Query 048381
Match_columns 135
No_of_seqs 117 out of 1445
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 08:58:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048381.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048381hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2130 Putative NADP-dependen 100.0 5.8E-29 1.3E-33 186.9 13.0 131 1-135 27-164 (340)
2 COG0604 Qor NADPH:quinone redu 100.0 1.7E-27 3.8E-32 183.8 13.4 129 3-135 15-156 (326)
3 cd08295 double_bond_reductase_ 99.9 4.8E-26 1E-30 175.3 15.1 134 1-135 21-165 (338)
4 PLN03154 putative allyl alcoho 99.9 3.6E-24 7.8E-29 166.2 15.1 134 1-135 27-172 (348)
5 TIGR02825 B4_12hDH leukotriene 99.9 8.3E-24 1.8E-28 161.9 13.9 128 4-135 20-152 (325)
6 KOG1196 Predicted NAD-dependen 99.9 2.4E-23 5.2E-28 156.4 13.3 135 1-135 22-167 (343)
7 KOG1197 Predicted quinone oxid 99.9 6.7E-24 1.4E-28 156.7 10.0 129 3-135 23-160 (336)
8 cd08294 leukotriene_B4_DH_like 99.9 2.7E-22 5.8E-27 153.0 13.6 129 3-135 21-157 (329)
9 cd08293 PTGR2 Prostaglandin re 99.9 3.1E-22 6.7E-27 154.0 13.6 130 4-135 24-168 (345)
10 COG1064 AdhP Zn-dependent alco 99.9 1.5E-22 3.3E-27 155.8 9.9 126 4-135 17-179 (339)
11 cd08237 ribitol-5-phosphate_DH 99.8 1.8E-20 3.9E-25 145.0 11.8 125 4-135 15-176 (341)
12 TIGR02818 adh_III_F_hyde S-(hy 99.8 5.3E-20 1.1E-24 143.7 14.0 128 3-135 14-198 (368)
13 cd08301 alcohol_DH_plants Plan 99.8 4.6E-20 1E-24 143.7 13.5 127 4-135 16-200 (369)
14 cd08281 liver_ADH_like1 Zinc-d 99.8 8.7E-20 1.9E-24 142.4 13.8 128 3-135 21-204 (371)
15 TIGR02817 adh_fam_1 zinc-bindi 99.8 7.6E-20 1.7E-24 139.9 12.6 129 3-135 17-162 (336)
16 cd08300 alcohol_DH_class_III c 99.8 1.6E-19 3.5E-24 140.8 13.6 127 4-135 16-199 (368)
17 PLN02827 Alcohol dehydrogenase 99.8 2.2E-19 4.8E-24 140.8 13.9 126 5-135 27-206 (378)
18 TIGR02822 adh_fam_2 zinc-bindi 99.8 2E-19 4.2E-24 138.7 13.3 127 3-135 15-178 (329)
19 PLN02740 Alcohol dehydrogenase 99.8 1.9E-19 4.2E-24 141.1 13.0 127 4-135 24-211 (381)
20 KOG0025 Zn2+-binding dehydroge 99.8 1.5E-19 3.2E-24 135.6 11.5 125 7-135 39-174 (354)
21 TIGR03451 mycoS_dep_FDH mycoth 99.8 2.4E-19 5.2E-24 139.3 13.1 126 5-135 16-189 (358)
22 cd08239 THR_DH_like L-threonin 99.8 3.8E-19 8.2E-24 136.7 12.8 127 3-135 12-176 (339)
23 PLN02586 probable cinnamyl alc 99.8 4E-19 8.8E-24 138.5 12.9 127 4-135 26-196 (360)
24 cd08277 liver_alcohol_DH_like 99.8 6.3E-19 1.4E-23 137.3 13.8 127 4-135 16-197 (365)
25 PRK09880 L-idonate 5-dehydroge 99.8 4.3E-19 9.4E-24 137.1 11.1 125 3-135 16-182 (343)
26 cd05288 PGDH Prostaglandin deh 99.8 1.8E-18 3.9E-23 131.9 13.7 130 3-135 20-159 (329)
27 PLN02514 cinnamyl-alcohol dehy 99.8 2.2E-18 4.7E-23 134.1 12.8 126 5-135 24-193 (357)
28 cd08270 MDR4 Medium chain dehy 99.8 3.6E-18 7.7E-23 128.9 13.1 128 3-135 14-146 (305)
29 cd08247 AST1_like AST1 is a cy 99.8 4.5E-18 9.8E-23 131.4 13.9 130 3-135 15-165 (352)
30 KOG0023 Alcohol dehydrogenase, 99.8 1.5E-18 3.2E-23 131.8 10.3 124 6-135 27-194 (360)
31 PLN02178 cinnamyl-alcohol dehy 99.8 3.7E-18 8E-23 133.9 13.0 127 4-135 20-191 (375)
32 KOG0024 Sorbitol dehydrogenase 99.8 1E-18 2.2E-23 132.8 9.0 127 3-135 16-182 (354)
33 cd05280 MDR_yhdh_yhfp Yhdh and 99.8 1.1E-17 2.5E-22 127.0 13.9 128 4-135 16-160 (325)
34 TIGR02823 oxido_YhdH putative 99.8 1.5E-17 3.2E-22 126.7 14.4 129 3-135 14-159 (323)
35 cd08243 quinone_oxidoreductase 99.8 9.7E-18 2.1E-22 126.7 12.9 126 6-135 18-156 (320)
36 cd08299 alcohol_DH_class_I_II_ 99.8 1.1E-17 2.4E-22 130.9 13.1 127 4-135 21-203 (373)
37 cd08292 ETR_like_2 2-enoyl thi 99.8 9.5E-18 2.1E-22 127.5 12.4 127 4-135 17-153 (324)
38 cd08231 MDR_TM0436_like Hypoth 99.8 1.1E-17 2.5E-22 129.6 13.0 128 3-135 13-190 (361)
39 cd08289 MDR_yhfp_like Yhfp put 99.8 1.3E-17 2.9E-22 126.9 12.9 128 4-135 16-160 (326)
40 cd08259 Zn_ADH5 Alcohol dehydr 99.8 3.1E-17 6.7E-22 124.8 14.4 128 3-135 13-176 (332)
41 TIGR02819 fdhA_non_GSH formald 99.8 2.3E-17 4.9E-22 130.3 13.9 117 15-135 32-198 (393)
42 cd08290 ETR 2-enoyl thioester 99.8 7.1E-18 1.5E-22 129.4 10.8 128 4-135 17-160 (341)
43 TIGR01202 bchC 2-desacetyl-2-h 99.8 6.4E-18 1.4E-22 129.1 10.5 122 4-135 14-157 (308)
44 PTZ00354 alcohol dehydrogenase 99.8 2E-17 4.4E-22 125.9 13.2 120 13-135 25-154 (334)
45 cd08273 MDR8 Medium chain dehy 99.8 1.9E-17 4.2E-22 126.2 13.1 128 4-135 16-153 (331)
46 cd05284 arabinose_DH_like D-ar 99.8 1.3E-17 2.9E-22 127.8 12.2 124 7-135 17-180 (340)
47 PRK10754 quinone oxidoreductas 99.8 2E-17 4.3E-22 126.3 12.6 126 6-135 19-154 (327)
48 PRK09422 ethanol-active dehydr 99.8 2E-17 4.4E-22 126.8 12.6 124 6-135 16-175 (338)
49 cd08233 butanediol_DH_like (2R 99.8 2.1E-17 4.5E-22 127.7 12.7 126 3-135 12-185 (351)
50 cd08246 crotonyl_coA_red croto 99.8 1.8E-17 4E-22 130.1 12.5 129 3-135 30-207 (393)
51 COG1062 AdhC Zn-dependent alco 99.7 4.7E-18 1E-22 130.1 8.8 125 6-135 18-198 (366)
52 cd08230 glucose_DH Glucose deh 99.7 1.4E-17 3.1E-22 129.1 11.6 125 3-135 13-185 (355)
53 cd08278 benzyl_alcohol_DH Benz 99.7 3.1E-17 6.7E-22 127.8 13.2 125 6-135 18-199 (365)
54 cd08284 FDH_like_2 Glutathione 99.7 3.2E-17 6.8E-22 126.0 13.0 128 3-135 12-180 (344)
55 cd08262 Zn_ADH8 Alcohol dehydr 99.7 2.1E-17 4.6E-22 126.9 12.0 123 6-135 14-174 (341)
56 cd08250 Mgc45594_like Mgc45594 99.7 5.9E-17 1.3E-21 123.7 13.5 125 5-135 20-153 (329)
57 cd08291 ETR_like_1 2-enoyl thi 99.7 2.2E-17 4.7E-22 126.4 11.1 126 4-135 19-157 (324)
58 cd08283 FDH_like_1 Glutathione 99.7 6.2E-17 1.3E-21 127.1 13.7 128 3-135 12-197 (386)
59 cd08288 MDR_yhdh Yhdh putative 99.7 9.2E-17 2E-21 122.2 14.2 129 3-135 15-160 (324)
60 TIGR03201 dearomat_had 6-hydro 99.7 3.2E-17 6.9E-22 127.0 11.8 125 4-135 12-179 (349)
61 cd08267 MDR1 Medium chain dehy 99.7 6.1E-17 1.3E-21 122.2 13.0 120 13-135 23-157 (319)
62 cd05279 Zn_ADH1 Liver alcohol 99.7 6.4E-17 1.4E-21 126.1 13.4 128 3-135 13-196 (365)
63 cd08279 Zn_ADH_class_III Class 99.7 7.2E-17 1.6E-21 125.5 13.6 127 4-135 14-195 (363)
64 cd05282 ETR_like 2-enoyl thioe 99.7 3.9E-17 8.4E-22 124.0 11.8 129 3-135 14-152 (323)
65 cd08248 RTN4I1 Human Reticulon 99.7 5.6E-17 1.2E-21 124.7 12.7 129 3-135 16-176 (350)
66 cd08249 enoyl_reductase_like e 99.7 2.6E-17 5.6E-22 126.8 10.7 129 3-135 14-168 (339)
67 PRK10309 galactitol-1-phosphat 99.7 7.8E-17 1.7E-21 124.5 13.4 126 4-135 13-173 (347)
68 cd05278 FDH_like Formaldehyde 99.7 4.5E-17 9.7E-22 125.1 11.9 126 4-135 13-180 (347)
69 cd08238 sorbose_phosphate_red 99.7 2.5E-17 5.4E-22 130.4 10.6 130 3-135 14-189 (410)
70 cd08274 MDR9 Medium chain dehy 99.7 5.7E-17 1.2E-21 124.7 12.2 118 14-135 26-191 (350)
71 cd08282 PFDH_like Pseudomonas 99.7 1.4E-16 3.1E-21 124.5 14.4 129 3-135 12-189 (375)
72 cd08264 Zn_ADH_like2 Alcohol d 99.7 1E-16 2.2E-21 122.3 13.1 125 6-135 17-176 (325)
73 PRK13771 putative alcohol dehy 99.7 1.3E-16 2.9E-21 122.0 13.8 127 4-135 14-176 (334)
74 cd08297 CAD3 Cinnamyl alcohol 99.7 1.5E-16 3.2E-21 122.2 13.7 128 3-135 14-179 (341)
75 cd08286 FDH_like_ADH2 formalde 99.7 1.6E-16 3.4E-21 122.4 13.8 128 4-135 13-179 (345)
76 cd08258 Zn_ADH4 Alcohol dehydr 99.7 1.4E-16 3.1E-21 121.3 12.8 127 3-135 14-177 (306)
77 KOG1198 Zinc-binding oxidoredu 99.7 6.7E-17 1.5E-21 125.8 11.1 127 5-135 22-171 (347)
78 cd08296 CAD_like Cinnamyl alco 99.7 1.8E-16 3.9E-21 121.8 13.4 127 3-135 13-176 (333)
79 cd08252 AL_MDR Arginate lyase 99.7 2.4E-16 5.2E-21 120.5 14.0 129 3-135 18-163 (336)
80 cd08236 sugar_DH NAD(P)-depend 99.7 1.4E-16 3.1E-21 122.4 12.8 124 5-135 14-172 (343)
81 cd08244 MDR_enoyl_red Possible 99.7 2.3E-16 5E-21 119.8 13.6 118 14-135 25-156 (324)
82 cd08263 Zn_ADH10 Alcohol dehyd 99.7 1.8E-16 4E-21 123.3 13.0 127 4-135 14-200 (367)
83 cd08260 Zn_ADH6 Alcohol dehydr 99.7 2.7E-16 5.9E-21 121.0 13.7 128 3-135 13-178 (345)
84 cd08256 Zn_ADH2 Alcohol dehydr 99.7 2.2E-16 4.8E-21 122.0 13.1 127 3-135 12-187 (350)
85 cd08234 threonine_DH_like L-th 99.7 2.3E-16 5E-21 120.6 12.5 125 4-135 13-172 (334)
86 TIGR01751 crot-CoA-red crotony 99.7 3.7E-16 8E-21 123.1 13.7 129 3-135 25-203 (398)
87 cd08240 6_hydroxyhexanoate_dh_ 99.7 2.3E-16 4.9E-21 121.8 11.8 127 4-135 14-188 (350)
88 cd08254 hydroxyacyl_CoA_DH 6-h 99.7 3.2E-16 6.9E-21 119.6 12.1 125 6-135 17-178 (338)
89 cd05276 p53_inducible_oxidored 99.7 4.6E-16 1E-20 116.9 12.4 119 14-135 25-153 (323)
90 cd08265 Zn_ADH3 Alcohol dehydr 99.7 4.2E-16 9.1E-21 122.3 12.6 128 4-135 40-216 (384)
91 cd08271 MDR5 Medium chain dehy 99.7 6.9E-16 1.5E-20 116.8 13.1 128 4-135 16-155 (325)
92 cd08253 zeta_crystallin Zeta-c 99.7 7.3E-16 1.6E-20 116.0 13.1 127 5-135 17-158 (325)
93 cd08266 Zn_ADH_like1 Alcohol d 99.7 7.4E-16 1.6E-20 117.0 13.2 125 7-135 19-180 (342)
94 cd08285 NADP_ADH NADP(H)-depen 99.7 7.4E-16 1.6E-20 119.1 13.4 124 6-135 15-179 (351)
95 PRK10083 putative oxidoreducta 99.7 4.5E-16 9.7E-21 119.5 12.1 126 3-135 12-173 (339)
96 cd08232 idonate-5-DH L-idonate 99.7 4.7E-16 1E-20 119.4 11.9 125 4-135 10-178 (339)
97 cd08275 MDR3 Medium chain dehy 99.7 1.1E-15 2.4E-20 116.2 13.9 120 13-135 23-152 (337)
98 cd08235 iditol_2_DH_like L-idi 99.7 8.4E-16 1.8E-20 118.0 13.3 125 4-135 13-178 (343)
99 cd05283 CAD1 Cinnamyl alcohol 99.7 8E-16 1.7E-20 118.4 13.0 126 4-135 13-182 (337)
100 cd08251 polyketide_synthase po 99.7 8.8E-16 1.9E-20 114.9 12.4 118 14-135 5-134 (303)
101 cd08272 MDR6 Medium chain dehy 99.7 1.1E-15 2.4E-20 115.4 13.0 126 6-135 18-158 (326)
102 cd08298 CAD2 Cinnamyl alcohol 99.7 1.4E-15 3.1E-20 116.1 13.6 124 6-135 20-180 (329)
103 KOG0022 Alcohol dehydrogenase, 99.7 3.3E-16 7.2E-21 118.9 9.4 128 3-135 20-205 (375)
104 cd08268 MDR2 Medium chain dehy 99.7 1.7E-15 3.7E-20 114.3 13.3 125 7-135 19-158 (328)
105 cd05286 QOR2 Quinone oxidoredu 99.7 2.1E-15 4.5E-20 113.2 13.6 125 7-135 18-150 (320)
106 cd08261 Zn_ADH7 Alcohol dehydr 99.7 2E-15 4.3E-20 115.9 13.5 125 3-135 12-172 (337)
107 cd05285 sorbitol_DH Sorbitol d 99.7 1.4E-15 3.1E-20 117.1 12.7 126 3-135 10-175 (343)
108 cd05188 MDR Medium chain reduc 99.7 1.9E-15 4.1E-20 111.4 12.1 114 18-135 1-147 (271)
109 cd05289 MDR_like_2 alcohol deh 99.6 3.9E-15 8.4E-20 111.5 12.6 120 13-135 24-158 (309)
110 cd08245 CAD Cinnamyl alcohol d 99.6 2.7E-15 5.8E-20 114.7 11.9 124 6-135 15-175 (330)
111 cd08269 Zn_ADH9 Alcohol dehydr 99.6 3.4E-15 7.5E-20 112.8 12.2 125 3-135 7-142 (312)
112 cd08242 MDR_like Medium chain 99.6 5.1E-15 1.1E-19 112.8 13.1 125 3-135 12-168 (319)
113 TIGR02824 quinone_pig3 putativ 99.6 5.7E-15 1.2E-19 111.3 12.9 120 13-135 24-153 (325)
114 cd05195 enoyl_red enoyl reduct 99.6 4.9E-15 1.1E-19 109.5 12.2 116 17-135 1-122 (293)
115 PLN02702 L-idonate 5-dehydroge 99.6 4E-15 8.8E-20 115.7 12.3 125 4-135 30-194 (364)
116 TIGR00692 tdh L-threonine 3-de 99.6 6E-15 1.3E-19 113.6 11.9 123 5-135 13-174 (340)
117 cd08276 MDR7 Medium chain dehy 99.6 1.1E-14 2.4E-19 110.8 13.0 125 6-135 18-173 (336)
118 cd08287 FDH_like_ADH3 formalde 99.6 1.7E-14 3.6E-19 111.0 13.1 128 4-135 13-181 (345)
119 PRK05396 tdh L-threonine 3-deh 99.6 1.8E-14 3.8E-19 110.9 11.2 125 3-135 13-176 (341)
120 cd05281 TDH Threonine dehydrog 99.6 3.8E-14 8.3E-19 109.1 12.0 124 4-135 14-176 (341)
121 smart00829 PKS_ER Enoylreducta 99.6 7.8E-14 1.7E-18 103.2 11.9 112 21-135 2-118 (288)
122 cd08241 QOR1 Quinone oxidoredu 99.5 2E-13 4.3E-18 102.6 13.0 117 16-135 27-153 (323)
123 COG1063 Tdh Threonine dehydrog 99.5 5.3E-13 1.1E-17 104.1 12.4 117 14-135 23-181 (350)
124 PF08240 ADH_N: Alcohol dehydr 99.4 1.1E-12 2.3E-17 86.3 7.9 72 16-88 1-109 (109)
125 TIGR03366 HpnZ_proposed putati 99.4 3.4E-12 7.4E-17 96.2 8.8 85 46-135 3-133 (280)
126 cd08255 2-desacetyl-2-hydroxye 99.3 3E-11 6.6E-16 90.2 9.0 85 45-135 24-110 (277)
127 KOG1202 Animal-type fatty acid 98.8 4.8E-09 1E-13 91.0 5.6 119 14-135 1442-1566(2376)
128 PF11017 DUF2855: Protein of u 90.6 0.58 1.3E-05 36.4 4.9 40 43-82 31-70 (314)
129 PRK00517 prmA ribosomal protei 86.0 1.2 2.6E-05 33.1 3.9 67 58-133 64-131 (250)
130 KOG1201 Hydroxysteroid 17-beta 77.9 1.3 2.8E-05 34.2 1.4 15 121-135 37-51 (300)
131 PF08541 ACP_syn_III_C: 3-Oxoa 70.4 5.4 0.00012 24.5 2.7 29 106-134 53-81 (90)
132 PF01455 HupF_HypC: HupF/HypC 64.5 4.7 0.0001 24.1 1.5 13 118-130 37-49 (68)
133 PF12242 Eno-Rase_NADH_b: NAD( 64.3 3.7 8E-05 25.3 1.0 19 117-135 34-52 (78)
134 PLN02780 ketoreductase/ oxidor 63.8 3.3 7.2E-05 31.9 0.9 15 121-135 52-66 (320)
135 TIGR00739 yajC preprotein tran 63.3 16 0.00035 22.7 3.8 32 59-90 36-68 (84)
136 COG1086 Predicted nucleoside-d 58.7 6.1 0.00013 33.3 1.6 15 121-135 249-263 (588)
137 PLN03209 translocon at the inn 58.5 8.3 0.00018 32.6 2.4 21 115-135 73-93 (576)
138 COG2264 PrmA Ribosomal protein 58.3 13 0.00028 28.8 3.3 68 59-134 107-175 (300)
139 TIGR00074 hypC_hupF hydrogenas 56.5 10 0.00022 23.3 2.0 13 118-130 35-47 (76)
140 PRK05585 yajC preprotein trans 55.1 25 0.00054 22.9 3.8 33 58-90 50-83 (106)
141 PRK06128 oxidoreductase; Provi 55.0 6.9 0.00015 29.5 1.3 15 121-135 54-68 (300)
142 PRK05866 short chain dehydroge 54.2 6.2 0.00014 29.8 0.9 15 121-135 39-53 (293)
143 PRK07985 oxidoreductase; Provi 54.0 8.3 0.00018 29.1 1.6 15 121-135 48-62 (294)
144 PRK10409 hydrogenase assembly 52.6 12 0.00026 23.8 1.9 13 118-130 41-53 (90)
145 PRK10413 hydrogenase 2 accesso 50.3 13 0.00029 23.1 1.8 13 118-130 42-54 (82)
146 PRK14533 groES co-chaperonin G 48.2 54 0.0012 20.7 4.4 24 60-83 53-84 (91)
147 PRK07424 bifunctional sterol d 47.8 8.8 0.00019 30.9 0.9 15 121-135 177-191 (406)
148 PF10844 DUF2577: Protein of u 47.7 25 0.00054 22.5 2.9 21 60-80 76-98 (100)
149 TIGR00406 prmA ribosomal prote 46.1 48 0.001 25.1 4.7 66 59-133 104-171 (288)
150 PRK06701 short chain dehydroge 44.9 11 0.00023 28.4 0.9 15 121-135 45-59 (290)
151 PF01135 PCMT: Protein-L-isoas 44.0 31 0.00067 25.1 3.2 27 105-133 58-84 (209)
152 PF06325 PrmA: Ribosomal prote 43.3 19 0.0004 27.8 2.0 67 59-134 106-174 (295)
153 PLN02572 UDP-sulfoquinovose sy 43.1 13 0.00027 30.1 1.2 16 120-135 45-60 (442)
154 PTZ00414 10 kDa heat shock pro 43.0 91 0.002 20.1 5.0 24 60-83 62-93 (100)
155 PRK08261 fabG 3-ketoacyl-(acyl 42.2 13 0.00029 29.7 1.2 15 121-135 209-223 (450)
156 PRK08261 fabG 3-ketoacyl-(acyl 39.6 11 0.00025 30.1 0.4 21 115-135 27-51 (450)
157 PRK08324 short chain dehydroge 35.5 17 0.00038 31.0 0.9 16 120-135 420-435 (681)
158 PRK06484 short chain dehydroge 34.1 20 0.00044 29.1 1.1 15 121-135 268-282 (520)
159 COG1329 Transcriptional regula 33.1 80 0.0017 22.4 3.7 32 60-91 4-53 (166)
160 PLN02686 cinnamoyl-CoA reducta 32.8 19 0.00041 28.2 0.6 17 119-135 50-66 (367)
161 COG0332 FabH 3-oxoacyl-[acyl-c 32.7 55 0.0012 25.7 3.2 26 109-134 288-313 (323)
162 PF13403 Hint_2: Hint domain 31.5 67 0.0014 22.0 3.1 20 57-76 17-37 (147)
163 PLN02206 UDP-glucuronate decar 31.2 21 0.00045 29.0 0.7 16 120-135 117-132 (442)
164 PRK05855 short chain dehydroge 29.9 25 0.00053 28.7 0.9 15 121-135 314-328 (582)
165 PRK05886 yajC preprotein trans 29.4 39 0.00084 22.2 1.6 24 59-82 37-61 (109)
166 cd05834 HDGF_related The PWWP 29.3 44 0.00096 20.6 1.8 10 60-69 2-11 (83)
167 PRK07201 short chain dehydroge 29.3 25 0.00054 29.5 0.8 14 122-135 371-384 (657)
168 TIGR02632 RhaD_aldol-ADH rhamn 29.3 26 0.00056 30.1 0.9 15 121-135 413-427 (676)
169 PF14031 D-ser_dehydrat: Putat 29.2 1.1E+02 0.0024 19.2 3.7 31 50-80 55-94 (94)
170 PLN02657 3,8-divinyl protochlo 29.0 29 0.00064 27.5 1.2 18 118-135 56-73 (390)
171 cd00401 AdoHcyase S-adenosyl-L 28.6 43 0.00094 27.2 2.0 30 105-135 184-214 (413)
172 PRK06531 yajC preprotein trans 28.3 39 0.00084 22.4 1.5 23 59-81 35-58 (113)
173 PRK05476 S-adenosyl-L-homocyst 28.3 54 0.0012 26.7 2.5 30 105-135 194-224 (425)
174 COG1018 Hmp Flavodoxin reducta 27.9 1.1E+02 0.0023 23.2 4.0 25 106-130 121-146 (266)
175 PRK06816 3-oxoacyl-(acyl carri 27.9 86 0.0019 24.7 3.6 19 115-133 348-366 (378)
176 PRK13656 trans-2-enoyl-CoA red 27.8 33 0.00072 27.7 1.2 19 117-135 35-54 (398)
177 PRK00364 groES co-chaperonin G 27.8 1.5E+02 0.0032 18.8 4.0 11 60-70 58-68 (95)
178 PRK14982 acyl-ACP reductase; P 26.7 27 0.00058 27.6 0.6 15 121-135 154-168 (340)
179 KOG1816 Ubiquitin fusion-degra 26.4 3.2E+02 0.0068 21.4 6.6 59 60-128 97-155 (308)
180 PF10686 DUF2493: Protein of u 26.1 58 0.0013 19.5 1.8 24 109-133 20-44 (71)
181 smart00739 KOW KOW (Kyprides, 25.8 76 0.0016 14.4 1.9 12 119-130 2-13 (28)
182 COG2871 NqrF Na+-transporting 25.3 35 0.00076 26.7 0.9 23 60-82 253-275 (410)
183 cd04486 YhcR_OBF_like YhcR_OBF 25.3 1.2E+02 0.0026 18.3 3.2 20 58-77 42-61 (78)
184 COG1862 YajC Preprotein transl 24.9 54 0.0012 21.1 1.6 31 59-89 42-73 (97)
185 cd04493 BRCA2DBD_OB1 BRCA2DBD_ 24.6 81 0.0018 20.4 2.4 18 114-131 46-63 (100)
186 KOG1208 Dehydrogenases with di 24.6 48 0.001 25.8 1.6 17 119-135 32-48 (314)
187 CHL00203 fabH 3-oxoacyl-acyl-c 24.5 95 0.0021 23.7 3.2 20 115-134 297-316 (326)
188 PRK07204 3-oxoacyl-(acyl carri 24.4 97 0.0021 23.6 3.3 21 114-134 300-320 (329)
189 cd00320 cpn10 Chaperonin 10 Kd 24.3 1.9E+02 0.0041 18.1 5.7 12 59-70 56-67 (93)
190 COG3007 Uncharacterized paraqu 24.0 51 0.0011 25.9 1.6 20 116-135 34-54 (398)
191 PF02832 Flavi_glycop_C: Flavi 23.7 1.2E+02 0.0026 19.5 3.0 25 1-29 9-33 (97)
192 PRK08125 bifunctional UDP-gluc 23.6 40 0.00086 28.8 1.0 16 120-135 313-328 (660)
193 COG1889 NOP1 Fibrillarin-like 23.0 75 0.0016 23.6 2.2 23 111-134 67-89 (231)
194 PLN02166 dTDP-glucose 4,6-dehy 22.6 42 0.0009 27.2 0.9 16 120-135 118-133 (436)
195 cd05836 N_Pac_NP60 The PWWP do 22.2 64 0.0014 20.0 1.5 10 61-70 1-10 (86)
196 COG2518 Pcm Protein-L-isoaspar 22.2 94 0.002 22.9 2.6 27 105-133 58-84 (209)
197 cd05835 Dnmt3b_related The PWW 22.1 64 0.0014 20.0 1.5 10 61-70 1-10 (87)
198 COG0298 HypC Hydrogenase matur 22.1 69 0.0015 19.9 1.6 12 118-129 38-49 (82)
199 PF04225 OapA: Opacity-associa 21.9 1.7E+02 0.0037 18.0 3.5 14 115-128 39-52 (85)
200 COG1608 Predicted archaeal kin 21.9 1.1E+02 0.0024 23.2 3.0 20 115-135 32-51 (252)
201 PRK05963 3-oxoacyl-(acyl carri 21.6 1.2E+02 0.0026 23.1 3.3 20 115-134 298-317 (326)
202 PF13580 SIS_2: SIS domain; PD 21.2 91 0.002 20.8 2.3 17 117-133 99-115 (138)
203 cd05840 SPBC215_ISWI_like The 21.0 70 0.0015 20.2 1.6 10 61-70 1-10 (93)
204 PF09103 BRCA-2_OB1: BRCA2, ol 20.9 98 0.0021 20.5 2.3 18 114-131 58-75 (118)
205 KOG3209 WW domain-containing p 20.9 62 0.0014 28.5 1.6 16 58-73 794-809 (984)
206 cd00830 KAS_III Ketoacyl-acyl 20.3 1.2E+02 0.0026 22.8 3.0 19 115-133 294-312 (320)
207 TIGR00747 fabH 3-oxoacyl-(acyl 20.0 1.3E+02 0.0029 22.7 3.2 20 114-133 289-308 (318)
No 1
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=99.96 E-value=5.8e-29 Score=186.90 Aligned_cols=131 Identities=44% Similarity=0.726 Sum_probs=116.7
Q ss_pred CeeeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCCCCC-------CCcccceEEEEEecCCCCCCCCCEEEEcCCe
Q 048381 1 MYLTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKHEDN-------GPIEGFGVARVVDLGHPEFKKGDLVWGTTGW 73 (135)
Q Consensus 1 ~~~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~~~~-------~~~~g~~~g~vv~~~~~~~~~Gd~V~~~g~~ 73 (135)
|++.+.++| .|++||||+|+.|.|+||+||.+|...++| .++.+..+++|+.|+.+.|++||.|.+..+|
T Consensus 27 F~lee~~vp---~p~~GqvLl~~~ylS~DPymRgrm~d~~SY~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~~GW 103 (340)
T COG2130 27 FRLEEVDVP---EPGEGQVLLRTLYLSLDPYMRGRMSDAPSYAPPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGVSGW 103 (340)
T ss_pred ceeEeccCC---CCCcCceEEEEEEeccCHHHeecccCCcccCCCcCCCceeECCeeEEEEecCCCCCCCCCEEEecccc
Confidence 667777777 369999999999999999999999776665 1345667888899999999999999999999
Q ss_pred eeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 74 EEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 74 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
+||.+++.+. +.|++++..+++..+++++|+++|||++|.+++++++||||+|++|+|+||
T Consensus 104 q~y~i~~~~~-l~Kvd~~~~pl~~~LgvLGmpG~TAY~gLl~igqpk~GetvvVSaAaGaVG 164 (340)
T COG2130 104 QEYAISDGEG-LRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKAGETVVVSAAAGAVG 164 (340)
T ss_pred eEEEeechhh-ceecCCCCCCcchHHhhcCCchHHHHHHHHHhcCCCCCCEEEEEecccccc
Confidence 9999999998 999997666787778899999999999999999999999999999999997
No 2
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=99.95 E-value=1.7e-27 Score=183.78 Aligned_cols=129 Identities=27% Similarity=0.363 Sum_probs=107.9
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCC--C--CCCCccc-ceEEEEEe--cCCCCCCCCCEEEEc-----
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKH--E--DNGPIEG-FGVARVVD--LGHPEFKKGDLVWGT----- 70 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~--~--~~~~~~g-~~~g~vv~--~~~~~~~~Gd~V~~~----- 70 (135)
++.+++|.|. |++|||||||+++||||.|...+... + .++.++| +.+|+|++ +++++|++||||+..
T Consensus 15 l~~~e~~~P~-p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~~GdrV~~~~~~~~ 93 (326)
T COG0604 15 LKVVEVPEPE-PGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFKVGDRVAALGGVGR 93 (326)
T ss_pred eEEEecCCCC-CCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcCCCCEEEEccCCCC
Confidence 5667777664 89999999999999999765443321 1 1244555 78898865 789999999999986
Q ss_pred -CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 71 -TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 71 -g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
|+|+||++++++. ++++|++ +++++++ +++++++|||++|++..++++|++|||+||+|+||
T Consensus 94 ~G~~AEy~~v~a~~-~~~~P~~-ls~~eAA-al~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG 156 (326)
T COG0604 94 DGGYAEYVVVPADW-LVPLPDG-LSFEEAA-ALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVG 156 (326)
T ss_pred CCcceeEEEecHHH-ceeCCCC-CCHHHHH-HHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHH
Confidence 6899999999998 9999984 8988865 69999999999999999999999999999999987
No 3
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=99.94 E-value=4.8e-26 Score=175.25 Aligned_cols=134 Identities=62% Similarity=1.038 Sum_probs=107.3
Q ss_pred CeeeeeeecccCC-CCCCcEEEEEEEEeeCHHHHhhhcCCC----CCCCc-----ccceEEEEEecCCCCCCCCCEEEEc
Q 048381 1 MYLTSATVSLKVA-EGSNTVPVKNLYLSCDPYSRILMTKHE----DNGPI-----EGFGVARVVDLGHPEFKKGDLVWGT 70 (135)
Q Consensus 1 ~~~~~~~~~~~~~-p~~~eVlVkv~a~~ln~~~~~~~~~~~----~~~~~-----~g~~~g~vv~~~~~~~~~Gd~V~~~ 70 (135)
|+++++++|++.| |++|||||||+|+||||.++..+.... ..+.. .|.+++.++++++++|++||+|+++
T Consensus 21 ~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v~~~v~~~~vGd~V~~~ 100 (338)
T cd08295 21 LELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVVDSGNPDFKVGDLVWGF 100 (338)
T ss_pred eEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEEecCCCCCCCCCEEEec
Confidence 6788888877766 899999999999999998765442211 11112 2346667788888899999999999
Q ss_pred CCeeeEEEecC-CCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 71 TGWEEYSVIKN-PEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 71 g~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
++|+||+++++ .. ++++|++.++++..+++++++++|||++|.+.+++++|++|||+||+|++|
T Consensus 101 g~~aey~~v~~~~~-~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG 165 (338)
T cd08295 101 TGWEEYSLIPRGQD-LRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVG 165 (338)
T ss_pred CCceeEEEecchhc-eeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHH
Confidence 99999999999 77 999964346765334468999999999998889999999999999999876
No 4
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=99.92 E-value=3.6e-24 Score=166.19 Aligned_cols=134 Identities=52% Similarity=0.873 Sum_probs=103.0
Q ss_pred Ceeeee-eecccCCCCCCcEEEEEEEEeeCHHHHhhhcCC-CC--CCCccc---ceEEEE--EecCCCCCCCCCEEEEcC
Q 048381 1 MYLTSA-TVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKH-ED--NGPIEG---FGVARV--VDLGHPEFKKGDLVWGTT 71 (135)
Q Consensus 1 ~~~~~~-~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~-~~--~~~~~g---~~~g~v--v~~~~~~~~~Gd~V~~~g 71 (135)
|++.++ ++|+|.|+++||||||++++++||+++..+... .. .+..+| +++|+| +++++++|++||+|++++
T Consensus 27 f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~~~~~p~~~G~~~~~~G~v~~vg~~v~~~~~Gd~V~~~~ 106 (348)
T PLN03154 27 MEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHDSYLPPFVPGQRIEGFGVSKVVDSDDPNFKPGDLISGIT 106 (348)
T ss_pred EEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCCCCCCCcCCCCeeEeeEEEEEEecCCCCCCCCCEEEecC
Confidence 777776 466655568999999999999999887654321 11 122344 455654 678889999999999999
Q ss_pred CeeeEEEecCCC-ceEEc--CCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 72 GWEEYSVIKNPE-GLFKI--HQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 72 ~~~~~~~~~~~~-~~~~~--p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
+|+||++++.+. .+.++ |+ .++++..+++++++++|||++|.+.+++++|++|||+||+|++|
T Consensus 107 ~~aey~~v~~~~~~~~~~~~P~-~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG 172 (348)
T PLN03154 107 GWEEYSLIRSSDNQLRKIQLQD-DIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVG 172 (348)
T ss_pred CcEEEEEEeccccceEEccCcC-CCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHH
Confidence 999999998752 15444 76 47776334468999999999998888999999999999999886
No 5
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=99.91 E-value=8.3e-24 Score=161.91 Aligned_cols=128 Identities=35% Similarity=0.550 Sum_probs=99.8
Q ss_pred eeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCCCCCCCccc-ceEEEEEecCCCCCCCCCEEEEcCCeeeEEEecCC
Q 048381 4 TSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKHEDNGPIEG-FGVARVVDLGHPEFKKGDLVWGTTGWEEYSVIKNP 82 (135)
Q Consensus 4 ~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~~~~~~~~g-~~~g~vv~~~~~~~~~Gd~V~~~g~~~~~~~~~~~ 82 (135)
+.+++|.|. |++|||||||+|+|+|+++|.........+.++| +.+|+|++. .+.|++||+|+++++|++|++++.+
T Consensus 20 ~~~~~~~p~-~~~~evlv~v~a~~~n~~~~~g~~~~~~~~~i~G~~~~g~v~~~-~~~~~~GdrV~~~~~~~~~~~~~~~ 97 (325)
T TIGR02825 20 ELKTVELPP-LNNGEVLLEALFLSVDPYMRVAAKRLKEGDTMMGQQVARVVESK-NVALPKGTIVLASPGWTSHSISDGK 97 (325)
T ss_pred EEEeccCCC-CCCCcEEEEEEEEecCHHHhcccCcCCCCCcEecceEEEEEEeC-CCCCCCCCEEEEecCceeeEEechh
Confidence 334455443 7999999999999999987654322221233556 666777764 4679999999999899999999988
Q ss_pred CceEEc----CCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 83 EGLFKI----HQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 83 ~~~~~~----p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
. +.++ |+ .+++++++++++++++|||+++.+.+++++|++|||+||+|++|
T Consensus 98 ~-~~~l~~~~p~-~~~~~~aaa~l~~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG 152 (325)
T TIGR02825 98 D-LEKLLTEWPD-TLPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVG 152 (325)
T ss_pred h-eEEccccccC-CCCHHHHHHhcccHHHHHHHHHHHHhCCCCCCEEEEeCCccHHH
Confidence 7 8777 76 36776653468899999999999899999999999999999886
No 6
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=99.91 E-value=2.4e-23 Score=156.38 Aligned_cols=135 Identities=66% Similarity=1.133 Sum_probs=115.0
Q ss_pred CeeeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCCCC--C-------CCcccceEEEEEecCCCCCCCCCEEEEcC
Q 048381 1 MYLTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKHED--N-------GPIEGFGVARVVDLGHPEFKKGDLVWGTT 71 (135)
Q Consensus 1 ~~~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~~~--~-------~~~~g~~~g~vv~~~~~~~~~Gd~V~~~g 71 (135)
|+++++++++..|++.+|||||..|.+.+|+||.+|+.... | .++.|.++++|++++.++|++||.|++.-
T Consensus 22 ~~~~~~~~el~~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g~GV~kVi~S~~~~~~~GD~v~g~~ 101 (343)
T KOG1196|consen 22 FEFTTTTVELRVPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDGFGVAKVIDSGHPNYKKGDLVWGIV 101 (343)
T ss_pred ceeeeeeecccCCCCCccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecCCceEEEEecCCCCCCcCceEEEec
Confidence 56777777766678999999999999999999988864321 1 24667889999999999999999999999
Q ss_pred CeeeEEEecCCC-ceEEcCC-CCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 72 GWEEYSVIKNPE-GLFKIHQ-TELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 72 ~~~~~~~~~~~~-~~~~~p~-~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
+|.||.+++++. ..++++. .+.++++..+.++++++|||.++++++.+++|+||+|+||+|++|
T Consensus 102 gWeeysii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvG 167 (343)
T KOG1196|consen 102 GWEEYSVITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVG 167 (343)
T ss_pred cceEEEEecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhH
Confidence 999999998864 2566654 247888888899999999999999999999999999999999987
No 7
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=99.91 E-value=6.7e-24 Score=156.71 Aligned_cols=129 Identities=22% Similarity=0.233 Sum_probs=102.2
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHH---HHhhhcCCCCCCCccc-ceEEEEE--ecCCCCCCCCCEEEEc---CCe
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPY---SRILMTKHEDNGPIEG-FGVARVV--DLGHPEFKKGDLVWGT---TGW 73 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~---~~~~~~~~~~~~~~~g-~~~g~vv--~~~~~~~~~Gd~V~~~---g~~ 73 (135)
+|-++.|.| +|.|+|++||.+|+|+|+. .|..+....+.+..+| +++|+|+ +++++++++||||.-. |.|
T Consensus 23 lk~ed~pv~-~papgel~iknka~GlNfid~y~RkGlY~~~plPytpGmEaaGvVvAvG~gvtdrkvGDrVayl~~~g~y 101 (336)
T KOG1197|consen 23 LKLEDRPVP-PPAPGELTIKNKACGLNFIDLYFRKGLYDPAPLPYTPGMEAAGVVVAVGEGVTDRKVGDRVAYLNPFGAY 101 (336)
T ss_pred EEEeeecCC-CCCCCceEEeehhcCccHHHHHHhccccCCCCCCcCCCcccceEEEEecCCccccccccEEEEeccchhh
Confidence 344444433 5889999999999999984 3433321111133444 6667665 5889999999999865 889
Q ss_pred eeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 74 EEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 74 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
+|+..+|... ++++|++ +++..++ ++.+.++|||.-+++..++++|++||||+|+||||
T Consensus 102 aee~~vP~~k-v~~vpe~-i~~k~aa-a~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVG 160 (336)
T KOG1197|consen 102 AEEVTVPSVK-VFKVPEA-ITLKEAA-ALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVG 160 (336)
T ss_pred heecccccee-eccCCcc-cCHHHHH-HHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHH
Confidence 9999999998 9999985 8998876 47789999999999999999999999999999997
No 8
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=99.89 E-value=2.7e-22 Score=152.95 Aligned_cols=129 Identities=33% Similarity=0.538 Sum_probs=99.3
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCCCCCCCccc-ceEEEEEecCCCCCCCCCEEEEcCCeeeEEEecC
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKHEDNGPIEG-FGVARVVDLGHPEFKKGDLVWGTTGWEEYSVIKN 81 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~~~~~~~~g-~~~g~vv~~~~~~~~~Gd~V~~~g~~~~~~~~~~ 81 (135)
++.+++|.|. |++||||||++++|||+.++........++.+.| +++|+|+ +.+++|++||+|++.++|++|++++.
T Consensus 21 l~~~~~~~p~-~~~~evlVkv~a~~in~~~~~~~~~~~~~p~v~G~e~~G~V~-~~~~~~~~Gd~V~~~~~~~~~~~~~~ 98 (329)
T cd08294 21 FELVEEELPP-LKDGEVLCEALFLSVDPYMRPYSKRLNEGDTMIGTQVAKVIE-SKNSKFPVGTIVVASFGWRTHTVSDG 98 (329)
T ss_pred eEEEecCCCC-CCCCcEEEEEEEEecCHHHhcccccCCCCCcEecceEEEEEe-cCCCCCCCCCEEEeeCCeeeEEEECC
Confidence 3445555543 8999999999999999976542211111233444 6677776 56778999999999999999999999
Q ss_pred C---CceEEcCCCCCC--hhh--hhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 82 P---EGLFKIHQTELP--LSY--YSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 82 ~---~~~~~~p~~~~~--~~~--~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
+ . ++++|++ ++ +.+ ..++++++++|||++|.+.+++++|++|||+||+|++|
T Consensus 99 ~~~~~-~~~iP~~-~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG 157 (329)
T cd08294 99 KDQPD-LYKLPAD-LPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVG 157 (329)
T ss_pred ccccc-eEECCcc-ccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHH
Confidence 9 8 9999985 55 211 12357889999999998889999999999999999876
No 9
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=99.89 E-value=3.1e-22 Score=153.96 Aligned_cols=130 Identities=31% Similarity=0.430 Sum_probs=96.8
Q ss_pred eeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC-----C-CCCCCc-ccceEEEEE--ecCCCCCCCCCEEEEc-CCe
Q 048381 4 TSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK-----H-EDNGPI-EGFGVARVV--DLGHPEFKKGDLVWGT-TGW 73 (135)
Q Consensus 4 ~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~-----~-~~~~~~-~g~~~g~vv--~~~~~~~~~Gd~V~~~-g~~ 73 (135)
+.+++|.|.|+++|||||||+|+|||+.++..+.. . ..++.. +.+++|+|+ ++++++|++||+|++. ++|
T Consensus 24 ~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~ 103 (345)
T cd08293 24 RVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSFNWPW 103 (345)
T ss_pred EEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEecCCCc
Confidence 33455544433599999999999999987532211 1 112223 346777775 5778899999999987 589
Q ss_pred eeEEEecCCCceEEcCCCCCChh---hhhhccChHHHHHHHHHHhhcCCCCC--CEEEEecCCCCCC
Q 048381 74 EEYSVIKNPEGLFKIHQTELPLS---YYSGILGMPGMIAWAGFYEIRAPKKG--EYVFVSAASGAVG 135 (135)
Q Consensus 74 ~~~~~~~~~~~~~~~p~~~~~~~---~~~~~l~~~~~TA~~~l~~~~~~~~g--~~VlV~ga~g~vG 135 (135)
+||++++++. ++++|++ ++.. ..+++++++++|||++|.+.+++++| ++|||+||+|++|
T Consensus 104 ae~~~v~~~~-~~~iP~~-~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG 168 (345)
T cd08293 104 QTYAVLDGSS-LEKVDPQ-LVDGHLSYFLGAVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACG 168 (345)
T ss_pred eeEEEecHHH-eEEcCcc-ccccchhHHhhhcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHH
Confidence 9999999998 9999984 3221 12235778999999999888888877 9999999999876
No 10
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=99.88 E-value=1.5e-22 Score=155.82 Aligned_cols=126 Identities=24% Similarity=0.227 Sum_probs=100.3
Q ss_pred eeeeecccCCCCCCcEEEEEEEEeeCHHHH-hhhcCCC--CCCCccc-ceEEEEE--ecCCCCCCCCCEEEE-c------
Q 048381 4 TSATVSLKVAEGSNTVPVKNLYLSCDPYSR-ILMTKHE--DNGPIEG-FGVARVV--DLGHPEFKKGDLVWG-T------ 70 (135)
Q Consensus 4 ~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~-~~~~~~~--~~~~~~g-~~~g~vv--~~~~~~~~~Gd~V~~-~------ 70 (135)
+.+++|.| +|+++||+|||+|+|+++.|. .+.+..+ .++.++| +.+|+|+ +++|++||+||||.. +
T Consensus 17 ~i~e~~~p-~p~~~eVlI~v~~~GVChsDlH~~~G~~~~~~~P~ipGHEivG~V~~vG~~V~~~k~GDrVgV~~~~~~Cg 95 (339)
T COG1064 17 EIEEVPVP-EPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLIPGHEIVGTVVEVGEGVTGLKVGDRVGVGWLVISCG 95 (339)
T ss_pred eEEeccCC-CCCCCeEEEEEEEEeecchhhhhhcCCCCCCCCCccCCcceEEEEEEecCCCccCCCCCEEEecCccCCCC
Confidence 44566655 489999999999999999753 3332222 1344555 7889885 588999999999975 2
Q ss_pred ------------------------CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEE
Q 048381 71 ------------------------TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVF 126 (135)
Q Consensus 71 ------------------------g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~Vl 126 (135)
|+|+||+++++++ ++++|++ +++.+++ .+.|++.|.|.+|.+ .+++||++|+
T Consensus 96 ~C~~C~~G~E~~C~~~~~~gy~~~GGyaeyv~v~~~~-~~~iP~~-~d~~~aA-pllCaGiT~y~alk~-~~~~pG~~V~ 171 (339)
T COG1064 96 ECEYCRSGNENLCPNQKITGYTTDGGYAEYVVVPARY-VVKIPEG-LDLAEAA-PLLCAGITTYRALKK-ANVKPGKWVA 171 (339)
T ss_pred CCccccCcccccCCCccccceeecCcceeEEEEchHH-eEECCCC-CChhhhh-hhhcCeeeEeeehhh-cCCCCCCEEE
Confidence 6899999999997 9999995 8877654 588999999999976 7899999999
Q ss_pred EecCCCCCC
Q 048381 127 VSAASGAVG 135 (135)
Q Consensus 127 V~ga~g~vG 135 (135)
|.|++ |+|
T Consensus 172 I~G~G-GlG 179 (339)
T COG1064 172 VVGAG-GLG 179 (339)
T ss_pred EECCc-HHH
Confidence 99985 654
No 11
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=99.84 E-value=1.8e-20 Score=144.96 Aligned_cols=125 Identities=15% Similarity=0.054 Sum_probs=93.9
Q ss_pred eeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCC-------CCCCCc-ccceEEEEEecCCCCCCCCCEEEEc-----
Q 048381 4 TSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKH-------EDNGPI-EGFGVARVVDLGHPEFKKGDLVWGT----- 70 (135)
Q Consensus 4 ~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~-------~~~~~~-~g~~~g~vv~~~~~~~~~Gd~V~~~----- 70 (135)
+.+++|.| +++|||||||+++|||+.|...+... ..++.+ +.+.+|+|++.++..|++||||+..
T Consensus 15 ~~~~~~~P--~~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~~~~vGdrV~~~~~~~~ 92 (341)
T cd08237 15 EVTYEEEN--LREDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTGTYKVGTKVVMVPNTPV 92 (341)
T ss_pred EEeecCCC--CCCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCCccCCCCEEEECCCCCc
Confidence 34455544 48999999999999999754333211 112333 4489999998777789999999752
Q ss_pred ----------------------CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhh--cCCCCCCEEE
Q 048381 71 ----------------------TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEI--RAPKKGEYVF 126 (135)
Q Consensus 71 ----------------------g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~--~~~~~g~~Vl 126 (135)
|+|+||++++++. ++++|++ ++++++ ++..+..|||+++.+. ..+++||+||
T Consensus 93 ~~~~~~~~~~c~~~~~~g~~~~G~~aey~~v~~~~-~~~vP~~-l~~~~a--a~~~~~~~a~~a~~~~~~~~~~~g~~Vl 168 (341)
T cd08237 93 EKDEIIPENYLPSSRFRSSGYDGFMQDYVFLPPDR-LVKLPDN-VDPEVA--AFTELVSVGVHAISRFEQIAHKDRNVIG 168 (341)
T ss_pred hhcccchhccCCCcceeEecCCCceEEEEEEchHH-eEECCCC-CChHHh--hhhchHHHHHHHHHHHhhcCCCCCCEEE
Confidence 7799999999998 9999985 777653 3556888999998653 3568999999
Q ss_pred EecCCCCCC
Q 048381 127 VSAASGAVG 135 (135)
Q Consensus 127 V~ga~g~vG 135 (135)
|.|+ |++|
T Consensus 169 V~G~-G~vG 176 (341)
T cd08237 169 VWGD-GNLG 176 (341)
T ss_pred EECC-CHHH
Confidence 9996 8776
No 12
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=99.84 E-value=5.3e-20 Score=143.68 Aligned_cols=128 Identities=21% Similarity=0.225 Sum_probs=98.9
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC-CC--CCCCc-ccceEEEEEe--cCCCCCCCCCEEEEc------
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK-HE--DNGPI-EGFGVARVVD--LGHPEFKKGDLVWGT------ 70 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~-~~--~~~~~-~g~~~g~vv~--~~~~~~~~Gd~V~~~------ 70 (135)
++.+++|.|. |+++||+||++++|+|+.+...... .+ .++.. +.+.+|+|++ +++++|++||||+..
T Consensus 14 l~~~~~~~P~-~~~~eVlI~v~a~gi~~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg 92 (368)
T TIGR02818 14 LKIEEVDVEM-PQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHEGAGIVEAVGEGVTSVKVGDHVIPLYTAECG 92 (368)
T ss_pred eEEEEecCCC-CCCCeEEEEEEEecccHHHHHHhcCCCCCCCCCeeeccccEEEEEEECCCCccCCCCCEEEEcCCCCCC
Confidence 3445666553 7899999999999999975433321 11 11233 4478898864 678899999999752
Q ss_pred ---------------------------------------------CCeeeEEEecCCCceEEcCCCCCChhhhhhccChH
Q 048381 71 ---------------------------------------------TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMP 105 (135)
Q Consensus 71 ---------------------------------------------g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~ 105 (135)
|+|+||++++.+. ++++|++ +++++++ .+.++
T Consensus 93 ~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~-~~~lP~~-l~~~~aa-~l~~~ 169 (368)
T TIGR02818 93 ECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEIS-LAKINPA-APLEEVC-LLGCG 169 (368)
T ss_pred CChhhhCCCcccccCcccccccccccCCccccccCCCcccccccCccceeeEEechhh-eEECCCC-CCHHHhh-hhcch
Confidence 4799999999998 9999984 7877654 57889
Q ss_pred HHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 106 GMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 106 ~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
++|||+++.+.+++++|++|||+|+ |++|
T Consensus 170 ~~ta~~a~~~~~~~~~g~~VlV~G~-G~iG 198 (368)
T TIGR02818 170 VTTGIGAVLNTAKVEEGDTVAVFGL-GGIG 198 (368)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEECC-CHHH
Confidence 9999999988889999999999975 7765
No 13
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=99.84 E-value=4.6e-20 Score=143.70 Aligned_cols=127 Identities=21% Similarity=0.192 Sum_probs=97.9
Q ss_pred eeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC-C--CCCCC-cccceEEEEEe--cCCCCCCCCCEEEEc-------
Q 048381 4 TSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK-H--EDNGP-IEGFGVARVVD--LGHPEFKKGDLVWGT------- 70 (135)
Q Consensus 4 ~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~-~--~~~~~-~~g~~~g~vv~--~~~~~~~~Gd~V~~~------- 70 (135)
+.+++|.| +|++|||+||+.++|||+.+...+.. . ..++. ++.+++|+|++ +++++|++||||+..
T Consensus 16 ~l~~~~~p-~~~~~evlIkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~c~~ 94 (369)
T cd08301 16 VIEEVEVA-PPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRILGHEAAGIVESVGEGVTDLKPGDHVLPVFTGECKE 94 (369)
T ss_pred EEEEeeCC-CCCCCeEEEEEEEEeeCchhHHHhcCCCCCCCCCcccccccceEEEEeCCCCCccccCCEEEEccCCCCCC
Confidence 44455544 37999999999999999975433221 1 11232 34478898875 678899999999862
Q ss_pred ---------------------------------------------CCeeeEEEecCCCceEEcCCCCCChhhhhhccChH
Q 048381 71 ---------------------------------------------TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMP 105 (135)
Q Consensus 71 ---------------------------------------------g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~ 105 (135)
|+|+||+++++.. ++++|++ +++++++ .+.++
T Consensus 95 c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~-~~~iP~~-~~~~~aa-~~~~~ 171 (369)
T cd08301 95 CRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTVVHVGC-VAKINPE-APLDKVC-LLSCG 171 (369)
T ss_pred CchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeEEEEeccc-EEECCCC-CCHHHhh-hhcch
Confidence 5799999999998 9999984 7776654 57788
Q ss_pred HHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 106 GMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 106 ~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
+.|||+++.+..++++|++|||+|+ |++|
T Consensus 172 ~~ta~~~~~~~~~~~~g~~VlV~G~-g~vG 200 (369)
T cd08301 172 VSTGLGAAWNVAKVKKGSTVAIFGL-GAVG 200 (369)
T ss_pred hhHHHHHHHhhcCCCCCCEEEEECC-CHHH
Confidence 9999999988889999999999975 7765
No 14
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=99.83 E-value=8.7e-20 Score=142.44 Aligned_cols=128 Identities=22% Similarity=0.267 Sum_probs=98.3
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC-CC-CCCCccc-ceEEEEEe--cCCCCCCCCCEEEEc-------
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK-HE-DNGPIEG-FGVARVVD--LGHPEFKKGDLVWGT------- 70 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~-~~-~~~~~~g-~~~g~vv~--~~~~~~~~Gd~V~~~------- 70 (135)
++.+++|.|. |+++||+||+.++|||+.+...+.. .+ .++...| +.+|+|++ +++++|++||||++.
T Consensus 21 l~~~~~~~P~-~~~~evlV~v~~~gi~~~D~~~~~g~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~ 99 (371)
T cd08281 21 LVIEEVELDP-PGPGEVLVKIAAAGLCHSDLSVINGDRPRPLPMALGHEAAGVVVEVGEGVTDLEVGDHVVLVFVPSCGH 99 (371)
T ss_pred ceEEEeecCC-CCCCeEEEEEEEEeeCccchHhhcCCCCCCCCccCCccceeEEEEeCCCCCcCCCCCEEEEccCCCCCC
Confidence 3445566543 7899999999999999975433322 11 1233444 78898865 678889999999852
Q ss_pred --------------------------------------------CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHH
Q 048381 71 --------------------------------------------TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPG 106 (135)
Q Consensus 71 --------------------------------------------g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~ 106 (135)
|+|+||++++++. ++++|++ ++.++++ .+.+++
T Consensus 100 c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~g~G~~aey~~v~~~~-~~~lP~~-l~~~~aa-~~~~~~ 176 (371)
T cd08281 100 CRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRS-VVKIDKD-VPLEIAA-LFGCAV 176 (371)
T ss_pred CccccCCCcccccCccccccccccccCcccccccCcccccccCcccceeeEEecccc-eEECCCC-CChHHhh-hhcchH
Confidence 4799999999998 9999985 7777654 577889
Q ss_pred HHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 107 MIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 107 ~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
+|||+++.+.+++++|++|||+|+ |++|
T Consensus 177 ~ta~~~~~~~~~i~~g~~VlV~G~-G~vG 204 (371)
T cd08281 177 LTGVGAVVNTAGVRPGQSVAVVGL-GGVG 204 (371)
T ss_pred HHHHHHHHhccCCCCCCEEEEECC-CHHH
Confidence 999999988889999999999985 7765
No 15
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=99.83 E-value=7.6e-20 Score=139.94 Aligned_cols=129 Identities=16% Similarity=0.235 Sum_probs=100.0
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCC-C--CCC-CcccceEEEEEe--cCCCCCCCCCEEEEc------
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKH-E--DNG-PIEGFGVARVVD--LGHPEFKKGDLVWGT------ 70 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~-~--~~~-~~~g~~~g~vv~--~~~~~~~~Gd~V~~~------ 70 (135)
++..++|.|. |+++||+||++++++|+.+...+... . .++ ..+.+++|+|+. +++++|++||+|+++
T Consensus 17 ~~~~~~~~p~-~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~ 95 (336)
T TIGR02817 17 LVDIDLPKPK-PGGRDLLVEVKAISVNPVDTKVRARMAPEAGQPKILGWDAAGVVVAVGDEVTLFKPGDEVWYAGDIDRP 95 (336)
T ss_pred ceecccCCCC-CCCCEEEEEEEEEEcChHHHHHHcCCCCCCCCCcccceeeEEEEEEeCCCCCCCCCCCEEEEcCCCCCC
Confidence 3444555443 79999999999999999654322111 1 112 234478888864 677899999999975
Q ss_pred CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCC-----CCEEEEecCCCCCC
Q 048381 71 TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKK-----GEYVFVSAASGAVG 135 (135)
Q Consensus 71 g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~-----g~~VlV~ga~g~vG 135 (135)
|+|++|+.++.+. ++++|++ ++.++++ .++++++|||++|.+..++++ |++|||+||+|++|
T Consensus 96 g~~~~~~~v~~~~-~~~ip~~-~~~~~aa-~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg 162 (336)
T TIGR02817 96 GSNAEFHLVDERI-VGHKPKS-LSFAEAA-ALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVG 162 (336)
T ss_pred CcccceEEEcHHH-cccCCCC-CCHHHHh-hhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHH
Confidence 6899999999998 9999984 7776654 588999999999988888887 99999999988875
No 16
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=99.83 E-value=1.6e-19 Score=140.76 Aligned_cols=127 Identities=22% Similarity=0.221 Sum_probs=97.2
Q ss_pred eeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC-CC--CCCCc-ccceEEEEEe--cCCCCCCCCCEEEEc-------
Q 048381 4 TSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK-HE--DNGPI-EGFGVARVVD--LGHPEFKKGDLVWGT------- 70 (135)
Q Consensus 4 ~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~-~~--~~~~~-~g~~~g~vv~--~~~~~~~~Gd~V~~~------- 70 (135)
+.+++|.|. |+++||+||++++|+|+.+...... .+ .++.. +.+.+|+|++ +++++|++||+|++.
T Consensus 16 ~~~~~~~P~-~~~~eVlIrv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~ 94 (368)
T cd08300 16 SIEEVEVAP-PKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVILGHEGAGIVESVGEGVTSVKPGDHVIPLYTPECGE 94 (368)
T ss_pred EEEEeecCC-CCCCEEEEEEEEEEechhhHHHhcCCCccCCCCceeccceeEEEEEeCCCCccCCCCCEEEEcCCCCCCC
Confidence 344555543 7999999999999999965432221 11 12223 4478898865 678889999999853
Q ss_pred --------------------------------------------CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHH
Q 048381 71 --------------------------------------------TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPG 106 (135)
Q Consensus 71 --------------------------------------------g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~ 106 (135)
|+|+||++++++. ++++|++ +++++++ .+.+++
T Consensus 95 C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~-~~~iP~~-l~~~~aa-~l~~~~ 171 (368)
T cd08300 95 CKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSCKGKPIYHFMGTSTFSEYTVVAEIS-VAKINPE-APLDKVC-LLGCGV 171 (368)
T ss_pred ChhhcCCCcCcCCCccccccccccCCCccccccCCcccccccccccceeEEEEchhc-eEeCCCC-CChhhhh-hhccch
Confidence 4799999999998 9999984 7776654 577889
Q ss_pred HHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 107 MIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 107 ~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
+|||+++.+.+++++|++|||+|+ |++|
T Consensus 172 ~ta~~a~~~~~~~~~g~~VlV~G~-G~vG 199 (368)
T cd08300 172 TTGYGAVLNTAKVEPGSTVAVFGL-GAVG 199 (368)
T ss_pred hhhHHHHHHhcCCCCCCEEEEECC-CHHH
Confidence 999999988889999999999975 7765
No 17
>PLN02827 Alcohol dehydrogenase-like
Probab=99.82 E-value=2.2e-19 Score=140.80 Aligned_cols=126 Identities=19% Similarity=0.187 Sum_probs=96.5
Q ss_pred eeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCCCCCC-CcccceEEEEEe--cCCCCCCCCCEEEEc-----------
Q 048381 5 SATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKHEDNG-PIEGFGVARVVD--LGHPEFKKGDLVWGT----------- 70 (135)
Q Consensus 5 ~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~~~~~-~~~g~~~g~vv~--~~~~~~~~Gd~V~~~----------- 70 (135)
.+++|.|. |++|||+||+.++|+|+.+...+.....++ .++.+.+|+|+. +++++|++||+|+..
T Consensus 27 ~~e~~~P~-~~~~eVlVkv~~~gic~sD~~~~~g~~~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~C~~C 105 (378)
T PLN02827 27 MEEVEVSP-PQPLEIRIKVVSTSLCRSDLSAWESQALFPRIFGHEASGIVESIGEGVTEFEKGDHVLTVFTGECGSCRHC 105 (378)
T ss_pred EEEeecCC-CCCCEEEEEEEEEecChhHHHHhcCCCCCCeeecccceEEEEEcCCCCcccCCCCEEEEecCCCCCCChhh
Confidence 34455443 799999999999999997543332211122 344578898865 678899999999852
Q ss_pred ----------------------------------------CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHH
Q 048381 71 ----------------------------------------TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAW 110 (135)
Q Consensus 71 ----------------------------------------g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~ 110 (135)
|+|+||+.++++. ++++|++ +++++++ .+.++..|+|
T Consensus 106 ~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aeyv~v~~~~-~~~iP~~-l~~~~aa-~l~~~~~~a~ 182 (378)
T PLN02827 106 ISGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGC-AVKVDPL-APLHKIC-LLSCGVAAGL 182 (378)
T ss_pred hCcCcccccCccccccccccCCCcccccccCcccccccccccceeeEEechhh-eEECCCC-CCHHHhh-hhcchhHhhH
Confidence 5799999999998 9999985 7776543 4777888999
Q ss_pred HHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 111 AGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 111 ~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
+++.+.+++++|++|||+|+ |++|
T Consensus 183 ~~~~~~~~~~~g~~VlV~G~-G~vG 206 (378)
T PLN02827 183 GAAWNVADVSKGSSVVIFGL-GTVG 206 (378)
T ss_pred HHHHhhcCCCCCCEEEEECC-CHHH
Confidence 98877788999999999985 7765
No 18
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=99.82 E-value=2e-19 Score=138.69 Aligned_cols=127 Identities=13% Similarity=0.069 Sum_probs=97.3
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC-CC--CCCCc-ccceEEEEEe--cCCCCCCCCCEEEE-------
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK-HE--DNGPI-EGFGVARVVD--LGHPEFKKGDLVWG------- 69 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~-~~--~~~~~-~g~~~g~vv~--~~~~~~~~Gd~V~~------- 69 (135)
++.+++|.|. |+++||+||+.++|+|+.+...... .+ .++.+ +.+++|+|+. +++++|++||+|+.
T Consensus 15 l~~~~~p~P~-~~~~evlVkv~~~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~c 93 (329)
T TIGR02822 15 LRFVERPVPR-PGPGELLVRVRACGVCRTDLHVSEGDLPVHRPRVTPGHEVVGEVAGRGADAGGFAVGDRVGIAWLRRTC 93 (329)
T ss_pred ceEEeCCCCC-CCCCeEEEEEEEEeecchhHHHHcCCCCCCCCCccCCcceEEEEEEECCCCcccCCCCEEEEcCccCcC
Confidence 4455666554 7999999999999999975433322 11 11223 4478898864 67889999999973
Q ss_pred ------------------------cCCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEE
Q 048381 70 ------------------------TTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYV 125 (135)
Q Consensus 70 ------------------------~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~V 125 (135)
.|+|+||+.++.+. ++++|++ +++++++ .+.++++|||+++. .+++++|++|
T Consensus 94 ~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~-~~~lP~~-~~~~~aa-~l~~~~~ta~~~~~-~~~~~~g~~V 169 (329)
T TIGR02822 94 GVCRYCRRGAENLCPASRYTGWDTDGGYAEYTTVPAAF-AYRLPTG-YDDVELA-PLLCAGIIGYRALL-RASLPPGGRL 169 (329)
T ss_pred CCChHHhCcCcccCCCcccCCcccCCcceeEEEecccc-EEECCCC-CCHHHhH-HHhccchHHHHHHH-hcCCCCCCEE
Confidence 27899999999998 9999984 7776654 57888999999996 5789999999
Q ss_pred EEecCCCCCC
Q 048381 126 FVSAASGAVG 135 (135)
Q Consensus 126 lV~ga~g~vG 135 (135)
||+|+ |++|
T Consensus 170 lV~G~-g~iG 178 (329)
T TIGR02822 170 GLYGF-GGSA 178 (329)
T ss_pred EEEcC-CHHH
Confidence 99997 6654
No 19
>PLN02740 Alcohol dehydrogenase-like
Probab=99.82 E-value=1.9e-19 Score=141.06 Aligned_cols=127 Identities=22% Similarity=0.223 Sum_probs=97.5
Q ss_pred eeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCC----CCCCCc-ccceEEEEEe--cCCCCCCCCCEEEE-------
Q 048381 4 TSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKH----EDNGPI-EGFGVARVVD--LGHPEFKKGDLVWG------- 69 (135)
Q Consensus 4 ~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~----~~~~~~-~g~~~g~vv~--~~~~~~~~Gd~V~~------- 69 (135)
+.+++|.|. |+++||+||++++|+|+.+...+... ..++.. +.+.+|+|+. +++++|++||||++
T Consensus 24 ~~~e~~~P~-~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg 102 (381)
T PLN02740 24 VMEEIRVDP-PQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEGVEDLKAGDHVIPIFNGECG 102 (381)
T ss_pred EEEEeeCCC-CCCCeEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeCCCCCcCCCCCEEEecCCCCCC
Confidence 345566553 79999999999999999654332211 112333 4478898865 66788999999985
Q ss_pred -----------------------------------------------cCCeeeEEEecCCCceEEcCCCCCChhhhhhcc
Q 048381 70 -----------------------------------------------TTGWEEYSVIKNPEGLFKIHQTELPLSYYSGIL 102 (135)
Q Consensus 70 -----------------------------------------------~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l 102 (135)
.|+|+||++++.+. ++++|++ ++.++++ .+
T Consensus 103 ~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~-~~~iP~~-~~~~~aa-~l 179 (381)
T PLN02740 103 DCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSAC-VVKIDPN-APLKKMS-LL 179 (381)
T ss_pred CChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEehHH-eEECCCC-CCHHHhh-hh
Confidence 26799999999998 9999985 7776654 57
Q ss_pred ChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 103 GMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 103 ~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
.+++.|||+++.+.+++++|++|||+|+ |++|
T Consensus 180 ~~~~~ta~~~~~~~~~~~~g~~VlV~G~-G~vG 211 (381)
T PLN02740 180 SCGVSTGVGAAWNTANVQAGSSVAIFGL-GAVG 211 (381)
T ss_pred cccchhhHHHHHhccCCCCCCEEEEECC-CHHH
Confidence 7889999999988889999999999986 7765
No 20
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=99.82 E-value=1.5e-19 Score=135.60 Aligned_cols=125 Identities=24% Similarity=0.327 Sum_probs=102.2
Q ss_pred eecccCCCCCCcEEEEEEEEeeCHHHHhhhcCC----CCCCCccc-ceEEEEEe--cCCCCCCCCCEEEEc----CCeee
Q 048381 7 TVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKH----EDNGPIEG-FGVARVVD--LGHPEFKKGDLVWGT----TGWEE 75 (135)
Q Consensus 7 ~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~----~~~~~~~g-~~~g~vv~--~~~~~~~~Gd~V~~~----g~~~~ 75 (135)
.+++|. +..+||+||..|+-|||.|..++.+. ++.+.++| +++|+|+. ++++.|++||+|+-. |+|++
T Consensus 39 ~~~~p~-~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv~vGs~vkgfk~Gd~VIp~~a~lGtW~t 117 (354)
T KOG0025|consen 39 NLELPA-VPGSDVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVVAVGSNVKGFKPGDWVIPLSANLGTWRT 117 (354)
T ss_pred cccCCC-CCCCceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEEEecCCcCccCCCCeEeecCCCCcccee
Confidence 344333 45556999999999999876554321 22245666 79999964 678889999999964 89999
Q ss_pred EEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 76 YSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 76 ~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
|.+.+++. ++++++. ++++.|+ ++.++..|||+.|.+.-++++||+|.-.||.|+||
T Consensus 118 ~~v~~e~~-Li~vd~~-~pl~~AA-T~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG 174 (354)
T KOG0025|consen 118 EAVFSESD-LIKVDKD-IPLASAA-TLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVG 174 (354)
T ss_pred eEeecccc-eEEcCCc-CChhhhh-eeccCchHHHHHHHHHHhcCCCCeeeecCcccHHH
Confidence 99999998 9999984 8887764 79999999999999999999999999999999987
No 21
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=99.82 E-value=2.4e-19 Score=139.27 Aligned_cols=126 Identities=17% Similarity=0.111 Sum_probs=96.8
Q ss_pred eeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCC-C-CCCCc-ccceEEEEEe--cCCCCCCCCCEEEE----------
Q 048381 5 SATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKH-E-DNGPI-EGFGVARVVD--LGHPEFKKGDLVWG---------- 69 (135)
Q Consensus 5 ~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~-~-~~~~~-~g~~~g~vv~--~~~~~~~~Gd~V~~---------- 69 (135)
.+++|.|. |++|||+||+.++|+|+.+....... . .++.+ +.+++|+|+. +++++|++||+|+.
T Consensus 16 ~~~~~~p~-~~~~evlV~v~~~gi~~~D~~~~~g~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~c~ 94 (358)
T TIGR03451 16 LETIVVPD-PGPGEVIVDIQACGVCHTDLHYREGGINDEFPFLLGHEAAGVVEAVGEGVTDVAPGDYVVLNWRAVCGQCR 94 (358)
T ss_pred EEEEECCC-CCCCeEEEEEEEEeecHHHHHHhcCCccccCCcccccceEEEEEEeCCCCcccCCCCEEEEccCCCCCCCh
Confidence 34555443 79999999999999999754333221 1 12223 4478898864 67889999999975
Q ss_pred ---------------------------------cCCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhh
Q 048381 70 ---------------------------------TTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEI 116 (135)
Q Consensus 70 ---------------------------------~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~ 116 (135)
.|+|+||+.++++. ++++|++ ++.+.++ .+.++++|||.++.+.
T Consensus 95 ~c~~g~~~~c~~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~-~~~ip~~-~~~~~aa-~l~~~~~ta~~~~~~~ 171 (358)
T TIGR03451 95 ACKRGRPWYCFDTHNATQKMTLTDGTELSPALGIGAFAEKTLVHAGQ-CTKVDPA-ADPAAAG-LLGCGVMAGLGAAVNT 171 (358)
T ss_pred HHhCcCcccCcCccccccccccccCcccccccccccccceEEEehhh-eEECCCC-CChhHhh-hhcccchhhHHHHHhc
Confidence 27799999999998 9999985 7776544 5777899999998888
Q ss_pred cCCCCCCEEEEecCCCCCC
Q 048381 117 RAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 117 ~~~~~g~~VlV~ga~g~vG 135 (135)
+++++|++|||+|+ |++|
T Consensus 172 ~~~~~g~~VlV~G~-g~vG 189 (358)
T TIGR03451 172 GGVKRGDSVAVIGC-GGVG 189 (358)
T ss_pred cCCCCCCEEEEECC-CHHH
Confidence 89999999999975 7765
No 22
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=99.81 E-value=3.8e-19 Score=136.74 Aligned_cols=127 Identities=20% Similarity=0.201 Sum_probs=96.1
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhh-cCCC--C-CCCc-ccceEEEEEe--cCCCCCCCCCEEEE------
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILM-TKHE--D-NGPI-EGFGVARVVD--LGHPEFKKGDLVWG------ 69 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~-~~~~--~-~~~~-~g~~~g~vv~--~~~~~~~~Gd~V~~------ 69 (135)
++.+++|.|. |+++||+||+.++|+|+.+...+ .... . ++.. +.+++|+|+. +++++|++||+|+.
T Consensus 12 l~~~~~~~p~-~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c 90 (339)
T cd08239 12 VELREFPVPV-PGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHFRVGDRVMVYHYVGC 90 (339)
T ss_pred eEEEecCCCC-CCCCeEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccCCCCCEEEECCCCCC
Confidence 4445566554 79999999999999998643322 1111 1 1233 4478898864 67889999999975
Q ss_pred -------------------------cCCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCE
Q 048381 70 -------------------------TTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEY 124 (135)
Q Consensus 70 -------------------------~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~ 124 (135)
.|+|+||++++.+. ++++|++ ++.++++ .+.++++|||+++.+ ..+++|++
T Consensus 91 ~~c~~c~~g~~~~c~~~~~~~g~~~~G~~ae~~~v~~~~-~~~~P~~-~~~~~aa-~l~~~~~ta~~~l~~-~~~~~g~~ 166 (339)
T cd08239 91 GACRNCRRGWMQLCTSKRAAYGWNRDGGHAEYMLVPEKT-LIPLPDD-LSFADGA-LLLCGIGTAYHALRR-VGVSGRDT 166 (339)
T ss_pred CCChhhhCcCcccCcCcccccccCCCCcceeEEEechHH-eEECCCC-CCHHHhh-hhcchHHHHHHHHHh-cCCCCCCE
Confidence 26799999999998 9999985 7776654 578899999999954 67899999
Q ss_pred EEEecCCCCCC
Q 048381 125 VFVSAASGAVG 135 (135)
Q Consensus 125 VlV~ga~g~vG 135 (135)
|||+|+ |++|
T Consensus 167 vlV~G~-G~vG 176 (339)
T cd08239 167 VLVVGA-GPVG 176 (339)
T ss_pred EEEECC-CHHH
Confidence 999975 7765
No 23
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=99.81 E-value=4e-19 Score=138.49 Aligned_cols=127 Identities=20% Similarity=0.209 Sum_probs=97.1
Q ss_pred eeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC-C--CCCCCc-ccceEEEEEe--cCCCCCCCCCEEEE--------
Q 048381 4 TSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK-H--EDNGPI-EGFGVARVVD--LGHPEFKKGDLVWG-------- 69 (135)
Q Consensus 4 ~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~-~--~~~~~~-~g~~~g~vv~--~~~~~~~~Gd~V~~-------- 69 (135)
+..++|.|. |+++||+||++++|||+.+...+.. . ..++.+ +.+.+|+|++ +++++|++||+|+.
T Consensus 26 ~~~~~~~p~-~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~~Cg 104 (360)
T PLN02586 26 SPFHFSRRE-NGDEDVTVKILYCGVCHSDLHTIKNEWGFTRYPIVPGHEIVGIVTKLGKNVKKFKEGDRVGVGVIVGSCK 104 (360)
T ss_pred eEEeecCCC-CCCCeEEEEEEEecCChhhHhhhcCCcCCCCCCccCCcceeEEEEEECCCCCccCCCCEEEEccccCcCC
Confidence 444555543 7999999999999999965432221 1 112333 4478898864 77889999999973
Q ss_pred ------------------------------cCCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCC
Q 048381 70 ------------------------------TTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAP 119 (135)
Q Consensus 70 ------------------------------~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~ 119 (135)
.|+|+||++++++. ++++|++ +++++++ .+.+.++|||+++.+...+
T Consensus 105 ~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~-~~~lP~~-ls~~~aa-~l~~~~~ta~~al~~~~~~ 181 (360)
T PLN02586 105 SCESCDQDLENYCPKMIFTYNSIGHDGTKNYGGYSDMIVVDQHF-VLRFPDN-LPLDAGA-PLLCAGITVYSPMKYYGMT 181 (360)
T ss_pred CCccccCCCcccCCCccccccccccCCCcCCCccceEEEEchHH-eeeCCCC-CCHHHhh-hhhcchHHHHHHHHHhccc
Confidence 26799999999998 9999985 7877654 5888899999999877778
Q ss_pred CCCCEEEEecCCCCCC
Q 048381 120 KKGEYVFVSAASGAVG 135 (135)
Q Consensus 120 ~~g~~VlV~ga~g~vG 135 (135)
++|++|||.|+ |++|
T Consensus 182 ~~g~~VlV~G~-G~vG 196 (360)
T PLN02586 182 EPGKHLGVAGL-GGLG 196 (360)
T ss_pred CCCCEEEEECC-CHHH
Confidence 89999999875 7765
No 24
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=99.81 E-value=6.3e-19 Score=137.34 Aligned_cols=127 Identities=22% Similarity=0.230 Sum_probs=97.6
Q ss_pred eeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC-C-CCCCCc-ccceEEEEEe--cCCCCCCCCCEEEEc--------
Q 048381 4 TSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK-H-EDNGPI-EGFGVARVVD--LGHPEFKKGDLVWGT-------- 70 (135)
Q Consensus 4 ~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~-~-~~~~~~-~g~~~g~vv~--~~~~~~~~Gd~V~~~-------- 70 (135)
+.+++|.|. |+++||+||+.++|+|+.+...... . ..++.. +.+.+|+|+. +++++|++||+|++.
T Consensus 16 ~~~~~~~p~-~~~~evlVkv~~~gi~~sD~~~~~g~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~c~~c 94 (365)
T cd08277 16 VIEEIEVAP-PKANEVRIKMLATSVCHTDILAIEGFKATLFPVILGHEGAGIVESVGEGVTNLKPGDKVIPLFIGQCGEC 94 (365)
T ss_pred EEEEEECCC-CCCCEEEEEEEEEeechhhHHHhcCCCCCCCCeecccceeEEEEeeCCCCccCCCCCEEEECCCCCCCCC
Confidence 445555543 7899999999999999965432221 1 112223 4478898865 678899999999863
Q ss_pred ------------------------------------------CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHH
Q 048381 71 ------------------------------------------TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMI 108 (135)
Q Consensus 71 ------------------------------------------g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~T 108 (135)
|+|+||+.++.+. ++++|++ ++.++++ .+.++++|
T Consensus 95 ~~c~~g~~~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~ae~~~v~~~~-~~~lP~~-l~~~~aa-~l~~~~~t 171 (365)
T cd08277 95 SNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENY-VAKIDPA-APLEHVC-LLGCGFST 171 (365)
T ss_pred chhcCcCcccCcCccccccccccCCccccccCCcccccccccccceeeEEEchhh-eEECCCC-CCHHHhh-HhcchhHH
Confidence 5799999999998 9999985 7776654 57889999
Q ss_pred HHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 109 AWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 109 A~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
||+++.+.+++++|++|||+|+ |++|
T Consensus 172 a~~~~~~~~~~~~g~~vlV~G~-g~vG 197 (365)
T cd08277 172 GYGAAWNTAKVEPGSTVAVFGL-GAVG 197 (365)
T ss_pred HHHHHHhhcCCCCCCEEEEECC-CHHH
Confidence 9999988889999999999975 7664
No 25
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=99.80 E-value=4.3e-19 Score=137.13 Aligned_cols=125 Identities=14% Similarity=0.131 Sum_probs=93.3
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhc-C-C----CCCC-CcccceEEEEEecCCCCCCCCCEEEE------
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMT-K-H----EDNG-PIEGFGVARVVDLGHPEFKKGDLVWG------ 69 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~-~-~----~~~~-~~~g~~~g~vv~~~~~~~~~Gd~V~~------ 69 (135)
++.+++|.| ++++|||||++++|||+.+...+. . . ..++ .++.+++|+|++.++++|++||||+.
T Consensus 16 ~~~~~~~~p--~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v~v~~~~vGdrV~~~~~~~c 93 (343)
T PRK09880 16 VAVTEQEIE--WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHSDSSGLKEGQTVAINPSKPC 93 (343)
T ss_pred eEEEecCCC--CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEecCccCCCCCEEEECCCCCC
Confidence 344555543 578999999999999997543321 1 1 1123 23458999998767889999999973
Q ss_pred -----------------------------cCCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCC
Q 048381 70 -----------------------------TTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPK 120 (135)
Q Consensus 70 -----------------------------~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~ 120 (135)
.|+|+||++++++. ++++|++ ++++.+ ++..++.|||+++.+. ...
T Consensus 94 g~c~~c~~g~~~~c~~~~~~g~~~~~~~~~G~~aey~~v~~~~-~~~~P~~-l~~~~a--a~~~~~~~a~~al~~~-~~~ 168 (343)
T PRK09880 94 GHCKYCLSHNENQCTTMRFFGSAMYFPHVDGGFTRYKVVDTAQ-CIPYPEK-ADEKVM--AFAEPLAVAIHAAHQA-GDL 168 (343)
T ss_pred cCChhhcCCChhhCCCcceeecccccCCCCCceeeeEEechHH-eEECCCC-CCHHHH--HhhcHHHHHHHHHHhc-CCC
Confidence 27899999999998 9999984 776543 3566788999999764 556
Q ss_pred CCCEEEEecCCCCCC
Q 048381 121 KGEYVFVSAASGAVG 135 (135)
Q Consensus 121 ~g~~VlV~ga~g~vG 135 (135)
+|++|+|+|+ |++|
T Consensus 169 ~g~~VlV~G~-G~vG 182 (343)
T PRK09880 169 QGKRVFVSGV-GPIG 182 (343)
T ss_pred CCCEEEEECC-CHHH
Confidence 8999999986 7775
No 26
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=99.80 E-value=1.8e-18 Score=131.89 Aligned_cols=130 Identities=46% Similarity=0.730 Sum_probs=99.0
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCCCC-------CCCcccceEEEEEecCCCCCCCCCEEEEcCCeee
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKHED-------NGPIEGFGVARVVDLGHPEFKKGDLVWGTTGWEE 75 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~~~-------~~~~~g~~~g~vv~~~~~~~~~Gd~V~~~g~~~~ 75 (135)
++.+++|.|. |+++||+||+.++++|+.++..+..... ...++.+++|+|+..+..+|++||+|+++++|++
T Consensus 20 ~~~~~~~~p~-~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~~~~~Gd~V~~~~~~~~ 98 (329)
T cd05288 20 FELVEVPLPE-LKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRSPDFKVGDLVSGFLGWQE 98 (329)
T ss_pred eeEEeccCCC-CCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCCCCCCCCCEEecccceEE
Confidence 3445555443 7999999999999999865443322110 0123447889887655557999999999999999
Q ss_pred EEEecC-CCceEEcCCCCCC--hhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 76 YSVIKN-PEGLFKIHQTELP--LSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 76 ~~~~~~-~~~~~~~p~~~~~--~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
|+.++. +. ++++|++ ++ +..++++++++++|||+++.+.+++++|++|||+|++|++|
T Consensus 99 ~~~v~~~~~-~~~lP~~-~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig 159 (329)
T cd05288 99 YAVVDGASG-LRKLDPS-LGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVG 159 (329)
T ss_pred EEEecchhh-cEECCcc-cCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchHH
Confidence 999999 87 9999985 53 33333348889999999998888899999999999988765
No 27
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=99.79 E-value=2.2e-18 Score=134.12 Aligned_cols=126 Identities=18% Similarity=0.181 Sum_probs=96.1
Q ss_pred eeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCC---CCCC-CcccceEEEEEe--cCCCCCCCCCEEEE---------
Q 048381 5 SATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKH---EDNG-PIEGFGVARVVD--LGHPEFKKGDLVWG--------- 69 (135)
Q Consensus 5 ~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~---~~~~-~~~g~~~g~vv~--~~~~~~~~Gd~V~~--------- 69 (135)
.+++|.| +|+++||+||+.++|+|+.+...+... ..++ .++.+.+|+|+. +++++|++||+|+.
T Consensus 24 ~~~~~~p-~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~Vv~vG~~v~~~~~Gd~V~~~~~~~~c~~ 102 (357)
T PLN02514 24 PYTYTLR-KTGPEDVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGVIVGCCGE 102 (357)
T ss_pred EEeecCC-CCCCCcEEEEEEEeccChHHHHhhcCCcCcCCCCccCCceeeEEEEEECCCcccccCCCEEEEcCccccCCC
Confidence 3445544 379999999999999999654333221 1112 334478898864 67889999999963
Q ss_pred -----------------------------cCCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCC
Q 048381 70 -----------------------------TTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPK 120 (135)
Q Consensus 70 -----------------------------~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~ 120 (135)
.|+|+||++++.+. ++++|++ +++++++ .+.+++.|||+++.+....+
T Consensus 103 C~~c~~g~~~~c~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~-~~~iP~~-~~~~~aa-~l~~~~~ta~~al~~~~~~~ 179 (357)
T PLN02514 103 CSPCKSDLEQYCNKRIWSYNDVYTDGKPTQGGFASAMVVDQKF-VVKIPEG-MAPEQAA-PLLCAGVTVYSPLSHFGLKQ 179 (357)
T ss_pred ChhHhCCCcccCCCccccccccccCCccCCCccccEEEEchHH-eEECCCC-CCHHHhh-hhhhhHHHHHHHHHHcccCC
Confidence 27899999999998 9999984 7877654 58889999999998777778
Q ss_pred CCCEEEEecCCCCCC
Q 048381 121 KGEYVFVSAASGAVG 135 (135)
Q Consensus 121 ~g~~VlV~ga~g~vG 135 (135)
+|++|+|+| +|++|
T Consensus 180 ~g~~vlV~G-~G~vG 193 (357)
T PLN02514 180 SGLRGGILG-LGGVG 193 (357)
T ss_pred CCCeEEEEc-ccHHH
Confidence 999999996 47765
No 28
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.78 E-value=3.6e-18 Score=128.86 Aligned_cols=128 Identities=18% Similarity=0.138 Sum_probs=97.5
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCCCCCCCcccceEEEEE--ecCCCCCCCCCEEEEc---CCeeeEE
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKHEDNGPIEGFGVARVV--DLGHPEFKKGDLVWGT---TGWEEYS 77 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~~~~~~~~g~~~g~vv--~~~~~~~~~Gd~V~~~---g~~~~~~ 77 (135)
++.+++|.|. ++++||+||+.++++|+.+.............+.+++|+|+ ++++++|++||+|+++ |+|++|+
T Consensus 14 ~~~~~~~~p~-~~~~ev~v~v~~~~i~~~d~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~g~~~~~~ 92 (305)
T cd08270 14 LRLGEVPDPQ-PAPHEALVRVAAISLNRGELKFAAERPDGAVPGWDAAGVVERAAADGSGPAVGARVVGLGAMGAWAELV 92 (305)
T ss_pred eEEEecCCCC-CCCCEEEEEEEEEecCHHHHHhhccCCCCCcccceeEEEEEEeCCCCCCCCCCCEEEEecCCcceeeEE
Confidence 3344555443 78999999999999998644322211111223457788875 4677889999999985 7999999
Q ss_pred EecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 78 VIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 78 ~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
.++.+. ++++|++ +++++++ ++++.++|||+++.+.... +|++|+|+|++|++|
T Consensus 93 ~v~~~~-~~~ip~~-~~~~~a~-~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~~~g 146 (305)
T cd08270 93 AVPTGW-LAVLPDG-VSFAQAA-TLPVAGVTALRALRRGGPL-LGRRVLVTGASGGVG 146 (305)
T ss_pred EEchHH-eEECCCC-CCHHHHH-HhHhHHHHHHHHHHHhCCC-CCCEEEEECCCcHHH
Confidence 999998 9999984 7877654 5888999999999887765 599999999988765
No 29
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=99.78 E-value=4.5e-18 Score=131.37 Aligned_cols=130 Identities=17% Similarity=0.152 Sum_probs=98.7
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCCC-----CCCCcccceEEEEE--ecCCC-CCCCCCEEEEc----
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKHE-----DNGPIEGFGVARVV--DLGHP-EFKKGDLVWGT---- 70 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~~-----~~~~~~g~~~g~vv--~~~~~-~~~~Gd~V~~~---- 70 (135)
+++.++|.|.+|+++||+||+.++++|+.+........ .+...+.+++|+|+ +++++ +|++||+|++.
T Consensus 15 ~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~~Gd~V~~~~~~~ 94 (352)
T cd08247 15 ITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASEWKVGDEVCGIYPHP 94 (352)
T ss_pred eeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccccCCCCCCEEEEeecCC
Confidence 45555554422599999999999999996543321111 01123446778775 46777 89999999974
Q ss_pred ----CCeeeEEEecCC----CceEEcCCCCCChhhhhhccChHHHHHHHHHHhhc-CCCCCCEEEEecCCCCCC
Q 048381 71 ----TGWEEYSVIKNP----EGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIR-APKKGEYVFVSAASGAVG 135 (135)
Q Consensus 71 ----g~~~~~~~~~~~----~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~-~~~~g~~VlV~ga~g~vG 135 (135)
|+|++|++++.. . ++++|++ +++.+++ .++++++|||+++.+.+ ++++|++|+|+|+++++|
T Consensus 95 ~~~~g~~~~~~~v~~~~~~~~-~~~lP~~-l~~~~aa-~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg 165 (352)
T cd08247 95 YGGQGTLSQYLLVDPKKDKKS-ITRKPEN-ISLEEAA-AWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVG 165 (352)
T ss_pred CCCCceeeEEEEEccccccce-eEECCCC-CCHHHHH-HhHHHHHHHHHHHHHhhhccCCCCeEEEECCCchHH
Confidence 789999999987 6 8999984 7777654 57889999999998887 899999999999988765
No 30
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.78 E-value=1.5e-18 Score=131.79 Aligned_cols=124 Identities=23% Similarity=0.261 Sum_probs=96.9
Q ss_pred eeecccCCCCCCcEEEEEEEEeeCHHHH-hhhcCCC--CCCCccc-ceEEEEE--ecCCCCCCCCCEEEE-c--------
Q 048381 6 ATVSLKVAEGSNTVPVKNLYLSCDPYSR-ILMTKHE--DNGPIEG-FGVARVV--DLGHPEFKKGDLVWG-T-------- 70 (135)
Q Consensus 6 ~~~~~~~~p~~~eVlVkv~a~~ln~~~~-~~~~~~~--~~~~~~g-~~~g~vv--~~~~~~~~~Gd~V~~-~-------- 70 (135)
..++.+ +|+++||+||++|+||++.|- .+.+... .++-++| +.+|+|+ +++++.|++||||-. +
T Consensus 27 ~~~~~~-~~g~~dv~vkI~~cGIChsDlH~~~gdwg~s~~PlV~GHEiaG~VvkvGs~V~~~kiGD~vGVg~~~~sC~~C 105 (360)
T KOG0023|consen 27 FSFPVR-EPGENDVLVKIEYCGVCHSDLHAWKGDWGLSKYPLVPGHEIAGVVVKVGSNVTGFKIGDRVGVGWLNGSCLSC 105 (360)
T ss_pred eEcCCC-CCCCCcEEEEEEEEeccchhHHHhhccCCcccCCccCCceeeEEEEEECCCcccccccCeeeeeEEeccccCc
Confidence 444433 489999999999999998643 3332221 2344566 7888885 588999999999952 0
Q ss_pred -----------------------------CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCC
Q 048381 71 -----------------------------TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKK 121 (135)
Q Consensus 71 -----------------------------g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~ 121 (135)
|+|++|+++++.. ++++|++ ++++.+| -+.|++.|.|..|.+ ..+.|
T Consensus 106 E~C~~~~E~yCpk~~~t~~g~~~DGt~~~ggf~~~~~v~~~~-a~kIP~~-~pl~~aA-PlLCaGITvYspLk~-~g~~p 181 (360)
T KOG0023|consen 106 EYCKSGNENYCPKMHFTYNGVYHDGTITQGGFQEYAVVDEVF-AIKIPEN-LPLASAA-PLLCAGITVYSPLKR-SGLGP 181 (360)
T ss_pred cccccCCcccCCceeEeccccccCCCCccCccceeEEEeeee-EEECCCC-CChhhcc-chhhcceEEeehhHH-cCCCC
Confidence 5699999999997 9999995 8887765 488999999999976 46789
Q ss_pred CCEEEEecCCCCCC
Q 048381 122 GEYVFVSAASGAVG 135 (135)
Q Consensus 122 g~~VlV~ga~g~vG 135 (135)
|++|-|.|++| +|
T Consensus 182 G~~vgI~GlGG-LG 194 (360)
T KOG0023|consen 182 GKWVGIVGLGG-LG 194 (360)
T ss_pred CcEEEEecCcc-cc
Confidence 99999999965 76
No 31
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=99.78 E-value=3.7e-18 Score=133.94 Aligned_cols=127 Identities=20% Similarity=0.197 Sum_probs=95.0
Q ss_pred eeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC-C--CCCCCc-ccceEEEEEe--cCCCCCCCCCEEEE--------
Q 048381 4 TSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK-H--EDNGPI-EGFGVARVVD--LGHPEFKKGDLVWG-------- 69 (135)
Q Consensus 4 ~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~-~--~~~~~~-~g~~~g~vv~--~~~~~~~~Gd~V~~-------- 69 (135)
+..+++.| .|+++||+||+.++|||+.+...... . ..++.. +.+.+|+|++ +++++|++||+|+.
T Consensus 20 ~~~~~~~p-~~~~~eVlVkV~a~gic~sD~~~~~G~~~~~~~p~i~GhE~aG~Vv~vG~~v~~~~vGdrV~~~~~~~~cg 98 (375)
T PLN02178 20 SPFHFSRR-ENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQ 98 (375)
T ss_pred eEEeecCC-CCCCCeEEEEEEEEcCchHHHHHhcCCCCCCCCCcccCceeeEEEEEECCCCCccCCCCEEEEcCccCCCC
Confidence 34455544 37999999999999999965432221 1 111233 4478898864 67889999999973
Q ss_pred ------------------------------cCCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcC-
Q 048381 70 ------------------------------TTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRA- 118 (135)
Q Consensus 70 ------------------------------~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~- 118 (135)
.|+|+||++++++. ++++|++ +++++++ .+.++++|||+++.+...
T Consensus 99 ~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~-~~~lP~~-ls~~~aa-~l~~~~~ta~~al~~~~~~ 175 (375)
T PLN02178 99 SCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRF-VLSIPDG-LPSDSGA-PLLCAGITVYSPMKYYGMT 175 (375)
T ss_pred CChhHhCcchhcCCCccccccccccCCCcCCCccccEEEEchHH-eEECCCC-CCHHHcc-hhhccchHHHHHHHHhCCC
Confidence 26799999999998 9999985 7877654 578889999999976543
Q ss_pred CCCCCEEEEecCCCCCC
Q 048381 119 PKKGEYVFVSAASGAVG 135 (135)
Q Consensus 119 ~~~g~~VlV~ga~g~vG 135 (135)
.++|++|+|.|+ |++|
T Consensus 176 ~~~g~~VlV~G~-G~vG 191 (375)
T PLN02178 176 KESGKRLGVNGL-GGLG 191 (375)
T ss_pred CCCCCEEEEEcc-cHHH
Confidence 468999999986 7765
No 32
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.78 E-value=1e-18 Score=132.79 Aligned_cols=127 Identities=18% Similarity=0.103 Sum_probs=97.5
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHH-hhhcCC------CCCCCcccceEEEE--EecCCCCCCCCCEEEEc---
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSR-ILMTKH------EDNGPIEGFGVARV--VDLGHPEFKKGDLVWGT--- 70 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~-~~~~~~------~~~~~~~g~~~g~v--v~~~~~~~~~Gd~V~~~--- 70 (135)
++.++.|.|..++|+||+|+++++||+-.|- .+.... +.+..++.+..|.| +++.|+++|+||||+.-
T Consensus 16 i~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk~LkVGDrVaiEpg~ 95 (354)
T KOG0024|consen 16 IRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVKHLKVGDRVAIEPGL 95 (354)
T ss_pred eeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhcccccccccCCeEEecCCC
Confidence 5566666665579999999999999986432 221111 12234566778887 46889999999999841
Q ss_pred ----------------------------CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCC
Q 048381 71 ----------------------------TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKG 122 (135)
Q Consensus 71 ----------------------------g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g 122 (135)
|++++|++.+++. |+|+|++ +++++ +++..+..++|+|.+ ++.+++|
T Consensus 96 ~c~~cd~CK~GrYNlCp~m~f~atpp~~G~la~y~~~~~df-c~KLPd~-vs~ee--GAl~ePLsV~~HAcr-~~~vk~G 170 (354)
T KOG0024|consen 96 PCRDCDFCKEGRYNLCPHMVFCATPPVDGTLAEYYVHPADF-CYKLPDN-VSFEE--GALIEPLSVGVHACR-RAGVKKG 170 (354)
T ss_pred ccccchhhhCcccccCCccccccCCCcCCceEEEEEechHh-eeeCCCC-Cchhh--cccccchhhhhhhhh-hcCcccC
Confidence 6789999999997 9999995 88876 357778889999995 6899999
Q ss_pred CEEEEecCCCCCC
Q 048381 123 EYVFVSAASGAVG 135 (135)
Q Consensus 123 ~~VlV~ga~g~vG 135 (135)
++|||.|| |.+|
T Consensus 171 s~vLV~GA-GPIG 182 (354)
T KOG0024|consen 171 SKVLVLGA-GPIG 182 (354)
T ss_pred CeEEEECC-cHHH
Confidence 99999998 5543
No 33
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=99.77 E-value=1.1e-17 Score=126.96 Aligned_cols=128 Identities=23% Similarity=0.256 Sum_probs=96.1
Q ss_pred eeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCC-C---CCCC-cccceEEEEEecCCCCCCCCCEEEEc--------
Q 048381 4 TSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKH-E---DNGP-IEGFGVARVVDLGHPEFKKGDLVWGT-------- 70 (135)
Q Consensus 4 ~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~-~---~~~~-~~g~~~g~vv~~~~~~~~~Gd~V~~~-------- 70 (135)
+.+++|.|. |+++||+||+.++|+|+.+....... + ..+. .+.+++|+|+..+++.|++||+|++.
T Consensus 16 ~~~~~~~p~-~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~~~~~~~~Gd~V~~~~~~~g~~~ 94 (325)
T cd05280 16 FLRTLPLDD-LPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSSDDPRFREGDEVLVTGYDLGMNT 94 (325)
T ss_pred eEEeCCCCC-CCCCeEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEeCCCCCCCCCEEEEcccccCCCC
Confidence 334555443 78999999999999998654333221 1 1122 34478888876677789999999973
Q ss_pred -CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCC--C-CCCEEEEecCCCCCC
Q 048381 71 -TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAP--K-KGEYVFVSAASGAVG 135 (135)
Q Consensus 71 -g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~--~-~g~~VlV~ga~g~vG 135 (135)
|+|++|+.++.+. ++++|++ ++.++++ .+.+.++|||+++..+.+. + .+++|+|+|++|++|
T Consensus 95 ~g~~~~~~~v~~~~-~~~lp~~-~~~~~aa-~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg 160 (325)
T cd05280 95 DGGFAEYVRVPADW-VVPLPEG-LSLREAM-ILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGGVG 160 (325)
T ss_pred CceeEEEEEEchhh-EEECCCC-CCHHHHH-hhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccHHH
Confidence 7899999999998 9999984 7777654 5888999999999776544 5 467999999988765
No 34
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=99.77 E-value=1.5e-17 Score=126.67 Aligned_cols=129 Identities=24% Similarity=0.272 Sum_probs=98.2
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC-C---CCCCCc-ccceEEEEEecCCCCCCCCCEEEEc-------
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK-H---EDNGPI-EGFGVARVVDLGHPEFKKGDLVWGT------- 70 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~-~---~~~~~~-~g~~~g~vv~~~~~~~~~Gd~V~~~------- 70 (135)
++.+++|.|. |+++||+||++++++|+.+.....+ . ..++.. +.+++|+|+..++..|++||+|++.
T Consensus 14 ~~~~~~~~p~-~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~~~~~~~~~Gd~V~~~~~~~~~~ 92 (323)
T TIGR02823 14 AQVETLDLSD-LPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVSSEDPRFREGDEVIVTGYGLGVS 92 (323)
T ss_pred eeEeecCCCC-CCCCeEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEecCCCCCCCCCEEEEccCCCCCC
Confidence 4556666554 7999999999999999864332211 1 111223 4478899887777789999999974
Q ss_pred --CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhc--CCCCCC-EEEEecCCCCCC
Q 048381 71 --TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIR--APKKGE-YVFVSAASGAVG 135 (135)
Q Consensus 71 --g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~--~~~~g~-~VlV~ga~g~vG 135 (135)
|+|++|+.++.+. ++++|++ +++++++ .+++.++|||.++..+. .+++|+ +|+|+|++|++|
T Consensus 93 ~~g~~~~~~~~~~~~-~~~iP~~-~~~~~aa-~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg 159 (323)
T TIGR02823 93 HDGGYSQYARVPADW-LVPLPEG-LSLREAM-ALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVG 159 (323)
T ss_pred CCccceEEEEEchhh-eEECCCC-CCHHHhh-hhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHHH
Confidence 6899999999998 9999985 7776654 58888999998886543 388998 999999988765
No 35
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.77 E-value=9.7e-18 Score=126.67 Aligned_cols=126 Identities=14% Similarity=0.233 Sum_probs=97.9
Q ss_pred eeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCC-C--CCCC-cccceEEEEEecCCCCCCCCCEEEEc---------CC
Q 048381 6 ATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKH-E--DNGP-IEGFGVARVVDLGHPEFKKGDLVWGT---------TG 72 (135)
Q Consensus 6 ~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~-~--~~~~-~~g~~~g~vv~~~~~~~~~Gd~V~~~---------g~ 72 (135)
++.+.| +++++||+||++++++|+.+....... . .++. .+.+++|+|+..+..++++||+|+++ |+
T Consensus 18 ~~~~~~-~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~~~~~Gd~V~~~~~~~~~~~~g~ 96 (320)
T cd08243 18 REIPIP-EPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLGIEAVGEVEEAPGGTFTPGQRVATAMGGMGRTFDGS 96 (320)
T ss_pred eecCCC-CCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCccccceeEEEEEEecCCCCCCCCEEEEecCCCCCCCCcc
Confidence 344443 378999999999999998643222111 1 1122 34478898876555679999999985 78
Q ss_pred eeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 73 WEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 73 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
|++|+.++.+. ++++|++ +++++++ .++++++|||+++.+..++++|++|||+|++|++|
T Consensus 97 ~~~~~~~~~~~-~~~ip~~-~~~~~aa-~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g 156 (320)
T cd08243 97 YAEYTLVPNEQ-VYAIDSD-LSWAELA-ALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVG 156 (320)
T ss_pred cceEEEcCHHH-cEeCCCC-CCHHHHH-hcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHH
Confidence 99999999997 9999984 7776654 58899999999999988899999999999988765
No 36
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=99.76 E-value=1.1e-17 Score=130.92 Aligned_cols=127 Identities=17% Similarity=0.162 Sum_probs=96.5
Q ss_pred eeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCC-C-CCC-CcccceEEEEEe--cCCCCCCCCCEEEEc--------
Q 048381 4 TSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKH-E-DNG-PIEGFGVARVVD--LGHPEFKKGDLVWGT-------- 70 (135)
Q Consensus 4 ~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~-~-~~~-~~~g~~~g~vv~--~~~~~~~~Gd~V~~~-------- 70 (135)
+.+++|.|. |.++||+||+.++|+|+.+....... . .++ ..+.+++|+|+. ++++.|++||+|+..
T Consensus 21 ~l~~~p~p~-~~~~~vlvkv~~~gi~~~D~~~~~g~~~~~~p~v~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c 99 (373)
T cd08299 21 SIEEIEVAP-PKAHEVRIKIVATGICRSDDHVVSGKLVTPFPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFVPQCGKC 99 (373)
T ss_pred EEEEeecCC-CCCCEEEEEEEEEEcCcccHHHhcCCCCCCCCccccccceEEEEEeCCCCccCCCCCEEEECCCCCCCCC
Confidence 344555443 78999999999999998643322211 1 112 234578898865 567889999999853
Q ss_pred -------------------------------------------CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHH
Q 048381 71 -------------------------------------------TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGM 107 (135)
Q Consensus 71 -------------------------------------------g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~ 107 (135)
|+|+||++++.+. ++++|++ +++++++ .+.++++
T Consensus 100 ~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~e~~~v~~~~-~~~lP~~-l~~~~aa-~~~~~~~ 176 (373)
T cd08299 100 RACLNPESNLCLKNDLGKPQGLMQDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIA-VAKIDAA-APLEKVC-LIGCGFS 176 (373)
T ss_pred hhhhCCCcccCcCcccccccccccCCccccccCCcccccccCCCcccceEEecccc-eeeCCCC-CChHHhh-eeccchH
Confidence 6799999999998 9999984 7776654 5788999
Q ss_pred HHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 108 IAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 108 TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
|||+++.+.+++++|++|+|+| +|++|
T Consensus 177 ta~~~~~~~~~~~~g~~VlV~G-~g~vG 203 (373)
T cd08299 177 TGYGAAVNTAKVTPGSTCAVFG-LGGVG 203 (373)
T ss_pred HHHHHHHhccCCCCCCEEEEEC-CCHHH
Confidence 9999988888999999999996 47664
No 37
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=99.76 E-value=9.5e-18 Score=127.51 Aligned_cols=127 Identities=19% Similarity=0.125 Sum_probs=97.1
Q ss_pred eeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC-CC---CCC-CcccceEEEEEe--cCCCCCCCCCEEEEc---CCe
Q 048381 4 TSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK-HE---DNG-PIEGFGVARVVD--LGHPEFKKGDLVWGT---TGW 73 (135)
Q Consensus 4 ~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~-~~---~~~-~~~g~~~g~vv~--~~~~~~~~Gd~V~~~---g~~ 73 (135)
+.+++|.|. ++++||+||+.++++|+.+...+.. .+ ..+ .++.+++|+|+. +++++|++||+|++. |+|
T Consensus 17 ~~~~~~~p~-~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~g~~ 95 (324)
T cd08292 17 EIGEVPKPT-PGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKGLQVGQRVAVAPVHGTW 95 (324)
T ss_pred EEeecCCCC-CCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCCCCCCCEEEeccCCCcc
Confidence 345555543 7899999999999999864332211 11 112 244578888864 667889999999984 789
Q ss_pred eeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 74 EEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 74 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
++|+.++.+. ++++|++ ++.++++ .+.+.++|||+++. .+++++|++|||+|++|++|
T Consensus 96 ~~~~~~~~~~-~~~ip~~-~~~~~aa-~~~~~~~ta~~~~~-~~~~~~g~~vlI~g~~g~ig 153 (324)
T cd08292 96 AEYFVAPADG-LVPLPDG-ISDEVAA-QLIAMPLSALMLLD-FLGVKPGQWLIQNAAGGAVG 153 (324)
T ss_pred eeEEEEchHH-eEECCCC-CCHHHhh-hccccHHHHHHHHH-hhCCCCCCEEEEcccccHHH
Confidence 9999999997 9999984 7776654 47778999999985 47899999999999988765
No 38
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=99.76 E-value=1.1e-17 Score=129.65 Aligned_cols=128 Identities=20% Similarity=0.149 Sum_probs=94.9
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC-CC--CCCCc-ccceEEEEE--ecCCCC------CCCCCEEEEc
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK-HE--DNGPI-EGFGVARVV--DLGHPE------FKKGDLVWGT 70 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~-~~--~~~~~-~g~~~g~vv--~~~~~~------~~~Gd~V~~~ 70 (135)
++.+++|.|. |+++||+||+.++++|+.+...... .+ .++.. +.+++|+|+ ++++++ |++||+|++.
T Consensus 13 l~~~~~~~p~-~~~~evlV~v~a~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~~~~~~~Gd~V~~~ 91 (361)
T cd08231 13 LEIREVPLPD-LEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGHEGVGRVVALGGGVTTDVAGEPLKVGDRVTWS 91 (361)
T ss_pred CEEEeccCCC-CCCCeEEEEEEEEeecCccHHHhcCCCCCCCCCcccccCCceEEEEeCCCccccccCCccCCCCEEEEc
Confidence 3445555543 7999999999999999864332211 11 12223 447888885 466665 9999999864
Q ss_pred -------------------------------------CCeeeEEEecCC-CceEEcCCCCCChhhhhhccChHHHHHHHH
Q 048381 71 -------------------------------------TGWEEYSVIKNP-EGLFKIHQTELPLSYYSGILGMPGMIAWAG 112 (135)
Q Consensus 71 -------------------------------------g~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~ 112 (135)
|+|+||+.++++ . ++++|++ ++.+.++ .++++++|||++
T Consensus 92 ~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~-~~~lP~~-~~~~~aa-~~~~~~~ta~~a 168 (361)
T cd08231 92 VGAPCGRCYRCLVGDPTKCENRKKYGHEASCDDPHLSGGYAEHIYLPPGTA-IVRVPDN-VPDEVAA-PANCALATVLAA 168 (361)
T ss_pred ccCCCCCChhHhCcCccccccchhccccccccCCCCCcccceEEEecCCCc-eEECCCC-CCHHHHH-HhcCHHHHHHHH
Confidence 789999999986 6 9999985 6665543 577899999999
Q ss_pred HHhhcCCCCCCEEEEecCCCCCC
Q 048381 113 FYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 113 l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
+.+...+++|++|||+| +|++|
T Consensus 169 l~~~~~~~~g~~vlI~g-~g~vG 190 (361)
T cd08231 169 LDRAGPVGAGDTVVVQG-AGPLG 190 (361)
T ss_pred HHhccCCCCCCEEEEEC-CCHHH
Confidence 98888778999999997 47765
No 39
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=99.76 E-value=1.3e-17 Score=126.91 Aligned_cols=128 Identities=23% Similarity=0.251 Sum_probs=95.8
Q ss_pred eeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhc--CC--CCCC-CcccceEEEEEecCCCCCCCCCEEEEc--------
Q 048381 4 TSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMT--KH--EDNG-PIEGFGVARVVDLGHPEFKKGDLVWGT-------- 70 (135)
Q Consensus 4 ~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~--~~--~~~~-~~~g~~~g~vv~~~~~~~~~Gd~V~~~-------- 70 (135)
+.+++|.|. |+++||+||+.++++|+.+..... .. ..++ ..+.+++|+|+..++++|++||+|++.
T Consensus 16 ~~~~~~~p~-~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~~~~~~~~Gd~V~~~~~~~~~~~ 94 (326)
T cd08289 16 SVKNLTLDD-LPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVESNDPRFKPGDEVIVTSYDLGVSH 94 (326)
T ss_pred EEEEccCCC-CCCCeEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEcCCCCCCCCCEEEEcccccCCCC
Confidence 344555543 799999999999999985422111 11 1112 234578899987777789999999974
Q ss_pred -CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcC---CCCCCEEEEecCCCCCC
Q 048381 71 -TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRA---PKKGEYVFVSAASGAVG 135 (135)
Q Consensus 71 -g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~---~~~g~~VlV~ga~g~vG 135 (135)
|+|+||+.++.+. ++++|++ ++.++++ .++++++|||+++....+ ...+++|||+|++|++|
T Consensus 95 ~g~~~~~~~v~~~~-~~~~p~~-~~~~~a~-~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg 160 (326)
T cd08289 95 HGGYSEYARVPAEW-VVPLPKG-LTLKEAM-ILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVG 160 (326)
T ss_pred CCcceeEEEEcHHH-eEECCCC-CCHHHHh-hhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCchHH
Confidence 7899999999998 9999984 7776654 588899999999865433 34578999999988765
No 40
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=99.76 E-value=3.1e-17 Score=124.80 Aligned_cols=128 Identities=22% Similarity=0.178 Sum_probs=98.7
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC-CC--CCC-CcccceEEEEE--ecCCCCCCCCCEEEEc------
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK-HE--DNG-PIEGFGVARVV--DLGHPEFKKGDLVWGT------ 70 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~-~~--~~~-~~~g~~~g~vv--~~~~~~~~~Gd~V~~~------ 70 (135)
++.+++|.|. +.++||+||++++++|+.+...... .+ ..+ ..+.+++|+|+ ++++++|++||+|+++
T Consensus 13 ~~~~~~~~p~-~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~ 91 (332)
T cd08259 13 LQIEEVPDPE-PGPGEVLIKVKAAGVCYRDLLFWKGFFPRGKYPLILGHEIVGTVEEVGEGVERFKPGDRVILYYYIPCG 91 (332)
T ss_pred eEEEEccCCC-CCCCeEEEEEEEEecchhhhHHhcCCCCCCCCCeeccccceEEEEEECCCCccCCCCCEEEECCCCCCc
Confidence 3445566543 7899999999999999865433221 11 112 23447788876 4667889999999974
Q ss_pred ------------------------CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEE
Q 048381 71 ------------------------TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVF 126 (135)
Q Consensus 71 ------------------------g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~Vl 126 (135)
|+|++|+.++.+. ++++|++ +++++++ .++++++|||+++.. +++++++++|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~-~~~ip~~-~~~~~~~-~~~~~~~ta~~~l~~-~~~~~~~~vl 167 (332)
T cd08259 92 KCEYCLSGEENLCRNRAEYGEEVDGGFAEYVKVPERS-LVKLPDN-VSDESAA-LAACVVGTAVHALKR-AGVKKGDTVL 167 (332)
T ss_pred CChhhhCCCcccCCCccccccccCCeeeeEEEechhh-eEECCCC-CCHHHHh-hhccHHHHHHHHHHH-hCCCCCCEEE
Confidence 5799999999998 9999984 7776654 588899999999987 8899999999
Q ss_pred EecCCCCCC
Q 048381 127 VSAASGAVG 135 (135)
Q Consensus 127 V~ga~g~vG 135 (135)
|+||+|++|
T Consensus 168 I~ga~g~vG 176 (332)
T cd08259 168 VTGAGGGVG 176 (332)
T ss_pred EECCCCHHH
Confidence 999998876
No 41
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=99.76 E-value=2.3e-17 Score=130.29 Aligned_cols=117 Identities=18% Similarity=0.161 Sum_probs=86.0
Q ss_pred CCCcEEEEEEEEeeCHHHHhhhcCC-C-CCC-CcccceEEEEEe--cCCCCCCCCCEEEE--------------------
Q 048381 15 GSNTVPVKNLYLSCDPYSRILMTKH-E-DNG-PIEGFGVARVVD--LGHPEFKKGDLVWG-------------------- 69 (135)
Q Consensus 15 ~~~eVlVkv~a~~ln~~~~~~~~~~-~-~~~-~~~g~~~g~vv~--~~~~~~~~Gd~V~~-------------------- 69 (135)
++||||||++++|||+.|...+... . .++ .++.+.+|+|++ +++++|++||||+.
T Consensus 32 ~~~eVlVkv~a~gIcgsD~~~~~g~~~~~~p~i~GhE~~G~V~~vG~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C 111 (393)
T TIGR02819 32 CEHGVILKVVTTNICGSDQHMVRGRTTAPTGLVLGHEITGEVIEKGRDVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVC 111 (393)
T ss_pred CCCeEEEEEEEeeecHHHHHHHCCCCCCCCCccccceeEEEEEEEcCccccccCCCEEEEecccCCCCChHHHCcCcccC
Confidence 3799999999999999765443221 1 113 344588998865 77899999999954
Q ss_pred --------------------cCCeeeEEEecCC--CceEEcCCCCCCh-h--hhhhccChHHHHHHHHHHhhcCCCCCCE
Q 048381 70 --------------------TTGWEEYSVIKNP--EGLFKIHQTELPL-S--YYSGILGMPGMIAWAGFYEIRAPKKGEY 124 (135)
Q Consensus 70 --------------------~g~~~~~~~~~~~--~~~~~~p~~~~~~-~--~~~~~l~~~~~TA~~~l~~~~~~~~g~~ 124 (135)
.|+|+||+++++. + ++++|++ ++. . ..++++..++.|||+++. ..++++|++
T Consensus 112 ~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~-l~~vP~~-~~~~~~~~~~a~l~~~~~ta~~a~~-~~~~~~g~~ 188 (393)
T TIGR02819 112 LNVNPARAGAAYGYVDMGGWVGGQSEYVMVPYADFN-LLKFPDR-DQALEKIRDLTMLSDIFPTGYHGAV-TAGVGPGST 188 (393)
T ss_pred cCCCCCCccceecccccCCCCCceEEEEEechhhCc-eEECCCc-ccccccccceeeeccHHHHHHHHHH-hcCCCCCCE
Confidence 1678999999963 6 9999984 332 1 112357778999999985 478999999
Q ss_pred EEEecCCCCCC
Q 048381 125 VFVSAASGAVG 135 (135)
Q Consensus 125 VlV~ga~g~vG 135 (135)
|||.|+ |++|
T Consensus 189 VlV~G~-G~iG 198 (393)
T TIGR02819 189 VYIAGA-GPVG 198 (393)
T ss_pred EEEECC-CHHH
Confidence 999654 7665
No 42
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=99.76 E-value=7.1e-18 Score=129.41 Aligned_cols=128 Identities=22% Similarity=0.254 Sum_probs=98.2
Q ss_pred eeeeecccCCCCC-CcEEEEEEEEeeCHHHHhhhcCC-C---C----CC-CcccceEEEEEe--cCCCCCCCCCEEEEc-
Q 048381 4 TSATVSLKVAEGS-NTVPVKNLYLSCDPYSRILMTKH-E---D----NG-PIEGFGVARVVD--LGHPEFKKGDLVWGT- 70 (135)
Q Consensus 4 ~~~~~~~~~~p~~-~eVlVkv~a~~ln~~~~~~~~~~-~---~----~~-~~~g~~~g~vv~--~~~~~~~~Gd~V~~~- 70 (135)
..+++|.|. |.+ +||+||+.++|+|+.+....... + . ++ .++.+++|+|+. +++..|++||+|++.
T Consensus 17 ~~~~~~~p~-~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~ 95 (341)
T cd08290 17 QLESYEIPP-PGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGSGVKSLKPGDWVIPLR 95 (341)
T ss_pred EEeecCCCC-CCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCCCCCCCCCCCEEEecC
Confidence 444555543 565 99999999999999654332211 1 1 11 234478888864 567789999999975
Q ss_pred ---CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 71 ---TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 71 ---g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
|+|++|+.++.+. ++++|++ ++.++++ .++++++|||+++.+..++++|++|||+|++|++|
T Consensus 96 ~~~g~~~~~~~v~~~~-~~~lp~~-~~~~~aa-~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg 160 (341)
T cd08290 96 PGLGTWRTHAVVPADD-LIKVPND-VDPEQAA-TLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVG 160 (341)
T ss_pred CCCccchheEeccHHH-eEeCCCC-CCHHHHH-HhhccHHHHHHHHHhhcccCCCCEEEEccchhHHH
Confidence 7899999999997 9999984 7776654 57888999999998888899999999999988765
No 43
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=99.76 E-value=6.4e-18 Score=129.13 Aligned_cols=122 Identities=16% Similarity=0.130 Sum_probs=86.8
Q ss_pred eeeeecccCCCCCCcEEEEEEEEeeCH-HHHhhhcC-C---C--CCCC-cccceEEEEEe--cCCCCCCCCCEEEE----
Q 048381 4 TSATVSLKVAEGSNTVPVKNLYLSCDP-YSRILMTK-H---E--DNGP-IEGFGVARVVD--LGHPEFKKGDLVWG---- 69 (135)
Q Consensus 4 ~~~~~~~~~~p~~~eVlVkv~a~~ln~-~~~~~~~~-~---~--~~~~-~~g~~~g~vv~--~~~~~~~~Gd~V~~---- 69 (135)
+.+++|.|. |++||||||++++|||+ .+...+.. . + .++. .+.+.+|+|++ +++ +|++||||+.
T Consensus 14 ~~~e~~~p~-~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v-~~~vGdrV~~~~~~ 91 (308)
T TIGR01202 14 ELREVTLTP-PSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT-GFRPGDRVFVPGSN 91 (308)
T ss_pred EEEEecCCC-CCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-CCCCCCEEEEeCcc
Confidence 334455443 79999999999999985 44322211 1 1 1233 34489999976 556 6999999985
Q ss_pred --------cCCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 70 --------TTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 70 --------~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
.|+|+||++++++. ++++|++ ++.+. +.+ .+..|||+++.+. ..++++|+|+|+ |++|
T Consensus 92 c~~~~~~~~G~~aey~~v~~~~-~~~ip~~-~~~~~--a~~-~~~~~a~~~~~~~--~~~~~~vlV~G~-G~vG 157 (308)
T TIGR01202 92 CYEDVRGLFGGASKRLVTPASR-VCRLDPA-LGPQG--ALL-ALAATARHAVAGA--EVKVLPDLIVGH-GTLG 157 (308)
T ss_pred ccccccccCCcccceEEcCHHH-ceeCCCC-CCHHH--Hhh-hHHHHHHHHHHhc--ccCCCcEEEECC-CHHH
Confidence 48999999999998 9999984 66542 223 3578999999652 346899999975 7775
No 44
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=99.76 E-value=2e-17 Score=125.90 Aligned_cols=120 Identities=22% Similarity=0.230 Sum_probs=94.9
Q ss_pred CCCCCcEEEEEEEEeeCHHHHhhhcC-CCC---CC-CcccceEEEEEe--cCCCCCCCCCEEEEc---CCeeeEEEecCC
Q 048381 13 AEGSNTVPVKNLYLSCDPYSRILMTK-HED---NG-PIEGFGVARVVD--LGHPEFKKGDLVWGT---TGWEEYSVIKNP 82 (135)
Q Consensus 13 ~p~~~eVlVkv~a~~ln~~~~~~~~~-~~~---~~-~~~g~~~g~vv~--~~~~~~~~Gd~V~~~---g~~~~~~~~~~~ 82 (135)
++.++||+||+.++++|+.+...... .+. .+ ..+.+.+|.|+. ++++++++||+|+++ |+|++|+.++.+
T Consensus 25 ~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~g~~~~~~~v~~~ 104 (334)
T PTZ00354 25 APKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRFKEGDRVMALLPGGGYAEYAVAHKG 104 (334)
T ss_pred CCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCCCCCCCEEEEecCCCceeeEEEecHH
Confidence 37889999999999999864332211 111 11 233467787754 678889999999986 799999999999
Q ss_pred CceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 83 EGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 83 ~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
. ++++|++ ++...++ .+.++++|||+++.+.+++++|++|+|+|++|++|
T Consensus 105 ~-~~~ip~~-~~~~~a~-~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g 154 (334)
T PTZ00354 105 H-VMHIPQG-YTFEEAA-AIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVG 154 (334)
T ss_pred H-cEeCCCC-CCHHHHH-HHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHH
Confidence 8 9999984 7776554 58889999999998888999999999999988875
No 45
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.76 E-value=1.9e-17 Score=126.15 Aligned_cols=128 Identities=20% Similarity=0.105 Sum_probs=98.0
Q ss_pred eeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCC-C---CCC-CcccceEEEEE--ecCCCCCCCCCEEEEc---CCe
Q 048381 4 TSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKH-E---DNG-PIEGFGVARVV--DLGHPEFKKGDLVWGT---TGW 73 (135)
Q Consensus 4 ~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~-~---~~~-~~~g~~~g~vv--~~~~~~~~~Gd~V~~~---g~~ 73 (135)
+.++.+.| +|.++||+||+.++++|+.+....... . .++ ..+.++.|.|+ ++++++|++||+|+++ ++|
T Consensus 16 ~~~~~~~~-~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~g~~ 94 (331)
T cd08273 16 KVVEADLP-EPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFEVGDRVAALTRVGGN 94 (331)
T ss_pred EEeccCCC-CCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccCCCCCEEEEeCCCcce
Confidence 33444443 368899999999999998643332211 1 112 23346778775 5678899999999985 799
Q ss_pred eeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 74 EEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 74 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
++|+.++.+. ++++|++ ++.+.++ .+.++++|||+++.+.+++++|++|+|+|++|++|
T Consensus 95 ~~~~~~~~~~-~~~~p~~-~~~~~a~-~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig 153 (331)
T cd08273 95 AEYINLDAKY-LVPVPEG-VDAAEAV-CLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVG 153 (331)
T ss_pred eeEEEechHH-eEECCCC-CCHHHHH-hhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHH
Confidence 9999999997 9999985 7776654 58889999999998888999999999999988765
No 46
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=99.75 E-value=1.3e-17 Score=127.82 Aligned_cols=124 Identities=19% Similarity=0.166 Sum_probs=93.7
Q ss_pred eecccCCCCCCcEEEEEEEEeeCHHHHhhhcC-CC-----CCCCc-ccceEEEEE--ecCCCCCCCCCEEEEc-------
Q 048381 7 TVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK-HE-----DNGPI-EGFGVARVV--DLGHPEFKKGDLVWGT------- 70 (135)
Q Consensus 7 ~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~-~~-----~~~~~-~g~~~g~vv--~~~~~~~~~Gd~V~~~------- 70 (135)
++++| +++++||+||+.++++|+.+...... .. .++.. +.+++|+|+ ++++++|++||+|++.
T Consensus 17 ~~~~~-~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~ 95 (340)
T cd05284 17 DVPVP-EPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLKEGDPVVVHPPWGCGT 95 (340)
T ss_pred eCCCC-CCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCcCcCCCEEEEcCCCCCCC
Confidence 44443 27899999999999999865432211 11 11223 447888885 4677889999999863
Q ss_pred -----------------------CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhh-cCCCCCCEEE
Q 048381 71 -----------------------TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEI-RAPKKGEYVF 126 (135)
Q Consensus 71 -----------------------g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~-~~~~~g~~Vl 126 (135)
|+|++|+.++.+. ++++|++ +++++++ .+++.++|||+++.+. .++++|++||
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~-~~~~P~~-ls~~~aa-~l~~~~~ta~~~l~~~~~~~~~~~~vl 172 (340)
T cd05284 96 CRYCRRGEENYCENARFPGIGTDGGFAEYLLVPSRR-LVKLPRG-LDPVEAA-PLADAGLTAYHAVKKALPYLDPGSTVV 172 (340)
T ss_pred ChHHhCcCcccCCCCcccCccCCCcceeeEEecHHH-eEECCCC-CCHHHhh-hhcchHHHHHHHHHHhcccCCCCCEEE
Confidence 6899999999998 9999985 7776654 5888999999999876 5788999999
Q ss_pred EecCCCCCC
Q 048381 127 VSAASGAVG 135 (135)
Q Consensus 127 V~ga~g~vG 135 (135)
|+|+ +++|
T Consensus 173 I~g~-~~vg 180 (340)
T cd05284 173 VIGV-GGLG 180 (340)
T ss_pred EEcC-cHHH
Confidence 9995 4464
No 47
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=99.75 E-value=2e-17 Score=126.30 Aligned_cols=126 Identities=14% Similarity=0.115 Sum_probs=96.2
Q ss_pred eeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC-C--CCCC-CcccceEEEEE--ecCCCCCCCCCEEEEc----CCeee
Q 048381 6 ATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK-H--EDNG-PIEGFGVARVV--DLGHPEFKKGDLVWGT----TGWEE 75 (135)
Q Consensus 6 ~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~-~--~~~~-~~~g~~~g~vv--~~~~~~~~~Gd~V~~~----g~~~~ 75 (135)
+++|.| .|+++||+||+.++|+|+.+...... . ..++ ..+.+++|.|+ +++++.+++||+|++. ++|++
T Consensus 19 ~~~~~~-~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~g~~~~ 97 (327)
T PRK10754 19 VEFTPA-DPAENEVQVENKAIGINYIDTYIRSGLYPPPSLPSGLGTEAAGVVSKVGSGVKHIKVGDRVVYAQSALGAYSS 97 (327)
T ss_pred eeccCC-CCCCCEEEEEEEEEEcCHHHhhhcCCCCCCCCCCCccCcceEEEEEEeCCCCCCCCCCCEEEECCCCCcceee
Confidence 344433 37899999999999999865432211 1 1112 23446778775 4677889999999864 78999
Q ss_pred EEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 76 YSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 76 ~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
|+.++.+. ++++|++ ++.++++ .+.++++|||+++.+.+++++|++|+|+|++|.+|
T Consensus 98 ~v~v~~~~-~~~lp~~-~~~~~~~-~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig 154 (327)
T PRK10754 98 VHNVPADK-AAILPDA-ISFEQAA-ASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVG 154 (327)
T ss_pred EEEcCHHH-ceeCCCC-CCHHHHH-HHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHH
Confidence 99999998 9999984 7776554 47788999999998888999999999999888765
No 48
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=99.75 E-value=2e-17 Score=126.77 Aligned_cols=124 Identities=19% Similarity=0.250 Sum_probs=94.2
Q ss_pred eeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC-CCC-CCC-cccceEEEEEe--cCCCCCCCCCEEEE-----------
Q 048381 6 ATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK-HED-NGP-IEGFGVARVVD--LGHPEFKKGDLVWG----------- 69 (135)
Q Consensus 6 ~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~-~~~-~~~-~~g~~~g~vv~--~~~~~~~~Gd~V~~----------- 69 (135)
+++|.| +|+++||+||++++++|+.+...... .+. .+. .+.+++|+|+. +++++|++||+|++
T Consensus 16 ~~~~~p-~~~~~evlv~v~~~~i~~~d~~~~~g~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~ 94 (338)
T PRK09422 16 VEKTLR-PLKHGEALVKMEYCGVCHTDLHVANGDFGDKTGRILGHEGIGIVKEVGPGVTSLKVGDRVSIAWFFEGCGHCE 94 (338)
T ss_pred EEecCC-CCCCCeEEEEEEEEeechhHHHHHcCCCCCCCCccCCcccceEEEEECCCCccCCCCCEEEEccCCCCCCCCh
Confidence 344444 37999999999999999864322211 111 122 34477888764 67788999999986
Q ss_pred --------------------cCCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEec
Q 048381 70 --------------------TTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSA 129 (135)
Q Consensus 70 --------------------~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~g 129 (135)
.|+|+||+.++.+. ++++|++ ++..+++ .++++++|||+++ +.+++++|++|||+|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~-~~~~p~~-~~~~~aa-~l~~~~~ta~~~~-~~~~~~~g~~vlV~g 170 (338)
T PRK09422 95 YCTTGRETLCRSVKNAGYTVDGGMAEQCIVTADY-AVKVPEG-LDPAQAS-SITCAGVTTYKAI-KVSGIKPGQWIAIYG 170 (338)
T ss_pred hhcCCCcccCCCccccCccccCcceeEEEEchHH-eEeCCCC-CCHHHee-hhhcchhHHHHHH-HhcCCCCCCEEEEEC
Confidence 37899999999997 9999985 7776654 5888999999998 678899999999999
Q ss_pred CCCCCC
Q 048381 130 ASGAVG 135 (135)
Q Consensus 130 a~g~vG 135 (135)
+|++|
T Consensus 171 -~g~vG 175 (338)
T PRK09422 171 -AGGLG 175 (338)
T ss_pred -CcHHH
Confidence 57664
No 49
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=99.75 E-value=2.1e-17 Score=127.75 Aligned_cols=126 Identities=23% Similarity=0.247 Sum_probs=93.4
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhc-CC-------------CCCCC-cccceEEEEEe--cCCCCCCCCC
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMT-KH-------------EDNGP-IEGFGVARVVD--LGHPEFKKGD 65 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~-~~-------------~~~~~-~~g~~~g~vv~--~~~~~~~~Gd 65 (135)
++.+++|.| +|+++||+||+.++++|+.+..... .. ..++. .+.+++|+|+. +++++|++||
T Consensus 12 l~~~~~~~p-~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd 90 (351)
T cd08233 12 IRVEEVPEP-PVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEVGSGVTGFKVGD 90 (351)
T ss_pred eEEEeccCC-CCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEEEeCCCCCCCCCCC
Confidence 344555554 3799999999999999985432111 10 01122 34478898864 6788899999
Q ss_pred EEEE-------------------------------cCCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHH
Q 048381 66 LVWG-------------------------------TTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFY 114 (135)
Q Consensus 66 ~V~~-------------------------------~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~ 114 (135)
+|++ .|+|+||+.++.+. ++++|++ ++.++++ +..+..|||+++
T Consensus 91 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~-~~~lP~~-~~~~~aa--~~~~~~ta~~~l- 165 (351)
T cd08233 91 RVVVEPTIKCGTCGACKRGLYNLCDSLGFIGLGGGGGGFAEYVVVPAYH-VHKLPDN-VPLEEAA--LVEPLAVAWHAV- 165 (351)
T ss_pred EEEECCCCCCCCChHHhCcCcccCCCCceeccCCCCCceeeEEEechHH-eEECcCC-CCHHHhh--hccHHHHHHHHH-
Confidence 9985 37899999999998 9999985 7776543 336788999999
Q ss_pred hhcCCCCCCEEEEecCCCCCC
Q 048381 115 EIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 115 ~~~~~~~g~~VlV~ga~g~vG 135 (135)
+.+++++|++|+|+|+ |++|
T Consensus 166 ~~~~~~~g~~vlI~g~-g~vG 185 (351)
T cd08233 166 RRSGFKPGDTALVLGA-GPIG 185 (351)
T ss_pred HhcCCCCCCEEEEECC-CHHH
Confidence 6788999999999985 6664
No 50
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=99.75 E-value=1.8e-17 Score=130.06 Aligned_cols=129 Identities=16% Similarity=0.174 Sum_probs=97.5
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCC-------------CCCC-CcccceEEEEEe--cCCCCCCCCCE
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKH-------------EDNG-PIEGFGVARVVD--LGHPEFKKGDL 66 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~-------------~~~~-~~~g~~~g~vv~--~~~~~~~~Gd~ 66 (135)
++.+++|.|. ++++||+||+.++|+|..+....... .... ..+.+++|+|+. ++++.|++||+
T Consensus 30 ~~~~~~~~p~-l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~ 108 (393)
T cd08246 30 IQLEDVPVPE-LGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSDASGIVWAVGEGVKNWKVGDE 108 (393)
T ss_pred eEEeecCCCC-CCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccceEEEEEEeCCCCCcCCCCCE
Confidence 4455566553 79999999999999997532211111 0011 224478888864 67888999999
Q ss_pred EEEc-------------------------------CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHh
Q 048381 67 VWGT-------------------------------TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYE 115 (135)
Q Consensus 67 V~~~-------------------------------g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~ 115 (135)
|++. |+|++|+.++... ++++|++ +++++++ .+.++++|||+++..
T Consensus 109 V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~g~~a~y~~v~~~~-l~~iP~~-l~~~~aa-~l~~~~~tA~~al~~ 185 (393)
T cd08246 109 VVVHCSVWDGNDPERAGGDPMFDPSQRIWGYETNYGSFAQFALVQATQ-LMPKPKH-LSWEEAA-AYMLVGATAYRMLFG 185 (393)
T ss_pred EEEeccccccCcccccccccccccccccccccCCCCcceeEEEechHH-eEECCCC-CCHHHHh-hhcccHHHHHHHHhh
Confidence 9864 7899999999998 9999984 7776654 588899999999976
Q ss_pred h--cCCCCCCEEEEecCCCCCC
Q 048381 116 I--RAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 116 ~--~~~~~g~~VlV~ga~g~vG 135 (135)
. +++++|++|+|+|++|++|
T Consensus 186 ~~~~~~~~g~~vlV~ga~g~iG 207 (393)
T cd08246 186 WNPNTVKPGDNVLIWGASGGLG 207 (393)
T ss_pred cccccCCCCCEEEEECCCcHHH
Confidence 5 7899999999999988765
No 51
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=99.75 E-value=4.7e-18 Score=130.07 Aligned_cols=125 Identities=22% Similarity=0.231 Sum_probs=97.3
Q ss_pred eeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCC-CC-CCCc-ccceEEEE--EecCCCCCCCCCEEEEc----------
Q 048381 6 ATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKH-ED-NGPI-EGFGVARV--VDLGHPEFKKGDLVWGT---------- 70 (135)
Q Consensus 6 ~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~-~~-~~~~-~g~~~g~v--v~~~~~~~~~Gd~V~~~---------- 70 (135)
+++.++ +|++||||||+.|+|+++.|...+... +. ++.+ +.++.|+| ++++|+++++||+|+..
T Consensus 18 ~ei~l~-~P~~gEVlVri~AtGVCHTD~~~~~G~~p~~~P~vLGHEgAGiVe~VG~gVt~vkpGDhVI~~f~p~CG~C~~ 96 (366)
T COG1062 18 EEVDLD-PPRAGEVLVRITATGVCHTDAHTLSGDDPEGFPAVLGHEGAGIVEAVGEGVTSVKPGDHVILLFTPECGQCKF 96 (366)
T ss_pred EEEecC-CCCCCeEEEEEEEeeccccchhhhcCCCCCCCceecccccccEEEEecCCccccCCCCEEEEcccCCCCCCch
Confidence 334433 589999999999999998654333211 11 2333 44677766 56899999999999841
Q ss_pred -----------------------------------------CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHH
Q 048381 71 -----------------------------------------TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIA 109 (135)
Q Consensus 71 -----------------------------------------g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA 109 (135)
++|+||.++++.+ ++|++++ .+++.+ +.++|..+|.
T Consensus 97 C~sGk~nlC~~~~~~~~kG~m~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s-~vki~~~-~p~~~a-~llGCgV~TG 173 (366)
T COG1062 97 CLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEIS-LVKIDPD-APLEKA-CLLGCGVTTG 173 (366)
T ss_pred hhCCCcccccchhhhcccccccCCceeeecCCcceeeeeccccchhheeecccc-eEECCCC-CCccce-EEEeeeeccC
Confidence 2588999999998 9999984 788764 4799999999
Q ss_pred HHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 110 WAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 110 ~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
+.+..+.+++++|++|.|.|- |++|
T Consensus 174 ~Gav~nta~v~~G~tvaV~Gl-GgVG 198 (366)
T COG1062 174 IGAVVNTAKVEPGDTVAVFGL-GGVG 198 (366)
T ss_pred hHHhhhcccCCCCCeEEEEec-cHhH
Confidence 999999999999999999986 6665
No 52
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=99.75 E-value=1.4e-17 Score=129.13 Aligned_cols=125 Identities=19% Similarity=0.158 Sum_probs=86.2
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCC----CC--CCCc-ccceEEEEEe--cCCCCCCCCCEEEEc---
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKH----ED--NGPI-EGFGVARVVD--LGHPEFKKGDLVWGT--- 70 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~----~~--~~~~-~g~~~g~vv~--~~~~~~~~Gd~V~~~--- 70 (135)
++.+++|.|. |++||||||++++|||+.+...+... +. ++.. +.+.+|+|++ ++ ++|++||||+..
T Consensus 13 l~~~~~p~p~-~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~~~vGdrV~~~~~~ 90 (355)
T cd08230 13 VRVVDIPEPE-PTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SGLSPGDLVVPTVRR 90 (355)
T ss_pred CeEEeCCCCC-CCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CCCCCCCEEEecccc
Confidence 3445566553 79999999999999999765443221 11 1223 4478899875 56 789999999752
Q ss_pred ------------------------------CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHh-----
Q 048381 71 ------------------------------TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYE----- 115 (135)
Q Consensus 71 ------------------------------g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~----- 115 (135)
|+|+||++++++. ++++|++ ++ +. +++..+..+++.++..
T Consensus 91 ~cg~C~~c~~g~~~~c~~~~~~~~g~~~~~G~~aey~~~~~~~-~~~~P~~-~~-~~--a~~~~p~~~~~~a~~~~~~~~ 165 (355)
T cd08230 91 PPGKCLNCRIGRPDFCETGEYTERGIKGLHGFMREYFVDDPEY-LVKVPPS-LA-DV--GVLLEPLSVVEKAIEQAEAVQ 165 (355)
T ss_pred CCCcChhhhCcCcccCCCcceeccCcCCCCccceeEEEecccc-EEECCCC-CC-cc--eeecchHHHHHHHHHHHhhhh
Confidence 6699999999998 9999985 66 32 2344455444443322
Q ss_pred -hcCCCCCCEEEEecCCCCCC
Q 048381 116 -IRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 116 -~~~~~~g~~VlV~ga~g~vG 135 (135)
...+++|++|+|.|+ |++|
T Consensus 166 ~~~~~~~g~~vlI~G~-G~vG 185 (355)
T cd08230 166 KRLPTWNPRRALVLGA-GPIG 185 (355)
T ss_pred hhcccCCCCEEEEECC-CHHH
Confidence 223678999999986 7765
No 53
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=99.75 E-value=3.1e-17 Score=127.83 Aligned_cols=125 Identities=20% Similarity=0.238 Sum_probs=95.2
Q ss_pred eeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC-CC-CCC-CcccceEEEEEe--cCCCCCCCCCEEEE-----------
Q 048381 6 ATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK-HE-DNG-PIEGFGVARVVD--LGHPEFKKGDLVWG----------- 69 (135)
Q Consensus 6 ~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~-~~-~~~-~~~g~~~g~vv~--~~~~~~~~Gd~V~~----------- 69 (135)
+++|.| +++++||+||+.++|+|+.+...... .+ .++ ..+.+++|+|+. +++++|++||+|++
T Consensus 18 ~~~~~p-~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~~~~p~v~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~ 96 (365)
T cd08278 18 EDVELD-DPRPDEVLVRIVATGICHTDLVVRDGGLPTPLPAVLGHEGAGVVEAVGSAVTGLKPGDHVVLSFASCGECANC 96 (365)
T ss_pred EEeecC-CCCCCeEEEEEEEeecCcccHHHhcCCCCCCCCcccccceeEEEEEeCCCcccCCCCCEEEEcccCCCCChHH
Confidence 344433 37899999999999999854332211 11 112 334578888864 67788999999983
Q ss_pred -----------------------------------------cCCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHH
Q 048381 70 -----------------------------------------TTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMI 108 (135)
Q Consensus 70 -----------------------------------------~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~T 108 (135)
.|+|++|+.++++. ++++|++ ++.+.++ .++++++|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~-~~~iP~~-~s~~~a~-~l~~~~~t 173 (365)
T cd08278 97 LSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERN-VVKVDKD-VPLELLA-PLGCGIQT 173 (365)
T ss_pred hCCCcccccCcccccccccccCCcccccccCCcccccccccccceeeEEEecchh-EEECCCC-CCHHHhh-hhcchhhh
Confidence 26899999999998 9999985 7776554 58889999
Q ss_pred HHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 109 AWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 109 A~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
||.++.+.+.+++|++|||+|+ |++|
T Consensus 174 a~~~~~~~~~~~~g~~vlI~g~-g~vG 199 (365)
T cd08278 174 GAGAVLNVLKPRPGSSIAVFGA-GAVG 199 (365)
T ss_pred hhHHHhhhcCCCCCCEEEEECC-CHHH
Confidence 9999988889999999999964 7654
No 54
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=99.75 E-value=3.2e-17 Score=125.96 Aligned_cols=128 Identities=19% Similarity=0.098 Sum_probs=95.4
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC-CC-CC-CCcccceEEEEE--ecCCCCCCCCCEEEEc-------
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK-HE-DN-GPIEGFGVARVV--DLGHPEFKKGDLVWGT------- 70 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~-~~-~~-~~~~g~~~g~vv--~~~~~~~~~Gd~V~~~------- 70 (135)
++.+++|.|.+++++||+||+.++++|+.+...... .. .+ ...+.+++|.|+ +++++++++||+|++.
T Consensus 12 ~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~ 91 (344)
T cd08284 12 VRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIPSTPGFVLGHEFVGEVVEVGPEVRTLKVGDRVVSPFTIACGE 91 (344)
T ss_pred ceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCCCCCCcccccceEEEEEeeCCCccccCCCCEEEEcccCCCCC
Confidence 455666666534699999999999999854322211 11 11 233457888875 4678889999999972
Q ss_pred ---------------------------CCeeeEEEecCC--CceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCC
Q 048381 71 ---------------------------TGWEEYSVIKNP--EGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKK 121 (135)
Q Consensus 71 ---------------------------g~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~ 121 (135)
|+|++|+.++.+ . ++++|++ +++++++ +++++++|||+++.. .++++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~-~~~~p~~-l~~~~a~-~l~~~~~ta~~~~~~-~~~~~ 167 (344)
T cd08284 92 CFYCRRGQSGRCAKGGLFGYAGSPNLDGAQAEYVRVPFADGT-LLKLPDG-LSDEAAL-LLGDILPTGYFGAKR-AQVRP 167 (344)
T ss_pred ChHHhCcCcccCCCCccccccccCCCCCceeEEEEcccccCc-eEECCCC-CCHHHhh-hhcCchHHHHhhhHh-cCCcc
Confidence 789999999864 6 9999984 7777654 588899999999965 78999
Q ss_pred CCEEEEecCCCCCC
Q 048381 122 GEYVFVSAASGAVG 135 (135)
Q Consensus 122 g~~VlV~ga~g~vG 135 (135)
|++|||+| +|++|
T Consensus 168 ~~~vlI~g-~g~vg 180 (344)
T cd08284 168 GDTVAVIG-CGPVG 180 (344)
T ss_pred CCEEEEEC-CcHHH
Confidence 99999996 57664
No 55
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.75 E-value=2.1e-17 Score=126.90 Aligned_cols=123 Identities=20% Similarity=0.203 Sum_probs=91.4
Q ss_pred eeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC--------------CCCCCC-cccceEEEEEe--cCCCC-CCCCCEE
Q 048381 6 ATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK--------------HEDNGP-IEGFGVARVVD--LGHPE-FKKGDLV 67 (135)
Q Consensus 6 ~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~--------------~~~~~~-~~g~~~g~vv~--~~~~~-~~~Gd~V 67 (135)
+++|.| +|+++||+||+.++++|+.+...... ...++. .+.+++|+|+. +++++ |++||+|
T Consensus 14 ~~~~~p-~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~~Gd~V 92 (341)
T cd08262 14 RDVPDP-EPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDYGPGTERKLKVGTRV 92 (341)
T ss_pred EecCCC-CCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEEEeCCCCcCCCCCCCEE
Confidence 445544 37899999999999999854322211 111122 34477888764 66776 9999999
Q ss_pred EEc--------------------CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEE
Q 048381 68 WGT--------------------TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFV 127 (135)
Q Consensus 68 ~~~--------------------g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV 127 (135)
++. |+|+||+.++.+. ++++|++ ++.+++ ++.++++|||+++ +.+++++|++|||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~-~~~lP~~-~s~~~a--~~~~~~~~a~~~~-~~~~~~~g~~VlI 167 (341)
T cd08262 93 TSLPLLLCGQGASCGIGLSPEAPGGYAEYMLLSEAL-LLRVPDG-LSMEDA--ALTEPLAVGLHAV-RRARLTPGEVALV 167 (341)
T ss_pred EecCCcCCCCChhhhCCCCcCCCCceeeeEEechHH-eEECCCC-CCHHHh--hhhhhHHHHHHHH-HhcCCCCCCEEEE
Confidence 974 7899999999998 9999985 676643 3667889999995 7789999999999
Q ss_pred ecCCCCCC
Q 048381 128 SAASGAVG 135 (135)
Q Consensus 128 ~ga~g~vG 135 (135)
+|+ |++|
T Consensus 168 ~g~-g~vg 174 (341)
T cd08262 168 IGC-GPIG 174 (341)
T ss_pred ECC-CHHH
Confidence 964 7654
No 56
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.74 E-value=5.9e-17 Score=123.65 Aligned_cols=125 Identities=26% Similarity=0.286 Sum_probs=95.7
Q ss_pred eeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC-C---CCCC-CcccceEEEEE--ecCCCCCCCCCEEEEc--CCeee
Q 048381 5 SATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK-H---EDNG-PIEGFGVARVV--DLGHPEFKKGDLVWGT--TGWEE 75 (135)
Q Consensus 5 ~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~-~---~~~~-~~~g~~~g~vv--~~~~~~~~~Gd~V~~~--g~~~~ 75 (135)
.++++.|. |.++||+||+.++|+|+.+...... . ..++ ..+.+++|.|+ ++++++|++||+|++. |+|++
T Consensus 20 ~~~~~~~~-~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~g~~~s 98 (329)
T cd08250 20 IVDVPVPL-PGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVTDFKVGDAVATMSFGAFAE 98 (329)
T ss_pred EEecCCCC-CCCCEEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCCCCCCCCEEEEecCcceeE
Confidence 34455443 6899999999999999865432211 1 1112 23447788875 4667789999999985 89999
Q ss_pred EEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 76 YSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 76 ~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
|+.++.+. ++++|++ ..++ +++.++++|||+++.+..++++|++|+|+|++|++|
T Consensus 99 ~~~v~~~~-~~~ip~~---~~~~-a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig 153 (329)
T cd08250 99 YQVVPARH-AVPVPEL---KPEV-LPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTG 153 (329)
T ss_pred EEEechHH-eEECCCC---cchh-hhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHH
Confidence 99999998 9999974 2333 358889999999999888999999999999988875
No 57
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=99.74 E-value=2.2e-17 Score=126.36 Aligned_cols=126 Identities=17% Similarity=0.086 Sum_probs=91.0
Q ss_pred eeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCC-C---CCCC-cccceEEEEEe--cCCCC-CCCCCEEEEc----C
Q 048381 4 TSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKH-E---DNGP-IEGFGVARVVD--LGHPE-FKKGDLVWGT----T 71 (135)
Q Consensus 4 ~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~-~---~~~~-~~g~~~g~vv~--~~~~~-~~~Gd~V~~~----g 71 (135)
+.+++|.|. |++|||+||++++|+|+.+....... + .++. ++.+++|+|+. +++++ |++||+|++. |
T Consensus 19 ~~~~~~~p~-~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~~vGd~V~~~~~~~g 97 (324)
T cd08291 19 SLPEPEVPE-PGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGPLAQSLIGKRVAFLAGSYG 97 (324)
T ss_pred EecccCCCC-CCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCccccCCCCCEEEecCCCCC
Confidence 334455443 78999999999999999754433221 1 1123 34478898865 66775 9999999986 8
Q ss_pred CeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEe-cCCCCCC
Q 048381 72 GWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVS-AASGAVG 135 (135)
Q Consensus 72 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~-ga~g~vG 135 (135)
+|+||+.++++. ++++|++ +++++++ ++.+.++|||..+ +..++ +++.++|+ +++|++|
T Consensus 98 ~~a~~~~v~~~~-~~~iP~~-~~~~~aa-~~~~~~~ta~~~~-~~~~~-~~~~vlv~~~g~g~vG 157 (324)
T cd08291 98 TYAEYAVADAQQ-CLPLPDG-VSFEQGA-SSFVNPLTALGML-ETARE-EGAKAVVHTAAASALG 157 (324)
T ss_pred cchheeeecHHH-eEECCCC-CCHHHHh-hhcccHHHHHHHH-Hhhcc-CCCcEEEEccCccHHH
Confidence 899999999998 9999984 7776654 4778899997544 55555 56666666 7888775
No 58
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=99.74 E-value=6.2e-17 Score=127.12 Aligned_cols=128 Identities=21% Similarity=0.104 Sum_probs=95.4
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC-C--CCCCCc-ccceEEEEEe--cCCCCCCCCCEEEE-------
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK-H--EDNGPI-EGFGVARVVD--LGHPEFKKGDLVWG------- 69 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~-~--~~~~~~-~g~~~g~vv~--~~~~~~~~Gd~V~~------- 69 (135)
++.+++|.|.+++++||+||+.++++|+.+...... . ..++.. +.+++|+|+. +++++|++||+|++
T Consensus 12 ~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~g 91 (386)
T cd08283 12 VRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGMKKGDILGHEFMGVVEEVGPEVRNLKVGDRVVVPFTIACG 91 (386)
T ss_pred ceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEcCcCCCC
Confidence 345556655433699999999999999864332211 1 111223 4478888864 67888999999976
Q ss_pred -------------------------------------------cCCeeeEEEecCC--CceEEcCCCCCChhhhhhccCh
Q 048381 70 -------------------------------------------TTGWEEYSVIKNP--EGLFKIHQTELPLSYYSGILGM 104 (135)
Q Consensus 70 -------------------------------------------~g~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~l~~ 104 (135)
.|+|+||++++.+ . ++++|++ ++.++++ ++++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~-~~~lp~~-~~~~~aa-~l~~ 168 (386)
T cd08283 92 ECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGYSHLTGGYAGGQAEYVRVPFADVG-PFKIPDD-LSDEKAL-FLSD 168 (386)
T ss_pred CChhhcCCCcccCCCcccccccccccccccccccccccccCCCCCeeEEEEEcccccCe-EEECCCC-CCHHHHh-hhcc
Confidence 2678999999987 7 9999984 7776654 5788
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 105 PGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 105 ~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
+++|||+++ +.+++++|++|||+| +|++|
T Consensus 169 ~~~ta~~~l-~~~~~~~g~~VlV~g-~G~vG 197 (386)
T cd08283 169 ILPTGYHAA-ELAEVKPGDTVAVWG-CGPVG 197 (386)
T ss_pred chhhhHHHH-hhccCCCCCEEEEEC-CCHHH
Confidence 999999999 778999999999996 46654
No 59
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=99.74 E-value=9.2e-17 Score=122.22 Aligned_cols=129 Identities=20% Similarity=0.190 Sum_probs=94.8
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCC----CCCCCc-ccceEEEEEecCCCCCCCCCEEEEc-------
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKH----EDNGPI-EGFGVARVVDLGHPEFKKGDLVWGT------- 70 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~----~~~~~~-~g~~~g~vv~~~~~~~~~Gd~V~~~------- 70 (135)
++.+++|.|. |+++||+||+.++++|+.+....... +.++.. +.+++|+|+.+++++|++||+|+++
T Consensus 15 ~~~~~~~~p~-~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~~~~~~~~~Gd~V~~~~~~~~~~ 93 (324)
T cd08288 15 AELRELDESD-LPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVESSSPRFKPGDRVVLTGWGVGER 93 (324)
T ss_pred eEEEECCCCC-CCCCeEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEeCCCCCCCCCCEEEECCccCCCC
Confidence 4455666553 79999999999999998543222111 111223 4478898887777889999999983
Q ss_pred --CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhh--cCCC-CCCEEEEecCCCCCC
Q 048381 71 --TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEI--RAPK-KGEYVFVSAASGAVG 135 (135)
Q Consensus 71 --g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~--~~~~-~g~~VlV~ga~g~vG 135 (135)
|+|++|+.++.+. ++++|++ +++++++ .++++++|||.++... ...+ +|++|+|+|++|++|
T Consensus 94 ~~g~~~~~~~v~~~~-~~~lp~~-~~~~~~~-~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~vg 160 (324)
T cd08288 94 HWGGYAQRARVKADW-LVPLPEG-LSARQAM-AIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVG 160 (324)
T ss_pred CCCcceeEEEEchHH-eeeCCCC-CCHHHHh-hhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcHHH
Confidence 7899999999998 9999984 7776654 5788899998776521 3344 678999999988765
No 60
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=99.74 E-value=3.2e-17 Score=126.99 Aligned_cols=125 Identities=20% Similarity=0.201 Sum_probs=93.0
Q ss_pred eeeeecccCCCCCCcEEEEEEEEeeCHHHHhhh-cCC---CCCC-CcccceEEEEEe--cCCCCCCCCCEEEE-------
Q 048381 4 TSATVSLKVAEGSNTVPVKNLYLSCDPYSRILM-TKH---EDNG-PIEGFGVARVVD--LGHPEFKKGDLVWG------- 69 (135)
Q Consensus 4 ~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~-~~~---~~~~-~~~g~~~g~vv~--~~~~~~~~Gd~V~~------- 69 (135)
+.+++|.|. |+++||+||+.++|+|+.+.... ... ..++ ..+.+++|+|+. ++++.+ +||+|+.
T Consensus 12 ~~~~~p~P~-~~~~evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~GdrV~~~~~~~cg 89 (349)
T TIGR03201 12 VKTRVEIPE-LGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IGKAVIVPAVIPCG 89 (349)
T ss_pred eEEeccCCC-CCCCeEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CCCEEEECCCCCCC
Confidence 344555543 79999999999999998643221 111 1112 234578898865 567777 9999985
Q ss_pred -----------------------cCCeeeEEEecCCCceEEcCC------CCCChhhhhhccChHHHHHHHHHHhhcCCC
Q 048381 70 -----------------------TTGWEEYSVIKNPEGLFKIHQ------TELPLSYYSGILGMPGMIAWAGFYEIRAPK 120 (135)
Q Consensus 70 -----------------------~g~~~~~~~~~~~~~~~~~p~------~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~ 120 (135)
.|+|+||+.++.+. ++++|+ + ++++.+ +.+.+++.|||+++.. .+++
T Consensus 90 ~c~~c~~g~~~~c~~~~~~g~~~~G~~ae~~~v~~~~-~~~ip~~~~~~~~-~~~~~~-a~~~~~~~ta~~a~~~-~~~~ 165 (349)
T TIGR03201 90 ECELCKTGRGTICRAQKMPGNDMQGGFASHIVVPAKG-LCVVDEARLAAAG-LPLEHV-SVVADAVTTPYQAAVQ-AGLK 165 (349)
T ss_pred CChhhhCcCcccCCCCCccCcCCCCcccceEEechHH-eEECCcccccccC-CCHHHh-hhhcchHHHHHHHHHh-cCCC
Confidence 27899999999998 999997 3 556544 3577889999999864 7899
Q ss_pred CCCEEEEecCCCCCC
Q 048381 121 KGEYVFVSAASGAVG 135 (135)
Q Consensus 121 ~g~~VlV~ga~g~vG 135 (135)
+|++|+|+|+ |++|
T Consensus 166 ~g~~VlV~G~-G~vG 179 (349)
T TIGR03201 166 KGDLVIVIGA-GGVG 179 (349)
T ss_pred CCCEEEEECC-CHHH
Confidence 9999999998 8765
No 61
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.74 E-value=6.1e-17 Score=122.24 Aligned_cols=120 Identities=26% Similarity=0.258 Sum_probs=94.7
Q ss_pred CCCCCcEEEEEEEEeeCHHHHhhhcCCC------CCC-CcccceEEEEE--ecCCCCCCCCCEEEEc------CCeeeEE
Q 048381 13 AEGSNTVPVKNLYLSCDPYSRILMTKHE------DNG-PIEGFGVARVV--DLGHPEFKKGDLVWGT------TGWEEYS 77 (135)
Q Consensus 13 ~p~~~eVlVkv~a~~ln~~~~~~~~~~~------~~~-~~~g~~~g~vv--~~~~~~~~~Gd~V~~~------g~~~~~~ 77 (135)
+|+++||+|++.++++|+.+........ .++ .++.+++|.|. +++++++++||+|++. ++|++|+
T Consensus 23 ~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~g~~~~~~ 102 (319)
T cd08267 23 TPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPPKGGGALAEYV 102 (319)
T ss_pred CCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCCCEEEEeccCCCCceeeEEE
Confidence 3799999999999999986543322110 112 23446788875 4677889999999974 6899999
Q ss_pred EecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 78 VIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 78 ~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
.++.+. +.++|++ ++.+.++ .+.+++++||+++.+..++++|++|+|+|++|++|
T Consensus 103 ~~~~~~-~~~ip~~-~~~~~~~-~~~~~~~~a~~~~~~~~~~~~g~~vli~g~~g~~g 157 (319)
T cd08267 103 VAPESG-LAKKPEG-VSFEEAA-ALPVAGLTALQALRDAGKVKPGQRVLINGASGGVG 157 (319)
T ss_pred Eechhh-eEECCCC-CCHHHHH-hhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHH
Confidence 999997 9999984 7776544 58889999999999888899999999999987764
No 62
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=99.73 E-value=6.4e-17 Score=126.07 Aligned_cols=128 Identities=20% Similarity=0.199 Sum_probs=96.7
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhh-cCCCC-CC-CcccceEEEEEe--cCCCCCCCCCEEEEc-------
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILM-TKHED-NG-PIEGFGVARVVD--LGHPEFKKGDLVWGT------- 70 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~-~~~~~-~~-~~~g~~~g~vv~--~~~~~~~~Gd~V~~~------- 70 (135)
++.+++|.|. |+++||+||+.++++|+.+.... +.... ++ ..+.+++|+|+. ++++++++||+|++.
T Consensus 13 ~~~~~~~~p~-~~~~~vlv~v~~~~i~~~d~~~~~g~~~~~~~~i~g~e~~G~V~~vG~~v~~~~~Gd~Vv~~~~~~~~~ 91 (365)
T cd05279 13 LSIEEIEVAP-PKAGEVRIKVVATGVCHTDLHVIDGKLPTPLPVILGHEGAGIVESIGPGVTTLKPGDKVIPLFGPQCGK 91 (365)
T ss_pred cEEEEeecCC-CCCCeEEEEEEEeeecchhHHHhcCCCCCCCCcccccceeEEEEEeCCCcccCCCCCEEEEcCCCCCCC
Confidence 3445555543 78999999999999998543222 11111 12 234478888854 778889999999853
Q ss_pred --------------------------------------------CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHH
Q 048381 71 --------------------------------------------TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPG 106 (135)
Q Consensus 71 --------------------------------------------g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~ 106 (135)
++|++|+.++.+. ++++|++ +++++++ .+.+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~-~~~lP~~-~~~~~a~-~~~~~~ 168 (365)
T cd05279 92 CKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEIS-LAKIDPD-APLEKVC-LIGCGF 168 (365)
T ss_pred ChhhcCCCcccCCCcccccccccccCCcceeeccCCccccccccccccceEEecCCc-eEECCCC-CCHHHhh-Hhccch
Confidence 5799999999998 9999985 7776654 577889
Q ss_pred HHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 107 MIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 107 ~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
+|||+++.+.+++++|++|||+| +|++|
T Consensus 169 ~ta~~al~~~~~~~~g~~vlI~g-~g~vG 196 (365)
T cd05279 169 STGYGAAVNTAKVTPGSTCAVFG-LGGVG 196 (365)
T ss_pred hHHHHHHHhccCCCCCCEEEEEC-CCHHH
Confidence 99999998889999999999996 47654
No 63
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=99.73 E-value=7.2e-17 Score=125.53 Aligned_cols=127 Identities=22% Similarity=0.223 Sum_probs=96.9
Q ss_pred eeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC-CC-CCC-CcccceEEEEEe--cCCCCCCCCCEEEE---------
Q 048381 4 TSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK-HE-DNG-PIEGFGVARVVD--LGHPEFKKGDLVWG--------- 69 (135)
Q Consensus 4 ~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~-~~-~~~-~~~g~~~g~vv~--~~~~~~~~Gd~V~~--------- 69 (135)
+.+++|.|. ++++||+||+.++++|+.+...... .+ .++ ..+.+++|+|+. +++++|++||+|++
T Consensus 14 ~~~~~~~p~-~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~ 92 (363)
T cd08279 14 EIEEVELDD-PGPGEVLVRIAAAGLCHSDLHVVTGDLPAPLPAVLGHEGAGVVEEVGPGVTGVKPGDHVVLSWIPACGTC 92 (363)
T ss_pred eEEEeeCCC-CCCCeEEEEEEEeecCcHHHHHhcCCCCCCCCccccccceEEEEEeCCCccccCCCCEEEECCCCCCCCC
Confidence 345555443 7899999999999999864433221 11 112 234478888864 67788999999987
Q ss_pred -----------------------------------------cCCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHH
Q 048381 70 -----------------------------------------TTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMI 108 (135)
Q Consensus 70 -----------------------------------------~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~T 108 (135)
.|+|++|+.++.+. ++++|++ +++++++ .++++++|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~lp~~-~~~~~aa-~~~~~~~t 169 (363)
T cd08279 93 RYCSRGQPNLCDLGAGILGGQLPDGTRRFTADGEPVGAMCGLGTFAEYTVVPEAS-VVKIDDD-IPLDRAA-LLGCGVTT 169 (363)
T ss_pred hhhcCCCcccCcccccccccccCCCcccccccCccccccccCccceeeEEecccc-EEECCCC-CChHHee-hhcchhHH
Confidence 26899999999998 9999984 7776654 58889999
Q ss_pred HHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 109 AWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 109 A~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
||.++.+..++++|++|||+| +|++|
T Consensus 170 a~~~~~~~~~~~~g~~vLI~g-~g~vG 195 (363)
T cd08279 170 GVGAVVNTARVRPGDTVAVIG-CGGVG 195 (363)
T ss_pred HHHHHHhccCCCCCCEEEEEC-CCHHH
Confidence 999998889999999999995 47654
No 64
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=99.73 E-value=3.9e-17 Score=123.96 Aligned_cols=129 Identities=23% Similarity=0.310 Sum_probs=98.9
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCC-C---CCC-CcccceEEEEE--ecCCCCCCCCCEEEEc---CC
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKH-E---DNG-PIEGFGVARVV--DLGHPEFKKGDLVWGT---TG 72 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~-~---~~~-~~~g~~~g~vv--~~~~~~~~~Gd~V~~~---g~ 72 (135)
++.++.|.| +++++||+||+.++++|+.+...+... . .++ .++.+++|.|+ +++++++++||+|++. |+
T Consensus 14 ~~~~~~~~~-~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~g~ 92 (323)
T cd05282 14 LELVSLPIP-PPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLGGEGT 92 (323)
T ss_pred EEeEeCCCC-CCCCCeEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeCCCCc
Confidence 344455544 378999999999999999654333211 1 111 23457788775 4678889999999985 78
Q ss_pred eeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 73 WEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 73 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
|++|+.++.+. ++++|++ ++..+++ .+++.++|||+++.+.+++++|++|||+|++|++|
T Consensus 93 ~~~~~~~~~~~-~~~lp~~-~~~~~~a-~~~~~~~ta~~~~~~~~~~~~~~~vlI~g~~~~vg 152 (323)
T cd05282 93 WQEYVVAPADD-LIPVPDS-ISDEQAA-MLYINPLTAWLMLTEYLKLPPGDWVIQNAANSAVG 152 (323)
T ss_pred ceeEEecCHHH-eEECCCC-CCHHHHH-HHhccHHHHHHHHHHhccCCCCCEEEEcccccHHH
Confidence 99999999997 9999985 6766544 47788999999999888899999999999988764
No 65
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.73 E-value=5.6e-17 Score=124.70 Aligned_cols=129 Identities=26% Similarity=0.345 Sum_probs=97.3
Q ss_pred eeeeeecccCCC-CCCcEEEEEEEEeeCHHHHhhhcCC------------------CCCCCc-ccceEEEEEe--cCCCC
Q 048381 3 LTSATVSLKVAE-GSNTVPVKNLYLSCDPYSRILMTKH------------------EDNGPI-EGFGVARVVD--LGHPE 60 (135)
Q Consensus 3 ~~~~~~~~~~~p-~~~eVlVkv~a~~ln~~~~~~~~~~------------------~~~~~~-~g~~~g~vv~--~~~~~ 60 (135)
++.++++.|. | +++||+||+.++++|+.+....... ...+.. +.+++|+|+. +++++
T Consensus 16 ~~~~~~~~p~-~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e~~G~v~~vG~~v~~ 94 (350)
T cd08248 16 LLLENARIPV-IRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRDCSGVVVDIGSGVKS 94 (350)
T ss_pred eeecccCCCC-CCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecceeEEEEEecCCCccc
Confidence 3444555443 6 5999999999999998654322111 111223 3467888864 66788
Q ss_pred CCCCCEEEEc------CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCC----CCEEEEecC
Q 048381 61 FKKGDLVWGT------TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKK----GEYVFVSAA 130 (135)
Q Consensus 61 ~~~Gd~V~~~------g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~----g~~VlV~ga 130 (135)
|++||+|++. |+|++|+.++.+. ++++|++ ++.+.++ .+.++++|||+++.+.+++++ |++|+|+|+
T Consensus 95 ~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~-~~~lp~~-~~~~~aa-~~~~~~~ta~~~l~~~~~~~~~~~~g~~vlI~g~ 171 (350)
T cd08248 95 FEIGDEVWGAVPPWSQGTHAEYVVVPENE-VSKKPKN-LSHEEAA-SLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGG 171 (350)
T ss_pred CCCCCEEEEecCCCCCccceeEEEecHHH-eecCCCC-CCHHHHh-hchhHHHHHHHHHHHhccCCCccCCCCEEEEECC
Confidence 9999999983 7899999999998 9999984 7776544 588899999999988887764 999999999
Q ss_pred CCCCC
Q 048381 131 SGAVG 135 (135)
Q Consensus 131 ~g~vG 135 (135)
+|++|
T Consensus 172 ~g~ig 176 (350)
T cd08248 172 SGGVG 176 (350)
T ss_pred CChHH
Confidence 88765
No 66
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=99.73 E-value=2.6e-17 Score=126.85 Aligned_cols=129 Identities=22% Similarity=0.211 Sum_probs=97.6
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhh-cCC-CCCC-CcccceEEEEE--ecCCCCCCCCCEEEEc-------
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILM-TKH-EDNG-PIEGFGVARVV--DLGHPEFKKGDLVWGT------- 70 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~-~~~-~~~~-~~~g~~~g~vv--~~~~~~~~~Gd~V~~~------- 70 (135)
++.+++|.|. |+++||+||+.++++|+.+...+ ... ..++ .++.+++|.|+ ++++++|++||+|+++
T Consensus 14 ~~~~~~~~p~-~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~ 92 (339)
T cd08249 14 LVVVDVPVPK-PGPDEVLVKVKAVALNPVDWKHQDYGFIPSYPAILGCDFAGTVVEVGSGVTRFKVGDRVAGFVHGGNPN 92 (339)
T ss_pred ccccCCCCCC-CCCCEEEEEEEEEEcCchheeeeecccccCCCceeeeeeeEEEEEeCCCcCcCCCCCEEEEEeccccCC
Confidence 3445555543 79999999999999998643322 111 1112 23446778775 4677889999999985
Q ss_pred ----CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCC----------CCCCEEEEecCCCCCC
Q 048381 71 ----TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAP----------KKGEYVFVSAASGAVG 135 (135)
Q Consensus 71 ----g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~----------~~g~~VlV~ga~g~vG 135 (135)
|+|++|+.++.+. ++++|++ +++..++ .++++++|||+++.+..++ +++++|||+|++|++|
T Consensus 93 ~~~~g~~~~~~~v~~~~-~~~ip~~-~~~~~~~-~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg 168 (339)
T cd08249 93 DPRNGAFQEYVVADADL-TAKIPDN-ISFEEAA-TLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVG 168 (339)
T ss_pred CCCCCcccceEEechhh-eEECCCC-CCHHHce-ecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHH
Confidence 7899999999998 9999984 6776554 5888999999999877655 7899999999988765
No 67
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=99.73 E-value=7.8e-17 Score=124.46 Aligned_cols=126 Identities=19% Similarity=0.171 Sum_probs=90.0
Q ss_pred eeeeecccCCCCCCcEEEEEEEEeeCHHHHhhh-cCC-CCCCCc-ccceEEEEEe--cCCCCCCCCCEEEE---------
Q 048381 4 TSATVSLKVAEGSNTVPVKNLYLSCDPYSRILM-TKH-EDNGPI-EGFGVARVVD--LGHPEFKKGDLVWG--------- 69 (135)
Q Consensus 4 ~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~-~~~-~~~~~~-~g~~~g~vv~--~~~~~~~~Gd~V~~--------- 69 (135)
+.+++|.|.+++++||+||+.++|+|+.+...+ ... ..++.. +.+.+|+|+. +++++|++||+|++
T Consensus 13 ~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~vGd~V~~~~~~~c~~c 92 (347)
T PRK10309 13 RVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNGAHYYPITLGHEFSGYVEAVGSGVDDLHPGDAVACVPLLPCFTC 92 (347)
T ss_pred EEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCCCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEECCCcCCCCC
Confidence 344455444346899999999999998654221 111 112333 4478898865 67889999999986
Q ss_pred ---------------------cCCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEe
Q 048381 70 ---------------------TTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVS 128 (135)
Q Consensus 70 ---------------------~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ 128 (135)
.|+|+||+.++.+. ++++|++ +++++++. + .+..++|+++ +...+++|++|||+
T Consensus 93 ~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~-~~~lP~~-~s~~~aa~-~-~~~~~~~~~~-~~~~~~~g~~vlV~ 167 (347)
T PRK10309 93 PECLRGFYSLCAKYDFIGSRRDGGNAEYIVVKRKN-LFALPTD-MPIEDGAF-I-EPITVGLHAF-HLAQGCEGKNVIII 167 (347)
T ss_pred cchhCcCcccCCCcceeccCCCCccceeEEeehHH-eEECcCC-CCHHHhhh-h-hHHHHHHHHH-HhcCCCCCCEEEEE
Confidence 27899999999998 9999984 77765432 3 2455677775 56788999999999
Q ss_pred cCCCCCC
Q 048381 129 AASGAVG 135 (135)
Q Consensus 129 ga~g~vG 135 (135)
|+ |++|
T Consensus 168 G~-g~vG 173 (347)
T PRK10309 168 GA-GTIG 173 (347)
T ss_pred CC-CHHH
Confidence 75 7665
No 68
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=99.73 E-value=4.5e-17 Score=125.13 Aligned_cols=126 Identities=25% Similarity=0.154 Sum_probs=94.4
Q ss_pred eeeeecccCCC-CCCcEEEEEEEEeeCHHHHhhhc-CCC--CCCC-cccceEEEEE--ecCCCCCCCCCEEEE-------
Q 048381 4 TSATVSLKVAE-GSNTVPVKNLYLSCDPYSRILMT-KHE--DNGP-IEGFGVARVV--DLGHPEFKKGDLVWG------- 69 (135)
Q Consensus 4 ~~~~~~~~~~p-~~~eVlVkv~a~~ln~~~~~~~~-~~~--~~~~-~~g~~~g~vv--~~~~~~~~~Gd~V~~------- 69 (135)
+.+++|.|. | .++||+||+.++++|+.+..... ..+ ..+. .+.+++|+|+ ++++++|++||+|++
T Consensus 13 ~~~~~~~p~-~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~ 91 (347)
T cd05278 13 GLEEVPDPK-IQGPHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHEFVGEVVEVGSDVKRLKPGDRVSVPCITFCG 91 (347)
T ss_pred EEEEcCCCC-CCCCCeEEEEEEEEEechhhHHHHcCCCCCCCCCceeccceEEEEEEECCCccccCCCCEEEecCCCCCC
Confidence 334455443 6 89999999999999996543221 111 1122 3447888885 467888999999986
Q ss_pred --------------------------cCCeeeEEEecCC--CceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCC
Q 048381 70 --------------------------TTGWEEYSVIKNP--EGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKK 121 (135)
Q Consensus 70 --------------------------~g~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~ 121 (135)
.|+|++|++++.+ . ++++|++ ++.++++ .++++++|||+++ +..++++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~-~~~lP~~-~~~~~aa-~l~~~~~ta~~~~-~~~~~~~ 167 (347)
T cd05278 92 RCRFCRRGYHAHCENGLWGWKLGNRIDGGQAEYVRVPYADMN-LAKIPDG-LPDEDAL-MLSDILPTGFHGA-ELAGIKP 167 (347)
T ss_pred CChhHhCcCcccCcCCCcccccccCCCCeeeEEEEecchhCe-EEECCCC-CCHHHHh-hhcchhhheeehh-hhcCCCC
Confidence 2789999999987 7 9999984 7776654 5888999999998 6788999
Q ss_pred CCEEEEecCCCCCC
Q 048381 122 GEYVFVSAASGAVG 135 (135)
Q Consensus 122 g~~VlV~ga~g~vG 135 (135)
|++|||+|+ |++|
T Consensus 168 ~~~VlI~g~-g~vg 180 (347)
T cd05278 168 GSTVAVIGA-GPVG 180 (347)
T ss_pred CCEEEEECC-CHHH
Confidence 999999764 6654
No 69
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=99.73 E-value=2.5e-17 Score=130.40 Aligned_cols=130 Identities=15% Similarity=0.057 Sum_probs=88.9
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhh-cCC-----C----CCCCc-ccceEEEEEe--cCCC-CCCCCCEEE
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILM-TKH-----E----DNGPI-EGFGVARVVD--LGHP-EFKKGDLVW 68 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~-~~~-----~----~~~~~-~g~~~g~vv~--~~~~-~~~~Gd~V~ 68 (135)
++.+++|.|. |+++||+||++++|||+.+...+ ... + .++.. +.+.+|+|++ ++++ +|++||||+
T Consensus 14 l~~~e~p~P~-~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~vGdrV~ 92 (410)
T cd08238 14 LRLEKFELPE-IADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGKKWQGKYKPGQRFV 92 (410)
T ss_pred eEEEecCCCC-CCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCCCccCCCCCCCEEE
Confidence 3445566553 79999999999999998644322 111 0 11223 4478898865 6676 599999998
Q ss_pred Ec-------------------CCeeeEEEecCC----CceEEcCCCCCChhhhhhccC--hH--HHHHHHH-----HHhh
Q 048381 69 GT-------------------TGWEEYSVIKNP----EGLFKIHQTELPLSYYSGILG--MP--GMIAWAG-----FYEI 116 (135)
Q Consensus 69 ~~-------------------g~~~~~~~~~~~----~~~~~~p~~~~~~~~~~~~l~--~~--~~TA~~~-----l~~~ 116 (135)
.. |+|+||++++++ . ++++|++ +++++++..-+ +. +++|++. +.+.
T Consensus 93 ~~~~~~c~~~~~c~~~g~~~~G~~aey~~v~~~~~~~~-~~~lP~~-l~~~~aal~epl~~~~~~~~a~~~~~~~~~~~~ 170 (410)
T cd08238 93 IQPALILPDGPSCPGYSYTYPGGLATYHIIPNEVMEQD-CLLIYEG-DGYAEASLVEPLSCVIGAYTANYHLQPGEYRHR 170 (410)
T ss_pred EcCCcCCCCCCCCCCccccCCCcceEEEEecHHhccCC-eEECCCC-CCHHHHhhcchHHHHHHHhhhcccccccchhhh
Confidence 62 789999999986 5 8999985 77765431102 21 3344433 2356
Q ss_pred cCCCCCCEEEEecCCCCCC
Q 048381 117 RAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 117 ~~~~~g~~VlV~ga~g~vG 135 (135)
+++++|++|+|+|++|++|
T Consensus 171 ~~~~~g~~VlV~G~~G~vG 189 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMG 189 (410)
T ss_pred cCCCCCCEEEEEeCCCHHH
Confidence 7899999999999988876
No 70
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.73 E-value=5.7e-17 Score=124.66 Aligned_cols=118 Identities=20% Similarity=0.143 Sum_probs=92.9
Q ss_pred CCCCcEEEEEEEEeeCHHHHhhhcCC-----------------------CCCC-CcccceEEEEE--ecCCCCCCCCCEE
Q 048381 14 EGSNTVPVKNLYLSCDPYSRILMTKH-----------------------EDNG-PIEGFGVARVV--DLGHPEFKKGDLV 67 (135)
Q Consensus 14 p~~~eVlVkv~a~~ln~~~~~~~~~~-----------------------~~~~-~~~g~~~g~vv--~~~~~~~~~Gd~V 67 (135)
|.++||+||+.++++|+.+...+... ..++ .++.+++|+|+ ++++++|++||+|
T Consensus 26 ~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V 105 (350)
T cd08274 26 PAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRIQGADIVGRVVAVGEGVDTARIGERV 105 (350)
T ss_pred CCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcccCCcceEEEEEeCCCCCCCCCCCEE
Confidence 68999999999999999654322110 0112 23457788875 4678889999999
Q ss_pred EEc----------------------CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEE
Q 048381 68 WGT----------------------TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYV 125 (135)
Q Consensus 68 ~~~----------------------g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~V 125 (135)
++. |+|++|+.++.+. ++++|++ ++..+++ ++.++++|||+++ +..++++|++|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~-~~~ip~~-~~~~~~a-~l~~~~~ta~~~~-~~~~~~~g~~v 181 (350)
T cd08274 106 LVDPSIRDPPEDDPADIDYIGSERDGGFAEYTVVPAEN-AYPVNSP-LSDVELA-TFPCSYSTAENML-ERAGVGAGETV 181 (350)
T ss_pred EEecCcCCCCccccccccccCCCCCccceEEEEecHHH-ceeCCCC-CCHHHHH-hcccHHHHHHHHH-hhcCCCCCCEE
Confidence 872 7899999999998 9999985 7776544 5888999999998 67889999999
Q ss_pred EEecCCCCCC
Q 048381 126 FVSAASGAVG 135 (135)
Q Consensus 126 lV~ga~g~vG 135 (135)
||+|++|++|
T Consensus 182 lI~g~~g~ig 191 (350)
T cd08274 182 LVTGASGGVG 191 (350)
T ss_pred EEEcCCcHHH
Confidence 9999988765
No 71
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=99.73 E-value=1.4e-16 Score=124.52 Aligned_cols=129 Identities=19% Similarity=0.152 Sum_probs=95.5
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC-CC-CCC-CcccceEEEEEe--cCCCCCCCCCEEEE--------
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK-HE-DNG-PIEGFGVARVVD--LGHPEFKKGDLVWG-------- 69 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~-~~-~~~-~~~g~~~g~vv~--~~~~~~~~Gd~V~~-------- 69 (135)
++.+++|+|.+|+++||+||++++++|+.+...... .. .++ ..+.+++|+|+. ++++.|++||+|++
T Consensus 12 ~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~g~ 91 (375)
T cd08282 12 VAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTGAEPGLVLGHEAMGEVEEVGSAVESLKVGDRVVVPFNVACGR 91 (375)
T ss_pred eeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCCCCCceeccccEEEEEEeCCCCCcCCCCCEEEEeCCCCCCC
Confidence 556667766545899999999999999965433221 11 112 234478888864 66788999999986
Q ss_pred --------------------------------cCCeeeEEEecCC--CceEEcCCCCCChhh--hhhccChHHHHHHHHH
Q 048381 70 --------------------------------TTGWEEYSVIKNP--EGLFKIHQTELPLSY--YSGILGMPGMIAWAGF 113 (135)
Q Consensus 70 --------------------------------~g~~~~~~~~~~~--~~~~~~p~~~~~~~~--~~~~l~~~~~TA~~~l 113 (135)
.|+|+||+.++.. . ++++|++ ++.++ ..+.+..+.+|||+++
T Consensus 92 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~-~~~lP~~-~~~~~~~~~a~~~~~~~ta~~a~ 169 (375)
T cd08282 92 CRNCKRGLTGVCLTVNPGRAGGAYGYVDMGPYGGGQAEYLRVPYADFN-LLKLPDR-DGAKEKDDYLMLSDIFPTGWHGL 169 (375)
T ss_pred CHHHHCcCcccCCCCCcccccccccccccCCCCCeeeeEEEeecccCc-EEECCCC-CChhhhhheeeecchHHHHHHHH
Confidence 1679999999975 7 9999985 77764 2335777899999999
Q ss_pred HhhcCCCCCCEEEEecCCCCCC
Q 048381 114 YEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 114 ~~~~~~~~g~~VlV~ga~g~vG 135 (135)
+.+++++|++|+|.|+ |++|
T Consensus 170 -~~~~~~~g~~vlI~g~-g~vg 189 (375)
T cd08282 170 -ELAGVQPGDTVAVFGA-GPVG 189 (375)
T ss_pred -HhcCCCCCCEEEEECC-CHHH
Confidence 7789999999999764 6654
No 72
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=99.73 E-value=1e-16 Score=122.30 Aligned_cols=125 Identities=22% Similarity=0.216 Sum_probs=95.7
Q ss_pred eeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCCC--CCC-CcccceEEEEE--ecCCCCCCCCCEEEEc----------
Q 048381 6 ATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKHE--DNG-PIEGFGVARVV--DLGHPEFKKGDLVWGT---------- 70 (135)
Q Consensus 6 ~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~~--~~~-~~~g~~~g~vv--~~~~~~~~~Gd~V~~~---------- 70 (135)
++++.+ +++++||+||+.++++|+.+........ .++ ..+.+++|+|+ ++++++|++||+|+..
T Consensus 17 ~~~~~~-~~~~~ev~v~v~~~~i~~~d~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~ 95 (325)
T cd08264 17 EDVKDP-KPGPGEVLIRVKMAGVNPVDYNVINAVKVKPMPHIPGAEFAGVVEEVGDHVKGVKKGDRVVVYNRVFDGTCDM 95 (325)
T ss_pred EeccCC-CCCCCeEEEEEEEEEechHHHHHHhCCCCCCCCeecccceeEEEEEECCCCCCCCCCCEEEECCCcCCCCChh
Confidence 344443 4799999999999999986433222111 112 23447788775 4677889999999853
Q ss_pred --------------------CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecC
Q 048381 71 --------------------TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAA 130 (135)
Q Consensus 71 --------------------g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga 130 (135)
++|++|+.++.+. ++++|++ +++++++ .++++++|||+++.. .++++|++|+|+|+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~-~~~~p~~-~~~~~~~-~~~~~~~~a~~~l~~-~~~~~g~~vlI~g~ 171 (325)
T cd08264 96 CLSGNEMLCRNGGIIGVVSNGGYAEYIVVPEKN-LFKIPDS-ISDELAA-SLPVAALTAYHALKT-AGLGPGETVVVFGA 171 (325)
T ss_pred hcCCCccccCccceeeccCCCceeeEEEcCHHH-ceeCCCC-CCHHHhh-hhhhhhHHHHHHHHh-cCCCCCCEEEEECC
Confidence 7899999999997 9999984 7776654 578889999999965 88999999999999
Q ss_pred CCCCC
Q 048381 131 SGAVG 135 (135)
Q Consensus 131 ~g~vG 135 (135)
+|++|
T Consensus 172 ~g~vg 176 (325)
T cd08264 172 SGNTG 176 (325)
T ss_pred CchHH
Confidence 88765
No 73
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=99.73 E-value=1.3e-16 Score=122.01 Aligned_cols=127 Identities=23% Similarity=0.206 Sum_probs=96.5
Q ss_pred eeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC-CC--CCCC-cccceEEEEEe--cCCCCCCCCCEEEEc-------
Q 048381 4 TSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK-HE--DNGP-IEGFGVARVVD--LGHPEFKKGDLVWGT------- 70 (135)
Q Consensus 4 ~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~-~~--~~~~-~~g~~~g~vv~--~~~~~~~~Gd~V~~~------- 70 (135)
+.+++|.|. +++||++||+.++++|+.+...... .+ .++. .+.+++|+|+. ++++.+++||+|++.
T Consensus 14 ~~~~~~~~~-~~~~~v~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~~~~~~~ 92 (334)
T PRK13771 14 RIEEVPDPK-PGKDEVVIKVNYAGLCYRDLLQLQGFYPRMKYPVILGHEVVGTVEEVGENVKGFKPGDRVASLLYAPDGT 92 (334)
T ss_pred EEEeCCCCC-CCCCeEEEEEEEEeechhhHHHhcCCCCCCCCCeeccccceEEEEEeCCCCccCCCCCEEEECCCCCCcC
Confidence 334455443 7899999999999999864432211 11 1122 34477888754 566789999999974
Q ss_pred -----------------------CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEE
Q 048381 71 -----------------------TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFV 127 (135)
Q Consensus 71 -----------------------g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV 127 (135)
|+|++|+.++.+. ++++|++ ++...++ .+.+++.|||+++.+. +++++++|+|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~lp~~-~~~~~~a-~l~~~~~~a~~~~~~~-~~~~~~~vlI 168 (334)
T PRK13771 93 CEYCRSGEEAYCKNRLGYGEELDGFFAEYAKVKVTS-LVKVPPN-VSDEGAV-IVPCVTGMVYRGLRRA-GVKKGETVLV 168 (334)
T ss_pred ChhhcCCCcccCccccccccccCceeeeeeecchhc-eEECCCC-CCHHHhh-cccchHHHHHHHHHhc-CCCCCCEEEE
Confidence 6799999999998 9999984 7776554 5888999999999876 8999999999
Q ss_pred ecCCCCCC
Q 048381 128 SAASGAVG 135 (135)
Q Consensus 128 ~ga~g~vG 135 (135)
+|++|++|
T Consensus 169 ~g~~g~~g 176 (334)
T PRK13771 169 TGAGGGVG 176 (334)
T ss_pred ECCCccHH
Confidence 99988775
No 74
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.72 E-value=1.5e-16 Score=122.25 Aligned_cols=128 Identities=20% Similarity=0.170 Sum_probs=97.4
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC-CC---CCC-CcccceEEEEEe--cCCCCCCCCCEEEE------
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK-HE---DNG-PIEGFGVARVVD--LGHPEFKKGDLVWG------ 69 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~-~~---~~~-~~~g~~~g~vv~--~~~~~~~~Gd~V~~------ 69 (135)
++.+++|.|. |.++||+||+.+.++|+.+...... .. ..+ ..+.+++|+|+. ++++.|++||+|+.
T Consensus 14 ~~~~~~~~~~-~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~~~~~~ 92 (341)
T cd08297 14 YEVKDVPVPE-PGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLKVGDRVGVKWLYDA 92 (341)
T ss_pred ceEEEeeCCC-CCCCeEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCCCCCCEEEEecCCCC
Confidence 4555666554 7899999999999999964332211 11 112 234467788764 67788999999985
Q ss_pred -------------------------cCCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCE
Q 048381 70 -------------------------TTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEY 124 (135)
Q Consensus 70 -------------------------~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~ 124 (135)
.|+|++|+.++.+. ++++|++ ++..+++ .+.+.++|||+++... +++++++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~-~~~lp~~-~~~~~~a-~l~~~~~ta~~~~~~~-~~~~~~~ 168 (341)
T cd08297 93 CGKCEYCRTGDETLCPNQKNSGYTVDGTFAEYAIADARY-VTPIPDG-LSFEQAA-PLLCAGVTVYKALKKA-GLKPGDW 168 (341)
T ss_pred CCCCccccCCCcccCCCccccccccCCcceeEEEecccc-EEECCCC-CCHHHHH-HHHcchHHHHHHHHhc-CCCCCCE
Confidence 37899999999998 9999984 7776654 4788999999999774 8999999
Q ss_pred EEEecCCCCCC
Q 048381 125 VFVSAASGAVG 135 (135)
Q Consensus 125 VlV~ga~g~vG 135 (135)
|||+|+++++|
T Consensus 169 vlV~g~~~~vg 179 (341)
T cd08297 169 VVISGAGGGLG 179 (341)
T ss_pred EEEECCCchHH
Confidence 99999988765
No 75
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=99.72 E-value=1.6e-16 Score=122.37 Aligned_cols=128 Identities=20% Similarity=0.136 Sum_probs=95.1
Q ss_pred eeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCC-C--CCCC-cccceEEEEEe--cCCCCCCCCCEEEEc-------
Q 048381 4 TSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKH-E--DNGP-IEGFGVARVVD--LGHPEFKKGDLVWGT------- 70 (135)
Q Consensus 4 ~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~-~--~~~~-~~g~~~g~vv~--~~~~~~~~Gd~V~~~------- 70 (135)
+.+++|.|.|+.++||+||++++++|+.+...+... + .++. .+.+++|+|+. ++++++++||+|++.
T Consensus 13 ~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~ 92 (345)
T cd08286 13 SWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTVTPGRILGHEGVGVVEEVGSAVTNFKVGDRVLISCISSCGT 92 (345)
T ss_pred eEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCCCCCCceecccceEEEEEeccCccccCCCCEEEECCcCCCCC
Confidence 334455444348999999999999998654333221 1 1122 34478888864 677889999999863
Q ss_pred ------------------------CCeeeEEEecCC--CceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCE
Q 048381 71 ------------------------TGWEEYSVIKNP--EGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEY 124 (135)
Q Consensus 71 ------------------------g~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~ 124 (135)
|+|++|+.++.+ . ++++|++ ++...++ .+.++++|||.++.+..++++|++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~-~~~lp~~-~~~~~aa-~l~~~~~ta~~~~~~~~~~~~g~~ 169 (345)
T cd08286 93 CGYCRKGLYSHCESGGWILGNLIDGTQAEYVRIPHADNS-LYKLPEG-VDEEAAV-MLSDILPTGYECGVLNGKVKPGDT 169 (345)
T ss_pred ChHHHCcCcccCCCcccccccccCCeeeeEEEcccccCc-eEECCCC-CCHHHhh-hccchhHHHHHHHHhhcCCCCCCE
Confidence 678999999987 7 9999984 6766544 588889999998888889999999
Q ss_pred EEEecCCCCCC
Q 048381 125 VFVSAASGAVG 135 (135)
Q Consensus 125 VlV~ga~g~vG 135 (135)
|||.|+ |++|
T Consensus 170 vlI~g~-g~~g 179 (345)
T cd08286 170 VAIVGA-GPVG 179 (345)
T ss_pred EEEECC-CHHH
Confidence 999875 6654
No 76
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=99.72 E-value=1.4e-16 Score=121.33 Aligned_cols=127 Identities=19% Similarity=0.188 Sum_probs=95.5
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCCC---CCCCc-ccceEEEEE--ecCCCCCCCCCEEEEc------
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKHE---DNGPI-EGFGVARVV--DLGHPEFKKGDLVWGT------ 70 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~~---~~~~~-~g~~~g~vv--~~~~~~~~~Gd~V~~~------ 70 (135)
++.+++|+|. ++++||+||+.++++|+.+...+.... ..+.. +.+++|+|+ ++++++|++||+|++.
T Consensus 14 ~~~~~~~~p~-~~~~~v~V~v~~~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~ 92 (306)
T cd08258 14 VELREVPEPE-PGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGHEFSGTIVEVGPDVEGWKVGDRVVSETTFSTC 92 (306)
T ss_pred eEEeecCCCC-CCCCeEEEEEEEEEechhhHHHHcCCCCcCCCCeeeccceEEEEEEECCCcCcCCCCCEEEEccCcCCC
Confidence 3444555543 799999999999999986443222111 11223 346788876 4678889999999873
Q ss_pred -------------------------CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEE
Q 048381 71 -------------------------TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYV 125 (135)
Q Consensus 71 -------------------------g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~V 125 (135)
|+|++|+.++.+. ++++|++ +++.++ ++..+++|||+++.+.+++++|++|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~-~~~lp~~-~~~~~a--a~~~~~~~a~~~l~~~~~~~~g~~v 168 (306)
T cd08258 93 GRCPYCRRGDYNLCPHRKGIGTQADGGFAEYVLVPEES-LHELPEN-LSLEAA--ALTEPLAVAVHAVAERSGIRPGDTV 168 (306)
T ss_pred CCCcchhCcCcccCCCCceeeecCCCceEEEEEcchHH-eEECcCC-CCHHHH--HhhchHHHHHHHHHHhcCCCCCCEE
Confidence 6899999999998 9999984 777653 3677899999999999999999999
Q ss_pred EEecCCCCCC
Q 048381 126 FVSAASGAVG 135 (135)
Q Consensus 126 lV~ga~g~vG 135 (135)
||.| +|++|
T Consensus 169 lI~g-~g~~g 177 (306)
T cd08258 169 VVFG-PGPIG 177 (306)
T ss_pred EEEC-CCHHH
Confidence 9976 56654
No 77
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=99.72 E-value=6.7e-17 Score=125.81 Aligned_cols=127 Identities=24% Similarity=0.325 Sum_probs=93.7
Q ss_pred eeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCC----C---CCC---CcccceE-EEEEec---CCCCCCCCCEEEEc
Q 048381 5 SATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKH----E---DNG---PIEGFGV-ARVVDL---GHPEFKKGDLVWGT 70 (135)
Q Consensus 5 ~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~----~---~~~---~~~g~~~-g~vv~~---~~~~~~~Gd~V~~~ 70 (135)
++++|.|. |.++|++|++.++++||.+...+... . .++ ...+.++ +.+... .+..+..||.+...
T Consensus 22 ~~~~~iP~-~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~~~~~~~~~g~~~~~~ 100 (347)
T KOG1198|consen 22 SEEVPIPE-PEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGDDVVGGWVHGDAVVAF 100 (347)
T ss_pred eecccCCC-CCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccccccccceEeeeEEeec
Confidence 44455543 79999999999999999654322111 1 122 1233333 333322 24557777777654
Q ss_pred ---CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhc------CCCCCCEEEEecCCCCCC
Q 048381 71 ---TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIR------APKKGEYVFVSAASGAVG 135 (135)
Q Consensus 71 ---g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~------~~~~g~~VlV~ga~g~vG 135 (135)
|+|+||+++++.. ++++|++ +++++++ +++++++|||.+|+... +.++|+.|||+||+||||
T Consensus 101 ~~~g~~aey~v~p~~~-~~~~P~~-l~~~~aa-~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG 171 (347)
T KOG1198|consen 101 LSSGGLAEYVVVPEKL-LVKIPES-LSFEEAA-ALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVG 171 (347)
T ss_pred cCCCceeeEEEcchhh-ccCCCCc-cChhhhh-cCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHH
Confidence 8999999999997 9999985 7887764 69999999999999999 999999999999999987
No 78
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=99.72 E-value=1.8e-16 Score=121.79 Aligned_cols=127 Identities=20% Similarity=0.192 Sum_probs=95.9
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC-CC--CCC-CcccceEEEEEe--cCCCCCCCCCEEEE-------
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK-HE--DNG-PIEGFGVARVVD--LGHPEFKKGDLVWG------- 69 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~-~~--~~~-~~~g~~~g~vv~--~~~~~~~~Gd~V~~------- 69 (135)
++.+++|.|. ++++||+||+.++++|+.+...... .+ .++ .++.+++|+|+. +++++|++||+|++
T Consensus 13 ~~~~~~~~p~-~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~ 91 (333)
T cd08296 13 LELVERDVPL-PGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHEVVGRIDAVGEGVSRWKVGDRVGVGWHGGHC 91 (333)
T ss_pred ceEEeccCCC-CCCCEEEEEEEEEecchHHHHHHhCCCCCCCCCcccCcceeEEEEEECCCCccCCCCCEEEeccccCCC
Confidence 3445566554 6899999999999999865433222 11 112 234478888764 67788999999975
Q ss_pred ------------------------cCCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEE
Q 048381 70 ------------------------TTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYV 125 (135)
Q Consensus 70 ------------------------~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~V 125 (135)
.|+|+||+.++.+. ++++|++ +++++++ .++++++|||+++... ++++|++|
T Consensus 92 ~~~~~~~~g~~~~c~~~~~~~~~~~g~~a~~~~v~~~~-~~~lp~~-~~~~~aa-~l~~~~~ta~~~~~~~-~~~~~~~v 167 (333)
T cd08296 92 GTCDACRRGDFVHCENGKVTGVTRDGGYAEYMLAPAEA-LARIPDD-LDAAEAA-PLLCAGVTTFNALRNS-GAKPGDLV 167 (333)
T ss_pred CCChhhhCcCcccCCCCCccCcccCCcceeEEEEchhh-eEeCCCC-CCHHHhh-hhhhhhHHHHHHHHhc-CCCCCCEE
Confidence 27899999999998 9999984 7776554 5888899999999765 89999999
Q ss_pred EEecCCCCCC
Q 048381 126 FVSAASGAVG 135 (135)
Q Consensus 126 lV~ga~g~vG 135 (135)
||+| +|++|
T Consensus 168 lV~g-~g~iG 176 (333)
T cd08296 168 AVQG-IGGLG 176 (333)
T ss_pred EEEC-CcHHH
Confidence 9999 67765
No 79
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=99.72 E-value=2.4e-16 Score=120.50 Aligned_cols=129 Identities=17% Similarity=0.241 Sum_probs=98.6
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC-CC--CCC-CcccceEEEEEe--cCCCCCCCCCEEEEc------
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK-HE--DNG-PIEGFGVARVVD--LGHPEFKKGDLVWGT------ 70 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~-~~--~~~-~~~g~~~g~vv~--~~~~~~~~Gd~V~~~------ 70 (135)
+..+++|.|. |.++||+||+.++++|+.+...... .+ .++ ..+.+++|+|+. ++++.|++||+|++.
T Consensus 18 ~~~~~~~~~~-~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~ 96 (336)
T cd08252 18 LIDIELPKPV-PGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQPKILGWDASGVVEAVGSEVTLFKVGDEVYYAGDITRP 96 (336)
T ss_pred eeEccCCCCC-CCCCEEEEEEEEEEcCHHHHHHHcCCCCCCCCCcccccceEEEEEEcCCCCCCCCCCCEEEEcCCCCCC
Confidence 3444555443 6899999999999999965332211 11 112 334478888864 667789999999985
Q ss_pred CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCC-----CCEEEEecCCCCCC
Q 048381 71 TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKK-----GEYVFVSAASGAVG 135 (135)
Q Consensus 71 g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~-----g~~VlV~ga~g~vG 135 (135)
++|++|+.++.+. +.++|++ ++.+.++ .+++.++|||+++.+.+.+++ |++|+|+|++|++|
T Consensus 97 g~~~~~~~v~~~~-~~~ip~~-~~~~~~~-~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg 163 (336)
T cd08252 97 GSNAEYQLVDERI-VGHKPKS-LSFAEAA-ALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVG 163 (336)
T ss_pred ccceEEEEEchHH-eeeCCCC-CCHHHhh-hhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHH
Confidence 7899999999998 9999984 6776554 588899999999988888887 99999999888765
No 80
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=99.72 E-value=1.4e-16 Score=122.37 Aligned_cols=124 Identities=17% Similarity=0.150 Sum_probs=92.4
Q ss_pred eeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCCC--CCCC-cccceEEEEEe--cCCCCCCCCCEEEEc---------
Q 048381 5 SATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKHE--DNGP-IEGFGVARVVD--LGHPEFKKGDLVWGT--------- 70 (135)
Q Consensus 5 ~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~~--~~~~-~~g~~~g~vv~--~~~~~~~~Gd~V~~~--------- 70 (135)
.++.|+| ++.++||+||+.++++|+.+........ ..+. .+.+++|+|+. +++++|++||+|++.
T Consensus 14 ~~~~~~~-~l~~~~v~v~v~~~~~n~~d~~~~~~~~~~~~~~~~g~~~~G~V~~~g~~v~~~~~Gd~V~~~~~~~~~~~~ 92 (343)
T cd08236 14 YEDIPKP-EPGPGEVLVKVKACGICGSDIPRYLGTGAYHPPLVLGHEFSGTVEEVGSGVDDLAVGDRVAVNPLLPCGKCE 92 (343)
T ss_pred EEecCCC-CCCCCeEEEEEEEEEECccchHhhcCCCCCCCCcccCcceEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCh
Confidence 3444444 3789999999999999986543322111 1122 34478888864 667889999999974
Q ss_pred ---------------------CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEec
Q 048381 71 ---------------------TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSA 129 (135)
Q Consensus 71 ---------------------g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~g 129 (135)
|+|++|+.++.+. ++++|++ ++.++++ .+ +.++|||++|. ..++++|++|||+|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~lP~~-~~~~~aa-~~-~~~~ta~~~l~-~~~~~~~~~vlI~g 167 (343)
T cd08236 93 YCKKGEYSLCSNYDYIGSRRDGAFAEYVSVPARN-LIKIPDH-VDYEEAA-MI-EPAAVALHAVR-LAGITLGDTVVVIG 167 (343)
T ss_pred hHHCcChhhCCCcceEecccCCcccceEEechHH-eEECcCC-CCHHHHH-hc-chHHHHHHHHH-hcCCCCCCEEEEEC
Confidence 7899999999998 9999984 7776653 34 67889999996 77899999999996
Q ss_pred CCCCCC
Q 048381 130 ASGAVG 135 (135)
Q Consensus 130 a~g~vG 135 (135)
+|++|
T Consensus 168 -~g~~g 172 (343)
T cd08236 168 -AGTIG 172 (343)
T ss_pred -CCHHH
Confidence 46553
No 81
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=99.71 E-value=2.3e-16 Score=119.76 Aligned_cols=118 Identities=20% Similarity=0.187 Sum_probs=92.0
Q ss_pred CCCCcEEEEEEEEeeCHHHHhhhcCC-C-----CCC-CcccceEEEEE--ecCCCCCCCCCEEEEc-----CCeeeEEEe
Q 048381 14 EGSNTVPVKNLYLSCDPYSRILMTKH-E-----DNG-PIEGFGVARVV--DLGHPEFKKGDLVWGT-----TGWEEYSVI 79 (135)
Q Consensus 14 p~~~eVlVkv~a~~ln~~~~~~~~~~-~-----~~~-~~~g~~~g~vv--~~~~~~~~~Gd~V~~~-----g~~~~~~~~ 79 (135)
+.++||+||++++++|+.+....... + ..+ .++.+++|+|+ +++++.+++||+|++. |+|++|+.+
T Consensus 25 ~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v 104 (324)
T cd08244 25 PGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDPAWLGRRVVAHTGRAGGGYAELAVA 104 (324)
T ss_pred CCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCCCCCCCEEEEccCCCCceeeEEEEE
Confidence 68999999999999999654332211 1 111 23446788775 4667889999999984 789999999
Q ss_pred cCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 80 KNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 80 ~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
+.+. ++++|++ ++.++++ +++++++||| ++.+.++++++++|+|+|++|++|
T Consensus 105 ~~~~-~~~lp~~-~~~~~a~-~~~~~~~ta~-~~~~~~~~~~~~~vlI~g~~~~~g 156 (324)
T cd08244 105 DVDS-LHPVPDG-LDLEAAV-AVVHDGRTAL-GLLDLATLTPGDVVLVTAAAGGLG 156 (324)
T ss_pred chHH-eEeCCCC-CCHHHHh-hhcchHHHHH-HHHHhcCCCCCCEEEEEcCCchHH
Confidence 9998 9999984 7777654 5888999994 666778999999999999988765
No 82
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=99.71 E-value=1.8e-16 Score=123.32 Aligned_cols=127 Identities=19% Similarity=0.220 Sum_probs=95.7
Q ss_pred eeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC-CC-CCCCc-ccceEEEEE--ecCCCC---CCCCCEEEE------
Q 048381 4 TSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK-HE-DNGPI-EGFGVARVV--DLGHPE---FKKGDLVWG------ 69 (135)
Q Consensus 4 ~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~-~~-~~~~~-~g~~~g~vv--~~~~~~---~~~Gd~V~~------ 69 (135)
+.++.|+|. ++++||+||+.++++|+.+...... .+ .++.. +.+++|+|+ ++++++ |++||+|++
T Consensus 14 ~~~~~~~~~-~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~~~~~~~~~~Gd~V~~~~~~~~ 92 (367)
T cd08263 14 TIEEIPVPR-PKEGEILIRVAACGVCHSDLHVLKGELPFPPPFVLGHEISGEVVEVGPNVENPYGLSVGDRVVGSFIMPC 92 (367)
T ss_pred EEEEeeCCC-CCCCeEEEEEEEeeeCcchHHHhcCCCCCCCCcccccccceEEEEeCCCCCCCCcCCCCCEEEEcCCCCC
Confidence 344455443 7899999999999999854332211 11 11223 346778775 466677 999999987
Q ss_pred ----------------------------------------------cCCeeeEEEecCCCceEEcCCCCCChhhhhhccC
Q 048381 70 ----------------------------------------------TTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILG 103 (135)
Q Consensus 70 ----------------------------------------------~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~ 103 (135)
.|+|++|+.++.+. ++++|++ ++..+++ .++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~P~~-is~~~aa-~l~ 169 (367)
T cd08263 93 GKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPVYMYSMGGLAEYAVVPATA-LAPLPES-LDYTESA-VLG 169 (367)
T ss_pred CCChHHhCcCcccCcCccccccccccccCCcccccccCCCccccccCCcceeEEEechhh-EEECCCC-CCHHHHh-Hhc
Confidence 26899999999998 9999985 7877654 588
Q ss_pred hHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 104 MPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 104 ~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
++++|||+++.+.+.++++++|||+| +|++|
T Consensus 170 ~~~~tA~~~l~~~~~~~~g~~VlI~g-~g~vG 200 (367)
T cd08263 170 CAGFTAYGALKHAADVRPGETVAVIG-VGGVG 200 (367)
T ss_pred chHHHHHHHHHhcccCCCCCEEEEEC-CcHHH
Confidence 99999999999888889999999995 57654
No 83
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=99.71 E-value=2.7e-16 Score=121.04 Aligned_cols=128 Identities=19% Similarity=0.129 Sum_probs=95.8
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCC-C--CCCCc-ccceEEEEE--ecCCCCCCCCCEEEE-------
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKH-E--DNGPI-EGFGVARVV--DLGHPEFKKGDLVWG------- 69 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~-~--~~~~~-~g~~~g~vv--~~~~~~~~~Gd~V~~------- 69 (135)
++.+++|.|. +.++||+||+.++++|+.+....... . .++.+ +.+++|.|+ ++++++|++||+|++
T Consensus 13 ~~~~~~~~~~-~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~~~~~~~Gd~V~~~~~~~~~ 91 (345)
T cd08260 13 LEIREVPDPE-PPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHEFAGVVVEVGEDVSRWRVGDRVTVPFVLGCG 91 (345)
T ss_pred cEEEEccCCC-CCCCeEEEEEEEeeccHHHHHHhcCCCCCCCCCeeeccceeEEEEEECCCCccCCCCCEEEECCCCCCC
Confidence 3445555543 68899999999999998643322111 1 11223 346778775 467788999999986
Q ss_pred -----------------------cCCeeeEEEecCC--CceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCE
Q 048381 70 -----------------------TTGWEEYSVIKNP--EGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEY 124 (135)
Q Consensus 70 -----------------------~g~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~ 124 (135)
.|+|++|+.++.. . ++++|++ ++..+++ .+.++++|||+++.+.++++++++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~-~~~iP~~-~~~~~aa-~l~~~~~ta~~~l~~~~~~~~~~~ 168 (345)
T cd08260 92 TCPYCRAGDSNVCEHQVQPGFTHPGSFAEYVAVPRADVN-LVRLPDD-VDFVTAA-GLGCRFATAFRALVHQARVKPGEW 168 (345)
T ss_pred CCccccCcCcccCCCCcccccCCCCcceeEEEcccccCc-eEECCCC-CCHHHhh-hhccchHHHHHHHHHccCCCCCCE
Confidence 3789999999974 6 9999985 7776554 577889999999988889999999
Q ss_pred EEEecCCCCCC
Q 048381 125 VFVSAASGAVG 135 (135)
Q Consensus 125 VlV~ga~g~vG 135 (135)
|+|+| +|++|
T Consensus 169 vlV~g-~g~vg 178 (345)
T cd08260 169 VAVHG-CGGVG 178 (345)
T ss_pred EEEEC-CCHHH
Confidence 99999 57664
No 84
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=99.71 E-value=2.2e-16 Score=121.99 Aligned_cols=127 Identities=19% Similarity=0.135 Sum_probs=92.6
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCCC------------CCC-CcccceEEEEEe--cCCC--CCCCCC
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKHE------------DNG-PIEGFGVARVVD--LGHP--EFKKGD 65 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~~------------~~~-~~~g~~~g~vv~--~~~~--~~~~Gd 65 (135)
++.+++|.|. |+++||+||+.++++|+.+...+.... .++ ..+.+++|+|+. ++++ +|++||
T Consensus 12 ~~~~~~~~p~-~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~~~Gd 90 (350)
T cd08256 12 YRLEEVPVPR-PGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGEGAEERGVKVGD 90 (350)
T ss_pred eEEEECCCCC-CCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEeCCCcccCCCCCCC
Confidence 3445555443 799999999999999986432221110 112 234578898864 5677 899999
Q ss_pred EEEE--------------------------------cCCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHH
Q 048381 66 LVWG--------------------------------TTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGF 113 (135)
Q Consensus 66 ~V~~--------------------------------~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l 113 (135)
+|++ .|+|+||+.++++..++++|++ ++++.++ .+ .+++|+|+++
T Consensus 91 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~lP~~-~~~~~aa-~~-~~~~ta~~a~ 167 (350)
T cd08256 91 RVISEQIVPCWNCRFCNRGQYWMCQKHDLYGFQNNVNGGMAEYMRFPKEAIVHKVPDD-IPPEDAI-LI-EPLACALHAV 167 (350)
T ss_pred EEEECCcCCCCCChHHhCcCcccCcCccceeeccCCCCcceeeEEcccccceEECCCC-CCHHHHh-hh-hHHHHHHHHH
Confidence 9986 2789999999988327899984 7776554 35 7899999998
Q ss_pred HhhcCCCCCCEEEEecCCCCCC
Q 048381 114 YEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 114 ~~~~~~~~g~~VlV~ga~g~vG 135 (135)
+.+++++|++|+|.| +|++|
T Consensus 168 -~~~~~~~g~~vlI~g-~g~vG 187 (350)
T cd08256 168 -DRANIKFDDVVVLAG-AGPLG 187 (350)
T ss_pred -HhcCCCCCCEEEEEC-CCHHH
Confidence 778999999999954 57664
No 85
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.70 E-value=2.3e-16 Score=120.63 Aligned_cols=125 Identities=22% Similarity=0.245 Sum_probs=93.0
Q ss_pred eeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCC-C-CCCCc-ccceEEEEE--ecCCCCCCCCCEEEE---------
Q 048381 4 TSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKH-E-DNGPI-EGFGVARVV--DLGHPEFKKGDLVWG--------- 69 (135)
Q Consensus 4 ~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~-~-~~~~~-~g~~~g~vv--~~~~~~~~~Gd~V~~--------- 69 (135)
+.++.|.| ++.++||+||++++++|+.+....... + .++.. +.+++|+|+ ++++++|++||+|++
T Consensus 13 ~~~~~~~~-~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~~~p~~~g~~~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~~ 91 (334)
T cd08234 13 EVEEVPVP-EPGPDEVLIKVAACGICGTDLHIYEGEFGAAPPLVPGHEFAGVVVAVGSKVTGFKVGDRVAVDPNIYCGEC 91 (334)
T ss_pred EEEeccCC-CCCCCeEEEEEEEEeEchhhhHHhcCCCCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEEcCCcCCCCC
Confidence 34445544 378999999999999998654333221 1 11223 347888876 467788999999986
Q ss_pred ---------------------cCCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEe
Q 048381 70 ---------------------TTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVS 128 (135)
Q Consensus 70 ---------------------~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ 128 (135)
.|+|++|+.++.+. ++++|++ ++..+++ .+ +.++|||+++ +.+++++|++|||+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~-~~~lP~~-~~~~~aa-~~-~~~~~a~~~l-~~~~~~~g~~vlI~ 166 (334)
T cd08234 92 FYCRRGRPNLCENLTAVGVTRNGGFAEYVVVPAKQ-VYKIPDN-LSFEEAA-LA-EPLSCAVHGL-DLLGIKPGDSVLVF 166 (334)
T ss_pred ccccCcChhhCCCcceeccCCCCcceeEEEecHHH-cEECcCC-CCHHHHh-hh-hHHHHHHHHH-HhcCCCCCCEEEEE
Confidence 27899999999998 9999984 7776653 34 6788999998 77899999999999
Q ss_pred cCCCCCC
Q 048381 129 AASGAVG 135 (135)
Q Consensus 129 ga~g~vG 135 (135)
|+ |++|
T Consensus 167 g~-g~vg 172 (334)
T cd08234 167 GA-GPIG 172 (334)
T ss_pred CC-CHHH
Confidence 64 6554
No 86
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=99.70 E-value=3.7e-16 Score=123.11 Aligned_cols=129 Identities=19% Similarity=0.236 Sum_probs=96.9
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHh-hhcC----------C-C-CCC--CcccceEEEEEe--cCCCCCCCCC
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRI-LMTK----------H-E-DNG--PIEGFGVARVVD--LGHPEFKKGD 65 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~-~~~~----------~-~-~~~--~~~g~~~g~vv~--~~~~~~~~Gd 65 (135)
++.+++|.|. |+++||+||+.++++|..+.. .... . + ..+ ..+.+++|+|+. +++++|++||
T Consensus 25 ~~~~~~~~p~-l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~e~~G~V~~vG~~v~~~~~Gd 103 (398)
T TIGR01751 25 IQLEVVPVPE-LGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGSDASGVVWRVGPGVTRWKVGD 103 (398)
T ss_pred eEEeecCCCC-CCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceecccceEEEEEEeCCCCCCCCCCC
Confidence 4455666554 799999999999999964211 1110 0 0 001 234478888864 6788899999
Q ss_pred EEEEc-------------------------------CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHH
Q 048381 66 LVWGT-------------------------------TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFY 114 (135)
Q Consensus 66 ~V~~~-------------------------------g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~ 114 (135)
+|++. |+|+||+.++.+. ++++|++ ++.++++ .+.++++|||.++.
T Consensus 104 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~ae~~~v~~~~-~~~vP~~-l~~~~aa-~~~~~~~ta~~al~ 180 (398)
T TIGR01751 104 EVVASCLQVDLTAPDGRVGDPMLSSEQRIWGYETNFGSFAEFALVKDYQ-LMPKPKH-LTWEEAA-CPGLTGATAYRQLV 180 (398)
T ss_pred EEEEccccccCCchhhccCccccccccccccccCCCccceEEEEechHH-eEECCCC-CCHHHHh-hccchHHHHHHHHh
Confidence 99863 7899999999998 9999984 7776654 57889999999987
Q ss_pred h--hcCCCCCCEEEEecCCCCCC
Q 048381 115 E--IRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 115 ~--~~~~~~g~~VlV~ga~g~vG 135 (135)
. .+++++|++|+|+|++|++|
T Consensus 181 ~~~~~~~~~g~~vlV~Ga~g~vG 203 (398)
T TIGR01751 181 GWNPATVKPGDNVLIWGAAGGLG 203 (398)
T ss_pred hhhccCCCCCCEEEEEcCCcHHH
Confidence 5 57889999999999988765
No 87
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=99.70 E-value=2.3e-16 Score=121.81 Aligned_cols=127 Identities=17% Similarity=0.150 Sum_probs=94.9
Q ss_pred eeeeecccCCCCCCcEEEEEEEEeeCHHHHhhh-cCCC--------------CCCCc-ccceEEEEE--ecCCCCCCCCC
Q 048381 4 TSATVSLKVAEGSNTVPVKNLYLSCDPYSRILM-TKHE--------------DNGPI-EGFGVARVV--DLGHPEFKKGD 65 (135)
Q Consensus 4 ~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~-~~~~--------------~~~~~-~g~~~g~vv--~~~~~~~~~Gd 65 (135)
+.+++|.|. ++++||+||+.++++|+.+.... ...+ .++.. +.+++|.|+ +++++++++||
T Consensus 14 ~~~~~~~p~-~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd 92 (350)
T cd08240 14 EEVEIDTPK-PPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVAVGPDAADVKVGD 92 (350)
T ss_pred eEEecCCCC-CCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEEEeeCCCCCCCCCCC
Confidence 445556543 78999999999999998543221 1110 11223 346788875 46778899999
Q ss_pred EEEEc------------------------------CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHh
Q 048381 66 LVWGT------------------------------TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYE 115 (135)
Q Consensus 66 ~V~~~------------------------------g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~ 115 (135)
+|+++ |+|++|+.++.+. ++++|++ +++.+++ .+.+.++|||+++.+
T Consensus 93 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~p~~-~s~~~aa-~l~~~~~tA~~~~~~ 169 (350)
T cd08240 93 KVLVYPWIGCGECPVCLAGDENLCAKGRALGIFQDGGYAEYVIVPHSR-YLVDPGG-LDPALAA-TLACSGLTAYSAVKK 169 (350)
T ss_pred EEEECCcCCCCCChHHHCcCcccCCCCCceeeeccCcceeeEEecHHH-eeeCCCC-CCHHHee-hhhchhhhHHHHHHh
Confidence 99863 6899999999998 9999984 7777654 578899999999988
Q ss_pred hcCCCCCCEEEEecCCCCCC
Q 048381 116 IRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 116 ~~~~~~g~~VlV~ga~g~vG 135 (135)
...++++++|||+| +|++|
T Consensus 170 ~~~~~~~~~vlI~g-~g~vg 188 (350)
T cd08240 170 LMPLVADEPVVIIG-AGGLG 188 (350)
T ss_pred cccCCCCCEEEEEC-CcHHH
Confidence 87777999999995 57654
No 88
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=99.69 E-value=3.2e-16 Score=119.61 Aligned_cols=125 Identities=21% Similarity=0.216 Sum_probs=94.3
Q ss_pred eeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCC----CCCCCc-ccceEEEEE--ecCCCCCCCCCEEEE---------
Q 048381 6 ATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKH----EDNGPI-EGFGVARVV--DLGHPEFKKGDLVWG--------- 69 (135)
Q Consensus 6 ~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~----~~~~~~-~g~~~g~vv--~~~~~~~~~Gd~V~~--------- 69 (135)
++.|.| +++++||+||+.++++|+.+....... ..++.. +.+++|+|+ ++++++|++||+|++
T Consensus 17 ~~~~~~-~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~ 95 (338)
T cd08254 17 EEVPVP-EPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFKVGDRVAVPAVIPCGAC 95 (338)
T ss_pred eccCCC-CCCCCeEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccCCCCCEEEECCCCCCCCC
Confidence 344443 278999999999999998643322111 111223 346778875 467888999999986
Q ss_pred ---------------------cCCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEe
Q 048381 70 ---------------------TTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVS 128 (135)
Q Consensus 70 ---------------------~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ 128 (135)
.|+|++|+.++.+. ++++|++ ++..+++ +++++++|||+++.+..+++++++|||.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~lp~~-~~~~~a~-~~~~~~~ta~~~l~~~~~~~~~~~vli~ 172 (338)
T cd08254 96 ALCRRGRGNLCLNQGMPGLGIDGGFAEYIVVPARA-LVPVPDG-VPFAQAA-VATDAVLTPYHAVVRAGEVKPGETVLVI 172 (338)
T ss_pred hhhhCcCcccCCCCCccccccCCcceeeEEechHH-eEECCCC-CCHHHhh-hhcchHHHHHHHHHhccCCCCCCEEEEE
Confidence 27899999999998 9999985 7776654 5888999999999988889999999998
Q ss_pred cCCCCCC
Q 048381 129 AASGAVG 135 (135)
Q Consensus 129 ga~g~vG 135 (135)
| +|++|
T Consensus 173 g-~g~vG 178 (338)
T cd08254 173 G-LGGLG 178 (338)
T ss_pred C-CcHHH
Confidence 5 46554
No 89
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=99.69 E-value=4.6e-16 Score=116.85 Aligned_cols=119 Identities=21% Similarity=0.287 Sum_probs=93.8
Q ss_pred CCCCcEEEEEEEEeeCHHHHhhhcCC-C---CCCC-cccceEEEEEe--cCCCCCCCCCEEEEc---CCeeeEEEecCCC
Q 048381 14 EGSNTVPVKNLYLSCDPYSRILMTKH-E---DNGP-IEGFGVARVVD--LGHPEFKKGDLVWGT---TGWEEYSVIKNPE 83 (135)
Q Consensus 14 p~~~eVlVkv~a~~ln~~~~~~~~~~-~---~~~~-~~g~~~g~vv~--~~~~~~~~Gd~V~~~---g~~~~~~~~~~~~ 83 (135)
+.++||+||+.++++|+.+....... . .++. ++.+++|.|+. ++++++++||+|+++ ++|++|+.++.+.
T Consensus 25 ~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~~Gd~V~~~~~~g~~~~~~~~~~~~ 104 (323)
T cd05276 25 PGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGWKVGDRVCALLAGGGYAEYVVVPAGQ 104 (323)
T ss_pred CCCCEEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCCCCCCEEEEecCCCceeEEEEcCHHH
Confidence 68899999999999998654332211 1 1122 34467787754 567789999999986 7899999999998
Q ss_pred ceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 84 GLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 84 ~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
++++|++ ++...++ .+..++.|||+++.+...++++++|+|+|++|++|
T Consensus 105 -~~~~p~~-~~~~~~~-~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig 153 (323)
T cd05276 105 -LLPVPEG-LSLVEAA-ALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVG 153 (323)
T ss_pred -hccCCCC-CCHHHHh-hchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHH
Confidence 9999984 6766544 58889999999998888999999999999988764
No 90
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=99.69 E-value=4.2e-16 Score=122.27 Aligned_cols=128 Identities=18% Similarity=0.205 Sum_probs=91.4
Q ss_pred eeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhc----C------CCCCC-CcccceEEEEE--ecCCCCCCCCCEEEE-
Q 048381 4 TSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMT----K------HEDNG-PIEGFGVARVV--DLGHPEFKKGDLVWG- 69 (135)
Q Consensus 4 ~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~----~------~~~~~-~~~g~~~g~vv--~~~~~~~~~Gd~V~~- 69 (135)
+.+++|.|. ++++||+||++++|+|+.+..... . ...++ ..+.+++|+|+ ++++++|++||+|++
T Consensus 40 ~~~~~~~p~-~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~ 118 (384)
T cd08265 40 RVEDVPVPN-LKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKNVKNFEKGDPVTAE 118 (384)
T ss_pred EEEECCCCC-CCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECCCCCCCCCCCEEEEC
Confidence 334445443 789999999999999985432221 0 01112 23447888885 467788999999985
Q ss_pred -----------------------------cCCeeeEEEecCCCceEEcCCCCCC-----hhhhhhccChHHHHHHHHHHh
Q 048381 70 -----------------------------TTGWEEYSVIKNPEGLFKIHQTELP-----LSYYSGILGMPGMIAWAGFYE 115 (135)
Q Consensus 70 -----------------------------~g~~~~~~~~~~~~~~~~~p~~~~~-----~~~~~~~l~~~~~TA~~~l~~ 115 (135)
.|+|++|+.++.+. ++++|++ ++ .....+++..+++|||++|..
T Consensus 119 ~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~g~~~~~v~v~~~~-~~~lP~~-~~~~~~~~~~~~a~~~~~~~ta~~al~~ 196 (384)
T cd08265 119 EMMWCGMCRACRSGSPNHCKNLKELGFSADGAFAEYIAVNARY-AWEINEL-REIYSEDKAFEAGALVEPTSVAYNGLFI 196 (384)
T ss_pred CCCCCCCChhhhCcCcccCCCcceeeecCCCcceeeEEechHH-eEECCcc-ccccccCCCHHHhhhhhHHHHHHHHHHh
Confidence 37899999999997 9999973 21 122233577789999999976
Q ss_pred h-cCCCCCCEEEEecCCCCCC
Q 048381 116 I-RAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 116 ~-~~~~~g~~VlV~ga~g~vG 135 (135)
. .++++|++|||+| +|++|
T Consensus 197 ~~~~~~~g~~VlV~g-~g~vG 216 (384)
T cd08265 197 RGGGFRPGAYVVVYG-AGPIG 216 (384)
T ss_pred hcCCCCCCCEEEEEC-CCHHH
Confidence 6 7899999999995 57664
No 91
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.69 E-value=6.9e-16 Score=116.77 Aligned_cols=128 Identities=19% Similarity=0.271 Sum_probs=97.8
Q ss_pred eeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC-CC--CCC-CcccceEEEEE--ecCCCCCCCCCEEEEc------C
Q 048381 4 TSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK-HE--DNG-PIEGFGVARVV--DLGHPEFKKGDLVWGT------T 71 (135)
Q Consensus 4 ~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~-~~--~~~-~~~g~~~g~vv--~~~~~~~~~Gd~V~~~------g 71 (135)
+-+++|.| ++.++||+||+.++++|+.+...... .. .++ ..+.+++|+|+ +++++++++||+|++. +
T Consensus 16 ~~~~~~~~-~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~ 94 (325)
T cd08271 16 TLEEIEIP-GPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSYPHVPGVDGAGVVVAVGAKVTGWKVGDRVAYHASLARGG 94 (325)
T ss_pred EEeccCCC-CCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCcccccceEEEEEEeCCCCCcCCCCCEEEeccCCCCCc
Confidence 33444544 37899999999999999864432211 11 111 23457788775 4667889999999975 6
Q ss_pred CeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 72 GWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 72 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
+|++|+.++.+. ++++|++ ++...++ .+.+++.|||+++.+.+++++|++|+|+|+++++|
T Consensus 95 ~~~s~~~~~~~~-~~~ip~~-~~~~~~a-~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig 155 (325)
T cd08271 95 SFAEYTVVDARA-VLPLPDS-LSFEEAA-ALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVG 155 (325)
T ss_pred cceeEEEeCHHH-eEECCCC-CCHHHHH-hhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHH
Confidence 899999999997 9999984 7776554 58889999999999989999999999999987664
No 92
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=99.69 E-value=7.3e-16 Score=116.01 Aligned_cols=127 Identities=24% Similarity=0.338 Sum_probs=97.7
Q ss_pred eeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCC----CCCC-CcccceEEEEE--ecCCCCCCCCCEEEEc-------
Q 048381 5 SATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKH----EDNG-PIEGFGVARVV--DLGHPEFKKGDLVWGT------- 70 (135)
Q Consensus 5 ~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~----~~~~-~~~g~~~g~vv--~~~~~~~~~Gd~V~~~------- 70 (135)
.+++|.|. +.++||+||+.++++|+.+....... ...+ ..+.+++|.|+ ++++++|++||+|++.
T Consensus 17 ~~~~~~~~-l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~v~~~~~~~~~~ 95 (325)
T cd08253 17 LGDLPVPT-PGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGLKVGDRVWLTNLGWGRR 95 (325)
T ss_pred eeecCCCC-CCCCEEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCCCCCCEEEEeccccCCC
Confidence 34555443 68999999999999998543322111 1112 23446778775 4678889999999974
Q ss_pred -CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 71 -TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 71 -g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
++|++|+.++.+. ++++|++ ++.++++ .+.+++.|||+++.++.++++|++|+|+|+++++|
T Consensus 96 ~g~~~~~~~~~~~~-~~~ip~~-~~~~~aa-~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g 158 (325)
T cd08253 96 QGTAAEYVVVPADQ-LVPLPDG-VSFEQGA-ALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVG 158 (325)
T ss_pred CcceeeEEEecHHH-cEeCCCC-CCHHHHh-hhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHH
Confidence 6899999999997 9999984 7776554 58889999999999888999999999999988765
No 93
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=99.69 E-value=7.4e-16 Score=117.04 Aligned_cols=125 Identities=19% Similarity=0.201 Sum_probs=95.6
Q ss_pred eecccCCCCCCcEEEEEEEEeeCHHHHhhhcCCC----CCC-CcccceEEEEEe--cCCCCCCCCCEEEEc---------
Q 048381 7 TVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKHE----DNG-PIEGFGVARVVD--LGHPEFKKGDLVWGT--------- 70 (135)
Q Consensus 7 ~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~~----~~~-~~~g~~~g~vv~--~~~~~~~~Gd~V~~~--------- 70 (135)
+.+.| ++.++||+||+.++++|..+........ .++ .++.+++|+|+. +++++|++||+|++.
T Consensus 19 ~~~~~-~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~~~ 97 (342)
T cd08266 19 DLPEP-EPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNVKPGQRVVIYPGISCGRCE 97 (342)
T ss_pred ecCCC-CCCCCeEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCCCCCCEEEEccccccccch
Confidence 44443 3789999999999999985432222111 112 344578888864 667789999999874
Q ss_pred ---------------------CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEec
Q 048381 71 ---------------------TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSA 129 (135)
Q Consensus 71 ---------------------g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~g 129 (135)
++|++|+.++.+. ++++|++ +++++++ .+++++.|||+++.+..+++++++++|+|
T Consensus 98 ~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~-~~~~p~~-~~~~~a~-~~~~~~~~a~~~l~~~~~~~~~~~vlI~g 174 (342)
T cd08266 98 YCLAGRENLCAQYGILGEHVDGGYAEYVAVPARN-LLPIPDN-LSFEEAA-AAPLTFLTAWHMLVTRARLRPGETVLVHG 174 (342)
T ss_pred hhccccccccccccccccccCcceeEEEEechHH-ceeCCCC-CCHHHHH-hhhhHHHHHHHHHHHhcCCCCCCEEEEEC
Confidence 5799999999998 9999984 6776654 57788999999998888999999999999
Q ss_pred CCCCCC
Q 048381 130 ASGAVG 135 (135)
Q Consensus 130 a~g~vG 135 (135)
+++++|
T Consensus 175 ~~~~iG 180 (342)
T cd08266 175 AGSGVG 180 (342)
T ss_pred CCchHH
Confidence 987764
No 94
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.69 E-value=7.4e-16 Score=119.09 Aligned_cols=124 Identities=20% Similarity=0.154 Sum_probs=92.1
Q ss_pred eeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC-CC--CCCC-cccceEEEEEe--cCCCCCCCCCEEEE----------
Q 048381 6 ATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK-HE--DNGP-IEGFGVARVVD--LGHPEFKKGDLVWG---------- 69 (135)
Q Consensus 6 ~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~-~~--~~~~-~~g~~~g~vv~--~~~~~~~~Gd~V~~---------- 69 (135)
+++|.| .+.++||+||++++++|+.+...+.. .. .++. .+.+++|+|+. +++++|++||+|++
T Consensus 15 ~~~~~p-~~~~~evlIkv~a~~i~~~d~~~~~g~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~ 93 (351)
T cd08285 15 IEKPIP-VCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERHGMILGHEAVGVVEEVGSEVKDFKPGDRVIVPAITPDWRSV 93 (351)
T ss_pred EECCCC-CCCCCeEEEEEEEEEechhhHHHhcCCCCCCCCCcccCcceEEEEEEecCCcCccCCCCEEEEcCcCCCCCCH
Confidence 445544 37899999999999999864332211 11 1122 34478898864 67788999999986
Q ss_pred -----------------------cCCeeeEEEecCC--CceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCE
Q 048381 70 -----------------------TTGWEEYSVIKNP--EGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEY 124 (135)
Q Consensus 70 -----------------------~g~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~ 124 (135)
.|+|+||+.++.+ . ++++|++ ++.++++ .+++.+.|||+++ +.+++++|++
T Consensus 94 ~c~~g~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~-~~~lP~~-~~~~~aa-~~~~~~~ta~~~~-~~~~~~~g~~ 169 (351)
T cd08285 94 AAQRGYPSQSGGMLGGWKFSNFKDGVFAEYFHVNDADAN-LAPLPDG-LTDEQAV-MLPDMMSTGFHGA-ELANIKLGDT 169 (351)
T ss_pred HHHCcCcccCcCCCCCccccCCCCcceeEEEEcchhhCc-eEECCCC-CCHHHhh-hhccchhhHHHHH-HccCCCCCCE
Confidence 2678999999974 6 9999984 7776554 4777899999996 6678999999
Q ss_pred EEEecCCCCCC
Q 048381 125 VFVSAASGAVG 135 (135)
Q Consensus 125 VlV~ga~g~vG 135 (135)
|||+| +|++|
T Consensus 170 vlI~g-~g~iG 179 (351)
T cd08285 170 VAVFG-IGPVG 179 (351)
T ss_pred EEEEC-CCHHH
Confidence 99996 46654
No 95
>PRK10083 putative oxidoreductase; Provisional
Probab=99.69 E-value=4.5e-16 Score=119.46 Aligned_cols=126 Identities=17% Similarity=0.185 Sum_probs=91.7
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC-CC--CCCCc-ccceEEEEEe--cCCCCCCCCCEEE--------
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK-HE--DNGPI-EGFGVARVVD--LGHPEFKKGDLVW-------- 68 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~-~~--~~~~~-~g~~~g~vv~--~~~~~~~~Gd~V~-------- 68 (135)
++.+++|.|. |+++||+||+.++++|+.+...... .+ .++.. +.+++|+|+. ++++.|++||+|+
T Consensus 12 ~~~~~~~~p~-~~~~~vlV~v~~~gi~~~d~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~ 90 (339)
T PRK10083 12 LAIEERPIPQ-PAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVDAARIGERVAVDPVISCG 90 (339)
T ss_pred eEEEeccCCC-CCCCeEEEEEEEEEEcccchHHHcCCCCcCCCCcccccceEEEEEEECCCCccCCCCCEEEEccccCCC
Confidence 3445555543 7899999999999999854322211 11 11233 4478898864 6788899999998
Q ss_pred -------------------E---cCCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEE
Q 048381 69 -------------------G---TTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVF 126 (135)
Q Consensus 69 -------------------~---~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~Vl 126 (135)
+ .|+|+||+.++.+. ++++|++ ++...+ ++..++.++|. +.+.+++++|++|+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~ip~~-~~~~~a--~~~~~~~~a~~-~~~~~~~~~g~~vl 165 (339)
T PRK10083 91 HCYPCSIGKPNVCTSLVVLGVHRDGGFSEYAVVPAKN-AHRIPDA-IADQYA--VMVEPFTIAAN-VTGRTGPTEQDVAL 165 (339)
T ss_pred CCccccCcCcccCCCCceEEEccCCcceeeEEechHH-eEECcCC-CCHHHH--hhhchHHHHHH-HHHhcCCCCCCEEE
Confidence 2 27899999999998 9999985 676553 25567778885 55678899999999
Q ss_pred EecCCCCCC
Q 048381 127 VSAASGAVG 135 (135)
Q Consensus 127 V~ga~g~vG 135 (135)
|+| +|++|
T Consensus 166 I~g-~g~vG 173 (339)
T PRK10083 166 IYG-AGPVG 173 (339)
T ss_pred EEC-CCHHH
Confidence 999 57765
No 96
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=99.68 E-value=4.7e-16 Score=119.37 Aligned_cols=125 Identities=18% Similarity=0.142 Sum_probs=91.2
Q ss_pred eeeeecccCCCCCCcEEEEEEEEeeCHHHHhhh-cC-CC----CCC-CcccceEEEEEe--cCCCCCCCCCEEEE-----
Q 048381 4 TSATVSLKVAEGSNTVPVKNLYLSCDPYSRILM-TK-HE----DNG-PIEGFGVARVVD--LGHPEFKKGDLVWG----- 69 (135)
Q Consensus 4 ~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~-~~-~~----~~~-~~~g~~~g~vv~--~~~~~~~~Gd~V~~----- 69 (135)
+.++.|+| +++++||+||+.++++|+.+.... .. .. .++ ..+.+++|+|+. +++++|++||+|++
T Consensus 10 ~~~~~~~p-~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~ 88 (339)
T cd08232 10 RVEERPAP-EPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQRVAVNPSRP 88 (339)
T ss_pred EEEEcCCC-CCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCEEEEccCCc
Confidence 34444444 378999999999999998543221 11 11 112 233478888864 67888999999986
Q ss_pred ------------------------------cCCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCC
Q 048381 70 ------------------------------TTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAP 119 (135)
Q Consensus 70 ------------------------------~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~ 119 (135)
.|+|+||+.++.+. ++++|++ +++++++ +.++++|||+++.+...+
T Consensus 89 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~-~~~iP~~-~~~~~aa--~~~~~~~a~~~l~~~~~~ 164 (339)
T cd08232 89 CGTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFREYLVVDASQ-CVPLPDG-LSLRRAA--LAEPLAVALHAVNRAGDL 164 (339)
T ss_pred CCCChHHhCcCcccCccccceeeccccCCCCCceeeEEEechHH-eEECcCC-CCHHHhh--hcchHHHHHHHHHhcCCC
Confidence 27899999999998 9999984 7776643 457888999999877767
Q ss_pred CCCCEEEEecCCCCCC
Q 048381 120 KKGEYVFVSAASGAVG 135 (135)
Q Consensus 120 ~~g~~VlV~ga~g~vG 135 (135)
+|++|||+|+ |++|
T Consensus 165 -~~~~VLI~g~-g~vG 178 (339)
T cd08232 165 -AGKRVLVTGA-GPIG 178 (339)
T ss_pred -CCCEEEEECC-CHHH
Confidence 9999999774 6654
No 97
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.68 E-value=1.1e-15 Score=116.20 Aligned_cols=120 Identities=19% Similarity=0.233 Sum_probs=94.4
Q ss_pred CCCCCcEEEEEEEEeeCHHHHhhhcCC-C---CCC-CcccceEEEEE--ecCCCCCCCCCEEEEc---CCeeeEEEecCC
Q 048381 13 AEGSNTVPVKNLYLSCDPYSRILMTKH-E---DNG-PIEGFGVARVV--DLGHPEFKKGDLVWGT---TGWEEYSVIKNP 82 (135)
Q Consensus 13 ~p~~~eVlVkv~a~~ln~~~~~~~~~~-~---~~~-~~~g~~~g~vv--~~~~~~~~~Gd~V~~~---g~~~~~~~~~~~ 82 (135)
+|.++||+||+.++++|+.+....... . ..+ ..+.+++|.|+ ++++++|++||+|+++ ++|++|+.++.+
T Consensus 23 ~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~~~~~~~~~~~~~~~ 102 (337)
T cd08275 23 EPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFKVGDRVMGLTRFGGYAEVVNVPAD 102 (337)
T ss_pred CCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCCCCCEEEEecCCCeeeeEEEecHH
Confidence 378999999999999998654332211 1 112 23346778775 4677889999999986 789999999999
Q ss_pred CceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 83 EGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 83 ~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
. ++++|++ ++...++ .+.++++|||+++.+..++++|++|+|+|++|++|
T Consensus 103 ~-~~~ip~~-~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g 152 (337)
T cd08275 103 Q-VFPLPDG-MSFEEAA-AFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVG 152 (337)
T ss_pred H-eEECCCC-CCHHHHh-hhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHH
Confidence 8 9999984 6766543 57789999999998889999999999999988765
No 98
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=99.68 E-value=8.4e-16 Score=118.00 Aligned_cols=125 Identities=19% Similarity=0.207 Sum_probs=91.4
Q ss_pred eeeeecccCCCCCCcEEEEEEEEeeCHHHHhhh-cCC--CCCC-CcccceEEEEEe--cCCCCCCCCCEEEEc-------
Q 048381 4 TSATVSLKVAEGSNTVPVKNLYLSCDPYSRILM-TKH--EDNG-PIEGFGVARVVD--LGHPEFKKGDLVWGT------- 70 (135)
Q Consensus 4 ~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~-~~~--~~~~-~~~g~~~g~vv~--~~~~~~~~Gd~V~~~------- 70 (135)
+.++.|+| ++.++||+||++++++|+.+.... ... ...+ ..+.+++|+|+. +++++|++||+|++.
T Consensus 13 ~~~~~~~~-~l~~~~v~i~v~~~~l~~~d~~~~~g~~~~~~~~~~~g~~~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~ 91 (343)
T cd08235 13 RLEEVPVP-EPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHEIAGEIVEVGDGVTGFKVGDRVFVAPHVPCGE 91 (343)
T ss_pred EEEEccCC-CCCCCeEEEEEEEeeeccccHHHHcCCCccCCCCcccccceEEEEEeeCCCCCCCCCCCEEEEccCCCCCC
Confidence 44445544 368999999999999998643322 111 1112 234478888864 667889999999974
Q ss_pred -----------------------CCeeeEEEecCCCc-----eEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCC
Q 048381 71 -----------------------TGWEEYSVIKNPEG-----LFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKG 122 (135)
Q Consensus 71 -----------------------g~~~~~~~~~~~~~-----~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g 122 (135)
|+|++|+.++.+ . ++++|++ ++..+++ .+ ++.+|||+++... ++++|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~-~~~~~~~~~lP~~-~~~~~aa-~~-~~~~~a~~~l~~~-~~~~g 166 (343)
T cd08235 92 CHYCLRGNENMCPNYKKFGNLYDGGFAEYVRVPAW-AVKRGGVLKLPDN-VSFEEAA-LV-EPLACCINAQRKA-GIKPG 166 (343)
T ss_pred ChHHHCcCcccCCCcceeccCCCCcceeeEEeccc-ccccccEEECCCC-CCHHHHH-hh-hHHHHHHHHHHhc-CCCCC
Confidence 789999999976 3 8999984 7776653 33 7889999999654 89999
Q ss_pred CEEEEecCCCCCC
Q 048381 123 EYVFVSAASGAVG 135 (135)
Q Consensus 123 ~~VlV~ga~g~vG 135 (135)
++|||+| +|++|
T Consensus 167 ~~VlV~g-~g~vg 178 (343)
T cd08235 167 DTVLVIG-AGPIG 178 (343)
T ss_pred CEEEEEC-CCHHH
Confidence 9999996 56654
No 99
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=99.68 E-value=8e-16 Score=118.40 Aligned_cols=126 Identities=21% Similarity=0.163 Sum_probs=93.6
Q ss_pred eeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC-C--CCCC-CcccceEEEEEe--cCCCCCCCCCEEEE--------
Q 048381 4 TSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK-H--EDNG-PIEGFGVARVVD--LGHPEFKKGDLVWG-------- 69 (135)
Q Consensus 4 ~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~-~--~~~~-~~~g~~~g~vv~--~~~~~~~~Gd~V~~-------- 69 (135)
+.+++|.| +|+++||+||+.++++|+.+...... . ..++ ..+.+++|+|+. +++++|++||+|+.
T Consensus 13 ~~~~~~~p-~~~~~evlirv~a~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~ 91 (337)
T cd05283 13 EPFTFERR-PLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHEIVGIVVAVGSKVTKFKVGDRVGVGCQVDSCG 91 (337)
T ss_pred eEEeccCC-CCCCCeEEEEEEEecccchHHHHhcCCcCCCCCCcccCcceeeEEEEECCCCcccCCCCEEEEecCCCCCC
Confidence 34444544 37999999999999999864332211 1 1112 234478888864 67888999999972
Q ss_pred ------------------------------cCCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCC
Q 048381 70 ------------------------------TTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAP 119 (135)
Q Consensus 70 ------------------------------~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~ 119 (135)
.|+|+||+.++.+. ++++|++ ++.+.++ .+.+.++|||+++.+. .+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~-~~~lp~~-~~~~~aa-~l~~~~~ta~~~~~~~-~~ 167 (337)
T cd05283 92 TCEQCKSGEEQYCPKGVVTYNGKYPDGTITQGGYADHIVVDERF-VFKIPEG-LDSAAAA-PLLCAGITVYSPLKRN-GV 167 (337)
T ss_pred CCccccCCchhcCcchhhcccccccCCCcCCCcceeEEEechhh-eEECCCC-CCHHHhh-hhhhHHHHHHHHHHhc-CC
Confidence 27899999999998 9999985 7776654 5888999999999765 58
Q ss_pred CCCCEEEEecCCCCCC
Q 048381 120 KKGEYVFVSAASGAVG 135 (135)
Q Consensus 120 ~~g~~VlV~ga~g~vG 135 (135)
++|++|+|.| .|++|
T Consensus 168 ~~g~~vlV~g-~g~vG 182 (337)
T cd05283 168 GPGKRVGVVG-IGGLG 182 (337)
T ss_pred CCCCEEEEEC-CcHHH
Confidence 9999999976 46654
No 100
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=99.68 E-value=8.8e-16 Score=114.87 Aligned_cols=118 Identities=14% Similarity=0.099 Sum_probs=92.4
Q ss_pred CCCCcEEEEEEEEeeCHHHHhhhcCC----CCCCCc-ccceEEEEE--ecCCCCCCCCCEEEEc-----CCeeeEEEecC
Q 048381 14 EGSNTVPVKNLYLSCDPYSRILMTKH----EDNGPI-EGFGVARVV--DLGHPEFKKGDLVWGT-----TGWEEYSVIKN 81 (135)
Q Consensus 14 p~~~eVlVkv~a~~ln~~~~~~~~~~----~~~~~~-~g~~~g~vv--~~~~~~~~~Gd~V~~~-----g~~~~~~~~~~ 81 (135)
+.++||+||+.++++|+.+...+... ..++.. +.+++|+|+ ++++++|++||+|+++ |+|++|+.++.
T Consensus 5 ~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~g~~~~~~~~~~ 84 (303)
T cd08251 5 PGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTGESMGGHATLVTVPE 84 (303)
T ss_pred CCCCEEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecCCCCcceeeEEEccH
Confidence 78999999999999998543322211 112223 346778775 4678889999999975 78999999999
Q ss_pred CCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 82 PEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 82 ~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
+. ++++|++ ++.++++ .++++++|||+++. ..++++|++|+|+++++++|
T Consensus 85 ~~-~~~~p~~-~~~~~aa-~~~~~~~ta~~~l~-~~~~~~g~~vli~~~~~~~g 134 (303)
T cd08251 85 DQ-VVRKPAS-LSFEEAC-ALPVVFLTVIDAFA-RAGLAKGEHILIQTATGGTG 134 (303)
T ss_pred HH-eEECCCC-CCHHHHH-HhHHHHHHHHHHHH-hcCCCCCCEEEEecCCcHHH
Confidence 97 9999984 7776654 58889999999984 78899999999999988764
No 101
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.68 E-value=1.1e-15 Score=115.36 Aligned_cols=126 Identities=22% Similarity=0.306 Sum_probs=96.2
Q ss_pred eeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCC-C----CCCCcccceEEEEE--ecCCCCCCCCCEEEEc--------
Q 048381 6 ATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKH-E----DNGPIEGFGVARVV--DLGHPEFKKGDLVWGT-------- 70 (135)
Q Consensus 6 ~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~-~----~~~~~~g~~~g~vv--~~~~~~~~~Gd~V~~~-------- 70 (135)
++.+.| ++.++||+||+.++++|+.+....... . .+..++.+++|.|+ ++++++|++||+|+++
T Consensus 18 ~~~~~~-~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~~ 96 (326)
T cd08272 18 REVPRP-QPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRFRVGDEVYGCAGGLGGLQ 96 (326)
T ss_pred eecCCC-CCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCCcCCCC
Confidence 344443 378999999999999998654322111 1 01224456778775 4667889999999985
Q ss_pred CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 71 TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 71 g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
|+|++|+.++.+. ++++|++ ++...++ .++++++|||+++.+..++++|++++|+|+++++|
T Consensus 97 g~~~~~~~v~~~~-~~~~p~~-~~~~~~~-~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g 158 (326)
T cd08272 97 GSLAEYAVVDARL-LALKPAN-LSMREAA-ALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVG 158 (326)
T ss_pred CceeEEEEecHHH-cccCCCC-CCHHHHH-HhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHH
Confidence 6899999999997 9999984 7776554 57788999999998889999999999999888765
No 102
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.68 E-value=1.4e-15 Score=116.13 Aligned_cols=124 Identities=19% Similarity=0.146 Sum_probs=93.5
Q ss_pred eeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC-CC--CCC-CcccceEEEEEe--cCCCCCCCCCEEEE----------
Q 048381 6 ATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK-HE--DNG-PIEGFGVARVVD--LGHPEFKKGDLVWG---------- 69 (135)
Q Consensus 6 ~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~-~~--~~~-~~~g~~~g~vv~--~~~~~~~~Gd~V~~---------- 69 (135)
++.+.| .++++||+||+.++++|+.+...... .+ .++ ..+.+++|+|+. +++++|++||+|+.
T Consensus 20 ~~~~~~-~~~~~ev~irv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~ 98 (329)
T cd08298 20 TEVPVP-EPGPGEVLIKVEACGVCRTDLHIVEGDLPPPKLPLIPGHEIVGRVEAVGPGVTRFSVGDRVGVPWLGSTCGEC 98 (329)
T ss_pred EeccCC-CCCCCEEEEEEEEEeccHHHHHHHhCCCCCCCCCccccccccEEEEEECCCCCCCcCCCEEEEeccCCCCCCC
Confidence 344443 27899999999999999864322211 11 112 234477888764 66778999999975
Q ss_pred ---------------------cCCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEe
Q 048381 70 ---------------------TTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVS 128 (135)
Q Consensus 70 ---------------------~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ 128 (135)
.|+|++|+.++.+. ++++|++ ++..+++ .+.++++|||+++ +.+++++|++|+|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~lp~~-~~~~~~~-~~~~~~~ta~~~~-~~~~~~~~~~vlV~ 174 (329)
T cd08298 99 RYCRSGRENLCDNARFTGYTVDGGYAEYMVADERF-AYPIPED-YDDEEAA-PLLCAGIIGYRAL-KLAGLKPGQRLGLY 174 (329)
T ss_pred hhHhCcChhhCCCccccccccCCceEEEEEecchh-EEECCCC-CCHHHhh-HhhhhhHHHHHHH-HhhCCCCCCEEEEE
Confidence 37899999999998 9999984 7776654 5888999999999 88999999999999
Q ss_pred cCCCCCC
Q 048381 129 AASGAVG 135 (135)
Q Consensus 129 ga~g~vG 135 (135)
| +|++|
T Consensus 175 g-~g~vg 180 (329)
T cd08298 175 G-FGASA 180 (329)
T ss_pred C-CcHHH
Confidence 6 46654
No 103
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.67 E-value=3.3e-16 Score=118.86 Aligned_cols=128 Identities=20% Similarity=0.210 Sum_probs=100.2
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCC-C--CCCC-cccceEEEEE--ecCCCCCCCCCEEEEc------
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKH-E--DNGP-IEGFGVARVV--DLGHPEFKKGDLVWGT------ 70 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~-~--~~~~-~~g~~~g~vv--~~~~~~~~~Gd~V~~~------ 70 (135)
|..|++..+ ||+.+||+||+.++++++.+...+... + .++. ++.+++|+|. +++|+++++||+|+..
T Consensus 20 L~IEei~V~-pPka~EVRIKI~~t~vCHTD~~~~~g~~~~~~fP~IlGHEaaGIVESvGegV~~vk~GD~Viplf~p~Cg 98 (375)
T KOG0022|consen 20 LVIEEIEVA-PPKAHEVRIKILATGVCHTDAYVWSGKDPEGLFPVILGHEAAGIVESVGEGVTTVKPGDHVIPLFTPQCG 98 (375)
T ss_pred eeEEEEEeC-CCCCceEEEEEEEEeeccccceeecCCCccccCceEecccceeEEEEecCCccccCCCCEEeeccccCCC
Confidence 344555443 699999999999999998654333222 1 1243 4557888885 5889999999999942
Q ss_pred ----------------------------------------------CCeeeEEEecCCCceEEcCCCCCChhhhhhccCh
Q 048381 71 ----------------------------------------------TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGM 104 (135)
Q Consensus 71 ----------------------------------------------g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~ 104 (135)
.+|+||.+++... ++|++++ .|++.. +.++|
T Consensus 99 eCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~-v~kId~~-aPl~kv-cLLgC 175 (375)
T KOG0022|consen 99 ECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDIS-VAKIDPS-APLEKV-CLLGC 175 (375)
T ss_pred CcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEEeecce-eEecCCC-CChhhe-eEeec
Confidence 2689999999998 9999984 788765 46899
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 105 PGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 105 ~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
...|.|.|..+.+++++|+++.|.|- |+||
T Consensus 176 GvsTG~GAa~~~Akv~~GstvAVfGL-G~VG 205 (375)
T KOG0022|consen 176 GVSTGYGAAWNTAKVEPGSTVAVFGL-GGVG 205 (375)
T ss_pred cccccchhhhhhcccCCCCEEEEEec-chHH
Confidence 99999999999999999999999986 6665
No 104
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.67 E-value=1.7e-15 Score=114.32 Aligned_cols=125 Identities=19% Similarity=0.258 Sum_probs=95.8
Q ss_pred eecccCCCCCCcEEEEEEEEeeCHHHHhhhcCC----CCC-CCcccceEEEEE--ecCCCCCCCCCEEEEc--------C
Q 048381 7 TVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKH----EDN-GPIEGFGVARVV--DLGHPEFKKGDLVWGT--------T 71 (135)
Q Consensus 7 ~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~----~~~-~~~~g~~~g~vv--~~~~~~~~~Gd~V~~~--------g 71 (135)
+.+.| +++++|++|++.++++|..+....... ..+ ...+.+++|+|+ ++++++|++||+|+++ +
T Consensus 19 ~~~~~-~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~~g 97 (328)
T cd08268 19 ELPVP-APGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFAVGDRVSVIPAADLGQYG 97 (328)
T ss_pred ecCCC-CCCCCeEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcCCCCCEEEeccccccCCCc
Confidence 44443 378999999999999998543222111 111 223457788875 4677889999999875 7
Q ss_pred CeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 72 GWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 72 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
++++|+.++.+. ++++|++ ++...++ .+.++++|||.++.+...++++++|+|+|+++++|
T Consensus 98 ~~~~~~~~~~~~-~~~~p~~-~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g 158 (328)
T cd08268 98 TYAEYALVPAAA-VVKLPDG-LSFVEAA-ALWMQYLTAYGALVELAGLRPGDSVLITAASSSVG 158 (328)
T ss_pred cceEEEEechHh-cEeCCCC-CCHHHHH-HhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHH
Confidence 899999999998 9999984 6665543 58889999999998888999999999999988765
No 105
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=99.67 E-value=2.1e-15 Score=113.16 Aligned_cols=125 Identities=25% Similarity=0.271 Sum_probs=96.5
Q ss_pred eecccCCCCCCcEEEEEEEEeeCHHHHhhhcCC-C-CCC-CcccceEEEEE--ecCCCCCCCCCEEEEc---CCeeeEEE
Q 048381 7 TVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKH-E-DNG-PIEGFGVARVV--DLGHPEFKKGDLVWGT---TGWEEYSV 78 (135)
Q Consensus 7 ~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~-~-~~~-~~~g~~~g~vv--~~~~~~~~~Gd~V~~~---g~~~~~~~ 78 (135)
+.+.+ +++++||+||+.++++|..+....... + .++ .++.+++|.|+ ++++++|++||+|+++ ++|++|+.
T Consensus 18 ~~~~~-~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~~~g~~~~~~~ 96 (320)
T cd05286 18 DVPVP-EPGPGEVLVRNTAIGVNFIDTYFRSGLYPLPLPFVLGVEGAGVVEAVGPGVTGFKVGDRVAYAGPPGAYAEYRV 96 (320)
T ss_pred ecCCC-CCCCCEEEEEEEEeecCHHHHHHhcCCCCCCCCccCCcceeEEEEEECCCCCCCCCCCEEEEecCCCceeEEEE
Confidence 34433 378999999999999998644322211 1 112 33446778775 4677889999999985 68999999
Q ss_pred ecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 79 IKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 79 ~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
++.+. ++++|++ ++..+++ .+.+.++|||+++.+..++++|++|+|+|++|++|
T Consensus 97 ~~~~~-~~~~p~~-~~~~~~~-~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g 150 (320)
T cd05286 97 VPASR-LVKLPDG-ISDETAA-ALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVG 150 (320)
T ss_pred ecHHH-ceeCCCC-CCHHHHh-hccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHH
Confidence 99997 9999984 7776654 47889999999999889999999999999988765
No 106
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=99.67 E-value=2e-15 Score=115.89 Aligned_cols=125 Identities=20% Similarity=0.224 Sum_probs=91.4
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC-CC--CCCC-cccceEEEEEe--cCCCCCCCCCEEEE-------
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK-HE--DNGP-IEGFGVARVVD--LGHPEFKKGDLVWG------- 69 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~-~~--~~~~-~~g~~~g~vv~--~~~~~~~~Gd~V~~------- 69 (135)
++..++|+|. ++++||+||+.++++|+.+...... .. .++. .+.+++|+|+. ++++.|++||+|++
T Consensus 12 ~~~~~~~~~~-~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~ 90 (337)
T cd08261 12 LEVVDIPEPV-PGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHELSGEVVEVGEGVAGLKVGDRVVVDPYISCG 90 (337)
T ss_pred eEEEECCCCC-CCCCeEEEEEEEEeEcccChHHHcCCCCcCCCCcccccccEEEEEEeCCCCCCCCCCCEEEECCCCCCC
Confidence 4445555543 7899999999999999854332211 11 1122 34467888764 56788999999986
Q ss_pred -----------------------cCCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEE
Q 048381 70 -----------------------TTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVF 126 (135)
Q Consensus 70 -----------------------~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~Vl 126 (135)
.|+|++|+.++++ ++++|++ ++.++++ .+ ..++|||+++ +..++++|++||
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~--~~~~p~~-~~~~~aa-~~-~~~~~a~~~~-~~~~l~~g~~vL 164 (337)
T cd08261 91 ECYACRKGRPNCCENLQVLGVHRDGGFAEYIVVPAD--ALLVPEG-LSLDQAA-LV-EPLAIGAHAV-RRAGVTAGDTVL 164 (337)
T ss_pred CChhhhCcCcccCCCCCeeeecCCCcceeEEEechh--eEECCCC-CCHHHhh-hh-chHHHHHHHH-HhcCCCCCCEEE
Confidence 3789999999987 8899985 7776653 34 6788999888 778999999999
Q ss_pred EecCCCCCC
Q 048381 127 VSAASGAVG 135 (135)
Q Consensus 127 V~ga~g~vG 135 (135)
|+| +|++|
T Consensus 165 I~g-~g~vG 172 (337)
T cd08261 165 VVG-AGPIG 172 (337)
T ss_pred EEC-CCHHH
Confidence 996 46654
No 107
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.67 E-value=1.4e-15 Score=117.14 Aligned_cols=126 Identities=17% Similarity=0.113 Sum_probs=92.7
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhh--cCCC----CCC-CcccceEEEEEe--cCCCCCCCCCEEEE----
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILM--TKHE----DNG-PIEGFGVARVVD--LGHPEFKKGDLVWG---- 69 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~--~~~~----~~~-~~~g~~~g~vv~--~~~~~~~~Gd~V~~---- 69 (135)
++.+++|.|. |.++||+||+.++++|+.+.... .... .++ ..+.+++|+|+. +++++|++||+|++
T Consensus 10 ~~~~~~~~~~-l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~ 88 (343)
T cd05285 10 LRLEERPIPE-PGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVGDRVAIEPGV 88 (343)
T ss_pred eeEEECCCCC-CCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCCCEEEEcccc
Confidence 3445555543 78999999999999998543221 1111 112 234478888864 66788999999985
Q ss_pred ---------------------------cCCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCC
Q 048381 70 ---------------------------TTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKG 122 (135)
Q Consensus 70 ---------------------------~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g 122 (135)
.|+|++|++++++. ++++|++ +++.+++ .+ ++++|||+++ +.+++++|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~-~~~lP~~-~~~~~aa-~~-~~~~~a~~~~-~~~~~~~g 163 (343)
T cd05285 89 PCRTCEFCKSGRYNLCPDMRFAATPPVDGTLCRYVNHPADF-CHKLPDN-VSLEEGA-LV-EPLSVGVHAC-RRAGVRPG 163 (343)
T ss_pred CCCCChhHhCcCcccCcCccccccccCCCceeeeEEecHHH-cEECcCC-CCHHHhh-hh-hHHHHHHHHH-HhcCCCCC
Confidence 37899999999997 9999985 7776653 34 5788999997 77899999
Q ss_pred CEEEEecCCCCCC
Q 048381 123 EYVFVSAASGAVG 135 (135)
Q Consensus 123 ~~VlV~ga~g~vG 135 (135)
++|||+|+ |++|
T Consensus 164 ~~vlI~g~-g~vG 175 (343)
T cd05285 164 DTVLVFGA-GPIG 175 (343)
T ss_pred CEEEEECC-CHHH
Confidence 99999864 6654
No 108
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=99.66 E-value=1.9e-15 Score=111.43 Aligned_cols=114 Identities=25% Similarity=0.229 Sum_probs=89.0
Q ss_pred cEEEEEEEEeeCHHHHhhhcCC-C---CCC-CcccceEEEEEe--cCCCCCCCCCEEEEc--------------------
Q 048381 18 TVPVKNLYLSCDPYSRILMTKH-E---DNG-PIEGFGVARVVD--LGHPEFKKGDLVWGT-------------------- 70 (135)
Q Consensus 18 eVlVkv~a~~ln~~~~~~~~~~-~---~~~-~~~g~~~g~vv~--~~~~~~~~Gd~V~~~-------------------- 70 (135)
||+||+.++++|+.+....... . .++ ..+.+++|+|+. ++++.|++||+|++.
T Consensus 1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T cd05188 1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRELCPGGGI 80 (271)
T ss_pred CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHhhCCCCCE
Confidence 6899999999998654333221 1 112 234478888854 667889999999973
Q ss_pred ------CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 71 ------TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 71 ------g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
|+|++|+.++.+. ++++|++ +++.+++ .+++++.|||+++.+...+++|++|||+|+++ +|
T Consensus 81 ~~~~~~g~~~~~~~v~~~~-~~~ip~~-~~~~~a~-~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~-~G 147 (271)
T cd05188 81 LGEGLDGGFAEYVVVPADN-LVPLPDG-LSLEEAA-LLPEPLATAYHALRRAGVLKPGDTVLVLGAGG-VG 147 (271)
T ss_pred eccccCCcceEEEEechHH-eEECCCC-CCHHHhh-HhcCHHHHHHHHHHhccCCCCCCEEEEECCCH-HH
Confidence 6799999999998 9999984 7776654 57789999999999888889999999999876 54
No 109
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=99.64 E-value=3.9e-15 Score=111.51 Aligned_cols=120 Identities=27% Similarity=0.353 Sum_probs=93.6
Q ss_pred CCCCCcEEEEEEEEeeCHHHHhhhcCC------CCCCC-cccceEEEEE--ecCCCCCCCCCEEEEc------CCeeeEE
Q 048381 13 AEGSNTVPVKNLYLSCDPYSRILMTKH------EDNGP-IEGFGVARVV--DLGHPEFKKGDLVWGT------TGWEEYS 77 (135)
Q Consensus 13 ~p~~~eVlVkv~a~~ln~~~~~~~~~~------~~~~~-~~g~~~g~vv--~~~~~~~~~Gd~V~~~------g~~~~~~ 77 (135)
+++++||+||+.++++|+.++...... ..++. .+.+++|.|+ +++++++++||+|++. ++|++|+
T Consensus 24 ~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~G~~V~~~~~~~~~g~~~~~~ 103 (309)
T cd05289 24 EPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTGFKVGDEVFGMTPFTRGGAYAEYV 103 (309)
T ss_pred CCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCCCCCCCEEEEccCCCCCCcceeEE
Confidence 378999999999999998754333211 11122 3346778775 4667789999999984 6899999
Q ss_pred EecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 78 VIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 78 ~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
.++.+. ++++|++ ++...++ .+.+.+.|||+++.+..++++|++|+|+|++|++|
T Consensus 104 ~~~~~~-~~~~p~~-~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g 158 (309)
T cd05289 104 VVPADE-LALKPAN-LSFEEAA-ALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVG 158 (309)
T ss_pred EecHHH-hccCCCC-CCHHHHH-hhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHH
Confidence 999997 9999984 6766543 57788999999998888899999999999988765
No 110
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=99.64 E-value=2.7e-15 Score=114.67 Aligned_cols=124 Identities=23% Similarity=0.234 Sum_probs=91.7
Q ss_pred eeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC-C--CCCCC-cccceEEEEEe--cCCCCCCCCCEEE-----------
Q 048381 6 ATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK-H--EDNGP-IEGFGVARVVD--LGHPEFKKGDLVW----------- 68 (135)
Q Consensus 6 ~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~-~--~~~~~-~~g~~~g~vv~--~~~~~~~~Gd~V~----------- 68 (135)
++.|.|. +.++||+||+.++++|+.+...... . ..++. .+.+++|+|+. +++++|++||+|+
T Consensus 15 ~~~~~~~-~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~~~~~~~~~ 93 (330)
T cd08245 15 EEVPVPE-PGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHEIVGEVVEVGAGVEGRKVGDRVGVGWLVGSCGRC 93 (330)
T ss_pred EeccCCC-CCCCeEEEEEEEEeccHHHHHHHcCCCCCCCCCcccCccceEEEEEECCCCcccccCCEEEEccccCCCCCC
Confidence 3444433 6899999999999999854322211 1 11122 34478888864 6678899999997
Q ss_pred -----------------E---cCCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEe
Q 048381 69 -----------------G---TTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVS 128 (135)
Q Consensus 69 -----------------~---~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ 128 (135)
+ .++|++|+.++.+. ++++|++ +++++++ .+.+.++|||.++.+ .++++|++|||+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~-~~~~p~~-~~~~~~~-~l~~~~~ta~~~l~~-~~~~~~~~vlI~ 169 (330)
T cd08245 94 EYCRRGLENLCQKAVNTGYTTQGGYAEYMVADAEY-TVLLPDG-LPLAQAA-PLLCAGITVYSALRD-AGPRPGERVAVL 169 (330)
T ss_pred hhhhCcCcccCcCccccCcccCCccccEEEEcHHH-eEECCCC-CCHHHhh-hhhhhHHHHHHHHHh-hCCCCCCEEEEE
Confidence 2 37899999999998 9999984 7776654 588899999999966 789999999999
Q ss_pred cCCCCCC
Q 048381 129 AASGAVG 135 (135)
Q Consensus 129 ga~g~vG 135 (135)
|+ |++|
T Consensus 170 g~-g~iG 175 (330)
T cd08245 170 GI-GGLG 175 (330)
T ss_pred CC-CHHH
Confidence 65 5454
No 111
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.64 E-value=3.4e-15 Score=112.77 Aligned_cols=125 Identities=19% Similarity=0.119 Sum_probs=90.6
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhh-cCCC---C--CC-CcccceEEEEE--ecCCCCCCCCCEEEEc--C
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILM-TKHE---D--NG-PIEGFGVARVV--DLGHPEFKKGDLVWGT--T 71 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~-~~~~---~--~~-~~~g~~~g~vv--~~~~~~~~~Gd~V~~~--g 71 (135)
++.++++.|. +.++||+||+.++++|+.+...+ .... . .+ ..+.+++|+|+ ++++++|++||+|+++ +
T Consensus 7 ~~~~~~~~~~-l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~g 85 (312)
T cd08269 7 FEVEEHPRPT-PGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAGLSGG 85 (312)
T ss_pred eEEEECCCCC-CCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEEEecCC
Confidence 3444555443 78999999999999998543222 1110 0 01 23447788875 4667889999999985 8
Q ss_pred CeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 72 GWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 72 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
+|++|+.++.+. ++++|++ + .. ++...++++|||+++. ..++++|++|+|+| +|++|
T Consensus 86 ~~~~~~~v~~~~-~~~lP~~-~--~~-~~~~~~~~~~a~~~~~-~~~~~~~~~vlI~g-~g~vg 142 (312)
T cd08269 86 AFAEYDLADADH-AVPLPSL-L--DG-QAFPGEPLGCALNVFR-RGWIRAGKTVAVIG-AGFIG 142 (312)
T ss_pred cceeeEEEchhh-eEECCCc-h--hh-hHHhhhhHHHHHHHHH-hcCCCCCCEEEEEC-CCHHH
Confidence 999999999998 9999985 4 22 2222378899999986 78899999999996 56664
No 112
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=99.64 E-value=5.1e-15 Score=112.76 Aligned_cols=125 Identities=16% Similarity=0.046 Sum_probs=87.0
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCCCCCC-CcccceEEEEEecCCCCCCCCCEEEE------------
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKHEDNG-PIEGFGVARVVDLGHPEFKKGDLVWG------------ 69 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~~~~~-~~~g~~~g~vv~~~~~~~~~Gd~V~~------------ 69 (135)
++.+++|.|. |+++||+||++++++|+.+.........++ ..+.+++|+|+..+.. +++||+|..
T Consensus 12 ~~~~~~~~p~-~~~~~vlV~v~a~~i~~~d~~~~~g~~~~~~~~G~e~~G~Vv~~G~~-~~~G~~V~~~~~~~~~~~~~~ 89 (319)
T cd08242 12 LRVEDLPKPE-PPPGEALVRVLLAGICNTDLEIYKGYYPFPGVPGHEFVGIVEEGPEA-ELVGKRVVGEINIACGRCEYC 89 (319)
T ss_pred EEEEECCCCC-CCCCeEEEEEEEEEEccccHHHHcCCCCCCCccCceEEEEEEEeCCC-CCCCCeEEECCCcCCCCChhh
Confidence 4455555543 789999999999999986443332211122 3345788998765433 789999962
Q ss_pred -------------------cCCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecC
Q 048381 70 -------------------TTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAA 130 (135)
Q Consensus 70 -------------------~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga 130 (135)
.|+|++|+.++.+. ++++|++ ++.++++ ...+..++|. +.+..++++|++|||+|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~-~~~lP~~-~~~~~aa--~~~~~~~~~~-~~~~~~~~~g~~vlV~g- 163 (319)
T cd08242 90 RRGLYTHCPNRTVLGIVDRDGAFAEYLTLPLEN-LHVVPDL-VPDEQAV--FAEPLAAALE-ILEQVPITPGDKVAVLG- 163 (319)
T ss_pred hCcCcccCCCCcccCccCCCCceEEEEEechHH-eEECcCC-CCHHHhh--hhhHHHHHHH-HHHhcCCCCCCEEEEEC-
Confidence 26799999999998 9999985 6665543 2134445554 44778899999999996
Q ss_pred CCCCC
Q 048381 131 SGAVG 135 (135)
Q Consensus 131 ~g~vG 135 (135)
+|++|
T Consensus 164 ~g~vg 168 (319)
T cd08242 164 DGKLG 168 (319)
T ss_pred CCHHH
Confidence 57664
No 113
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=99.64 E-value=5.7e-15 Score=111.32 Aligned_cols=120 Identities=17% Similarity=0.245 Sum_probs=93.1
Q ss_pred CCCCCcEEEEEEEEeeCHHHHhhhcC-CCC---CCC-cccceEEEEE--ecCCCCCCCCCEEEEc---CCeeeEEEecCC
Q 048381 13 AEGSNTVPVKNLYLSCDPYSRILMTK-HED---NGP-IEGFGVARVV--DLGHPEFKKGDLVWGT---TGWEEYSVIKNP 82 (135)
Q Consensus 13 ~p~~~eVlVkv~a~~ln~~~~~~~~~-~~~---~~~-~~g~~~g~vv--~~~~~~~~~Gd~V~~~---g~~~~~~~~~~~ 82 (135)
+++++|++||+.++++|+.+...... ... ++. .+.+++|.|. +++++++++||+|++. ++|++|+.++.+
T Consensus 24 ~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~ 103 (325)
T TIGR02824 24 VPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRWKVGDRVCALVAGGGYAEYVAVPAG 103 (325)
T ss_pred CCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCCCCCCEEEEccCCCcceeEEEecHH
Confidence 36899999999999999854322211 111 112 3346778775 4667889999999985 789999999999
Q ss_pred CceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 83 EGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 83 ~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
. ++++|++ ++...++ .+.++++|||+++.+...+++|++|+|+|++|++|
T Consensus 104 ~-~~~ip~~-~~~~~~~-~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g 153 (325)
T TIGR02824 104 Q-VLPVPEG-LSLVEAA-ALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIG 153 (325)
T ss_pred H-cEeCCCC-CCHHHHH-hhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHH
Confidence 7 9999984 6665543 58889999999998889999999999999988764
No 114
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=99.64 E-value=4.9e-15 Score=109.54 Aligned_cols=116 Identities=20% Similarity=0.203 Sum_probs=91.5
Q ss_pred CcEEEEEEEEeeCHHHHhhhcCC-CCCCCc-ccceEEEEE--ecCCCCCCCCCEEEEc--CCeeeEEEecCCCceEEcCC
Q 048381 17 NTVPVKNLYLSCDPYSRILMTKH-EDNGPI-EGFGVARVV--DLGHPEFKKGDLVWGT--TGWEEYSVIKNPEGLFKIHQ 90 (135)
Q Consensus 17 ~eVlVkv~a~~ln~~~~~~~~~~-~~~~~~-~g~~~g~vv--~~~~~~~~~Gd~V~~~--g~~~~~~~~~~~~~~~~~p~ 90 (135)
+||+||+.++++|+.+....... +.++.. +.+++|+++ ++++++|++||+|+++ ++|+||+.++.+. ++++|+
T Consensus 1 ~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~~g~~~~~~~~~~~~-~~~~p~ 79 (293)
T cd05195 1 DEVEVEVKAAGLNFRDVLVALGLLPGDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLAPGAFATHVRVDARL-VVKIPD 79 (293)
T ss_pred CceEEEEEEEecCHHHHHHHhCCCCCCCCccceeeeEEEEeecCCccCCCCCCEEEEEecCcccceEEechhh-eEeCCC
Confidence 58999999999998654333221 112223 346778775 4667889999999987 7999999999998 999998
Q ss_pred CCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 91 TELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 91 ~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
+ ++..+++ .+.+++.|||.++.+..++++|++|+|+|++|++|
T Consensus 80 ~-~~~~~~~-~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~g~~g 122 (293)
T cd05195 80 S-LSFEEAA-TLPVAYLTAYYALVDLARLQKGESVLIHAAAGGVG 122 (293)
T ss_pred C-CCHHHHh-hchHHHHHHHHHHHHHhccCCCCEEEEecCCCHHH
Confidence 4 6776554 47789999999998888999999999999888765
No 115
>PLN02702 L-idonate 5-dehydrogenase
Probab=99.64 E-value=4e-15 Score=115.66 Aligned_cols=125 Identities=14% Similarity=0.049 Sum_probs=90.1
Q ss_pred eeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCC-----C-CCC-CcccceEEEEEe--cCCCCCCCCCEEEE-----
Q 048381 4 TSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKH-----E-DNG-PIEGFGVARVVD--LGHPEFKKGDLVWG----- 69 (135)
Q Consensus 4 ~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~-----~-~~~-~~~g~~~g~vv~--~~~~~~~~Gd~V~~----- 69 (135)
+.+++|.| +|+++||+||+.++++|+.+...+... . .++ ..+.+++|+|+. +++++|++||+|++
T Consensus 30 ~~~~~~~p-~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~ 108 (364)
T PLN02702 30 KIQPFKLP-PLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKHLVVGDRVALEPGIS 108 (364)
T ss_pred EEEeccCC-CCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEcCCCC
Confidence 33455544 378999999999999998654332210 1 112 234478888865 66788999999986
Q ss_pred --------------------------cCCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCC
Q 048381 70 --------------------------TTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGE 123 (135)
Q Consensus 70 --------------------------~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~ 123 (135)
.|+|+||+.++.+. ++++|++ +++.+++ +..+..+||+++ +..++++|+
T Consensus 109 ~~~c~~c~~g~~~~c~~~~~~~~~~~~g~~~~y~~v~~~~-~~~~P~~-l~~~~aa--~~~~~~~a~~~~-~~~~~~~g~ 183 (364)
T PLN02702 109 CWRCNLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPADL-CFKLPEN-VSLEEGA--MCEPLSVGVHAC-RRANIGPET 183 (364)
T ss_pred CCCCcchhCcCcccCCCccccCCCCCCCcccceEEcchHH-eEECCCC-CCHHHHh--hhhHHHHHHHHH-HhcCCCCCC
Confidence 37899999999998 9999985 7776543 223455688887 678899999
Q ss_pred EEEEecCCCCCC
Q 048381 124 YVFVSAASGAVG 135 (135)
Q Consensus 124 ~VlV~ga~g~vG 135 (135)
+|+|+| +|++|
T Consensus 184 ~vlI~g-~g~vG 194 (364)
T PLN02702 184 NVLVMG-AGPIG 194 (364)
T ss_pred EEEEEC-CCHHH
Confidence 999996 46654
No 116
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=99.62 E-value=6e-15 Score=113.57 Aligned_cols=123 Identities=22% Similarity=0.246 Sum_probs=89.7
Q ss_pred eeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC------CCCCC-CcccceEEEEEe--cCCCCCCCCCEEEE------
Q 048381 5 SATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK------HEDNG-PIEGFGVARVVD--LGHPEFKKGDLVWG------ 69 (135)
Q Consensus 5 ~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~------~~~~~-~~~g~~~g~vv~--~~~~~~~~Gd~V~~------ 69 (135)
.+++|.|. |+++||+||+.++++|+.+...+.. ...++ ..+.+++|+|+. +++++|++||+|++
T Consensus 13 l~~~~~p~-~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~ 91 (340)
T TIGR00692 13 LTEVPVPE-PGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVSVETHIVC 91 (340)
T ss_pred EEECCCCC-CCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEEECCcCCC
Confidence 34455443 7899999999999999854332211 10112 234478888864 67888999999986
Q ss_pred ------------------------cCCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEE
Q 048381 70 ------------------------TTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYV 125 (135)
Q Consensus 70 ------------------------~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~V 125 (135)
.|+|++|+.++++. ++++|++ ++.++ +++.+++.+||+++. .++++|++|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~lp~~-~~~~~--a~~~~~~~~a~~~~~--~~~~~g~~v 165 (340)
T TIGR00692 92 GKCYACRRGQYHVCQNTKIFGVDTDGCFAEYAVVPAQN-IWKNPKS-IPPEY--ATIQEPLGNAVHTVL--AGPISGKSV 165 (340)
T ss_pred CCChhhhCcChhhCcCcceEeecCCCcceeEEEeehHH-cEECcCC-CChHh--hhhcchHHHHHHHHH--ccCCCCCEE
Confidence 27899999999998 9999985 66643 246778899998873 457899999
Q ss_pred EEecCCCCCC
Q 048381 126 FVSAASGAVG 135 (135)
Q Consensus 126 lV~ga~g~vG 135 (135)
+|+| +|++|
T Consensus 166 lI~~-~g~vg 174 (340)
T TIGR00692 166 LVTG-AGPIG 174 (340)
T ss_pred EEEC-CCHHH
Confidence 9976 46654
No 117
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.62 E-value=1.1e-14 Score=110.79 Aligned_cols=125 Identities=23% Similarity=0.324 Sum_probs=93.8
Q ss_pred eeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCC-CC---CC-CcccceEEEEE--ecCCCCCCCCCEEEEc--------
Q 048381 6 ATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKH-ED---NG-PIEGFGVARVV--DLGHPEFKKGDLVWGT-------- 70 (135)
Q Consensus 6 ~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~-~~---~~-~~~g~~~g~vv--~~~~~~~~~Gd~V~~~-------- 70 (135)
++.++| .++++|++||+.++++|+.++...... .. .+ ..+.+++|.|+ ++++++|++||+|++.
T Consensus 18 ~~~~~~-~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~~ 96 (336)
T cd08276 18 VEEPVP-EPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFKVGDRVVPTFFPNWLDG 96 (336)
T ss_pred EeccCC-CCCCCeEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCCCCCCEEEEecccccccc
Confidence 344444 378999999999999999654332211 11 11 23446778775 4677889999999874
Q ss_pred ----------------CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCC
Q 048381 71 ----------------TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAV 134 (135)
Q Consensus 71 ----------------g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~v 134 (135)
|+|++|+.++.+. ++++|++ ++..+++ .+.++++|||+++.+.+++++|++|+|+| +|++
T Consensus 97 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~lp~~-~~~~~a~-~~~~~~~~a~~~l~~~~~~~~g~~vli~g-~g~~ 172 (336)
T cd08276 97 PPTAEDEASALGGPIDGVLAEYVVLPEEG-LVRAPDH-LSFEEAA-TLPCAGLTAWNALFGLGPLKPGDTVLVQG-TGGV 172 (336)
T ss_pred cccccccccccccccCceeeeEEEecHHH-eEECCCC-CCHHHhh-hhhHHHHHHHHHHHhhcCCCCCCEEEEEC-CcHH
Confidence 5799999999997 9999984 6765543 57889999999998888999999999995 5655
Q ss_pred C
Q 048381 135 G 135 (135)
Q Consensus 135 G 135 (135)
|
T Consensus 173 g 173 (336)
T cd08276 173 S 173 (336)
T ss_pred H
Confidence 4
No 118
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.61 E-value=1.7e-14 Score=111.01 Aligned_cols=128 Identities=19% Similarity=0.061 Sum_probs=89.1
Q ss_pred eeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcCC-C-CCC-CcccceEEEEEe--cCCCCCCCCCEEEE-c-------
Q 048381 4 TSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTKH-E-DNG-PIEGFGVARVVD--LGHPEFKKGDLVWG-T------- 70 (135)
Q Consensus 4 ~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~~-~-~~~-~~~g~~~g~vv~--~~~~~~~~Gd~V~~-~------- 70 (135)
+.+++|.|.|++++||+||+.++++|+.+....... + .++ ..+.+++|+|+. ++++++++||+|++ .
T Consensus 13 ~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~ 92 (345)
T cd08287 13 RVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSPTRAPAPIGHEFVGVVEEVGSEVTSVKPGDFVIAPFAISDGTC 92 (345)
T ss_pred eEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCCCCCCcccccceEEEEEEeCCCCCccCCCCEEEeccccCCCCC
Confidence 344455443348999999999999998643222111 1 112 234478888864 67788999999986 1
Q ss_pred ----------------------CCeeeEEEecCC--CceEEcCCCCCChhhhh----hccChHHHHHHHHHHhhcCCCCC
Q 048381 71 ----------------------TGWEEYSVIKNP--EGLFKIHQTELPLSYYS----GILGMPGMIAWAGFYEIRAPKKG 122 (135)
Q Consensus 71 ----------------------g~~~~~~~~~~~--~~~~~~p~~~~~~~~~~----~~l~~~~~TA~~~l~~~~~~~~g 122 (135)
|+|+||+.++.+ . ++++|++ ++.+.+. +++...+.|||+++. .+++++|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~-~~~lP~~-l~~~~~~~~~~~~l~~~~~~a~~~~~-~~~~~~g 169 (345)
T cd08287 93 PFCRAGFTTSCVHGGFWGAFVDGGQGEYVRVPLADGT-LVKVPGS-PSDDEDLLPSLLALSDVMGTGHHAAV-SAGVRPG 169 (345)
T ss_pred hhhhCcCcccCCCCCcccCCCCCceEEEEEcchhhCc-eEECCCC-CChhhhhhhhhHhhhcHHHHHHHHHH-hcCCCCC
Confidence 678999999974 6 9999985 6652211 123357889999984 6789999
Q ss_pred CEEEEecCCCCCC
Q 048381 123 EYVFVSAASGAVG 135 (135)
Q Consensus 123 ~~VlV~ga~g~vG 135 (135)
++|+|.| +|++|
T Consensus 170 ~~vlI~g-~g~vg 181 (345)
T cd08287 170 STVVVVG-DGAVG 181 (345)
T ss_pred CEEEEEC-CCHHH
Confidence 9999976 56654
No 119
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=99.59 E-value=1.8e-14 Score=110.93 Aligned_cols=125 Identities=24% Similarity=0.180 Sum_probs=88.0
Q ss_pred eeeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhcC------CCCCC-CcccceEEEEEe--cCCCCCCCCCEEEEc---
Q 048381 3 LTSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMTK------HEDNG-PIEGFGVARVVD--LGHPEFKKGDLVWGT--- 70 (135)
Q Consensus 3 ~~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~~------~~~~~-~~~g~~~g~vv~--~~~~~~~~Gd~V~~~--- 70 (135)
++..++|.|. |+++||+||++++++|+.+...+.. ...++ ..+.+++|+|+. +++++|++||+|++.
T Consensus 13 ~~~~~~~~p~-~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~ 91 (341)
T PRK05396 13 LWLTDVPVPE-PGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFKVGDRVSGEGHI 91 (341)
T ss_pred eEEEECCCCC-CCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCcCCCCCEEEECCCC
Confidence 4445555543 7999999999999999864322111 11112 234478888864 678899999999963
Q ss_pred ---------------------------CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCC
Q 048381 71 ---------------------------TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGE 123 (135)
Q Consensus 71 ---------------------------g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~ 123 (135)
|+|++|+.++.+. ++++|++ +++.+++ +...+.++++++.. ..++|+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~-~~~iP~~-l~~~~~~--~~~~~~~~~~~~~~--~~~~g~ 165 (341)
T PRK05396 92 VCGHCRNCRAGRRHLCRNTKGVGVNRPGAFAEYLVIPAFN-VWKIPDD-IPDDLAA--IFDPFGNAVHTALS--FDLVGE 165 (341)
T ss_pred CCCCChhhhCcChhhCCCcceeeecCCCcceeeEEechHH-eEECcCC-CCHHHhH--hhhHHHHHHHHHHc--CCCCCC
Confidence 7899999999997 9999985 7766543 33566677666643 346899
Q ss_pred EEEEecCCCCCC
Q 048381 124 YVFVSAASGAVG 135 (135)
Q Consensus 124 ~VlV~ga~g~vG 135 (135)
+|+|+|+ |++|
T Consensus 166 ~vlV~~~-g~vg 176 (341)
T PRK05396 166 DVLITGA-GPIG 176 (341)
T ss_pred eEEEECC-CHHH
Confidence 9999874 6654
No 120
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.57 E-value=3.8e-14 Score=109.13 Aligned_cols=124 Identities=20% Similarity=0.207 Sum_probs=88.9
Q ss_pred eeeeecccCCCCCCcEEEEEEEEeeCHHHHhhhc------CCCCCC-CcccceEEEEEe--cCCCCCCCCCEEEEc----
Q 048381 4 TSATVSLKVAEGSNTVPVKNLYLSCDPYSRILMT------KHEDNG-PIEGFGVARVVD--LGHPEFKKGDLVWGT---- 70 (135)
Q Consensus 4 ~~~~~~~~~~p~~~eVlVkv~a~~ln~~~~~~~~------~~~~~~-~~~g~~~g~vv~--~~~~~~~~Gd~V~~~---- 70 (135)
+.+++|.|. |+++|++||+.++++|+.+...+. ....++ ..+.+.+|+|+. ++++.|++||+|++.
T Consensus 14 ~~~~~~~~~-~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~ 92 (341)
T cd05281 14 ELVEVPVPK-PGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVKVGDYVSAETHIV 92 (341)
T ss_pred EEEeCCCCC-CCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCCCCCCCEEEECCccC
Confidence 344555443 789999999999999985432211 111112 234477888864 667789999999873
Q ss_pred --------------------------CCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCE
Q 048381 71 --------------------------TGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEY 124 (135)
Q Consensus 71 --------------------------g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~ 124 (135)
|+|++|++++.+. ++++|++ ++.+. +++..++.+||+++. ...++|++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~-~~~lP~~-~~~~~--a~~~~~~~~a~~~~~--~~~~~g~~ 166 (341)
T cd05281 93 CGKCYQCRTGNYHVCQNTKILGVDTDGCFAEYVVVPEEN-LWKNDKD-IPPEI--ASIQEPLGNAVHTVL--AGDVSGKS 166 (341)
T ss_pred CCCChHHHCcCcccCcccceEeccCCCcceEEEEechHH-cEECcCC-CCHHH--hhhhhHHHHHHHHHH--hcCCCCCE
Confidence 7899999999997 9999985 66633 346678889998875 35679999
Q ss_pred EEEecCCCCCC
Q 048381 125 VFVSAASGAVG 135 (135)
Q Consensus 125 VlV~ga~g~vG 135 (135)
|||+|+ |++|
T Consensus 167 vlV~g~-g~vg 176 (341)
T cd05281 167 VLITGC-GPIG 176 (341)
T ss_pred EEEECC-CHHH
Confidence 999864 6654
No 121
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=99.55 E-value=7.8e-14 Score=103.17 Aligned_cols=112 Identities=18% Similarity=0.195 Sum_probs=88.2
Q ss_pred EEEEEEeeCHHHHhhhcCCCCCC-CcccceEEEEE--ecCCCCCCCCCEEEEc--CCeeeEEEecCCCceEEcCCCCCCh
Q 048381 21 VKNLYLSCDPYSRILMTKHEDNG-PIEGFGVARVV--DLGHPEFKKGDLVWGT--TGWEEYSVIKNPEGLFKIHQTELPL 95 (135)
Q Consensus 21 Vkv~a~~ln~~~~~~~~~~~~~~-~~~g~~~g~vv--~~~~~~~~~Gd~V~~~--g~~~~~~~~~~~~~~~~~p~~~~~~ 95 (135)
||+.++++|+.+...+......+ ..+.+++|+|+ ++++++|++||+|+++ |+|++|+.++.+. ++++|++ +++
T Consensus 2 i~v~~~~i~~~d~~~~~g~~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~g~~~~~~~~~~~~-~~~~p~~-~~~ 79 (288)
T smart00829 2 VEVRAAGLNFRDVLIALGLLPGEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLAPGSFATYVRTDARL-VVPIPDG-LSF 79 (288)
T ss_pred eeEEEEecCHHHHHHhcCCCCCCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEcCCceeeEEEccHHH-eEECCCC-CCH
Confidence 89999999986543332211112 33447788775 4667889999999986 8999999999998 9999984 777
Q ss_pred hhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 96 SYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 96 ~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
.+++ .+.++++|||.++.+...+++|++|+|+|++|++|
T Consensus 80 ~~~~-~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~~~~g 118 (288)
T smart00829 80 EEAA-TVPVVFLTAYYALVDLARLRPGESVLIHAAAGGVG 118 (288)
T ss_pred HHHH-hchHHHHHHHHHHHHHhCCCCCCEEEEecCCcHHH
Confidence 6654 58889999999998888999999999999888764
No 122
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=99.54 E-value=2e-13 Score=102.65 Aligned_cols=117 Identities=20% Similarity=0.178 Sum_probs=90.2
Q ss_pred CCcEEEEEEEEeeCHHHHhhhcC-C---CCCC-CcccceEEEEE--ecCCCCCCCCCEEEEc---CCeeeEEEecCCCce
Q 048381 16 SNTVPVKNLYLSCDPYSRILMTK-H---EDNG-PIEGFGVARVV--DLGHPEFKKGDLVWGT---TGWEEYSVIKNPEGL 85 (135)
Q Consensus 16 ~~eVlVkv~a~~ln~~~~~~~~~-~---~~~~-~~~g~~~g~vv--~~~~~~~~~Gd~V~~~---g~~~~~~~~~~~~~~ 85 (135)
++|++||+.++++|..+...... . ..++ ..+.+.+|.|+ +++++++++||+|+++ ++|++|+.++.+. +
T Consensus 27 ~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~~~~~~~~~~~~~~~~-~ 105 (323)
T cd08241 27 PGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGFKVGDRVVALTGQGGFAEEVVVPAAA-V 105 (323)
T ss_pred CCeEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCCCCCCCEEEEecCCceeEEEEEcCHHH-c
Confidence 59999999999999864332211 1 1112 23346778775 4567789999999985 6899999999997 9
Q ss_pred EEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 86 FKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 86 ~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
+++|++ ++..+++ .+.+++.+||+++.+..++++|++|+|+|++|++|
T Consensus 106 ~~ip~~-~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g 153 (323)
T cd08241 106 FPLPDG-LSFEEAA-ALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVG 153 (323)
T ss_pred eeCCCC-CCHHHHh-hhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHH
Confidence 999984 6665543 57889999999998888999999999999988765
No 123
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=99.49 E-value=5.3e-13 Score=104.11 Aligned_cols=117 Identities=24% Similarity=0.240 Sum_probs=83.5
Q ss_pred CCCCcEEEEEEEEeeCHHHHhhhcCCC-C--CC--CcccceEEEEEecC-CCCCCCCCEEEEc-----------------
Q 048381 14 EGSNTVPVKNLYLSCDPYSRILMTKHE-D--NG--PIEGFGVARVVDLG-HPEFKKGDLVWGT----------------- 70 (135)
Q Consensus 14 p~~~eVlVkv~a~~ln~~~~~~~~~~~-~--~~--~~~g~~~g~vv~~~-~~~~~~Gd~V~~~----------------- 70 (135)
++|+||+||++++||+-.+...+.... . .+ .++.+.+|+|++.+ ++.|++||||+..
T Consensus 23 ~~p~~vlVkv~~~gICGSDlh~~~g~~~~~~~~~~i~GHE~~G~V~evG~~~~~~~GdrVvv~~~~~Cg~C~~C~~G~~~ 102 (350)
T COG1063 23 PGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGHEFVGEVVEVGVVRGFKVGDRVVVEPNIPCGHCRYCRAGEYN 102 (350)
T ss_pred CCCCeEEEEEEEEeEchhhhhhccCCCCCCCCCCcccCccceEEEEEeccccCCCCCCEEEECCCcCCCCChhHhCcCcc
Confidence 789999999999999987654443321 1 12 33458899887655 5679999999841
Q ss_pred ------------------CCeeeEEEecCCCceEE-cCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCC
Q 048381 71 ------------------TGWEEYSVIKNPEGLFK-IHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAAS 131 (135)
Q Consensus 71 ------------------g~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~ 131 (135)
|+|+||+.+|.++ +++ +|++ ++.+ .+++.-+..|+|++.......+++++|+|.|+
T Consensus 103 ~C~~~~~~g~~~~~~~~~G~~aEyv~vp~~~-~~~~~pd~-~~~~--~aal~epla~~~~~~a~~~~~~~~~~V~V~Ga- 177 (350)
T COG1063 103 LCENPGFYGYAGLGGGIDGGFAEYVRVPADF-NLAKLPDG-IDEE--AAALTEPLATAYHGHAERAAVRPGGTVVVVGA- 177 (350)
T ss_pred cCCCccccccccccCCCCCceEEEEEecccc-CeecCCCC-CChh--hhhhcChhhhhhhhhhhccCCCCCCEEEEECC-
Confidence 4789999999865 555 4663 3333 34588889999887555555666679999997
Q ss_pred CCCC
Q 048381 132 GAVG 135 (135)
Q Consensus 132 g~vG 135 (135)
|.+|
T Consensus 178 GpIG 181 (350)
T COG1063 178 GPIG 181 (350)
T ss_pred CHHH
Confidence 6554
No 124
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=99.42 E-value=1.1e-12 Score=86.26 Aligned_cols=72 Identities=28% Similarity=0.249 Sum_probs=51.9
Q ss_pred CCcEEEEEEEEeeCHHHHhhhcC----CCCCCCccc-ceEEEEEe--cCCCCCCCCCEEEEc------------------
Q 048381 16 SNTVPVKNLYLSCDPYSRILMTK----HEDNGPIEG-FGVARVVD--LGHPEFKKGDLVWGT------------------ 70 (135)
Q Consensus 16 ~~eVlVkv~a~~ln~~~~~~~~~----~~~~~~~~g-~~~g~vv~--~~~~~~~~Gd~V~~~------------------ 70 (135)
|||||||++++|||+.|...+.. ...++.+.| +.+|+|++ +++++|++||+|+..
T Consensus 1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~ 80 (109)
T PF08240_consen 1 PGEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNL 80 (109)
T ss_dssp TTEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGG
T ss_pred CCEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCcccc
Confidence 68999999999999976544433 111233444 88999975 678899999999962
Q ss_pred ------------CCeeeEEEecCCCceEEc
Q 048381 71 ------------TGWEEYSVIKNPEGLFKI 88 (135)
Q Consensus 71 ------------g~~~~~~~~~~~~~~~~~ 88 (135)
|+|+||++++++. ++|+
T Consensus 81 c~~~~~~g~~~~G~~aey~~v~~~~-~~~v 109 (109)
T PF08240_consen 81 CPNPEVLGLGLDGGFAEYVVVPARN-LVPV 109 (109)
T ss_dssp TTTBEETTTSSTCSSBSEEEEEGGG-EEEE
T ss_pred CCCCCEeEcCCCCcccCeEEEehHH-EEEC
Confidence 6788999998887 7764
No 125
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=99.36 E-value=3.4e-12 Score=96.22 Aligned_cols=85 Identities=22% Similarity=0.239 Sum_probs=67.7
Q ss_pred ccceEEEEEe--cCCC------CCCCCCEEEE-------------------------------------cCCeeeEEEec
Q 048381 46 EGFGVARVVD--LGHP------EFKKGDLVWG-------------------------------------TTGWEEYSVIK 80 (135)
Q Consensus 46 ~g~~~g~vv~--~~~~------~~~~Gd~V~~-------------------------------------~g~~~~~~~~~ 80 (135)
+.+.+|+|++ ++++ +|++||||+. .|+|+||++++
T Consensus 3 GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~~~~~~~G~~aey~~v~ 82 (280)
T TIGR03366 3 GHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKYGHEALDSGWPLSGGYAEHCHLP 82 (280)
T ss_pred CcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhhcCcccccCCccccccceeeEEec
Confidence 4578888865 6787 8999999963 16789999999
Q ss_pred CC-CceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 81 NP-EGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 81 ~~-~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
++ . ++++|++ ++++.++ .+.+++.|||+++.+. ..++|++|||+|+ |++|
T Consensus 83 ~~~~-~~~lP~~-~~~~~aa-~l~~~~~ta~~al~~~-~~~~g~~VlV~G~-G~vG 133 (280)
T TIGR03366 83 AGTA-IVPVPDD-LPDAVAA-PAGCATATVMAALEAA-GDLKGRRVLVVGA-GMLG 133 (280)
T ss_pred CCCc-EEECCCC-CCHHHhh-HhhhHHHHHHHHHHhc-cCCCCCEEEEECC-CHHH
Confidence 87 7 9999985 7776554 5778899999999654 4569999999986 6665
No 126
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=99.27 E-value=3e-11 Score=90.19 Aligned_cols=85 Identities=29% Similarity=0.293 Sum_probs=70.2
Q ss_pred cccceEEEEE--ecCCCCCCCCCEEEEcCCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCC
Q 048381 45 IEGFGVARVV--DLGHPEFKKGDLVWGTTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKG 122 (135)
Q Consensus 45 ~~g~~~g~vv--~~~~~~~~~Gd~V~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g 122 (135)
++.+++|+|+ ++++++|++||+|++.+.|++|+.++.+. ++++|++ +++.+++ .+ ++++|||+++. .+++++|
T Consensus 24 ~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~v~~~~-~~~ip~~-l~~~~aa-~~-~~~~ta~~~~~-~~~~~~g 98 (277)
T cd08255 24 PGYSSVGRVVEVGSGVTGFKPGDRVFCFGPHAERVVVPANL-LVPLPDG-LPPERAA-LT-ALAATALNGVR-DAEPRLG 98 (277)
T ss_pred cCcceeEEEEEeCCCCCCCCCCCEEEecCCcceEEEcCHHH-eeECcCC-CCHHHhH-HH-HHHHHHHHHHH-hcCCCCC
Confidence 4457888875 46678899999999999999999999997 9999984 7766654 35 78999999985 6889999
Q ss_pred CEEEEecCCCCCC
Q 048381 123 EYVFVSAASGAVG 135 (135)
Q Consensus 123 ~~VlV~ga~g~vG 135 (135)
++++|+|+ |++|
T Consensus 99 ~~vlI~g~-g~vg 110 (277)
T cd08255 99 ERVAVVGL-GLVG 110 (277)
T ss_pred CEEEEECC-CHHH
Confidence 99999964 6654
No 127
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=98.83 E-value=4.8e-09 Score=91.01 Aligned_cols=119 Identities=16% Similarity=0.122 Sum_probs=87.8
Q ss_pred CCCCcEEEEEEEEeeCHHHHhhhcCCCCCCCcccceEE--EEEec-CCCCCCCCCEEEEc---CCeeeEEEecCCCceEE
Q 048381 14 EGSNTVPVKNLYLSCDPYSRILMTKHEDNGPIEGFGVA--RVVDL-GHPEFKKGDLVWGT---TGWEEYSVIKNPEGLFK 87 (135)
Q Consensus 14 p~~~eVlVkv~a~~ln~~~~~~~~~~~~~~~~~g~~~g--~vv~~-~~~~~~~Gd~V~~~---g~~~~~~~~~~~~~~~~ 87 (135)
-.++.-+..|-|+.||+.+..+..+.-..+.++|+..- .+.+- =.-+.+-|.||.++ -+.++-+.++.+. +..
T Consensus 1442 ~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGRd~~GrRvM~mvpAksLATt~l~~rd~-lWe 1520 (2376)
T KOG1202|consen 1442 TCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGRDASGRRVMGMVPAKSLATTVLASRDF-LWE 1520 (2376)
T ss_pred CCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeeccccCCCcEEEEeeehhhhhhhhhcchhh-hhh
Confidence 46778899999999999443333222222456664321 22231 12345789999987 5677888888886 999
Q ss_pred cCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEecCCCCCC
Q 048381 88 IHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 88 ~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ga~g~vG 135 (135)
+|.+ -+++++ ++.++-|.||||+|..+++.++||++|||+++||||
T Consensus 1521 vP~~-WTleeA-stVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVG 1566 (2376)
T KOG1202|consen 1521 VPSK-WTLEEA-STVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVG 1566 (2376)
T ss_pred CCcc-cchhhc-ccCceEeeeehhhhhhhccccCCcEEEEecCCCchh
Confidence 9985 467664 479999999999999999999999999999999997
No 128
>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function.
Probab=90.60 E-value=0.58 Score=36.40 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=32.4
Q ss_pred CCcccceEEEEEecCCCCCCCCCEEEEcCCeeeEEEecCC
Q 048381 43 GPIEGFGVARVVDLGHPEFKKGDLVWGTTGWEEYSVIKNP 82 (135)
Q Consensus 43 ~~~~g~~~g~vv~~~~~~~~~Gd~V~~~g~~~~~~~~~~~ 82 (135)
..++.-++++|++|+++++.+|.||+++-..++|.++.+.
T Consensus 31 G~vPvWGfA~VveS~~~~i~vGerlyGy~P~ashl~l~p~ 70 (314)
T PF11017_consen 31 GIVPVWGFATVVESRHPGIAVGERLYGYFPMASHLVLEPG 70 (314)
T ss_pred cccccceEEEEEeeCCCCccCccEEEeeccccceeEEecc
Confidence 4567788999999999999999999998666666665543
No 129
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=86.04 E-value=1.2 Score=33.10 Aligned_cols=67 Identities=12% Similarity=0.222 Sum_probs=43.5
Q ss_pred CCCCCCCCEEEEcCCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhc-CCCCCCEEEEecCCCC
Q 048381 58 HPEFKKGDLVWGTTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIR-APKKGEYVFVSAASGA 133 (135)
Q Consensus 58 ~~~~~~Gd~V~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~-~~~~g~~VlV~ga~g~ 133 (135)
.+.+++||+++...+|.+|.. +... +++++++ +++.. +. ...|.. ++..+. .++++++||-.|+++|
T Consensus 64 ~~p~~~g~~~~i~p~~~~~~~-~~~~-~i~i~p~-~afgt--g~---h~tt~~-~l~~l~~~~~~~~~VLDiGcGsG 131 (250)
T PRK00517 64 FHPIRIGDRLWIVPSWEDPPD-PDEI-NIELDPG-MAFGT--GT---HPTTRL-CLEALEKLVLPGKTVLDVGCGSG 131 (250)
T ss_pred CCCEEEcCCEEEECCCcCCCC-CCeE-EEEECCC-CccCC--CC---CHHHHH-HHHHHHhhcCCCCEEEEeCCcHH
Confidence 466789999998899998855 6665 8888874 44432 21 223332 222221 2568999999998665
No 130
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.90 E-value=1.3 Score=34.21 Aligned_cols=15 Identities=27% Similarity=0.674 Sum_probs=14.0
Q ss_pred CCCEEEEecCCCCCC
Q 048381 121 KGEYVFVSAASGAVG 135 (135)
Q Consensus 121 ~g~~VlV~ga~g~vG 135 (135)
.|++|||+||++|+|
T Consensus 37 ~g~~vLITGgg~GlG 51 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLG 51 (300)
T ss_pred cCCEEEEeCCCchHH
Confidence 699999999999987
No 131
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=70.36 E-value=5.4 Score=24.52 Aligned_cols=29 Identities=21% Similarity=0.106 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhcCCCCCCEEEEecCCCCC
Q 048381 106 GMIAWAGFYEIRAPKKGEYVFVSAASGAV 134 (135)
Q Consensus 106 ~~TA~~~l~~~~~~~~g~~VlV~ga~g~v 134 (135)
...++.-+.+..++++||.|++.+.+.|.
T Consensus 53 ~~~~L~~~~~~g~~~~Gd~vl~~~~G~G~ 81 (90)
T PF08541_consen 53 IPINLADALEEGRIKPGDRVLLVGFGAGF 81 (90)
T ss_dssp HHHHHHHHHHTTSSCTTEEEEEEEEETTT
T ss_pred HHHHHHHHHHcCCCCCCCEEEEEEEEhhh
Confidence 33444444566789999999999876553
No 132
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=64.52 E-value=4.7 Score=24.13 Aligned_cols=13 Identities=46% Similarity=0.718 Sum_probs=9.3
Q ss_pred CCCCCCEEEEecC
Q 048381 118 APKKGEYVFVSAA 130 (135)
Q Consensus 118 ~~~~g~~VlV~ga 130 (135)
.+++||+||||.+
T Consensus 37 ~v~~Gd~VLVHaG 49 (68)
T PF01455_consen 37 DVKVGDYVLVHAG 49 (68)
T ss_dssp SB-TT-EEEEETT
T ss_pred CCCCCCEEEEecC
Confidence 4789999999975
No 133
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=64.28 E-value=3.7 Score=25.33 Aligned_cols=19 Identities=26% Similarity=0.181 Sum_probs=11.2
Q ss_pred cCCCCCCEEEEecCCCCCC
Q 048381 117 RAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 117 ~~~~~g~~VlV~ga~g~vG 135 (135)
..++-..+|||.|+|+|.|
T Consensus 34 ~~~~GpK~VLViGaStGyG 52 (78)
T PF12242_consen 34 GKINGPKKVLVIGASTGYG 52 (78)
T ss_dssp ---TS-SEEEEES-SSHHH
T ss_pred CCCCCCceEEEEecCCccc
Confidence 3443338999999999865
No 134
>PLN02780 ketoreductase/ oxidoreductase
Probab=63.77 E-value=3.3 Score=31.90 Aligned_cols=15 Identities=20% Similarity=0.632 Sum_probs=13.7
Q ss_pred CCCEEEEecCCCCCC
Q 048381 121 KGEYVFVSAASGAVG 135 (135)
Q Consensus 121 ~g~~VlV~ga~g~vG 135 (135)
.|.+++|+||+||+|
T Consensus 52 ~g~~~lITGAs~GIG 66 (320)
T PLN02780 52 YGSWALVTGPTDGIG 66 (320)
T ss_pred cCCEEEEeCCCcHHH
Confidence 589999999999986
No 135
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=63.34 E-value=16 Score=22.71 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=21.1
Q ss_pred CCCCCCCEEEEcCC-eeeEEEecCCCceEEcCC
Q 048381 59 PEFKKGDLVWGTTG-WEEYSVIKNPEGLFKIHQ 90 (135)
Q Consensus 59 ~~~~~Gd~V~~~g~-~~~~~~~~~~~~~~~~p~ 90 (135)
+++++||+|...|| +.+...++++...+.+.+
T Consensus 36 ~~L~~Gd~VvT~gGi~G~V~~i~d~~v~vei~~ 68 (84)
T TIGR00739 36 ESLKKGDKVLTIGGIIGTVTKIAENTIVIELND 68 (84)
T ss_pred HhCCCCCEEEECCCeEEEEEEEeCCEEEEEECC
Confidence 46899999998865 666666666542333433
No 136
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=58.68 E-value=6.1 Score=33.32 Aligned_cols=15 Identities=33% Similarity=0.780 Sum_probs=13.8
Q ss_pred CCCEEEEecCCCCCC
Q 048381 121 KGEYVFVSAASGAVG 135 (135)
Q Consensus 121 ~g~~VlV~ga~g~vG 135 (135)
.|.+|||+||+|++|
T Consensus 249 ~gK~vLVTGagGSiG 263 (588)
T COG1086 249 TGKTVLVTGGGGSIG 263 (588)
T ss_pred CCCEEEEeCCCCcHH
Confidence 599999999999987
No 137
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=58.53 E-value=8.3 Score=32.62 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=17.4
Q ss_pred hhcCCCCCCEEEEecCCCCCC
Q 048381 115 EIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 115 ~~~~~~~g~~VlV~ga~g~vG 135 (135)
...+.+.|.++||.||+|++|
T Consensus 73 ~~~~~~~gKvVLVTGATGgIG 93 (576)
T PLN03209 73 KELDTKDEDLAFVAGATGKVG 93 (576)
T ss_pred cccccCCCCEEEEECCCCHHH
Confidence 345677899999999999886
No 138
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=58.31 E-value=13 Score=28.82 Aligned_cols=68 Identities=15% Similarity=0.226 Sum_probs=44.5
Q ss_pred CCCCCCCEEEEcCCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhh-cCCCCCCEEEEecCCCCC
Q 048381 59 PEFKKGDLVWGTTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEI-RAPKKGEYVFVSAASGAV 134 (135)
Q Consensus 59 ~~~~~Gd~V~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~-~~~~~g~~VlV~ga~g~v 134 (135)
...++|++.+....|++|..-.... .++++++ +.+ .-+....|+++ |.-+ ..+++|.+||=.|.+||+
T Consensus 107 ~P~rig~~f~I~Psw~~~~~~~~~~-~i~lDPG-lAF-----GTG~HpTT~lc-L~~Le~~~~~g~~vlDvGcGSGI 175 (300)
T COG2264 107 HPVRIGERFVIVPSWREYPEPSDEL-NIELDPG-LAF-----GTGTHPTTSLC-LEALEKLLKKGKTVLDVGCGSGI 175 (300)
T ss_pred CcEEeeeeEEECCCCccCCCCCCce-EEEEccc-ccc-----CCCCChhHHHH-HHHHHHhhcCCCEEEEecCChhH
Confidence 4467899888888998875443343 7888774 221 24455667644 2222 246799999999988774
No 139
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=56.49 E-value=10 Score=23.26 Aligned_cols=13 Identities=38% Similarity=0.667 Sum_probs=11.2
Q ss_pred CCCCCCEEEEecC
Q 048381 118 APKKGEYVFVSAA 130 (135)
Q Consensus 118 ~~~~g~~VlV~ga 130 (135)
.+++||+||||.+
T Consensus 35 ~~~vGD~VLVH~G 47 (76)
T TIGR00074 35 EVKVGDYVLVHVG 47 (76)
T ss_pred CCCCCCEEEEecC
Confidence 5789999999975
No 140
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=55.09 E-value=25 Score=22.93 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=21.9
Q ss_pred CCCCCCCCEEEEcCC-eeeEEEecCCCceEEcCC
Q 048381 58 HPEFKKGDLVWGTTG-WEEYSVIKNPEGLFKIHQ 90 (135)
Q Consensus 58 ~~~~~~Gd~V~~~g~-~~~~~~~~~~~~~~~~p~ 90 (135)
.+++++||+|...|| +.+.+-++++...+.+.+
T Consensus 50 ~~~Lk~Gd~VvT~gGi~G~Vv~i~~~~v~lei~~ 83 (106)
T PRK05585 50 LSSLAKGDEVVTNGGIIGKVTKVSEDFVIIELND 83 (106)
T ss_pred HHhcCCCCEEEECCCeEEEEEEEeCCEEEEEECC
Confidence 356999999998755 667666665532444544
No 141
>PRK06128 oxidoreductase; Provisional
Probab=55.05 E-value=6.9 Score=29.52 Aligned_cols=15 Identities=20% Similarity=0.603 Sum_probs=13.3
Q ss_pred CCCEEEEecCCCCCC
Q 048381 121 KGEYVFVSAASGAVG 135 (135)
Q Consensus 121 ~g~~VlV~ga~g~vG 135 (135)
.|.++||+||+|++|
T Consensus 54 ~~k~vlITGas~gIG 68 (300)
T PRK06128 54 QGRKALITGADSGIG 68 (300)
T ss_pred CCCEEEEecCCCcHH
Confidence 478999999999986
No 142
>PRK05866 short chain dehydrogenase; Provisional
Probab=54.23 E-value=6.2 Score=29.80 Aligned_cols=15 Identities=27% Similarity=0.671 Sum_probs=13.2
Q ss_pred CCCEEEEecCCCCCC
Q 048381 121 KGEYVFVSAASGAVG 135 (135)
Q Consensus 121 ~g~~VlV~ga~g~vG 135 (135)
.+.+++|+||+|++|
T Consensus 39 ~~k~vlItGasggIG 53 (293)
T PRK05866 39 TGKRILLTGASSGIG 53 (293)
T ss_pred CCCEEEEeCCCcHHH
Confidence 468999999999986
No 143
>PRK07985 oxidoreductase; Provisional
Probab=53.98 E-value=8.3 Score=29.09 Aligned_cols=15 Identities=20% Similarity=0.461 Sum_probs=13.3
Q ss_pred CCCEEEEecCCCCCC
Q 048381 121 KGEYVFVSAASGAVG 135 (135)
Q Consensus 121 ~g~~VlV~ga~g~vG 135 (135)
++.++||+||++++|
T Consensus 48 ~~k~vlITGas~gIG 62 (294)
T PRK07985 48 KDRKALVTGGDSGIG 62 (294)
T ss_pred CCCEEEEECCCCcHH
Confidence 567999999999987
No 144
>PRK10409 hydrogenase assembly chaperone; Provisional
Probab=52.56 E-value=12 Score=23.79 Aligned_cols=13 Identities=31% Similarity=0.769 Sum_probs=10.9
Q ss_pred CCCCCCEEEEecC
Q 048381 118 APKKGEYVFVSAA 130 (135)
Q Consensus 118 ~~~~g~~VlV~ga 130 (135)
..+.||+||||.+
T Consensus 41 ~~~vGDyVLVHaG 53 (90)
T PRK10409 41 QPRVGQWVLVHVG 53 (90)
T ss_pred ccCCCCEEEEecC
Confidence 4688999999974
No 145
>PRK10413 hydrogenase 2 accessory protein HypG; Provisional
Probab=50.27 E-value=13 Score=23.12 Aligned_cols=13 Identities=31% Similarity=0.491 Sum_probs=10.5
Q ss_pred CCCCCCEEEEecC
Q 048381 118 APKKGEYVFVSAA 130 (135)
Q Consensus 118 ~~~~g~~VlV~ga 130 (135)
.++.||+||||.+
T Consensus 42 ~~~vGDyVLVHaG 54 (82)
T PRK10413 42 ADLLGQWVLVHVG 54 (82)
T ss_pred ccccCCEEEEecc
Confidence 3578999999964
No 146
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=48.23 E-value=54 Score=20.72 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=15.7
Q ss_pred CCCCCCEEEEc--CCe------eeEEEecCCC
Q 048381 60 EFKKGDLVWGT--TGW------EEYSVIKNPE 83 (135)
Q Consensus 60 ~~~~Gd~V~~~--g~~------~~~~~~~~~~ 83 (135)
.+++||+|+.. ++. .+|.+++++.
T Consensus 53 ~Vk~GD~Vl~~~y~g~ev~~~~~~y~iv~e~D 84 (91)
T PRK14533 53 DIKVGDKVIFSKYAGTEIKIDDEDYIIIDVND 84 (91)
T ss_pred cccCCCEEEEccCCCeEEEECCEEEEEEEhHh
Confidence 48999999863 221 3566666654
No 147
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=47.78 E-value=8.8 Score=30.93 Aligned_cols=15 Identities=53% Similarity=0.795 Sum_probs=13.2
Q ss_pred CCCEEEEecCCCCCC
Q 048381 121 KGEYVFVSAASGAVG 135 (135)
Q Consensus 121 ~g~~VlV~ga~g~vG 135 (135)
+|.+++|+||+|++|
T Consensus 177 ~gK~VLITGASgGIG 191 (406)
T PRK07424 177 KGKTVAVTGASGTLG 191 (406)
T ss_pred CCCEEEEeCCCCHHH
Confidence 478999999999986
No 148
>PF10844 DUF2577: Protein of unknown function (DUF2577); InterPro: IPR022555 This family of proteins has no known function
Probab=47.70 E-value=25 Score=22.49 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=15.8
Q ss_pred CCCCCCEEEEc--CCeeeEEEec
Q 048381 60 EFKKGDLVWGT--TGWEEYSVIK 80 (135)
Q Consensus 60 ~~~~Gd~V~~~--g~~~~~~~~~ 80 (135)
.+++||+|... .+=+.|++++
T Consensus 76 ~Lk~GD~V~ll~~~~gQ~yiVlD 98 (100)
T PF10844_consen 76 GLKVGDKVLLLRVQGGQKYIVLD 98 (100)
T ss_pred CCcCCCEEEEEEecCCCEEEEEE
Confidence 69999999976 2446777665
No 149
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=46.10 E-value=48 Score=25.14 Aligned_cols=66 Identities=12% Similarity=0.219 Sum_probs=37.1
Q ss_pred CCCCCCCEEEEcCCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHH--HHHhhcCCCCCCEEEEecCCCC
Q 048381 59 PEFKKGDLVWGTTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWA--GFYEIRAPKKGEYVFVSAASGA 133 (135)
Q Consensus 59 ~~~~~Gd~V~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~--~l~~~~~~~~g~~VlV~ga~g~ 133 (135)
+.+++|++.+....|.++-..+... ...++++ ..+ + .+....|..+ .|.+ ..++|++||-.|+++|
T Consensus 104 ~p~~~g~~~~i~p~w~~~~~~~~~~-~i~ldpg-~aF----g-tG~h~tt~l~l~~l~~--~~~~g~~VLDvGcGsG 171 (288)
T TIGR00406 104 HPVQFGKRFWICPSWRDVPSDEDAL-IIMLDPG-LAF----G-TGTHPTTSLCLEWLED--LDLKDKNVIDVGCGSG 171 (288)
T ss_pred CCEEEcCeEEEECCCcCCCCCCCcE-EEEECCC-Ccc----c-CCCCHHHHHHHHHHHh--hcCCCCEEEEeCCChh
Confidence 4467788877777787664323333 5556553 222 1 2233445432 2222 2457899999998765
No 150
>PRK06701 short chain dehydrogenase; Provisional
Probab=44.88 E-value=11 Score=28.44 Aligned_cols=15 Identities=20% Similarity=0.638 Sum_probs=13.1
Q ss_pred CCCEEEEecCCCCCC
Q 048381 121 KGEYVFVSAASGAVG 135 (135)
Q Consensus 121 ~g~~VlV~ga~g~vG 135 (135)
++.++||+||+|++|
T Consensus 45 ~~k~iLItGasggIG 59 (290)
T PRK06701 45 KGKVALITGGDSGIG 59 (290)
T ss_pred CCCEEEEeCCCcHHH
Confidence 478999999999876
No 151
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=43.98 E-value=31 Score=25.13 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEecCCCC
Q 048381 105 PGMIAWAGFYEIRAPKKGEYVFVSAASGA 133 (135)
Q Consensus 105 ~~~TA~~~l~~~~~~~~g~~VlV~ga~g~ 133 (135)
+.+.| .+.+...+++|++||-.|+++|
T Consensus 58 P~~~a--~~l~~L~l~pg~~VLeIGtGsG 84 (209)
T PF01135_consen 58 PSMVA--RMLEALDLKPGDRVLEIGTGSG 84 (209)
T ss_dssp HHHHH--HHHHHTTC-TT-EEEEES-TTS
T ss_pred HHHHH--HHHHHHhcCCCCEEEEecCCCc
Confidence 44444 3345667999999999998765
No 152
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=43.30 E-value=19 Score=27.83 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=36.5
Q ss_pred CCCCCCCEEEEcCCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHH--HHHhhcCCCCCCEEEEecCCCCC
Q 048381 59 PEFKKGDLVWGTTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWA--GFYEIRAPKKGEYVFVSAASGAV 134 (135)
Q Consensus 59 ~~~~~Gd~V~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~--~l~~~~~~~~g~~VlV~ga~g~v 134 (135)
+.+++|++.+....|.+|-.-+.+. .+.++++ +.+ .-+....|..+ .|.+ ..++|++||=.|.+||+
T Consensus 106 ~P~~vg~~~~I~P~w~~~~~~~~~~-~I~idPg-~AF-----GTG~H~TT~lcl~~l~~--~~~~g~~vLDvG~GSGI 174 (295)
T PF06325_consen 106 KPIRVGDRLVIVPSWEEYPEPPDEI-VIEIDPG-MAF-----GTGHHPTTRLCLELLEK--YVKPGKRVLDVGCGSGI 174 (295)
T ss_dssp --EEECTTEEEEETT----SSTTSE-EEEESTT-SSS------SSHCHHHHHHHHHHHH--HSSTTSEEEEES-TTSH
T ss_pred ccEEECCcEEEECCCcccCCCCCcE-EEEECCC-Ccc-----cCCCCHHHHHHHHHHHH--hccCCCEEEEeCCcHHH
Confidence 4567899888888888883323343 6777764 222 13344556533 2322 26789999988887764
No 153
>PLN02572 UDP-sulfoquinovose synthase
Probab=43.12 E-value=13 Score=30.14 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=13.7
Q ss_pred CCCCEEEEecCCCCCC
Q 048381 120 KKGEYVFVSAASGAVG 135 (135)
Q Consensus 120 ~~g~~VlV~ga~g~vG 135 (135)
.++.+|||+||+|.+|
T Consensus 45 ~~~k~VLVTGatGfIG 60 (442)
T PLN02572 45 SKKKKVMVIGGDGYCG 60 (442)
T ss_pred ccCCEEEEECCCcHHH
Confidence 4578999999999887
No 154
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=43.02 E-value=91 Score=20.15 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=15.5
Q ss_pred CCCCCCEEEEc---CC-----eeeEEEecCCC
Q 048381 60 EFKKGDLVWGT---TG-----WEEYSVIKNPE 83 (135)
Q Consensus 60 ~~~~Gd~V~~~---g~-----~~~~~~~~~~~ 83 (135)
.+++||+|+.. |. =.+|.+++++.
T Consensus 62 ~Vk~GD~Vl~~~y~Gtevk~dg~ey~i~~e~D 93 (100)
T PTZ00414 62 TVKVGDTVLLPEFGGSSVKVEGEEFFLYNEDS 93 (100)
T ss_pred eecCCCEEEEcCCCCcEEEECCEEEEEEEhHH
Confidence 48999999853 11 14566666654
No 155
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=42.24 E-value=13 Score=29.72 Aligned_cols=15 Identities=27% Similarity=0.589 Sum_probs=13.4
Q ss_pred CCCEEEEecCCCCCC
Q 048381 121 KGEYVFVSAASGAVG 135 (135)
Q Consensus 121 ~g~~VlV~ga~g~vG 135 (135)
+|.++||+||+|++|
T Consensus 209 ~g~~vlItGasggIG 223 (450)
T PRK08261 209 AGKVALVTGAARGIG 223 (450)
T ss_pred CCCEEEEecCCCHHH
Confidence 588999999999886
No 156
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.61 E-value=11 Score=30.13 Aligned_cols=21 Identities=14% Similarity=0.407 Sum_probs=17.4
Q ss_pred hhcCCCCCCEEE----EecCCCCCC
Q 048381 115 EIRAPKKGEYVF----VSAASGAVG 135 (135)
Q Consensus 115 ~~~~~~~g~~Vl----V~ga~g~vG 135 (135)
.+.++++|+.+| |+||+|++|
T Consensus 27 ~l~~~~~~~~~~~~~~l~~~~~g~~ 51 (450)
T PRK08261 27 PLRRYRPGQPLLDGPVLVGGAGRLA 51 (450)
T ss_pred cccCCCCCCCCCCCceEEccCchhH
Confidence 457889999999 999888775
No 157
>PRK08324 short chain dehydrogenase; Validated
Probab=35.50 E-value=17 Score=31.04 Aligned_cols=16 Identities=31% Similarity=0.667 Sum_probs=14.0
Q ss_pred CCCCEEEEecCCCCCC
Q 048381 120 KKGEYVFVSAASGAVG 135 (135)
Q Consensus 120 ~~g~~VlV~ga~g~vG 135 (135)
.+|+++||+||+|++|
T Consensus 420 l~gk~vLVTGasggIG 435 (681)
T PRK08324 420 LAGKVALVTGAAGGIG 435 (681)
T ss_pred CCCCEEEEecCCCHHH
Confidence 3689999999999886
No 158
>PRK06484 short chain dehydrogenase; Validated
Probab=34.14 E-value=20 Score=29.11 Aligned_cols=15 Identities=13% Similarity=0.330 Sum_probs=13.2
Q ss_pred CCCEEEEecCCCCCC
Q 048381 121 KGEYVFVSAASGAVG 135 (135)
Q Consensus 121 ~g~~VlV~ga~g~vG 135 (135)
.|.++||+||++++|
T Consensus 268 ~~k~~lItGas~gIG 282 (520)
T PRK06484 268 SPRVVAITGGARGIG 282 (520)
T ss_pred CCCEEEEECCCcHHH
Confidence 578999999999886
No 159
>COG1329 Transcriptional regulators, similar to M. xanthus CarD [Transcription]
Probab=33.12 E-value=80 Score=22.38 Aligned_cols=32 Identities=28% Similarity=0.196 Sum_probs=20.3
Q ss_pred CCCCCCEEEEc----------------CCeeeEEEecC--CCceEEcCCC
Q 048381 60 EFKKGDLVWGT----------------TGWEEYSVIKN--PEGLFKIHQT 91 (135)
Q Consensus 60 ~~~~Gd~V~~~----------------g~~~~~~~~~~--~~~~~~~p~~ 91 (135)
.|++||+|+-. |.=.+|.+++- +...+++|-.
T Consensus 4 ~Fk~Gd~VVYP~HGvG~I~~Ieeke~~Ge~~~yyVI~f~~~dm~v~VP~~ 53 (166)
T COG1329 4 AFKIGDHVVYPAHGVGIIQAIEEKEIAGETLEYYVIDFPQSDMTVMVPVA 53 (166)
T ss_pred cccCCCEEEecCCCceeeehhhhHhhcCceeEEEEEEEcCCCcEEEeecc
Confidence 58888888732 33456877763 2237788753
No 160
>PLN02686 cinnamoyl-CoA reductase
Probab=32.82 E-value=19 Score=28.24 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=14.1
Q ss_pred CCCCCEEEEecCCCCCC
Q 048381 119 PKKGEYVFVSAASGAVG 135 (135)
Q Consensus 119 ~~~g~~VlV~ga~g~vG 135 (135)
...+.+|||+||+|.+|
T Consensus 50 ~~~~k~VLVTGatGfIG 66 (367)
T PLN02686 50 DAEARLVCVTGGVSFLG 66 (367)
T ss_pred CCCCCEEEEECCchHHH
Confidence 45688999999999775
No 161
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=32.70 E-value=55 Score=25.68 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=19.6
Q ss_pred HHHHHHhhcCCCCCCEEEEecCCCCC
Q 048381 109 AWAGFYEIRAPKKGEYVFVSAASGAV 134 (135)
Q Consensus 109 A~~~l~~~~~~~~g~~VlV~ga~g~v 134 (135)
|..-+.+.+++++||.+|+.+.++|.
T Consensus 288 aL~~~~~~g~ik~Gd~ill~~fG~Gl 313 (323)
T COG0332 288 ALDEALREGRIKPGDLVLLEAFGGGL 313 (323)
T ss_pred HHHHHhhhCCCCCCCEEEEEeecCcc
Confidence 34444456889999999999887764
No 162
>PF13403 Hint_2: Hint domain
Probab=31.51 E-value=67 Score=21.99 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=15.5
Q ss_pred CCCCCCCCCEEEEc-CCeeeE
Q 048381 57 GHPEFKKGDLVWGT-TGWEEY 76 (135)
Q Consensus 57 ~~~~~~~Gd~V~~~-g~~~~~ 76 (135)
.+.++++||+|... +++++-
T Consensus 17 ~Ve~L~~GD~V~T~dgg~~~V 37 (147)
T PF13403_consen 17 PVEDLRPGDRVLTRDGGFQPV 37 (147)
T ss_pred EeeccCCCCEEEecCCCEEEE
Confidence 36789999999987 666543
No 163
>PLN02206 UDP-glucuronate decarboxylase
Probab=31.21 E-value=21 Score=28.96 Aligned_cols=16 Identities=44% Similarity=0.681 Sum_probs=13.3
Q ss_pred CCCCEEEEecCCCCCC
Q 048381 120 KKGEYVFVSAASGAVG 135 (135)
Q Consensus 120 ~~g~~VlV~ga~g~vG 135 (135)
+++.+|||+||+|-+|
T Consensus 117 ~~~~kILVTGatGfIG 132 (442)
T PLN02206 117 RKGLRVVVTGGAGFVG 132 (442)
T ss_pred cCCCEEEEECcccHHH
Confidence 4678999999998765
No 164
>PRK05855 short chain dehydrogenase; Validated
Probab=29.91 E-value=25 Score=28.70 Aligned_cols=15 Identities=33% Similarity=0.671 Sum_probs=13.2
Q ss_pred CCCEEEEecCCCCCC
Q 048381 121 KGEYVFVSAASGAVG 135 (135)
Q Consensus 121 ~g~~VlV~ga~g~vG 135 (135)
.+.++||+||+|++|
T Consensus 314 ~~~~~lv~G~s~giG 328 (582)
T PRK05855 314 SGKLVVVTGAGSGIG 328 (582)
T ss_pred CCCEEEEECCcCHHH
Confidence 568999999999986
No 165
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=29.40 E-value=39 Score=22.23 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=16.6
Q ss_pred CCCCCCCEEEEcCC-eeeEEEecCC
Q 048381 59 PEFKKGDLVWGTTG-WEEYSVIKNP 82 (135)
Q Consensus 59 ~~~~~Gd~V~~~g~-~~~~~~~~~~ 82 (135)
+++++||+|+..|| +.+-..++.+
T Consensus 37 ~~Lk~GD~VvT~gGi~G~V~~I~d~ 61 (109)
T PRK05886 37 ESLQPGDRVHTTSGLQATIVGITDD 61 (109)
T ss_pred HhcCCCCEEEECCCeEEEEEEEeCC
Confidence 56999999998866 4444444443
No 166
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=29.33 E-value=44 Score=20.59 Aligned_cols=10 Identities=60% Similarity=1.142 Sum_probs=8.9
Q ss_pred CCCCCCEEEE
Q 048381 60 EFKKGDLVWG 69 (135)
Q Consensus 60 ~~~~Gd~V~~ 69 (135)
+|++||.|++
T Consensus 2 ~f~~GdlVwa 11 (83)
T cd05834 2 QFKAGDLVFA 11 (83)
T ss_pred CCCCCCEEEE
Confidence 5899999997
No 167
>PRK07201 short chain dehydrogenase; Provisional
Probab=29.28 E-value=25 Score=29.49 Aligned_cols=14 Identities=36% Similarity=0.771 Sum_probs=12.6
Q ss_pred CCEEEEecCCCCCC
Q 048381 122 GEYVFVSAASGAVG 135 (135)
Q Consensus 122 g~~VlV~ga~g~vG 135 (135)
|.++||+||+|++|
T Consensus 371 ~k~vlItGas~giG 384 (657)
T PRK07201 371 GKVVLITGASSGIG 384 (657)
T ss_pred CCEEEEeCCCCHHH
Confidence 67999999999886
No 168
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=29.27 E-value=26 Score=30.08 Aligned_cols=15 Identities=27% Similarity=0.640 Sum_probs=13.3
Q ss_pred CCCEEEEecCCCCCC
Q 048381 121 KGEYVFVSAASGAVG 135 (135)
Q Consensus 121 ~g~~VlV~ga~g~vG 135 (135)
.+.++||+||+|++|
T Consensus 413 ~gkvvLVTGasggIG 427 (676)
T TIGR02632 413 ARRVAFVTGGAGGIG 427 (676)
T ss_pred CCCEEEEeCCCcHHH
Confidence 478999999999986
No 169
>PF14031 D-ser_dehydrat: Putative serine dehydratase domain; PDB: 3LLX_A 3ANV_A 3AWO_A 3AWN_A 3ANU_A 3GWQ_A.
Probab=29.17 E-value=1.1e+02 Score=19.18 Aligned_cols=31 Identities=23% Similarity=0.108 Sum_probs=15.4
Q ss_pred EEEEEecC-CCCCCCCCEEEEc--------CCeeeEEEec
Q 048381 50 VARVVDLG-HPEFKKGDLVWGT--------TGWEEYSVIK 80 (135)
Q Consensus 50 ~g~vv~~~-~~~~~~Gd~V~~~--------g~~~~~~~~~ 80 (135)
-|.+...+ ...+++||+|... .-|.+|.+++
T Consensus 55 Hg~l~~~~~~~~~~vGd~v~iiP~H~C~t~nl~~~~~vvd 94 (94)
T PF14031_consen 55 HGILRLPDGADRLKVGDKVEIIPNHCCPTVNLHDEYYVVD 94 (94)
T ss_dssp -EEEE-STTGCGT-TT-EEEEEESSHHHHHTT-SEEEEE-
T ss_pred eeEEECCCCCCCCCCCCEEEEECCccchhhhhcCEEEEEC
Confidence 34444333 3459999999864 4566666553
No 170
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=29.04 E-value=29 Score=27.49 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=14.6
Q ss_pred CCCCCCEEEEecCCCCCC
Q 048381 118 APKKGEYVFVSAASGAVG 135 (135)
Q Consensus 118 ~~~~g~~VlV~ga~g~vG 135 (135)
+-..+.+|||+||+|.+|
T Consensus 56 ~~~~~~kVLVtGatG~IG 73 (390)
T PLN02657 56 KEPKDVTVLVVGATGYIG 73 (390)
T ss_pred cCCCCCEEEEECCCcHHH
Confidence 445688999999999876
No 171
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=28.63 E-value=43 Score=27.16 Aligned_cols=30 Identities=20% Similarity=0.163 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhhcC-CCCCCEEEEecCCCCCC
Q 048381 105 PGMIAWAGFYEIRA-PKKGEYVFVSAASGAVG 135 (135)
Q Consensus 105 ~~~TA~~~l~~~~~-~~~g~~VlV~ga~g~vG 135 (135)
.+.+.|.++.+..+ ..+|++|+|.|+ |.+|
T Consensus 184 ~g~s~~~~i~r~t~~~l~GktVvViG~-G~IG 214 (413)
T cd00401 184 CRESLIDGIKRATDVMIAGKVAVVAGY-GDVG 214 (413)
T ss_pred hchhhHHHHHHhcCCCCCCCEEEEECC-CHHH
Confidence 35567777776544 468999999997 5544
No 172
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=28.33 E-value=39 Score=22.35 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=16.6
Q ss_pred CCCCCCCEEEEcCC-eeeEEEecC
Q 048381 59 PEFKKGDLVWGTTG-WEEYSVIKN 81 (135)
Q Consensus 59 ~~~~~Gd~V~~~g~-~~~~~~~~~ 81 (135)
+++++||+|+..|| +.+-..++.
T Consensus 35 ~sLk~GD~VvT~GGi~G~V~~I~~ 58 (113)
T PRK06531 35 NAIQKGDEVVTIGGLYGTVDEVDT 58 (113)
T ss_pred HhcCCCCEEEECCCcEEEEEEEec
Confidence 46999999998866 455544554
No 173
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=28.27 E-value=54 Score=26.74 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhhcCCC-CCCEEEEecCCCCCC
Q 048381 105 PGMIAWAGFYEIRAPK-KGEYVFVSAASGAVG 135 (135)
Q Consensus 105 ~~~TA~~~l~~~~~~~-~g~~VlV~ga~g~vG 135 (135)
...++|.++.+..++. .|++|+|.|. |.+|
T Consensus 194 t~~s~~~ai~rat~~~l~Gk~VlViG~-G~IG 224 (425)
T PRK05476 194 TGESLLDGIKRATNVLIAGKVVVVAGY-GDVG 224 (425)
T ss_pred HHhhhHHHHHHhccCCCCCCEEEEECC-CHHH
Confidence 3556788887664544 8999999997 5554
No 174
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=27.86 E-value=1.1e+02 Score=23.22 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=15.4
Q ss_pred HHHHHHHHHhhcCCCC-CCEEEEecC
Q 048381 106 GMIAWAGFYEIRAPKK-GEYVFVSAA 130 (135)
Q Consensus 106 ~~TA~~~l~~~~~~~~-g~~VlV~ga 130 (135)
++|-+.++.+...-+. .+.++||++
T Consensus 121 GITP~lSml~~~~~~~~~~v~l~h~~ 146 (266)
T COG1018 121 GITPFLSMLRTLLDRGPADVVLVHAA 146 (266)
T ss_pred cHhHHHHHHHHHHHhCCCCEEEEEec
Confidence 5555666555422222 889999986
No 175
>PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=27.85 E-value=86 Score=24.74 Aligned_cols=19 Identities=11% Similarity=0.139 Sum_probs=14.1
Q ss_pred hhcCCCCCCEEEEecCCCC
Q 048381 115 EIRAPKKGEYVFVSAASGA 133 (135)
Q Consensus 115 ~~~~~~~g~~VlV~ga~g~ 133 (135)
+..++++||.|+..++.|+
T Consensus 348 ~~g~~~~Gd~vl~~~~~s~ 366 (378)
T PRK06816 348 NSGRLKPGQKILCFVPESG 366 (378)
T ss_pred HcCCCCCCCEEEEEEeccc
Confidence 4468999999999954443
No 176
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=27.83 E-value=33 Score=27.73 Aligned_cols=19 Identities=26% Similarity=0.219 Sum_probs=14.8
Q ss_pred cCC-CCCCEEEEecCCCCCC
Q 048381 117 RAP-KKGEYVFVSAASGAVG 135 (135)
Q Consensus 117 ~~~-~~g~~VlV~ga~g~vG 135 (135)
+.+ ..|.++||+|+++|+|
T Consensus 35 ~~~~~ggK~aLVTGaSsGIG 54 (398)
T PRK13656 35 GPIANGPKKVLVIGASSGYG 54 (398)
T ss_pred CCcCCCCCEEEEECCCchHh
Confidence 344 4568999999999876
No 177
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=27.83 E-value=1.5e+02 Score=18.76 Aligned_cols=11 Identities=36% Similarity=0.302 Sum_probs=9.3
Q ss_pred CCCCCCEEEEc
Q 048381 60 EFKKGDLVWGT 70 (135)
Q Consensus 60 ~~~~Gd~V~~~ 70 (135)
.+++||+|+..
T Consensus 58 ~vk~GD~Vlf~ 68 (95)
T PRK00364 58 DVKVGDKVLFG 68 (95)
T ss_pred ccCCCCEEEEc
Confidence 49999999964
No 178
>PRK14982 acyl-ACP reductase; Provisional
Probab=26.70 E-value=27 Score=27.57 Aligned_cols=15 Identities=33% Similarity=0.468 Sum_probs=12.8
Q ss_pred CCCEEEEecCCCCCC
Q 048381 121 KGEYVFVSAASGAVG 135 (135)
Q Consensus 121 ~g~~VlV~ga~g~vG 135 (135)
.+.+|+|.||+|.+|
T Consensus 154 ~~k~VLVtGAtG~IG 168 (340)
T PRK14982 154 SKATVAVVGATGDIG 168 (340)
T ss_pred CCCEEEEEccChHHH
Confidence 678999999988765
No 179
>KOG1816 consensus Ubiquitin fusion-degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=26.44 E-value=3.2e+02 Score=21.37 Aligned_cols=59 Identities=12% Similarity=0.210 Sum_probs=32.3
Q ss_pred CCCCCCEEEEcCCeeeEEEecCCCceEEcCCCCCChhhhhhccChHHHHHHHHHHhhcCCCCCCEEEEe
Q 048381 60 EFKKGDLVWGTTGWEEYSVIKNPEGLFKIHQTELPLSYYSGILGMPGMIAWAGFYEIRAPKKGEYVFVS 128 (135)
Q Consensus 60 ~~~~Gd~V~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~TA~~~l~~~~~~~~g~~VlV~ 128 (135)
.+..||.|-. +++.++-.. .+|+-+...++.+ +.-+=..--.+|++.+.+..||.++|.
T Consensus 97 ~le~gdlv~i-----~~v~lpkgt-yvKLqP~s~dFLD----ItNpKAvLE~~LRn~acLT~gDvi~i~ 155 (308)
T KOG1816|consen 97 LLEEGDLVRI-----RSVTLPKGT-YVKLQPHSVDFLD----ITNPKAVLENALRNYACLTTGDVILIN 155 (308)
T ss_pred cCCCCCeEEE-----EEeeccccc-eeeeccCCCCccc----cCChHHHHHHHHhhccccccCCEEEEe
Confidence 3677888764 345555444 4444332233222 111111223456788889999999885
No 180
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=26.05 E-value=58 Score=19.46 Aligned_cols=24 Identities=17% Similarity=0.468 Sum_probs=14.4
Q ss_pred HHHHHHhhcCCCCCCEEEEecCC-CC
Q 048381 109 AWAGFYEIRAPKKGEYVFVSAAS-GA 133 (135)
Q Consensus 109 A~~~l~~~~~~~~g~~VlV~ga~-g~ 133 (135)
-|.+|... .-+.++.+||||++ .|
T Consensus 20 i~~~Ld~~-~~~~~~~~lvhGga~~G 44 (71)
T PF10686_consen 20 IWAALDKV-HARHPDMVLVHGGAPKG 44 (71)
T ss_pred HHHHHHHH-HHhCCCEEEEECCCCCC
Confidence 44555433 22337788999987 44
No 181
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=25.82 E-value=76 Score=14.44 Aligned_cols=12 Identities=33% Similarity=0.219 Sum_probs=9.7
Q ss_pred CCCCCEEEEecC
Q 048381 119 PKKGEYVFVSAA 130 (135)
Q Consensus 119 ~~~g~~VlV~ga 130 (135)
+++|+.|.|.++
T Consensus 2 ~~~G~~V~I~~G 13 (28)
T smart00739 2 FEVGDTVRVIAG 13 (28)
T ss_pred CCCCCEEEEeEC
Confidence 578999999875
No 182
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=25.33 E-value=35 Score=26.73 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=19.1
Q ss_pred CCCCCCEEEEcCCeeeEEEecCC
Q 048381 60 EFKKGDLVWGTTGWEEYSVIKNP 82 (135)
Q Consensus 60 ~~~~Gd~V~~~g~~~~~~~~~~~ 82 (135)
++|+||+|...|.|.|+..-+.+
T Consensus 253 sLKpGDKvtisGPfGEfFaKdtd 275 (410)
T COG2871 253 SLKPGDKVTISGPFGEFFAKDTD 275 (410)
T ss_pred eecCCCeEEEeccchhhhhccCC
Confidence 48999999999999998765544
No 183
>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Probab=25.29 E-value=1.2e+02 Score=18.28 Aligned_cols=20 Identities=35% Similarity=0.343 Sum_probs=16.3
Q ss_pred CCCCCCCCEEEEcCCeeeEE
Q 048381 58 HPEFKKGDLVWGTTGWEEYS 77 (135)
Q Consensus 58 ~~~~~~Gd~V~~~g~~~~~~ 77 (135)
..++++||+|...|.-.||.
T Consensus 42 ~~~~~~Gd~V~vtG~v~ey~ 61 (78)
T cd04486 42 GADVAVGDLVRVTGTVTEYY 61 (78)
T ss_pred CCCCCCCCEEEEEEEEEeeC
Confidence 67799999999887777765
No 184
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=24.85 E-value=54 Score=21.08 Aligned_cols=31 Identities=19% Similarity=0.184 Sum_probs=20.7
Q ss_pred CCCCCCCEEEEcCC-eeeEEEecCCCceEEcC
Q 048381 59 PEFKKGDLVWGTTG-WEEYSVIKNPEGLFKIH 89 (135)
Q Consensus 59 ~~~~~Gd~V~~~g~-~~~~~~~~~~~~~~~~p 89 (135)
++++.||+|+..|| +.+-..+.++...+.+.
T Consensus 42 ~sL~kGD~VvT~gGi~G~V~~v~d~~v~I~l~ 73 (97)
T COG1862 42 NSLKKGDEVVTIGGIVGTVTKVGDDTVEIELG 73 (97)
T ss_pred HhccCCCEEEEcCCeEEEEEEEecCcEEEEEC
Confidence 56899999999876 45555566653234443
No 185
>cd04493 BRCA2DBD_OB1 BRCA2DBD_OB1: A subfamily of OB folds corresponding to the first OB fold (OB1) of the 800-amino acid C-terminal ssDNA binding domain (DBD) of BRCA2 (breast cancer susceptibility gene 2) protein, called BRCA2DBD. BRCA2 participates in homologous recombination-mediated repair of double-strand DNA breaks. It stimulates the displacement of Replication protein A (RPA), the most abundant eukaryotic ssDNA binding protein. It also facilitates filament formation. Mutations that map throughout the BRCA2 protein are associated with breast cancer susceptibility. BRCA2 is a large nuclear protein and its most conserved region is the C-terminal BRCA2DBD. BRCA2DBD binds ssDNA in vitro, and is composed of five structural domains, three of which are OB folds (OB1, OB2, and OB3). BRCA2DBD OB2 and OB3 are arranged in tandem, and their mode of binding can be considered qualitatively similar to two OB folds of RPA1, DBD-A and DBD-B (the major DBDs of RPA). BRCA2DBD OB1 binds DNA weakly.
Probab=24.62 E-value=81 Score=20.41 Aligned_cols=18 Identities=11% Similarity=0.106 Sum_probs=15.4
Q ss_pred HhhcCCCCCCEEEEecCC
Q 048381 114 YEIRAPKKGEYVFVSAAS 131 (135)
Q Consensus 114 ~~~~~~~~g~~VlV~ga~ 131 (135)
.+.++++-|+++.|+||.
T Consensus 46 l~~gkl~vGqKL~i~GA~ 63 (100)
T cd04493 46 VRKGKLRVGQKLRICGAE 63 (100)
T ss_pred HHcCCeecccEEEEECce
Confidence 467889999999999984
No 186
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.56 E-value=48 Score=25.76 Aligned_cols=17 Identities=24% Similarity=0.511 Sum_probs=14.3
Q ss_pred CCCCCEEEEecCCCCCC
Q 048381 119 PKKGEYVFVSAASGAVG 135 (135)
Q Consensus 119 ~~~g~~VlV~ga~g~vG 135 (135)
--.|.+++|+||++|+|
T Consensus 32 ~~~~~~~vVTGansGIG 48 (314)
T KOG1208|consen 32 DLSGKVALVTGATSGIG 48 (314)
T ss_pred cCCCcEEEEECCCCchH
Confidence 34668999999999987
No 187
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional
Probab=24.51 E-value=95 Score=23.75 Aligned_cols=20 Identities=10% Similarity=0.223 Sum_probs=15.2
Q ss_pred hhcCCCCCCEEEEecCCCCC
Q 048381 115 EIRAPKKGEYVFVSAASGAV 134 (135)
Q Consensus 115 ~~~~~~~g~~VlV~ga~g~v 134 (135)
+..++++||.|++.+.+.|+
T Consensus 297 ~~g~~~~Gd~vll~~~G~G~ 316 (326)
T CHL00203 297 QNNKIQPGQIIVLSGFGAGL 316 (326)
T ss_pred HhCCCCCCCEEEEEEEchhh
Confidence 44578999999999865553
No 188
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=24.43 E-value=97 Score=23.64 Aligned_cols=21 Identities=10% Similarity=0.313 Sum_probs=15.7
Q ss_pred HhhcCCCCCCEEEEecCCCCC
Q 048381 114 YEIRAPKKGEYVFVSAASGAV 134 (135)
Q Consensus 114 ~~~~~~~~g~~VlV~ga~g~v 134 (135)
.+..++++||+|++.+.++|+
T Consensus 300 ~~~g~~~~Gd~vll~~~G~G~ 320 (329)
T PRK07204 300 IKQKKVQRGNKILLLGTSAGL 320 (329)
T ss_pred HHcCCCCCCCEEEEEEEchhh
Confidence 344678999999998876553
No 189
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=24.33 E-value=1.9e+02 Score=18.12 Aligned_cols=12 Identities=33% Similarity=0.177 Sum_probs=9.6
Q ss_pred CCCCCCCEEEEc
Q 048381 59 PEFKKGDLVWGT 70 (135)
Q Consensus 59 ~~~~~Gd~V~~~ 70 (135)
..+++||+|+..
T Consensus 56 ~~vk~GD~Vl~~ 67 (93)
T cd00320 56 LSVKVGDKVLFP 67 (93)
T ss_pred ccccCCCEEEEC
Confidence 359999999864
No 190
>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]
Probab=24.04 E-value=51 Score=25.93 Aligned_cols=20 Identities=35% Similarity=0.403 Sum_probs=15.2
Q ss_pred hcCCCCC-CEEEEecCCCCCC
Q 048381 116 IRAPKKG-EYVFVSAASGAVG 135 (135)
Q Consensus 116 ~~~~~~g-~~VlV~ga~g~vG 135 (135)
.+.+++| .+|||.|||+|.|
T Consensus 34 ~gp~~ngPKkVLviGaSsGyG 54 (398)
T COG3007 34 AGPIKNGPKKVLVIGASSGYG 54 (398)
T ss_pred cCCccCCCceEEEEecCCccc
Confidence 3445544 6899999999986
No 191
>PF02832 Flavi_glycop_C: Flavivirus glycoprotein, immunoglobulin-like domain; InterPro: IPR000336 Flaviruses are small, enveloped RNA viruses that use arthropods such as mosquitoes for transmission to their vertebrate hosts, and include Yellow fever virus, West Nile virus, Tick-borne encephalitis virus, Japanese encephalitis virus, and Dengue virus 2 []. Flaviviruses consist of three structural proteins: the core nucleocapsid protein C (IPR001122 from INTERPRO), and the envelope glycoproteins M (IPR000069 from INTERPRO) and E. Glycoprotein E is a class II viral fusion protein that mediates both receptor binding and fusion. Class II viral fusion proteins are found in flaviviruses and alphaviruses, and are structurally distinct from class I fusion proteins from influenza-type viruses and retroviruses. Glycoprotein E is comprised of three domains: domain I (dimerisation domain) is an 8-stranded beta barrel, domain II (central domain) is an elongated domain composed of twelve beta strands and two alpha helices, and domain III (immunoglobulin-like domain) is an IgC-like module with ten beta strands. This entry represents the Ig-like domain III, which contains a putative receptor-binding loop [].; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2R29_A 1PJW_A 4FFY_A 3IRC_A 4ALA_C 3G7T_A 2I69_A 1ZTX_E 2P5P_A 1URZ_F ....
Probab=23.71 E-value=1.2e+02 Score=19.53 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=18.7
Q ss_pred CeeeeeeecccCCCCCCcEEEEEEEEeeC
Q 048381 1 MYLTSATVSLKVAEGSNTVPVKNLYLSCD 29 (135)
Q Consensus 1 ~~~~~~~~~~~~~p~~~eVlVkv~a~~ln 29 (135)
|+.+.+|.. -+-|-|.+|+.|.|-+
T Consensus 9 F~~~K~P~d----TgHgTVvmev~y~G~d 33 (97)
T PF02832_consen 9 FSFKKTPTD----TGHGTVVMEVKYTGSD 33 (97)
T ss_dssp EEEEEEEEE-----TTSSEEEEEEEESSS
T ss_pred eEEEeCccc----CCCCeEEEEEEEccCC
Confidence 556666666 4778999999999864
No 192
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=23.61 E-value=40 Score=28.76 Aligned_cols=16 Identities=25% Similarity=0.519 Sum_probs=13.5
Q ss_pred CCCCEEEEecCCCCCC
Q 048381 120 KKGEYVFVSAASGAVG 135 (135)
Q Consensus 120 ~~g~~VlV~ga~g~vG 135 (135)
+++.+|||+||+|-+|
T Consensus 313 ~~~~~VLVTGatGFIG 328 (660)
T PRK08125 313 KRRTRVLILGVNGFIG 328 (660)
T ss_pred hcCCEEEEECCCchHH
Confidence 4688999999998765
No 193
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=23.00 E-value=75 Score=23.61 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=18.3
Q ss_pred HHHHhhcCCCCCCEEEEecCCCCC
Q 048381 111 AGFYEIRAPKKGEYVFVSAASGAV 134 (135)
Q Consensus 111 ~~l~~~~~~~~g~~VlV~ga~g~v 134 (135)
.+|.+ ..+++|+.||=.||++|+
T Consensus 67 ~Gl~~-~pi~~g~~VLYLGAasGT 89 (231)
T COG1889 67 KGLKN-FPIKEGSKVLYLGAASGT 89 (231)
T ss_pred cCccc-CCcCCCCEEEEeeccCCC
Confidence 44543 468999999999999985
No 194
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=22.56 E-value=42 Score=27.20 Aligned_cols=16 Identities=31% Similarity=0.517 Sum_probs=13.2
Q ss_pred CCCCEEEEecCCCCCC
Q 048381 120 KKGEYVFVSAASGAVG 135 (135)
Q Consensus 120 ~~g~~VlV~ga~g~vG 135 (135)
++..+|||+||+|-+|
T Consensus 118 ~~~mkILVTGatGFIG 133 (436)
T PLN02166 118 RKRLRIVVTGGAGFVG 133 (436)
T ss_pred cCCCEEEEECCccHHH
Confidence 4678999999998765
No 195
>cd05836 N_Pac_NP60 The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha. In a variety of cell lines, NP60 has been shown to localize to the nucleus. In addition to the PWWP domain, NP60 also contains an AT-hook and a C-terminal NAD-binding domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=22.19 E-value=64 Score=20.00 Aligned_cols=10 Identities=60% Similarity=1.218 Sum_probs=8.3
Q ss_pred CCCCCEEEEc
Q 048381 61 FKKGDLVWGT 70 (135)
Q Consensus 61 ~~~Gd~V~~~ 70 (135)
|++||.|++-
T Consensus 1 f~~GDlVwaK 10 (86)
T cd05836 1 LKLGDLVWAK 10 (86)
T ss_pred CCCCCEEEEe
Confidence 6899999973
No 196
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=22.17 E-value=94 Score=22.87 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEecCCCC
Q 048381 105 PGMIAWAGFYEIRAPKKGEYVFVSAASGA 133 (135)
Q Consensus 105 ~~~TA~~~l~~~~~~~~g~~VlV~ga~g~ 133 (135)
+.+-|. +.+...+++|++||=.|++||
T Consensus 58 P~~vA~--m~~~L~~~~g~~VLEIGtGsG 84 (209)
T COG2518 58 PHMVAR--MLQLLELKPGDRVLEIGTGSG 84 (209)
T ss_pred cHHHHH--HHHHhCCCCCCeEEEECCCch
Confidence 344443 235568999999999998776
No 197
>cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis. In tumorigenesis, DNA methylation by Dnmt3b is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of Dnmt3b has been identified in patients with ICF syndrome (immunodeficiency, centromeric instability, and facial anomalies), a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=22.13 E-value=64 Score=19.96 Aligned_cols=10 Identities=70% Similarity=1.521 Sum_probs=8.3
Q ss_pred CCCCCEEEEc
Q 048381 61 FKKGDLVWGT 70 (135)
Q Consensus 61 ~~~Gd~V~~~ 70 (135)
|++||.|++-
T Consensus 1 f~vGDlVWaK 10 (87)
T cd05835 1 FNVGDLVWGK 10 (87)
T ss_pred CCCCCEEEEe
Confidence 6899999974
No 198
>COG0298 HypC Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=22.08 E-value=69 Score=19.93 Aligned_cols=12 Identities=42% Similarity=0.708 Sum_probs=10.0
Q ss_pred CCCCCCEEEEec
Q 048381 118 APKKGEYVFVSA 129 (135)
Q Consensus 118 ~~~~g~~VlV~g 129 (135)
..+-||+||||-
T Consensus 38 ~v~~GdyVLVHv 49 (82)
T COG0298 38 EVKVGDYVLVHV 49 (82)
T ss_pred ccccCCEEEEEe
Confidence 567899999994
No 199
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=21.93 E-value=1.7e+02 Score=18.00 Aligned_cols=14 Identities=14% Similarity=0.154 Sum_probs=7.0
Q ss_pred hhcCCCCCCEEEEe
Q 048381 115 EIRAPKKGEYVFVS 128 (135)
Q Consensus 115 ~~~~~~~g~~VlV~ 128 (135)
.+.+++|||++=+.
T Consensus 39 ~L~~L~pGq~l~f~ 52 (85)
T PF04225_consen 39 PLTRLKPGQTLEFQ 52 (85)
T ss_dssp -GGG--TT-EEEEE
T ss_pred hHhhCCCCCEEEEE
Confidence 34578999987654
No 200
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=21.93 E-value=1.1e+02 Score=23.18 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=14.3
Q ss_pred hhcCCCCCCEEEEecCCCCCC
Q 048381 115 EIRAPKKGEYVFVSAASGAVG 135 (135)
Q Consensus 115 ~~~~~~~g~~VlV~ga~g~vG 135 (135)
++.+-.+++-|+|||| |++|
T Consensus 32 eI~~~~~~~livVHGg-GSFG 51 (252)
T COG1608 32 EISNGKPEKLIVVHGG-GSFG 51 (252)
T ss_pred HHhcCCcccEEEEecC-cccc
Confidence 3444567889999998 6655
No 201
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=21.61 E-value=1.2e+02 Score=23.08 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=15.4
Q ss_pred hhcCCCCCCEEEEecCCCCC
Q 048381 115 EIRAPKKGEYVFVSAASGAV 134 (135)
Q Consensus 115 ~~~~~~~g~~VlV~ga~g~v 134 (135)
+..++++||+||+.+.++|+
T Consensus 298 ~~~~~~~Gd~vll~~~G~G~ 317 (326)
T PRK05963 298 LEQPLREGERLLFAAAGAGM 317 (326)
T ss_pred HhCCCCCCCEEEEEEEehhh
Confidence 34578999999999876654
No 202
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=21.24 E-value=91 Score=20.76 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=10.9
Q ss_pred cCCCCCCEEEEecCCCC
Q 048381 117 RAPKKGEYVFVSAASGA 133 (135)
Q Consensus 117 ~~~~~g~~VlV~ga~g~ 133 (135)
.++++||.+++..+||.
T Consensus 99 ~~~~~gDvli~iS~SG~ 115 (138)
T PF13580_consen 99 YDIRPGDVLIVISNSGN 115 (138)
T ss_dssp TT--TT-EEEEEESSS-
T ss_pred cCCCCCCEEEEECCCCC
Confidence 45899999999988774
No 203
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S. pombe hypothetical protein SPBC215, as well as ISWI complex protein 4. The ISWI (imitation switch) proteins are ATPases responsible for chromatin remodeling in eukaryotes, and SPBC215 is proposed to also bind chromatin. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=21.02 E-value=70 Score=20.17 Aligned_cols=10 Identities=40% Similarity=0.677 Sum_probs=8.2
Q ss_pred CCCCCEEEEc
Q 048381 61 FKKGDLVWGT 70 (135)
Q Consensus 61 ~~~Gd~V~~~ 70 (135)
|++||.|++-
T Consensus 1 f~~GDlVwaK 10 (93)
T cd05840 1 FQPGDRVLAK 10 (93)
T ss_pred CCCCCEEEEe
Confidence 6899999973
No 204
>PF09103 BRCA-2_OB1: BRCA2, oligonucleotide/oligosaccharide-binding, domain 1; InterPro: IPR015187 This domain assumes an OB fold, which consists of a highly curved five-stranded beta-sheet that closes on itself to form a beta-barrel. OB1 has a shallow groove formed by one face of the curved sheet and is demarcated by two loops, one between beta 1 and beta 2 and another between beta 4 and beta 5, which allows for weak single strand DNA binding. The domain also binds the 70-amino acid DSS1 (deleted in split-hand/split foot syndrome) protein, which was originally identified as one of three genes that map to a 1.5-Mb locus deleted in an inherited developmental malformation syndrome []. ; GO: 0000724 double-strand break repair via homologous recombination; PDB: 1IYJ_D 1MIU_A.
Probab=20.90 E-value=98 Score=20.50 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=12.2
Q ss_pred HhhcCCCCCCEEEEecCC
Q 048381 114 YEIRAPKKGEYVFVSAAS 131 (135)
Q Consensus 114 ~~~~~~~~g~~VlV~ga~ 131 (135)
.+.++++-|+++.|+||.
T Consensus 58 l~~gki~vG~KL~v~GA~ 75 (118)
T PF09103_consen 58 LRKGKIRVGQKLRVCGAE 75 (118)
T ss_dssp HHTT-S-TT-EEEESSBE
T ss_pred HHhCCccCCccEEEECce
Confidence 456789999999999973
No 205
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=20.87 E-value=62 Score=28.47 Aligned_cols=16 Identities=25% Similarity=0.381 Sum_probs=12.7
Q ss_pred CCCCCCCCEEEEcCCe
Q 048381 58 HPEFKKGDLVWGTTGW 73 (135)
Q Consensus 58 ~~~~~~Gd~V~~~g~~ 73 (135)
+-++++|||+.+..+.
T Consensus 794 CgkLkVGDrilAVNG~ 809 (984)
T KOG3209|consen 794 CGKLKVGDRILAVNGQ 809 (984)
T ss_pred hccccccceEEEecCe
Confidence 4569999999987553
No 206
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=20.25 E-value=1.2e+02 Score=22.84 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=14.5
Q ss_pred hhcCCCCCCEEEEecCCCC
Q 048381 115 EIRAPKKGEYVFVSAASGA 133 (135)
Q Consensus 115 ~~~~~~~g~~VlV~ga~g~ 133 (135)
+..++++||++++.+.+.|
T Consensus 294 ~~~~~~~G~~vll~~~G~G 312 (320)
T cd00830 294 EEGKLKKGDLVLLLGFGAG 312 (320)
T ss_pred HcCCCCCCCEEEEEEEchH
Confidence 3456889999999987654
No 207
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.
Probab=20.00 E-value=1.3e+02 Score=22.65 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=14.9
Q ss_pred HhhcCCCCCCEEEEecCCCC
Q 048381 114 YEIRAPKKGEYVFVSAASGA 133 (135)
Q Consensus 114 ~~~~~~~~g~~VlV~ga~g~ 133 (135)
.+..++++||+|++.+.++|
T Consensus 289 ~~~~~~~~Gd~vll~~~G~G 308 (318)
T TIGR00747 289 LRTGRIKPGDLLLLVAFGGG 308 (318)
T ss_pred HHcCCCCCCCEEEEEEEehh
Confidence 34456899999999887554
Done!