPVHKK 94 (398)
T ss_dssp TSSSHHHHHHHHHHHTTCSEEEECGGG-CEEEECSHHHHHHHH-TCCSSEEGGGCSSSCC-----CCCTTTTCCTTHHHH
T ss_pred hcChhHHHHHHHhcCCCCCeEEecCCC-CEEEEccHHHHHHHH-hChhhccCCcccccCCCCc-ccccCcccCCchHHHH
Confidence 457899999999999 9999999986 699999999999999 6677999998654322221 1223334567999999
Q ss_pred HHHHHHHhhcCHHHHHHhHHHHHH-------------------HHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHc
Q 048376 93 LRKICVSELLSAKRVQSFQSIREK-------------------SKIYSLMYGITSRAAFGNRSRDQEAFASVRGEITKLM 153 (221)
Q Consensus 93 ~Rr~~~~~~~~~~~~~~~~~i~~~-------------------~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~ 153 (221)
+||++ .+.|+.+.++.+.+.+++ .....++.++|+. +||...+..+.+......++.
T Consensus 95 ~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~~~~~~~~~~~~~~-- 170 (398)
T 4fb2_A 95 YRQLV-AKPFSPEATDLFTEQLRQSTNDLIDARIELGEGDAATWLANEIPARLTAI-LLGLPPEDGDTYRRWVWAITH-- 170 (398)
T ss_dssp HHHHH-HTTTCHHHHHTTHHHHHHHHHHHHHTTTTTTEEEHCCCCCTTHHHHHHHH-HTTSCGGGHHHHHHHHHHHHH--
T ss_pred HHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHhc--
Confidence 99996 578998888877665554 1234688999998 799876655555444444322
Q ss_pred CCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 154 SGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 154 ~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
|. ...+..+..+.+.+++.+.|+++++. ...|+++.|++
T Consensus 171 ---------~~---------~~~~~~~~~~~~~~~~~~~i~~r~~~----------~~~d~l~~ll~ 209 (398)
T 4fb2_A 171 ---------VE---------NPEEGAEIFAELVAHARTLIAERRTN----------PGNDIMSRVIM 209 (398)
T ss_dssp ---------CC---------CHHHHHHHHHHHHHHHHHHHHHHHHS----------CCSSHHHHHHH
T ss_pred ---------CC---------CHHHHHHHHHHHHHHHHHHHHHHHhC----------CCCCHHHHHHH
Confidence 11 01245567778888899999888762 24788888874
No 38
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans}
Probab=99.70 E-value=1.4e-16 Score=134.00 Aligned_cols=184 Identities=14% Similarity=0.133 Sum_probs=119.0
Q ss_pred ccHHHHHHHhhcCCce--EEE-cCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhc-------------CCCce
Q 048376 18 PHHRLRDLTNKYGPLM--LLQ-LGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISY-------------NYRDI 81 (221)
Q Consensus 18 ~~~~~~~~~~~YG~i~--~l~-~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~-------------~~~~~ 81 (221)
|+..+.++ ++||||+ +++ +|+.+++||+++++|+++|.+. +.|++||.......... .+.++
T Consensus 47 p~~~~~~l-r~~gPV~~~~~~~~g~~~~~vvt~~~~v~~vl~~~-~~fs~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~l 124 (450)
T 3tkt_A 47 LLDRFDAL-RAEAPVAKVVAPDDEHEPFWLVSSFDGVMKASKDN-ATFLNNPKSTVFTLRVGEMMAKAITGGSPHLVESL 124 (450)
T ss_dssp HHHHHHHH-HHHCSEEEECCTTCSSCCEEEECSHHHHHHHHHCT-TTEESSSSCSSCCCHHHHHHHHHHHTSCSCSSCCG
T ss_pred chHHHHHH-HhcCCeecccccCCCCCCEEEEecHHHHHHHHhCc-ccccCCCccccccccccccccccccccccccccCc
Confidence 66777778 7899999 998 8999999999999999999655 78999986433111100 11243
Q ss_pred eeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH-------------------HHH-HHHHHHHHHHHHhCCCCCChhH
Q 048376 82 VFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK-------------------SKI-YSLMYGITSRAAFGNRSRDQEA 141 (221)
Q Consensus 82 ~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~-------------------~~~-~~~~~~vi~~~~fG~~~~~~~~ 141 (221)
+..+|+.|+++||++ .+.|+++.++.+.+.+++ ..+ ..++++||+++ ||...+..+.
T Consensus 125 -~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~~dl~~~~~~~~~~~vi~~l-~G~~~~~~~~ 201 (450)
T 3tkt_A 125 -VQMDAPKHPKLRRLT-QDWFMPKNLARLDGEIRKIANEAIDRMLGAGEEGDFMALVAAPYPLHVVMQI-LGVPPEDEPK 201 (450)
T ss_dssp -GGCCTTHHHHHHHHH-HTTTSHHHHGGGHHHHHHHHHHHHHHHHHTCSEEEHHHHTTTHHHHHHHHHH-TTCCGGGHHH
T ss_pred -ccCCCHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEeeHHHHHHHHHHHHHHHH-cCCChhHHHH
Confidence 445799999999996 588998888877655443 334 57899999996 9987654444
Q ss_pred HHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 142 FASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
+......+. .... ..++|++.++.......++..+....+.+++.+.|++++++ ...|+++.|++
T Consensus 202 ~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~----------~~~dll~~ll~ 266 (450)
T 3tkt_A 202 MLFLTQQMF---GGQD-EDMNKSGLKDLPPEQISQIVAGAVAEFERYFAGLAAERRRN----------PTDDVATVIAN 266 (450)
T ss_dssp HHHHHHTTS---CCC-----------------HHHHHHHHHHHHHHHHHHHHHHHHHS----------CCSSHHHHHHT
T ss_pred HHHHHHHHh---cccc-chhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCCCHHHHHHh
Confidence 444333321 1111 12233333221112234566677788889999999888752 24688888875
No 39
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET: HEM; 2.90A {Streptomyces coelicolor} PDB: 4fxb_A*
Probab=99.70 E-value=6.1e-16 Score=128.86 Aligned_cols=171 Identities=13% Similarity=0.186 Sum_probs=118.7
Q ss_pred CCCccHHHHHHHhhcCCceEEEcC-CcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhh-------cCCCceeeCCC
Q 048376 15 GSLPHHRLRDLTNKYGPLMLLQLG-QVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIIS-------YNYRDIVFSPY 86 (221)
Q Consensus 15 ~~~~~~~~~~~~~~YG~i~~l~~g-~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~-------~~~~~~~~~~~ 86 (221)
..+++..+.+|.++ |||+++++| +.+++||+|+++|+++|.++ .|++|+..+...... ..+.+++. .+
T Consensus 28 ~~dp~~~~~~l~~~-Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~d 103 (417)
T 3tyw_A 28 PFAAPAEYAALRTD-DPVARVTLPTRREAWVVTRYDDVRELLSDP--RVSADIRRPGFPALGEGEQEAGARFRPFIR-TD 103 (417)
T ss_dssp TTSCCTHHHHHHHT-CTEEEEECTTSCEEEEECCHHHHHHHHHCT--TEECCSSSTTCCCSSTTTSTTSSSCCCGGG-CC
T ss_pred ccCchHHHHHHHhh-CCeeeeecCCCCCeEEEcCHHHHHHHHcCC--CcccCCccccccccccccccccccccchhh-cC
Confidence 45788999999998 999999997 48999999999999999876 788875322111111 12335444 46
Q ss_pred ChHHHHHHHHHHHhhcCHHHHHHhHHHHHH-------------------HHH-HHHHHHHHHHHHhCCCCCChhHHHHHH
Q 048376 87 GDSWKQLRKICVSELLSAKRVQSFQSIREK-------------------SKI-YSLMYGITSRAAFGNRSRDQEAFASVR 146 (221)
Q Consensus 87 g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~-------------------~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~ 146 (221)
|+.|+++||++ .+.|+.+.++.+.+.+++ ..+ ..++.+||+.+ ||.+++..+.+....
T Consensus 104 g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~g~~~d~~~~~~~~~~~~vi~~~-~G~~~~~~~~~~~~~ 181 (417)
T 3tyw_A 104 APEHTRYRRML-LPAFTVRRVRAMRPAVQARVDEILDGMLAAGGPVDLVSAYANAVSTSVICEL-LGIPRHDLEFFRDVT 181 (417)
T ss_dssp HHHHHHHHHHH-GGGGCHHHHHHTHHHHHHHHHHHHHHHHHHCSSEEHHHHTHHHHHHHHHHHH-HTCCTTTTTHHHHHH
T ss_pred CcHHHHHHHHH-HhhhCHHHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHH
Confidence 99999999996 578898887777655443 334 46788999987 999887655554444
Q ss_pred HHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 147 GEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 147 ~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
..+.. ..+. ..+..+..+.+.+++.+.|+++++. ...|+++.|++
T Consensus 182 ~~~~~---------~~~~----------~~~~~~~~~~l~~~~~~~i~~r~~~----------~~~d~l~~ll~ 226 (417)
T 3tyw_A 182 RISGS---------RNST----------AEQVSEALGGLFGLLGGLVAERREE----------PRDDLISKLVT 226 (417)
T ss_dssp HHHHS---------SSSC----------TTHHHHHHHHHHHHHHHHHHHHHSS----------CCSSHHHHHHH
T ss_pred HHHhc---------ccCC----------HHHHHHHHHHHHHHHHHHHHHHhhC----------CCCCHHHHHHH
Confidence 33211 1110 1234566677888888888887652 24688887763
No 40
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding, oxidoreductase, omega-hydroxylation, iron, heme, fatty acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium tuberculosis} PDB: 2wm4_A*
Probab=99.69 E-value=8.9e-16 Score=128.63 Aligned_cols=175 Identities=12% Similarity=0.152 Sum_probs=121.9
Q ss_pred CccHHHHHHHhhcCCceEEEcC-------CcCEEEeccHHHHHHHHHhCCCccCCCCCC--c-hhhhhhcCCCceeeCCC
Q 048376 17 LPHHRLRDLTNKYGPLMLLQLG-------QVPAIIVSSPQVAKEVMKTHDVVFASRPHF--P-PAQIISYNYRDIVFSPY 86 (221)
Q Consensus 17 ~~~~~~~~~~~~YG~i~~l~~g-------~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~--~-~~~~~~~~~~~~~~~~~ 86 (221)
+++..+.+|. +||||+++++| +.++|||+||++|+++|.++ +.|++||.. + ....+...+.++++. +
T Consensus 45 ~p~~~~~~l~-~~Gpv~~~~~~~~~~~~~g~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~-d 121 (435)
T 2wm5_A 45 VRDGAFATLR-REAPISFWPTIELPGFVAGNGHWALTKYDDVFYASRHP-DIFSSYPNITINDQTPELAEYFGSMIVL-D 121 (435)
T ss_dssp HHHHHHHHHH-HHCSEEEECCCCC---CCCCCEEEECSHHHHHHHHHCT-TTEECSSCCSSSCCCHHHHHHHHGGGGC-C
T ss_pred ChhHHHHHHH-hcCCeEecccccccccCCCCCeEEEcCHHHHHHHHcCc-ccccCccccccCccccchhhhccccccC-C
Confidence 4677888995 69999999986 67999999999999999975 579999842 1 222221113455555 6
Q ss_pred ChHHHHHHHHHHHhhcCHHHHHHhHHHHHH---------------------HHH-HHHHHHHHHHHHhCCCCCChhHHHH
Q 048376 87 GDSWKQLRKICVSELLSAKRVQSFQSIREK---------------------SKI-YSLMYGITSRAAFGNRSRDQEAFAS 144 (221)
Q Consensus 87 g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~---------------------~~~-~~~~~~vi~~~~fG~~~~~~~~~~~ 144 (221)
|+.|+++||++ .+.|++..++.+.+.+++ ..+ ..++++||+++ ||.+++..+.+..
T Consensus 122 g~~h~~~R~~l-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~~~vd~~~~~~~~~~~~vi~~~-~G~~~~~~~~~~~ 199 (435)
T 2wm5_A 122 DPRHQRLRSIV-SRAFTPKVVARIEAAVRDRAHRLVSSMIANNPDRQADLVSELAGPLPLQIICDM-MGIPKADHQRIFH 199 (435)
T ss_dssp TTHHHHHHHHH-HHTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEHHHHTTTHHHHHHHHHH-HTCCGGGHHHHHH
T ss_pred cHHHHHHHHHh-HHhhCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEehHHHHHHHHHHHHHHHH-cCCCHHHHHHHHH
Confidence 99999999997 577888777766554432 233 57899999999 9998876555655
Q ss_pred HHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 145 VRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
....++... .|.+. +..++..+....+.+++.+.|+++++. ...|+++.|++
T Consensus 200 ~~~~~~~~~--------~p~~~------~~~~~~~~~~~~~~~~~~~~i~~r~~~----------~~~dll~~ll~ 251 (435)
T 2wm5_A 200 WTNVILGFG--------DPDLA------TDFDEFMQVSADIGAYATALAEDRRVN----------HHDDLTSSLVE 251 (435)
T ss_dssp HHHHHHHTT--------CTTSC------CCHHHHHHHHHHHHHHHHHHHHHHHHS----------CCSSHHHHHHH
T ss_pred HHHHHhccC--------Ccchh------hhHHHHHHHHHHHHHHHHHHHHHHhcC----------CCCCHHHHHHh
Confidence 554443321 13221 112355667778888999999888752 24688888764
No 41
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin, oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A* 1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Probab=99.69 E-value=1e-15 Score=127.04 Aligned_cols=172 Identities=16% Similarity=0.224 Sum_probs=121.9
Q ss_pred CCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCC--c----h------h-hhh-hcCCCc
Q 048376 15 GSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHF--P----P------A-QII-SYNYRD 80 (221)
Q Consensus 15 ~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~--~----~------~-~~~-~~~~~~ 80 (221)
..+++..+.+| ++||||+++++|+.+++||++|++|+++|.++ .|++||.. + . . ... ...+.+
T Consensus 13 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (404)
T 1z8o_A 13 HVDWYRTYAEL-RETAPVTPVRFLGQDAWLVTGYDEAKAALSDL--RLSSDPKKKYPGVEVEFPAYLGFPEDVRNYFATN 89 (404)
T ss_dssp TSSHHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHHCT--TEECCTTCCCTTCCCCCGGGTTCCHHHHHHHSSS
T ss_pred ccCcHHHHHHH-HhcCCeeeecCCCceEEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccchhhhcccc
Confidence 45788999999 99999999999999999999999999999876 69988753 2 1 1 110 001345
Q ss_pred eeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH------------------HHH-HHHHHHHHHHHHhCCCCCChhH
Q 048376 81 IVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK------------------SKI-YSLMYGITSRAAFGNRSRDQEA 141 (221)
Q Consensus 81 ~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~------------------~~~-~~~~~~vi~~~~fG~~~~~~~~ 141 (221)
+++. +|+.|+++||++ .+.|+++.++.+.+.+++ ..+ ..++.++|+.+ ||...+..+.
T Consensus 90 l~~~-~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~d~~~~~~~~~~~~vi~~~-~G~~~~~~~~ 166 (404)
T 1z8o_A 90 MGTS-DPPTHTRLRKLV-SQEFTVRRVEAMRPRVEQITAELLDEVGDSGVVDIVDRFAHPLPIKVICEL-LGVDEKYRGE 166 (404)
T ss_dssp GGGC-CTTHHHHHHHHH-HTTSCHHHHHHTHHHHHHHHHHHHHTSCSSSEEEHHHHTTTHHHHHHHHHH-TTCCGGGTTT
T ss_pred cccC-CCcHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHhhhhcCCcchHHHHhHHHHHHHHHHH-hCCCHHHHHH
Confidence 5544 799999999996 578998888877665553 233 47889999985 9987765445
Q ss_pred HHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 142 FASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
+......+.. . ..| . .++..+....+.+++.+.|++++++ ...|+++.|+.
T Consensus 167 ~~~~~~~~~~----~----~~p---------~-~~~~~~~~~~~~~~~~~~i~~r~~~----------~~~dll~~ll~ 217 (404)
T 1z8o_A 167 FGRWSSEILV----M----DPE---------R-AEQRGQAAREVVNFILDLVERRRTE----------PGDDLLSALIR 217 (404)
T ss_dssp HHHHHHHHHC----C----CGG---------G-HHHHHHHHHHHHHHHHHHHHHHHHS----------CCSSHHHHHHH
T ss_pred HHHHHHHHhc----c----CCh---------h-HHHHHHHHHHHHHHHHHHHHHHHhC----------CCCCHHHHHHh
Confidence 5444443322 0 001 1 2445567778888899999888752 24688888874
No 42
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding, oxidoreductase-antibiotic complex; HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB: 3e5j_A* 3e5k_A* 3e5l_A*
Probab=99.68 E-value=1.3e-15 Score=126.29 Aligned_cols=171 Identities=12% Similarity=0.234 Sum_probs=116.2
Q ss_pred CCCccHHHHHHHhhcCCceEEEc-CCcCEEEeccHHHHHHHHHhCCCccCCCCC--C-chhhhhhc--CCCceeeCCCCh
Q 048376 15 GSLPHHRLRDLTNKYGPLMLLQL-GQVPAIIVSSPQVAKEVMKTHDVVFASRPH--F-PPAQIISY--NYRDIVFSPYGD 88 (221)
Q Consensus 15 ~~~~~~~~~~~~~~YG~i~~l~~-g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~--~-~~~~~~~~--~~~~~~~~~~g~ 88 (221)
..+++..+.+| ++||||+++++ |++++|+|+|+++|+++|.++ .|++|+. . +....+.. .+.++++ .+|+
T Consensus 18 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~ 93 (403)
T 3aba_A 18 PFLPPDGIADI-RAAAPVTRATFTSGHEAWLVTGYEEVRALLRDS--SFSVQVPHALHTQDGVVTQKPGRGSLLW-QDEP 93 (403)
T ss_dssp TTSCCTTHHHH-HHHCSEEEEECTTSCEEEEECCHHHHHHHHHCT--TEESCCSCCTTSSSCCCCCCCCTTCCTT-CCTT
T ss_pred ccChhHHHHHH-HhcCCeeeeccCCCceEEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccccc-CCch
Confidence 45788899999 99999999997 999999999999999999875 5888863 1 11111111 2345544 4799
Q ss_pred HHHHHHHHHHHhhcCHHHHHHhHHHHHH-------------------HHH-HHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 048376 89 SWKQLRKICVSELLSAKRVQSFQSIREK-------------------SKI-YSLMYGITSRAAFGNRSRDQEAFASVRGE 148 (221)
Q Consensus 89 ~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~-------------------~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~~ 148 (221)
.|+++||++. +.|+++.++.+.+.+++ ..+ ..++.+||+. +||.+.+..+.+......
T Consensus 94 ~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~~~~~~~~~~~ 171 (403)
T 3aba_A 94 EHTSDRKLLA-KEFTVRRMQALRPNIQRIVDEHLDAIEARGGPVDLVKTFANAVPSMVISD-LFGVPVERRAEFQDIAEA 171 (403)
T ss_dssp HHHHHHHHHH-HHSCHHHHHTTHHHHHHHHHHHHHHHHHHCSCEEHHHHTTTHHHHHHHHH-HHTCCGGGHHHHHHHHHH
T ss_pred hHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHH
Confidence 9999999974 67888777766554432 233 3578899997 699887544444333322
Q ss_pred HHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 149 ITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 149 ~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
+. .. . .| + ++..+..+.+.+++.+.|++++++ ...|+++.|++
T Consensus 172 ~~---~~---~--~~--------p---~~~~~~~~~~~~~~~~~i~~r~~~----------~~~dll~~ll~ 214 (403)
T 3aba_A 172 MM---RV---D--QD--------A---AATEAAGMRLGGLLYQLVQERRAN----------PGDDLISALIT 214 (403)
T ss_dssp HS---BS---S--SC--------H---HHHHHHHHHHHHHHHHHHHHHHHS----------CCSSHHHHHHT
T ss_pred HH---hc---c--Cc--------H---HHHHHHHHHHHHHHHHHHHHHHhC----------CCCCHHHHHHh
Confidence 11 10 0 01 1 345566777888899999888753 13688888774
No 43
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox oxidoreductase; HET: HEM; 1.75A {Pseudonocardia autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Probab=99.67 E-value=8.5e-16 Score=127.83 Aligned_cols=170 Identities=12% Similarity=0.205 Sum_probs=118.2
Q ss_pred CCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchh---h-hhhc-CCCceeeCCCChH
Q 048376 15 GSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPA---Q-IISY-NYRDIVFSPYGDS 89 (221)
Q Consensus 15 ~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~---~-~~~~-~~~~~~~~~~g~~ 89 (221)
..+++..+.+| ++||||+++++|+.+++||+|+++|+++|.++. |++||..... . .+.. .+.++++ .+|+.
T Consensus 19 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~~ 94 (411)
T 3a4g_A 19 WQNPHPAYAAL-RAEDPVRKLALPDGPVWLLTRYADVREAFVDPR--LSKDWRHTLPEDQRADMPATPTPMMIL-MDPPD 94 (411)
T ss_dssp TTCCHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHTCTT--EESCGGGGSCGGGCTTCCSCSSCCGGG-CCTTH
T ss_pred hcCchHHHHHH-HhcCCeeeccCCCCCEEEEecHHHHHHHHhCCC--cccccccccccccccccCccccccccc-CCchH
Confidence 45788999999 999999999999999999999999999998763 9998753211 0 1111 2345544 47999
Q ss_pred HHHHHHHHHHhhcCHHHHHHhHHHHHH------------------HHH-HHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 048376 90 WKQLRKICVSELLSAKRVQSFQSIREK------------------SKI-YSLMYGITSRAAFGNRSRDQEAFASVRGEIT 150 (221)
Q Consensus 90 Wk~~Rr~~~~~~~~~~~~~~~~~i~~~------------------~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~ 150 (221)
|+++||++ .+.|++..++.+.+.+++ ..+ ..++.++|+.+ ||.+.+..+.+......+.
T Consensus 95 h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~vd~~~~~~~~~~~~vi~~~-~G~~~~~~~~~~~~~~~~~ 172 (411)
T 3a4g_A 95 HTRLRKLV-GRSFTVRRMNELEPRITEIADGLLAGLPTDGPVDLMREYAFQIPVQVICEL-LGVPAEDRDDFSAWSSVLV 172 (411)
T ss_dssp HHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHHHHHSCSSSCEEHHHHTTTTHHHHHHHHH-HTCCGGGHHHHHHHHHHHT
T ss_pred HHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHhHHHHHHHH-hCCCHHHHHHHHHHHHHHh
Confidence 99999996 577998888877665543 233 46789999975 9988765444444333221
Q ss_pred HHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 151 KLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 151 ~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
. ..| + ++..+..+.+.+++.+.|+++++. ...|+++.|++
T Consensus 173 ~---------~~p--------~---~~~~~~~~~~~~~~~~~i~~r~~~----------~~~d~l~~ll~ 212 (411)
T 3a4g_A 173 D---------DSP--------A---DDKNAAMGKLHGYLSDLLERKRTE----------PDDALLSSLLA 212 (411)
T ss_dssp T---------SSC--------T---TTHHHHHHHHHHHHHHHHHHHHHS----------CCSSHHHHHHH
T ss_pred c---------cCC--------H---HHHHHHHHHHHHHHHHHHHHHHhC----------CCCCHHHHHHH
Confidence 1 012 0 123456667888888888888752 13678887764
No 44
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2, anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A {Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A* 2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Probab=99.66 E-value=4.8e-16 Score=129.07 Aligned_cols=179 Identities=15% Similarity=0.157 Sum_probs=116.9
Q ss_pred CCcccccccccCCCCccHHHHHHHhhcCCceEEEc-CCcC-EEEeccHHHHHHHHHhCCCccCCCCCCchhh----h-hh
Q 048376 3 KLPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQL-GQVP-AIIVSSPQVAKEVMKTHDVVFASRPHFPPAQ----I-IS 75 (221)
Q Consensus 3 ~~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~-g~~~-~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~----~-~~ 75 (221)
++|+.++ . ..+|+..+.+| ++||||+++++ |+.+ ++||+||++++++|.+ ..|++|+...... . ..
T Consensus 15 ~~p~~~~---~-~~~p~~~~~~l-~~~Gpv~~~~~~~g~~p~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~ 87 (406)
T 1s1f_A 15 DWPAVDL---P-GSDFDPVLTEL-MREGPVTRISLPNGEGWAWLVTRHDDVRLVTND--PRFGREAVMDRQVTRLAPHFI 87 (406)
T ss_dssp ECCCCCC---C-TTCCCHHHHHH-HHHCSEEEEECSBSBSCEEEECSHHHHHHHHTC--TTEESTTTTTTTBCBSSSSCS
T ss_pred CCCCCcc---c-ccCchHHHHHH-HhcCCeeeeccCCCcccEEEEcCHHHHHHHHcC--CCccCCcCCCCCccccccccc
Confidence 4667665 3 45788888888 47999999996 5555 9999999999999986 4798887532111 1 11
Q ss_pred cCCCceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH-------------------HHH-HHHHHHHHHHHHhCCC
Q 048376 76 YNYRDIVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK-------------------SKI-YSLMYGITSRAAFGNR 135 (221)
Q Consensus 76 ~~~~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~-------------------~~~-~~~~~~vi~~~~fG~~ 135 (221)
..+.++++. +|+.|+++||++. +.|++..++.+.+.+++ ..+ ..++.+||+. +||.+
T Consensus 88 ~~~~~l~~~-dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~d~~~~~~~~~~~~vi~~-~~G~~ 164 (406)
T 1s1f_A 88 PARGAVGFL-DPPDHTRLRRSVA-AAFTARGVERVRERSRGMLDELVDAMLRAGPPADLTEAVLSPFPIAVICE-LMGVP 164 (406)
T ss_dssp SCTTSGGGC-CTTHHHHHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHHHHHHHCSSEEHHHHTTTHHHHHHHHH-HHTCC
T ss_pred ccccccccC-CchHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHhhHhHHHHHHH-HhCCC
Confidence 113455554 6999999999975 66888777776554433 233 3578999998 59998
Q ss_pred CCChhHHHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHH
Q 048376 136 SRDQEAFASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLV 215 (221)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~l 215 (221)
++..+.+......+..... | . ++..+....+.+++.+.|+++++. ...|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~--------~-~----------~~~~~~~~~~~~~~~~~i~~r~~~----------~~~d~l 215 (406)
T 1s1f_A 165 ATDRHSMHTWTQLILSSSH--------G-A----------EVSERAKNEMNAYFSDLIGLRSDS----------AGEDVT 215 (406)
T ss_dssp GGGHHHHHHHHHHHHHHHT--------T-C----------CCCHHHHTHHHHHHHHHHHTSCCS----------CCCSHH
T ss_pred HHHHHHHHHHHHHHHhccC--------C-H----------HHHHHHHHHHHHHHHHHHHHHHhC----------CCCCHH
Confidence 7655555554444333211 1 0 112234555667777777665431 236888
Q ss_pred HHhhc
Q 048376 216 DVLLK 220 (221)
Q Consensus 216 d~ll~ 220 (221)
+.|+.
T Consensus 216 ~~ll~ 220 (406)
T 1s1f_A 216 SLLGA 220 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88763
No 45
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron, metal-binding, oxidoreductase; HET: HEM; 1.35A {Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A* 3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Probab=99.66 E-value=4.5e-16 Score=130.29 Aligned_cols=174 Identities=16% Similarity=0.161 Sum_probs=111.9
Q ss_pred CCccHHHHHHHhhcCCceEEE--------cCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhh--------hhhcCCC
Q 048376 16 SLPHHRLRDLTNKYGPLMLLQ--------LGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQ--------IISYNYR 79 (221)
Q Consensus 16 ~~~~~~~~~~~~~YG~i~~l~--------~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~--------~~~~~~~ 79 (221)
.+|+..+.++ ++||||+++. +|+.+++||+++++|+++|. +.+.|++||...... .....+.
T Consensus 37 ~~p~~~~~~l-r~~gPv~~~~~~~g~~~~lG~~~~~vv~~~~~v~~vl~-~~~~fs~~~~~~~~~~~~~~~~~~~~~~~~ 114 (433)
T 3ivy_A 37 RLPVAEFAEL-RSAAPIWWNGQDPGKGGGFHDGGFWAITKLNDVKEISR-HSDVFSSYENGVIPRFKNDIAREDIEVQRF 114 (433)
T ss_dssp CCCHHHHHHH-HHHCSEEEEECCTTCSTTCCSSEEEEECSHHHHHHHHH-CTTTEESTTTCSCCCCCTTCCHHHHHGGGG
T ss_pred CCccHHHHHH-HhcCCEEecccccccccccCCCCEEEEecHHHHHHHHc-ChhhccCCcccccccccccccccccccccC
Confidence 3588899999 8899999999 77789999999999999995 457899998643321 1211234
Q ss_pred ceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH------------------HHH-HHHHHHHHHHHHhCCCCCChh
Q 048376 80 DIVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK------------------SKI-YSLMYGITSRAAFGNRSRDQE 140 (221)
Q Consensus 80 ~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~------------------~~~-~~~~~~vi~~~~fG~~~~~~~ 140 (221)
+++ ..+|+.|+++||++ .+.|++..++.+.+.+++ ..+ ..++++||+++ ||...+..+
T Consensus 115 ~l~-~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~d~~~~~~~~~~~~vi~~l-~G~~~~~~~ 191 (433)
T 3ivy_A 115 VML-NMDAPHHTRLRKII-SRGFTPRAVGRLHDELQERAQKIAAEAAAAGSGDFVEQVSCELPLQAIAGL-LGVPQEDRG 191 (433)
T ss_dssp SGG-GCCTTHHHHHHHHH-GGGSCHHHHHTTHHHHHHHHHHHHHHHHHHCEEEHHHHTTSHHHHHHHHHH-HTCCHHHHH
T ss_pred Ccc-ccChHHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeeHHHHHHHHHHHHHHHHH-cCCCHHHHH
Confidence 544 45799999999997 678998888777655443 344 78899999996 996532222
Q ss_pred HHHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 141 AFASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
.+.... .... ....|.... .+..+....+.+++.+.|++++++ ...|+++.|++
T Consensus 192 ~~~~~~-------~~~~-~~~~p~~~~--------~~~~~~~~~~~~~~~~~i~~r~~~----------~~~dll~~ll~ 245 (433)
T 3ivy_A 192 KLFHWS-------NEMT-GNEDPEYAH--------IDPKASSAELIGYAMKMAEEKAKN----------PADDIVTQLIQ 245 (433)
T ss_dssp HHHHHH-------TTCS-CCCCGGGTT--------CCHHHHHHHHHHHHHHHHHHC-----------------CHHHHHS
T ss_pred HHHHHH-------HHHh-ccCCchhhh--------HHHHHHHHHHHHHHHHHHHHHhcC----------CCCcHHHHHHh
Confidence 222111 1110 112232211 133456667788888888877642 23577777764
No 46
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis; HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB: 2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Probab=99.66 E-value=1.6e-15 Score=126.43 Aligned_cols=172 Identities=17% Similarity=0.244 Sum_probs=116.0
Q ss_pred CCCccHHHHHHHhhcCCceEEEc-CCcCEEEeccHHHHHHHHHhCCCccCCCCCC-chhhhhhc--CCCceeeCCCChHH
Q 048376 15 GSLPHHRLRDLTNKYGPLMLLQL-GQVPAIIVSSPQVAKEVMKTHDVVFASRPHF-PPAQIISY--NYRDIVFSPYGDSW 90 (221)
Q Consensus 15 ~~~~~~~~~~~~~~YG~i~~l~~-g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~-~~~~~~~~--~~~~~~~~~~g~~W 90 (221)
..+++..+.+| ++||||+++++ |++++|+|+||++|+++|.++ .|++||.. .....+.. .+.++++ .+|+.|
T Consensus 36 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~i~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~l~~-~dg~~h 111 (417)
T 2y5n_A 36 GLTLAGRYGEL-QETEPVSRVRPPYGEEAWLVTRYEDVRAVLGDG--RFVRGPSMTRDEPRTRPEMVKGGLLS-MDPPEH 111 (417)
T ss_dssp SCCCCHHHHHH-HHHCSEEEEECSBSCCEEEECSHHHHHHHHTCT--TEESGGGGTSCCCBSSSSCCCCSGGG-CCTTHH
T ss_pred ccCchHHHHHH-HhcCCeEeeccCCCceEEEECCHHHHHHHHcCC--CcccCccccccccccCcccccccCcc-CCchHH
Confidence 35788999999 89999999997 899999999999999999875 58887642 11111111 2345544 479999
Q ss_pred HHHHHHHHHhhcCHHHHHHhHHHHHH-------------------HHH-HHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 048376 91 KQLRKICVSELLSAKRVQSFQSIREK-------------------SKI-YSLMYGITSRAAFGNRSRDQEAFASVRGEIT 150 (221)
Q Consensus 91 k~~Rr~~~~~~~~~~~~~~~~~i~~~-------------------~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~ 150 (221)
+++||++. +.|+++.++.+.+.+++ ..+ ..++.+||+. +||.+++..+.+......+.
T Consensus 112 ~~~R~~l~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~vdl~~~~~~~~~~~vi~~-~~G~~~~~~~~~~~~~~~~~ 189 (417)
T 2y5n_A 112 SRLRRLVV-KAFTARRAESLRPRAREIAHELVDQMAATGQPADLVAMFARQLPVRVICE-LLGVPSADHDRFTRWSGAFL 189 (417)
T ss_dssp HHHHHHHH-HHSCHHHHHHTHHHHHHHHHHHHHHHHHHCSSEEHHHHTTTTHHHHHHHH-HHTCCGGGHHHHHHHHHTTS
T ss_pred HHHHHHHh-hhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeHHHHHHHHhHHHHHHH-HcCCCHHHHHHHHHHHHHHh
Confidence 99999974 67888877776654443 123 2477889987 69988754444433322110
Q ss_pred HHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 151 KLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 151 ~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
..+. .+ .++..+....+.+++.+.|+++++. ...|+++.|+.
T Consensus 190 ---------~~~~-------~~--~~~~~~~~~~l~~~~~~~i~~r~~~----------~~~dll~~ll~ 231 (417)
T 2y5n_A 190 ---------STAE-------VT--AEEMQEAAEQAYAYMGDLIDRRRKE----------PTDDLVSALVQ 231 (417)
T ss_dssp ---------TTCC-------CC--HHHHHHHHHHHHHHHHHHHHHHHHS----------CCSSHHHHHHH
T ss_pred ---------cccC-------CC--HHHHHHHHHHHHHHHHHHHHHHHhC----------CCCCHHHHHHh
Confidence 0000 01 1345567778888899988888753 13688888764
No 47
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron, metal-binding, oxidoreductase, substrate-soaking, cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB: 1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A* 2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A* 1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Probab=99.65 E-value=4e-15 Score=123.90 Aligned_cols=166 Identities=12% Similarity=0.092 Sum_probs=116.1
Q ss_pred CCccHHHHHHHhhcC--CceEEE-cCCcCEEEeccHHHHHHHHHhCCCccCCCC-CCchhhhhhcCCCc-eeeCCCChHH
Q 048376 16 SLPHHRLRDLTNKYG--PLMLLQ-LGQVPAIIVSSPQVAKEVMKTHDVVFASRP-HFPPAQIISYNYRD-IVFSPYGDSW 90 (221)
Q Consensus 16 ~~~~~~~~~~~~~YG--~i~~l~-~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp-~~~~~~~~~~~~~~-~~~~~~g~~W 90 (221)
.+++..+.+|. +|| ||++++ +| +++||+|+++++++|. +.+.|++|| ........ . +.+ +++. +|+.|
T Consensus 37 ~~p~~~~~~l~-~~G~~pv~~~~~~g--~~vvv~~~~~v~~vl~-~~~~f~~~~~~~~~~~~~-~-~~~~l~~~-~g~~~ 109 (415)
T 2zwu_A 37 AGVQEAWAVLQ-ESNVPDLVWTRCNG--GHWIATRGQLIREAYE-DYRHFSSECPFIPREAGE-A-YDFIPTSM-DPPEQ 109 (415)
T ss_dssp GCHHHHHHGGG-STTSCSEEEECGGG--CEEEECSHHHHHHHHH-CTTTEETTSCSSSHHHHH-H-CCCTTTTC-CTTTT
T ss_pred cChHHHHHHHH-hcCCCCeEEecCCC--CeEEEcCHHHHHHHHc-CccccCCCcccCCCCccc-c-ccccCccC-CCcHH
Confidence 35778889995 799 999999 77 7999999999999996 456899998 32222211 1 334 5544 69999
Q ss_pred HHHHHHHHHhhcCHHHHHHhHHHHHH------------------HHH-HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHH
Q 048376 91 KQLRKICVSELLSAKRVQSFQSIREK------------------SKI-YSLMYGITSRAAFGNRSRDQEAFASVRGEITK 151 (221)
Q Consensus 91 k~~Rr~~~~~~~~~~~~~~~~~i~~~------------------~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~ 151 (221)
+++||++. +.|+...++.+.+.+++ ..+ ..+++++|+.+ ||.+++..+.+......++.
T Consensus 110 ~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~d~~~~~~~~~~~~vi~~~-~G~~~~~~~~~~~~~~~~~~ 187 (415)
T 2zwu_A 110 RQFRALAN-QVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFMLL-AGLPEEDIPHLKYLTDQMTR 187 (415)
T ss_dssp HHHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHHHHGGGTEEEHHHHTTTHHHHHHHHHH-HTCCGGGHHHHHHHHHHHHS
T ss_pred HHHHHHHH-hhhCHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHh
Confidence 99999974 67888777777655443 233 57899999999 99988655555554433321
Q ss_pred HcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 152 LMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 152 ~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
. ..|. +..+..+.+.+++.+.|+++++. ...|+++.|+.
T Consensus 188 ---~-----~~P~------------~~~~~~~~~~~~~~~~i~~r~~~----------~~~dll~~ll~ 226 (415)
T 2zwu_A 188 ---P-----DGSM------------TFAEAKEALYDYLIPIIEQRRQK----------PGTDAISIVAN 226 (415)
T ss_dssp ---C-----CSSS------------CHHHHHHHHHHHHHHHHHHHHHS----------CCSSHHHHHHT
T ss_pred ---c-----cCHH------------HHHHHHHHHHHHHHHHHHHHHhC----------CCCCHHHHHHH
Confidence 1 1132 23456667788888888888752 24788888874
No 48
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A*
Probab=99.65 E-value=8.3e-17 Score=135.76 Aligned_cols=103 Identities=10% Similarity=0.090 Sum_probs=73.3
Q ss_pred CCC-CcccccccccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCc-hhhhhhcCC
Q 048376 1 PWK-LPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFP-PAQIISYNY 78 (221)
Q Consensus 1 P~~-~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~-~~~~~~~~~ 78 (221)
|++ +|+|||++++ ..+++..+.+|.++|||||++++|+.+++||+||+++++++.++.. |+.++... ...... +
T Consensus 23 p~~~~P~iG~~~~~-~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~-~~~~~~~~~~~~~~~--g 98 (475)
T 3b98_A 23 DKGMIPWLGHALEF-GKDAAKFLTRMKEKHGDIFTVRAAGLYITVLLDSNCYDAVLSDVAS-LDQTSYAQVLMKRIF--N 98 (475)
T ss_dssp ECCSSTTTBTHHHH-HHCHHHHHHHHHHHHCSEEEEEETTEEEEEECCTTTHHHHHTCTTT-EESHHHHHHHHHHTT--C
T ss_pred CCCCcchHHhHHHH-hhCHHHHHHHHHHHhCCeEEEEECCceEEEEeCHHHHHHHHcCccc-CCchHHHHHHHHHHh--C
Confidence 455 8999999998 5678899999999999999999999999999999999999986542 44433211 111221 2
Q ss_pred CceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHH
Q 048376 79 RDIVFSPYGDSWKQLRKICVSELLSAKRVQSFQS 112 (221)
Q Consensus 79 ~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~ 112 (221)
.+++. .+|+.| |+++ ...|+...++.+..
T Consensus 99 ~~~~~-~~~~~~---R~~~-~~~f~~~~l~~~~~ 127 (475)
T 3b98_A 99 MILPS-HNPESE---KKRA-EMHFQGASLTQLSN 127 (475)
T ss_dssp CCCTT-CCHHHH---HHHH-HHHTSHHHHHHHHH
T ss_pred CCCCC-CChHHH---HHHH-HHHcChhhHHHHHH
Confidence 34333 357766 4554 35677777766654
No 49
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105, oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea recticatena}
Probab=99.65 E-value=2.7e-15 Score=124.89 Aligned_cols=170 Identities=14% Similarity=0.153 Sum_probs=114.8
Q ss_pred CCCccHHHHHHHhhcCCceEEEc-CCcCEEEeccHHHHHHHHHhCCCccCCCCCCchh------hhhhc---CCCc-eee
Q 048376 15 GSLPHHRLRDLTNKYGPLMLLQL-GQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPA------QIISY---NYRD-IVF 83 (221)
Q Consensus 15 ~~~~~~~~~~~~~~YG~i~~l~~-g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~------~~~~~---~~~~-~~~ 83 (221)
..+|+..+.+|. +||||+++++ |++++|||+||++|+++|.++ .|++||..+.. ..+.. ++.+ +++
T Consensus 21 ~~~p~~~~~~l~-~~Gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 97 (413)
T 2z36_A 21 PFAPPAAYERLR-ERAPINKVRLTSGGQAWWVSGHEEARAVLADG--RFSSDKRKDGFPLFTLDAATLQQLRSQPPLMLG 97 (413)
T ss_dssp TTBCCHHHHHHH-HHCSEEEEEETTSCEEEEECSHHHHHHHHHCT--TEECCTTSTTCCCSSCCHHHHHHHTTSCCCGGG
T ss_pred ccCchHHHHHHH-HcCCeeEeecCCCceEEEEecHHHHHHHHcCC--CcccCccccCccccccccccccccccccccccc
Confidence 457889999997 7899999997 899999999999999999873 69988743211 12210 1345 554
Q ss_pred CCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH--------------------HHH-HHHHHHHHHHHHhCCCCCChhHH
Q 048376 84 SPYGDSWKQLRKICVSELLSAKRVQSFQSIREK--------------------SKI-YSLMYGITSRAAFGNRSRDQEAF 142 (221)
Q Consensus 84 ~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~--------------------~~~-~~~~~~vi~~~~fG~~~~~~~~~ 142 (221)
. +|+.|+++||++ .+.|++..++.+.+++++ ..+ ..++.+||+.+ ||.+++..+.+
T Consensus 98 ~-~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~~~d~~~~~~~~~~~~vi~~~-~G~~~~~~~~~ 174 (413)
T 2z36_A 98 M-DGAEHSAARRPV-IGEFTVKRLAALRPRIQDIVDHFIDDMLATDQRPVDLVQALSLPVPSLVICEL-LGVPYTDHDFF 174 (413)
T ss_dssp C-CHHHHHHHHHHH-HGGGSHHHHHHHHHHHHHHHHHHHHHHTTCSCSSEEHHHHTTTHHHHHHHHHH-HTCCGGGHHHH
T ss_pred c-CchHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHhhhhHHHHHHHH-hCCCHHHHHHH
Confidence 4 699999999996 577888877777655443 123 25778888884 89876544333
Q ss_pred HHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 143 ASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
......+ +.... + ++..+....+.+++.+.|+++++. ...|+++.|+.
T Consensus 175 ~~~~~~~------------~~~~~----~----~~~~~~~~~~~~~~~~~i~~r~~~----------~~~dll~~ll~ 222 (413)
T 2z36_A 175 QSRTTMM------------VSRTS----M----EDRRRAFAELRAYIDDLITRKESE----------PGDDLFSRQIA 222 (413)
T ss_dssp HHHHHHT------------TCSSC----H----HHHHHHHHHHHHHHHHHHHHHHSS----------CCSSHHHHHHH
T ss_pred HHHHHHH------------hcccC----c----HHHHHHHHHHHHHHHHHHHHHHhC----------CCCCHHHHHHH
Confidence 3322211 00000 0 344566677888888888887642 23688888763
No 50
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A {Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A* 1pkf_A*
Probab=99.65 E-value=1.2e-15 Score=127.10 Aligned_cols=178 Identities=11% Similarity=0.168 Sum_probs=123.1
Q ss_pred CCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCC-----Cc-h--hhhhhcC-CCceeeCC
Q 048376 15 GSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPH-----FP-P--AQIISYN-YRDIVFSP 85 (221)
Q Consensus 15 ~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~-----~~-~--~~~~~~~-~~~~~~~~ 85 (221)
..+++..+.+| ++||||++ + |+.++|||+|+++|+++|.++. |++||. .. . ...+... +.++++ .
T Consensus 25 ~~~p~~~~~~l-~~~Gpv~~-~-~~~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~ 98 (419)
T 1q5d_A 25 AEDPFPAIERL-REATPIFY-W-DEGRSWVLTRYHDVSAVFRDER--FAVSREEWESSAEYSSAIPELSDMKKYGLFG-L 98 (419)
T ss_dssp TTCCHHHHHHH-HHHCSEEE-E-TTTTEEEECSHHHHHHHHTCTT--EECCGGGSTTHHHHHHSSGGGHHHHHHSTTT-S
T ss_pred hhChHHHHHHH-HhhCCccc-c-CCCCEEEEecHHHHHHHHcCCC--ccccccccccccccccccchhhhhccccccc-C
Confidence 34688899999 78999999 6 7789999999999999998774 999972 11 0 1122100 234444 4
Q ss_pred CChHHHHHHHHHHHhhcCHHHHHHhHHHHHH------------------HHH-HHHHHHHHHHHHhCCCCCChhHHHHHH
Q 048376 86 YGDSWKQLRKICVSELLSAKRVQSFQSIREK------------------SKI-YSLMYGITSRAAFGNRSRDQEAFASVR 146 (221)
Q Consensus 86 ~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~------------------~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~ 146 (221)
+|+.|+++||++ .+.|+...++.+.+.+++ ..+ ..++.+||+.+ ||.+++..+.+....
T Consensus 99 ~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~d~~~~~~~~~~~~vi~~~-fG~~~~~~~~~~~~~ 176 (419)
T 1q5d_A 99 PPEDHARVRKLV-NPSFTSRAIDLLRAEIQRTVDQLLDARSGQEEFDVVRDYAEGIPMRAISAL-LKVPAECDEKFRRFG 176 (419)
T ss_dssp CHHHHHHHHHHH-GGGGSHHHHGGGHHHHHHHHHHHHHHHTTSSCEETTTTTGGGSHHHHHHHH-TTCCGGGHHHHHHHH
T ss_pred CchHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHH
Confidence 699999999996 578898888877665543 223 67899999998 999876555565555
Q ss_pred HHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCC-cHHHHhhc
Q 048376 147 GEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDE-DLVDVLLK 220 (221)
Q Consensus 147 ~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-d~ld~ll~ 220 (221)
..+...... ..+|+.. ...++..+....+.+++.+.|++++++ ... |+++.|++
T Consensus 177 ~~~~~~~~~----~~~P~~~------~~~~~~~~~~~~~~~~~~~~i~~r~~~----------~~~~dll~~ll~ 231 (419)
T 1q5d_A 177 SATARALGV----GLVPRVD------EETKTLVASVTEGLALLHGVLDERRRN----------PLENDVLTMLLQ 231 (419)
T ss_dssp HHHHHHTTT----TTSSCCC------SCHHHHHHHHHHHHHHHHHHHHHHHHS----------CCSSCHHHHHHH
T ss_pred HHHHHhccc----ccccCCh------HHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCCCCHHHHHHh
Confidence 554443221 1244321 122456677788889999999888752 134 89988874
No 51
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB: 2z3u_A* 3a1l_A*
Probab=99.65 E-value=3.4e-15 Score=124.72 Aligned_cols=177 Identities=15% Similarity=0.145 Sum_probs=115.4
Q ss_pred CCccHHHHHHHhhcCCceEEEcC--CcCEEEeccHHHHHHHHHhCCCccCCCCCC--------c-hhh----hh-hcCCC
Q 048376 16 SLPHHRLRDLTNKYGPLMLLQLG--QVPAIIVSSPQVAKEVMKTHDVVFASRPHF--------P-PAQ----II-SYNYR 79 (221)
Q Consensus 16 ~~~~~~~~~~~~~YG~i~~l~~g--~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~--------~-~~~----~~-~~~~~ 79 (221)
.+++..+.+|.+ ||||+++++| +.+++||+||++|+++|.++ .|++||.. + ... .+ ..++.
T Consensus 20 ~~p~~~~~~l~~-~Gpv~~~~~g~~~~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (425)
T 2z3t_A 20 ADPYPVYRRYRE-AAPVHRTASGPGKPDTYYVFTYDDVVRVLSNR--RLGRNARVASGDTDTAPVPIPTEHRALRTVVEN 96 (425)
T ss_dssp HCCHHHHHHHHH-HCSEEEECCCSSCCCEEEECSHHHHHHHHHCT--TEESSCCCC---------------CHHHHHHTT
T ss_pred cChHHHHHHHHh-cCCeEeccccCCCCCeEEEcCHHHHHHHHcCC--Ccccccccccccccccccccccccccccccccc
Confidence 367888889864 9999999998 88999999999999999875 79999752 1 110 01 11124
Q ss_pred ceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH------------------H-HHHHHHHHHHHHHHhCCCCCChh
Q 048376 80 DIVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK------------------S-KIYSLMYGITSRAAFGNRSRDQE 140 (221)
Q Consensus 80 ~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~------------------~-~~~~~~~~vi~~~~fG~~~~~~~ 140 (221)
++++. +|+.|+++||++ .+.|+...++.+.+.+++ . ....++.++|+.+ ||.+++..+
T Consensus 97 ~l~~~-dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~g~~dl~~~~~~~~~~~vi~~~-~G~~~~~~~ 173 (425)
T 2z3t_A 97 WLVFL-DPPHHTELRSLL-TTEFSPSIVTGLRPRIAELASALLDRLRAQRRPDLVEGFAAPLPILVISAL-LGIPEEDHT 173 (425)
T ss_dssp CGGGC-CHHHHHHHHHHH-HGGGSHHHHHHHHHHHHHHHHHHHHHHTTSSSCBHHHHTTTHHHHHHHHHH-HTCCGGGHH
T ss_pred ccccC-CchHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH-hCCCHHHHH
Confidence 55555 699999999996 578998888777655543 2 2357899999998 999876544
Q ss_pred HHHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 141 AFASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
.+......+... .+.+| +. ....++..+..+.+.+++.+.|++++++ ...|+++.|++
T Consensus 174 ~~~~~~~~~~~~------~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~i~~r~~~----------~~~dll~~ll~ 231 (425)
T 2z3t_A 174 WLRANAVALQEA------STTRA-RD-----GRGYARAEAASQEFTRYFRREVDRRGGD----------DRDDLLTLLVR 231 (425)
T ss_dssp HHHHHHHHHHTT------CTTCC-C--------HHHHHHHHHHHHHHHHHHHHCC-----------------CHHHHHHH
T ss_pred HHHHHHHHHHhh------ccccC-CC-----HHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCCCHHHHHHH
Confidence 554444333221 12223 11 1122455667777888888888777642 13678877763
No 52
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM; 1.60A {Mycobacterium tuberculosis}
Probab=99.64 E-value=9.8e-15 Score=120.80 Aligned_cols=171 Identities=13% Similarity=0.131 Sum_probs=119.5
Q ss_pred CCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCCCceeeCCCChHHHHHHH
Q 048376 16 SLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNYRDIVFSPYGDSWKQLRK 95 (221)
Q Consensus 16 ~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr 95 (221)
.+++..+.+|.+ ||||++ ++. +++||+||++|+++|.++ +.|++||... ...+ .+.++++. +|+.|+++||
T Consensus 18 ~~p~~~~~~l~~-~Gpv~~--~~~-~~vvv~~~~~v~~vl~~~-~~f~~~~~~~-~~~~--~~~~l~~~-~g~~h~~~R~ 88 (398)
T 2xkr_A 18 REARAAYRWMRA-NQPVFR--DRN-GLAAASTYQAVIDAERQP-ELFSNAGGIR-PDQP--ALPMMIDM-DDPAHLLRRK 88 (398)
T ss_dssp TTHHHHHHHHHH-HCSEEE--CTT-CCEEECSHHHHHHHHTCT-TTEESTTCSS-TTSC--CCSSGGGC-CTTHHHHHHH
T ss_pred cChhHHHHHHHh-cCCeee--cCC-CeEEEecHHHHHHHHhCc-ccccCccccC-Cccc--cccccccc-CchHHHHHHH
Confidence 467888999987 999985 444 899999999999999765 4799998542 2222 23455544 6999999999
Q ss_pred HHHHhhcCHHHHHHhHHHHHH------------------HHH-HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHcCCC
Q 048376 96 ICVSELLSAKRVQSFQSIREK------------------SKI-YSLMYGITSRAAFGNRSRDQEAFASVRGEITKLMSGF 156 (221)
Q Consensus 96 ~~~~~~~~~~~~~~~~~i~~~------------------~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~ 156 (221)
++ .+.|++..++.+.+.+++ ..+ ..++++||+.+ ||.+.+..+.+......+.....
T Consensus 89 ~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~d~~~~~~~~~~~~vi~~~-fG~~~~~~~~~~~~~~~~~~~~~-- 164 (398)
T 2xkr_A 89 LV-NAGFTRKRVKDKEASIAALCDTLIDAVCERGECDFVRDLAAPLPMAVIGDM-LGVRPEQRDMFLRWSDDLVTFLS-- 164 (398)
T ss_dssp HH-GGGSCHHHHHTTHHHHHHHHHHHHHTTTTTSEEEHHHHTTTHHHHHHHHHH-HTCCGGGHHHHHHHHHHHHHHHT--
T ss_pred Hh-hhhhCHHHHHHHHHHHHHHHHHHHHhhhhcCCccHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHhccC--
Confidence 97 578998888777665543 133 47899999999 99987655555555544443211
Q ss_pred ccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 157 NIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 157 ~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
|.+ + +...++..+....+.+++.+.|+++++. ...|+++.|++
T Consensus 165 ------~~~--~---p~~~~~~~~~~~~~~~~~~~~i~~r~~~----------~~~dll~~ll~ 207 (398)
T 2xkr_A 165 ------SHV--S---QEDFQITMDAFAAYNDFTRATIAARRAD----------PTDDLVSVLVS 207 (398)
T ss_dssp ------SCC--C---HHHHHHHHHHHHHHHHHHHHHHHHHHHS----------CCSSHHHHHHH
T ss_pred ------ccc--c---hhhHHHHHHHHHHHHHHHHHHHHHHHhC----------CCCCHHHHHHH
Confidence 211 1 1123455667778888999999888752 24788888764
No 53
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase; HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.64 E-value=1.5e-15 Score=126.18 Aligned_cols=173 Identities=17% Similarity=0.347 Sum_probs=114.8
Q ss_pred ccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCC--Cchhhhhhc--------CCCce
Q 048376 12 QLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPH--FPPAQIISY--------NYRDI 81 (221)
Q Consensus 12 ~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~--~~~~~~~~~--------~~~~~ 81 (221)
.+ ..+++..+.+| ++||||+++++|+.++|||+||++++++|.++. |+.+|. ......+.. .+.++
T Consensus 12 ~~-~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 87 (408)
T 1odo_A 12 PT-GADHHTEHRTL-REGGPATWVDVLGVQAWSVSDPVLLKQLLTSSD--VSKDARAHWPAFGEVVGTWPLALWVAVENM 87 (408)
T ss_dssp TT-CTTHHHHHHHH-HTTCSEEEEEETTEEEEEECCHHHHHHHTTCTT--EESCHHHHCTTHHHHTTTCTTTHHHHCCSG
T ss_pred cc-cCChHHHHHHH-HHhCCeEEeccCCCCEEEECCHHHHHHHHcCCC--cccccccccccccccccccccccccccccc
Confidence 44 56788999999 999999999999999999999999999998653 555542 111001100 12344
Q ss_pred eeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH---------------------HHHH-HHHHHHHHHHHhCCCCCCh
Q 048376 82 VFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK---------------------SKIY-SLMYGITSRAAFGNRSRDQ 139 (221)
Q Consensus 82 ~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~---------------------~~~~-~~~~~vi~~~~fG~~~~~~ 139 (221)
+ ..+|+.|+++||++ .+.|+...++.+.+++++ ..+. .++.+||+. +||.+.+..
T Consensus 88 ~-~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~~ 164 (408)
T 1odo_A 88 F-TAYGPNHRKLRRLV-APAFSARRVDAMRPAVEAMVTGLVDRLAELPAGEPVDLRQELAYPLPIAVIGH-LMGVPQDRR 164 (408)
T ss_dssp G-GCCHHHHHHHHHTT-GGGGSHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCEEHHHHTTTHHHHHHHHH-HHTCCHHHH
T ss_pred c-ccCChHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhhHHHHHHH-HhCCCHHHH
Confidence 4 45799999999996 578888877776554443 2333 478899996 799876433
Q ss_pred hHHHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhh
Q 048376 140 EAFASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLL 219 (221)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll 219 (221)
+.+......++. . . . . .++..+....+.+++.++|+++++. ...|+++.|+
T Consensus 165 ~~~~~~~~~~~~---~--------~---~---~--~~~~~~~~~~~~~~~~~~i~~r~~~----------~~~d~l~~ll 215 (408)
T 1odo_A 165 DGFRALVDGVFD---T--------T---L---D--QAEAQANTARLYEVLDQLIAAKRAT----------PGDDMTSLLI 215 (408)
T ss_dssp HHHHHHHHHHHC---T--------T---C---C--HHHHHHHHHHHHHHHHHHHHHHHHS----------CCSSHHHHHH
T ss_pred HHHHHHHHHHhc---c--------c---C---C--HHHHHHHHHHHHHHHHHHHHHHhhC----------CCCCHHHHHH
Confidence 344433333211 0 0 0 0 1344566777888888888887652 1368888876
Q ss_pred c
Q 048376 220 K 220 (221)
Q Consensus 220 ~ 220 (221)
+
T Consensus 216 ~ 216 (408)
T 1odo_A 216 A 216 (408)
T ss_dssp H
T ss_pred H
Confidence 3
No 54
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase, metal-binding, oxidoreductase, hypothetical protein; HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB: 2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Probab=99.63 E-value=5.7e-15 Score=122.94 Aligned_cols=181 Identities=14% Similarity=0.154 Sum_probs=120.7
Q ss_pred ccccccccC----CCCccHHHHHHHhhcCCce-----EEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCc-hhh--h
Q 048376 6 LIGNLHQLA----GSLPHHRLRDLTNKYGPLM-----LLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFP-PAQ--I 73 (221)
Q Consensus 6 iiGnl~~l~----~~~~~~~~~~~~~~YG~i~-----~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~-~~~--~ 73 (221)
..|+-+++. ..+|+..+.+|. +||||+ ++++ .+++||+||++|+++|.++ +.|++||... ... .
T Consensus 11 ~~~~~~~~~~~~~~~~p~~~~~~l~-~~Gpv~~~~~~~~~~--~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~ 86 (414)
T 2uuq_A 11 VMSHEFQLATAETWPNPWPMYRALR-DHDPVHHVVPPQRPE--YDYYVLSRHADVWSAARDH-QTFSSAQGLTVNYGELE 86 (414)
T ss_dssp --CCSCCCCCTTTTTCCHHHHHHHH-HHCSEEEECCTTCGG--GCEEEECSHHHHHHHHHCT-TTEESTTCSSSCTTHHH
T ss_pred hhcCccCcCChhhccCchHHHHHHH-hcCCEEcccccccCC--CCEEEEcCHHHHHHHHcCc-hhccCCCCcccccCccc
Confidence 345655552 236788888884 799999 8877 7899999999999999976 6799998642 122 2
Q ss_pred h-h-cCCCceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH------------------HH-HHHHHHHHHHHHHh
Q 048376 74 I-S-YNYRDIVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK------------------SK-IYSLMYGITSRAAF 132 (221)
Q Consensus 74 ~-~-~~~~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~------------------~~-~~~~~~~vi~~~~f 132 (221)
+ . ..+.++++. +|+.|+++||++ .+.|++..++.+.+.+++ .. +..++.+||+. +|
T Consensus 87 ~~~~~~~~~l~~~-~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~vdl~~~~~~~~~~~vi~~-~~ 163 (414)
T 2uuq_A 87 MIGLHDTPPMVMQ-DPPVHTEFRKLV-SRGFTPRQVETVEPTVRKFVVERLEKLRANGGGDIVTELFKPLPSMVVAH-YL 163 (414)
T ss_dssp HHTCSSSCCGGGC-CTTHHHHHHHHH-HTTSSHHHHHHHHHHHHHHHHHHHHHHHHTTEEEHHHHTTTHHHHHHHHH-HT
T ss_pred ccccccccccccC-CchhHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHhHHHHHHH-Hh
Confidence 2 2 224566555 699999999997 578998888777655543 12 35789999999 69
Q ss_pred CCCCCChhHHHHHHHHHHHHcCCCcccccc-ccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCC
Q 048376 133 GNRSRDQEAFASVRGEITKLMSGFNIADMF-PSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDD 211 (221)
Q Consensus 133 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 211 (221)
|.+++..+.+....+.+... .++ |.. .+..+....+.+++.+.|++++++ ..
T Consensus 164 G~~~~~~~~~~~~~~~~~~~-------~~~~p~~----------~~~~~~~~~~~~~~~~~i~~r~~~----------~~ 216 (414)
T 2uuq_A 164 GVPEEDWTQFDGWTQAIVAA-------NAVDGAT----------TGALDAVGSMMAYFTGLIERRRTE----------PA 216 (414)
T ss_dssp TCCGGGHHHHHHHHHHHHHH-------HHC---------------CCHHHHHHHHHHHHHHHHHHTTS----------CC
T ss_pred CCCHHHHHHHHHHHHHHHhh-------cccCCch----------hHHHHHHHHHHHHHHHHHHHHHhC----------CC
Confidence 99887544555444433331 112 211 122345566778888888877642 24
Q ss_pred CcHHHHhhc
Q 048376 212 EDLVDVLLK 220 (221)
Q Consensus 212 ~d~ld~ll~ 220 (221)
.|+++.|++
T Consensus 217 ~dll~~ll~ 225 (414)
T 2uuq_A 217 DDAISHLVA 225 (414)
T ss_dssp SSHHHHHHH
T ss_pred CCHHHHHHh
Confidence 688888764
No 55
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12; 1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Probab=99.63 E-value=7.3e-15 Score=122.26 Aligned_cols=180 Identities=16% Similarity=0.186 Sum_probs=121.6
Q ss_pred CCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhh--------cCCCceeeCCC
Q 048376 15 GSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIIS--------YNYRDIVFSPY 86 (221)
Q Consensus 15 ~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~--------~~~~~~~~~~~ 86 (221)
..+|+..+.+| ++||||+++++| +++|++|++|+++|.+ .+.+++||......... ..+.++++. +
T Consensus 28 ~~~p~~~~~~l-r~~gpv~~~~~g---~~vv~~~~~v~~vl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-d 101 (418)
T 3r9b_A 28 RADPYPIYDRI-RRGGPLALPEAN---LAVFSSFSDCDDVLRH-PSSCSDRTKSTIFQRQLAAETQPRPQGPASFLFL-D 101 (418)
T ss_dssp TTCCHHHHHHH-HHHCCEEEGGGT---EEEECSHHHHHHHHHC-TTEECCGGGCHHHHHHHC---------CCCGGGC-C
T ss_pred ccCchHHHHHH-HhcCCEEECCCC---eEEEecHHHHHHHHcC-cccccCcccccccccccccccccccccccchhhc-C
Confidence 45788889888 688999999887 9999999999999965 45668887543322221 113354444 6
Q ss_pred ChHHHHHHHHHHHhhcCHHHHHHhHHHHHH------------------HHHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 048376 87 GDSWKQLRKICVSELLSAKRVQSFQSIREK------------------SKIYSLMYGITSRAAFGNRSRDQEAFASVRGE 148 (221)
Q Consensus 87 g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~------------------~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~ 148 (221)
|+.|+++||++ .+.|+++.++.+.+.+++ +....++.++|+. +||.+.+..+.+......
T Consensus 102 g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~l~~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~~~~~~~~~~~ 179 (418)
T 3r9b_A 102 PPDHTRLRGLV-SKAFAPRVIKRLEPEITALVDQLLDAVDGPEFNLIDNLAYPLPVAVICR-LLGVPIEDEPKFSRASAL 179 (418)
T ss_dssp TTHHHHHHHHH-HGGGSHHHHGGGHHHHHHHHHHHHHTCCSSEEEHHHHTTTHHHHHHHHH-HHTCCGGGHHHHHHHHHH
T ss_pred CchHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHhhhccCCeehHHHHhCcCCHHHHHH-HcCCCHHHHHHHHHHHHH
Confidence 99999999997 588998888877665543 2234788999999 899988765555554444
Q ss_pred HHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 149 ITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 149 ~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
+..... .++.+.++ .....++..+..+.+.+++.+.+++++++ ...|+++.|++
T Consensus 180 ~~~~~~------~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~i~~r~~~----------~~~d~l~~ll~ 233 (418)
T 3r9b_A 180 LAAALD------PFLALTGE--TSDLFDEQMKAGMWLRDYLRALIDERRRT----------PGEDLMSGLVA 233 (418)
T ss_dssp HHHTTS------CHHHHHSS--CCTTHHHHHHHHHHHHHHHHHHHHHTTTS----------CCSSHHHHHHH
T ss_pred HHhhcC------cccccccc--CHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCccHHHHHHH
Confidence 333211 11111111 12234566777888888888888877642 25788888773
No 56
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide antibiotics, 12- and 14- carbon macrolactone monooxygenase, heme; HET: HEM; 1.92A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.61 E-value=1.5e-14 Score=120.26 Aligned_cols=173 Identities=17% Similarity=0.242 Sum_probs=116.8
Q ss_pred ccCCCCccHHHHHHHhhcCCceEEEc-CCcCEEEeccHHHHHHHHHhCCCccCCCCC-Cchhh--hhhc--------C-C
Q 048376 12 QLAGSLPHHRLRDLTNKYGPLMLLQL-GQVPAIIVSSPQVAKEVMKTHDVVFASRPH-FPPAQ--IISY--------N-Y 78 (221)
Q Consensus 12 ~l~~~~~~~~~~~~~~~YG~i~~l~~-g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~-~~~~~--~~~~--------~-~ 78 (221)
.+ ..+++..+.+| ++||||+++++ |+.++|+|+||++++++|.++. |+.++. ..... .+.. . +
T Consensus 14 ~~-~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (411)
T 1gwi_A 14 PF-VTDLDGESARL-RAAGPLAAVELPGGVPVWAVTHHAEAKALLTDPR--LVKDINVWGAWRRGEIPADWPLIGLANPG 89 (411)
T ss_dssp TT-CSCHHHHHHHH-HHTCSEEEEEETTTEEEEEECSHHHHHHHHTCTT--EECCGGGCHHHHTTCSCTTCTTHHHHSCC
T ss_pred cc-cCChHHHHHHH-HHhCCeeeeecCCCccEEEEeCHHHHHHHHcCCc--cccCcccccccccccCCcccchhhhhccc
Confidence 44 45788899999 99999999998 9999999999999999998763 555541 11100 0000 1 2
Q ss_pred CceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH-------------------HHHH-HHHHHHHHHHHhCCCCCC
Q 048376 79 RDIVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK-------------------SKIY-SLMYGITSRAAFGNRSRD 138 (221)
Q Consensus 79 ~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~-------------------~~~~-~~~~~vi~~~~fG~~~~~ 138 (221)
.+++ ..+|+.|+++||++ .+.|+.+.++.+.+++++ ..+. .++.+||+. +||.+.+.
T Consensus 90 ~~l~-~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~ 166 (411)
T 1gwi_A 90 RSML-TVDGAEHRRLRTLV-AQALTVRRVEHMRGRITELTDRLLDELPADGGVVDLKAAFAYPLPMYVVAD-LMGIEEAR 166 (411)
T ss_dssp SSGG-GCCHHHHHHHHHHH-TTTSCHHHHHTTHHHHHHHHHHHHHTSCCSCCCEEHHHHTTTHHHHHHHHH-HHTCCGGG
T ss_pred cccc-cCCcHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhHHHHHHHHH-HhCCCHHH
Confidence 3444 45799999999996 578998888777655543 2333 488999996 79988765
Q ss_pred hhHHHHHHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHh
Q 048376 139 QEAFASVRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVL 218 (221)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~l 218 (221)
.+.+......++.. ..+ .++..+....+.+++.+.|+++++. ...|+++.|
T Consensus 167 ~~~~~~~~~~~~~~--------~~~-----------~~~~~~~~~~~~~~~~~~i~~r~~~----------~~~d~l~~l 217 (411)
T 1gwi_A 167 LPRLKVLFEKFFST--------QTP-----------PEEVVATLTELASIMTDTVAAKRAA----------PGDDLTSAL 217 (411)
T ss_dssp HHHHHHHHHHHHCT--------TSC-----------HHHHHHHHHHHHHHHHHHHHHHHHS----------CCSSHHHHH
T ss_pred HHHHHHHHHHHhcc--------CCC-----------hHHHHHHHHHHHHHHHHHHHHHHhC----------CCCCHHHHH
Confidence 44554444332210 000 1344566777888888988887652 236888887
Q ss_pred hc
Q 048376 219 LK 220 (221)
Q Consensus 219 l~ 220 (221)
+.
T Consensus 218 l~ 219 (411)
T 1gwi_A 218 IQ 219 (411)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 57
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans} SCOP: a.104.1.0 PDB: 3lxi_A*
Probab=99.60 E-value=2.4e-14 Score=119.28 Aligned_cols=176 Identities=14% Similarity=0.106 Sum_probs=117.8
Q ss_pred CCccHHHHHHHhhcC-CceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCCCceeeCCCChHHHHHH
Q 048376 16 SLPHHRLRDLTNKYG-PLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNYRDIVFSPYGDSWKQLR 94 (221)
Q Consensus 16 ~~~~~~~~~~~~~YG-~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~R 94 (221)
.+|+..+.++.+++| ||+.+..|+ +++||+||++|+++| ++.+.|++|+...........+.++ +..+|+.|+++|
T Consensus 38 ~dp~~~~~~lr~~~G~pv~~~~~~~-~~~vv~~~~~v~~vl-~~~~~f~~~~~~~~~~~~~~~~~~~-~~~dg~~h~~~R 114 (421)
T 3lxh_A 38 QGFHEAWKRVQQPDTPPLVWTPFTG-GHWIATRGTLIDEIY-RSPERFSSRVIWVPREAGEAYDMVP-TKLDPPEHTPYR 114 (421)
T ss_dssp GCHHHHHHHHCCTTCCSEEEESSTT-SEEEECSHHHHHHHH-TCTTTEETTCCSSSHHHHHHCCCTT-TTCCTTTHHHHH
T ss_pred cChhHHHHHHHhcCCCCeEeccCCC-CeEEEcCHHHHHHHH-cChhhccCCcccCCcccccccccCC-ccCCcHHHHHHH
Confidence 367888888887766 899999876 599999999999999 5667999998532222221122343 445799999999
Q ss_pred HHHHHhhcCHHHHHHhHHHHHH------------------HHH-HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHcCC
Q 048376 95 KICVSELLSAKRVQSFQSIREK------------------SKI-YSLMYGITSRAAFGNRSRDQEAFASVRGEITKLMSG 155 (221)
Q Consensus 95 r~~~~~~~~~~~~~~~~~i~~~------------------~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~ 155 (221)
|++ .+.|++..++.+.+.+++ ..+ ..++.++|+. +||...+..+.+......++..
T Consensus 115 ~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~d~~~~~~~~~~~~v~~~-~~G~~~~~~~~~~~~~~~~~~~--- 189 (421)
T 3lxh_A 115 KAI-DKGLNLAEIRKLEDQIRTIAVEIIEGFADRGHCEFGSEFSTVFPVRVFLA-LAGLPVEDATKLGLLANEMTRP--- 189 (421)
T ss_dssp HHH-HHHHSHHHHHTTHHHHHHHHHHHHHTTTTTSEEEHHHHTTTTHHHHHHHH-HHTCCGGGHHHHHHHHHHHHSC---
T ss_pred HHH-hhhcCHHHHHHHHHHHHHHHHHHHHHHhhcCCeehHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHhcc---
Confidence 996 578888888877655543 222 3456677765 5898765545554444433211
Q ss_pred CccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 156 FNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 156 ~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
...+| ....++..+..+.+.+++.+.|++++++ ...|+++.|+.
T Consensus 190 ---~~~~p--------~~~~~~~~~~~~~~~~~~~~~i~~r~~~----------~~~dll~~ll~ 233 (421)
T 3lxh_A 190 ---SGNTP--------EEQGRSLEAANKGFFEYVAPIIAARRGG----------SGTDLITRILN 233 (421)
T ss_dssp ---CCSSH--------HHHHHHHHHHHHHHHHHHHHHHHHHTTC----------CCCSHHHHHHT
T ss_pred ---ccCCC--------chhHHHHHHHHHHHHHHHHHHHHHHHhC----------CCCCHHHHHHh
Confidence 01112 1123556677888888999988887653 24788888874
No 58
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A {Streptomyces natalensis} PDB: 2x9p_A*
Probab=99.59 E-value=3.6e-14 Score=117.74 Aligned_cols=167 Identities=15% Similarity=0.203 Sum_probs=113.7
Q ss_pred CCCccHHHHHHHhhcCCceEEEc-CCcCEEEeccHHHHHHHHHhCCCccCCCCCCc-hhhhhhcCCCc--eeeCCCC---
Q 048376 15 GSLPHHRLRDLTNKYGPLMLLQL-GQVPAIIVSSPQVAKEVMKTHDVVFASRPHFP-PAQIISYNYRD--IVFSPYG--- 87 (221)
Q Consensus 15 ~~~~~~~~~~~~~~YG~i~~l~~-g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~-~~~~~~~~~~~--~~~~~~g--- 87 (221)
..+++..+.+| ++||||+++++ |++++|+|+||++++++|.++ .|++++... ...... .+.+ +++. +|
T Consensus 25 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~-~~~~~~l~~~-~g~~~ 99 (404)
T 2xbk_A 25 MLKLSPLLRAL-QDRGPIHRVRTPAGDEAWLVTRHAELKQLLHDE--RIGRTHPDPPSAAQYV-RSPFLDLLIS-DADAE 99 (404)
T ss_dssp TTBCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHTTCT--TEESBCSSGGGSCCSS-CCHHHHTTCB-CSCHH
T ss_pred ccCccHHHHHH-HhhCCEeeeccCCCceEEEEcCHHHHHHHHcCC--CCCCCccccccCCccc-ccccccceee-CCCCC
Confidence 34678999999 99999999997 899999999999999999875 588887532 111111 1234 4444 69
Q ss_pred ---hHHHHHHHHHHHhhcCHHHHHHhHHHHHH-------------------HHH-HHHHHHHHHHHHhCCCCCChhHHHH
Q 048376 88 ---DSWKQLRKICVSELLSAKRVQSFQSIREK-------------------SKI-YSLMYGITSRAAFGNRSRDQEAFAS 144 (221)
Q Consensus 88 ---~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~-------------------~~~-~~~~~~vi~~~~fG~~~~~~~~~~~ 144 (221)
+.|+++||++ .+.|++..++.+.+.+++ ..+ ..++.++|+. +||.+++..+.+..
T Consensus 100 ~~~~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~g~~~d~~~~~~~~~~~~vi~~-~~G~~~~~~~~~~~ 177 (404)
T 2xbk_A 100 SGRRQHAETRRLL-TPLFSARRVLEMQPKVEEAADTLLDAFIAQGPPGDLHGELTVPFALTVLCE-VIGVPPQRRAELTT 177 (404)
T ss_dssp HHHHHHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHHTCSSEEHHHHTHHHHHHHHHHH-HHTCCGGGHHHHHH
T ss_pred CCCchHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHH
Confidence 9999999996 577888877777654443 233 4578899987 79988754444444
Q ss_pred HHHHHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHh
Q 048376 145 VRGEITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVL 218 (221)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~l 218 (221)
....+.. . .. .+ +..+....+.+++.+.|+++++. ...|+++.|
T Consensus 178 ~~~~~~~---------~---~~----~p----~~~~~~~~~~~~~~~~i~~r~~~----------~~~dll~~l 221 (404)
T 2xbk_A 178 LLAGIAK---------L---DD----RE----GAVRAQDDLFGYVAGLVEHKRAE----------PGPDIISRL 221 (404)
T ss_dssp HHHHHTB---------S---SC----HH----HHHHHHHHHHHHHHHHHHHHHHS----------CCSSHHHHH
T ss_pred HHHHHHh---------c---cC----cH----HHHHHHHHHHHHHHHHHHHHHhC----------CCCCHHHHh
Confidence 3332211 0 00 01 34556677888888888887753 135777654
No 59
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase, metal-binding, AN biosynthesis, TIE-ROD mechanism of action; HET: HEM; 1.59A {Saccharopolyspora erythraea} PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Probab=99.59 E-value=1.8e-14 Score=119.70 Aligned_cols=173 Identities=14% Similarity=0.163 Sum_probs=117.2
Q ss_pred CccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCCCceeeCCCChHHHHHHHH
Q 048376 17 LPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNYRDIVFSPYGDSWKQLRKI 96 (221)
Q Consensus 17 ~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~ 96 (221)
+++..+.+|.+ |||| |+|+.+++||+|+++|+++|.++ +.|++||... .......+.++++. +|+.|+++||+
T Consensus 29 ~p~~~~~~l~~-~gpv---~~~~~~~~vv~~~~~v~~vl~~~-~~f~~~~~~~-~~~~~~~~~~~~~~-~g~~~~~~R~~ 101 (411)
T 2jjn_A 29 ALLDWLGTMRE-KQPV---WQDRYGVWHVFRHADVQTVLRDT-ATFSSDPTRV-IEGASPTPGMIHEI-DPPEHRALRKV 101 (411)
T ss_dssp HHHHHHHHHHH-HCSE---EECTTSCEEECSHHHHHHHHHCT-TTEESCGGGG-STTCCCCTTCGGGC-CTTHHHHHHHH
T ss_pred ChHHHHHHHHH-hCCc---ccCCCCeEEECCHHHHHHHHcCc-ccccCccccc-CCcccccccccccC-CchHHHHHHHH
Confidence 45678888976 9998 78888999999999999999865 5799997432 11211123455444 69999999999
Q ss_pred HHHhhcCHHHHHHhHHHHHH----------------HHH-HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHcCCCccc
Q 048376 97 CVSELLSAKRVQSFQSIREK----------------SKI-YSLMYGITSRAAFGNRSRDQEAFASVRGEITKLMSGFNIA 159 (221)
Q Consensus 97 ~~~~~~~~~~~~~~~~i~~~----------------~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (221)
+ .+.|+++.++.+.+.+++ ..+ ..++++||+.+ ||.+.+..+.+......+....
T Consensus 102 ~-~~~fs~~~l~~~~~~i~~~~~~ll~~~~~~~d~~~~~~~~~~~~vi~~~-fG~~~~~~~~~~~~~~~~~~~~------ 173 (411)
T 2jjn_A 102 V-SSAFTPRTISDLEPRIRDVTRSLLADAGESFDLVDVLAFPLPVTIVAEL-LGLPPMDHEQFGDWSGALVDIQ------ 173 (411)
T ss_dssp H-HHHSCHHHHHTTHHHHHHHHHHHHHTSCSEEEHHHHTTTHHHHHHHHHH-HTCCSCCCSTTCCHHHHHHHSC------
T ss_pred h-hhhcCHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhcc------
Confidence 7 577888888777655543 133 46899999998 9998765444433333333211
Q ss_pred cccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 160 DMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 160 ~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
.|. ++ ++...++..+....+.+++.+.|++++++ ...|+++.|++
T Consensus 174 --~~~--~~--~p~~~~~~~~~~~~~~~~~~~~i~~r~~~----------~~~d~l~~ll~ 218 (411)
T 2jjn_A 174 --MDD--PT--DPALAERIADVLNPLTAYLKARCAERRAD----------PGDDLISRLVL 218 (411)
T ss_dssp --CSC--TT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHS----------CCSSHHHHHHH
T ss_pred --Ccc--cc--chHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCCCHHHHHHh
Confidence 121 11 01223455667778888999999888752 24688888764
No 60
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein, oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB: 3nc5_A* 3nc6_A* 3nc7_A*
Probab=99.58 E-value=1.3e-14 Score=121.65 Aligned_cols=174 Identities=11% Similarity=0.195 Sum_probs=110.2
Q ss_pred CccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCCCceeeCCCChHHHHHHHH
Q 048376 17 LPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNYRDIVFSPYGDSWKQLRKI 96 (221)
Q Consensus 17 ~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~ 96 (221)
+|+..+.++ ++||||+++..++ +++|++|++|+++|.++. .|++++......... +.+.++..+|+.|+++||+
T Consensus 54 ~p~~~~~~l-r~~gpv~~~~~~~--~~vv~~~~~v~~vl~~~~-~f~~~~~~~~~~~~~--~~~~l~~~dg~~h~~~Rr~ 127 (441)
T 3nc3_A 54 NPYAYFSQL-REEDPVHYEESID--SYFISRYHDVRYILQHPD-IFTTKSLVERAEPVM--RGPVLAQMHGKEHSAKRRI 127 (441)
T ss_dssp CGGGTHHHH-HHHCSEEEETTTT--EEEECCHHHHHHHHHCTT-TEECCCTTSCCCCSC--C-------------CCHHH
T ss_pred ChHHHHHHH-HhcCCEEEeCCCC--EEEEcCHHHHHHHhcCcc-ccccccccccccccc--CCCccccCCcHHHHHHHHH
Confidence 566667665 7899999987766 899999999999998764 499988643333221 2332344569999999999
Q ss_pred HHHhhcCHHHHHHhHHHHHH-------------------HHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHcCCCc
Q 048376 97 CVSELLSAKRVQSFQSIREK-------------------SKIYSLMYGITSRAAFGNRSRDQEAFASVRGEITKLMSGFN 157 (221)
Q Consensus 97 ~~~~~~~~~~~~~~~~i~~~-------------------~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~ 157 (221)
+ .+.|++..++.+.+.+++ +....++.+||+. +||...+..+.+......+........
T Consensus 128 ~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~dl~~~~~~~~~~~vi~~-l~G~~~~~~~~~~~~~~~~~~~~~~~~ 205 (441)
T 3nc3_A 128 V-VRSFIGDALDHLSPLIKQNAENLLAPYLERGKSDLVNDFGKTFAVCVTMD-MLGLDKRDHEKISEWHSGVADFITSIS 205 (441)
T ss_dssp H-HHHHHHTHHHHHHHHHHHHHHHHHTTTTTTTEEECCCCCHHHHHHHHHHH-HTTCCGGGHHHHHHHHHHHHHHHHCSC
T ss_pred H-HhhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHhccccc
Confidence 7 577888888877665544 3345688999998 589887665555555555444322110
Q ss_pred cccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 158 IADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 158 ~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
.+ ........+..+.+.+++.++|+++++. ...|+++.|+.
T Consensus 206 ----~~--------~~~~~~~~~~~~~l~~~~~~~i~~rr~~----------~~~Dll~~Ll~ 246 (441)
T 3nc3_A 206 ----QS--------PEARAHSLWCSEQLSQYLMPVIKERRVN----------PGSDLISILCT 246 (441)
T ss_dssp ----CC--------HHHHHHHHHHHHHHHHHHHHHHHHHTTS----------CCSSHHHHHCC
T ss_pred ----CC--------hHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCCCHHHHHHH
Confidence 01 1112445566778888888888887642 24688888874
No 61
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta binding protein; HET: HEM; 2.47A {Micromonospora echinospora}
Probab=99.58 E-value=2e-14 Score=118.89 Aligned_cols=172 Identities=14% Similarity=0.122 Sum_probs=114.1
Q ss_pred CccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhh------hhhcC-CCceeeCCCChH
Q 048376 17 LPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQ------IISYN-YRDIVFSPYGDS 89 (221)
Q Consensus 17 ~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~------~~~~~-~~~~~~~~~g~~ 89 (221)
+++..+.++ ++||||++ + | .+++||+||++|+++|.+ ..|++|+...... .+... +.++++. +|+.
T Consensus 14 ~p~~~~~~l-~~yGpv~~-~-g-~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~~ 86 (397)
T 3buj_A 14 DPYPSYHWL-LRHDPVHR-G-A-HRVWYVSRFADVRAVLGD--ERFARTGIRRFWTDLVGPGLLAEIVGDIILFQ-DEPD 86 (397)
T ss_dssp CCHHHHHHH-HHHCSEEE-C-G-GGCEEECSHHHHHHHHTC--TTEESHHHHHHHHHHHCSSHHHHHHTTCGGGC-CTTH
T ss_pred CchHHHHHH-HhcCCeee-C-C-CCeEEEcCHHHHHHHHcC--CCcccCcccccccccccccccccccccccccC-Cchh
Confidence 567777766 69999998 7 5 789999999999999986 3788775321110 11100 3455544 6999
Q ss_pred HHHHHHHHHHhhcCHHHHHHhHHHHHH------------------HH-HHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 048376 90 WKQLRKICVSELLSAKRVQSFQSIREK------------------SK-IYSLMYGITSRAAFGNRSRDQEAFASVRGEIT 150 (221)
Q Consensus 90 Wk~~Rr~~~~~~~~~~~~~~~~~i~~~------------------~~-~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~ 150 (221)
|+++||++ .+.|++..++.+.+.+++ .. ...++.+||+.+ ||.+++..+.+......+.
T Consensus 87 h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~dl~~~~~~~~~~~vi~~~-~G~~~~~~~~~~~~~~~~~ 164 (397)
T 3buj_A 87 HGRLRGVV-GPAFSPSALRRLEPVIAGTVDDLLRPALARGAMDVVDELAYPLALRAVLGL-LGLPAADWGAVGRWSRDVG 164 (397)
T ss_dssp HHHHHHHH-GGGSSTTTTGGGHHHHHHHHHHHHHHHHTTTEEEHHHHTHHHHHHHHHHHH-HTCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHhhcCCeehHHHHHHHhHHHHHHHH-hCCCHHHHHHHHHHHHHHH
Confidence 99999997 467887766666554443 23 357889999998 9998765545544444333
Q ss_pred HHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 151 KLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 151 ~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
.... +. +. ....++..+..+.+.+++.+.|+++++. ...|+++.|++
T Consensus 165 ~~~~--------~~---~~--~~~~~~~~~~~~~~~~~~~~~i~~r~~~----------~~~dll~~ll~ 211 (397)
T 3buj_A 165 RTLD--------RG---AS--AEDMRRGHAAIAEFADYVERALARRRRE----------GGEDLLALMLD 211 (397)
T ss_dssp GGGC--------SS---CC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------CCCSHHHHHHH
T ss_pred hhcC--------CC---CC--hHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CCCCHHHHHHH
Confidence 2211 00 11 1123455667778888999999888753 14688888764
No 62
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein, vancomycin biosynthes carrier protein, oxidoreductase; HET: HEM; 2.10A {Amycolatopsis balhimycina}
Probab=99.58 E-value=2.2e-14 Score=119.46 Aligned_cols=174 Identities=16% Similarity=0.140 Sum_probs=117.1
Q ss_pred CCccHHHHHHHhhcCCceEEE-cCC-cCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhc---C-CCceeeCCCChH
Q 048376 16 SLPHHRLRDLTNKYGPLMLLQ-LGQ-VPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISY---N-YRDIVFSPYGDS 89 (221)
Q Consensus 16 ~~~~~~~~~~~~~YG~i~~l~-~g~-~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~---~-~~~~~~~~~g~~ 89 (221)
.+|+..+.+|.+ ||||+++. .|+ .+++||+++++|+++| ++.+.|++||.......... . +.+ ++..+|+.
T Consensus 37 ~dp~~~~~~lr~-~gpV~~~~~~g~~~~~~vv~~~~~v~~vl-~~~~~fs~~~~~~~~~~~~~~~~~~~~~-l~~~dg~~ 113 (415)
T 3mgx_A 37 LERHARWRELAA-EDAMVWSDPGSSPSGFWSVFSHRACAAVL-APSAPLTSEYGMMIGFDRDHPDNSGGRM-MVVSEHEQ 113 (415)
T ss_dssp TTHHHHHHHHHH-HTCCEEECSSSSSSCEEEECSHHHHHHHS-CTTSSEECTTCSSTTCCSSSCCTTTTTS-GGGCCHHH
T ss_pred CChhHHHHHHHh-cCCEeeccCCCCcCCEEEEecHHHHHHHH-hChhhhcCCccccccccccccccccCCC-ccccCcHH
Confidence 367888888887 99999996 665 8999999999999999 45568999986433211100 1 223 34457999
Q ss_pred HHHHHHHHHHhhcCHHHHHHhHHHHHH------------------HHH-HHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 048376 90 WKQLRKICVSELLSAKRVQSFQSIREK------------------SKI-YSLMYGITSRAAFGNRSRDQEAFASVRGEIT 150 (221)
Q Consensus 90 Wk~~Rr~~~~~~~~~~~~~~~~~i~~~------------------~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~ 150 (221)
|+++||++ .+.|++..++.+.+.+++ ..+ ..++.+||+. +||...+..+.+......+.
T Consensus 114 h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~dl~~~~~~~~~~~vi~~-l~G~~~~~~~~~~~~~~~~~ 191 (415)
T 3mgx_A 114 HRKLRKLV-GPLLSRAAARKLAERVRIEVGDVLGRVLDGEVCDAATAIGPRIPAAVVCE-ILGVPAEDEDMLIDLTNHAF 191 (415)
T ss_dssp HHHHHHHH-GGGSSHHHHHHSHHHHHHHHHHHTTTSSSSSCEESTTTTTTHHHHHHHHH-HHTCCGGGHHHHHHHHHHHT
T ss_pred HHHHHHHh-HhhhCHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHH
Confidence 99999996 688999888888766654 334 5699999998 58976554444444443322
Q ss_pred HHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 151 KLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 151 ~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
. ... ..+.|. ...+..+.+.+++.+.|++++++ ...|+++.|++
T Consensus 192 ~---~~~-~~~~~~------------~~~~~~~~l~~~~~~~i~~rr~~----------~~~dll~~ll~ 235 (415)
T 3mgx_A 192 G---GED-ELFDGM------------TPRQAHTEILVYFDELITARRKE----------PGDDLVSTLVT 235 (415)
T ss_dssp S---CCC-----CC------------CHHHHHHHHHHHHHHHHHHHHHS----------CCSSHHHHHHH
T ss_pred c---ccC-cccchH------------HHHHHHHHHHHHHHHHHHHHHhC----------CCCCHHHHHHh
Confidence 1 110 111110 01245667888888989888753 24789998874
No 63
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450 vancomycin, oxidoreductase; HET: HEM; 1.70A {Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A* 1lgf_A*
Probab=99.55 E-value=9.2e-14 Score=114.99 Aligned_cols=166 Identities=14% Similarity=0.208 Sum_probs=105.1
Q ss_pred HHHHHHhhcCCceEEEcC-Cc---CEEEeccHHHHHHHHHhCCCccCCCCC------Cchhhhhh--cCCCceeeCCCCh
Q 048376 21 RLRDLTNKYGPLMLLQLG-QV---PAIIVSSPQVAKEVMKTHDVVFASRPH------FPPAQIIS--YNYRDIVFSPYGD 88 (221)
Q Consensus 21 ~~~~~~~~YG~i~~l~~g-~~---~~vvv~~~~~ike~l~~~~~~f~~Rp~------~~~~~~~~--~~~~~~~~~~~g~ 88 (221)
.+.+|.++ |||++++++ +. ++|||+||++|+++|+++ ..|++||. ........ ..+.++++. +|+
T Consensus 18 ~~~~l~~~-Gpv~~~~~~~g~~~~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~ 94 (398)
T 1lfk_A 18 PADELLAA-GALTRVTIGSGADAETHWMATAHAVVRQVMGDH-QQFSTRRRWDPRDEIGGKGIFRPRELVGNLMDY-DPP 94 (398)
T ss_dssp ECHHHHTS-CSEEEEC------CCCEEEECSHHHHHHHHHCT-TTEEECTTCCC-------------CCTTCGGGC-CTT
T ss_pred hhHHHHhc-CCccccccCCCCcccceEEEecHHHHHHHHhhC-cccccccccccccccCCcccccccccccCcccc-CCH
Confidence 34558777 999999875 45 899999999999999544 36888875 11111111 123455554 699
Q ss_pred HHHHHHHHHHHhhcCHHHHHHhHHHHHH-------------------HHHHH-HHHHHHHHHHhCCCCCChhHHHHHHHH
Q 048376 89 SWKQLRKICVSELLSAKRVQSFQSIREK-------------------SKIYS-LMYGITSRAAFGNRSRDQEAFASVRGE 148 (221)
Q Consensus 89 ~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~-------------------~~~~~-~~~~vi~~~~fG~~~~~~~~~~~~~~~ 148 (221)
.|+++||++ .+.|+.+.++.+.+.+++ ..+.. ++.++|+. +||.+++..+.+......
T Consensus 95 ~~~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~~~~~~~~~~~ 172 (398)
T 1lfk_A 95 EHTRLRRKL-TPGFTLRKMQRMAPYIEQIVNDRLDEMERAGSPADLIAFVADKVPGAVLCE-LVGVPRDDRDMFMKLCHG 172 (398)
T ss_dssp HHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCSSEEHHHHTTTTHHHHHHHH-HHTCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHH-HhhhCHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHH
Confidence 999999997 467888887777655443 23443 67788887 599887644444333322
Q ss_pred HHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 149 ITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 149 ~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
++ .. .+..++..+....+.+++.+.|+++++. ...|+++.|++
T Consensus 173 ~~---------~~----------~~~~~~~~~~~~~~~~~~~~~i~~r~~~----------~~~dll~~ll~ 215 (398)
T 1lfk_A 173 HL---------DA----------SLSQKRRAALGDKFSRYLLAMIARERKE----------PGEGMIGAVVA 215 (398)
T ss_dssp TT---------CT----------TSCHHHHHHHHHHHHHHHHHHHHHHHHS----------CCSSHHHHHHH
T ss_pred HH---------hc----------ccchHHHHHHHHHHHHHHHHHHHHHHhC----------CCCCHHHHHHH
Confidence 11 00 0112445567778888899988888752 24688888764
No 64
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A {Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Probab=99.52 E-value=5.8e-14 Score=116.75 Aligned_cols=170 Identities=12% Similarity=0.121 Sum_probs=110.8
Q ss_pred CCccHHHHHHHhhcCCceEEEcCC--cCEEEeccHHHHHHHHHhCCCccCCCCCCch----hhhhhcC-CCceeeCCCCh
Q 048376 16 SLPHHRLRDLTNKYGPLMLLQLGQ--VPAIIVSSPQVAKEVMKTHDVVFASRPHFPP----AQIISYN-YRDIVFSPYGD 88 (221)
Q Consensus 16 ~~~~~~~~~~~~~YG~i~~l~~g~--~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~----~~~~~~~-~~~~~~~~~g~ 88 (221)
..+|..+.++. +||||+++++|+ .++++|++|++++++|.+ ..|+.++.... ...+... +.+++ ..+|+
T Consensus 27 ~~p~~~~~~l~-~~Gpv~~~~~~~g~~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~l~-~~dg~ 102 (411)
T 2dkk_A 27 PEFDPVLAELM-REGPLTRVRLPHGEGWAWLATRYDDVKAITND--PRFGRAEVTQRQITRLAPHFKPRPGSLA-FADQP 102 (411)
T ss_dssp SCCCHHHHHHH-TTCSEEEEECSBSBSCEEEECSHHHHHHHTTC--TTEESGGGGGSCBCBSSSCCCCCTTCST-TCCTT
T ss_pred ccccHHHHHHH-hcCCeEeeecCCCceeEEEEcCHHHHHHHHcC--CCcccCCCCCCCccccccchhccccccc-cCCch
Confidence 35668888887 899999999865 899999999999999976 36877754211 1111100 33444 44799
Q ss_pred HHHHHHHHHHHhhcCHHHHHHhHHHHHH-------------------HHHH-HHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 048376 89 SWKQLRKICVSELLSAKRVQSFQSIREK-------------------SKIY-SLMYGITSRAAFGNRSRDQEAFASVRGE 148 (221)
Q Consensus 89 ~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~-------------------~~~~-~~~~~vi~~~~fG~~~~~~~~~~~~~~~ 148 (221)
.|+++||++ .+.|+++.++.+.+.+++ ..+. .++.+||+. +||..++..+.+......
T Consensus 103 ~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~g~~~dl~~~~~~~~~~~vi~~-l~G~~~~~~~~~~~~~~~ 180 (411)
T 2dkk_A 103 DHNRLRRAV-AGAFTVGATKRLRPRAQEILDGLVDGILAEGPPADLVERVLEPFPIAVVSE-VMGVPAADRERVHSWTRQ 180 (411)
T ss_dssp HHHHHHHHH-GGGSSHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEHHHHTTTHHHHHHHHH-HHTCCSSHHHHHHHHHGG
T ss_pred HHHHHHHHh-hHhhCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHH
Confidence 999999996 577998888877655443 2343 588999998 599887643333222211
Q ss_pred HHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 149 ITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 149 ~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
. ....+ . .++..+....+.+++.++|+++++. ...|+++.|+.
T Consensus 181 ----~-----~~~~~---------~-~~~~~~~~~~l~~~~~~~i~~r~~~----------~~~dll~~ll~ 223 (411)
T 2dkk_A 181 ----I-----ISTSG---------G-AEAAERAKRGLYGWITETVRARAGS----------EGGDVYSMLGA 223 (411)
T ss_dssp ----G-----CSSCS---------C-SHHHHHHHHHHHHHHHHHHHTTTTC----------CSSCHHHHHHH
T ss_pred ----H-----Hhccc---------h-HHHHHHHHHHHHHHHHHHHHHHHhC----------CCCCHHHHHHH
Confidence 1 11111 0 1234456667777888877776532 23688887763
No 65
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A {Novosphingobium aromaticivorans} PDB: 3ofu_A*
Probab=99.52 E-value=1.3e-13 Score=113.98 Aligned_cols=169 Identities=16% Similarity=0.108 Sum_probs=111.5
Q ss_pred CCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCCCceeeCCCChHHHHHHH
Q 048376 16 SLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNYRDIVFSPYGDSWKQLRK 95 (221)
Q Consensus 16 ~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr 95 (221)
.+++..+.+|.++ |||+++..|+ +.+||+||++|+++|. +.+.|++||...........+.+ ++..+|+.|+++||
T Consensus 24 ~~p~~~~~~l~~~-Gpv~~~~~~~-~~~vv~~~~~v~~vl~-~~~~f~~~~~~~~~~~~~~~~~~-~~~~~g~~h~~~R~ 99 (396)
T 3oft_A 24 QDYFAAWKTLLDG-PGLVWSTANG-GHWIAARGDVVRELWG-DAERLSSQCLAVTPGLGKVMQFI-PLQQDGAEHKAFRT 99 (396)
T ss_dssp TCHHHHHHGGGGS-CSEEEECSTT-SEEEECSHHHHHHHHH-CTTTEESTTCCSSTTHHHHHCCT-TTTCCHHHHHHHHH
T ss_pred cChHHHHHHHHhc-CCeeeecCCC-CEEEEcCHHHHHHHHc-CcccccCCcccCCCccccccccC-ccccCCcHHHHHHH
Confidence 4788999999999 9999999984 6999999999999995 45689999843222111111223 34557999999999
Q ss_pred HHHHhhcCHHHHHHhHHHHHH------------------HHH-HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHcCCC
Q 048376 96 ICVSELLSAKRVQSFQSIREK------------------SKI-YSLMYGITSRAAFGNRSRDQEAFASVRGEITKLMSGF 156 (221)
Q Consensus 96 ~~~~~~~~~~~~~~~~~i~~~------------------~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~ 156 (221)
++ .+.|+...++.+.+.+++ ..+ ..++.++++. +||...+..+.+......++. .
T Consensus 100 ~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~d~~~~~~~~~~~~v~~~-~~G~~~~~~~~~~~~~~~~~~---~- 173 (396)
T 3oft_A 100 PV-MKGLASRFVVALEPKVQAVARKLMESLRPRGSCDFVSDFAEILPLNIFLT-LIDVPLEDRPRLRQLGVQLTR---P- 173 (396)
T ss_dssp HH-HHHTCHHHHHHHHHHHHHHHHHHHHHHGGGSEEEHHHHTTTTHHHHHHHH-HTTCCGGGHHHHHHHHHHHHS---C-
T ss_pred Hh-hhhhCHHHHHHHHHHHHHHHHHHHHHhhhcCCccHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHhC---C-
Confidence 97 578898888877665543 122 3345555554 578665444444333332211 0
Q ss_pred ccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 157 NIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 157 ~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
.. .++..+..+.+.+++.+.|++++++ ...|+++.|++
T Consensus 174 --------~~--------~~~~~~~~~~~~~~~~~~i~~r~~~----------~~~d~l~~ll~ 211 (396)
T 3oft_A 174 --------DG--------SMTVEQLKQAADDYLWPFIEKRMAQ----------PGDDLFSRILS 211 (396)
T ss_dssp --------CS--------SCCHHHHHHHHHHHHHHHHHHHHHS----------CCSSHHHHHHT
T ss_pred --------CC--------HHHHHHHHHHHHHHHHHHHHHHHhC----------CCCCHHHHHHH
Confidence 00 1123456677888888989888763 24788888875
No 66
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid biosynthesis, heme, iron, synthesis, lyase, metal-binding, oxylipin biosynthesis; HET: HEM T25; 1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Probab=99.48 E-value=4.9e-14 Score=119.49 Aligned_cols=134 Identities=10% Similarity=0.150 Sum_probs=89.3
Q ss_pred CCCCcccccccccC----CCCccHHHHHHHhhcCC-ceEEEcCCcCE-------EEeccHHHHHHHHHh----CCCcc-C
Q 048376 1 PWKLPLIGNLHQLA----GSLPHHRLRDLTNKYGP-LMLLQLGQVPA-------IIVSSPQVAKEVMKT----HDVVF-A 63 (221)
Q Consensus 1 P~~~PiiGnl~~l~----~~~~~~~~~~~~~~YG~-i~~l~~g~~~~-------vvv~~~~~ike~l~~----~~~~f-~ 63 (221)
|+|||+|||++++. ...++..+.++.++||+ ||++++|+.++ |++++++..+.++.. +.+.| .
T Consensus 33 p~g~P~iG~~~~~~~~~~~~~~~~f~~~~~~kyG~~Vf~~~l~~~~~vv~~p~~v~~~~~~~~~~l~~~~~v~k~~~~~~ 112 (495)
T 3dsk_A 33 NYGLPIVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNMPPGAFIAENPQVVALLDGKSFPVLFDVDKVEKKDLLTG 112 (495)
T ss_dssp CCCSTTHHHHHHHHHHHTTSCHHHHHHHHHHHHTCSEEEEECSCCTTTCSCCEEEEECSTTTGGGGGCTTTEECSSCTTS
T ss_pred CCCCCccchHHHHHHHHHhcCcHHHHHHHHHHhCCceEeecCCCCCCccCCCCEEEEeCCcceeeecccccccccccccc
Confidence 45799999998874 35778899999999999 99999999999 666666655544422 11233 2
Q ss_pred CCCCCchhhhhhcCCCceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH----------------------HHHHH
Q 048376 64 SRPHFPPAQIISYNYRDIVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK----------------------SKIYS 121 (221)
Q Consensus 64 ~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~----------------------~~~~~ 121 (221)
..|.. ...++..+....+..+|+.|+++|+++. ..|+... +.+.+.+++ +.+..
T Consensus 113 ~~~~~--~~l~g~~~~~~~~~~~g~~h~~~R~~~~-~~f~~~~-~~~~~~i~~~~~~ll~~~~~~~~~~~~vdl~~~~~~ 188 (495)
T 3dsk_A 113 TYMPS--TELTGGYRILSYLDPSEPKHEKLKNLLF-FLLKSSR-NRIFPEFQATYSELFDSLEKELSLKGKADFGGSSDG 188 (495)
T ss_dssp SSCCC--GGGGTTCCCGGGCCTTSHHHHHHHHHHH-HHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHHHSSEESHHHHHH
T ss_pred cCCCC--ccccCCCcceeeeCCCchHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHH
Confidence 33432 2333211122344457999999999975 4455322 222221111 67889
Q ss_pred HHHHHHHHHHhCCCCCC
Q 048376 122 LMYGITSRAAFGNRSRD 138 (221)
Q Consensus 122 ~~~~vi~~~~fG~~~~~ 138 (221)
++.++|++++||.+.+.
T Consensus 189 ~~~~~i~~~~~G~~~~~ 205 (495)
T 3dsk_A 189 TAFNFLARAFYGTNPAD 205 (495)
T ss_dssp HHHHHHHHHHHSCCGGG
T ss_pred HHHHHHHHHHcCCCcch
Confidence 99999999999988754
No 67
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450 fold, structural genomics, PSI, protein structure initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A* 3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Probab=99.48 E-value=8.5e-14 Score=115.13 Aligned_cols=123 Identities=14% Similarity=0.183 Sum_probs=86.2
Q ss_pred CCCccHHHHHHHhhcCCceEEEc-CCcCEEEeccHHHHHHHHHhCCCccC-C-CCCC--chhh--hhhc-CCCceeeCCC
Q 048376 15 GSLPHHRLRDLTNKYGPLMLLQL-GQVPAIIVSSPQVAKEVMKTHDVVFA-S-RPHF--PPAQ--IISY-NYRDIVFSPY 86 (221)
Q Consensus 15 ~~~~~~~~~~~~~~YG~i~~l~~-g~~~~vvv~~~~~ike~l~~~~~~f~-~-Rp~~--~~~~--~~~~-~~~~~~~~~~ 86 (221)
..+++..+.+| ++||||+++++ |++++|||+|+++++++|.++ .|+ + ||.. +... .+.. .+.++++.
T Consensus 15 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 89 (396)
T 1n40_A 15 GDRIPDAVAEL-RTREPIRKVRTITGAEAWLVSSYALCTQVLEDR--RFSMKETAAAGAPRLNALTVPPEVVNNMGNI-- 89 (396)
T ss_dssp SSSCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHHTCT--TEESGGGGSTTCCCSSCCSSCGGGGGHHHHH--
T ss_pred ccCccHHHHHH-HHhCCeeEeecCCCceEEEEecHHHHHHHHhCC--CcccccCccccccccccccCCchhhhhhhhH--
Confidence 45788999999 99999999998 899999999999999999875 487 6 6532 1111 1110 12344433
Q ss_pred ChHHHHHHHHHHHhhcCHHHHHHhHHHHHH-------------------HHH-HHHHHHHHHHHHhCCCCCChhHHHHHH
Q 048376 87 GDSWKQLRKICVSELLSAKRVQSFQSIREK-------------------SKI-YSLMYGITSRAAFGNRSRDQEAFASVR 146 (221)
Q Consensus 87 g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~-------------------~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~ 146 (221)
.|+++||++. +.|+++ ++.+.+.+++ ..+ ..++.++|+. +||.+++..+.+....
T Consensus 90 --~h~~~R~~~~-~~fs~~-~~~~~~~i~~~~~~l~~~l~~~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~~~~~~~~~ 164 (396)
T 1n40_A 90 --ADAGLRKAVM-KAITPK-APGLEQFLRDTANSLLDNLITEGAPADLRNDFADPLATALHCK-VLGIPQEDGPKLFRSL 164 (396)
T ss_dssp --HHTTCHHHHH-HHTSSC-STTHHHHHHHHHHHHHHHHHHHCSCEETTTTTHHHHHHHHHHH-HHTCCGGGHHHHHHTH
T ss_pred --HHHHHHHHHH-HhhChH-HHHhHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHhHHHHHHH-HhCCChhhHHHHHHHH
Confidence 9999999975 567776 6666544432 133 4688999998 8999876544444443
Q ss_pred H
Q 048376 147 G 147 (221)
Q Consensus 147 ~ 147 (221)
+
T Consensus 165 ~ 165 (396)
T 1n40_A 165 S 165 (396)
T ss_dssp H
T ss_pred H
Confidence 3
No 68
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Probab=99.44 E-value=6.9e-13 Score=108.61 Aligned_cols=165 Identities=13% Similarity=0.111 Sum_probs=107.7
Q ss_pred ccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCC-c-hh-----h-hhhcC---CCceeeCCC
Q 048376 18 PHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHF-P-PA-----Q-IISYN---YRDIVFSPY 86 (221)
Q Consensus 18 ~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~-~-~~-----~-~~~~~---~~~~~~~~~ 86 (221)
|+..+.+| ++||||++++ | +++|++|++|+++|.++ +.|+++|.. + .. . .+. + +.++++. +
T Consensus 1 p~~~~~~l-r~~gpv~~~~-g---~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~-d 72 (367)
T 3b4x_A 1 MYDWFKQM-RKESPVYYDG-K---VWNLFKYEDCKMVLNDH-KRFSSNLTGYNDKLEMLRSGKVFF-DIPTRYTMLTS-D 72 (367)
T ss_dssp CHHHHHHH-HHHCSEEECS-S---SEEECSHHHHHHHHHCT-TTEECCCSSTTTTHHHHHHTCCCC-CCGGGSSGGGC-C
T ss_pred CCHHHHHH-HHcCCceeeC-C---EEEEecHHHHHHHHcCc-hhhccCcccccccccccccccchh-hcccccccccC-C
Confidence 45677777 5799999888 5 89999999999999876 589998642 1 12 1 221 2 1455555 6
Q ss_pred ChHHHHHHHHHHHhhcCHHHHHHhHHHHHH---------------HHH-HHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 048376 87 GDSWKQLRKICVSELLSAKRVQSFQSIREK---------------SKI-YSLMYGITSRAAFGNRSRDQEAFASVRGEIT 150 (221)
Q Consensus 87 g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~---------------~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~ 150 (221)
|+.|+++||++ .+.|+++.++. ..+.+. ..+ ..++.+||+. +||.+ ++.+.+....+.+.
T Consensus 73 g~~h~~~R~~~-~~~fs~~~l~~-~~i~~~~~~l~~~l~g~~d~~~~~~~~~~~~vi~~-~~G~~-~~~~~~~~~~~~~~ 148 (367)
T 3b4x_A 73 PPLHDELRNLT-ADAFNPSNLPV-DFVREVTVKLLSELDEEFDVIESFAIPLPILVISK-MLGIN-PDVKKVKDWSDLVA 148 (367)
T ss_dssp TTHHHHHHHTT-GGGGSGGGSCH-HHHHHHHHHHHHTCCSEEEHHHHTTTHHHHHHHHH-HHTCC-CCHHHHHHHHHHHH
T ss_pred chhHHHHHHHH-HHhcCHhhhcc-hHHHHHHHHHHHhccCCcchHHHHHHhhHHHHHHH-HcCCC-CcHHHHHHHHHHHH
Confidence 99999999996 46788776655 222221 233 6789999999 79998 65445555544433
Q ss_pred HHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 151 KLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 151 ~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
.... ..|.. . ++. +..+.+.+++.+.|+++++. ...|+++.|+.
T Consensus 149 ~~~~------~~p~~-----~----~~~-~~~~~~~~~~~~~i~~r~~~----------~~~dll~~ll~ 192 (367)
T 3b4x_A 149 LRLG------RADEI-----F----SIG-RKYLELISFSKKELDSRKGK----------EIVDLTGKIAN 192 (367)
T ss_dssp TTTT------STTGG-----G----CCC-HHHHHHHHHHHHHHHHHTTT----------CCSSHHHHHHT
T ss_pred hccC------CChhh-----H----HHH-HHHHHHHHHHHHHHHHHhcC----------CCCCHHHHHHh
Confidence 2211 12311 1 111 45567778888888877542 24789998875
No 69
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase, oxidoreductase; HET: HEM; 2.00A {Sphingopyxis macrogoltabida}
Probab=99.43 E-value=6.3e-12 Score=104.94 Aligned_cols=176 Identities=11% Similarity=0.085 Sum_probs=112.3
Q ss_pred CccHHHHHHHhhcCCceEEEc-CCcCEEEeccHHHHHHHHHhCCCccCCCCC---Cchhh-----h-hhcCCCceeeCCC
Q 048376 17 LPHHRLRDLTNKYGPLMLLQL-GQVPAIIVSSPQVAKEVMKTHDVVFASRPH---FPPAQ-----I-ISYNYRDIVFSPY 86 (221)
Q Consensus 17 ~~~~~~~~~~~~YG~i~~l~~-g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~---~~~~~-----~-~~~~~~~~~~~~~ 86 (221)
+|+..+.+|.++ |||+.+.+ |+.+++||+++++|+++|.+. +.|++++. ..... . ....+.++ +..+
T Consensus 39 ~p~~~~~~lr~~-gpv~~~~~~~~~~~~vvt~~~~v~~vl~d~-~~fs~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~d 115 (426)
T 3rwl_A 39 SVGEYFKRLRKD-DPVHYCADSAFGPYWSITKYNDIMHVDTNH-DIFSSDAGYGGIIIDDGIQKGGDGGLDLPNF-IAMD 115 (426)
T ss_dssp CHHHHHHHHHHH-CSEEEESCCTTCSEEEECSHHHHHHHHHCT-TTEECCGGGTCSSSSCCC-------CCCCCG-GGCC
T ss_pred CccHHHHHHHhc-CCeeeccCCCCCCEEEEcCHHHHHHHHcCC-cccccccccCCCCcccccccccccccccCcc-cccC
Confidence 477888888876 99999987 567899999999999999765 56887752 11111 0 11112233 4457
Q ss_pred ChHHHHHHHHHHHhhcCHHHHHHhHHHHHH------------------HHH-HHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 048376 87 GDSWKQLRKICVSELLSAKRVQSFQSIREK------------------SKI-YSLMYGITSRAAFGNRSRDQEAFASVRG 147 (221)
Q Consensus 87 g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~------------------~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~ 147 (221)
|+.|+++||++ .+.|++..++.+.+.+++ ..+ ..++..+|+. +||...+..+.+....+
T Consensus 116 g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~dl~~~~~~~~~~~vi~~-l~G~~~~~~~~~~~~~~ 193 (426)
T 3rwl_A 116 RPRHDEQRKAV-SPIVAPANLAALEGTIRERVSKTLDGLPVGEEFDWVDRVSIEITTQMLAT-LFDFPFEERRKLTRWSD 193 (426)
T ss_dssp TTHHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHTSCSSSCEEHHHHTHHHHHHHHHHH-HHTCCGGGTHHHHHHHH
T ss_pred chHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHH
Confidence 99999999996 578998888877665554 333 5677777775 89986554444433322
Q ss_pred HHHHHcCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 148 EITKLMSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 148 ~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
. ..... .|.. ........+....+.+++.+++++++.. + ...|+++.|++
T Consensus 194 ~----~~~~~----~~~~------~~~~~~~~~~~~~~~~~~~~~i~~r~~~------~---~~~dll~~ll~ 243 (426)
T 3rwl_A 194 V----TTAAP----GGGV------VESWDQRKTELLECAAYFQVLWNERVNK------D---PGNDLISMLAH 243 (426)
T ss_dssp H----HTCCT----TSSS------CSSHHHHHHHHHHHHHHHHHHHHHHHTS------C---CCSSHHHHHHH
T ss_pred H----HHhcc----Cccc------cccHHHHHHHHHHHHHHHHHHHHHHhhc------C---CCCCHHHHHHh
Confidence 1 11100 0110 1112344456678888888888887321 1 35789988874
No 70
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A*
Probab=99.40 E-value=2.6e-12 Score=108.14 Aligned_cols=135 Identities=11% Similarity=0.127 Sum_probs=85.7
Q ss_pred CCCCcccccccccC----CC-CccHHHHHHHhhcCC-ceEEEcCCcCEEEe-------ccHHHHHHHHH----hCCCccC
Q 048376 1 PWKLPLIGNLHQLA----GS-LPHHRLRDLTNKYGP-LMLLQLGQVPAIIV-------SSPQVAKEVMK----THDVVFA 63 (221)
Q Consensus 1 P~~~PiiGnl~~l~----~~-~~~~~~~~~~~~YG~-i~~l~~g~~~~vvv-------~~~~~ike~l~----~~~~~f~ 63 (221)
|+|||+|||++++. .. +++..+.+|.++||+ ||++++|+.++|++ ++....+.++. ++.+.+.
T Consensus 14 p~g~P~iG~~~~~~~~~~~~g~~~~~~~~~~~kyG~~vf~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 93 (473)
T 3dan_A 14 SYGIPFFQPIKDRLEYFYGTGGRDEYFRSRMQKYQSTVFRANMPPGPFVSSNPKVIVLLDAKSFPILFDVSKVEKKDLFT 93 (473)
T ss_dssp CCCSTTHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSEEEEECTTCTTTCSCCEEEEECSTTTGGGGGCTTTEECSSCTT
T ss_pred CCCCcchhhHHHHHHHHHhhcCchHHHHhHHHHhCCeEEEecCCCCCccccCCceEEeecccccceecCCcceecccccc
Confidence 56799999998852 34 678899999999999 99999986655443 33332223332 1222333
Q ss_pred CCCCCchhhhhhcCCCceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH----------------------HHHHH
Q 048376 64 SRPHFPPAQIISYNYRDIVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK----------------------SKIYS 121 (221)
Q Consensus 64 ~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~----------------------~~~~~ 121 (221)
++... ....+.......++..+|+.|+++|+++. +.|+++ ++.+.+.+++ +.+..
T Consensus 94 ~~~~~-~~~~~g~~~~~~~~~~~~~~h~~~R~~~~-~~f~~~-~~~~~~~i~~~~~~ll~~~~~~~~~~~~vdl~~~~~~ 170 (473)
T 3dan_A 94 GTYMP-STKLTGGYRVLSYLDPSEPRHAQLKNLLF-FMLKNS-SNRVIPQFETTYTELFEGLEAELAKNGKAAFNDVGEQ 170 (473)
T ss_dssp SSSCC-CGGGGTTSCCGGGCCTTSHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHSCEECHHHHHH
T ss_pred ccccC-CccccCCCcceeeeCCCcHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCcccHHHHHHH
Confidence 32211 12222211122334557999999999975 566653 4544332222 67889
Q ss_pred HHHHHHHHHHhCCCCCC
Q 048376 122 LMYGITSRAAFGNRSRD 138 (221)
Q Consensus 122 ~~~~vi~~~~fG~~~~~ 138 (221)
++.++|++++||.+++.
T Consensus 171 ~~~~~i~~~~~G~~~~~ 187 (473)
T 3dan_A 171 AAFRFLGRAYFNSNPEE 187 (473)
T ss_dssp HHHHHHHHHHHSCCGGG
T ss_pred HHHHHHHHHHcCCCCCc
Confidence 99999999999998765
No 71
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.50A {Sulfolobus solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A* 1io9_A* 1io8_A*
Probab=99.37 E-value=2.5e-12 Score=105.25 Aligned_cols=115 Identities=18% Similarity=0.237 Sum_probs=81.8
Q ss_pred ccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCC--Cchhh-----h--hhc-CCCceeeCCCC
Q 048376 18 PHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPH--FPPAQ-----I--ISY-NYRDIVFSPYG 87 (221)
Q Consensus 18 ~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~--~~~~~-----~--~~~-~~~~~~~~~~g 87 (221)
|+..+.++ ++||||+++ | +++||+++++|+++|.+. +.|++||. ..... . +.. .+.++++. +|
T Consensus 1 p~~~~~~l-r~~Gpv~~~--g--~~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~g 73 (368)
T 1io7_A 1 MYDWFSEM-RKKDPVYYD--G--NIWQVFSYRYTKEVLNNF-SKFSSDLTGYHERLEDLRNGKIRFDIPTRYTMLTS-DP 73 (368)
T ss_dssp CHHHHHHH-HHHCSEEEC--S--SCEEECSHHHHHHHHHCT-TTEECCCSSHHHHHHHHTTTCCCCSCGGGSSGGGC-CT
T ss_pred CCHHHHHH-HhcCCeEeE--C--CEEEEecHHHHHHHHcCc-ccccccccccccccccccccccccccccccccccC-CC
Confidence 45667777 699999987 5 689999999999999874 57999984 10011 1 110 11445444 69
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHhHHHHHH-----------------HHH-HHHHHHHHHHHHhCCCCCChhH
Q 048376 88 DSWKQLRKICVSELLSAKRVQSFQSIREK-----------------SKI-YSLMYGITSRAAFGNRSRDQEA 141 (221)
Q Consensus 88 ~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~-----------------~~~-~~~~~~vi~~~~fG~~~~~~~~ 141 (221)
+.|+++||++ .+.|+++.++.+.+.+++ ..+ ..++.++|+.+ ||.+++..+.
T Consensus 74 ~~h~~~R~~~-~~~f~~~~~~~~~~~i~~~~~~l~~~l~~g~~d~~~~~~~~~~~~vi~~~-~G~~~~~~~~ 143 (368)
T 1io7_A 74 PLHDELRSMS-ADIFSPQKLQTLETFIRETTRSLLDSIDPREDDIVKKLAVPLPIIVISKI-LGLPIEDKEK 143 (368)
T ss_dssp THHHHHHGGG-TTTTCHHHHHHHHHHHHHHHHHHHHTCCTTSEEHHHHTTTHHHHHHHHHH-HTCCGGGHHH
T ss_pred hHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHH-hCCCHHHHHH
Confidence 9999999996 478888877776654443 234 57899999999 9988764333
No 72
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A {Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Probab=99.36 E-value=9.7e-13 Score=109.49 Aligned_cols=176 Identities=11% Similarity=0.078 Sum_probs=110.9
Q ss_pred CCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchh----hhhh-cCCCceeeCCCChHH
Q 048376 16 SLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPA----QIIS-YNYRDIVFSPYGDSW 90 (221)
Q Consensus 16 ~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~----~~~~-~~~~~~~~~~~g~~W 90 (221)
.+|+.. ++.++||||+.+++|+.. ++|+++++|+++|.++.-.++.++..... .... ..+.+ ++..+|+.|
T Consensus 33 ~~P~~~--~~lr~~gpv~~~~~g~~~-~vv~~~~~v~~vL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~dg~~h 108 (416)
T 3p3o_A 33 NFSWDS--PEVAEAREKSWIARTPLA-LLVLRYAEADQLARDKRLISGFRGLVDMVGTPEGPVRDFMVDF-LQSLDGADH 108 (416)
T ss_dssp TCCTTS--HHHHHHHHHCSEEECSSS-EEECSHHHHHHHHHCTTEECSHHHHHHHHTCCSSHHHHHHHHS-GGGCCHHHH
T ss_pred cCCchH--HHHHHhCCccccccCCCc-eEEeCHHHHHHHHcCcccccCCccccccccccccchhhhhcCc-cccCCchHH
Confidence 356665 777889999999998888 99999999999998763222222100000 0110 00123 344579999
Q ss_pred HHHHHHHHHhhcCHHHHHHhHHHHHH------------------HHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHH
Q 048376 91 KQLRKICVSELLSAKRVQSFQSIREK------------------SKIYSLMYGITSRAAFGNRSRDQEAFASVRGEITKL 152 (221)
Q Consensus 91 k~~Rr~~~~~~~~~~~~~~~~~i~~~------------------~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~ 152 (221)
+++||++ .+.|+++.++.+.+.+++ +....++.+||+. +||...+..+.+......+..
T Consensus 109 ~~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~g~~d~~~~~~~~~~~~vi~~-l~G~~~~~~~~~~~~~~~~~~- 185 (416)
T 3p3o_A 109 RRLRGLA-THPFTPRRITAVQPFVRSTVEQLIDKLPQGDFDFVQHFPHPLPALVMCQ-LLGFPLEDYDTVGRLSIETNL- 185 (416)
T ss_dssp HHHHHTT-CGGGSHHHHHHHHHHHHHHHHHHHHTCCSSSEEHHHHTTTHHHHHHHHH-HHTCCGGGHHHHHHHHHTTCG-
T ss_pred HHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHh-
Confidence 9999997 578998888877665544 2234578899998 589875544333332222111
Q ss_pred cCCCccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 153 MSGFNIADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 153 ~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
.+.... +.....+..+....+.+++.+.|++++++ ...|+++.|++
T Consensus 186 --------~~~~~~----~~~~~~~~~~~~~~l~~~~~~~i~~rr~~----------~~~dll~~ll~ 231 (416)
T 3p3o_A 186 --------GLALSN----DQDILVKVEQGLGRMFDYLVAAIEKRKVE----------PGDDLTSDIVR 231 (416)
T ss_dssp --------GGTTCS----CHHHHHHHHHHHHHHHHHHHHHHHHHHHS----------CCSSHHHHHHH
T ss_pred --------hccccc----chhhHHHHHHHHHHHHHHHHHHHHHHHhC----------CCccHHHHHHH
Confidence 111100 12234556677888899999999988753 24788888764
No 73
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX, bioremediation, electron transport; HET: HEM; 1.49A {Rhodococcus} PDB: 2wiv_A*
Probab=99.31 E-value=5.4e-11 Score=98.24 Aligned_cols=173 Identities=15% Similarity=0.144 Sum_probs=111.1
Q ss_pred CccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCCCceeeCCCChHHHHHHHH
Q 048376 17 LPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNYRDIVFSPYGDSWKQLRKI 96 (221)
Q Consensus 17 ~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~ 96 (221)
+|+..+.++.+ +|||+.+..| .++|++++.+++++.+. .|+.+|..+........+.++ +..+|+.|+++||+
T Consensus 21 dp~~~~~~lr~-~~pv~~~~~g---~~~v~~~~~v~~~l~d~--~fs~~~~~~~~~~~~~~~~~l-~~~dg~~h~~~R~~ 93 (394)
T 2wiy_A 21 NPYPWYRRLQQ-DHPVHKLEDG---TYLVSRYADVSHFAKLP--IMSVEPGWADAGPWAVASDTA-LGSDPPHHTVLRRQ 93 (394)
T ss_dssp CCHHHHHHHHH-HCSEEECTTS---CEEECCHHHHHHHTTST--TEECHHHHHTCGGGGGGGGSG-GGCCTTHHHHHHHH
T ss_pred CccHHHHHHHh-cCCeEEecCC---eEEEcCHHHHHHHHcCC--Cccccccccccccchhccccc-ccCCchHHHHHHHH
Confidence 67778877755 5899987665 79999999999999643 576664211111111112343 45579999999999
Q ss_pred HHHhhcCHHHHHHhHHHHHH------------------HHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHcCCCcc
Q 048376 97 CVSELLSAKRVQSFQSIREK------------------SKIYSLMYGITSRAAFGNRSRDQEAFASVRGEITKLMSGFNI 158 (221)
Q Consensus 97 ~~~~~~~~~~~~~~~~i~~~------------------~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (221)
+ .+.|+++.++.+.+.+++ ..+..++.++|+..+||...++.+.+...+...+. .
T Consensus 94 ~-~~~fs~~~~~~~~~~i~~~~~~l~~~~~~~~~~d~~~~~~~~~~~vi~~~~~G~~~~~~~~~~~~~~~~~~--~---- 166 (394)
T 2wiy_A 94 T-NKWFTPKLVDGWVRTTRELVGDLLDGVEAGQVIEARRDLAVVPTHVTMARVLQLPEDDADAVMEAMFEAML--M---- 166 (394)
T ss_dssp H-HTTCSHHHHHHHTHHHHHHHHHHHHTCCTTCCEEHHHHHTHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHG--G----
T ss_pred H-HhccCHHHHHHHHHHHHHHHHHHHHHHhccCCeeHHHHHHhhhHHHHHHHHcCCCHhHHHHHHHHHHHHHH--h----
Confidence 6 588998888877654443 56778899999999999877654454443322111 0
Q ss_pred ccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcHHHHhhc
Q 048376 159 ADMFPSVGLLQWLTGYKSQVEKLHQEADRIVKNIINEHKKRKATLKICKIGDDEDLVDVLLK 220 (221)
Q Consensus 159 ~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~ld~ll~ 220 (221)
....|... ...+..+....+.+++.++|++++++ ...|+++.|++
T Consensus 167 ~~~~p~~~-------~~~~~~~~~~~l~~~~~~~i~~rr~~----------~~~dll~~Ll~ 211 (394)
T 2wiy_A 167 QSAEPADG-------DVDRAAVAFGYLSARVAEMLEDKRVN----------PGDGLADSLLD 211 (394)
T ss_dssp GSSSCCTT-------HHHHHHHHHHHHHHHHHHHHHHHHHS----------CCSSHHHHHHH
T ss_pred ccCCccch-------HHHHHHHHHHHHHHHHHHHHHHhhcC----------CCCcHHHHHHH
Confidence 01112211 12344456677788888888887642 23578888763
No 74
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus} PDB: 2rfc_A*
Probab=99.26 E-value=2.8e-11 Score=98.13 Aligned_cols=110 Identities=18% Similarity=0.200 Sum_probs=79.6
Q ss_pred hhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCCCceeeCCCChHHHHHHHHHHHhhcCHHH
Q 048376 27 NKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNYRDIVFSPYGDSWKQLRKICVSELLSAKR 106 (221)
Q Consensus 27 ~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~ 106 (221)
++||||+++ | +++|+||++|+++|.++ +.|++||....... ++.++++. +|+.|+++||++ .+.|++..
T Consensus 2 r~~gpv~~~--g---~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~---~~~~l~~~-~g~~~~~~R~~~-~~~fs~~~ 70 (343)
T 2rfb_A 2 RLNDPVHYD--G---AWHVYKYSDVKHVLMND-KIFSSNPGNRYSNA---GGISFITM-DNPEHKEFRDIS-APYFLPSK 70 (343)
T ss_dssp -CCCCEEET--T---EEEECSHHHHHHHHHCT-TTEESSCSSCCC------CCGGGGC-CHHHHHHHHHHH-HHHHSHHH
T ss_pred CCcCCeeee--C---eEEEcCHHHHHHHHhCh-hhcccCCcCCCCCc---cccccccC-CchHHHHHHHHh-hhhcCHHH
Confidence 689999876 4 99999999999999876 47999984211111 24555544 799999999997 57788888
Q ss_pred HHHhHHHHHH---------------HHH-HHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 048376 107 VQSFQSIREK---------------SKI-YSLMYGITSRAAFGNRSRDQEAFASVRGE 148 (221)
Q Consensus 107 ~~~~~~i~~~---------------~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~~ 148 (221)
++.+.+.+++ ..+ ..+++++|+.+ ||.+.+..+.+......
T Consensus 71 l~~~~~~i~~~~~~l~~~l~~~d~~~~~~~~~~~~vi~~~-~G~~~~~~~~~~~~~~~ 127 (343)
T 2rfb_A 71 INDYKDFIEETSNDLIKNIDNKDIISEYAVRLPVNIISKI-LGIPDSDMPLFKLWSDY 127 (343)
T ss_dssp HGGGHHHHHHHHHHHHTTCTTSCHHHHTTTHHHHHHHHHH-HTCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccCHHHHHhhhhhHHHHHHH-cCCCHHHHHHHHHHHHH
Confidence 8877665554 233 68899999998 99887654455444433
No 75
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A {Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A* 4dnz_A*
Probab=98.82 E-value=3.3e-08 Score=82.01 Aligned_cols=109 Identities=14% Similarity=0.144 Sum_probs=71.2
Q ss_pred CCCccccc-cc--ccCCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhh---hhh
Q 048376 2 WKLPLIGN-LH--QLAGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQ---IIS 75 (221)
Q Consensus 2 ~~~PiiGn-l~--~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~---~~~ 75 (221)
.|+|.+|- .+ .+ ..+|+..+.++ +++|||+ |.+..++++|+++++|+++|.+ .+.|++++...... ...
T Consensus 18 ~~~P~~~~dp~~~~~-~~dP~~~~~~l-R~~gPV~--~~~~~~~~~vt~~~~v~~vl~d-~~~fs~~~~~~~~~~~~~~~ 92 (412)
T 4dnj_A 18 AGVPHLGIDPFALDY-FADPYPEQETL-REAGPVV--YLDKWNVYGVARYAEVYAVLND-PLTFCSSRGVGLSDFKKEKP 92 (412)
T ss_dssp TTSCEECCCTTSHHH-HHSCHHHHHHH-HHHCSSE--EETTTTEEEECSHHHHHHHHTC-TTTEESTTCSSSSCTTTSCC
T ss_pred CCCCccCCCCCCHHH-HhCcHHHHHHH-HhcCCEE--EECCCCEEEECCHHHHHHHHcC-CccccCCCcccccccccccc
Confidence 35677661 11 12 24677777776 5689996 6788889999999999999964 44665543221111 111
Q ss_pred cCCCceeeCCCChHHHHHHHHHHHhhcCHHHHHHhHHHHHH
Q 048376 76 YNYRDIVFSPYGDSWKQLRKICVSELLSAKRVQSFQSIREK 116 (221)
Q Consensus 76 ~~~~~~~~~~~g~~Wk~~Rr~~~~~~~~~~~~~~~~~i~~~ 116 (221)
....+.++..+|+.|+++||++ .+.|+++.++.+.+.+++
T Consensus 93 ~~~~~~~~~~Dg~~H~r~R~~~-~~~Fs~~~l~~~~~~i~~ 132 (412)
T 4dnj_A 93 WRPPSLILEADPPAHTRTRAVL-SKVLSPATMKRLRDGFAA 132 (412)
T ss_dssp SSCCCTTTTCCTTHHHHHHHHH-HHHTCHHHHHHHHHHHHH
T ss_pred ccCCCccccCChHHHHHHHhhc-ccccCHHHHHHhhHHHHH
Confidence 1122334455799999999996 578999888887665543
No 76
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent, mono-oxygenases, oxidoreductase; HET: HEM; 2.00A {Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Probab=98.39 E-value=1.3e-05 Score=66.50 Aligned_cols=96 Identities=14% Similarity=0.092 Sum_probs=62.1
Q ss_pred CccHHHHHHHhhcC-CceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCCCceeeCCCChHHHHHHH
Q 048376 17 LPHHRLRDLTNKYG-PLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNYRDIVFSPYGDSWKQLRK 95 (221)
Q Consensus 17 ~~~~~~~~~~~~YG-~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr 95 (221)
++|..+.++.++.+ +++..-.|+ .+.+|+++++|+++|.+ .+.|++++....... ......+.+..+|+.|+++||
T Consensus 38 ~~~~~~~~lr~~~~~~~~~~~~~g-g~W~vtr~~dv~~vl~d-~~~fs~~~~~~~~~~-~~~~~~~~~~~D~p~H~r~Rr 114 (417)
T 4dxy_A 38 GYHEAWKKVQHPGIPDLIWTPFTG-GHWIATNGDTVKEVYSD-PTRFSSEVIFLPKEA-GEKAQMVPTKMDPPEHTPYRK 114 (417)
T ss_dssp CHHHHHHHHSCTTCCSEEEESSTT-SEEEECSHHHHHHHHTC-TTTEESSCCSSSTTS-SCSSCTTTTTCCTTTHHHHHH
T ss_pred ChHHHHHHHHhhCCCCEEecCCCC-CEEEECCHHHHHHHHcC-chhccCCCccccccc-ccccccCcccCCcHHHHHHHH
Confidence 45667777765544 344332332 57899999999999964 457887754321111 111223334447999999999
Q ss_pred HHHHhhcCHHHHHHhHHHHHH
Q 048376 96 ICVSELLSAKRVQSFQSIREK 116 (221)
Q Consensus 96 ~~~~~~~~~~~~~~~~~i~~~ 116 (221)
++ .+.|+++.++.+.+.+++
T Consensus 115 ll-~~~Fs~~~l~~~~~~i~~ 134 (417)
T 4dxy_A 115 AL-DKGLNLAKIRKVEDKVRE 134 (417)
T ss_dssp HH-HHHHCHHHHHTTHHHHHH
T ss_pred Hh-hhhcCHHHHHHHHHHHHH
Confidence 96 578999988888765554
No 77
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=96.47 E-value=0.00088 Score=54.83 Aligned_cols=58 Identities=14% Similarity=0.209 Sum_probs=44.9
Q ss_pred CCccccccccc----CCCCccHHHHHHHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCCCccCCCCC
Q 048376 3 KLPLIGNLHQL----AGSLPHHRLRDLTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHDVVFASRPH 67 (221)
Q Consensus 3 ~~PiiGnl~~l----~~~~~~~~~~~~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~~~f~~Rp~ 67 (221)
++|++|+..++ ...+++..+.++.++ ||+... .++++|++++.++++|.+ ..|+.++.
T Consensus 42 ~~P~~G~~~~~~~~~~~~dp~~~~~~lr~~--pV~~~~---~~~~vv~~~~~v~~vl~d--~~f~~~~~ 103 (381)
T 2yjn_B 42 GYGSNGDPYPMLLCGHDDDPQRRYRSMRES--GVRRSR---TETWVVADHATARQVLDD--PAFTRATG 103 (381)
T ss_dssp HHHHHTCHHHHHHHTCCSCCHHHHHHHHHH--CEEECS---SSCEEECSHHHHHHHHHC--SSEESSCC
T ss_pred cccccCCchhhcCchhccCchHHHHHHHhC--CceeCC---CCEEEEcCHHHHHHHHcC--CCcCCCcc
Confidence 47999987552 145788888988866 998644 569999999999999986 36887764
No 78
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.94 E-value=0.26 Score=31.64 Aligned_cols=59 Identities=17% Similarity=0.171 Sum_probs=46.3
Q ss_pred cccccccCCCCc--cHHHHHHHhhcC-CceEEEcCCcCEEEeccHHHHHHHHH-hCCCccCCCCC
Q 048376 7 IGNLHQLAGSLP--HHRLRDLTNKYG-PLMLLQLGQVPAIIVSSPQVAKEVMK-THDVVFASRPH 67 (221)
Q Consensus 7 iGnl~~l~~~~~--~~~~~~~~~~YG-~i~~l~~g~~~~vvv~~~~~ike~l~-~~~~~f~~Rp~ 67 (221)
+|||..= .+.. ...+.++..+|| +|..+ .|++-+|.-.+.+.|+.++. -++..+-+||.
T Consensus 14 V~NL~~~-~~~~~lk~~L~~lF~~yGG~Vl~V-tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 14 VYNLPAN-KDGKSVSNRLRRLSDNCGGKVLSI-TGCSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp EESCCTT-SCHHHHHHHHHHHHHTTTCCEEEC-CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred EeCCCCc-CCHHHHHHHHHHHHHHcCCeeEEE-ecCEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 7888663 2221 245889999995 99888 67999999999999999985 47778889985
No 79
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=90.94 E-value=0.9 Score=27.57 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=41.7
Q ss_pred ccccccccCCCC----ccHHHHHHHhhcCCceEEEcC-------CcCEEEeccHHHHHHHHHh-CCCccCCC
Q 048376 6 LIGNLHQLAGSL----PHHRLRDLTNKYGPLMLLQLG-------QVPAIIVSSPQVAKEVMKT-HDVVFASR 65 (221)
Q Consensus 6 iiGnl~~l~~~~----~~~~~~~~~~~YG~i~~l~~g-------~~~~vvv~~~~~ike~l~~-~~~~f~~R 65 (221)
++|||..- ... ....+.+...+||+|..+++- +.-.|-..+++.++.++.. ++..+.+|
T Consensus 5 ~V~nLp~~-~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 5 VVDNVPQV-GPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp EEESCCCC-CTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred EEeCCCCC-cHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 57887643 221 236778888999999998875 2335667799999999874 55666666
No 80
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.66 E-value=1.2 Score=28.72 Aligned_cols=59 Identities=12% Similarity=0.163 Sum_probs=42.9
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC--------CcCEEEeccHHHHHHHHHhCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG--------QVPAIIVSSPQVAKEVMKTHDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g--------~~~~vvv~~~~~ike~l~~~~~~f~~Rp~ 67 (221)
++|||..- -....+.++..+||+|..+.+- +.-.|...+++.++.++..++..+.+|+.
T Consensus 15 fV~~Lp~~---~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l 81 (103)
T 1s79_A 15 YIKGFPTD---ATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDL 81 (103)
T ss_dssp EEECCCTT---CCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTC
T ss_pred EEECCCCC---CCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEE
Confidence 56766543 2246788888999999988874 23456778999999999866666777764
No 81
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=87.84 E-value=0.95 Score=26.84 Aligned_cols=59 Identities=15% Similarity=0.254 Sum_probs=42.0
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHhCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKTHDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~~~~~f~~Rp~ 67 (221)
++|||..- -....+.++.++||+|..+.+-. .-.|...+++.++.++..++..+.+|+.
T Consensus 3 ~v~nLp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l 70 (75)
T 1iqt_A 3 FVGGLSPD---TPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKC 70 (75)
T ss_dssp EESCCCSS---CCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEE
Confidence 46666543 22467888889999998888732 3356678999999999876666666653
No 82
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=87.59 E-value=1.7 Score=25.68 Aligned_cols=59 Identities=12% Similarity=0.131 Sum_probs=41.7
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHhCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKTHDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~~~~~f~~Rp~ 67 (221)
++|||..- -....+.++-.+||+|..+.+-. .-.|...+++.++.++.-++..+.+|+.
T Consensus 3 ~v~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l 70 (75)
T 2mss_A 3 FVGGLSVN---TTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMV 70 (75)
T ss_dssp EEECCCSS---CCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCC
T ss_pred EEecCCCC---CCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEE
Confidence 46666543 22467888999999998888743 2346667999999998766666666653
No 83
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=85.08 E-value=1.9 Score=27.41 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=40.8
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCCc---------CEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQV---------PAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~---------~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
+||||..- -....+.++-++||+|..+++-.. -.|-..+++.|+.++.. ++..+.+|+
T Consensus 23 fV~nLp~~---~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~ 90 (99)
T 4fxv_A 23 IVNYLPQN---MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKT 90 (99)
T ss_dssp EEESCCTT---CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 56777543 224678889999999998876321 25777899999998864 555666665
No 84
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=85.07 E-value=1.4 Score=28.34 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=42.7
Q ss_pred cccccccccCCCC----ccHHHHHHHhhcCCceEEEcC-------CcCEEEeccHHHHHHHHHh-CCCccCCC
Q 048376 5 PLIGNLHQLAGSL----PHHRLRDLTNKYGPLMLLQLG-------QVPAIIVSSPQVAKEVMKT-HDVVFASR 65 (221)
Q Consensus 5 PiiGnl~~l~~~~----~~~~~~~~~~~YG~i~~l~~g-------~~~~vvv~~~~~ike~l~~-~~~~f~~R 65 (221)
-++|||..- ... ....+.++..+||+|..+++- +.-+|...+++.++.++.. ++..+.+|
T Consensus 18 l~V~nLp~~-~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 18 IVVDNVPQV-GPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp EEEESCCCC-CTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred EEEeCCCcc-hhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 357887753 221 236688888999999998875 2345667799999888874 66666676
No 85
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=84.73 E-value=4.5 Score=25.68 Aligned_cols=59 Identities=20% Similarity=0.281 Sum_probs=43.3
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCCc----------CEEEeccHHHHHHHHHh--CCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQV----------PAIIVSSPQVAKEVMKT--HDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~----------~~vvv~~~~~ike~l~~--~~~~f~~Rp~ 67 (221)
+||||..- -....+.++..+||+|..+.+-.. -+|-..+.+.++.++.. ++..+.+|+.
T Consensus 19 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 19 LVRNIPFQ---ANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp EEESCCTT---CCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred EEeCCCCc---CCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 56776543 224678889999999999988543 25666799999999875 5677777764
No 86
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.28 E-value=4.9 Score=25.42 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=43.4
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
+||||..- -....+.++..+||+|..+++-. .-+|...+++.++.++.. ++..+.+|+.
T Consensus 19 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 19 YVGGLDEK---VSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp EEECCCTT---CCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 46776543 22467889999999999988754 235777899999999975 6666777764
No 87
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=83.36 E-value=4.6 Score=26.13 Aligned_cols=59 Identities=17% Similarity=0.192 Sum_probs=42.8
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC---CcCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG---QVPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g---~~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
++|||..- -....+.++..+||+|..+.+- +.-+|...+++.++.++.. ++..+.+|+.
T Consensus 14 ~V~nLp~~---~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 76 (111)
T 1whx_A 14 LAKNLPAG---TLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPL 76 (111)
T ss_dssp EEESCCTT---CCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Confidence 46766542 2346788899999999988873 3456667799999888863 5667788875
No 88
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.61 E-value=2.1 Score=26.90 Aligned_cols=56 Identities=11% Similarity=0.158 Sum_probs=40.2
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC---CcCEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG---QVPAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g---~~~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
++||+ .. ....+.++..+||+|..+.++ +.-+|...+++.+..++.. ++..+.+|+
T Consensus 19 ~V~n~-~~----t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 78 (97)
T 1x5p_A 19 YVYGE-DM----TPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQ 78 (97)
T ss_dssp EEECS-SC----CHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred EEcCC-CC----CHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 57773 32 246788999999999999886 3345666799999999864 555566655
No 89
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.52 E-value=4.3 Score=25.39 Aligned_cols=59 Identities=14% Similarity=0.177 Sum_probs=43.1
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHhCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKTHDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~~~~~f~~Rp~ 67 (221)
+||||..- -....+.++..+||+|..+.+-. .-+|-..+.+.++.++.-++..+.+|+.
T Consensus 14 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l 81 (99)
T 2dgs_A 14 FVGGIPHN---CGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKV 81 (99)
T ss_dssp EEESCCSS---CCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEE
Confidence 56776543 22467888999999999888732 2356678999999999767777777764
No 90
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=81.95 E-value=4.4 Score=25.29 Aligned_cols=59 Identities=19% Similarity=0.320 Sum_probs=42.8
Q ss_pred ccccccc-cCCCCccHHHHHHHhhcCCceEEEcC-CcCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 6 LIGNLHQ-LAGSLPHHRLRDLTNKYGPLMLLQLG-QVPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~-l~~~~~~~~~~~~~~~YG~i~~l~~g-~~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
++|||.. - -....+.++..+||+|..+.+. +.-+|...+++.+..++.. ++..+.+|+.
T Consensus 14 ~V~nlp~~~---~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 75 (96)
T 2kvi_A 14 FIGNLPLKN---VSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGKKL 75 (96)
T ss_dssp EEESSTTSC---CCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTTTB
T ss_pred EEeCCCccc---CCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 5777764 2 2246788899999999988873 3445666799999999874 6666777764
No 91
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=81.84 E-value=5.6 Score=26.14 Aligned_cols=59 Identities=14% Similarity=0.251 Sum_probs=43.0
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC---------CcCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG---------QVPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g---------~~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
+||||..- -....+.++..+||+|..+.+- +.-+|...+++.|+.++.. ++..+.+|+.
T Consensus 26 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 94 (126)
T 3ex7_B 26 FVTGVHEE---ATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 94 (126)
T ss_dssp EEESCCTT---CCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 46776543 2246788889999999999873 2336777899999999863 6667777764
No 92
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=81.17 E-value=4.5 Score=24.37 Aligned_cols=58 Identities=12% Similarity=0.182 Sum_probs=40.3
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
++|||..- -....+.++..+||+|..+.+-. .-.|...+++.++.++.. ++..+.+|+
T Consensus 11 ~V~nl~~~---~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 78 (85)
T 3mdf_A 11 YVGGLAEE---VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 78 (85)
T ss_dssp EEECCCTT---CCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEECCCCC---CCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 56776542 22467888999999999988732 236677799999998853 555555554
No 93
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=81.00 E-value=6.4 Score=25.58 Aligned_cols=58 Identities=12% Similarity=0.176 Sum_probs=42.7
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC--CcCEEEeccHHHHHHHHH-hCCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG--QVPAIIVSSPQVAKEVMK-THDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g--~~~~vvv~~~~~ike~l~-~~~~~f~~Rp 66 (221)
++|||..- . ....+.++.++||+|..+.+- +.-+|...+++.++.++. -++..+.+|+
T Consensus 20 ~V~nLp~~-~--t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 20 VVSGLPPS-G--SWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp EEEECCSS-C--CTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred EEeCCCCC-C--CHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 57887653 1 235688899999999888874 345677789999998886 3566777776
No 94
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=80.33 E-value=1.8 Score=26.46 Aligned_cols=58 Identities=16% Similarity=0.279 Sum_probs=40.0
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHhCCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKTHDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~~~~~f~~Rp 66 (221)
++|||..- -....+.++..+||+|..+.+-. .-.|...+++.++.++..++..+.+|+
T Consensus 15 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~ 81 (87)
T 3s7r_A 15 FVGGLSWD---TSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRV 81 (87)
T ss_dssp EEECCCTT---CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEE
T ss_pred EEeCCCCC---CCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEE
Confidence 46776542 23467888999999998887631 235667799999999976554455543
No 95
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=80.16 E-value=6.2 Score=24.58 Aligned_cols=58 Identities=24% Similarity=0.319 Sum_probs=41.0
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHH-hCCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMK-THDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~-~~~~~f~~Rp 66 (221)
+||||..- -....+.++..+||+|..+.+-. .-+|...+++.++.++. -++..+.+|+
T Consensus 12 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (99)
T 1whw_A 12 FVRNLSYT---SSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRM 79 (99)
T ss_dssp EEECCCTT---CCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCE
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 56776543 22467888999999999998843 23567779999999984 3555666665
No 96
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=80.06 E-value=3.2 Score=25.33 Aligned_cols=59 Identities=14% Similarity=0.163 Sum_probs=41.2
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHhCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKTHDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~~~~~f~~Rp~ 67 (221)
++|||..- -....+.++..+||+|..+++-. .-.|...+++.++.++.-++..+.+|+.
T Consensus 10 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l 77 (89)
T 3ucg_A 10 YVGNVDYG---ATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQI 77 (89)
T ss_dssp EEESCCTT---CCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEEC
T ss_pred EEeCCCCC---CCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEE
Confidence 46666543 23467888999999998887642 2356777999999998656666666653
No 97
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=79.90 E-value=3.8 Score=26.70 Aligned_cols=60 Identities=13% Similarity=0.244 Sum_probs=42.9
Q ss_pred cccccccccCCCCccHHHHHHHhhcCCceEEEcCC-------cCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 5 PLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ-------VPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 5 PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~-------~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
-+||||..- -....+.++..+||+|..+++-. .-+|-..+++.++.++.. ++..+.+|+.
T Consensus 8 lfV~nLp~~---~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i 75 (115)
T 4f25_A 8 IFIKNLDKS---IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 75 (115)
T ss_dssp EEEESCCTT---CCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred EEECCCCCC---CCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 357777543 22467889999999998887632 236778899999999864 5666677653
No 98
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=79.71 E-value=4.1 Score=24.43 Aligned_cols=58 Identities=16% Similarity=0.246 Sum_probs=40.5
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
++|||..- -....+.++..+||+|..+.+-. .-.|...+++.++.++.. ++..+.+|+
T Consensus 5 ~V~nlp~~---~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 72 (83)
T 3md1_A 5 FVGDLNVN---VDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 72 (83)
T ss_dssp EEECCCTT---CCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 46666542 22467888889999998887642 236777899999999874 555666655
No 99
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=79.57 E-value=4 Score=25.66 Aligned_cols=59 Identities=19% Similarity=0.276 Sum_probs=41.7
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC----CcCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG----QVPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g----~~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
++|||..- -....+.++..+||+|..+.+- +.-+|-..+++.+..++.. ++..+.+|+.
T Consensus 4 ~V~nLp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 67 (101)
T 2hvz_A 4 YVGNLGTG---AGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRV 67 (101)
T ss_dssp EEECCCSS---CSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEE
Confidence 46776542 2246788899999999888873 2345666799999998873 5556777764
No 100
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=79.03 E-value=5.8 Score=25.11 Aligned_cols=59 Identities=14% Similarity=0.251 Sum_probs=41.0
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC---------CcCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG---------QVPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g---------~~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
+||||..- -....+.++..+||+|..+.+. +.-+|-..+.+.+..++.. ++..+.+|+.
T Consensus 27 ~V~nlp~~---~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 95 (106)
T 1p27_B 27 FVTGVHEE---ATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 95 (106)
T ss_dssp EEECCCTT---CCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred EEeCCCCC---CCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 46766542 2246688899999999888873 2235667899999998863 5556666653
No 101
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=78.96 E-value=5.2 Score=24.21 Aligned_cols=58 Identities=14% Similarity=0.321 Sum_probs=40.7
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC----------CcCEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG----------QVPAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g----------~~~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
++|||..- -....+.++..+||+|..+.+- +.-.|...+++.++.++.. ++..+.+|+
T Consensus 8 ~V~nlp~~---~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (88)
T 4a8x_A 8 HIGRLTRN---VTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQE 76 (88)
T ss_dssp EEECCCTT---CCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCCC---CCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeE
Confidence 56776543 2246788888999999888872 2335666799999999874 666666665
No 102
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=78.69 E-value=6.6 Score=25.57 Aligned_cols=59 Identities=22% Similarity=0.299 Sum_probs=42.5
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC--------cCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ--------VPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~--------~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
+||||..- -....+.++.++||+|..+.+-. .-+|...+.+.|+.++.. ++..+.+|+.
T Consensus 11 ~V~nLp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 78 (116)
T 2fy1_A 11 FIGGLNRE---TNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAI 78 (116)
T ss_dssp EEECCTTT---CCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 57777543 22467888999999998887743 335677899999999864 5666777764
No 103
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=78.56 E-value=7.9 Score=24.90 Aligned_cols=59 Identities=19% Similarity=0.264 Sum_probs=42.3
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEc---C---CcCEEEeccHHHHHHHHH-hCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQL---G---QVPAIIVSSPQVAKEVMK-THDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~---g---~~~~vvv~~~~~ike~l~-~~~~~f~~Rp~ 67 (221)
+||||..- -....+.++..+||+|..+.+ | +.-+|-..+++.|..++. -++..+.+|+.
T Consensus 12 ~V~nlp~~---~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 77 (115)
T 3lqv_A 12 YIRNLPYK---ITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYL 77 (115)
T ss_dssp EEESCCTT---CCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 57776542 224668889999999998887 2 244677779999988886 46666667664
No 104
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=78.33 E-value=4 Score=27.02 Aligned_cols=57 Identities=11% Similarity=0.144 Sum_probs=40.8
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC---CcCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG---QVPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g---~~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
+|||+ .. ....+.++..+||+|..+.++ +.-+|...+.+.+..++.. ++..+.+|+.
T Consensus 43 fVgnl-~~----te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l 103 (121)
T 2bz2_A 43 YVYGE-DM----TPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQL 103 (121)
T ss_dssp EEECS-SC----CHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBC
T ss_pred EEcCC-CC----CHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 57773 22 246788999999999888876 3445666799999888854 5666777664
No 105
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=78.14 E-value=5.5 Score=24.06 Aligned_cols=58 Identities=9% Similarity=0.122 Sum_probs=40.0
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
++|||..- -....+.++.++||+|..+.+-. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 10 ~v~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 77 (87)
T 3bs9_A 10 FVGDLSPE---ITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 77 (87)
T ss_dssp EEESCCTT---CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 46776542 22467888899999998887743 235667799999999874 555555554
No 106
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.13 E-value=5.5 Score=24.94 Aligned_cols=58 Identities=12% Similarity=0.149 Sum_probs=40.6
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC--------cCEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ--------VPAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~--------~~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
+||||..- -....+.++..+||+|..+++-. .-+|-..+++.++.++.. ++..+.+|+
T Consensus 21 ~v~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 87 (100)
T 2do4_A 21 FISGLPFS---CTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENI 87 (100)
T ss_dssp EEESCCTT---CCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred EEeCCCCC---CCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 46666542 22466888999999998888742 346777899999999854 555566655
No 107
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.85 E-value=3.4 Score=25.87 Aligned_cols=58 Identities=16% Similarity=0.171 Sum_probs=39.5
Q ss_pred ccccccccCCCCccHHHH----HHHhhcCCceEEEcC------CcCEEEeccHHHHHHHHH-hCCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLR----DLTNKYGPLMLLQLG------QVPAIIVSSPQVAKEVMK-THDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~----~~~~~YG~i~~l~~g------~~~~vvv~~~~~ike~l~-~~~~~f~~Rp 66 (221)
++|||..- .. ...+. ++..+||+|..+++- +.-+|-..+++.++.++. -++..+.+|+
T Consensus 13 ~V~nL~~~-~~--~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 13 QVSNIDYR-LS--RKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp EEESCCTT-SC--HHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred EEECCCCC-CC--HHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 57777643 12 23444 888999999988874 234566779999998886 4555566665
No 108
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.64 E-value=5.2 Score=25.22 Aligned_cols=59 Identities=14% Similarity=0.219 Sum_probs=41.3
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC-------cCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ-------VPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~-------~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
+||||..- -....+.++..+||+|..+++-. .-+|...+.+.++.++.. ++..+.+|+.
T Consensus 19 ~V~nlp~~---~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cq3_A 19 HVSNIPFR---FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 85 (103)
T ss_dssp EEESCCTT---CCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 46776542 22466888999999998887732 335666799999999864 5556666653
No 109
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.51 E-value=4.5 Score=24.39 Aligned_cols=58 Identities=17% Similarity=0.315 Sum_probs=40.1
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC---CcCEEEeccHHHHHHHHHh--CCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG---QVPAIIVSSPQVAKEVMKT--HDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g---~~~~vvv~~~~~ike~l~~--~~~~f~~Rp 66 (221)
++|||..- -....+.++..+||+|..+.+- +.-.|-..+++.+..++.. ++..+.+|+
T Consensus 16 ~V~~l~~~---~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 16 YVGGLGDT---ITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp EEECCTTT---SCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred EEcCCCCC---CCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 46666542 2246788899999999888764 2345666799999999974 444555554
No 110
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=77.50 E-value=6.7 Score=24.01 Aligned_cols=59 Identities=19% Similarity=0.302 Sum_probs=41.2
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC-------CcCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG-------QVPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g-------~~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
+||||..- -....+.++.++||+|..+.+- +.-+|-..+.+.++.++.. ++..+.+|+.
T Consensus 12 ~V~nlp~~---~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 78 (92)
T 2dgv_A 12 FVRNLPFD---FTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREI 78 (92)
T ss_dssp EECSCCTT---CCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 46776542 2346788899999999888763 2335666799999988874 5566777764
No 111
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=77.40 E-value=5.1 Score=25.76 Aligned_cols=58 Identities=14% Similarity=0.189 Sum_probs=40.9
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHhCCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKTHDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~~~~~f~~Rp 66 (221)
+||||..- -....+.++..+||+|..+.+-. .-+|...+.+.++.++...+..+.+|+
T Consensus 29 fV~nLp~~---~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~ 95 (109)
T 2rs2_A 29 FIGGLSWQ---TTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKT 95 (109)
T ss_dssp EEESCCTT---CCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEE
T ss_pred EEeCCCCC---CCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEE
Confidence 46766532 22466888999999999888743 236777899999999976554555554
No 112
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.85 E-value=7.4 Score=24.21 Aligned_cols=58 Identities=7% Similarity=0.132 Sum_probs=41.2
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCce-EEEcCC---------cCEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLM-LLQLGQ---------VPAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~-~l~~g~---------~~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
++|||..- -....+.++..+||+|. .+++-. .-+|-..+++.++.++.. ++..+.+|+
T Consensus 13 ~V~nLp~~---~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 13 WMGDLEPY---MDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp EECSCCTT---CCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred EEeCCCCC---CCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 56777543 22467888999999988 877642 235667799999999873 556677776
No 113
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=76.67 E-value=9.6 Score=25.93 Aligned_cols=59 Identities=17% Similarity=0.230 Sum_probs=42.2
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC----CcCEEEeccHHHHHHHHH-hCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG----QVPAIIVSSPQVAKEVMK-THDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g----~~~~vvv~~~~~ike~l~-~~~~~f~~Rp~ 67 (221)
++|||..- -....+.++..+||+|..+.+. +.-+|-..+.+.+..++. -++..+.+|+.
T Consensus 77 ~V~nl~~~---~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 140 (150)
T 2i2y_A 77 YVGNLGNN---GNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRV 140 (150)
T ss_dssp EEESCCSC---CSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCC
T ss_pred EEeCCCCC---CCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 47777543 1236688889999999988874 344566679999999886 36666777764
No 114
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=76.64 E-value=5.1 Score=25.78 Aligned_cols=58 Identities=14% Similarity=0.326 Sum_probs=40.5
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC-CcCEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG-QVPAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g-~~~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
+||||..- -....+.++..+||+|..+.+- +.-+|...+.+.+..++.. ++..+.+|+
T Consensus 35 ~V~nLp~~---~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (108)
T 2jvo_A 35 FVRPFPLD---VQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFANQP 94 (108)
T ss_dssp EECSSCTT---CCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred EEECCCCC---CCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 46776542 2246788899999999888774 4455666799999988864 555566654
No 115
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=76.57 E-value=7.3 Score=26.74 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=42.4
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCCc---------CEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQV---------PAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~---------~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
+||||..- -....+.++..+||+|..+.+... -+|-..+.+.++.++.. ++..+.+|+.
T Consensus 74 ~v~nl~~~---~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 142 (158)
T 2kn4_A 74 KVDNLTYR---TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 142 (158)
T ss_dssp EEESCCTT---CCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEE
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 46666442 224678888899999999987543 36777899999999975 5666777763
No 116
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=76.52 E-value=5.2 Score=25.86 Aligned_cols=59 Identities=12% Similarity=0.141 Sum_probs=41.2
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCCc---------CEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQV---------PAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~---------~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
+||||..- -....+.++..+||+|..+++-.. -+|...+.+.++.++.. ++..+.+|+.
T Consensus 29 ~V~nLp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 97 (115)
T 2cpz_A 29 FIYHLPQE---FGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 97 (115)
T ss_dssp EEESCCSS---CCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 56776543 224678889999999988876432 35667799999998854 5556666653
No 117
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.19 E-value=8.8 Score=23.99 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=41.6
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
+||||..- -....+.++..+||+|..+++-. .-+|...+++.|+.++.. ++..+.+|+.
T Consensus 16 ~v~nLp~~---~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 1x5s_A 16 FVGGLSFD---TNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 84 (102)
T ss_dssp EEESCCTT---CCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCC
T ss_pred EEECCCCC---CCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 56766542 22467888899999998888743 235666799999998843 5566777764
No 118
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=76.11 E-value=6 Score=25.44 Aligned_cols=64 Identities=13% Similarity=0.076 Sum_probs=41.0
Q ss_pred CcccccccccC--CCCccHHHHHHHhhcCCceEEEcCC--------c--CEEEeccHHHHHHHHH-hCCCccCCCCC
Q 048376 4 LPLIGNLHQLA--GSLPHHRLRDLTNKYGPLMLLQLGQ--------V--PAIIVSSPQVAKEVMK-THDVVFASRPH 67 (221)
Q Consensus 4 ~PiiGnl~~l~--~~~~~~~~~~~~~~YG~i~~l~~g~--------~--~~vvv~~~~~ike~l~-~~~~~f~~Rp~ 67 (221)
.-+|+|+..-. .......+.+...+||+|..+++-. + -.|.-.+++.|..++. =++..|.+|+.
T Consensus 10 ~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 10 VVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp EEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred EEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 34577776310 1233467777888999999887632 1 2455568888877775 36777888874
No 119
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=75.93 E-value=5.3 Score=26.05 Aligned_cols=58 Identities=16% Similarity=0.234 Sum_probs=41.2
Q ss_pred ccccccccCCCCccHHHHHHHhhcC-CceEEEcC-----CcCEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYG-PLMLLQLG-----QVPAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG-~i~~l~~g-----~~~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
++|||..- -....+.++.++|| .|..+.+. +.-+|...+.+.++.++.+ ++..+.+|+
T Consensus 32 ~VgnLp~~---~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~ 96 (111)
T 2jvr_A 32 TMKNLPEG---CSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSV 96 (111)
T ss_dssp EEECSSCC---CCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred EEECCCCC---CCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 46776542 22467889999999 78888773 3456777899999999864 555566664
No 120
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=75.73 E-value=4.7 Score=23.69 Aligned_cols=58 Identities=14% Similarity=0.189 Sum_probs=38.8
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHhCCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKTHDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~~~~~f~~Rp 66 (221)
++|||..- -....+.+...+||+|..+.+-. .-.|-..+++.++.++......+.+|+
T Consensus 4 ~v~nlp~~---~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 70 (77)
T 1uaw_A 4 FIGGLSWQ---TTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKT 70 (77)
T ss_dssp EEESCCSS---CCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEE
Confidence 46777543 22366888899999988777632 224555688899888875545556665
No 121
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=75.68 E-value=7.6 Score=24.43 Aligned_cols=62 Identities=15% Similarity=0.174 Sum_probs=41.7
Q ss_pred ccccccccCCC---CccHHHHHHHhhcCCceEEEcC---------CcCEEEeccHHHHHHHHH-hCCCccCC-CCC
Q 048376 6 LIGNLHQLAGS---LPHHRLRDLTNKYGPLMLLQLG---------QVPAIIVSSPQVAKEVMK-THDVVFAS-RPH 67 (221)
Q Consensus 6 iiGnl~~l~~~---~~~~~~~~~~~~YG~i~~l~~g---------~~~~vvv~~~~~ike~l~-~~~~~f~~-Rp~ 67 (221)
++|||...+.. .....+.++..+||+|..+++. +.-+|...+++.++.++. -++..+.+ |+.
T Consensus 10 fV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 10 VVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp EEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred EEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 57777654211 1235677888899999999874 233577779999999885 35556665 653
No 122
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=75.60 E-value=5.7 Score=24.40 Aligned_cols=59 Identities=17% Similarity=0.237 Sum_probs=40.2
Q ss_pred ccccccccCCCCccHHHHHHHhhcC--CceEEEcCC---------cCEEEeccHHHHHHHHH-hCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYG--PLMLLQLGQ---------VPAIIVSSPQVAKEVMK-THDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG--~i~~l~~g~---------~~~vvv~~~~~ike~l~-~~~~~f~~Rp~ 67 (221)
++|||..- -....+.++..+|| +|..+++-. .-.|...+.+.++.++. -++..+.+|+.
T Consensus 5 ~V~nL~~~---~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i 75 (90)
T 3p5t_L 5 YIGNLTWW---TTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 75 (90)
T ss_dssp EEESCCTT---CCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCC
T ss_pred EEeCCCCC---CCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEE
Confidence 57777553 22467888999999 888777532 23666779999988884 45556777764
No 123
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.56 E-value=6.9 Score=24.83 Aligned_cols=59 Identities=12% Similarity=0.083 Sum_probs=42.7
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceE-EEcC--------CcCEEEeccHHHHHHHHHhCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLML-LQLG--------QVPAIIVSSPQVAKEVMKTHDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~-l~~g--------~~~~vvv~~~~~ike~l~~~~~~f~~Rp~ 67 (221)
++|||..- -....+.++.++||.|-. +.+- +.-+|...+++.++.++.+++..+.+|+.
T Consensus 19 ~V~nLp~~---~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i 86 (104)
T 1wg5_A 19 RLRGLPFG---CSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYI 86 (104)
T ss_dssp EEESCCTT---CCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEE
Confidence 46666543 224678889999998764 5542 23567778999999999888777888864
No 124
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.46 E-value=10 Score=23.31 Aligned_cols=59 Identities=22% Similarity=0.367 Sum_probs=42.7
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHH-hCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMK-THDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~-~~~~~f~~Rp~ 67 (221)
+||||..- -....+.++..+||+|..+.+-. .-+|...+++.++.++. -++..+.+|+.
T Consensus 9 ~v~nlp~~---~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 77 (95)
T 2dnz_A 9 YVGSLHFN---ITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 77 (95)
T ss_dssp EEESCCTT---CCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 57776542 22467888999999998887743 23566779999999987 46667777775
No 125
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=75.02 E-value=6.2 Score=24.89 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=41.5
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC-CcCEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG-QVPAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g-~~~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
+||||..- -....+.++..+||+|..+.+- +.-+|-..+++.++.++.. ++..+.+|+
T Consensus 15 ~V~nl~~~---~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (103)
T 2dgu_A 15 FVRNLANT---VTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGEN 74 (103)
T ss_dssp EEECCCTT---CCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccCCCE
Confidence 57777543 2246788899999999988874 3445666799999999874 555666665
No 126
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=74.81 E-value=6.8 Score=25.22 Aligned_cols=59 Identities=8% Similarity=0.135 Sum_probs=41.2
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
+||||..- -....+.++..+||+|..+++-. .-+|...+.+.++.++.. ++..+.+|+.
T Consensus 19 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 19 FVGDLSPE---ITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp EEESCCTT---CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 46766542 22467888999999998887743 235777899999999864 5556666653
No 127
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.70 E-value=6.4 Score=24.78 Aligned_cols=59 Identities=15% Similarity=0.167 Sum_probs=42.5
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHH-hCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMK-THDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~-~~~~~f~~Rp~ 67 (221)
+||||..- -....+.++..+||+|..+.+-. .-+|...+++.++.++. -++..+.+|+.
T Consensus 17 ~V~nLp~~---~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 17 KVDNLTYR---TSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp EEESCCTT---CCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 46776543 22467888999999999988742 34677788999988887 36666777764
No 128
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=74.44 E-value=8.9 Score=25.62 Aligned_cols=62 Identities=16% Similarity=0.245 Sum_probs=41.1
Q ss_pred ccccccccCCC-CccHHHHHHHhhcCCceEEEcC------CcCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 6 LIGNLHQLAGS-LPHHRLRDLTNKYGPLMLLQLG------QVPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~-~~~~~~~~~~~~YG~i~~l~~g------~~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
+||||..-... .....+.++-.+||+|..+.+. +.-+|...+.+.|..++.. ++..+.+|+.
T Consensus 33 fV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 33 LITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred EEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 57777643111 1112356788999999888773 2456777899999888853 5666777764
No 129
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=74.43 E-value=8.5 Score=24.06 Aligned_cols=58 Identities=19% Similarity=0.338 Sum_probs=39.7
Q ss_pred ccccccc-cCCCCccHHHHHHHhhcCCceEEEcC-CcCEEEeccHHHHHHHHH-hCCCccCCCC
Q 048376 6 LIGNLHQ-LAGSLPHHRLRDLTNKYGPLMLLQLG-QVPAIIVSSPQVAKEVMK-THDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~-l~~~~~~~~~~~~~~~YG~i~~l~~g-~~~~vvv~~~~~ike~l~-~~~~~f~~Rp 66 (221)
++|||.. - -....+.++..+||+|..+.+. +.-+|...+.+.++.++. -++..+.+|+
T Consensus 26 ~V~nLp~~~---~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (97)
T 2xnq_A 26 FIGNLPLKN---VSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEMNFGKK 86 (97)
T ss_dssp EEESCCSSC---CCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHHHTTSEETTEE
T ss_pred EEeCCCccc---CCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 4777763 2 2246788899999999988874 344566679999998886 3444444544
No 130
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.28 E-value=5.6 Score=25.05 Aligned_cols=59 Identities=20% Similarity=0.341 Sum_probs=41.6
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC-------CcCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG-------QVPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g-------~~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
+||||..- -....+.++..+||+|..+.+- +.-+|...+++.|+.++.. ++..+.+|+.
T Consensus 19 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2d9p_A 19 YVKNLDDG---IDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 85 (103)
T ss_dssp EEECCCTT---CCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 56776543 2246688888999999888764 2345677899999999873 5666777764
No 131
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=74.24 E-value=5.4 Score=25.32 Aligned_cols=58 Identities=21% Similarity=0.307 Sum_probs=39.8
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC--------cCEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ--------VPAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~--------~~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
+||||..- -....+.++..+||+|..+.+-. .-+|-..+++.++.++.. ++..+.+|+
T Consensus 33 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 99 (107)
T 3ulh_A 33 LVSNLDFG---VSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRP 99 (107)
T ss_dssp EEESCCTT---CCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 46666442 22466888899999998877641 336667799999999874 555565554
No 132
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=74.21 E-value=8.3 Score=24.55 Aligned_cols=58 Identities=9% Similarity=0.194 Sum_probs=40.8
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
++|||..- -....+.++..+||+|..+.+-. .-+|-..+++.+..++.. ++..+.+|+
T Consensus 30 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 97 (110)
T 1oo0_B 30 FVTSIHEE---AQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 97 (110)
T ss_dssp EEESCCTT---CCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 46766542 22466888999999999998842 336667899999998863 555565654
No 133
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=73.88 E-value=9.6 Score=23.87 Aligned_cols=58 Identities=9% Similarity=0.150 Sum_probs=40.9
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC----------cCEEEeccHHHHHHHHHhCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ----------VPAIIVSSPQVAKEVMKTHDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~----------~~~vvv~~~~~ike~l~~~~~~f~~Rp~ 67 (221)
++|||..- -....+.++..+|| |..+.+.. .-+|...+.+.++.++.-++..+.+|+.
T Consensus 23 ~V~nLp~~---~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l 90 (100)
T 2j76_E 23 FLGNLPYD---VTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRI 90 (100)
T ss_dssp EESCCSSC---CSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEE
Confidence 46777543 12356888889999 99998743 3357778999999999556666667653
No 134
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.48 E-value=3.4 Score=26.25 Aligned_cols=59 Identities=15% Similarity=0.264 Sum_probs=42.4
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHhCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKTHDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~~~~~f~~Rp~ 67 (221)
+||||..- -....+.++..+||+|..+.+-. .-+|...+++.++.++..++..+.+|+.
T Consensus 20 ~V~nlp~~---~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l 87 (105)
T 2dh8_A 20 FVGGLDWS---TTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNI 87 (105)
T ss_dssp CCBSCCTT---CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEE
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEE
Confidence 46666542 22467888999999998887643 2356778999999999877767777753
No 135
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.45 E-value=5.8 Score=24.98 Aligned_cols=58 Identities=12% Similarity=0.112 Sum_probs=40.6
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC-------cCEEEeccHHHHHHHHH-hCCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ-------VPAIIVSSPQVAKEVMK-THDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~-------~~~vvv~~~~~ike~l~-~~~~~f~~Rp 66 (221)
+||||..- -....+.++..+||+|..+.+-. .-+|...+++.++.++. -++..+.+|+
T Consensus 19 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cqi_A 19 YVGNLSRD---VTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKE 84 (103)
T ss_dssp EEESCCTT---CCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred EEeCCCcc---CCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCe
Confidence 56776542 22467888999999998887743 33566779999988886 4555566665
No 136
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.40 E-value=8.7 Score=23.43 Aligned_cols=59 Identities=14% Similarity=0.204 Sum_probs=41.9
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC-CcCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG-QVPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g-~~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
++|||..- -....+.++..+||+|..+++- +.-+|-..+++.++.++.. ++..+.+|+.
T Consensus 13 ~V~nlp~~---~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 73 (90)
T 2dnp_A 13 FVGNVSAA---CTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRI 73 (90)
T ss_dssp EEESCCTT---CCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred EEeCCCCC---CCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 57777553 2246788889999999988875 3445667799999988863 5556666653
No 137
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.34 E-value=6.9 Score=24.03 Aligned_cols=58 Identities=17% Similarity=0.351 Sum_probs=40.8
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC-cCEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ-VPAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~-~~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
+||||..- -....+.++..+||+|..+.+-. .-+|-..+++.+..++.. ++..+.+|+
T Consensus 14 ~V~nLp~~---~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 73 (92)
T 2dgt_A 14 HVGNISPT---CTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKR 73 (92)
T ss_dssp EEESCCSS---CCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEETTEE
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 57777543 23467889999999998888753 344556689999888853 555666665
No 138
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=73.19 E-value=11 Score=23.26 Aligned_cols=59 Identities=15% Similarity=0.340 Sum_probs=40.6
Q ss_pred cccccccccCCCCccHHHH----HHHhhcCCceEEEcC------CcCEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 5 PLIGNLHQLAGSLPHHRLR----DLTNKYGPLMLLQLG------QVPAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 5 PiiGnl~~l~~~~~~~~~~----~~~~~YG~i~~l~~g------~~~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
-++|||..- . ....+. ++..+||+|..+.+- +.-+|-..+++.+..++.. ++..+.+|+
T Consensus 11 l~V~nLp~~-~--~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 11 IYINNLNEK-I--KKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp EEEESCCTT-S--CHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCCC-C--CHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 357877553 1 123344 889999999988774 4456777899999999864 555565554
No 139
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=73.09 E-value=2.7 Score=27.24 Aligned_cols=59 Identities=14% Similarity=0.193 Sum_probs=41.6
Q ss_pred ccccccccCCCCccHHHH---HHHhhcCCceEEEcCC------------cCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLR---DLTNKYGPLMLLQLGQ------------VPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~---~~~~~YG~i~~l~~g~------------~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
++|||..- . ....+. ++..+||+|..+.+-. .-.|...+++.|+.++.. ++..+.+|+.
T Consensus 19 ~V~nLp~~-~--~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 19 FVVGLSQR-L--ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp EEEEECTT-T--CCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred EEECCCCC-C--CHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 57777653 1 234566 7889999998887642 335667799999999986 7767777753
No 140
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=73.00 E-value=11 Score=25.25 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=42.1
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
+||||..- -....+.++..+||+|..+.+-. .-+|...+.+.++.++.. ++..+.+|+.
T Consensus 51 ~V~nLp~~---~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 119 (135)
T 2lea_A 51 KVDNLTYR---TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 119 (135)
T ss_dssp EEECCCSS---CHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 46666442 22467888899999999998753 346778899999999964 5556666654
No 141
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.81 E-value=11 Score=23.34 Aligned_cols=59 Identities=12% Similarity=0.197 Sum_probs=38.2
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCc-eEEEcC---CcCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPL-MLLQLG---QVPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i-~~l~~g---~~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
+||||..- -....+.++..+||+| ..+-.+ +.-+|...+++.+..++.. ++..+.+|+.
T Consensus 23 ~V~nL~~~---~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (97)
T 2e5j_A 23 YVGNLPRD---ARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTL 86 (97)
T ss_dssp EEECCCTT---CCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCC
T ss_pred EEeCCCCc---CcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 46776542 2246788899999987 333322 3345666799999888854 5666666653
No 142
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.70 E-value=8 Score=24.66 Aligned_cols=59 Identities=12% Similarity=0.191 Sum_probs=41.2
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC---CcCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG---QVPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g---~~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
+||||..- -....+.++..+||+|..+.+- +.-+|-..+.+.+..++.. ++..+.+|+.
T Consensus 29 ~V~nl~~~---~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 91 (109)
T 1x4g_A 29 YCGGIASG---LTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVV 91 (109)
T ss_dssp EEECCSSC---CCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 46776542 2246788888999999888874 3445667799999888853 5556666653
No 143
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.70 E-value=3.9 Score=26.52 Aligned_cols=58 Identities=19% Similarity=0.193 Sum_probs=41.5
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHhCCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKTHDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~~~~~f~~Rp 66 (221)
+||||..- -....+.++..+||+|..+.+-. .-+|...+++.++.++..++..+.+|+
T Consensus 31 ~V~nLp~~---~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~ 97 (116)
T 1x4b_A 31 FIGGLSFE---TTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRV 97 (116)
T ss_dssp EEECCTTC---CCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEE
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEE
Confidence 46766542 22467888999999998887633 335666799999999977666666765
No 144
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.42 E-value=11 Score=23.70 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=41.4
Q ss_pred ccccccccCCCCccHHHHHHHhh-cCCceEEEcCC--------cCEEEeccHHHHHHHHHh-CCCc-cCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNK-YGPLMLLQLGQ--------VPAIIVSSPQVAKEVMKT-HDVV-FASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~-YG~i~~l~~g~--------~~~vvv~~~~~ike~l~~-~~~~-f~~Rp~ 67 (221)
++|||..- -....+.++..+ ||+|..+.+-. .-+|-..+++.++.++.. ++.. +.+|+.
T Consensus 13 ~V~nLp~~---~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 13 FVGDLTPD---VDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp EEECCCTT---CCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred EEeCCCCC---CCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 57777653 224667888888 99998887632 345677899999999873 4445 777774
No 145
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.23 E-value=9.7 Score=24.54 Aligned_cols=59 Identities=14% Similarity=0.178 Sum_probs=41.9
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCCc---------CEEEeccHHHHHHHHHhCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQV---------PAIIVSSPQVAKEVMKTHDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~---------~~vvv~~~~~ike~l~~~~~~f~~Rp~ 67 (221)
+||||..- -....+.++..+||+|..+++-.. -+|-..+.+.++.++......+.+|+.
T Consensus 21 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l 88 (116)
T 2cqd_A 21 FVGGLPYH---TTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKA 88 (116)
T ss_dssp EEECCCSS---CCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEEC
T ss_pred EEeCCCCC---CCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEE
Confidence 46766543 224678888999999998887542 356678999999999754446667654
No 146
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.95 E-value=7.9 Score=25.02 Aligned_cols=60 Identities=15% Similarity=0.136 Sum_probs=42.8
Q ss_pred cccccccccCCCCccHHHHHHHhhcCCceEEEcC---CcCEEEeccHHHHHHHHHh---CCCccCCCCC
Q 048376 5 PLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG---QVPAIIVSSPQVAKEVMKT---HDVVFASRPH 67 (221)
Q Consensus 5 PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g---~~~~vvv~~~~~ike~l~~---~~~~f~~Rp~ 67 (221)
-++|||..- -....+.++..+||.|..+++- +.-+|-..+.+.|..++.. ++..+.+|+.
T Consensus 19 LfV~nLp~~---vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l 84 (105)
T 1sjq_A 19 IHIRKLPID---VTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 84 (105)
T ss_dssp EEECSCCTT---SCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEEC
T ss_pred EEEeCCCCC---CCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 357777653 2246688999999999988874 3457777899999888863 2346778875
No 147
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.78 E-value=4.7 Score=25.36 Aligned_cols=59 Identities=12% Similarity=0.166 Sum_probs=40.8
Q ss_pred cccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 5 PLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 5 PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
-+||||..- -....+.++..+||+|..+++.. .-+|...+++.++.++.. ++..+.+|+
T Consensus 15 l~V~nLp~~---~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2cqb_A 15 LYVGGLAEE---VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 83 (102)
T ss_dssp EEEESCCSS---CCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEE
T ss_pred EEEeCCCCC---CCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 357777543 22467888999999999888732 234556699999998853 555666665
No 148
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=71.62 E-value=5.4 Score=26.16 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=41.2
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHhCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKTHDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~~~~~f~~Rp~ 67 (221)
+||||..- -....+.++..+||+|..+.+-. .-+|...+.+.++.++.-++..+.+|+.
T Consensus 40 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l 107 (124)
T 2jwn_A 40 YVGNVDYG---STAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTI 107 (124)
T ss_dssp EEEEECTT---CCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEEC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEE
Confidence 46666542 22467888999999998887632 3367778999999999545666666653
No 149
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=71.55 E-value=6.1 Score=24.69 Aligned_cols=59 Identities=17% Similarity=0.258 Sum_probs=40.9
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---cCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---VPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
+||||..- -....+.++..+||+|..+++.. .-+|...+++.++.++.. ++..+.+|+.
T Consensus 19 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l 81 (99)
T 2cpj_A 19 FVGNLPPD---ITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQL 81 (99)
T ss_dssp EEESCCTT---CCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCC
T ss_pred EEeCCCCC---CCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceE
Confidence 56776542 22467889999999998888753 334556688888888853 5556777764
No 150
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.25 E-value=14 Score=23.43 Aligned_cols=48 Identities=21% Similarity=0.341 Sum_probs=37.0
Q ss_pred cHHHHHHHhhcCCceEEEcCC----cCEEEeccHHHHHHHHHhCCCccCCCCC
Q 048376 19 HHRLRDLTNKYGPLMLLQLGQ----VPAIIVSSPQVAKEVMKTHDVVFASRPH 67 (221)
Q Consensus 19 ~~~~~~~~~~YG~i~~l~~g~----~~~vvv~~~~~ike~l~~~~~~f~~Rp~ 67 (221)
...+.++..+||+|..+++.+ .-+|...+++.+..++.. ...+.+||.
T Consensus 31 e~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l 82 (100)
T 2d9o_A 31 KDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQN-EVGLVDNPL 82 (100)
T ss_dssp HHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBC
T ss_pred HHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeE
Confidence 467889999999999888742 335677799999999876 455677774
No 151
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.07 E-value=4.6 Score=25.97 Aligned_cols=58 Identities=14% Similarity=0.245 Sum_probs=39.4
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC-------CcCEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG-------QVPAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g-------~~~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
++|||..- -....+.++.++||+|..+.+- +.-+|...+.+.++.++.. ++..+.+|+
T Consensus 33 ~V~nLp~~---~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 98 (109)
T 2err_A 33 HVSNIPFR---FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRK 98 (109)
T ss_dssp EEESCCTT---CCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEE
T ss_pred EEECCCCc---CCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 46666442 2246788899999999888773 2335666788888888863 555566655
No 152
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=71.05 E-value=8.1 Score=23.77 Aligned_cols=58 Identities=19% Similarity=0.342 Sum_probs=40.1
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC--------cCEEEeccHHHHHHHHH-hCCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ--------VPAIIVSSPQVAKEVMK-THDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~--------~~~vvv~~~~~ike~l~-~~~~~f~~Rp 66 (221)
++|||..- -....+.++..+||+|..+++-. .-+|...+++.++.++. -++..+.+|+
T Consensus 20 ~v~nlp~~---~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (95)
T 2ywk_A 20 FVGNLEAR---VREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRP 86 (95)
T ss_dssp EEECCCTT---CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEE
T ss_pred EEECCCCC---CCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCE
Confidence 46666542 22467888999999998888743 23666779999988886 3555565655
No 153
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.78 E-value=11 Score=23.53 Aligned_cols=58 Identities=19% Similarity=0.314 Sum_probs=39.8
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHH-hCCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMK-THDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~-~~~~~f~~Rp 66 (221)
++|||..- -....+.++..+||+|..+.+-. .-+|-..+.+.++.++. -++..+.+|+
T Consensus 12 ~V~nlp~~---~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (104)
T 1p1t_A 12 FVGNIPYE---ATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRA 79 (104)
T ss_dssp EEESCCTT---SCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSC
T ss_pred EEeCCCCc---CCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 56776542 22466888899999998887642 23566779999999986 3455555554
No 154
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.63 E-value=12 Score=23.70 Aligned_cols=59 Identities=17% Similarity=0.289 Sum_probs=41.0
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC------cCEEEeccHHHHHHHHH-hCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ------VPAIIVSSPQVAKEVMK-THDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~------~~~vvv~~~~~ike~l~-~~~~~f~~Rp~ 67 (221)
+||||..- -....+.++..+||+|..+++-. .-+|...+.+.++.++. -++..+.+|+.
T Consensus 26 ~V~nLp~~---~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 91 (109)
T 1x4a_A 26 YVGNLPPD---IRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRL 91 (109)
T ss_dssp EEESCCTT---CCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 46776542 22467889999999998877632 23677789999999884 35556666653
No 155
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=70.24 E-value=14 Score=23.20 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=38.6
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC--------cCEEEeccHHHHHHHHHh-CCCccCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ--------VPAIIVSSPQVAKEVMKT-HDVVFAS 64 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~--------~~~vvv~~~~~ike~l~~-~~~~f~~ 64 (221)
+||||..- -....+.++..+||+|..+.+-. .-+|...+++.++.++.. ++..+.+
T Consensus 19 ~v~nLp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 19 FVGMLNKQ---QSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp EEESCCTT---CCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 46776542 22467888999999998887742 335667799999988863 4444555
No 156
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=69.98 E-value=8.7 Score=24.01 Aligned_cols=58 Identities=17% Similarity=0.211 Sum_probs=38.9
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC---CcCEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG---QVPAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g---~~~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
++|||..- -....+.++..+||.|..+++. +.-+|...+.+.+..++.. ++..+.+|+
T Consensus 31 ~V~nlp~~---~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 92 (101)
T 2la4_A 31 YIGNIPHF---ATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRN 92 (101)
T ss_dssp EEESCCTT---CCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred EEcCCCcc---cCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 46776542 2246788899999999988874 2334556688888888853 454555554
No 157
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=69.77 E-value=8.9 Score=26.60 Aligned_cols=58 Identities=12% Similarity=0.293 Sum_probs=41.1
Q ss_pred ccccccccCCCCccHHHHHHHhhcC--CceEEEcCC---------cCEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYG--PLMLLQLGQ---------VPAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG--~i~~l~~g~---------~~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
+||||..- -....+.++..+|| +|..+++-. .-+|...+.+.+..++.. ++..+.+|+
T Consensus 59 fVgnLp~~---~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~ 128 (156)
T 3n9u_C 59 YVGSFSWW---TTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEK 128 (156)
T ss_dssp EEECCCTT---CCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEE
T ss_pred EEeCCCCC---CCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 56766543 22467888999999 898888631 246778899999999976 555555554
No 158
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=69.66 E-value=10 Score=25.99 Aligned_cols=59 Identities=19% Similarity=0.221 Sum_probs=42.5
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
+||||..- -....+.++..+||+|..+.+-. .-+|...+++.|+.++.. ++..+.+|+.
T Consensus 43 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 111 (156)
T 1h2v_Z 43 YVGNLSFY---TTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRII 111 (156)
T ss_dssp EEESCCTT---CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEEC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 56776542 22467889999999999888721 236777899999999974 6666777654
No 159
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.53 E-value=17 Score=22.32 Aligned_cols=59 Identities=17% Similarity=0.179 Sum_probs=40.5
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEE-cCCc-----CEEEeccHHHHHHHHH-hCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQ-LGQV-----PAIIVSSPQVAKEVMK-THDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~-~g~~-----~~vvv~~~~~ike~l~-~~~~~f~~Rp~ 67 (221)
++|||..- -....+.++..+||+|..+. +-.. -+|...+++.++.++. -++..+.+|+.
T Consensus 19 ~V~nlp~~---~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 84 (96)
T 2e44_A 19 QIRNIPPH---LQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTL 84 (96)
T ss_dssp EEEEECSS---SCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred EEEcCCCC---CCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 57777543 22467888999999998883 3221 4577789999988886 45556666653
No 160
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=69.32 E-value=12 Score=25.54 Aligned_cols=59 Identities=14% Similarity=0.224 Sum_probs=41.4
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCCc---------CEEEeccHHHHHHHHHhCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQV---------PAIIVSSPQVAKEVMKTHDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~---------~~vvv~~~~~ike~l~~~~~~f~~Rp~ 67 (221)
++|||..- -....+.++..+||+|..+.+-.. -.|-..+++.|..++..++..+.+|+.
T Consensus 91 ~V~nlp~~---~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i 158 (167)
T 2cjk_A 91 FVGGIGPD---VRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKI 158 (167)
T ss_dssp EEEEECTT---CCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCE
T ss_pred EECCCCCC---CCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEE
Confidence 45665432 224668888899999988887432 356667999999999866666677653
No 161
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=69.13 E-value=11 Score=23.40 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=42.7
Q ss_pred cccccccccCCCCccHHHHHHHhhcCCceEEEcC------------CcCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 5 PLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG------------QVPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 5 PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g------------~~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
-+||||..- -....+.++..+||+|..+.+- +.-+|...+++.++.++.. ++..+.+|+.
T Consensus 8 l~V~nLp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (98)
T 2cpf_A 8 LFIKNLNFS---TTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKL 80 (98)
T ss_dssp EEEESCCTT---CCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEEC
T ss_pred EEEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 357777643 2246788889999999888764 2345677899999999975 5666666653
No 162
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.02 E-value=17 Score=22.08 Aligned_cols=59 Identities=17% Similarity=0.310 Sum_probs=41.1
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC-CcCEEEeccHHHHHHHHH-hCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG-QVPAIIVSSPQVAKEVMK-THDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g-~~~~vvv~~~~~ike~l~-~~~~~f~~Rp~ 67 (221)
++|||..- -....+.++..+||+|..+++- +.-+|-..+++.++.++. -++..+.+|+.
T Consensus 12 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 72 (90)
T 2dnq_A 12 FIGNLPRE---ATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNI 72 (90)
T ss_dssp EEESCCSS---CCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred EEeCCCCC---CCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccCCcEE
Confidence 46776543 2246788999999999888764 344556679999988884 34556777764
No 163
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=68.92 E-value=11 Score=22.66 Aligned_cols=58 Identities=17% Similarity=0.358 Sum_probs=40.3
Q ss_pred ccccccccCCCCccHHHHHHHhhc----C-------CceEEEcC---CcCEEEeccHHHHHHHHHhCCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKY----G-------PLMLLQLG---QVPAIIVSSPQVAKEVMKTHDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~Y----G-------~i~~l~~g---~~~~vvv~~~~~ike~l~~~~~~f~~Rp 66 (221)
++|||..- -....+.++.++| | +|..+++. +.-.|-..+++.+..++.-++..+.+|+
T Consensus 10 ~V~nLp~~---~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~~l~g~~~~g~~ 81 (87)
T 2hzc_A 10 YVGNIPFG---ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQS 81 (87)
T ss_dssp EEESCCTT---CCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred EEeCCCCC---CCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHHhcCCCEECCeE
Confidence 57777543 2246677888888 8 89888875 3446667799999999855555565554
No 164
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.86 E-value=7.8 Score=23.81 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=39.5
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
++|||..- -....+.++.++||+|..+.+-. .-+|...+++.++.++.. ++..+.+|+
T Consensus 19 ~v~nlp~~---~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (95)
T 2cqc_A 19 GVFGLSLY---TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 86 (95)
T ss_dssp EEESCCSS---CCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred EEECCCCC---CCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 46666542 22467888999999998887731 235667799999999874 444555544
No 165
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=68.63 E-value=11 Score=24.35 Aligned_cols=59 Identities=20% Similarity=0.287 Sum_probs=41.3
Q ss_pred cccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 5 PLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 5 PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
-++|||..- -....+.++..+||+|..+++-. .-+|.-.+++.|+.++.. ++..+.+|+
T Consensus 9 lfV~nL~~~---~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~ 77 (110)
T 3s8s_A 9 VTFARLNDN---VRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNI 77 (110)
T ss_dssp EEEESCCTT---CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEECCCCC---CCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 357877643 22467888999999999888631 236778899999999863 444555554
No 166
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.85 E-value=17 Score=22.97 Aligned_cols=59 Identities=8% Similarity=0.083 Sum_probs=41.2
Q ss_pred ccccccccCCCCccHHHHHHHhhcCC-ceEEEcC----------CcCEEEeccHHHHHHHHHh--CC-CccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGP-LMLLQLG----------QVPAIIVSSPQVAKEVMKT--HD-VVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~-i~~l~~g----------~~~~vvv~~~~~ike~l~~--~~-~~f~~Rp~ 67 (221)
++|||..- -....+.++..+||+ |..+.+- +.-+|-..+++.+..++.. ++ ..+.+|+.
T Consensus 12 ~V~nLp~~---~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 12 FIGGIPKM---KKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp EEECCCTT---SCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred EEeCCCCc---CCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 57777542 224678899999998 9888774 2335666799999999974 22 56677664
No 167
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.53 E-value=11 Score=23.25 Aligned_cols=59 Identities=7% Similarity=0.197 Sum_probs=41.2
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC----cCEEEeccHHHHHHHHHhCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ----VPAIIVSSPQVAKEVMKTHDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~----~~~vvv~~~~~ike~l~~~~~~f~~Rp~ 67 (221)
++|||..- -....+.++..+||+|..+..-. .-+|-..+++.++.++.-++..+.+|+.
T Consensus 12 ~V~nl~~~---~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~l~g~~~~g~~l 74 (94)
T 2e5g_A 12 FVSGFPRG---VDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGHRL 74 (94)
T ss_dssp EEECCCTT---CCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHTCSCCEETTEEC
T ss_pred EEECCCCC---CCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHhcCCeEECCEEE
Confidence 56777543 22467888999999988774322 2345667999999999866667777764
No 168
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=67.53 E-value=15 Score=22.65 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=41.5
Q ss_pred CcccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 4 LPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 4 ~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
-=+||||..- -....+.++..+||+|..+.+-. .-+|-..+.+.+..++.. ++..+.+|+
T Consensus 4 ~l~V~nLp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 73 (96)
T 2x1f_A 4 VVYLGSIPYD---QTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRF 73 (96)
T ss_dssp EEEEESCCTT---CCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEECCCCC---CCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 3467877543 22467888999999999988742 235667799999998853 455555554
No 169
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=67.48 E-value=9.8 Score=25.42 Aligned_cols=58 Identities=14% Similarity=0.271 Sum_probs=40.9
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
+||||..- -....+.++..+||+|..+.+-. .-+|...+.+.|..++.. ++..+.+|+
T Consensus 46 ~V~nLp~~---~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 113 (139)
T 1u6f_A 46 MVNYIPTT---VDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKR 113 (139)
T ss_dssp EEESCSTT---CCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCE
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 46666542 22467888999999998887632 235777899999999874 555667765
No 170
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.41 E-value=6.2 Score=25.42 Aligned_cols=58 Identities=10% Similarity=0.072 Sum_probs=39.6
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC---------CcCEEEeccHHHHHHHHHhCCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG---------QVPAIIVSSPQVAKEVMKTHDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g---------~~~~vvv~~~~~ike~l~~~~~~f~~Rp 66 (221)
+||||..- -....+.++..+||.|..+.+- +.-+|...+.+.++.++.-++..+.+|+
T Consensus 29 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 95 (114)
T 2cq4_A 29 FCMQLAAR---IRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVP 95 (114)
T ss_dssp EEESCCTT---CCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEE
T ss_pred EEeCCCCC---CCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeE
Confidence 46766542 2246688899999999988874 1335667788888888854555555554
No 171
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=67.39 E-value=9.5 Score=26.53 Aligned_cols=60 Identities=8% Similarity=0.166 Sum_probs=41.8
Q ss_pred cccccccccCCCCccHHHHHHHhhcCCceEEEcC---------CcCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 5 PLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG---------QVPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 5 PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g---------~~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
-+||||..- -....+.++..+||+|..+.+- +.-+|...+++.++.++.. ++..+.+|+.
T Consensus 75 l~V~nLp~~---~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 144 (165)
T 1rk8_A 75 LFVTSIHEE---AQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 144 (165)
T ss_dssp EEEESCCTT---CCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred EEEeCCCCC---CCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 356776543 2346788999999999888774 2346667799999988863 5556666653
No 172
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=67.29 E-value=17 Score=22.46 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=39.2
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceE--------EEcCC---------cCEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLML--------LQLGQ---------VPAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~--------l~~g~---------~~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
++|||..- -....+.++.++||.|.. +.+-. .-+|...+.+.++.++.. ++..+.+|+
T Consensus 17 ~V~nLp~~---~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 92 (99)
T 2la6_A 17 FVQGLGEN---VTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNP 92 (99)
T ss_dssp EEECCCSS---CCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSB
T ss_pred EEeCCCCC---CCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 36766542 224678889999999876 55421 235667799999998863 555666665
No 173
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=66.94 E-value=14 Score=23.43 Aligned_cols=56 Identities=11% Similarity=0.125 Sum_probs=40.1
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC--CcCEEEeccHHHHHHHHHh-CCCccCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG--QVPAIIVSSPQVAKEVMKT-HDVVFAS 64 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g--~~~~vvv~~~~~ike~l~~-~~~~f~~ 64 (221)
+||||..- -....+.++..+||+|..+.+- +.-+|...+++.++.++.. ++..+.+
T Consensus 19 ~V~nLp~~---~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 19 VVSGLPPS---GSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp EEESCCSS---CCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 57777542 2246788899999999888774 4556777899999999874 4445555
No 174
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=66.91 E-value=17 Score=23.22 Aligned_cols=59 Identities=25% Similarity=0.393 Sum_probs=40.9
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHH-hCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMK-THDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~-~~~~~f~~Rp~ 67 (221)
++|||..- -....+.++..+||+|..+.+-. .-+|...+++.+..++. -++..+.+|+.
T Consensus 30 ~V~nLp~~---~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 30 YVGSLHFN---ITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp EEECCCSS---CCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 46766542 22467888899999998887631 34677789999999985 35556666653
No 175
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.29 E-value=9.5 Score=24.42 Aligned_cols=59 Identities=12% Similarity=0.249 Sum_probs=41.3
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC--------cCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ--------VPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~--------~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
+||||..- -....+.++..+||+|..+.+-. .-+|...+.+.++.++.. ++..+.+|+.
T Consensus 19 ~V~nlp~~---~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (114)
T 2do0_A 19 FVANLDYK---VGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPM 86 (114)
T ss_dssp EEESCCTT---CCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEE
Confidence 56776542 23467889999999998777643 345677799999998873 5556666653
No 176
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=66.26 E-value=14 Score=23.11 Aligned_cols=50 Identities=20% Similarity=0.175 Sum_probs=34.5
Q ss_pred CcccccccccCCCCccHHHHHHHhhcCCceEEEcCC---cCEEEeccHHHHHHHHH
Q 048376 4 LPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---VPAIIVSSPQVAKEVMK 56 (221)
Q Consensus 4 ~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---~~~vvv~~~~~ike~l~ 56 (221)
|-++|||..- .+ ...+.++..+||+|..+++.. .-+|-..+++.|..+..
T Consensus 9 wL~VgNL~~~-~t--e~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~ 61 (89)
T 2wbr_A 9 WLLLKNLTAQ-ID--GPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQM 61 (89)
T ss_dssp EEEEECCCTT-CC--CHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred eEEEeCCCcc-CC--HHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHH
Confidence 5568888663 11 378999999999999988742 23455557766666653
No 177
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=66.00 E-value=7.5 Score=28.03 Aligned_cols=59 Identities=12% Similarity=0.163 Sum_probs=41.4
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC--------CcCEEEeccHHHHHHHHHhCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG--------QVPAIIVSSPQVAKEVMKTHDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g--------~~~~vvv~~~~~ike~l~~~~~~f~~Rp~ 67 (221)
++|||..- .....+.++..+||+|..+++- +.-+|...+.+.|+.++...+..+.+|+.
T Consensus 113 ~V~nLp~~---~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l 179 (193)
T 2voo_A 113 YIKGFPTD---ATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDL 179 (193)
T ss_dssp EEECCCTT---CCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEEC
T ss_pred EecCCCCc---CCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEE
Confidence 46666532 3357788999999999887663 23456677999999999755556666653
No 178
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=65.82 E-value=6.3 Score=24.80 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=40.0
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCCc---------CEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQV---------PAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~---------~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
+||||..- -....+.++..+||+|..+.+-.. -+|...+++.++.++.. ++..+.+|+
T Consensus 19 ~V~nlp~~---~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (103)
T 2cq0_A 19 RVTNLSED---TRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLI 86 (103)
T ss_dssp EEESCCTT---CCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred EEeCCCCC---CCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 46766543 224567888899999988887432 36777899999999873 444555654
No 179
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=65.79 E-value=7.8 Score=24.76 Aligned_cols=60 Identities=18% Similarity=0.255 Sum_probs=39.8
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC-CcCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG-QVPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g-~~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
+||||..-. -....+.++..+||+|..+.+. +.-+|-..+.+.++.++.. ++..+.+|+.
T Consensus 31 ~V~nl~~~~--~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 92 (110)
T 1wf1_A 31 FIGNLNTAL--VKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAGQTL 92 (110)
T ss_dssp EECSCCCSS--CCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHHTTCEETTEEC
T ss_pred EEeCCCccc--CCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 567665420 2246788899999999888873 2233445688888888853 5556666653
No 180
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=65.35 E-value=27 Score=23.11 Aligned_cols=60 Identities=18% Similarity=0.223 Sum_probs=41.4
Q ss_pred cccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 5 PLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 5 PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
-+||||..- -....+.++..+||+|..+++-. .-+|-..+++.++.++.. ++..+.+|+.
T Consensus 49 l~V~nLp~~---~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l 118 (129)
T 2kxn_B 49 LGVFGLSLY---TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 118 (129)
T ss_dssp BCEETCTTS---CCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred EEEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 356766543 22467888999999999888732 235666799999999873 5555666653
No 181
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.14 E-value=12 Score=22.96 Aligned_cols=59 Identities=19% Similarity=0.289 Sum_probs=39.7
Q ss_pred cccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 5 PLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 5 PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
-+||||..- -....+.++.++||+|..+++-. .-+|-..+++.++.++.. ++..+.+|+
T Consensus 19 l~V~nlp~~---~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 87 (94)
T 2e5h_A 19 VYVSNLPFS---LTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRV 87 (94)
T ss_dssp EEEESCCTT---SCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEE
T ss_pred EEEECCCCC---CCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 356776542 22467888999999999888732 346777899999998852 333444443
No 182
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=64.63 E-value=10 Score=26.77 Aligned_cols=59 Identities=12% Similarity=0.276 Sum_probs=41.9
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCCc---------CEEEeccHHHHHHHHHhCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQV---------PAIIVSSPQVAKEVMKTHDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~---------~~vvv~~~~~ike~l~~~~~~f~~Rp~ 67 (221)
++|||..- -....+.++..+||+|..+.+-.. -+|-..+++.+..++..++..+.+|+.
T Consensus 108 ~V~nLp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i 175 (196)
T 1l3k_A 108 FVGGIKED---TEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNC 175 (196)
T ss_dssp EEECCTTT---CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEEC
T ss_pred EEeCCCCC---CCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEE
Confidence 45665432 224678888899999988876422 356677999999999877777777763
No 183
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=64.46 E-value=10 Score=26.79 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=43.0
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHhCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKTHDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~~~~~f~~Rp~ 67 (221)
++|||..- -....+.++.++||+|..+++-. .-+|...+++.|..++..++..+.+|+.
T Consensus 17 ~V~nLp~~---~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l 84 (196)
T 1l3k_A 17 FIGGLSFE---TTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVV 84 (196)
T ss_dssp EEESCCTT---CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEEC
T ss_pred EEeCCCCC---CCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEe
Confidence 56776542 22467889999999998877632 3467788999999999877666767653
No 184
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.32 E-value=13 Score=23.33 Aligned_cols=57 Identities=12% Similarity=0.225 Sum_probs=40.1
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHhCCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKTHDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~~~~~f~~Rp 66 (221)
+||||..- -....+.++..+||+|..+.+-. .-+|...+++.++.++.. ...+.+|+
T Consensus 19 ~v~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~ 84 (103)
T 2cqg_A 19 IVLGLPWK---TTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRW 84 (103)
T ss_dssp EEESCCSS---CCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEE
T ss_pred EEEcCCCc---CCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeE
Confidence 57776542 22467888999999998887632 245667899999999973 44566654
No 185
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=63.89 E-value=23 Score=21.79 Aligned_cols=59 Identities=14% Similarity=0.152 Sum_probs=40.7
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---cCEEEeccHHHHHHHHHh-CCCccC--CCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---VPAIIVSSPQVAKEVMKT-HDVVFA--SRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---~~~vvv~~~~~ike~l~~-~~~~f~--~Rp~ 67 (221)
+||||..- -....+.++..+||+|..+++-. .-+|...+.+.++.++.. ++..+. +|+.
T Consensus 21 ~V~nlp~~---~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l 85 (97)
T 1why_A 21 WVGGLGPN---TSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRL 85 (97)
T ss_dssp EEECCCSS---CCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEE
Confidence 56766543 22467888999999999888753 345666799999888863 555555 5553
No 186
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.29 E-value=6.8 Score=25.33 Aligned_cols=58 Identities=9% Similarity=0.021 Sum_probs=40.0
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCc-eEEEcC--------CcCEEEeccHHHHHHHHHhCCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPL-MLLQLG--------QVPAIIVSSPQVAKEVMKTHDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i-~~l~~g--------~~~~vvv~~~~~ike~l~~~~~~f~~Rp 66 (221)
+||||..- -....+.++..+||.| ..+++- +.-+|...+.+.++.++..++..+.+|+
T Consensus 19 ~V~nLp~~---~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 85 (114)
T 2cpy_A 19 HITNIPFS---ITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGRE 85 (114)
T ss_dssp EEESCCTT---SCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEE
T ss_pred EEeCcCCc---CCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeE
Confidence 46766543 2246688889999998 445542 2456777899999999977666666665
No 187
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=63.02 E-value=9.7 Score=24.60 Aligned_cols=58 Identities=14% Similarity=0.182 Sum_probs=38.7
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
+||||..- -....+.++.++||+|..+++-. .-+|...+.+.++.++.. ++..+.+|+
T Consensus 44 ~V~nlp~~---~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 111 (118)
T 2khc_A 44 FIYHLPQE---FTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKR 111 (118)
T ss_dssp EEECSCTT---CCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEE
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 46666542 22467888999999999888742 235666789999888864 444455544
No 188
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=62.99 E-value=13 Score=24.24 Aligned_cols=61 Identities=16% Similarity=0.176 Sum_probs=42.6
Q ss_pred cccccccccCCCCccHHHHHHHhhcCCceEEEcCC---cCEEEeccHHHHHHHHHh---CCCccCCCCC
Q 048376 5 PLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---VPAIIVSSPQVAKEVMKT---HDVVFASRPH 67 (221)
Q Consensus 5 PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---~~~vvv~~~~~ike~l~~---~~~~f~~Rp~ 67 (221)
-+||||..- .-....+.++..+||.|..+++.. .-+|-..+.+.|..++.. +...+.+|+.
T Consensus 28 l~V~NLp~~--~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 28 IHLSNLPHS--GYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp EEEESCCCS--SCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred EEEeCCCCc--cCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 457777652 012356888899999999999863 346777799988888863 3445778875
No 189
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=62.95 E-value=12 Score=22.74 Aligned_cols=58 Identities=16% Similarity=0.287 Sum_probs=38.3
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
++|||..- -....+.++-.+||+|..+++-. .-.|...+.+ +.+++.. ++..+.+|+.
T Consensus 5 ~V~nLp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l 72 (90)
T 2ki2_A 5 YVGNLVYS---ATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTI 72 (90)
T ss_dssp EEEEECTT---SSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSC
T ss_pred EECCCCCC---CCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEE
Confidence 46776543 22356777888999998888742 2356667888 8777764 5555666664
No 190
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.91 E-value=9.4 Score=23.50 Aligned_cols=59 Identities=19% Similarity=0.302 Sum_probs=40.6
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEE-EcCC---------cCEEEeccHHHHHHHHH-hCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLL-QLGQ---------VPAIIVSSPQVAKEVMK-THDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l-~~g~---------~~~vvv~~~~~ike~l~-~~~~~f~~Rp~ 67 (221)
++|||..- -....+.++..+||+|..+ ++-. .-+|-..+++.++.++. -++..+.+|+.
T Consensus 9 ~V~nLp~~---~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 78 (96)
T 1x5t_A 9 FIGNLDPE---IDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPI 78 (96)
T ss_dssp EEECCCTT---CCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEEC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 56776543 2246788899999998776 5532 23566779999999997 35555666654
No 191
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=62.58 E-value=18 Score=22.83 Aligned_cols=59 Identities=14% Similarity=0.204 Sum_probs=40.5
Q ss_pred cccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHh-C------CCccCCCC
Q 048376 5 PLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKT-H------DVVFASRP 66 (221)
Q Consensus 5 PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~-~------~~~f~~Rp 66 (221)
-+||||..- -....+.++..+||+|..+.+-. .-+|-..+.+.+..++.. + +..+.+|+
T Consensus 18 l~V~nLp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 18 VFIRNLSFD---SEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp EEEESCCTT---CCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred EEEECCCCC---CCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 357777543 22467888889999999888752 235666799999998864 2 44556665
No 192
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=62.14 E-value=19 Score=23.42 Aligned_cols=58 Identities=21% Similarity=0.300 Sum_probs=39.9
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC--------cCEEEeccHHHHHHHHH-hCCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ--------VPAIIVSSPQVAKEVMK-THDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~--------~~~vvv~~~~~ike~l~-~~~~~f~~Rp 66 (221)
+||||..- -....+.++..+||+|..+++-. .-+|-..+.+.++.++. -++..+.+|+
T Consensus 39 ~V~nlp~~---~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 105 (124)
T 2kt5_A 39 LVSNLDFG---VSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 105 (124)
T ss_dssp EEESCCSS---CCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 46666432 22466888899999998888732 33566679999998886 3555666665
No 193
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.19 E-value=17 Score=23.10 Aligned_cols=59 Identities=14% Similarity=0.212 Sum_probs=40.6
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCce--------EEEcCC---------cCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLM--------LLQLGQ---------VPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~--------~l~~g~---------~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
+||||..- -....+.++..+||+|. .+.+-. .-+|...+++.|+.++.. ++..+.+|+.
T Consensus 19 ~V~nLp~~---~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 95 (113)
T 2cpe_A 19 YVQGLNDS---VTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKL 95 (113)
T ss_dssp EEECCCTT---CCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEEC
T ss_pred EEcCCCCC---CCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEE
Confidence 57777542 22467889999999987 355432 236677799999999874 6666777664
No 194
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=61.03 E-value=27 Score=21.76 Aligned_cols=59 Identities=19% Similarity=0.303 Sum_probs=39.7
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHH-hCCCcc---CCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMK-THDVVF---ASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~-~~~~~f---~~Rp~ 67 (221)
+||||..- -....+.++..+||+|..+++-. .-+|-..+++.++.++. -++..+ .+|+.
T Consensus 17 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 17 FIGQIPRN---LDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp EEESCCTT---CCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 46766542 22467889999999999988743 23566679999988885 233344 45653
No 195
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.02 E-value=19 Score=22.28 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=40.8
Q ss_pred ccccccccCCCCccHHHHHHHhhc--CCceEEEcC-CcCEEEeccHHHHHHHHH-hCCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKY--GPLMLLQLG-QVPAIIVSSPQVAKEVMK-THDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~Y--G~i~~l~~g-~~~~vvv~~~~~ike~l~-~~~~~f~~Rp 66 (221)
+||||..- -....+.++..+| |.|..+.+- +.-+|...+++.+..++. -++..+.+|+
T Consensus 19 ~V~nLp~~---~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 19 YVRNLMLS---TSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp EEESCCTT---CCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 56776543 2246788899999 889888764 344566679999999886 4555666664
No 196
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=61.02 E-value=23 Score=25.86 Aligned_cols=60 Identities=17% Similarity=0.217 Sum_probs=43.2
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC----CcCEEEeccHHHHHHHHH-hCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG----QVPAIIVSSPQVAKEVMK-THDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g----~~~~vvv~~~~~ike~l~-~~~~~f~~Rp~ 67 (221)
++|||..- .-....+.++.++||+|..+++- +.-+|...+++.++.++. -++..+.+|+.
T Consensus 38 ~V~nLp~~--~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 102 (229)
T 2adc_A 38 LVSNLNPE--RVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPI 102 (229)
T ss_dssp EEESCCTT--TCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBC
T ss_pred EEeCCCcc--cCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 46666540 12246788899999999988875 345677889999999985 56667777764
No 197
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=60.69 E-value=25 Score=24.83 Aligned_cols=60 Identities=17% Similarity=0.217 Sum_probs=43.6
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC----CcCEEEeccHHHHHHHHH-hCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG----QVPAIIVSSPQVAKEVMK-THDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g----~~~~vvv~~~~~ike~l~-~~~~~f~~Rp~ 67 (221)
++|||..- .-....+.++..+||+|..+++- +.-.|...+++.++.++. -++..+.+|+.
T Consensus 7 ~v~nlp~~--~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l 71 (198)
T 1qm9_A 7 LVSNLNPE--RVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPI 71 (198)
T ss_dssp EEECCCSS--SCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCC
T ss_pred EEeCCCcc--cCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEE
Confidence 46766541 12246788899999999998874 345777889999999986 56667777764
No 198
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=59.77 E-value=28 Score=24.43 Aligned_cols=55 Identities=13% Similarity=0.146 Sum_probs=37.9
Q ss_pred cccccccCCCCccHHHHHHHhhcCCceEEEcC-----CcCEEEeccHHHHHHHHHh-CCCccCC
Q 048376 7 IGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG-----QVPAIIVSSPQVAKEVMKT-HDVVFAS 64 (221)
Q Consensus 7 iGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g-----~~~~vvv~~~~~ike~l~~-~~~~f~~ 64 (221)
||||..- -....+.++..+||.|-.+++. +.-+|-..|.+.+.+++.. ++..+.+
T Consensus 51 VgNL~~~---vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g 111 (164)
T 1sjr_A 51 VENLFYP---VTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN 111 (164)
T ss_dssp ECSCCSC---CCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSS
T ss_pred EeCcCCC---CCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 6776432 2246788999999999888873 2356777799988888863 4445533
No 199
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=59.50 E-value=4.6 Score=25.45 Aligned_cols=58 Identities=9% Similarity=0.265 Sum_probs=40.7
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC--------cCEEEeccHHHHHHHHHhCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ--------VPAIIVSSPQVAKEVMKTHDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~--------~~~vvv~~~~~ike~l~~~~~~f~~Rp~ 67 (221)
++|||..- -....+.++..+||+|..+.+-. .-.|...+++.++.++. ++..+.+|+.
T Consensus 13 ~V~nLp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l 78 (102)
T 2xs2_A 13 FVGGIDVR---MDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKL 78 (102)
T ss_dssp EEECCCTT---CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEEC
T ss_pred EEeCCCCC---CCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEE
Confidence 46776542 22466888999999998887632 33566678999999987 6666666654
No 200
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=58.99 E-value=13 Score=28.34 Aligned_cols=86 Identities=12% Similarity=0.170 Sum_probs=55.1
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC-------CcCEEEeccHHHHHHHHHhCCCccCCCCCCchhhhhhcCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG-------QVPAIIVSSPQVAKEVMKTHDVVFASRPHFPPAQIISYNY 78 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g-------~~~~vvv~~~~~ike~l~~~~~~f~~Rp~~~~~~~~~~~~ 78 (221)
++|||..- -....+.++.++||+|..+++- +.-+|...+++.|..++..++..+.+|+...... ..
T Consensus 45 ~V~nLp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~----~~ 117 (292)
T 2ghp_A 45 LVKNLPKS---YNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHL----TE 117 (292)
T ss_dssp EEEEECTT---CCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEEC----CS
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEEC----CC
Confidence 46666542 2246788999999999888763 3446777899999999977777788876421110 11
Q ss_pred Cceee--CCCChHHHHHHHHHH
Q 048376 79 RDIVF--SPYGDSWKQLRKICV 98 (221)
Q Consensus 79 ~~~~~--~~~g~~Wk~~Rr~~~ 98 (221)
..+.. .+..-....++.++.
T Consensus 118 ~~l~v~nlp~~~t~~~l~~~f~ 139 (292)
T 2ghp_A 118 CTLWMTNFPPSYTQRNIRDLLQ 139 (292)
T ss_dssp CEEEEECCCTTCCHHHHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHH
Confidence 22211 234556777777753
No 201
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=58.76 E-value=27 Score=24.59 Aligned_cols=59 Identities=20% Similarity=0.298 Sum_probs=40.9
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC--------cCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ--------VPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~--------~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
+||||..- -....+.++..+||+|..+.+-. .-+|...+.+.|+.++.. ++..+.+|+.
T Consensus 92 ~V~nLp~~---~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l 159 (177)
T 2f3j_A 92 LVSNLDFG---VSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPM 159 (177)
T ss_dssp EEECCCSC---CCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEE
Confidence 45665432 22466888899999999888732 336777899999999873 5556667664
No 202
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=58.68 E-value=15 Score=24.86 Aligned_cols=59 Identities=12% Similarity=0.173 Sum_probs=41.7
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC--------CcCEEEeccHHHHHHHH-HhCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG--------QVPAIIVSSPQVAKEVM-KTHDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g--------~~~~vvv~~~~~ike~l-~~~~~~f~~Rp~ 67 (221)
++|||..- -....+.++.++||+|..+++- +.-.|...+++.+..++ .-++..+.+|+.
T Consensus 4 ~V~nlp~~---~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 71 (166)
T 3md3_A 4 YVGNLDKA---ITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIV 71 (166)
T ss_dssp EEEEEETT---CCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred EECCCCCc---CCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCee
Confidence 46777542 2246788899999999988873 23466777999999998 456666666653
No 203
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=58.45 E-value=12 Score=23.95 Aligned_cols=59 Identities=10% Similarity=0.147 Sum_probs=39.7
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCc----eEEEcC-----CcCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPL----MLLQLG-----QVPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i----~~l~~g-----~~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
+||||..- -....+.++..+||.| ..+... +.-+|...+.+.++.++.. ++..+.+|+.
T Consensus 29 ~V~nLp~~---~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 29 YLKNLSPR---VTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp EEECCCTT---CCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred EEeCCCCC---CCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 57776542 2246778888999987 555432 2345667899999999874 5666777764
No 204
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=57.35 E-value=17 Score=24.03 Aligned_cols=57 Identities=12% Similarity=0.185 Sum_probs=38.1
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHh-CCCccCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKT-HDVVFASR 65 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~-~~~~f~~R 65 (221)
+||||..- -....+.++..+||+|..+.+-. .-+|...+++.++.++.. ++..+.+|
T Consensus 67 ~v~nlp~~---~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 133 (140)
T 2ku7_A 67 YVGGLAEE---VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 133 (140)
T ss_dssp EEECCCTT---CCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTE
T ss_pred EEEeCCCC---CCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 46666542 22467888999999999988732 235667799999998853 33334444
No 205
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=57.21 E-value=15 Score=23.46 Aligned_cols=61 Identities=11% Similarity=0.095 Sum_probs=42.2
Q ss_pred cccccccccCCCCccHHHHHHHhhcCCceEEEcCC---cCEEEeccHHHHHHHHHh---CCCccCCCCC
Q 048376 5 PLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---VPAIIVSSPQVAKEVMKT---HDVVFASRPH 67 (221)
Q Consensus 5 PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---~~~vvv~~~~~ike~l~~---~~~~f~~Rp~ 67 (221)
-+||||..- .-....+.++..+||.|..+++-. .-+|-..+.+.|.+++.. ....+.+|+.
T Consensus 18 l~V~nLp~~--~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 18 VHIMDFQRG--KNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp EEEESCCCS--SSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred EEEeCCCCC--cCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 356777651 112356888899999999998753 457778899999888863 2334677764
No 206
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=57.19 E-value=22 Score=24.13 Aligned_cols=58 Identities=7% Similarity=0.043 Sum_probs=42.3
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC--------cCEEEeccHHHHHHHHHhCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ--------VPAIIVSSPQVAKEVMKTHDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~--------~~~vvv~~~~~ike~l~~~~~~f~~Rp~ 67 (221)
++|||..- -....+.++.++|| +..+++-. .-+|...+++.++.++..+...+.+|+.
T Consensus 50 fV~nLp~~---~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i 115 (139)
T 2hgn_A 50 HMRGLPYK---ATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYI 115 (139)
T ss_dssp ECCSCCTT---CCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEE
Confidence 56666543 22467889999999 55777642 3577888999999999777777888864
No 207
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.14 E-value=21 Score=22.30 Aligned_cols=58 Identities=7% Similarity=0.138 Sum_probs=41.0
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC----------cCEEEeccHHHHHHHHHhCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ----------VPAIIVSSPQVAKEVMKTHDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~----------~~~vvv~~~~~ike~l~~~~~~f~~Rp~ 67 (221)
+||||..- -....+.++..+|| |..+++-. .-+|-..+++.++.++.-++..+.+|+.
T Consensus 19 ~V~nlp~~---~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l 86 (104)
T 1wi8_A 19 FLGNLPYD---VTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRI 86 (104)
T ss_dssp EEESCCSS---CCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEEC
T ss_pred EEeCCCCc---CCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEE
Confidence 46776542 22467888999999 98888742 2357778999999999556666777654
No 208
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=56.73 E-value=35 Score=21.63 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=41.9
Q ss_pred CcccccccccCCCCccHHHHHHHhhcCCceEEEcC---CcCEEEeccHHHHHHHHHh---CCCccCCCCC
Q 048376 4 LPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG---QVPAIIVSSPQVAKEVMKT---HDVVFASRPH 67 (221)
Q Consensus 4 ~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g---~~~~vvv~~~~~ike~l~~---~~~~f~~Rp~ 67 (221)
.-++|||..- -....+.++..+||.|..+.+- +.-+|-..+.+.|..++.. +...+.+|+.
T Consensus 17 ~l~V~nLp~~---~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 17 VVHVRGLCES---VVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp EEEEESCCSS---CCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred EEEEeCCCCC---CCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3457776542 2246788999999999988864 3456667788888888753 3334677774
No 209
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=55.92 E-value=18 Score=23.80 Aligned_cols=64 Identities=13% Similarity=0.114 Sum_probs=40.7
Q ss_pred CcccccccccC--CCCccHHHHHHHhhcCCceEEEcCCc-------------CEEEeccHHHHHHHHH-hCCCccCCCCC
Q 048376 4 LPLIGNLHQLA--GSLPHHRLRDLTNKYGPLMLLQLGQV-------------PAIIVSSPQVAKEVMK-THDVVFASRPH 67 (221)
Q Consensus 4 ~PiiGnl~~l~--~~~~~~~~~~~~~~YG~i~~l~~g~~-------------~~vvv~~~~~ike~l~-~~~~~f~~Rp~ 67 (221)
.-+|.|+..-. ......-+.+...+||+|..+++-.. -.|--.+++.|..++. =++..|.+|+.
T Consensus 22 vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i 101 (118)
T 3ue2_A 22 VMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKV 101 (118)
T ss_dssp EEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 34567775421 12334566777789999998876321 2355558888877764 36677888875
No 210
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.38 E-value=18 Score=22.97 Aligned_cols=60 Identities=10% Similarity=0.097 Sum_probs=41.6
Q ss_pred cccccccccCCCCccHHHHHHHhhcCCceEEEcC---CcCEEEeccHHHHHHHHHh---CCCccCCCCC
Q 048376 5 PLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG---QVPAIIVSSPQVAKEVMKT---HDVVFASRPH 67 (221)
Q Consensus 5 PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g---~~~~vvv~~~~~ike~l~~---~~~~f~~Rp~ 67 (221)
-+||||..- -....+.++..+||.|..+.+- +.-+|-..+.+.|..++.. ++..+.+|+.
T Consensus 18 l~V~nLp~~---~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 18 LHIRKLPGE---VTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp EEEESCCTT---CCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred EEEeCCCCC---CCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 457777642 2246688899999999888764 3456777799998888863 3445667764
No 211
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=54.77 E-value=22 Score=22.43 Aligned_cols=58 Identities=10% Similarity=-0.004 Sum_probs=40.5
Q ss_pred ccccccccCCCCccHHHHHHHhhcCC---ceEEEcCC--------cCEEEeccHHHHHHHHHhCCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGP---LMLLQLGQ--------VPAIIVSSPQVAKEVMKTHDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~---i~~l~~g~--------~~~vvv~~~~~ike~l~~~~~~f~~Rp 66 (221)
++|||..- . ....+.++..+||. |..+.+-. .-+|...+.+.++.++..++..+.+|+
T Consensus 15 ~V~nLp~~-~--te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 83 (107)
T 2lmi_A 15 RAQGLPWS-C--TMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRY 83 (107)
T ss_dssp EEECCCSS-C--CSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSC
T ss_pred EEeCCCCC-C--CHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeE
Confidence 47777653 1 23668888889887 77776632 346777899999999986666666665
No 212
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=54.63 E-value=20 Score=27.08 Aligned_cols=62 Identities=15% Similarity=0.274 Sum_probs=41.5
Q ss_pred cccccccccCCCCcc--HHHHHHHhhcCCceEEEcCC------cCEEEeccHHHHHHHHH-hCCCccCCCCC
Q 048376 5 PLIGNLHQLAGSLPH--HRLRDLTNKYGPLMLLQLGQ------VPAIIVSSPQVAKEVMK-THDVVFASRPH 67 (221)
Q Consensus 5 PiiGnl~~l~~~~~~--~~~~~~~~~YG~i~~l~~g~------~~~vvv~~~~~ike~l~-~~~~~f~~Rp~ 67 (221)
-+||||..- .+... ..|.++..+||+|..+++-. .-+|...+.+.++.++. -++..+.+|+.
T Consensus 12 l~V~nlp~~-~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 12 IYINNLNEK-IKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred EEEeCCCCC-CCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 367887653 22212 22668889999999888532 45677779999998883 45666677763
No 213
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=54.48 E-value=20 Score=29.47 Aligned_cols=60 Identities=13% Similarity=0.152 Sum_probs=42.3
Q ss_pred cccccccccCCCCccHHHHHHHhhcCCceEEEcC---------CcCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 5 PLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG---------QVPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 5 PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g---------~~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
-+||||..- -....|.++..+||+|..+.+- +.-+|...+++.|..|+.. ++..+.+++.
T Consensus 105 lfV~nL~~~---~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i 174 (437)
T 3pgw_S 105 LFVARVNYD---TTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRV 174 (437)
T ss_pred EEEeCCCCC---CCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEE
Confidence 367777543 1246788888999999888873 2346677799999998854 6666777653
No 214
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=53.55 E-value=33 Score=24.39 Aligned_cols=59 Identities=12% Similarity=0.201 Sum_probs=40.9
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCCc---------CEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQV---------PAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~---------~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
++|||..- -....+.++..+||+|..+.+-.. -+|-..+.+.+..++.. ++..+.+|+.
T Consensus 129 ~v~nlp~~---~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i 197 (216)
T 2qfj_A 129 YVASVHQD---LSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 197 (216)
T ss_dssp EEECCCTT---CCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBC
T ss_pred EEeCCCCc---CCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEE
Confidence 35555432 224678888999999988877432 25667799999988873 5666777764
No 215
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=53.29 E-value=29 Score=22.02 Aligned_cols=48 Identities=21% Similarity=0.264 Sum_probs=33.6
Q ss_pred HHHHHHHhhcCCceEEEcCC---------cC--EEEeccHHHHHHHHH-hCCCccCCCCC
Q 048376 20 HRLRDLTNKYGPLMLLQLGQ---------VP--AIIVSSPQVAKEVMK-THDVVFASRPH 67 (221)
Q Consensus 20 ~~~~~~~~~YG~i~~l~~g~---------~~--~vvv~~~~~ike~l~-~~~~~f~~Rp~ 67 (221)
..+.+...+||+|..+++-. +- .|.-.+++.|..++. =++..|.+|+.
T Consensus 30 ~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i 89 (105)
T 3v4m_A 30 EDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVV 89 (105)
T ss_dssp HHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred HHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEE
Confidence 35666677999999998742 22 455668888877774 36667888875
No 216
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.93 E-value=31 Score=21.66 Aligned_cols=47 Identities=13% Similarity=0.189 Sum_probs=35.8
Q ss_pred HHHHHHHhhcCCceEEEc-CCcCEEEeccHHHHHHHHHhCCCccCCCC
Q 048376 20 HRLRDLTNKYGPLMLLQL-GQVPAIIVSSPQVAKEVMKTHDVVFASRP 66 (221)
Q Consensus 20 ~~~~~~~~~YG~i~~l~~-g~~~~vvv~~~~~ike~l~~~~~~f~~Rp 66 (221)
..+.+.-.+||.|..+++ ..+-+|-..|.+.+..++.-++-.+.+|.
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred HHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHhcCCeEeCCeE
Confidence 456666777999999986 56667777799999999987776666664
No 217
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.61 E-value=31 Score=22.69 Aligned_cols=60 Identities=15% Similarity=0.136 Sum_probs=41.9
Q ss_pred cccccccccCCCCccHHHHHHHhhcCCceEEEcC---CcCEEEeccHHHHHHHHHh---CCCccCCCCC
Q 048376 5 PLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG---QVPAIIVSSPQVAKEVMKT---HDVVFASRPH 67 (221)
Q Consensus 5 PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g---~~~~vvv~~~~~ike~l~~---~~~~f~~Rp~ 67 (221)
-+||||..- -....+.++..+||.|..+.+- +.-+|-..+.+.|..++.. .+..+.+|+.
T Consensus 34 LfVgNLp~~---vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 34 IHIRKLPID---VTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp EEEESCCTT---CCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred EEEeCCCCC---CCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 357777653 1246788999999999888764 3456777788888888752 2345777774
No 218
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=51.32 E-value=26 Score=22.24 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=29.6
Q ss_pred hhcCCceEEEcCCc--------CEEEeccHHHHHHHHH-hCCCccCCCCC
Q 048376 27 NKYGPLMLLQLGQV--------PAIIVSSPQVAKEVMK-THDVVFASRPH 67 (221)
Q Consensus 27 ~~YG~i~~l~~g~~--------~~vvv~~~~~ike~l~-~~~~~f~~Rp~ 67 (221)
.+||+|..+++... -.|.-.+++.|..++. -++..|.+|+.
T Consensus 49 ~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 49 EKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp HHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred ccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 89999999988532 2355568888887775 36667777764
No 219
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=51.29 E-value=23 Score=26.22 Aligned_cols=59 Identities=17% Similarity=0.225 Sum_probs=41.4
Q ss_pred ccccccccCCCCccHHHHHHHhhcC--CceEEEcCCc---------CEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYG--PLMLLQLGQV---------PAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG--~i~~l~~g~~---------~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
+||||..- . ....+.++..+|| .|..+++-.. =+|...+.+.++.++.. ++..+.+|+.
T Consensus 72 fVgnL~~~-~--te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l 142 (229)
T 3q2s_C 72 YIGNLTWW-T--TDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 142 (229)
T ss_dssp EEESCCTT-C--CHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCC
T ss_pred EEeCCCCC-C--CHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEe
Confidence 57777553 1 2467888999999 8988886422 36778899999999863 4455666653
No 220
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=50.79 E-value=25 Score=21.88 Aligned_cols=58 Identities=12% Similarity=0.149 Sum_probs=40.2
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHhCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKTHDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~~~~~f~~Rp~ 67 (221)
+||||..- -....+.++..+|| |..+++-. .-+|...+++.++.++.-++..+.+|+.
T Consensus 19 ~V~nLp~~---~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l 85 (103)
T 2dng_A 19 YVGNLPFN---TVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSL 85 (103)
T ss_dssp EEESCCTT---CCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEEC
T ss_pred EEeCCCCC---CCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEE
Confidence 46776542 22466888889997 88877642 2357778999999999656666667654
No 221
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=50.77 E-value=56 Score=23.14 Aligned_cols=59 Identities=15% Similarity=0.341 Sum_probs=40.8
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC---------CcCEEEeccHHHHHHHHH-hCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG---------QVPAIIVSSPQVAKEVMK-THDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g---------~~~~vvv~~~~~ike~l~-~~~~~f~~Rp~ 67 (221)
+||||..- -....+.++.++||+|..+++- +.-+|-..+.+.++.++. -++..+.+|+.
T Consensus 32 ~V~nLp~~---~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l 100 (216)
T 2qfj_A 32 YVGSIYYE---LGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNI 100 (216)
T ss_dssp EEECCCTT---CCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCC
T ss_pred EEECCCCC---CCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeE
Confidence 45666442 2246788999999999988873 234677779999999997 45556666653
No 222
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.28 E-value=14 Score=23.38 Aligned_cols=58 Identities=9% Similarity=0.103 Sum_probs=40.3
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC--------cCEEEeccHHHHHHHHHhCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ--------VPAIIVSSPQVAKEVMKTHDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~--------~~~vvv~~~~~ike~l~~~~~~f~~Rp~ 67 (221)
++|||..- -....+.++.++||.+ .+++-. .-+|...+++.++.++..+...+.+|+.
T Consensus 19 ~V~nLp~~---~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i 84 (102)
T 1wez_A 19 HMRGLPYR---ATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYV 84 (102)
T ss_dssp EEESCCTT---CCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCC
T ss_pred EEeCCCCC---CCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEE
Confidence 46666543 2246678888899955 666531 2456778999999999877777888864
No 223
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=50.01 E-value=34 Score=23.02 Aligned_cols=59 Identities=14% Similarity=0.213 Sum_probs=42.0
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCCc---------CEEEeccHHHHHHHHH-hCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQV---------PAIIVSSPQVAKEVMK-THDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~---------~~vvv~~~~~ike~l~-~~~~~f~~Rp~ 67 (221)
++|||..- -....+.++.++||+|..+++-.. -.|-..+++.++.++. -++..+.+|+.
T Consensus 6 ~v~nlp~~---~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l 74 (167)
T 1fxl_A 6 IVNYLPQN---MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 74 (167)
T ss_dssp EEESCCTT---CCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred EEcCCCCC---CCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceE
Confidence 56766542 224678899999999988877432 3677789999999996 35666666653
No 224
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=49.60 E-value=32 Score=22.36 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=32.6
Q ss_pred HHHHHHhhcCCceEEEcCC-----cCEEEeccHHHHHHHHH-hCCCccCCCCC
Q 048376 21 RLRDLTNKYGPLMLLQLGQ-----VPAIIVSSPQVAKEVMK-THDVVFASRPH 67 (221)
Q Consensus 21 ~~~~~~~~YG~i~~l~~g~-----~~~vvv~~~~~ike~l~-~~~~~f~~Rp~ 67 (221)
.+.+...+||.|..+++-. .-.|-..+++.+..++. =++..|.+|+.
T Consensus 33 dl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 33 DVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp HHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred HHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 4455667999999988732 23555568888877774 36677888864
No 225
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=49.51 E-value=30 Score=23.43 Aligned_cols=57 Identities=25% Similarity=0.390 Sum_probs=40.6
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHhCCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKTHDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~~~~~f~~Rp 66 (221)
++|||..- -....+.++.++||+|..+++-. .-.|...+++.+++++.+ ...+.+|+
T Consensus 7 ~v~nLp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~ 72 (167)
T 2cjk_A 7 FIGGLNWD---TTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKV 72 (167)
T ss_dssp EECSCCTT---CCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEE
T ss_pred EEeCCCCC---CCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeE
Confidence 56776542 23467889999999999998743 335777899999999974 34555554
No 226
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=49.19 E-value=30 Score=24.90 Aligned_cols=59 Identities=14% Similarity=0.263 Sum_probs=40.2
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC-------cCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ-------VPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~-------~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
++|||..- -....+.++..+||+|..+.+-. .-+|-..+.+.+..++.+ ++..+.+|+.
T Consensus 107 ~v~nl~~~---~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i 173 (213)
T 4f02_A 107 FIKNLDKS---IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 173 (213)
T ss_dssp EEESCCTT---CCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred eECCcccc---cHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEE
Confidence 45665442 22467888999999998887621 236677799999999864 5555666553
No 227
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=49.01 E-value=35 Score=24.63 Aligned_cols=60 Identities=7% Similarity=0.112 Sum_probs=42.9
Q ss_pred ccccccc-ccCCCCccHHHHHHHhhcCCceEEEcC----CcCEEEeccHHHHHHHHH-hCCCccCCCCC
Q 048376 5 PLIGNLH-QLAGSLPHHRLRDLTNKYGPLMLLQLG----QVPAIIVSSPQVAKEVMK-THDVVFASRPH 67 (221)
Q Consensus 5 PiiGnl~-~l~~~~~~~~~~~~~~~YG~i~~l~~g----~~~~vvv~~~~~ike~l~-~~~~~f~~Rp~ 67 (221)
-++|||. .- -....+.++-.+||+|..+++- +.-.|...+++.|..++. -++..+.+|+.
T Consensus 7 l~V~nL~~~~---~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 72 (205)
T 3tyt_A 7 LMVYGLDQSK---MNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKM 72 (205)
T ss_dssp EEEECCCTTT---CCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred EEEeCCCccc---CCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceE
Confidence 4678886 32 1235788899999999999874 345677789999988885 35566666653
No 228
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.00 E-value=18 Score=23.96 Aligned_cols=57 Identities=11% Similarity=0.195 Sum_probs=37.4
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCc----eEEEc-----C---CcCEEEeccHHHHHHHHHhCCCccCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPL----MLLQL-----G---QVPAIIVSSPQVAKEVMKTHDVVFASR 65 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i----~~l~~-----g---~~~~vvv~~~~~ike~l~~~~~~f~~R 65 (221)
++|||..- -....+.++.++||+| -.+++ | +.-+|...+++.++.++.+++..+.+|
T Consensus 27 ~V~nLp~~---~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR 95 (123)
T 2dha_A 27 RMRGLPFT---ATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKR 95 (123)
T ss_dssp EECSCCTT---CCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSC
T ss_pred EEeCCCCC---CCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCe
Confidence 46666542 2246788999999975 23333 1 124677889999999998765555555
No 229
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.14 E-value=27 Score=20.66 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=34.0
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHH
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMK 56 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~ 56 (221)
++|||..- -....+.++..+||+|..+.+-. .-.|...+++.++.++.
T Consensus 9 ~v~nlp~~---~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (85)
T 1x4e_A 9 YIRGLQPG---TTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT 65 (85)
T ss_dssp EEESCCTT---CCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 57776543 22466788889999998887632 23566779999988885
No 230
>1b35_D CRPV, protein (cricket paralysis virus, VP4); insect picorna-like virus, icosahedral virus; 2.40A {Cricket paralysis virus} SCOP: b.121.4.1
Probab=47.73 E-value=8.8 Score=20.93 Aligned_cols=26 Identities=23% Similarity=0.574 Sum_probs=14.5
Q ss_pred CcccccccccCCCCccHHHHHHHhhcC
Q 048376 4 LPLIGNLHQLAGSLPHHRLRDLTNKYG 30 (221)
Q Consensus 4 ~PiiGnl~~l~~~~~~~~~~~~~~~YG 30 (221)
.|++||++.-| .-.......++|-+|
T Consensus 31 ipilgn~fs~p-awisa~~~~~~k~~g 56 (57)
T 1b35_D 31 IPVLGNIFSTP-AWISAKAADLAKLFG 56 (57)
T ss_dssp CCCSCCSSSSC-TTCCCCHHHHHHHTT
T ss_pred cccccccccch-HHHHHHHHHHHHHhC
Confidence 79999988753 211223445555444
No 231
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=47.08 E-value=12 Score=24.34 Aligned_cols=58 Identities=9% Similarity=0.004 Sum_probs=40.0
Q ss_pred ccccccccCCCCccHHHHHHHhhcCC---ceEEEcC--------CcCEEEeccHHHHHHHHHhCCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGP---LMLLQLG--------QVPAIIVSSPQVAKEVMKTHDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~---i~~l~~g--------~~~~vvv~~~~~ike~l~~~~~~f~~Rp 66 (221)
++|||..- -....+.++.++||. |..+++- +.-+|...+.+.++.++..++..+.+|+
T Consensus 21 ~V~nLp~~---~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~ 89 (118)
T 2db1_A 21 KLRGLPWS---CSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRY 89 (118)
T ss_dssp EEESCCTT---CCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEE
T ss_pred EEeCCCCC---CCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeE
Confidence 46666553 123568888899998 6665542 1346778899999999987666666664
No 232
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.48 E-value=33 Score=20.55 Aligned_cols=47 Identities=17% Similarity=0.365 Sum_probs=34.5
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC----CcCEEEeccHHHHHHHH
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG----QVPAIIVSSPQVAKEVM 55 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g----~~~~vvv~~~~~ike~l 55 (221)
++|||..- -....+.++-.+||+|..+++- +.-+|...+.+.++++.
T Consensus 9 ~V~nLp~~---~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~ 59 (88)
T 1wf0_A 9 FVGRCTGD---MTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLC 59 (88)
T ss_dssp EEESCCSS---SCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTT
T ss_pred EEeCCCCC---CCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHh
Confidence 57777543 2246788899999999999884 34577778999987653
No 233
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=46.28 E-value=42 Score=22.17 Aligned_cols=55 Identities=13% Similarity=0.033 Sum_probs=37.7
Q ss_pred cccccccCCCCccHHHHHHHhhcCCceEEEcC----CcCEEEeccHHHHHHHHHh-CCCccCC
Q 048376 7 IGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG----QVPAIIVSSPQVAKEVMKT-HDVVFAS 64 (221)
Q Consensus 7 iGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g----~~~~vvv~~~~~ike~l~~-~~~~f~~ 64 (221)
+|||..- -....+.++..+||.|-.+++. .+-+|...+.+.|.+++.. ++..+.+
T Consensus 30 V~NL~~~---vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g 89 (124)
T 2e5i_A 30 IQNPLYP---ITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYA 89 (124)
T ss_dssp EESCCSC---CCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBT
T ss_pred EcCcCCC---CCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 6776542 1246789999999998877653 2466777788888777753 5555555
No 234
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.05 E-value=27 Score=21.20 Aligned_cols=59 Identities=19% Similarity=0.121 Sum_probs=37.9
Q ss_pred ccccccccCCCCccHHHHHHHhhcCC-ceEEEcCCc--CEEEeccHHHHHHHHH-hCC-CccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGP-LMLLQLGQV--PAIIVSSPQVAKEVMK-THD-VVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~-i~~l~~g~~--~~vvv~~~~~ike~l~-~~~-~~f~~Rp~ 67 (221)
++|||..- -....+.++..+||+ |-...+-++ -+|-..+.+.+..++. -++ ..+.+|+.
T Consensus 12 ~V~nLp~~---~t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l 75 (93)
T 2cqh_A 12 YIGNLSPA---VTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIM 75 (93)
T ss_dssp EEECCCTT---CCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTTCEETTEEC
T ss_pred EEeCCCCC---CCHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHccCCeeECCEEE
Confidence 57777553 224678889999998 544444333 3455568999988886 344 55666653
No 235
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=45.79 E-value=39 Score=22.67 Aligned_cols=56 Identities=13% Similarity=0.158 Sum_probs=37.9
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC-----cCEEEeccHHHHHHHHH-hCCCccCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ-----VPAIIVSSPQVAKEVMK-THDVVFAS 64 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~-----~~~vvv~~~~~ike~l~-~~~~~f~~ 64 (221)
++|||..- -....+.++..+||.|-.+++.. +-+|...+++.++.++. -++..+.+
T Consensus 32 ~V~NL~~~---vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g 93 (130)
T 3zzy_A 32 IVENLFYP---VTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN 93 (130)
T ss_dssp EEESCCSC---CCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEET
T ss_pred EECCCCCC---CCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecC
Confidence 37777431 12467889999999998887743 35777788888877774 24444544
No 236
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=44.38 E-value=51 Score=19.92 Aligned_cols=46 Identities=13% Similarity=0.310 Sum_probs=33.4
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC----CcCEEEeccHHHHHHH
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG----QVPAIIVSSPQVAKEV 54 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g----~~~~vvv~~~~~ike~ 54 (221)
++|||..- -....+.+...+||+|..+++- +.-+|...+++.|+++
T Consensus 15 ~V~~Lp~~---~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 15 FVGRCTED---MTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp EEESCCTT---CCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHH
Confidence 56776553 2246788899999999999885 3456777899988853
No 237
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=43.10 E-value=20 Score=22.98 Aligned_cols=55 Identities=11% Similarity=0.199 Sum_probs=37.6
Q ss_pred ccCCCCccHHHHHHHhhcCCceEEEcCCcC-EEEeccHHHHHHHHH--hCCCccCCCC
Q 048376 12 QLAGSLPHHRLRDLTNKYGPLMLLQLGQVP-AIIVSSPQVAKEVMK--THDVVFASRP 66 (221)
Q Consensus 12 ~l~~~~~~~~~~~~~~~YG~i~~l~~g~~~-~vvv~~~~~ike~l~--~~~~~f~~Rp 66 (221)
.+|..--..-+.++-..||.+.-=|+...- .|++++++.|++++. +....|.-|+
T Consensus 12 ~FP~ewKt~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~~~~~y~i~t 69 (101)
T 3ctr_A 12 TFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNTSKYAESYRIQT 69 (101)
T ss_dssp ECCTTCCHHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHHHTTCSSCCCCC
T ss_pred eCChhhhhHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcccCCceEEEE
Confidence 343333346788899999977777887554 567789999999996 3344455544
No 238
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=43.05 E-value=16 Score=24.68 Aligned_cols=58 Identities=9% Similarity=-0.007 Sum_probs=39.2
Q ss_pred ccccccccCCCCccHHHHHHHhhcCC---ceEEEcC--------CcCEEEeccHHHHHHHHHhCCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGP---LMLLQLG--------QVPAIIVSSPQVAKEVMKTHDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~---i~~l~~g--------~~~~vvv~~~~~ike~l~~~~~~f~~Rp 66 (221)
++|||..- -....+.++.++||. |..+++- +.-+|...+++.++.++..++..+.+|+
T Consensus 48 fVgnLp~~---~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~ 116 (136)
T 2hgl_A 48 KLRGLPWS---CSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRY 116 (136)
T ss_dssp EEESCCTT---CCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSE
T ss_pred EEeCCCCC---CCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEE
Confidence 46666543 224678889999998 5555442 1346778899999999976665666664
No 239
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=42.78 E-value=46 Score=20.99 Aligned_cols=58 Identities=16% Similarity=0.271 Sum_probs=38.3
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC--------cCEEEeccHHHHHHHHH-hCCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ--------VPAIIVSSPQVAKEVMK-THDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~--------~~~vvv~~~~~ike~l~-~~~~~f~~Rp 66 (221)
+||||..- -....+.++..+||+|..+++-. .-+|...+++.+..++. =++..+.+++
T Consensus 29 ~V~nlp~~---~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~ 95 (114)
T 1x5o_A 29 YISNLPLS---MDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPP 95 (114)
T ss_dssp EEESCCTT---CCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCT
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCc
Confidence 46666442 22466888889999998887732 24566679999998886 3444454443
No 240
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=42.75 E-value=25 Score=24.63 Aligned_cols=58 Identities=17% Similarity=0.344 Sum_probs=38.4
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCCc---------CEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQV---------PAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~---------~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
++|||..- -....+.++..+||+|..+.+-.. -+|-..+++.+..++.. ++..+.+|+
T Consensus 118 ~v~nl~~~---~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 185 (198)
T 2yh0_A 118 FIGGLPNY---LNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK 185 (198)
T ss_dssp EEECCCTT---CCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCCC---CCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 35555432 224678888899999988876432 24666788888888864 555666655
No 241
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=41.73 E-value=41 Score=22.26 Aligned_cols=58 Identities=10% Similarity=0.088 Sum_probs=40.3
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCce--EEEcC--------CcCEEEeccHHHHHHHHHhCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLM--LLQLG--------QVPAIIVSSPQVAKEVMKTHDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~--~l~~g--------~~~~vvv~~~~~ike~l~~~~~~f~~Rp~ 67 (221)
++|||..- -....+.++.++| .|. .+.+. +.-+|...+++.++.++......+.+|+.
T Consensus 46 fVgnLp~~---~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I 113 (126)
T 2hgm_A 46 RLRGLPFG---CTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYI 113 (126)
T ss_dssp EEECCCTT---CCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCC
T ss_pred EEeCCCCC---CCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEE
Confidence 56666543 2246688888889 566 66653 23467888999999999877666777763
No 242
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=41.52 E-value=72 Score=20.81 Aligned_cols=58 Identities=12% Similarity=0.182 Sum_probs=36.4
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceE--EEcCC---------cCEEEeccHHHHHHHHH-hCCC----ccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLML--LQLGQ---------VPAIIVSSPQVAKEVMK-THDV----VFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~--l~~g~---------~~~vvv~~~~~ike~l~-~~~~----~f~~Rp~ 67 (221)
+||||..- . ....+.++..+||+|.. +++-. .-+|-..++ .+..++. -++. .+.+|+.
T Consensus 27 fV~nL~~~-~--te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l 100 (131)
T 2m2b_A 27 ILRNLNPH-S--TMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTI 100 (131)
T ss_dssp EECSCCTT-C--CSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCC
T ss_pred EEeCCCCC-C--CHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEE
Confidence 57777553 1 24678899999999854 55432 235666677 6655554 3454 6777764
No 243
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=39.86 E-value=83 Score=21.05 Aligned_cols=46 Identities=15% Similarity=0.258 Sum_probs=32.9
Q ss_pred cHHHHHHHhhcCCceEEEcCCcC---------EEEeccHHHHHHHHH-hCCCccCC
Q 048376 19 HHRLRDLTNKYGPLMLLQLGQVP---------AIIVSSPQVAKEVMK-THDVVFAS 64 (221)
Q Consensus 19 ~~~~~~~~~~YG~i~~l~~g~~~---------~vvv~~~~~ike~l~-~~~~~f~~ 64 (221)
...+.++.++||+|..+.+-..+ .|-..+++.+..++. -++..+.+
T Consensus 103 ~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 103 DDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp HHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred HHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 46788888999999888764322 566679999988886 34444544
No 244
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=39.67 E-value=71 Score=20.20 Aligned_cols=50 Identities=12% Similarity=0.129 Sum_probs=36.5
Q ss_pred CcccccccccCCCCccHHHHHHHhhcCCceEEEcC---CcCEEEeccHHHHHHHHH
Q 048376 4 LPLIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG---QVPAIIVSSPQVAKEVMK 56 (221)
Q Consensus 4 ~PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g---~~~~vvv~~~~~ike~l~ 56 (221)
.-++|||..- -....+.++..+||+|..+.+- +.-+|-..+.+.|+.++.
T Consensus 23 ~l~V~NLp~~---~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~ 75 (100)
T 3r27_A 23 VVHIRGLIDG---VVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVN 75 (100)
T ss_dssp EEEEESCCTT---CCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCCC---CCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 3457777642 1236788999999999888763 456677779999988885
No 245
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.59 E-value=77 Score=20.59 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=35.6
Q ss_pred ccc--ccccccCCCCccHHHHHHHhhcCCceEEEcCC---cCEEEeccHHHHHHHHHh
Q 048376 5 PLI--GNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---VPAIIVSSPQVAKEVMKT 57 (221)
Q Consensus 5 Pii--Gnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---~~~vvv~~~~~ike~l~~ 57 (221)
-++ |||..- -....+.+.-.+||.|-.+++.. .-+|-..+++.|++++..
T Consensus 28 L~V~Ng~L~~~---~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~ 82 (114)
T 2cq2_A 28 LVVANGGLGNG---VSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVT 82 (114)
T ss_dssp EEEETCTGGGT---CCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHH
T ss_pred EEEECCCCCCC---CCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 356 656542 12467889999999999988742 345666799999888863
No 246
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.29 E-value=38 Score=21.42 Aligned_cols=47 Identities=15% Similarity=0.290 Sum_probs=35.7
Q ss_pred HHHHHHHhhcCCceEEEc-CCcCEEEeccHHHHHHHHHhCCCccCCCC
Q 048376 20 HRLRDLTNKYGPLMLLQL-GQVPAIIVSSPQVAKEVMKTHDVVFASRP 66 (221)
Q Consensus 20 ~~~~~~~~~YG~i~~l~~-g~~~~vvv~~~~~ike~l~~~~~~f~~Rp 66 (221)
..+.+.-.+||.|..+++ ..+-+|...|.+.|..++..++-.+.+|.
T Consensus 39 ~~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~sAl~AI~ldG~~v~Gr~ 86 (95)
T 1ufw_A 39 TELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLDVDGMKVKGRA 86 (95)
T ss_dssp HHHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHHGGGSEETTEE
T ss_pred HHHHHHHHHCCCEEEEEEecCcEEEEEcChHHHHHHHhcCCeeeCCeE
Confidence 345666777999888885 56667777899999888887776666664
No 247
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=39.19 E-value=67 Score=20.48 Aligned_cols=47 Identities=11% Similarity=0.219 Sum_probs=34.2
Q ss_pred cHHHHHHHhhcCCceEEEcCCcC-EEEeccHHHHHHHHH--hCCCccCCC
Q 048376 19 HHRLRDLTNKYGPLMLLQLGQVP-AIIVSSPQVAKEVMK--THDVVFASR 65 (221)
Q Consensus 19 ~~~~~~~~~~YG~i~~l~~g~~~-~vvv~~~~~ike~l~--~~~~~f~~R 65 (221)
..-+.++-+.||.|.-=|+...- .|++++++.|++++. ++...|.-|
T Consensus 29 t~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~k~~~y~i~ 78 (100)
T 1whv_A 29 TSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSKYAESYRIQ 78 (100)
T ss_dssp HHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHHHHHHCCSSEEE
T ss_pred hHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcccCCceEEE
Confidence 46788899999988777887554 566789999999996 333344333
No 248
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.82 E-value=42 Score=21.49 Aligned_cols=57 Identities=16% Similarity=0.127 Sum_probs=39.5
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC--------CcCEEEeccHHHHHHHHHhCCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG--------QVPAIIVSSPQVAKEVMKTHDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g--------~~~~vvv~~~~~ike~l~~~~~~f~~Rp 66 (221)
++|||..- -....+.++-+.| .|..+.+. +.-+|...+++.++.++..++..+.+|+
T Consensus 20 ~V~nLp~~---~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 84 (109)
T 2dnn_A 20 SVHGMPFS---AMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRY 84 (109)
T ss_dssp EEECCCSS---CCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEE
T ss_pred EEeCCCCC---CCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeE
Confidence 45666543 2246678888889 67777663 2347778899999999977666666664
No 249
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=38.30 E-value=58 Score=23.33 Aligned_cols=58 Identities=19% Similarity=0.347 Sum_probs=41.3
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
+||||..- -....+.++.++||+|..+++-. .-.|...+++.+..++.. ++..+.+|+
T Consensus 19 fVgnLp~~---~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~ 86 (213)
T 4f02_A 19 YVGDLHPD---VTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 86 (213)
T ss_dssp EEESCCTT---CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCCC---CCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcc
Confidence 67887543 22467889999999999887632 236778899999998853 455566664
No 250
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=38.25 E-value=40 Score=25.16 Aligned_cols=86 Identities=16% Similarity=0.141 Sum_probs=53.4
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC---CcCEEEeccHHHHHHHHH-hCCCccCCCCCCchhhhhhcCCCce
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG---QVPAIIVSSPQVAKEVMK-THDVVFASRPHFPPAQIISYNYRDI 81 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g---~~~~vvv~~~~~ike~l~-~~~~~f~~Rp~~~~~~~~~~~~~~~ 81 (221)
++|||..- -....+.++..+||+|..+.++ +.-+|-..+++.|..++. -++..+.+|+..... ...+..+
T Consensus 26 ~V~nLp~~---~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~---a~~~~~l 99 (261)
T 3sde_A 26 FVGNLPTD---ITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF---ATHGAAL 99 (261)
T ss_dssp EEESCCTT---CCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE---CCCSSEE
T ss_pred EEECCCCC---CCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee---cccCCcc
Confidence 56766542 2246788889999999999886 234566679999999886 456667777642111 1111222
Q ss_pred ee--CCCChHHHHHHHHH
Q 048376 82 VF--SPYGDSWKQLRKIC 97 (221)
Q Consensus 82 ~~--~~~g~~Wk~~Rr~~ 97 (221)
.. .++.-++..++.+.
T Consensus 100 ~v~nl~~~~t~~~l~~~F 117 (261)
T 3sde_A 100 TVKNLSPVVSNELLEQAF 117 (261)
T ss_dssp EEESCCTTCCHHHHHHHH
T ss_pred cccCCCCCCCHHHHHHHH
Confidence 11 23455677777775
No 251
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.69 E-value=36 Score=20.47 Aligned_cols=57 Identities=7% Similarity=0.056 Sum_probs=38.7
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC--------cCEEEeccHHHHHHHHHhCCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ--------VPAIIVSSPQVAKEVMKTHDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~--------~~~vvv~~~~~ike~l~~~~~~f~~Rp 66 (221)
++|||..- -....+.++..+| +|..+.+-. .-.|...+++.++.++.-++..+.+|+
T Consensus 14 ~v~nLp~~---~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~ 78 (91)
T 2dgw_A 14 KLRGAPFN---VTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRY 78 (91)
T ss_dssp EEECCCSS---CCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEE
T ss_pred EEECCCCC---CCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcE
Confidence 46666542 2245678888888 777776521 345667899999999986666666664
No 252
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=37.17 E-value=77 Score=21.22 Aligned_cols=59 Identities=14% Similarity=0.204 Sum_probs=42.1
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHHH-hCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVMK-THDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l~-~~~~~f~~Rp~ 67 (221)
++|||..- -....+.++.++||+|..+++-. .-.|-..+++.++.++. -++..+.+|+.
T Consensus 7 ~v~nlp~~---~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l 75 (168)
T 1b7f_A 7 IVNYLPQD---MTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRL 75 (168)
T ss_dssp EEECCCTT---CCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEE
Confidence 56776542 22467889999999999888743 34666779999999985 45666666653
No 253
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=36.93 E-value=53 Score=22.24 Aligned_cols=59 Identities=17% Similarity=0.341 Sum_probs=40.1
Q ss_pred ccccccccCCCCccHHHHHHHhhc----C-------CceEEEcC---CcCEEEeccHHHHHHHHHhCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKY----G-------PLMLLQLG---QVPAIIVSSPQVAKEVMKTHDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~Y----G-------~i~~l~~g---~~~~vvv~~~~~ike~l~~~~~~f~~Rp~ 67 (221)
++|||..- -....+.++-++| | +|...+.+ +.-.|-..+++.|+.++.-++..+.+|+.
T Consensus 8 ~V~nLp~~---~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i 80 (172)
T 2g4b_A 8 YVGNIPFG---ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSL 80 (172)
T ss_dssp EEESCCTT---CCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEEC
T ss_pred EEcCCCcc---cCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCcee
Confidence 46776543 2235566677777 7 78877775 34466677999999999666667777753
No 254
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.24 E-value=23 Score=21.91 Aligned_cols=58 Identities=21% Similarity=0.189 Sum_probs=37.2
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEc--C---CcCEEEeccHHHHHHHHH-hCCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQL--G---QVPAIIVSSPQVAKEVMK-THDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~--g---~~~~vvv~~~~~ike~l~-~~~~~f~~Rp 66 (221)
+||||..- -....+.++..+||+|..... | +.-+|...+++.++.++. -++..+.+|+
T Consensus 19 ~V~nLp~~---~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 82 (101)
T 2fc9_A 19 VLSNLSYS---ATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRA 82 (101)
T ss_dssp EEESCCTT---CCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEE
T ss_pred EEeCCCCC---CCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeE
Confidence 46766543 224667888889998844332 1 233566779999999987 3455566655
No 255
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.54 E-value=20 Score=23.42 Aligned_cols=58 Identities=12% Similarity=0.084 Sum_probs=37.6
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCce---EEEc---C---CcCEEEeccHHHHHHHHHhCCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLM---LLQL---G---QVPAIIVSSPQVAKEVMKTHDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~---~l~~---g---~~~~vvv~~~~~ike~l~~~~~~f~~Rp 66 (221)
++|||..- -....+.++..+||+|. .+.. | +.-+|...+.+.++.++..++..+.+|+
T Consensus 29 ~V~nLp~~---~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~ 95 (124)
T 1wel_A 29 YLKGLPFE---AENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRF 95 (124)
T ss_dssp EEECCCTT---CCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcE
Confidence 46776543 22466888889999863 2321 1 2346777899999999976666666664
No 256
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.35 E-value=48 Score=21.02 Aligned_cols=48 Identities=25% Similarity=0.308 Sum_probs=33.6
Q ss_pred HHHHHHHhhcCCceEEEcC-----CcCEEEeccHHHHHHHHHh-CCCccCCCCC
Q 048376 20 HRLRDLTNKYGPLMLLQLG-----QVPAIIVSSPQVAKEVMKT-HDVVFASRPH 67 (221)
Q Consensus 20 ~~~~~~~~~YG~i~~l~~g-----~~~~vvv~~~~~ike~l~~-~~~~f~~Rp~ 67 (221)
..+.+...+||+|..+.+- +.-+|...+.+.+..++.. ++..|.+|+.
T Consensus 41 ~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 94 (112)
T 2dit_A 41 EDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQI 94 (112)
T ss_dssp HHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEEC
T ss_pred HHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 4667788899999888763 2335556688888888853 5556777764
No 257
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=32.24 E-value=50 Score=22.38 Aligned_cols=58 Identities=17% Similarity=0.344 Sum_probs=38.6
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCCc---------CEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQV---------PAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~~---------~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
++|||..- -....+.+...+||+|..+.+-.. -.|-..+++.+..++.. ++..+.+|+
T Consensus 98 ~v~nlp~~---~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (172)
T 2g4b_A 98 FIGGLPNY---LNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK 165 (172)
T ss_dssp EEECCCTT---CCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEE
T ss_pred EEEcCCCc---CCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeE
Confidence 45665442 224678888899999988876332 34556688888888864 555565554
No 258
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=32.19 E-value=31 Score=21.27 Aligned_cols=59 Identities=12% Similarity=0.071 Sum_probs=37.2
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceE-----EEcC---CcCEEEeccHHHHHHHHHhCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLML-----LQLG---QVPAIIVSSPQVAKEVMKTHDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~-----l~~g---~~~~vvv~~~~~ike~l~~~~~~f~~Rp~ 67 (221)
++|||..- -....+.++..+||+|.. -.-| +.-+|-..+++.++.++.-++..+.+|+.
T Consensus 21 ~V~nLp~~---~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l 87 (101)
T 1fj7_A 21 FIGNLNPN---KSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEI 87 (101)
T ss_dssp EEECCCTT---SCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCC
T ss_pred EEeCCCCC---CCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEE
Confidence 46776543 223567788888886543 1112 23456778999999999756666666653
No 259
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=30.53 E-value=32 Score=26.66 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=21.7
Q ss_pred HHhhcCCceEEEcCCcCEEEeccHHHHHHHHHhCC
Q 048376 25 LTNKYGPLMLLQLGQVPAIIVSSPQVAKEVMKTHD 59 (221)
Q Consensus 25 ~~~~YG~i~~l~~g~~~~vvv~~~~~ike~l~~~~ 59 (221)
++.-|||. +..|||+|++.|++-|+.-.
T Consensus 140 fsAlyGpa-------r~AIVV~Dl~~~~~~L~~l~ 167 (302)
T 3ibp_A 140 FSALYGPS-------RHAIVVPDLSQVTEHLEGLT 167 (302)
T ss_dssp HHHHTGGG-------GSEEECSSCHHHHHHHTTCC
T ss_pred HHHHhccc-------ceeeEeCCHHHHHHHHhhcc
Confidence 44556665 78999999999999996543
No 260
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=29.39 E-value=1.2e+02 Score=19.98 Aligned_cols=48 Identities=17% Similarity=0.165 Sum_probs=34.5
Q ss_pred cHHHHHHHhhcCCceEEEcCCc---------CEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 19 HHRLRDLTNKYGPLMLLQLGQV---------PAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 19 ~~~~~~~~~~YG~i~~l~~g~~---------~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
...+.++..+||+|..+.+-.. -.|-..+++.+..++.. ++..+.+|.
T Consensus 102 ~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 159 (167)
T 1fxl_A 102 QKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 159 (167)
T ss_dssp HHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS
T ss_pred HHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCc
Confidence 4678889999999988876322 25666799999988863 455566654
No 261
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=28.75 E-value=1e+02 Score=22.94 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=33.1
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC----cCEEEeccHHHHHHHHH
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ----VPAIIVSSPQVAKEVMK 56 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~----~~~vvv~~~~~ike~l~ 56 (221)
+||||..- -....+.++..+||+|..+++-. .-+|-..+.+.+..++.
T Consensus 211 ~v~nl~~~---~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~ 262 (282)
T 3pgw_A 211 FLTNLPEE---TNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARD 262 (282)
T ss_pred EEeCCCCc---CCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHH
Confidence 45555432 23467888889999998887742 34555568888888886
No 262
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=27.65 E-value=55 Score=19.82 Aligned_cols=58 Identities=16% Similarity=0.131 Sum_probs=38.7
Q ss_pred ccccccccCCCCccHHHHHHHhhcC-CceEEEcCC---------cCEEEeccHHHHHHHHHhC--CCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYG-PLMLLQLGQ---------VPAIIVSSPQVAKEVMKTH--DVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG-~i~~l~~g~---------~~~vvv~~~~~ike~l~~~--~~~f~~Rp 66 (221)
+||||..- -....+.++-++|| +|-.+++.. .-.|-..+++.|+.++... +-.+.+|+
T Consensus 5 ~v~nLp~~---~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~ 74 (91)
T 2lxi_A 5 MLRMLPQA---ATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQK 74 (91)
T ss_dssp EEETCCSS---CCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEE
T ss_pred EEeCCCCC---CCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEE
Confidence 45666543 22467888999999 788777632 1357778999999998642 23455665
No 263
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=27.57 E-value=35 Score=20.67 Aligned_cols=58 Identities=14% Similarity=0.049 Sum_probs=37.0
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC---------CcCEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG---------QVPAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g---------~~~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
++|||..- -....+.++.++||+|....+- +.-+|-..+++.++.++.. ++..+.+|+
T Consensus 19 ~V~nlp~~---~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 86 (95)
T 2ek1_A 19 KVQNMPFT---VSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (95)
T ss_dssp EEECCCTT---CCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence 46666432 2246788889999986432221 1245667799999999864 555666665
No 264
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.24 E-value=31 Score=21.13 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=36.2
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceE---EEc---C---CcCEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLML---LQL---G---QVPAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~---l~~---g---~~~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
++|||..- -....+.++..+||+|.. +.- | +.-+|...+++.++.++.. ++..+.+|+
T Consensus 19 ~v~nLp~~---~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 86 (98)
T 2cqp_A 19 KVQNMPFT---VSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (98)
T ss_dssp EEESCCTT---CCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEE
T ss_pred EEeCCCCC---CCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 46666432 234678889999998742 211 1 2245667899999999853 444566665
No 265
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=26.73 E-value=82 Score=19.40 Aligned_cols=48 Identities=13% Similarity=0.176 Sum_probs=32.9
Q ss_pred ccccccccCCCCccHHHHHHHhhcCC--ceEEEcCC---------cCEEEeccHHHHHHHHH
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGP--LMLLQLGQ---------VPAIIVSSPQVAKEVMK 56 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~--i~~l~~g~---------~~~vvv~~~~~ike~l~ 56 (221)
+||||..- -....+.+.-++||+ +..+++-. .-+|-..+++.+.+++.
T Consensus 13 fV~nL~~~---~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~ 71 (95)
T 2lkz_A 13 ILRNIAPH---TVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQ 71 (95)
T ss_dssp EEESCCTT---CCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHH
T ss_pred EEeCCCCc---CCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHH
Confidence 46766553 224678899999995 55666532 22677778998888885
No 266
>2wmm_A Chromosome partition protein MUKB; cell division, DNA condensation, nucleotide-binding, cell cycle, coiled coil, ATP-binding, DNA-binding, SMC; 2.30A {Escherichia coli}
Probab=26.73 E-value=17 Score=25.17 Aligned_cols=19 Identities=21% Similarity=0.176 Sum_probs=17.0
Q ss_pred cCEEEeccHHHHHHHHHhC
Q 048376 40 VPAIIVSSPQVAKEVMKTH 58 (221)
Q Consensus 40 ~~~vvv~~~~~ike~l~~~ 58 (221)
+..|||+|++.|++-|..-
T Consensus 67 rhAIVV~Dl~~~~~~L~~l 85 (162)
T 2wmm_A 67 RHAIVVPDLSQVTEHLEGL 85 (162)
T ss_dssp GGCEEESCGGGTHHHHTTC
T ss_pred ceeeEeCCHHHHHHHHhcc
Confidence 7899999999999999863
No 267
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=26.68 E-value=70 Score=21.17 Aligned_cols=59 Identities=17% Similarity=0.288 Sum_probs=38.8
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceE--------E---EcC---CcCEEEeccHHHHHHHHH-hCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLML--------L---QLG---QVPAIIVSSPQVAKEVMK-THDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~--------l---~~g---~~~~vvv~~~~~ike~l~-~~~~~f~~Rp~ 67 (221)
+||||..- -....+.++..+||.|.. + .-| +.-+|...+++.|..++. -++..+.+|+.
T Consensus 49 ~V~nLp~~---~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 49 YVKNLAKH---VQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp EEEEECTT---CCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred EEeCCCCC---CCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 57777542 224678889999998743 2 222 234666779999988886 35666767664
No 268
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=25.40 E-value=35 Score=20.72 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=37.2
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC----CcCEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG----QVPAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g----~~~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
++|||..- -....+.++..+||+|..+... +.-+|-..+++.++.++.. ++..+.+|+
T Consensus 20 ~V~nL~~~---~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 82 (96)
T 1fjc_A 20 LAKNLSFN---ITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 82 (96)
T ss_dssp EEESCCSS---CCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEE
T ss_pred EEeCCCCC---CCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 46766542 2246688888899987655221 2345667799999999873 444555554
No 269
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.57 E-value=1.4e+02 Score=18.80 Aligned_cols=49 Identities=10% Similarity=0.268 Sum_probs=32.6
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcC-----------CcCEEEeccHHHHHHHHHh
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLG-----------QVPAIIVSSPQVAKEVMKT 57 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g-----------~~~~vvv~~~~~ike~l~~ 57 (221)
++|||..- -....+.++..+||+|....+- +.-+|...+++.|+.++..
T Consensus 12 fVgnLp~~---~te~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~ 71 (114)
T 2dnl_A 12 FVGGLPPD---IDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDA 71 (114)
T ss_dssp EEECCCTT---CCHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHH
T ss_pred EEcCCCCC---CCHHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHh
Confidence 57777543 2246788899999998732221 1235666799999988864
No 270
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=23.13 E-value=1.9e+02 Score=19.96 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=38.1
Q ss_pred cccccccCCCCccHHHHHHHhhcC-CceEEEcC----CcCEEEeccHHHHHHHHH-hCCCccC-CCC
Q 048376 7 IGNLHQLAGSLPHHRLRDLTNKYG-PLMLLQLG----QVPAIIVSSPQVAKEVMK-THDVVFA-SRP 66 (221)
Q Consensus 7 iGnl~~l~~~~~~~~~~~~~~~YG-~i~~l~~g----~~~~vvv~~~~~ike~l~-~~~~~f~-~Rp 66 (221)
+|||..- -....+.+...+|| +|..+.+- +.-.|-..+.+.+..++. -++..+. +|+
T Consensus 125 v~nl~~~---~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 188 (198)
T 1qm9_A 125 LSNIPPS---VSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHH 188 (198)
T ss_dssp ECCCCTT---CCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCS
T ss_pred EeCCCCC---CCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCe
Confidence 5555432 23467888999999 89888872 234566679999988886 3444555 555
No 271
>1m1f_A KID toxin protein; toxin-antitoxin, plasmid maintenance, post segregational killing, DNA replication, mutational analysis, CCDB; 1.40A {Escherichia coli} SCOP: b.34.6.2 PDB: 2c06_A
Probab=23.01 E-value=42 Score=21.38 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=15.7
Q ss_pred CCceEEEcC---------CcCEEEeccHHH
Q 048376 30 GPLMLLQLG---------QVPAIIVSSPQV 50 (221)
Q Consensus 30 G~i~~l~~g---------~~~~vvv~~~~~ 50 (221)
|+|+.+.++ .+|+|||++...
T Consensus 4 GdI~~v~~~p~~g~E~~k~RP~lVvs~~~~ 33 (110)
T 1m1f_A 4 GEIWLVSLDPTAGHEQQGTRPVLIVTPAAF 33 (110)
T ss_dssp TEEEEEECCSCCTTSCCSEEEEEECSCHHH
T ss_pred cEEEEEECCCCCCcccCCcccEEEEecccc
Confidence 777777773 489999997643
No 272
>3qf7_D MRE11; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima}
Probab=22.32 E-value=78 Score=16.54 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 048376 180 KLHQEADRIVKNIINEHKKR 199 (221)
Q Consensus 180 ~~~~~~~~~~~~~i~~~~~~ 199 (221)
+....+.+++++++++.+++
T Consensus 22 ~~he~l~k~~~ell~evkks 41 (50)
T 3qf7_D 22 ENHEKLLKILDELLDEVKKS 41 (50)
T ss_dssp TTHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHh
Confidence 45667788888888888875
No 273
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=27.11 E-value=20 Score=23.03 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=36.4
Q ss_pred cccccccccCCCCccHHHHHHHhhcCCceE--------EEcCC---------cCEEEeccHHHHHHHHHh-CCCccCCCC
Q 048376 5 PLIGNLHQLAGSLPHHRLRDLTNKYGPLML--------LQLGQ---------VPAIIVSSPQVAKEVMKT-HDVVFASRP 66 (221)
Q Consensus 5 PiiGnl~~l~~~~~~~~~~~~~~~YG~i~~--------l~~g~---------~~~vvv~~~~~ike~l~~-~~~~f~~Rp 66 (221)
-+||||..- . ....+.++..+||+|.. +++-. .-+|...+++.|+.++.. ++..+.+|+
T Consensus 10 l~V~nLp~~-~--t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (116)
T 2lcw_A 10 IFVQGLGEN-V--TIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNP 86 (116)
Confidence 357777543 1 12456778889998866 44321 234556677888777763 555666766
Q ss_pred C
Q 048376 67 H 67 (221)
Q Consensus 67 ~ 67 (221)
.
T Consensus 87 l 87 (116)
T 2lcw_A 87 I 87 (116)
Confidence 4
No 274
>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii}
Probab=21.42 E-value=1.1e+02 Score=23.27 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=29.5
Q ss_pred HHHHHHHhhcCCceEEEcCCcCEEEecc---HHHHHHHHH
Q 048376 20 HRLRDLTNKYGPLMLLQLGQVPAIIVSS---PQVAKEVMK 56 (221)
Q Consensus 20 ~~~~~~~~~YG~i~~l~~g~~~~vvv~~---~~~ike~l~ 56 (221)
..+.++.+++|.+ .+++|+...++++. +..+.+++.
T Consensus 164 ~~Ll~y~~~igG~-lf~iGgdny~iftt~~~rg~ie~~i~ 202 (268)
T 2qv6_A 164 LALMEELLKYNAL-LFFIGGDNFMAPSNGMSEEDFLDIFN 202 (268)
T ss_dssp HHHHHHHHTTTCC-CEEEETTEEEEECTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCE-EEEECCCEEEEEeCCCChhHHHHHHH
Confidence 5677788999876 37889999999998 999999764
No 275
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=21.38 E-value=1.6e+02 Score=21.81 Aligned_cols=59 Identities=15% Similarity=0.111 Sum_probs=40.1
Q ss_pred ccccccccCCCCccHHHHHHHhhcCCceEEEcCC---------cCEEEeccHHHHHHHH-HhCCCccCCCCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYGPLMLLQLGQ---------VPAIIVSSPQVAKEVM-KTHDVVFASRPH 67 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG~i~~l~~g~---------~~~vvv~~~~~ike~l-~~~~~~f~~Rp~ 67 (221)
++|||..- -....+.++..+||+|..+++-. .-.|-..+++.+..++ .-++..+.+|+.
T Consensus 99 ~v~nlp~~---~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 167 (284)
T 3smz_A 99 CVANLPPS---LTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTL 167 (284)
T ss_dssp EEESCCTT---CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred EEcCCCCc---CCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 45665432 22467888899999998876532 2356667999999888 445666777754
No 276
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=20.74 E-value=1.9e+02 Score=19.18 Aligned_cols=39 Identities=10% Similarity=0.240 Sum_probs=30.1
Q ss_pred cHHHHHHHhhcCCceEEEcCCc--------CEEEeccHHHHHHHHHh
Q 048376 19 HHRLRDLTNKYGPLMLLQLGQV--------PAIIVSSPQVAKEVMKT 57 (221)
Q Consensus 19 ~~~~~~~~~~YG~i~~l~~g~~--------~~vvv~~~~~ike~l~~ 57 (221)
...+.++-++||+|..+.+-.. -.|-..+++.|..++..
T Consensus 109 ~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 109 ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp HHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHH
Confidence 4678888999999988877432 46777799999998853
No 277
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=20.51 E-value=2.4e+02 Score=20.18 Aligned_cols=58 Identities=14% Similarity=0.163 Sum_probs=39.1
Q ss_pred ccccccccCCCCccHHHHHHHhhcC-CceEEEcC----CcCEEEeccHHHHHHHHH-hCCCccC-CCC
Q 048376 6 LIGNLHQLAGSLPHHRLRDLTNKYG-PLMLLQLG----QVPAIIVSSPQVAKEVMK-THDVVFA-SRP 66 (221)
Q Consensus 6 iiGnl~~l~~~~~~~~~~~~~~~YG-~i~~l~~g----~~~~vvv~~~~~ike~l~-~~~~~f~-~Rp 66 (221)
++|||..- -....+.++..+|| .|..+.+- +.-+|-..+++.+..++. -++..+. +|+
T Consensus 155 ~V~nlp~~---~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~ 219 (229)
T 2adc_A 155 HLSNIPPS---VSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHH 219 (229)
T ss_dssp EEECCCTT---CCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred EEeCCCcc---CCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCe
Confidence 35655432 23467888999999 89888872 244566679999988886 3444555 554
Done!