BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048380
         (250 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9
          Length = 101

 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 116 AWCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYY-HKN 174
           +WC+  P  S+  L   ++YAC  G  DC  IQPG +C+ PNT+  HA+Y  N YY H  
Sbjct: 12  SWCVPKPGVSDDQLTGNINYACSQG-IDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHAG 70

Query: 175 PAPTSCVFGGAAQLTYTDPS 194
               +C F   A LT T+PS
Sbjct: 71  RNSWNCDFSQTATLTNTNPS 90


>pdb|1TXN|A Chain A, Crystal Structure Of Coproporphyrinogen Iii Oxidase
 pdb|1TXN|B Chain B, Crystal Structure Of Coproporphyrinogen Iii Oxidase
          Length = 328

 Score = 32.7 bits (73), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 18/105 (17%)

Query: 122 PSASETGLQVALD---YACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHKNPAPT 178
           P   +TGL V      +ACG        I P     NP+    H +Y + + ++++  P 
Sbjct: 96  PEDPKTGLPVTDGVKFFACGL----SXVIHP----VNPHAPTTHLNYRYFETWNQDGTPQ 147

Query: 179 SCVFGGAAQLTYTDPSKLCSSERNNQLYEFSSTYLDTIQTHLDSL 223
           +  FGG A LT   PS L   E + QL  F   + D +  H  +L
Sbjct: 148 TWWFGGGADLT---PSYLY--EEDGQL--FHQLHKDALDKHDTAL 185


>pdb|1TKL|A Chain A, Yeast Oxygen-Dependent Coproporphyrinogen Oxidase
 pdb|1TKL|B Chain B, Yeast Oxygen-Dependent Coproporphyrinogen Oxidase
 pdb|1TLB|A Chain A, Yeast Coproporphyrinogen Oxidase
 pdb|1TLB|D Chain D, Yeast Coproporphyrinogen Oxidase
 pdb|1TLB|Q Chain Q, Yeast Coproporphyrinogen Oxidase
 pdb|1TLB|S Chain S, Yeast Coproporphyrinogen Oxidase
 pdb|1TLB|U Chain U, Yeast Coproporphyrinogen Oxidase
 pdb|1TLB|W Chain W, Yeast Coproporphyrinogen Oxidase
          Length = 326

 Score = 32.7 bits (73), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 18/105 (17%)

Query: 122 PSASETGLQVALD---YACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHKNPAPT 178
           P   +TGL V      +ACG        I P     NP+    H +Y + + ++++  P 
Sbjct: 94  PEDPKTGLPVTDGVKFFACGL----SMVIHP----VNPHAPTTHLNYRYFETWNQDGTPQ 145

Query: 179 SCVFGGAAQLTYTDPSKLCSSERNNQLYEFSSTYLDTIQTHLDSL 223
           +  FGG A LT   PS L   E + QL  F   + D +  H  +L
Sbjct: 146 TWWFGGGADLT---PSYLY--EEDGQL--FHQLHKDALDKHDTAL 183


>pdb|1TK1|A Chain A, Yeast Oxygen-Dependent Coproporphyrinogen Oxidase
          Length = 260

 Score = 32.3 bits (72), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 18/105 (17%)

Query: 122 PSASETGLQVALD---YACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHKNPAPT 178
           P   +TGL V      +ACG        I P     NP+    H +Y + + ++++  P 
Sbjct: 91  PEDPKTGLPVTDGVKFFACGL----SMVIHP----VNPHAPTTHLNYRYFETWNQDGTPQ 142

Query: 179 SCVFGGAAQLTYTDPSKLCSSERNNQLYEFSSTYLDTIQTHLDSL 223
           +  FGG A LT   PS L   E + QL  F   + D +  H  +L
Sbjct: 143 TWWFGGGADLT---PSYLY--EEDGQL--FHQLHKDALDKHDTAL 180


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.128    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,232,096
Number of Sequences: 62578
Number of extensions: 183978
Number of successful extensions: 363
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 360
Number of HSP's gapped (non-prelim): 4
length of query: 250
length of database: 14,973,337
effective HSP length: 96
effective length of query: 154
effective length of database: 8,965,849
effective search space: 1380740746
effective search space used: 1380740746
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)