Query 048377
Match_columns 118
No_of_seqs 183 out of 1042
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 15:28:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048377.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048377hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kvn_X Esterase ESTA; beta bar 99.9 9.9E-25 3.4E-29 175.6 8.5 102 1-118 183-289 (632)
2 3mil_A Isoamyl acetate-hydroly 94.6 0.0098 3.3E-07 40.7 1.2 71 2-81 109-179 (240)
3 2hsj_A Putative platelet activ 93.4 0.083 2.8E-06 35.5 3.8 58 7-77 124-181 (214)
4 1yzf_A Lipase/acylhydrolase; s 88.6 0.38 1.3E-05 31.3 3.3 53 7-78 104-156 (195)
5 3p94_A GDSL-like lipase; serin 85.9 1.7 5.8E-05 28.4 5.3 56 4-77 112-167 (204)
6 1es9_A PAF-AH, platelet-activa 85.9 1.1 3.7E-05 30.5 4.4 52 6-77 129-180 (232)
7 1fxw_F Alpha2, platelet-activa 85.9 0.65 2.2E-05 31.7 3.3 51 6-76 130-180 (229)
8 1vjg_A Putative lipase from th 85.1 1.5 5E-05 29.4 4.8 49 8-76 130-178 (218)
9 4hf7_A Putative acylhydrolase; 84.5 1 3.5E-05 30.3 3.8 54 5-75 117-170 (209)
10 3evi_A Phosducin-like protein 77.2 3.3 0.00011 25.7 4.0 34 49-89 40-73 (118)
11 1esc_A Esterase; 2.10A {Strept 75.2 3.9 0.00013 29.2 4.4 34 36-76 217-250 (306)
12 3lub_A Putative creatinine ami 67.6 2.3 7.8E-05 30.4 1.7 45 2-75 106-150 (254)
13 4h08_A Putative hydrolase; GDS 66.9 6.4 0.00022 25.8 3.8 53 8-76 112-164 (200)
14 2vpt_A Lipolytic enzyme; ester 65.4 3.2 0.00011 27.7 2.0 31 44-76 136-166 (215)
15 1w0d_A 3-isopropylmalate dehyd 56.9 13 0.00043 27.8 4.1 38 49-86 189-226 (337)
16 3vmk_A 3-isopropylmalate dehyd 55.8 13 0.00045 28.1 4.1 39 48-86 212-250 (375)
17 3r8w_A 3-isopropylmalate dehyd 55.8 14 0.00047 28.3 4.2 39 48-86 240-278 (405)
18 3udu_A 3-isopropylmalate dehyd 55.4 15 0.0005 27.7 4.3 39 48-86 200-238 (361)
19 2y3z_A 3-isopropylmalate dehyd 54.0 15 0.00051 27.7 4.1 39 48-86 196-234 (359)
20 1x0l_A Homoisocitrate dehydrog 54.0 15 0.00052 27.3 4.1 37 49-85 180-216 (333)
21 3blx_B Isocitrate dehydrogenas 53.9 14 0.00048 27.7 3.9 38 49-86 199-236 (354)
22 4dnd_A Syntaxin-10, SYN10; str 53.9 0.5 1.7E-05 30.6 -3.5 80 3-89 11-104 (130)
23 1a05_A IPMDH, IMDH, 3-isopropy 53.8 16 0.00055 27.4 4.3 38 48-85 198-235 (358)
24 1cnz_A IPMDH, IMDH, protein (3 53.3 15 0.00053 27.6 4.1 39 48-86 203-241 (363)
25 1vlc_A 3-isopropylmalate dehyd 53.3 16 0.00053 27.7 4.1 39 48-86 207-245 (366)
26 3flk_A Tartrate dehydrogenase/ 52.5 16 0.00055 27.5 4.1 38 49-86 202-239 (364)
27 3u1h_A 3-isopropylmalate dehyd 51.3 17 0.00059 27.7 4.1 39 48-86 219-257 (390)
28 1h7n_A 5-aminolaevulinic acid 48.7 24 0.00081 26.4 4.3 53 2-71 78-132 (342)
29 3blx_A Isocitrate dehydrogenas 46.6 20 0.00067 26.9 3.7 38 49-86 193-231 (349)
30 1w5q_A Delta-aminolevulinic ac 46.5 27 0.00094 26.0 4.4 53 2-71 75-128 (337)
31 3rjt_A Lipolytic protein G-D-S 45.9 27 0.00094 22.4 4.1 35 38-79 148-182 (216)
32 3ty4_A Probable homoisocitrate 44.6 22 0.00076 26.8 3.7 38 49-86 210-250 (366)
33 1esc_A Esterase; 2.10A {Strept 44.1 23 0.0008 25.0 3.7 32 40-71 155-186 (306)
34 2d1c_A Isocitrate dehydrogenas 41.7 29 0.00099 27.3 4.1 37 49-85 201-237 (496)
35 1w1z_A Delta-aminolevulinic ac 40.1 39 0.0013 25.1 4.3 52 2-71 73-124 (328)
36 2dbc_A PDCL2, unnamed protein 39.5 33 0.0011 21.0 3.5 29 54-89 52-80 (135)
37 3dc7_A Putative uncharacterize 37.4 27 0.00092 23.2 3.0 27 45-71 111-137 (232)
38 1l6s_A Porphobilinogen synthas 35.4 43 0.0015 24.8 3.9 53 2-72 67-119 (323)
39 1v7z_A Creatininase, creatinin 34.2 15 0.0005 26.1 1.3 15 2-16 106-120 (260)
40 1pv8_A Delta-aminolevulinic ac 34.2 44 0.0015 24.9 3.8 51 2-71 68-121 (330)
41 1fxw_F Alpha2, platelet-activa 33.6 52 0.0018 21.8 4.0 28 44-71 112-139 (229)
42 1es9_A PAF-AH, platelet-activa 33.4 51 0.0018 21.8 3.9 29 44-72 111-139 (232)
43 3qfa_C Thioredoxin; protein-pr 33.1 54 0.0018 19.2 3.6 23 51-73 50-72 (116)
44 4g3o_A E3 ubiquitin-protein li 32.4 35 0.0012 18.8 2.4 22 44-65 11-32 (58)
45 4h08_A Putative hydrolase; GDS 32.0 56 0.0019 21.0 3.9 27 44-70 92-118 (200)
46 4euy_A Uncharacterized protein 31.5 51 0.0017 18.7 3.3 21 53-73 39-59 (105)
47 3m9j_A Thioredoxin; oxidoreduc 31.3 50 0.0017 18.5 3.2 21 53-73 41-61 (105)
48 3f3q_A Thioredoxin-1; His TAG, 31.2 51 0.0017 19.0 3.3 21 53-73 45-65 (109)
49 1lbq_A Ferrochelatase; rossman 30.1 90 0.0031 23.2 5.1 16 2-17 118-133 (362)
50 2wao_A Endoglucanase E; plant 29.8 57 0.002 23.4 3.9 28 43-70 233-260 (341)
51 4hl7_A Naprtase, nicotinate ph 29.5 47 0.0016 25.7 3.4 34 40-74 232-273 (446)
52 3bzw_A Putative lipase; protei 29.4 49 0.0017 22.7 3.4 27 45-71 142-168 (274)
53 1ego_A Glutaredoxin; electron 28.7 34 0.0012 18.7 2.1 22 52-73 19-40 (85)
54 1gh2_A Thioredoxin-like protei 28.6 60 0.0021 18.4 3.3 20 54-73 43-62 (107)
55 2vim_A Thioredoxin, TRX; thior 27.8 65 0.0022 17.9 3.3 18 56-73 43-60 (104)
56 2w9x_A AXE2A, CJCE2B, putative 27.3 82 0.0028 22.9 4.4 28 43-70 266-293 (366)
57 3zzx_A Thioredoxin; oxidoreduc 26.6 65 0.0022 18.9 3.2 22 52-73 40-61 (105)
58 3os4_A Naprtase, nicotinate ph 26.5 69 0.0024 24.4 3.9 24 51-74 239-263 (407)
59 4ev1_A Anabena TIC22; TIC22 fo 26.5 1.1E+02 0.0036 21.8 4.7 34 49-82 167-200 (252)
60 1syr_A Thioredoxin; SGPP, stru 26.3 69 0.0024 18.4 3.3 19 55-73 49-67 (112)
61 3p0r_A Azoreductase; structura 26.3 67 0.0023 21.5 3.5 22 52-73 28-49 (211)
62 1yir_A Naprtase 2, nicotinate 25.9 55 0.0019 24.9 3.3 25 51-75 244-269 (408)
63 2e0q_A Thioredoxin; electron t 25.8 74 0.0025 17.4 3.3 19 55-73 39-57 (104)
64 3ho7_A OXYR; beta-alpha-barrel 25.7 69 0.0023 20.4 3.4 41 48-88 24-66 (232)
65 2q0q_A ARYL esterase; SGNH hyd 25.5 1E+02 0.0034 19.7 4.3 29 43-71 104-139 (216)
66 2pu9_C TRX-F, thioredoxin F-ty 25.3 75 0.0026 18.1 3.3 18 55-72 47-64 (111)
67 3no4_A Creatininase, creatinin 25.0 26 0.0009 25.1 1.3 15 2-16 115-129 (267)
68 1ti3_A Thioredoxin H, PTTRXH1; 24.9 74 0.0025 18.0 3.2 19 55-73 49-67 (113)
69 4aq4_A SN-glycerol-3-phosphate 24.1 97 0.0033 22.1 4.3 21 49-69 21-41 (419)
70 2vlu_A Thioredoxin, thioredoxi 23.9 81 0.0028 18.2 3.3 20 54-73 56-75 (122)
71 2vm1_A Thioredoxin, thioredoxi 23.9 82 0.0028 17.9 3.3 20 54-73 50-69 (118)
72 1i6a_A OXYR, hydrogen peroxide 23.8 80 0.0027 20.1 3.5 40 48-87 18-59 (219)
73 4i3s_G Outer domain of HIV-1 G 23.8 77 0.0026 21.7 3.3 24 44-68 60-83 (190)
74 3jv9_A OXYR, transcriptional r 23.6 70 0.0024 20.0 3.1 40 48-87 17-58 (219)
75 3tyg_A Envelope glycoprotein G 23.5 76 0.0026 21.9 3.3 25 44-68 125-150 (199)
76 2l6c_A Thioredoxin; oxidoreduc 23.2 88 0.003 17.9 3.3 21 53-73 40-60 (110)
77 1faa_A Thioredoxin F; electron 23.1 85 0.0029 18.2 3.3 20 54-73 59-78 (124)
78 2waa_A Acetyl esterase, xylan 23.1 74 0.0025 23.0 3.4 28 43-70 245-272 (347)
79 3obk_A Delta-aminolevulinic ac 22.6 35 0.0012 25.7 1.5 52 2-71 82-135 (356)
80 3dci_A Arylesterase; SGNH_hydr 22.6 1.1E+02 0.0039 20.1 4.1 29 43-71 122-155 (232)
81 2av4_A Thioredoxin-like protei 21.3 62 0.0021 21.4 2.4 37 49-89 58-95 (160)
82 1xfl_A Thioredoxin H1; AT3G510 21.2 93 0.0032 18.4 3.2 20 54-73 60-79 (124)
83 1r26_A Thioredoxin; redox-acti 20.8 78 0.0027 18.9 2.8 19 55-73 60-78 (125)
84 3d22_A TRXH4, thioredoxin H-ty 20.6 1E+02 0.0034 18.4 3.3 21 53-73 67-87 (139)
85 2oe3_A Thioredoxin-3; electron 20.3 83 0.0028 18.3 2.8 20 54-73 52-71 (114)
No 1
>3kvn_X Esterase ESTA; beta barrel, alpha-beta-alpha motif, cell membrane, cell out membrane, hydrolase, membrane, transmembrane; HET: C8E; 2.50A {Pseudomonas aeruginosa}
Probab=99.91 E-value=9.9e-25 Score=175.60 Aligned_cols=102 Identities=26% Similarity=0.415 Sum_probs=88.6
Q ss_pred ChhhcCCcEEEEeCCCccCchhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhhhccCCCcEEEEEeccHHHHHHHH
Q 048377 1 ELYGVGARRIGVLSLPPIGCVPVQRTLNGGIARGCSDFANQAAQIYNSKLQSVVDSLSKEFPDSRFVYFDIYNPLNSLIQ 80 (118)
Q Consensus 1 ~Ly~~GAr~f~v~~lpplgc~P~~~~~~~~~~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~p~~~i~~~D~~~~~~~i~~ 80 (118)
+||++|||||+|+++||+||+|... ..+|.+.+|+++..||.+|+++|++|+ ++|+++|+|.++.++++
T Consensus 183 ~L~~~Gar~~~v~~~pp~gc~P~~~------~~~c~~~~n~~~~~~N~~L~~~l~~l~-----~~i~~~D~y~~~~~~~~ 251 (632)
T 3kvn_X 183 ALQQAGARYIVVWLLPDLGLTPATF------GGPLQPFASQLSGTFNAELTAQLSQAG-----ANVIPLNIPLLLKEGMA 251 (632)
T ss_dssp HHHHTTCCCEEEECCCCGGGSTTTT------TSTTHHHHHHHHHHHHHHHHHHHHHHC-----CCEEEECHHHHHHHHHH
T ss_pred HHHHcCCcEEEEeCCCCCCCccccc------CCCchHHHHHHHHHHHHHHHHHHHhCC-----CeEEEEEcHHHHHHHHh
Confidence 4899999999999999999999852 247999999999999999999999996 48999999999999999
Q ss_pred CCCCCCCccCC--cceecccccCCccccCCCC---CCCCCCCC
Q 048377 81 NPPQYGFEVAD--KGCCGTGNLEVSILCNRLE---DAATCPDA 118 (118)
Q Consensus 81 nP~~yGf~~~~--~aCCg~g~~~~~~~C~~~~---~~~~C~~~ 118 (118)
||++|||++++ ++||+.|. .|++.. ...+|+||
T Consensus 252 np~~yGf~~~~~~~~cCg~g~-----~C~~~~~~~~~~~C~~~ 289 (632)
T 3kvn_X 252 NPASFGLAADQNLIGTCFSGN-----GCTMNPTYGINGSTPDP 289 (632)
T ss_dssp CGGGGTCCTTSCTTTCBSSCT-----TSCBCTTTSTTSSSCCG
T ss_pred CHHhcCCCcCCCCccccCCCC-----ccCCcccccccccCCCc
Confidence 99999999875 69999763 688643 11279886
No 2
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=94.64 E-value=0.0098 Score=40.72 Aligned_cols=71 Identities=7% Similarity=0.013 Sum_probs=46.5
Q ss_pred hhhcCCcEEEEeCCCccCchhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhhhccCCCcEEEEEeccHHHHHHHHC
Q 048377 2 LYGVGARRIGVLSLPPIGCVPVQRTLNGGIARGCSDFANQAAQIYNSKLQSVVDSLSKEFPDSRFVYFDIYNPLNSLIQN 81 (118)
Q Consensus 2 Ly~~GAr~f~v~~lpplgc~P~~~~~~~~~~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~p~~~i~~~D~~~~~~~i~~n 81 (118)
+.+.|+ ++++++.||++..+........ ...+....|+....||+.+++..++. .+.++|++..+.+...+
T Consensus 109 ~~~~~~-~vil~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~n~~~~~~a~~~-------~v~~vD~~~~~~~~~~~ 179 (240)
T 3mil_A 109 MKSYHI-RPIIIGPGLVDREKWEKEKSEE-IALGYFRTNENFAIYSDALAKLANEE-------KVPFVALNKAFQQEGGD 179 (240)
T ss_dssp HHHTTC-EEEEECCCCCCHHHHHHHCHHH-HHTTCCCCHHHHHHHHHHHHHHHHHT-------TCCEECHHHHHHHHHGG
T ss_pred HHHcCC-eEEEEcCCCCCchhhhhhcccc-ccccccchHHHHHHHHHHHHHHHHHh-------CCeEEehHHHHhhcCCc
Confidence 455676 8889999999877543221000 01123345778889999998877653 35578999998887653
No 3
>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3
Probab=93.35 E-value=0.083 Score=35.49 Aligned_cols=58 Identities=16% Similarity=0.233 Sum_probs=39.2
Q ss_pred CcEEEEeCCCccCchhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhhhccCCCcEEEEEeccHHHHH
Q 048377 7 ARRIGVLSLPPIGCVPVQRTLNGGIARGCSDFANQAAQIYNSKLQSVVDSLSKEFPDSRFVYFDIYNPLNS 77 (118)
Q Consensus 7 Ar~f~v~~lpplgc~P~~~~~~~~~~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~p~~~i~~~D~~~~~~~ 77 (118)
.++|+|+++||+++.|.+.... ....+..+..||+.|++..++ +| .+.++|++..+.+
T Consensus 124 ~~~iil~~~~p~~~~~~~~~~~-------~~~~~~~~~~~n~~l~~~a~~----~~--~~~~iD~~~~~~~ 181 (214)
T 2hsj_A 124 LTEIKLLSILPVNEREEYQQAV-------YIRSNEKIQNWNQAYQELASA----YM--QVEFVPVFDCLTD 181 (214)
T ss_dssp TCEEEEECCCCCCCSGGGHHHH-------TTCCHHHHHHHHHHHHHHHTT----CT--TEEEECCGGGSBC
T ss_pred CCeEEEEecCCCCccccccccc-------ccccHHHHHHHHHHHHHHHHH----cC--CCEEEEhHHHHhC
Confidence 5789999999999877432211 112366778888888765543 33 3668899987654
No 4
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=88.64 E-value=0.38 Score=31.31 Aligned_cols=53 Identities=9% Similarity=0.118 Sum_probs=37.3
Q ss_pred CcEEEEeCCCccCchhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhhhccCCCcEEEEEeccHHHHHH
Q 048377 7 ARRIGVLSLPPIGCVPVQRTLNGGIARGCSDFANQAAQIYNSKLQSVVDSLSKEFPDSRFVYFDIYNPLNSL 78 (118)
Q Consensus 7 Ar~f~v~~lpplgc~P~~~~~~~~~~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~p~~~i~~~D~~~~~~~i 78 (118)
.++++++++||++..+ +....+..+..||..+++..++. .+.++|++..+.+.
T Consensus 104 ~~~vi~~~~~p~~~~~------------~~~~~~~~~~~~n~~~~~~a~~~-------~~~~iD~~~~~~~~ 156 (195)
T 1yzf_A 104 SEKVILITPPYADSGR------------RPERPQTRIKELVKVAQEVGAAH-------NLPVIDLYKAMTVY 156 (195)
T ss_dssp GGGEEEECCCCCCTTT------------CTTSCHHHHHHHHHHHHHHHHHT-------TCCEECHHHHHHHS
T ss_pred CCEEEEEcCCCCcccc------------chhhhHHHHHHHHHHHHHHHHHh-------CCeEEehHHHHhhc
Confidence 4678999999876431 11234677888999988876643 36788999988764
No 5
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=85.88 E-value=1.7 Score=28.45 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=37.0
Q ss_pred hcCCcEEEEeCCCccCchhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhhhccCCCcEEEEEeccHHHHH
Q 048377 4 GVGARRIGVLSLPPIGCVPVQRTLNGGIARGCSDFANQAAQIYNSKLQSVVDSLSKEFPDSRFVYFDIYNPLNS 77 (118)
Q Consensus 4 ~~GAr~f~v~~lpplgc~P~~~~~~~~~~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~p~~~i~~~D~~~~~~~ 77 (118)
+.|+ ++++++++|....|.... ...+.....||+.+++..++. .+.++|++..+.+
T Consensus 112 ~~~~-~vil~~~~p~~~~~~~~~----------~~~~~~~~~~n~~l~~~a~~~-------~v~~iD~~~~~~~ 167 (204)
T 3p94_A 112 ANHI-KVIFCSVLPAYDFPWRPG----------MQPADKVIQLNKWIKEYADKN-------GLTYVDYHSAMKD 167 (204)
T ss_dssp HTTC-EEEEECCCCCSCBTTBTT----------CCCHHHHHHHHHHHHHHHHHT-------TCEEECHHHHHCC
T ss_pred hCCC-eEEEEeCCCCCCCCCCcc----------ccHHHHHHHHHHHHHHHHHHc-------CCcEEchhhhhhc
Confidence 3454 688888888876553211 023566789999988876643 3678899887743
No 6
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=85.86 E-value=1.1 Score=30.50 Aligned_cols=52 Identities=19% Similarity=0.217 Sum_probs=36.3
Q ss_pred CCcEEEEeCCCccCchhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhhhccCCCcEEEEEeccHHHHH
Q 048377 6 GARRIGVLSLPPIGCVPVQRTLNGGIARGCSDFANQAAQIYNSKLQSVVDSLSKEFPDSRFVYFDIYNPLNS 77 (118)
Q Consensus 6 GAr~f~v~~lpplgc~P~~~~~~~~~~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~p~~~i~~~D~~~~~~~ 77 (118)
...+|++++++|.+..|. .++..+..||..|++.+.+ ...+.++|++..+.+
T Consensus 129 p~~~ii~~~~~p~~~~~~--------------~~~~~~~~~n~~l~~~~a~------~~~v~~iD~~~~~~~ 180 (232)
T 1es9_A 129 PQARVVVLGLLPRGQHPN--------------PLREKNRRVNELVRAALAG------HPRAHFLDADPGFVH 180 (232)
T ss_dssp TTCEEEEECCCCCSSSCC--------------HHHHHHHHHHHHHHHHHHS------CTTEEEECCCCCCSC
T ss_pred CCCeEEEecCCCCCCCch--------------hHHHHHHHHHHHHHHHHhh------cCCCEEEeChHHhcC
Confidence 356799999998776542 2356678899998875442 245778999986543
No 7
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A
Probab=85.86 E-value=0.65 Score=31.67 Aligned_cols=51 Identities=22% Similarity=0.141 Sum_probs=34.9
Q ss_pred CCcEEEEeCCCccCchhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhhhccCCCcEEEEEeccHHHH
Q 048377 6 GARRIGVLSLPPIGCVPVQRTLNGGIARGCSDFANQAAQIYNSKLQSVVDSLSKEFPDSRFVYFDIYNPLN 76 (118)
Q Consensus 6 GAr~f~v~~lpplgc~P~~~~~~~~~~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~p~~~i~~~D~~~~~~ 76 (118)
+..+|+|++++|.+..|. ..+..+..||..|++..+ + ...+.++|++..+.
T Consensus 130 p~~~iil~~~~p~~~~~~--------------~~~~~~~~~n~~l~~~a~----~--~~~v~~iD~~~~~~ 180 (229)
T 1fxw_F 130 PQAKIIVLGLLPRGEKPN--------------PLRQKNAKVNQLLKVSLP----K--LANVQLLDTDGGFV 180 (229)
T ss_dssp TTCEEEEECCCCCSSSCC--------------HHHHHHHHHHHHHHHHSS----S--SSSEEEECCCCSCB
T ss_pred CCCeEEEEeCCCCCCchh--------------hHHHHHHHHHHHHHHHHh----c--CCCeEEEeCHHHhh
Confidence 456789999988776542 245667788888876542 1 24577899998654
No 8
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=85.12 E-value=1.5 Score=29.40 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=34.3
Q ss_pred cEEEEeCCCccCchhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhhhccCCCcEEEEEeccHHHH
Q 048377 8 RRIGVLSLPPIGCVPVQRTLNGGIARGCSDFANQAAQIYNSKLQSVVDSLSKEFPDSRFVYFDIYNPLN 76 (118)
Q Consensus 8 r~f~v~~lpplgc~P~~~~~~~~~~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~p~~~i~~~D~~~~~~ 76 (118)
.+|+++++||..+ | .. ...+.....||+.+++..++. .+.++|++..+.
T Consensus 130 ~~iil~~~~p~~~-~-----~~-------~~~~~~~~~~n~~l~~~a~~~-------~v~~iD~~~~~~ 178 (218)
T 1vjg_A 130 YPVLMISPAPYIE-Q-----QD-------PGRRRRTIDLSQQLALVCQDL-------DVPYLDVFPLLE 178 (218)
T ss_dssp SCEEEECCCCCCC-T-----TC-------TTHHHHHHHHHHHHHHHHHHH-------TCCEECCTGGGS
T ss_pred CcEEEECCCCccc-c-----cc-------chHHHHHHHHHHHHHHHHHHc-------CCcEEehHHhhc
Confidence 5799999988854 1 00 124667888999998877654 367889987653
No 9
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=84.46 E-value=1 Score=30.28 Aligned_cols=54 Identities=19% Similarity=0.346 Sum_probs=34.9
Q ss_pred cCCcEEEEeCCCccCchhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhhhccCCCcEEEEEeccHHH
Q 048377 5 VGARRIGVLSLPPIGCVPVQRTLNGGIARGCSDFANQAAQIYNSKLQSVVDSLSKEFPDSRFVYFDIYNPL 75 (118)
Q Consensus 5 ~GAr~f~v~~lpplgc~P~~~~~~~~~~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~p~~~i~~~D~~~~~ 75 (118)
.|+ ++++++++|....|..... ...++.+..||..+++..++. .+.++|+++.+
T Consensus 117 ~~~-~iil~~~~P~~~~~~~~~~---------~~~~~~i~~~n~~i~~~a~~~-------~v~~iD~~~~~ 170 (209)
T 4hf7_A 117 NKI-KVILTSVLPAAEFPWRREI---------KDAPQKIQSLNARIEAYAKAN-------KIPFVNYYQPM 170 (209)
T ss_dssp TTC-EEEEECCCCCSCCTTCTTC---------CCHHHHHHHHHHHHHHHHHHT-------TCCEECSHHHH
T ss_pred cCc-eEEEEeeeccCcccccccc---------cchhHHHHHHHHHHHHHHHhc-------CCeEeecHHHH
Confidence 344 5888888888776653321 223566778898887755432 35578998765
No 10
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=77.19 E-value=3.3 Score=25.70 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=25.7
Q ss_pred HHHHHHHhhhccCCCcEEEEEeccHHHHHHHHCCCCCCCcc
Q 048377 49 KLQSVVDSLSKEFPDSRFVYFDIYNPLNSLIQNPPQYGFEV 89 (118)
Q Consensus 49 ~L~~~l~~l~~~~p~~~i~~~D~~~~~~~i~~nP~~yGf~~ 89 (118)
.+...+++|.+++|+++|+.+|+... +++||...
T Consensus 40 ~~~p~l~~la~~~~~v~f~kvd~d~~-------~~~~~v~~ 73 (118)
T 3evi_A 40 LVNQHLSLLARKFPETKFVKAIVNSC-------IQHYHDNC 73 (118)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEEGGGT-------STTCCGGG
T ss_pred HHHHHHHHHHHHCCCCEEEEEEhHHh-------HHHCCCCC
Confidence 34556677777899999999999873 57887654
No 11
>1esc_A Esterase; 2.10A {Streptomyces scabiei} SCOP: c.23.10.1 PDB: 1esd_A 1ese_A
Probab=75.16 E-value=3.9 Score=29.23 Aligned_cols=34 Identities=12% Similarity=0.148 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccCCCcEEEEEeccHHHH
Q 048377 36 SDFANQAAQIYNSKLQSVVDSLSKEFPDSRFVYFDIYNPLN 76 (118)
Q Consensus 36 ~~~~n~~~~~~N~~L~~~l~~l~~~~p~~~i~~~D~~~~~~ 76 (118)
...++..+..+|..++++.++. .+.|+|++..|.
T Consensus 217 ~~~~~~~~~~ln~~i~~~A~~~-------g~~~vD~~~~f~ 250 (306)
T 1esc_A 217 LPVLDQIQKRLNDAMKKAAADG-------GADFVDLYAGTG 250 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-------TCEEECTGGGCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-------CCEEEeCccccc
Confidence 5667888999999888765532 366889998763
No 12
>3lub_A Putative creatinine amidohydrolase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Bacteroides fragilis}
Probab=67.62 E-value=2.3 Score=30.38 Aligned_cols=45 Identities=27% Similarity=0.434 Sum_probs=32.9
Q ss_pred hhhcCCcEEEEeCCCccCchhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhhhccCCCcEEEEEeccHHH
Q 048377 2 LYGVGARRIGVLSLPPIGCVPVQRTLNGGIARGCSDFANQAAQIYNSKLQSVVDSLSKEFPDSRFVYFDIYNPL 75 (118)
Q Consensus 2 Ly~~GAr~f~v~~lpplgc~P~~~~~~~~~~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~p~~~i~~~D~~~~~ 75 (118)
|+..|.|||+++|=. + + | . |+.++.+|+.++++..++..+.+.+.
T Consensus 106 l~~~G~rrlvivNgH------------G----G-----N-------~-l~~a~~~l~~~~~~~~v~~~~w~~~~ 150 (254)
T 3lub_A 106 LHVQGFRKLLILSGH------------G----G-----N-------N-FKGMIRDLAFEYPDFLIAAANWFEVV 150 (254)
T ss_dssp HHHTTCCEEEEEESC------------T----T-----C-------C-CHHHHHHHHHHCTTCEEEEEEGGGSS
T ss_pred HHHcCCCEEEEEeCC------------c----h-----H-------H-HHHHHHHHHHHCCCcEEEEeehhhcc
Confidence 678899999999854 1 1 1 1 45566777778889999999877654
No 13
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=66.94 E-value=6.4 Score=25.77 Aligned_cols=53 Identities=6% Similarity=-0.039 Sum_probs=32.4
Q ss_pred cEEEEeCCCccCchhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhhhccCCCcEEEEEeccHHHH
Q 048377 8 RRIGVLSLPPIGCVPVQRTLNGGIARGCSDFANQAAQIYNSKLQSVVDSLSKEFPDSRFVYFDIYNPLN 76 (118)
Q Consensus 8 r~f~v~~lpplgc~P~~~~~~~~~~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~p~~~i~~~D~~~~~~ 76 (118)
.++++++++|..--+.. ......+..+..||..+++..++. .+.++|+|..+.
T Consensus 112 ~~ii~~~~~P~~~~~~~---------~~~~~~~~~~~~~n~~~~~~a~~~-------~v~~iD~~~~~~ 164 (200)
T 4h08_A 112 AKLIWANTTPVRTGEGM---------KEFAPITERLNVRNQIALKHINRA-------SIEVNDLWKVVI 164 (200)
T ss_dssp CEEEEECCCCCEESGGG---------CEECTHHHHHHHHHHHHHHHHHHT-------TCEEECHHHHHT
T ss_pred ccEEEeccCCCcccccc---------cccchhHHHHHHHHHHHHHHhhhc-------ceEEEecHHhHh
Confidence 35677777765322211 112345777888998887765542 366889887654
No 14
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=65.44 E-value=3.2 Score=27.74 Aligned_cols=31 Identities=10% Similarity=0.253 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhhhccCCCcEEEEEeccHHHH
Q 048377 44 QIYNSKLQSVVDSLSKEFPDSRFVYFDIYNPLN 76 (118)
Q Consensus 44 ~~~N~~L~~~l~~l~~~~p~~~i~~~D~~~~~~ 76 (118)
..||..+.+.++++.+ .+..+.++|++..+.
T Consensus 136 ~~~n~~l~~~~~~~~~--~~~~v~~iD~~~~~~ 166 (215)
T 2vpt_A 136 KQYNAVIPGIVQQKAN--AGKKVYFVKLSEIQF 166 (215)
T ss_dssp HHHHTTHHHHHHHHHH--TTCCEEEECGGGSCC
T ss_pred HHHHHHHHHHHHHHHh--cCCCEEEEecccccc
Confidence 4567777776666643 246788999998753
No 15
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=56.87 E-value=13 Score=27.78 Aligned_cols=38 Identities=18% Similarity=0.391 Sum_probs=32.3
Q ss_pred HHHHHHHhhhccCCCcEEEEEeccHHHHHHHHCCCCCC
Q 048377 49 KLQSVVDSLSKEFPDSRFVYFDIYNPLNSLIQNPPQYG 86 (118)
Q Consensus 49 ~L~~~l~~l~~~~p~~~i~~~D~~~~~~~i~~nP~~yG 86 (118)
..++...++.++||+..+-..=+-+....++.+|.+|-
T Consensus 189 lf~~~~~eva~eyp~i~~~~~~vD~~~mqlv~~P~~FD 226 (337)
T 1w0d_A 189 LWLRTVDEVGECYPDVEVAYQHVDAATIHMITDPGRFD 226 (337)
T ss_dssp HHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCS
T ss_pred HHHHHHHHHHHHCCceEEEEEEHHHHHHHHhhCccccc
Confidence 45566777888999999998888999999999999883
No 16
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=55.84 E-value=13 Score=28.13 Aligned_cols=39 Identities=23% Similarity=0.458 Sum_probs=33.1
Q ss_pred HHHHHHHHhhhccCCCcEEEEEeccHHHHHHHHCCCCCC
Q 048377 48 SKLQSVVDSLSKEFPDSRFVYFDIYNPLNSLIQNPPQYG 86 (118)
Q Consensus 48 ~~L~~~l~~l~~~~p~~~i~~~D~~~~~~~i~~nP~~yG 86 (118)
...++...++.++||++.+-..=+-+....++.+|++|-
T Consensus 212 glf~~~~~eva~eypdV~~~~~~VD~~am~lv~~P~~FD 250 (375)
T 3vmk_A 212 VLWREVVEEVAKDYPDVELEHIYIDNATMQLLRRPNEFD 250 (375)
T ss_dssp HHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCS
T ss_pred hHHHHHHHHHHHHCCCceEeeeeHHHHHHHHHhCcccCc
Confidence 455667778888999999988888899999999999884
No 17
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=55.80 E-value=14 Score=28.33 Aligned_cols=39 Identities=23% Similarity=0.425 Sum_probs=33.7
Q ss_pred HHHHHHHHhhhccCCCcEEEEEeccHHHHHHHHCCCCCC
Q 048377 48 SKLQSVVDSLSKEFPDSRFVYFDIYNPLNSLIQNPPQYG 86 (118)
Q Consensus 48 ~~L~~~l~~l~~~~p~~~i~~~D~~~~~~~i~~nP~~yG 86 (118)
...++...++.++||+..+-..=+-+....++.+|++|.
T Consensus 240 glf~~~~~eva~eYPdV~~~~~~VD~~amqLV~~P~~FD 278 (405)
T 3r8w_A 240 ILWRKRVTALASEYPDVELSHMYVDNAAMQLVRDPKQFD 278 (405)
T ss_dssp HHHHHHHHHHGGGSTTSEEEEEEHHHHHHHHHHCGGGCS
T ss_pred cHHHHHHHHHHhHCCCCeEEeeeHHHHHHHHHhChhhCc
Confidence 466677788888999999998888899999999999884
No 18
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=55.44 E-value=15 Score=27.72 Aligned_cols=39 Identities=21% Similarity=0.444 Sum_probs=33.2
Q ss_pred HHHHHHHHhhhccCCCcEEEEEeccHHHHHHHHCCCCCC
Q 048377 48 SKLQSVVDSLSKEFPDSRFVYFDIYNPLNSLIQNPPQYG 86 (118)
Q Consensus 48 ~~L~~~l~~l~~~~p~~~i~~~D~~~~~~~i~~nP~~yG 86 (118)
...++...++.++||+..+-..=+-+....++.+|.+|.
T Consensus 200 glf~~~~~eva~eypdV~~~~~~VD~~am~lv~~P~~FD 238 (361)
T 3udu_A 200 ILWREVVANVAKDYQDINLEYMYVDNAAMQIVKNPSIFD 238 (361)
T ss_dssp HHHHHHHHHHGGGCTTSEEEEEEHHHHHHHHHHCGGGCS
T ss_pred hHHHHHHHHHHHHCCCCeEEeeeHHHHHHHHHhCcccCc
Confidence 455667788888999999988888899999999999884
No 19
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=54.00 E-value=15 Score=27.67 Aligned_cols=39 Identities=13% Similarity=0.297 Sum_probs=33.1
Q ss_pred HHHHHHHHhhhccCCCcEEEEEeccHHHHHHHHCCCCCC
Q 048377 48 SKLQSVVDSLSKEFPDSRFVYFDIYNPLNSLIQNPPQYG 86 (118)
Q Consensus 48 ~~L~~~l~~l~~~~p~~~i~~~D~~~~~~~i~~nP~~yG 86 (118)
...++...++.++||+..+-..=+-+....++.+|.+|.
T Consensus 196 ~lf~~~~~eva~eypdI~~~~~~VD~~~mqlv~~P~~FD 234 (359)
T 2y3z_A 196 EFWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFD 234 (359)
T ss_dssp HHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCS
T ss_pred HHHHHHHHHHHHHCCcEEEEeeEHHHHHHHHhhCccccc
Confidence 355667778888999999998888899999999999883
No 20
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=54.00 E-value=15 Score=27.33 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=31.4
Q ss_pred HHHHHHHhhhccCCCcEEEEEeccHHHHHHHHCCCCC
Q 048377 49 KLQSVVDSLSKEFPDSRFVYFDIYNPLNSLIQNPPQY 85 (118)
Q Consensus 49 ~L~~~l~~l~~~~p~~~i~~~D~~~~~~~i~~nP~~y 85 (118)
..++...++.++||+..+-..=+-+....++.+|.+|
T Consensus 180 lf~~~~~eva~eyp~I~~~~~~vD~~~m~lv~~P~~F 216 (333)
T 1x0l_A 180 LFLDTVKEVAKDFPLVNVQDIIVDNCAMQLVMRPERF 216 (333)
T ss_dssp HHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGC
T ss_pred HHHHHHHHHHHHCCCceEEEEEHHHHHHHHhhCcccc
Confidence 4456667777899999998888889999999999988
No 21
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=53.92 E-value=14 Score=27.75 Aligned_cols=38 Identities=32% Similarity=0.434 Sum_probs=32.7
Q ss_pred HHHHHHHhhhccCCCcEEEEEeccHHHHHHHHCCCCCC
Q 048377 49 KLQSVVDSLSKEFPDSRFVYFDIYNPLNSLIQNPPQYG 86 (118)
Q Consensus 49 ~L~~~l~~l~~~~p~~~i~~~D~~~~~~~i~~nP~~yG 86 (118)
..++...++.++||+..+-..=+-+....++.+|.+|.
T Consensus 199 lf~~~~~eva~eypdI~~~~~~vD~~~m~lv~~P~~FD 236 (354)
T 3blx_B 199 LFVNVAKELSKEYPDLTLETELIDNSVLKVVTNPSAYT 236 (354)
T ss_dssp HHHHHHHHHGGGCTTSEEEEEEHHHHHHHHHHCGGGGT
T ss_pred HHHHHHHHHHHHCCCceEEEEEHHHHHHHHhhChhhCC
Confidence 45666777888999999998888899999999999985
No 22
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=53.91 E-value=0.5 Score=30.64 Aligned_cols=80 Identities=14% Similarity=0.179 Sum_probs=32.2
Q ss_pred hhcCCcEEEEeCCCccCchhhhhhhcCCCCCCchHHHHHHHHHHHHH--------------HHHHHHhhhccCCCcEEEE
Q 048377 3 YGVGARRIGVLSLPPIGCVPVQRTLNGGIARGCSDFANQAAQIYNSK--------------LQSVVDSLSKEFPDSRFVY 68 (118)
Q Consensus 3 y~~GAr~f~v~~lpplgc~P~~~~~~~~~~~~c~~~~n~~~~~~N~~--------------L~~~l~~l~~~~p~~~i~~ 68 (118)
.++|-++..|+++... =|.+.... ...+.++.+-..|.+- +...-.+|+..+..+..-+
T Consensus 11 ~~~~~~~~~~~~ms~~--DPF~~Vk~-----EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dL 83 (130)
T 4dnd_A 11 VDLGTENLYFQSMSLE--DPFFVVRG-----EVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDL 83 (130)
T ss_dssp ------------------CCHHHHHH-----HHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCccceeeecCCCC--CCcHHHHH-----HHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3678889988887733 37665432 1233344433333331 2222223333333344445
Q ss_pred EeccHHHHHHHHCCCCCCCcc
Q 048377 69 FDIYNPLNSLIQNPPQYGFEV 89 (118)
Q Consensus 69 ~D~~~~~~~i~~nP~~yGf~~ 89 (118)
-|.-..+.-+-+||++||+..
T Consensus 84 eDLe~sI~ivE~np~kF~l~~ 104 (130)
T 4dnd_A 84 EDLEETIGIVEANPGKFKLPA 104 (130)
T ss_dssp HHHHHHHHHHHHCHHHHCCCH
T ss_pred HHHHHHHHHHHhCHHhcCCCH
Confidence 567777777789999998764
No 23
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=53.83 E-value=16 Score=27.42 Aligned_cols=38 Identities=26% Similarity=0.517 Sum_probs=32.6
Q ss_pred HHHHHHHHhhhccCCCcEEEEEeccHHHHHHHHCCCCC
Q 048377 48 SKLQSVVDSLSKEFPDSRFVYFDIYNPLNSLIQNPPQY 85 (118)
Q Consensus 48 ~~L~~~l~~l~~~~p~~~i~~~D~~~~~~~i~~nP~~y 85 (118)
...++...++.++||+..+-+.=+-+....++.+|.+|
T Consensus 198 ~lf~~~~~eva~eypdI~~~~~~vD~~~mqlv~~P~~F 235 (358)
T 1a05_A 198 RLWREVVTEVARDYPDVRLSHMYVDNAAMQLIRAPAQF 235 (358)
T ss_dssp HHHHHHHHHHGGGCTTSEEEEEEHHHHHHHHHHCGGGC
T ss_pred hhHHHHHHHHHHHCCCceEEeeeHHHHHHHHHhCCCcc
Confidence 35566778888899999988888889999999999988
No 24
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=53.28 E-value=15 Score=27.59 Aligned_cols=39 Identities=26% Similarity=0.491 Sum_probs=33.0
Q ss_pred HHHHHHHHhhhccCCCcEEEEEeccHHHHHHHHCCCCCC
Q 048377 48 SKLQSVVDSLSKEFPDSRFVYFDIYNPLNSLIQNPPQYG 86 (118)
Q Consensus 48 ~~L~~~l~~l~~~~p~~~i~~~D~~~~~~~i~~nP~~yG 86 (118)
...++...++.++||+..+-..=+-+....++.+|.+|-
T Consensus 203 ~lf~~~~~eva~eypdI~~~~~~vD~~~m~lv~~P~~FD 241 (363)
T 1cnz_A 203 ILWREIVNDVAKTYPDVELAHMYIDNATMQLIKDPSQFD 241 (363)
T ss_dssp HHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCS
T ss_pred hhHHHHHHHHHHHCCCceEeeeeHHHHHHHHhhCcccce
Confidence 355667778888999999988888899999999999883
No 25
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=53.25 E-value=16 Score=27.65 Aligned_cols=39 Identities=26% Similarity=0.470 Sum_probs=32.9
Q ss_pred HHHHHHHHhhhccCCCcEEEEEeccHHHHHHHHCCCCCC
Q 048377 48 SKLQSVVDSLSKEFPDSRFVYFDIYNPLNSLIQNPPQYG 86 (118)
Q Consensus 48 ~~L~~~l~~l~~~~p~~~i~~~D~~~~~~~i~~nP~~yG 86 (118)
...++...++.++||+..+-..=+-+....++.+|.+|-
T Consensus 207 glf~~~~~eva~eypdV~~~~~~VD~~~mqlv~~P~~FD 245 (366)
T 1vlc_A 207 MLWRKVVNEVAREYPDVELTHIYVDNAAMQLILKPSQFD 245 (366)
T ss_dssp HHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCS
T ss_pred hHHHHHHHHHHHHCCCceEEeeeHHHHHHHHhhCcccce
Confidence 355666778888999999988888899999999999883
No 26
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=52.48 E-value=16 Score=27.50 Aligned_cols=38 Identities=8% Similarity=0.215 Sum_probs=31.7
Q ss_pred HHHHHHHhhhccCCCcEEEEEeccHHHHHHHHCCCCCC
Q 048377 49 KLQSVVDSLSKEFPDSRFVYFDIYNPLNSLIQNPPQYG 86 (118)
Q Consensus 49 ~L~~~l~~l~~~~p~~~i~~~D~~~~~~~i~~nP~~yG 86 (118)
..++...++.++||+..+-..=+-+....++.+|++|.
T Consensus 202 lf~~~~~eva~eypdv~~~~~~vD~~am~lv~~P~~FD 239 (364)
T 3flk_A 202 YWDKRTEAMAAHYPHVSWDKQHIDILCARFVLQPERFD 239 (364)
T ss_dssp HHHHHHHHHHTTCTTCEEEEEEHHHHHHHHHHCGGGCS
T ss_pred HHHHHHHHHHHHCCCceEEeeEHHHHHHHHHhCcccCc
Confidence 44556677778899999988888899999999999884
No 27
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=51.34 E-value=17 Score=27.67 Aligned_cols=39 Identities=28% Similarity=0.481 Sum_probs=33.0
Q ss_pred HHHHHHHHhhhccCCCcEEEEEeccHHHHHHHHCCCCCC
Q 048377 48 SKLQSVVDSLSKEFPDSRFVYFDIYNPLNSLIQNPPQYG 86 (118)
Q Consensus 48 ~~L~~~l~~l~~~~p~~~i~~~D~~~~~~~i~~nP~~yG 86 (118)
...++...++.++||++.+-..=+-+....++.+|.+|.
T Consensus 219 glfr~~~~eva~eYPdV~~~~~~VD~~amqLV~~P~~FD 257 (390)
T 3u1h_A 219 RLWREVAEEVAKEYPDVELEHMLVDNAAMQLIRNPRQFD 257 (390)
T ss_dssp HHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCS
T ss_pred hHHHHHHHHHHhHCCCCeEEeeeHHHHHHHHHhCcccCc
Confidence 455666778888999999988888899999999999884
No 28
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=48.67 E-value=24 Score=26.44 Aligned_cols=53 Identities=19% Similarity=0.347 Sum_probs=33.7
Q ss_pred hhhcCCcEEEEeCCCcc--CchhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhhhccCCCcEEEEEec
Q 048377 2 LYGVGARRIGVLSLPPI--GCVPVQRTLNGGIARGCSDFANQAAQIYNSKLQSVVDSLSKEFPDSRFVYFDI 71 (118)
Q Consensus 2 Ly~~GAr~f~v~~lppl--gc~P~~~~~~~~~~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~p~~~i~~~D~ 71 (118)
+.++|.+.|+++++||- ...+.-..... =|..+...+..+++++|+. +++.|+
T Consensus 78 ~~~lGi~~v~LFgv~~~~~~KD~~gs~A~~----------------~~g~v~rair~iK~~~pdl-~VitDv 132 (342)
T 1h7n_A 78 LVAKGLRSVILFGVPLIPGTKDPVGTAADD----------------PAGPVIQGIKFIREYFPEL-YIICDV 132 (342)
T ss_dssp HHHTTCCEEEEEEECCSTTCCBTTCGGGGC----------------TTSHHHHHHHHHHHHCTTS-EEEEEE
T ss_pred HHHCCCCEEEEecccCccCCCCccccccCC----------------CCChHHHHHHHHHHHCCCe-EEEEee
Confidence 67899999999999764 23332211111 0124566778888889984 456675
No 29
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=46.62 E-value=20 Score=26.90 Aligned_cols=38 Identities=18% Similarity=0.401 Sum_probs=31.4
Q ss_pred HHHHHHHhhh-ccCCCcEEEEEeccHHHHHHHHCCCCCC
Q 048377 49 KLQSVVDSLS-KEFPDSRFVYFDIYNPLNSLIQNPPQYG 86 (118)
Q Consensus 49 ~L~~~l~~l~-~~~p~~~i~~~D~~~~~~~i~~nP~~yG 86 (118)
..++...++. ++||+..+-..=+-+....++.+|.+|.
T Consensus 193 lf~~~~~eva~~eyp~i~~~~~~vD~~~~qlv~~P~~FD 231 (349)
T 3blx_A 193 LFRNIITEIGQKEYPDIDVSSIIVDNASMQAVAKPHQFD 231 (349)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEEHHHHHHHHHHCGGGCS
T ss_pred HHHHHHHHHHHhhCCCeeEEEeeHHHHHHHHhhCccccc
Confidence 4455666777 7899999988888899999999999883
No 30
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
Probab=46.55 E-value=27 Score=26.02 Aligned_cols=53 Identities=15% Similarity=0.235 Sum_probs=33.0
Q ss_pred hhhcCCcEEEEeCCCccC-chhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhhhccCCCcEEEEEec
Q 048377 2 LYGVGARRIGVLSLPPIG-CVPVQRTLNGGIARGCSDFANQAAQIYNSKLQSVVDSLSKEFPDSRFVYFDI 71 (118)
Q Consensus 2 Ly~~GAr~f~v~~lpplg-c~P~~~~~~~~~~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~p~~~i~~~D~ 71 (118)
+.++|.+.|++++++|-. ..+.-.... | =|..+..++..+++++|+. +++.|+
T Consensus 75 ~~~lGi~~v~LFgv~~~~~KD~~gs~A~-----------~-----~~g~v~rair~iK~~~pdl-~vitDv 128 (337)
T 1w5q_A 75 WVALGIPALALFPVTPVEKKSLDAAEAY-----------N-----PEGIAQRATRALRERFPEL-GIITDV 128 (337)
T ss_dssp HHHTTCCEEEEEECCCGGGCBSSCGGGG-----------C-----TTSHHHHHHHHHHHHCTTS-EEEEEE
T ss_pred HHHCCCCEEEEecCCCcccCCcccCccC-----------C-----CCChHHHHHHHHHHHCCCe-EEEEee
Confidence 678999999999996532 222111111 0 0125566788888899994 455665
No 31
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=45.92 E-value=27 Score=22.41 Aligned_cols=35 Identities=14% Similarity=0.292 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCcEEEEEeccHHHHHHH
Q 048377 38 FANQAAQIYNSKLQSVVDSLSKEFPDSRFVYFDIYNPLNSLI 79 (118)
Q Consensus 38 ~~n~~~~~~N~~L~~~l~~l~~~~p~~~i~~~D~~~~~~~i~ 79 (118)
..+.....||+.+++..++. .+.++|++..+.+..
T Consensus 148 ~~~~~~~~~n~~~~~~a~~~-------~~~~vD~~~~~~~~~ 182 (216)
T 3rjt_A 148 PMRKTVDAYIEAMRDVAASE-------HVPFVDVQAEFDRLL 182 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------TCCEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc-------CCeEEEcHHHHHHHH
Confidence 35778889999998877664 267899999988865
No 32
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=44.58 E-value=22 Score=26.78 Aligned_cols=38 Identities=5% Similarity=0.071 Sum_probs=31.6
Q ss_pred HHHHHHHhh---hccCCCcEEEEEeccHHHHHHHHCCCCCC
Q 048377 49 KLQSVVDSL---SKEFPDSRFVYFDIYNPLNSLIQNPPQYG 86 (118)
Q Consensus 49 ~L~~~l~~l---~~~~p~~~i~~~D~~~~~~~i~~nP~~yG 86 (118)
..++...++ .++||++.+-..=+-+....++.+|++|.
T Consensus 210 lf~~~~~ev~~~a~eypdV~~~~~~VD~~am~lv~~P~~FD 250 (366)
T 3ty4_A 210 LFRESCRHAQSLDPSYASINVDEQIVDSMVYRLFREPECFD 250 (366)
T ss_dssp HHHHHHHHHGGGCGGGTTSEEEEEEHHHHHHHHHHCGGGCS
T ss_pred HHHHHHHHHHHhHhhCCCceEEeeeHHHHHHHHHhCcccCc
Confidence 445556677 78899999998888899999999999884
No 33
>1esc_A Esterase; 2.10A {Streptomyces scabiei} SCOP: c.23.10.1 PDB: 1esd_A 1ese_A
Probab=44.08 E-value=23 Score=25.03 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcEEEEEec
Q 048377 40 NQAAQIYNSKLQSVVDSLSKEFPDSRFVYFDI 71 (118)
Q Consensus 40 n~~~~~~N~~L~~~l~~l~~~~p~~~i~~~D~ 71 (118)
......+=..|..+++++++..|+++|+++..
T Consensus 155 ~~~~~~~~~~l~~il~~ir~~~p~a~I~lvgy 186 (306)
T 1esc_A 155 DDQFERVGAELEELLDRIGYFAPDAKRVLVGY 186 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 33455677899999999998899999999853
No 34
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=41.70 E-value=29 Score=27.31 Aligned_cols=37 Identities=24% Similarity=0.514 Sum_probs=31.6
Q ss_pred HHHHHHHhhhccCCCcEEEEEeccHHHHHHHHCCCCC
Q 048377 49 KLQSVVDSLSKEFPDSRFVYFDIYNPLNSLIQNPPQY 85 (118)
Q Consensus 49 ~L~~~l~~l~~~~p~~~i~~~D~~~~~~~i~~nP~~y 85 (118)
..++...++.++||++.+-..=+-+....++.+|.+|
T Consensus 201 lfr~v~~eVa~eYPdI~~e~~~VD~~amqLV~~P~~F 237 (496)
T 2d1c_A 201 TLKRAFEQVAQEYPDIEAVHIIVDNAAHQLVKRPEQF 237 (496)
T ss_dssp HHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGC
T ss_pred HHHHHHHHHHHHCCCceEEEEeHHHHHHHHhhCcCcc
Confidence 4456677788899999998888889999999999988
No 35
>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynt heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A*
Probab=40.06 E-value=39 Score=25.12 Aligned_cols=52 Identities=21% Similarity=0.379 Sum_probs=32.6
Q ss_pred hhhcCCcEEEEeCCCccCchhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhhhccCCCcEEEEEec
Q 048377 2 LYGVGARRIGVLSLPPIGCVPVQRTLNGGIARGCSDFANQAAQIYNSKLQSVVDSLSKEFPDSRFVYFDI 71 (118)
Q Consensus 2 Ly~~GAr~f~v~~lpplgc~P~~~~~~~~~~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~p~~~i~~~D~ 71 (118)
+.++|.+.|+++++|.. ..+.-..... =|..+..++..+++++|+. +++.|+
T Consensus 73 ~~~lGi~~v~LFgvp~~-Kd~~gs~A~~----------------~~g~v~rair~iK~~~p~l-~vitDv 124 (328)
T 1w1z_A 73 LYDLGIQGIDLFGIPEQ-KTEDGSEAYN----------------DNGILQQAIRAIKKAVPEL-CIMTDV 124 (328)
T ss_dssp HHHHTCCEEEEEECCSS-CCSSCGGGGC----------------TTSHHHHHHHHHHHHSTTS-EEEEEE
T ss_pred HHHCCCCEEEEECCCCC-CCccccccCC----------------CCChHHHHHHHHHHHCCCe-EEEEee
Confidence 67899999999999633 3332211111 0124566778888889984 455565
No 36
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=39.49 E-value=33 Score=21.00 Aligned_cols=29 Identities=21% Similarity=0.396 Sum_probs=19.9
Q ss_pred HHhhhccCCCcEEEEEeccHHHHHHHHCCCCCCCcc
Q 048377 54 VDSLSKEFPDSRFVYFDIYNPLNSLIQNPPQYGFEV 89 (118)
Q Consensus 54 l~~l~~~~p~~~i~~~D~~~~~~~i~~nP~~yGf~~ 89 (118)
+.+|..+++++.|+.+|+... +.+||...
T Consensus 52 l~~la~~~~~v~~~~vd~~~~-------~~~~~i~~ 80 (135)
T 2dbc_A 52 LSVLARKFPETKFVKAIVNSC-------IEHYHDNC 80 (135)
T ss_dssp HHHHHHHCSSEEEEEECCSSS-------CSSCCSSC
T ss_pred HHHHHHHCCCcEEEEEEhhcC-------cccCCCCC
Confidence 344555678899999998653 57787643
No 37
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=37.37 E-value=27 Score=23.16 Aligned_cols=27 Identities=11% Similarity=0.341 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhhhccCCCcEEEEEec
Q 048377 45 IYNSKLQSVVDSLSKEFPDSRFVYFDI 71 (118)
Q Consensus 45 ~~N~~L~~~l~~l~~~~p~~~i~~~D~ 71 (118)
.|-..|+.+++.+++++|+++|+++-.
T Consensus 111 ~f~~~l~~li~~l~~~~P~~~iil~~p 137 (232)
T 3dc7_A 111 TFYGALMMLLTGLQTNWPTVPKLFISA 137 (232)
T ss_dssp SHHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 455688999999999999999998643
No 38
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A
Probab=35.35 E-value=43 Score=24.82 Aligned_cols=53 Identities=9% Similarity=0.099 Sum_probs=33.0
Q ss_pred hhhcCCcEEEEeCCCccCchhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhhhccCCCcEEEEEecc
Q 048377 2 LYGVGARRIGVLSLPPIGCVPVQRTLNGGIARGCSDFANQAAQIYNSKLQSVVDSLSKEFPDSRFVYFDIY 72 (118)
Q Consensus 2 Ly~~GAr~f~v~~lpplgc~P~~~~~~~~~~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~p~~~i~~~D~~ 72 (118)
+.++|.+.|+++++|.. ..+.-.... | =|..+...+..+++++|+. +++.|+-
T Consensus 67 ~~~lGi~~v~LFgvp~~-Kd~~gs~A~-----------~-----~~g~v~rair~iK~~~pdl-~vitDvc 119 (323)
T 1l6s_A 67 IANAGIRSVMTFGISHH-TDETGSDAW-----------R-----EDGLVARMSRICKQTVPEM-IVMSDTC 119 (323)
T ss_dssp HHHHTCCEEEEEEECSS-CBSSCGGGG-----------S-----TTSHHHHHHHHHHHHCTTS-EEEEEEC
T ss_pred HHHCCCCEEEEeCCCCC-CCccccccC-----------C-----CCCcHHHHHHHHHHHCCCe-EEEEeee
Confidence 67899999999999632 332211111 1 0125566778888889994 4566753
No 39
>1v7z_A Creatininase, creatinine amidohydrolase; Mn-activated creatininase, substrate complex; 1.60A {Pseudomonas SP} SCOP: c.125.1.1 PDB: 1j2u_A 1j2t_A 3a6d_A 3a6j_A 3a6k_A 3a6l_A 3a6g_A 3a6f_A 3a6e_A 3a6h_A 1q3k_A
Probab=34.21 E-value=15 Score=26.09 Aligned_cols=15 Identities=33% Similarity=0.372 Sum_probs=12.9
Q ss_pred hhhcCCcEEEEeCCC
Q 048377 2 LYGVGARRIGVLSLP 16 (118)
Q Consensus 2 Ly~~GAr~f~v~~lp 16 (118)
|+..|.|||+++|=.
T Consensus 106 l~~~GfrrivivNgH 120 (260)
T 1v7z_A 106 LARHGARRLVLMNGH 120 (260)
T ss_dssp HHHHTCCEEEEEECS
T ss_pred HHHcCCCEEEEEcCC
Confidence 788999999999854
No 40
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A
Probab=34.21 E-value=44 Score=24.88 Aligned_cols=51 Identities=22% Similarity=0.256 Sum_probs=30.1
Q ss_pred hhhcCCcEEEEeCCCccC-chhhhhhhcCCCCCCchHHHHHHHHHHH--HHHHHHHHhhhccCCCcEEEEEec
Q 048377 2 LYGVGARRIGVLSLPPIG-CVPVQRTLNGGIARGCSDFANQAAQIYN--SKLQSVVDSLSKEFPDSRFVYFDI 71 (118)
Q Consensus 2 Ly~~GAr~f~v~~lpplg-c~P~~~~~~~~~~~~c~~~~n~~~~~~N--~~L~~~l~~l~~~~p~~~i~~~D~ 71 (118)
+.++|.+.|+++++|.-. ..+. -+.+|| ..+...+..+++++|+. +++.|+
T Consensus 68 ~~~~Gi~~v~LFgvp~~~~Kd~~------------------gs~A~~~~g~v~~air~iK~~~pdl-~vitDv 121 (330)
T 1pv8_A 68 LVEEGLRCVLIFGVPSRVPKDER------------------GSAADSEESPAIEAIHLLRKTFPNL-LVACDV 121 (330)
T ss_dssp HHHHTCCEEEEEECC--------------------------------CCSHHHHHHHHHHHHSTTS-EEEEEE
T ss_pred HHHCCCCEEEEecCCcccCCCcc------------------ccccCCCCChHHHHHHHHHHHCCCe-EEEEee
Confidence 678999999999996431 1111 122333 36677788889899995 455565
No 41
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A
Probab=33.57 E-value=52 Score=21.81 Aligned_cols=28 Identities=7% Similarity=0.354 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhhhccCCCcEEEEEec
Q 048377 44 QIYNSKLQSVVDSLSKEFPDSRFVYFDI 71 (118)
Q Consensus 44 ~~~N~~L~~~l~~l~~~~p~~~i~~~D~ 71 (118)
..|-..|..+++.+++.+|+++|++...
T Consensus 112 ~~~~~~l~~~i~~l~~~~p~~~iil~~~ 139 (229)
T 1fxw_F 112 EEVAGGIEAIVQLINTRQPQAKIIVLGL 139 (229)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 4566778889999998899999998754
No 42
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=33.36 E-value=51 Score=21.79 Aligned_cols=29 Identities=14% Similarity=0.375 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhhccCCCcEEEEEecc
Q 048377 44 QIYNSKLQSVVDSLSKEFPDSRFVYFDIY 72 (118)
Q Consensus 44 ~~~N~~L~~~l~~l~~~~p~~~i~~~D~~ 72 (118)
..|-..|+++++.+++.+|+++|+++...
T Consensus 111 ~~~~~~l~~~i~~l~~~~p~~~ii~~~~~ 139 (232)
T 1es9_A 111 EQVTGGIKAIVQLVNERQPQARVVVLGLL 139 (232)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCeEEEecCC
Confidence 45667788889999988999999988654
No 43
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=33.08 E-value=54 Score=19.21 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=17.4
Q ss_pred HHHHHhhhccCCCcEEEEEeccH
Q 048377 51 QSVVDSLSKEFPDSRFVYFDIYN 73 (118)
Q Consensus 51 ~~~l~~l~~~~p~~~i~~~D~~~ 73 (118)
...+.++.++++++.|+.+|...
T Consensus 50 ~p~l~~l~~~~~~v~~~~vd~d~ 72 (116)
T 3qfa_C 50 KPFFHSLSEKYSNVIFLEVDVDD 72 (116)
T ss_dssp HHHHHHHHTTCTTSEEEEEETTT
T ss_pred HHHHHHHHHHCCCCEEEEEECCC
Confidence 34556677778889999999864
No 44
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=32.45 E-value=35 Score=18.81 Aligned_cols=22 Identities=14% Similarity=0.445 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhhhccCCCcE
Q 048377 44 QIYNSKLQSVVDSLSKEFPDSR 65 (118)
Q Consensus 44 ~~~N~~L~~~l~~l~~~~p~~~ 65 (118)
..+|.+|..++++++.-+|...
T Consensus 11 ~~~~sql~~Mve~V~~mFPqv~ 32 (58)
T 4g3o_A 11 LYFQGQLNAMAHQIQEMFPQVP 32 (58)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSC
T ss_pred HhhhHHHHHHHHHHHHHcCCCC
Confidence 3789999999999999888653
No 45
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=32.02 E-value=56 Score=20.98 Aligned_cols=27 Identities=11% Similarity=0.452 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhhhccCCCcEEEEEe
Q 048377 44 QIYNSKLQSVVDSLSKEFPDSRFVYFD 70 (118)
Q Consensus 44 ~~~N~~L~~~l~~l~~~~p~~~i~~~D 70 (118)
..|-..|+++++.+++..|++.|++.-
T Consensus 92 ~~~~~~l~~ii~~l~~~~p~~~ii~~~ 118 (200)
T 4h08_A 92 EEYDKSFPKLIKIIRKYAPKAKLIWAN 118 (200)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEEEC
T ss_pred HHHHHHHHHHHHHHhhhCCCccEEEec
Confidence 456678889999999999999998764
No 46
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=31.53 E-value=51 Score=18.74 Aligned_cols=21 Identities=5% Similarity=0.034 Sum_probs=15.0
Q ss_pred HHHhhhccCCCcEEEEEeccH
Q 048377 53 VVDSLSKEFPDSRFVYFDIYN 73 (118)
Q Consensus 53 ~l~~l~~~~p~~~i~~~D~~~ 73 (118)
.+.++..++++..++.+|...
T Consensus 39 ~~~~~~~~~~~~~~~~vd~~~ 59 (105)
T 4euy_A 39 KVNYVLENYNYVEKIEILLQD 59 (105)
T ss_dssp HHHHHHHTCTTEEEEEEEECC
T ss_pred HHHHHHHHcCCceEEEEECCC
Confidence 345556667889999998753
No 47
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=31.30 E-value=50 Score=18.45 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=15.0
Q ss_pred HHHhhhccCCCcEEEEEeccH
Q 048377 53 VVDSLSKEFPDSRFVYFDIYN 73 (118)
Q Consensus 53 ~l~~l~~~~p~~~i~~~D~~~ 73 (118)
.+.++.+++++..++.+|...
T Consensus 41 ~~~~~~~~~~~~~~~~vd~~~ 61 (105)
T 3m9j_A 41 FFHSLSEKYSNVIFLEVDVDD 61 (105)
T ss_dssp HHHHHHHHSTTSEEEEEETTT
T ss_pred HHHHHHHHccCeEEEEEEhhh
Confidence 344455567789999999864
No 48
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=31.24 E-value=51 Score=19.03 Aligned_cols=21 Identities=19% Similarity=0.646 Sum_probs=15.1
Q ss_pred HHHhhhccCCCcEEEEEeccH
Q 048377 53 VVDSLSKEFPDSRFVYFDIYN 73 (118)
Q Consensus 53 ~l~~l~~~~p~~~i~~~D~~~ 73 (118)
.+.++.+++++..++.+|...
T Consensus 45 ~l~~l~~~~~~~~~~~vd~~~ 65 (109)
T 3f3q_A 45 MIEKFSEQYPQADFYKLDVDE 65 (109)
T ss_dssp HHHHHHHHCTTSEEEEEETTT
T ss_pred HHHHHHHHCCCCEEEEEECCC
Confidence 345555567789999999864
No 49
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Probab=30.14 E-value=90 Score=23.23 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=12.9
Q ss_pred hhhcCCcEEEEeCCCc
Q 048377 2 LYGVGARRIGVLSLPP 17 (118)
Q Consensus 2 Ly~~GAr~f~v~~lpp 17 (118)
|.+.|+++++|+-+-|
T Consensus 118 l~~~G~~~ivvlPlyP 133 (362)
T 1lbq_A 118 MLKDGVKKAVAFSQYP 133 (362)
T ss_dssp HHTTTCCEEEEEESCS
T ss_pred HHHcCCCeEEEEecch
Confidence 5678999999986655
No 50
>2wao_A Endoglucanase E; plant cell WALL degradation, carbohydrate metabolism, polysaccharide degradation, esterase, hydrolase, cellulases; HET: BGC; 1.80A {Clostridium thermocellum} PDB: 2wab_A*
Probab=29.75 E-value=57 Score=23.42 Aligned_cols=28 Identities=7% Similarity=0.367 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhhhccCCCcEEEEEe
Q 048377 43 AQIYNSKLQSVVDSLSKEFPDSRFVYFD 70 (118)
Q Consensus 43 ~~~~N~~L~~~l~~l~~~~p~~~i~~~D 70 (118)
.+.|-..+..+++++++++|+++|+++-
T Consensus 233 ~~~~~~~l~~li~~ir~~~p~a~Iil~~ 260 (341)
T 2wao_A 233 KTKFVTAYKNLISEVRRNYPDAHIFCCV 260 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 3567788999999999999999999875
No 51
>4hl7_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative; 1.80A {Vibrio cholerae}
Probab=29.54 E-value=47 Score=25.73 Aligned_cols=34 Identities=12% Similarity=0.010 Sum_probs=23.4
Q ss_pred HHHHHHH-------HHHHHHHHHhhhccCCCc-EEEEEeccHH
Q 048377 40 NQAAQIY-------NSKLQSVVDSLSKEFPDS-RFVYFDIYNP 74 (118)
Q Consensus 40 n~~~~~~-------N~~L~~~l~~l~~~~p~~-~i~~~D~~~~ 74 (118)
.++++.| +.. ..++..+.+.+|+. .+++.|+|+.
T Consensus 232 H~~i~~~~al~~~~~~e-~~Af~~~~~~yp~~~~i~LvDTy~~ 273 (446)
T 4hl7_A 232 HEWFMGHQALVNERDSQ-QVALERWLTAFDGMLAIAPTDTLTI 273 (446)
T ss_dssp HHHHHHHHHHSCGGGHH-HHHHHHHHHHCSSCCCEEESCSSCH
T ss_pred hHHHHHhhcccccCCCH-HHHHHHHHHHCCCCCeEEEEEeCCc
Confidence 3456666 333 34567777788875 5999999986
No 52
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=29.44 E-value=49 Score=22.73 Aligned_cols=27 Identities=26% Similarity=0.513 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhhccCCCcEEEEEec
Q 048377 45 IYNSKLQSVVDSLSKEFPDSRFVYFDI 71 (118)
Q Consensus 45 ~~N~~L~~~l~~l~~~~p~~~i~~~D~ 71 (118)
.|=..|+.+++.+++..|+++|+++-.
T Consensus 142 ~~~~~l~~li~~lr~~~p~a~Iilitp 168 (274)
T 3bzw_A 142 TYRGRINIGITQLKKLFPDKQIVLLTP 168 (274)
T ss_dssp SHHHHHHHHHHHHHHHCTTSEEEEECC
T ss_pred HHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 355678889999999999999998654
No 53
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=28.73 E-value=34 Score=18.66 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=14.5
Q ss_pred HHHHhhhccCCCcEEEEEeccH
Q 048377 52 SVVDSLSKEFPDSRFVYFDIYN 73 (118)
Q Consensus 52 ~~l~~l~~~~p~~~i~~~D~~~ 73 (118)
..|.++..++++..+..+|+..
T Consensus 19 ~~l~~l~~~~~~i~~~~vdi~~ 40 (85)
T 1ego_A 19 DLAEKLSNERDDFQYQYVDIRA 40 (85)
T ss_dssp HHHHHHHHHHSSCEEEEECHHH
T ss_pred HHHHHHHhcCCCceEEEEeccc
Confidence 3344454455688999999854
No 54
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=28.65 E-value=60 Score=18.36 Aligned_cols=20 Identities=25% Similarity=0.584 Sum_probs=14.1
Q ss_pred HHhhhccCCCcEEEEEeccH
Q 048377 54 VDSLSKEFPDSRFVYFDIYN 73 (118)
Q Consensus 54 l~~l~~~~p~~~i~~~D~~~ 73 (118)
+.++.+++++..++.+|...
T Consensus 43 ~~~~~~~~~~~~~~~vd~~~ 62 (107)
T 1gh2_A 43 FSSMSNKYPQAVFLEVDVHQ 62 (107)
T ss_dssp HHHHHHHCTTSEEEEEETTT
T ss_pred HHHHHHHCCCcEEEEEECcc
Confidence 34455556789999999864
No 55
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=27.77 E-value=65 Score=17.85 Aligned_cols=18 Identities=33% Similarity=0.639 Sum_probs=12.9
Q ss_pred hhhccCCCcEEEEEeccH
Q 048377 56 SLSKEFPDSRFVYFDIYN 73 (118)
Q Consensus 56 ~l~~~~p~~~i~~~D~~~ 73 (118)
++..++++..++.+|...
T Consensus 43 ~~~~~~~~~~~~~v~~~~ 60 (104)
T 2vim_A 43 ALAKEIPEVEFAKVDVDQ 60 (104)
T ss_dssp HHHHHCTTSEEEEEETTT
T ss_pred HHHHHCCCCEEEEEeccC
Confidence 344456689999999864
No 56
>2w9x_A AXE2A, CJCE2B, putative acetyl xylan esterase; carbohydrate esterase family 2, hydrolase; 2.00A {Cellvibrio japonicus}
Probab=27.32 E-value=82 Score=22.93 Aligned_cols=28 Identities=14% Similarity=0.284 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhhhccCCCcEEEEEe
Q 048377 43 AQIYNSKLQSVVDSLSKEFPDSRFVYFD 70 (118)
Q Consensus 43 ~~~~N~~L~~~l~~l~~~~p~~~i~~~D 70 (118)
.+.|=..|+++++.+++++|+++|++.-
T Consensus 266 ~~~~~~~l~~li~~ir~~~p~a~Iil~~ 293 (366)
T 2w9x_A 266 HADYVANYVKFVKQLHSNNARAQFILMN 293 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 4677788999999999999999998775
No 57
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=26.56 E-value=65 Score=18.87 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=15.7
Q ss_pred HHHHhhhccCCCcEEEEEeccH
Q 048377 52 SVVDSLSKEFPDSRFVYFDIYN 73 (118)
Q Consensus 52 ~~l~~l~~~~p~~~i~~~D~~~ 73 (118)
..+.++..++++..++.+|+..
T Consensus 40 p~~~~~~~~~~~~~~~~vd~d~ 61 (105)
T 3zzx_A 40 PKLEELSQSMSDVVFLKVDVDE 61 (105)
T ss_dssp HHHHHHHHHCTTEEEEEEETTT
T ss_pred cchhhhhhccCCeEEEEEeccc
Confidence 3344556667899999999854
No 58
>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia pestis}
Probab=26.52 E-value=69 Score=24.41 Aligned_cols=24 Identities=13% Similarity=0.246 Sum_probs=18.3
Q ss_pred HHHHHhhhccCCCc-EEEEEeccHH
Q 048377 51 QSVVDSLSKEFPDS-RFVYFDIYNP 74 (118)
Q Consensus 51 ~~~l~~l~~~~p~~-~i~~~D~~~~ 74 (118)
..+++.+.+.+|+. .+++.|+|+.
T Consensus 239 ~~Af~~~~~~yp~~~~i~LvDTy~~ 263 (407)
T 3os4_A 239 RVALQVWLDEYPNQLGIALTDCITM 263 (407)
T ss_dssp HHHHHHHHHHCSSSSCEEECCSSCH
T ss_pred HHHHHHHHHHCCCCCEEEEEeecCh
Confidence 44566777788875 6999999986
No 59
>4ev1_A Anabena TIC22; TIC22 fold, chaperon, protein transport, TIC22-like family, thylakoids, chaperone; HET: NHE; 1.95A {Anabaena SP}
Probab=26.51 E-value=1.1e+02 Score=21.83 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=28.2
Q ss_pred HHHHHHHhhhccCCCcEEEEEeccHHHHHHHHCC
Q 048377 49 KLQSVVDSLSKEFPDSRFVYFDIYNPLNSLIQNP 82 (118)
Q Consensus 49 ~L~~~l~~l~~~~p~~~i~~~D~~~~~~~i~~nP 82 (118)
.|..++++++++.|+.+|-.+|...++..+-..-
T Consensus 167 dL~~~l~~~kkq~P~~~I~V~~Le~vI~~m~~~~ 200 (252)
T 4ev1_A 167 DAQGLLGQVKPKHPKADIQVLDIDGVLQTLQDKN 200 (252)
T ss_dssp HHHHHHHHHTTTCTTCEEEEEEHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCCCCcEEEeeHHHHHHHHhcCc
Confidence 4566788898889999999999999999866553
No 60
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=26.33 E-value=69 Score=18.36 Aligned_cols=19 Identities=21% Similarity=0.405 Sum_probs=13.7
Q ss_pred HhhhccCCCcEEEEEeccH
Q 048377 55 DSLSKEFPDSRFVYFDIYN 73 (118)
Q Consensus 55 ~~l~~~~p~~~i~~~D~~~ 73 (118)
.++..+++++.++.+|...
T Consensus 49 ~~l~~~~~~v~~~~vd~~~ 67 (112)
T 1syr_A 49 EECSKTYTKMVFIKVDVDE 67 (112)
T ss_dssp HHHHHHCTTSEEEEEETTT
T ss_pred HHHHHHcCCCEEEEEECCC
Confidence 4444456789999999865
No 61
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=26.32 E-value=67 Score=21.50 Aligned_cols=22 Identities=23% Similarity=0.532 Sum_probs=16.8
Q ss_pred HHHHhhhccCCCcEEEEEeccH
Q 048377 52 SVVDSLSKEFPDSRFVYFDIYN 73 (118)
Q Consensus 52 ~~l~~l~~~~p~~~i~~~D~~~ 73 (118)
..++.+++++||..+.++|.+.
T Consensus 28 ~~~~~~~~~~~g~ev~~~dL~~ 49 (211)
T 3p0r_A 28 AFLASYKEAHPNDTVVELDLYK 49 (211)
T ss_dssp HHHHHHHHHCTTSEEEEEEGGG
T ss_pred HHHHHHHHhCCCCeEEEEECCC
Confidence 3455666678899999999875
No 62
>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural genomics, protein structure initiative, hypothetical protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa} SCOP: c.1.17.2 d.41.2.2
Probab=25.94 E-value=55 Score=24.87 Aligned_cols=25 Identities=12% Similarity=0.165 Sum_probs=18.8
Q ss_pred HHHHHhhhccCCCc-EEEEEeccHHH
Q 048377 51 QSVVDSLSKEFPDS-RFVYFDIYNPL 75 (118)
Q Consensus 51 ~~~l~~l~~~~p~~-~i~~~D~~~~~ 75 (118)
..++..+.+.+|+. .+++.|+|+.-
T Consensus 244 ~~A~~~~~~~~p~~~~i~LvDTyd~~ 269 (408)
T 1yir_A 244 SAALDCWVREYRGLLGIALTDCITTD 269 (408)
T ss_dssp HHHHHHHHHHHTTSSCEEESCSSCHH
T ss_pred HHHHHHHHHHcCCCCeEEEEEeCCcH
Confidence 34566777778864 79999999883
No 63
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=25.83 E-value=74 Score=17.43 Aligned_cols=19 Identities=16% Similarity=0.450 Sum_probs=13.3
Q ss_pred HhhhccCCCcEEEEEeccH
Q 048377 55 DSLSKEFPDSRFVYFDIYN 73 (118)
Q Consensus 55 ~~l~~~~p~~~i~~~D~~~ 73 (118)
.++.+++++..++.+|...
T Consensus 39 ~~~~~~~~~~~~~~v~~~~ 57 (104)
T 2e0q_A 39 EELAEDYPQVGFGKLNSDE 57 (104)
T ss_dssp HHHHHHCTTSEEEEEETTT
T ss_pred HHHHHHcCCceEEEEECCC
Confidence 3444556679999999764
No 64
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=25.73 E-value=69 Score=20.41 Aligned_cols=41 Identities=17% Similarity=0.067 Sum_probs=29.1
Q ss_pred HHHHHHHHhhhccCCCcEEEEE--eccHHHHHHHHCCCCCCCc
Q 048377 48 SKLQSVVDSLSKEFPDSRFVYF--DIYNPLNSLIQNPPQYGFE 88 (118)
Q Consensus 48 ~~L~~~l~~l~~~~p~~~i~~~--D~~~~~~~i~~nP~~yGf~ 88 (118)
..|...+.++++++|+.++.+. +...+...+.+.--..||.
T Consensus 24 ~~l~~~l~~~~~~~P~v~i~~~~~~~~~~~~~l~~g~~Dl~i~ 66 (232)
T 3ho7_A 24 YLLPRVFPIWKKELAGLEIHVSEMQTSRCLASLLSGEIDMAII 66 (232)
T ss_dssp HHHHHHHHHHHHHSTTEEEEEEECCHHHHHHHHHHTSCSEEEE
T ss_pred hhhHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHcCCCCEEEE
Confidence 3566778888889999888775 5666677777765555553
No 65
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=25.47 E-value=1e+02 Score=19.74 Aligned_cols=29 Identities=7% Similarity=0.060 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhhhccC-------CCcEEEEEec
Q 048377 43 AQIYNSKLQSVVDSLSKEF-------PDSRFVYFDI 71 (118)
Q Consensus 43 ~~~~N~~L~~~l~~l~~~~-------p~~~i~~~D~ 71 (118)
...|-..|+++++.+++.. |+++|+++-.
T Consensus 104 ~~~~~~~l~~li~~~~~~~~~~~~~~P~~~iil~~~ 139 (216)
T 2q0q_A 104 PLDIALGMSVLVTQVLTSAGGVGTTYPAPKVLVVSP 139 (216)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTTTBCCCCCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCCeEEEEeC
Confidence 3456678888999999888 8899998843
No 66
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=25.26 E-value=75 Score=18.06 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=13.3
Q ss_pred HhhhccCCCcEEEEEecc
Q 048377 55 DSLSKEFPDSRFVYFDIY 72 (118)
Q Consensus 55 ~~l~~~~p~~~i~~~D~~ 72 (118)
.++.+++++..++.+|..
T Consensus 47 ~~~~~~~~~v~~~~vd~~ 64 (111)
T 2pu9_C 47 EKLAEEYLDVIFLKLDCN 64 (111)
T ss_dssp HHHHHHCTTSEEEEEECS
T ss_pred HHHHHHCCCeEEEEEecC
Confidence 444555678999999986
No 67
>3no4_A Creatininase, creatinine amidohydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.00A {Nostoc punctiforme pcc 73102}
Probab=25.00 E-value=26 Score=25.10 Aligned_cols=15 Identities=13% Similarity=0.067 Sum_probs=13.0
Q ss_pred hhhcCCcEEEEeCCC
Q 048377 2 LYGVGARRIGVLSLP 16 (118)
Q Consensus 2 Ly~~GAr~f~v~~lp 16 (118)
|+..|.|||+++|=.
T Consensus 115 l~~~G~~~iv~vNgH 129 (267)
T 3no4_A 115 LAKAGFSKFYFINGH 129 (267)
T ss_dssp HHHHTCCEEEEEECC
T ss_pred HHHcCCCEEEEEECC
Confidence 678999999999854
No 68
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=24.87 E-value=74 Score=17.99 Aligned_cols=19 Identities=32% Similarity=0.662 Sum_probs=13.1
Q ss_pred HhhhccCCCcEEEEEeccH
Q 048377 55 DSLSKEFPDSRFVYFDIYN 73 (118)
Q Consensus 55 ~~l~~~~p~~~i~~~D~~~ 73 (118)
.++.+++++..++.+|...
T Consensus 49 ~~~~~~~~~v~~~~v~~~~ 67 (113)
T 1ti3_A 49 AELAKKFPNVTFLKVDVDE 67 (113)
T ss_dssp HHHHHHCSSEEEEEEETTT
T ss_pred HHHHHhCCCcEEEEEEccc
Confidence 3444456689999998754
No 69
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli}
Probab=24.08 E-value=97 Score=22.11 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=12.1
Q ss_pred HHHHHHHhhhccCCCcEEEEE
Q 048377 49 KLQSVVDSLSKEFPDSRFVYF 69 (118)
Q Consensus 49 ~L~~~l~~l~~~~p~~~i~~~ 69 (118)
.++++++++.++||+++|.+.
T Consensus 21 ~~~~~i~~F~~~~p~i~V~~~ 41 (419)
T 4aq4_A 21 EVDSLAQRFNAENPDYKIVPT 41 (419)
T ss_dssp HHHHHHHHHHHHCTTEEEEEE
T ss_pred HHHHHHHHHHHHCcCeEEEEE
Confidence 344555566666677666543
No 70
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=23.94 E-value=81 Score=18.24 Aligned_cols=20 Identities=30% Similarity=0.640 Sum_probs=14.3
Q ss_pred HHhhhccCCCcEEEEEeccH
Q 048377 54 VDSLSKEFPDSRFVYFDIYN 73 (118)
Q Consensus 54 l~~l~~~~p~~~i~~~D~~~ 73 (118)
+.++.+++++..++.+|...
T Consensus 56 l~~~~~~~~~~~~~~vd~~~ 75 (122)
T 2vlu_A 56 FADLAKKFPNAVFLKVDVDE 75 (122)
T ss_dssp HHHHHHHCTTSEEEEEETTT
T ss_pred HHHHHHHCCCcEEEEEECCC
Confidence 34455567789999999864
No 71
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=23.86 E-value=82 Score=17.93 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=14.1
Q ss_pred HHhhhccCCCcEEEEEeccH
Q 048377 54 VDSLSKEFPDSRFVYFDIYN 73 (118)
Q Consensus 54 l~~l~~~~p~~~i~~~D~~~ 73 (118)
+.++.+++++..++.+|...
T Consensus 50 l~~~~~~~~~~~~~~v~~~~ 69 (118)
T 2vm1_A 50 FAEYAKKFPGAIFLKVDVDE 69 (118)
T ss_dssp HHHHHHHCTTSEEEEEETTT
T ss_pred HHHHHHHCCCcEEEEEEccc
Confidence 34455556789999999864
No 72
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=23.84 E-value=80 Score=20.11 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=26.7
Q ss_pred HHHHHHHHhhhccCCCcEEEEE--eccHHHHHHHHCCCCCCC
Q 048377 48 SKLQSVVDSLSKEFPDSRFVYF--DIYNPLNSLIQNPPQYGF 87 (118)
Q Consensus 48 ~~L~~~l~~l~~~~p~~~i~~~--D~~~~~~~i~~nP~~yGf 87 (118)
..|...+.++++++|++++.+. +...+...+.+.--..||
T Consensus 18 ~~l~~~l~~f~~~~P~v~l~l~~~~~~~~~~~l~~g~~Dl~i 59 (219)
T 1i6a_A 18 YLLPHIIPMLHQTFPKLEMYLHEAQTHQLLAQLDSGKLDAVI 59 (219)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHHTSCSEEE
T ss_pred hhhhHHHHHHHHHCCCeEEEEEECChHHHHHHHHcCCeeEEE
Confidence 4567788889999999888775 344555555555444444
No 73
>4i3s_G Outer domain of HIV-1 GP120 (KER2018 OD4.2.2); antibody affinity, antibody specificity, binding sites, HIV infections, antibodies, HIV envelope protein GP120; 2.85A {Human immunodeficiency virus} PDB: 4i3r_G
Probab=23.78 E-value=77 Score=21.67 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhhhccCCCcEEEE
Q 048377 44 QIYNSKLQSVVDSLSKEFPDSRFVY 68 (118)
Q Consensus 44 ~~~N~~L~~~l~~l~~~~p~~~i~~ 68 (118)
..||..|++..++|++.+ .-+|++
T Consensus 60 ~~Wn~tL~~V~~kL~e~f-n~tI~F 83 (190)
T 4i3s_G 60 TQWNDTLGQVAIQLRKHW-NTCIIF 83 (190)
T ss_dssp HHHHHHHHHHHHHHTTTS-CSCEEE
T ss_pred HHhhhhHHHHHHHHHHhc-cCcccc
Confidence 589999999999999877 544443
No 74
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=23.65 E-value=70 Score=20.03 Aligned_cols=40 Identities=15% Similarity=0.041 Sum_probs=27.8
Q ss_pred HHHHHHHHhhhccCCCcEEEEE--eccHHHHHHHHCCCCCCC
Q 048377 48 SKLQSVVDSLSKEFPDSRFVYF--DIYNPLNSLIQNPPQYGF 87 (118)
Q Consensus 48 ~~L~~~l~~l~~~~p~~~i~~~--D~~~~~~~i~~nP~~yGf 87 (118)
..|...+.++++++|+.++.+. +...+...+.+.--..||
T Consensus 17 ~~l~~~l~~~~~~~P~i~i~i~~~~~~~~~~~l~~g~~Dl~i 58 (219)
T 3jv9_A 17 YLLPKLIVSLRRTAPKMPLMLEENYTHTLTESLKRGDVDAII 58 (219)
T ss_dssp HHHHHHHHHHHHHSTTCCEEEEEECHHHHHHHHHHTSSSEEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCCcHHHHHHHHcCCCCEEE
Confidence 4567778889999998877664 556666677666555554
No 75
>3tyg_A Envelope glycoprotein GP160; GP120, HIV-1, ENV, FAB, HIV-1 neutralizing antibody, immune viral protein; HET: NAG BMA MAN; 3.25A {Human immunodeficiency virus 1}
Probab=23.54 E-value=76 Score=21.86 Aligned_cols=25 Identities=16% Similarity=0.537 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhhhccC-CCcEEEE
Q 048377 44 QIYNSKLQSVVDSLSKEF-PDSRFVY 68 (118)
Q Consensus 44 ~~~N~~L~~~l~~l~~~~-p~~~i~~ 68 (118)
..||..|++..++|++.+ +.-+|++
T Consensus 125 t~Wn~tL~qV~~kL~e~f~~nktI~F 150 (199)
T 3tyg_A 125 AKWNNTLKQIASKLREQFGNNKTIIF 150 (199)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred HHHHHHHHHHHHHHHHhccCCceEEe
Confidence 689999999999999888 3555544
No 76
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=23.17 E-value=88 Score=17.94 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=15.3
Q ss_pred HHHhhhccCCCcEEEEEeccH
Q 048377 53 VVDSLSKEFPDSRFVYFDIYN 73 (118)
Q Consensus 53 ~l~~l~~~~p~~~i~~~D~~~ 73 (118)
.+.++..++++..++.+|...
T Consensus 40 ~l~~~~~~~~~v~~~~vd~~~ 60 (110)
T 2l6c_A 40 VLDKFGARAPQVAISSVDSEA 60 (110)
T ss_dssp HHHHHHTTCTTSCEEEEEGGG
T ss_pred HHHHHHHHCCCcEEEEEcCcC
Confidence 345566667889999999754
No 77
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=23.12 E-value=85 Score=18.24 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=14.6
Q ss_pred HHhhhccCCCcEEEEEeccH
Q 048377 54 VDSLSKEFPDSRFVYFDIYN 73 (118)
Q Consensus 54 l~~l~~~~p~~~i~~~D~~~ 73 (118)
+.++.+++++..++.+|...
T Consensus 59 l~~~~~~~~~~~~~~vd~~~ 78 (124)
T 1faa_A 59 YEKLAEEYLDVIFLKLDCNQ 78 (124)
T ss_dssp HHHHHHHCTTSEEEEEECSS
T ss_pred HHHHHHHCCCCEEEEEecCc
Confidence 44555567789999999863
No 78
>2waa_A Acetyl esterase, xylan esterase, putative, AXE2C; carbohydrate binding, plant cell WALL degradation, hydrolase, cellulases; 1.80A {Cellvibrio japonicus}
Probab=23.08 E-value=74 Score=22.97 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhhhccCCCcEEEEEe
Q 048377 43 AQIYNSKLQSVVDSLSKEFPDSRFVYFD 70 (118)
Q Consensus 43 ~~~~N~~L~~~l~~l~~~~p~~~i~~~D 70 (118)
...|=..++.+++.+++++|+++|+++-
T Consensus 245 ~~~~~~~l~~li~~ir~~~p~~~I~l~~ 272 (347)
T 2waa_A 245 RATYINTYTRFVRTLLDNHPQATIVLTE 272 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 3567788999999999999999999875
No 79
>3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49}
Probab=22.61 E-value=35 Score=25.67 Aligned_cols=52 Identities=17% Similarity=0.316 Sum_probs=30.8
Q ss_pred hhhcCCcEEEEeCCCccCchhhhhhhcCCCCCCchHHHHHHHHHHH--HHHHHHHHhhhccCCCcEEEEEec
Q 048377 2 LYGVGARRIGVLSLPPIGCVPVQRTLNGGIARGCSDFANQAAQIYN--SKLQSVVDSLSKEFPDSRFVYFDI 71 (118)
Q Consensus 2 Ly~~GAr~f~v~~lpplgc~P~~~~~~~~~~~~c~~~~n~~~~~~N--~~L~~~l~~l~~~~p~~~i~~~D~ 71 (118)
+.++|.+.|+++++++ |......+ +.+|| ..+..++..+++++|+. +++.|+
T Consensus 82 ~~~lGi~av~LFgv~~----p~~KD~~g-------------s~A~~~~g~v~rAir~iK~~~P~l-~VitDV 135 (356)
T 3obk_A 82 ARSYGIKAFMLFPKVD----DELKSVMA-------------EESYNPDGLLPRAIMALKEAFPDV-LLLADV 135 (356)
T ss_dssp HHHTTCCEEEEEEECC----GGGCBSSC-------------GGGGCTTSHHHHHHHHHHHHSTTC-EEEEEE
T ss_pred HHHCCCCEEEEecCCC----cccCCccc-------------ccccCCCChHHHHHHHHHHHCCCC-EEEEee
Confidence 6789999999998742 21111111 11222 24566677788888884 455554
No 80
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=22.56 E-value=1.1e+02 Score=20.10 Aligned_cols=29 Identities=7% Similarity=0.061 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhhhccC-----CCcEEEEEec
Q 048377 43 AQIYNSKLQSVVDSLSKEF-----PDSRFVYFDI 71 (118)
Q Consensus 43 ~~~~N~~L~~~l~~l~~~~-----p~~~i~~~D~ 71 (118)
...|=..|+.+++.+++.. |+++|+++-.
T Consensus 122 ~~~~~~~l~~li~~ir~~~~~~~~p~~~iil~~p 155 (232)
T 3dci_A 122 AEAAVSGMRRLAQIVETFIYKPREAVPKLLIVAP 155 (232)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSTTCCCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCeEEEEeC
Confidence 3456677888889998877 8999999853
No 81
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=21.26 E-value=62 Score=21.40 Aligned_cols=37 Identities=11% Similarity=0.160 Sum_probs=24.7
Q ss_pred HHHHHHHhhhccCCC-cEEEEEeccHHHHHHHHCCCCCCCcc
Q 048377 49 KLQSVVDSLSKEFPD-SRFVYFDIYNPLNSLIQNPPQYGFEV 89 (118)
Q Consensus 49 ~L~~~l~~l~~~~p~-~~i~~~D~~~~~~~i~~nP~~yGf~~ 89 (118)
.+...+++|+.++++ +.|+.+|+-.. -+=.+.||...
T Consensus 58 ~m~PvleelA~e~~~~v~f~kVDVDe~----~e~a~~y~V~s 95 (160)
T 2av4_A 58 KMDELLYKVADDIKNFCVIYLVDITEV----PDFNTMYELYD 95 (160)
T ss_dssp HHHHHHHHHHHHHTTTEEEEEEETTTC----CTTTTTTTCCS
T ss_pred HHHHHHHHHHHHccCCcEEEEEECCCC----HHHHHHcCCCC
Confidence 455566777777765 89999999642 22345777653
No 82
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=21.16 E-value=93 Score=18.42 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=13.9
Q ss_pred HHhhhccCCCcEEEEEeccH
Q 048377 54 VDSLSKEFPDSRFVYFDIYN 73 (118)
Q Consensus 54 l~~l~~~~p~~~i~~~D~~~ 73 (118)
+.++.++++++.++.+|...
T Consensus 60 l~~l~~~~~~v~~~~vd~d~ 79 (124)
T 1xfl_A 60 FADLAKKLPNVLFLKVDTDE 79 (124)
T ss_dssp HHHHHHHCSSEEEEEEETTT
T ss_pred HHHHHHHCCCcEEEEEECcc
Confidence 34455556789999998754
No 83
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=20.80 E-value=78 Score=18.95 Aligned_cols=19 Identities=32% Similarity=0.606 Sum_probs=13.6
Q ss_pred HhhhccCCCcEEEEEeccH
Q 048377 55 DSLSKEFPDSRFVYFDIYN 73 (118)
Q Consensus 55 ~~l~~~~p~~~i~~~D~~~ 73 (118)
.++.++++++.|+.+|...
T Consensus 60 ~~l~~~~~~v~~~~vd~d~ 78 (125)
T 1r26_A 60 EKIAYEFPTVKFAKVDADN 78 (125)
T ss_dssp HHHHHHCTTSEEEEEETTT
T ss_pred HHHHHHCCCCEEEEEECCC
Confidence 3444456789999999864
No 84
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=20.56 E-value=1e+02 Score=18.38 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=15.2
Q ss_pred HHHhhhccCCCcEEEEEeccH
Q 048377 53 VVDSLSKEFPDSRFVYFDIYN 73 (118)
Q Consensus 53 ~l~~l~~~~p~~~i~~~D~~~ 73 (118)
.+.++..+++++.|+.+|...
T Consensus 67 ~l~~l~~~~~~v~~~~v~~~~ 87 (139)
T 3d22_A 67 YYIELSENYPSLMFLVIDVDE 87 (139)
T ss_dssp HHHHHHHHCTTSEEEEEETTT
T ss_pred HHHHHHHHCCCCEEEEEeCcc
Confidence 345555567789999999864
No 85
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=20.26 E-value=83 Score=18.34 Aligned_cols=20 Identities=35% Similarity=0.669 Sum_probs=14.0
Q ss_pred HHhhhccCCCcEEEEEeccH
Q 048377 54 VDSLSKEFPDSRFVYFDIYN 73 (118)
Q Consensus 54 l~~l~~~~p~~~i~~~D~~~ 73 (118)
+.++.++++++.++.+|...
T Consensus 52 l~~~~~~~~~v~~~~vd~~~ 71 (114)
T 2oe3_A 52 LTKLIQAYPDVRFVKCDVDE 71 (114)
T ss_dssp HHHHHHHCTTSEEEEEETTT
T ss_pred HHHHHHHCCCCEEEEEECCC
Confidence 34455566779999999764
Done!