BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048381
(135 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HFJ|A Chain A, X-ray Crystal Structure Of A Double Bond Reductase From
Nicotiana Tabacum
pdb|4HFJ|B Chain B, X-ray Crystal Structure Of A Double Bond Reductase From
Nicotiana Tabacum
pdb|4HFM|A Chain A, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond
Reductase From Nicotiana Tabacum
pdb|4HFM|B Chain B, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond
Reductase From Nicotiana Tabacum
pdb|4HFN|A Chain A, X-ray Crystal Structure Of A Ternary Complex Of Double
Bond Reductase From Nicotiana Tabacum
pdb|4HFN|B Chain B, X-ray Crystal Structure Of A Ternary Complex Of Double
Bond Reductase From Nicotiana Tabacum
Length = 351
Score = 180 bits (456), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 89/143 (62%), Positives = 108/143 (75%), Gaps = 8/143 (5%)
Query: 1 MYLTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKHEDN--------GPIEGFGVAR 52
M + + T+ LKV EGSN V VKNLYLSCDPY R M K E + PI G+GVA+
Sbjct: 25 MEIKNVTIKLKVPEGSNDVVVKNLYLSCDPYMRSRMRKIEGSYVESFAPGSPITGYGVAK 84
Query: 53 VVDLGHPEFKKGDLVWGTTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAG 112
V++ G P+F+KGDLVWG TGWEEYS+I + LFKIH ++PLSYY+GILGMPGM A+AG
Sbjct: 85 VLESGDPKFQKGDLVWGMTGWEEYSIITPTQTLFKIHDKDVPLSYYTGILGMPGMTAYAG 144
Query: 113 FYEIRAPKKGEYVFVSAASGAVG 135
F+E+ +PKKGE VFVSAASGAVG
Sbjct: 145 FHEVCSPKKGETVFVSAASGAVG 167
>pdb|2J3H|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Apo Form
pdb|2J3H|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Apo Form
pdb|2J3I|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Binary Complex
pdb|2J3I|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Binary Complex
pdb|2J3J|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex I
pdb|2J3J|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex I
pdb|2J3K|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex Ii
pdb|2J3K|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex Ii
Length = 345
Score = 170 bits (430), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 83/145 (57%), Positives = 107/145 (73%), Gaps = 12/145 (8%)
Query: 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKHEDN-----------GPIEGFGVA 51
T+ TV L+V EG+N+V VKNLYLSCDPY RI M K + + PI+G+GV+
Sbjct: 25 FTTTTVELRVPEGTNSVLVKNLYLSCDPYMRIRMGKPDPSTAALAQAYTPGQPIQGYGVS 84
Query: 52 RVVDLGHPEFKKGDLVWGTTGWEEYSVIK-NPEGLFKIHQTELPLSYYSGILGMPGMIAW 110
R+++ GHP++KKGDL+WG WEEYSVI FKI T++PLSYY+G+LGMPGM A+
Sbjct: 85 RIIESGHPDYKKGDLLWGIVAWEEYSVITPMTHAHFKIQHTDVPLSYYTGLLGMPGMTAY 144
Query: 111 AGFYEIRAPKKGEYVFVSAASGAVG 135
AGFYE+ +PK+GE V+VSAASGAVG
Sbjct: 145 AGFYEVCSPKEGETVYVSAASGAVG 169
>pdb|4B7C|A Chain A, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|B Chain B, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|C Chain C, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|D Chain D, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|E Chain E, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|F Chain F, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|G Chain G, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|H Chain H, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|I Chain I, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|J Chain J, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|K Chain K, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|L Chain L, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|A Chain A, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|B Chain B, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|C Chain C, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|D Chain D, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|E Chain E, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|F Chain F, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|G Chain G, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|H Chain H, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|I Chain I, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|J Chain J, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|K Chain K, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|L Chain L, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa
Length = 336
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 66/130 (50%), Gaps = 10/130 (7%)
Query: 13 AEGSNTVPVKNLYLSCDPYSRILMTKHEDNGP-------IEGFGVARVVDLGHPEFKKGD 65
AEG + VKN YLS DP R M P + GV +V+ HP F+ GD
Sbjct: 37 AEGQ--ILVKNEYLSLDPAMRGWMNDARSYIPPVGIGEVMRALGVGKVLVSKHPGFQAGD 94
Query: 66 LVWGTTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYV 125
V G G ++Y I P+G +K+ + PL Y LGM GM A+ ++ PK GE V
Sbjct: 95 YVNGALGVQDY-FIGEPKGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETV 153
Query: 126 FVSAASGAVG 135
+S A+GAVG
Sbjct: 154 VISGAAGAVG 163
>pdb|1V3T|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
pdb|1V3T|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
pdb|1V3U|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase In
Apo Form
pdb|1V3U|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase In
Apo Form
pdb|1V3V|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
Complexed With Nadp And 15-Oxo-Pge2
pdb|1V3V|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
Complexed With Nadp And 15-Oxo-Pge2
pdb|2DM6|A Chain A, Crystal Structure Of Anti-Configuration Of Indomethacin
And Leukotriene B4 12-Hydroxydehydrogenase15-Oxo-
Prostaglandin 13-Reductase Complex
pdb|2DM6|B Chain B, Crystal Structure Of Anti-Configuration Of Indomethacin
And Leukotriene B4 12-Hydroxydehydrogenase15-Oxo-
Prostaglandin 13-Reductase Complex
Length = 333
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 75/139 (53%), Gaps = 8/139 (5%)
Query: 4 TSATVSLKVAE----GSNTVPVKNLYLSCDPYSRILMTKHEDNGPIEGFGVARVVDLGHP 59
T + LK E + V ++ L+LS DPY RI + ++ + G VARVV+ +
Sbjct: 22 TQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIASKRLKEGAVMMGQQVARVVESKNS 81
Query: 60 EFKKGDLVWGTTGWEEYSVIKNPEGLFKIHQ---TELPLSYYSGILGMPGMIAWAGFYEI 116
F G +V +GW + I + +GL K+ +LPLS G +GMPG+ A+ G E+
Sbjct: 82 AFPAGSIVLAQSGWTTH-FISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEV 140
Query: 117 RAPKKGEYVFVSAASGAVG 135
K GE V VSAA+GAVG
Sbjct: 141 CGVKGGETVLVSAAAGAVG 159
>pdb|2Y05|A Chain A, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|B Chain B, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|C Chain C, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|D Chain D, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
Length = 328
Score = 75.5 bits (184), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 76/140 (54%), Gaps = 6/140 (4%)
Query: 2 YLTSATVSLKVAE----GSNTVPVKNLYLSCDPYSRILMTKHEDNGPIEGFGVARVVDLG 57
Y T++ LK +E + V ++ L+L+ DPY R+ + ++ + G VA+VV+
Sbjct: 15 YPTNSDFELKTSELPPLKNGEVLLEALFLTVDPYMRVAAKRLKEGDTMMGQQVAKVVESK 74
Query: 58 HPEFKKGDLVWGTTGWEEYSVI--KNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYE 115
+ KG +V + GW +S+ K+ E L +PLS G +GMPG+ A+ G E
Sbjct: 75 NVALPKGTIVLASPGWTTHSISDGKDLEKLLTEWPDTIPLSLALGTVGMPGLTAYFGLLE 134
Query: 116 IRAPKKGEYVFVSAASGAVG 135
I K GE V V+AA+GAVG
Sbjct: 135 ICGVKGGETVMVNAAAGAVG 154
>pdb|1ZSV|A Chain A, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|B Chain B, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|C Chain C, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|D Chain D, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
Length = 349
Score = 75.5 bits (184), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 76/140 (54%), Gaps = 6/140 (4%)
Query: 2 YLTSATVSLKVAE----GSNTVPVKNLYLSCDPYSRILMTKHEDNGPIEGFGVARVVDLG 57
Y T++ LK +E + V ++ L+L+ DPY R+ + ++ + G VA+VV+
Sbjct: 36 YPTNSDFELKTSELPPLKNGEVLLEALFLTVDPYMRVAAKRLKEGDTMMGQQVAKVVESK 95
Query: 58 HPEFKKGDLVWGTTGWEEYSVI--KNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYE 115
+ KG +V + GW +S+ K+ E L +PLS G +GMPG+ A+ G E
Sbjct: 96 NVALPKGTIVLASPGWTTHSISDGKDLEKLLTEWPDTIPLSLALGTVGMPGLTAYFGLLE 155
Query: 116 IRAPKKGEYVFVSAASGAVG 135
I K GE V V+AA+GAVG
Sbjct: 156 ICGVKGGETVMVNAAAGAVG 175
>pdb|2ZB3|A Chain A, Crystal Structure Of Mouse 15-Ketoprostaglandin Delta-13-
Reductase In Complex With Nadph
Length = 353
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 67/146 (45%), Gaps = 25/146 (17%)
Query: 9 SLKVAEGSNTVPVKNLYLSCDPYSRILMTKHEDNGP-----------IEGFGVARVVDLG 57
SL A V V+ LYLS DPY R M +ED G +G G+ V +
Sbjct: 31 SLPDALNEGQVQVRTLYLSVDPYMRCKM--NEDTGTDYLAPWQLAQVADGGGIGVVEESK 88
Query: 58 HPEFKKGDLV----WGTTGWEEYSVIKNPEGLFKI--HQTELPLSYYSGILGMPGMIAWA 111
H + KGD V W W+ +++ + GL K+ + LSY+ G +GMPG+ +
Sbjct: 89 HQKLTKGDFVTSFYW---PWQTKAIL-DGNGLEKVDPQLVDGHLSYFLGAIGMPGLTSLI 144
Query: 112 GFYEIRAPKKG--EYVFVSAASGAVG 135
G E G + + VS A+GA G
Sbjct: 145 GVQEKGHISAGSNQTMVVSGAAGACG 170
>pdb|2ZB4|A Chain A, Crystal Structure Of Human 15-Ketoprostaglandin Delta-13-
Reductase In Complex With Nadp And 15-Keto-Pge2
pdb|2ZB7|A Chain A, Crystal Structure Of Human 15-Ketoprostaglandin Delta-13-
Reductase In Complex With Nadph And Nicotinamide
pdb|2ZB8|A Chain A, Crystal Structure Of Human 15-Ketoprostaglandin Delta-13-
Reductase In Complex With Nadp And Indomethacin
Length = 357
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 60/132 (45%), Gaps = 17/132 (12%)
Query: 19 VPVKNLYLSCDPYSRILMTKHEDNGP-----------IEGFGVARVVDLGHPEFKKGDLV 67
V V+ LYLS DPY R M +ED G ++G G+ + + H KGD V
Sbjct: 45 VQVRTLYLSVDPYMRCRM--NEDTGTDYITPWQLSQVVDGGGIGIIEESKHTNLTKGDFV 102
Query: 68 WGTTGWEEYSVIKNPEGLFKI--HQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKG--E 123
+ VI + L K+ + LSY+ G +GMPG+ + G E G +
Sbjct: 103 TSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNK 162
Query: 124 YVFVSAASGAVG 135
+ VS A+GA G
Sbjct: 163 TMVVSGAAGACG 174
>pdb|2W4Q|A Chain A, Crystal Structure Of Human Zinc-Binding Alcohol
Dehydrogenase 1 (Zadh1) In Ternary Complex With Nadp And
18beta-Glycyrrhetinic Acid
pdb|2VNA|A Chain A, Structure Of Human Zinc-Binding Alcohol Dehydrogenase 1 (
Zadh1)
pdb|2W98|A Chain A, Crystal Structure Of Human Zinc-Binding Alcohol
Dehydrogenase 1 (Zadh1) In Ternary Complex With Nadp And
Phenylbutazone
pdb|2W98|B Chain B, Crystal Structure Of Human Zinc-Binding Alcohol
Dehydrogenase 1 (Zadh1) In Ternary Complex With Nadp And
Phenylbutazone
Length = 357
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 60/132 (45%), Gaps = 17/132 (12%)
Query: 19 VPVKNLYLSCDPYSRILMTKHEDNGP-----------IEGFGVARVVDLGHPEFKKGDLV 67
V V+ LYLS DPY R M +ED G ++G G+ + + H KGD V
Sbjct: 40 VQVRTLYLSVDPYMRCRM--NEDTGTDYITPWQLSQVVDGGGIGIIEESKHTNLTKGDFV 97
Query: 68 WGTTGWEEYSVIKNPEGLFKI--HQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKG--E 123
+ VI + L K+ + LSY+ G +GMPG+ + G E G +
Sbjct: 98 TSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNK 157
Query: 124 YVFVSAASGAVG 135
+ VS A+GA G
Sbjct: 158 TMVVSGAAGACG 169
>pdb|1VJ1|A Chain A, Crystal Structure Of Putative Nadph-Dependent
Oxidoreductase From Mus Musculus At 2.10 A Resolution
Length = 363
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 64/146 (43%), Gaps = 25/146 (17%)
Query: 9 SLKVAEGSNTVPVKNLYLSCDPYSRILMTKHEDNGP-----------IEGFGVARVVDLG 57
SL A V V+ LYLS DPY R +ED G +G G+ V +
Sbjct: 41 SLLDALNEGQVQVRTLYLSVDPYXR--CKXNEDTGTDYLAPWQLAQVADGGGIGIVEESK 98
Query: 58 HPEFKKGDLV----WGTTGWEEYSVIKNPEGLFKI--HQTELPLSYYSGILGMPGMIAWA 111
H + KGD V W W+ +++ + GL K+ + LSY+ G +G PG+ +
Sbjct: 99 HQKLAKGDFVTSFYW---PWQTKAIL-DGNGLEKVDPQLVDGHLSYFLGAIGXPGLTSLI 154
Query: 112 GFYEIRAPKKG--EYVFVSAASGAVG 135
G E G + VS A+GA G
Sbjct: 155 GVQEKGHISAGSNQTXVVSGAAGACG 180
>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp
pdb|1YB5|B Chain B, Crystal Structure Of Human Zeta-crystallin With Bound Nadp
Length = 351
Score = 33.1 bits (74), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 49 GVARVVDLGHPEFKKGDLVWGTT----GWEEYSVIKNPEGLFKIHQTELPLSYYSGI-LG 103
GV V FKKGD V+ ++ G+ EY++ + +++ L + G +G
Sbjct: 97 GVIEAVGDNASAFKKGDRVFTSSTISGGYAEYALAAD----HTVYKLPEKLDFKQGAAIG 152
Query: 104 MPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135
+P A+ K GE V V ASG VG
Sbjct: 153 IPYFTAYRALIHSACVKAGESVLVHGASGGVG 184
>pdb|3QWA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
pdb|3QWA|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
pdb|3QWB|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
pdb|3QWB|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
pdb|3QWB|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
pdb|3QWB|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
Length = 334
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 57 GHPEFKKGDLV--WGTTGWEEYSVIKNPEGLFKI----HQTELPLSYYSGILGMPGMIAW 110
G F+ GD V + + +YS I + + K+ EL L Y +G+L + +++
Sbjct: 81 GVTNFEVGDQVAYISNSTFAQYSKISSQGPVMKLPKGTSDEELKL-YAAGLLQVLTALSF 139
Query: 111 AGFYEIRAPKKGEYVFVSAASGAVG 135
E KKG+YV + AA+G VG
Sbjct: 140 TN--EAYHVKKGDYVLLFAAAGGVG 162
>pdb|4A2N|B Chain B, Crystal Structure Of Ma-Icmt
Length = 194
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 106 GMIAWAGFYEIRAPKKGE 123
G++AWA Y IR PK+ E
Sbjct: 152 GIVAWAILYFIRVPKEEE 169
>pdb|1WLY|A Chain A, Crystal Structure Of 2-haloacrylate Reductase
Length = 333
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 83 EGLFKI-HQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135
E L K+ +L + +G++ + GM A ++ K G+YV + AA+G +G
Sbjct: 107 EKLIKVPKDLDLDDVHLAGLM-LKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMG 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,454,037
Number of Sequences: 62578
Number of extensions: 191551
Number of successful extensions: 411
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 382
Number of HSP's gapped (non-prelim): 24
length of query: 135
length of database: 14,973,337
effective HSP length: 88
effective length of query: 47
effective length of database: 9,466,473
effective search space: 444924231
effective search space used: 444924231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)