Query 048384
Match_columns 538
No_of_seqs 308 out of 1824
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 09:00:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048384.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048384hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2197 Ypt/Rab-specific GTPas 100.0 3.6E-50 7.8E-55 433.3 20.3 437 31-536 3-450 (488)
2 KOG2224 Uncharacterized conser 100.0 1.8E-46 4E-51 381.5 19.6 302 74-533 403-735 (781)
3 KOG4567 GTPase-activating prot 100.0 5.3E-41 1.1E-45 332.0 23.9 226 275-529 119-362 (370)
4 KOG1092 Ypt/Rab-specific GTPas 100.0 5.2E-40 1.1E-44 335.7 22.4 271 96-531 178-477 (484)
5 KOG2058 Ypt/Rab GTPase activat 100.0 3.3E-39 7.3E-44 339.3 21.6 186 277-512 197-384 (436)
6 smart00164 TBC Domain in Tre-2 100.0 3.2E-38 6.8E-43 304.2 17.4 149 277-452 47-197 (199)
7 COG5210 GTPase-activating prot 100.0 8.2E-35 1.8E-39 318.2 22.7 226 74-453 179-408 (496)
8 PF00566 RabGAP-TBC: Rab-GTPas 100.0 9.4E-33 2E-37 267.6 22.9 147 277-453 47-194 (214)
9 KOG2223 Uncharacterized conser 100.0 3.1E-31 6.7E-36 271.3 21.6 198 277-527 356-555 (586)
10 KOG2222 Uncharacterized conser 100.0 1.3E-29 2.7E-34 261.3 16.6 200 277-527 212-418 (848)
11 KOG1091 Ypt/Rab-specific GTPas 100.0 8E-28 1.7E-32 253.7 20.1 203 274-527 102-362 (625)
12 KOG1093 Predicted protein kina 99.9 1E-24 2.3E-29 230.2 17.6 200 277-530 391-593 (725)
13 KOG4347 GTPase-activating prot 99.9 1.9E-24 4E-29 231.9 13.0 174 280-508 247-422 (671)
14 KOG4436 Predicted GTPase activ 99.9 7.3E-23 1.6E-27 222.6 21.2 188 274-512 619-808 (948)
15 KOG2595 Predicted GTPase activ 99.9 6.7E-23 1.5E-27 205.6 16.3 203 279-530 99-303 (395)
16 KOG1102 Rab6 GTPase activator 99.8 1.6E-20 3.4E-25 199.6 12.2 179 278-510 187-367 (397)
17 KOG2221 PDZ-domain interacting 99.7 4.9E-18 1.1E-22 161.7 3.8 125 276-428 142-267 (267)
18 KOG1648 Uncharacterized conser 99.5 2.4E-15 5.3E-20 156.9 -0.8 284 72-535 527-810 (813)
19 KOG4436 Predicted GTPase activ 99.4 1.4E-11 3.1E-16 135.4 16.6 187 278-508 229-418 (948)
20 KOG3636 Uncharacterized conser 99.3 1E-11 2.2E-16 129.0 12.9 168 331-525 94-269 (669)
21 KOG2801 Probable Rab-GAPs [Int 98.5 1E-06 2.3E-11 88.0 13.1 177 331-531 113-297 (559)
22 KOG2197 Ypt/Rab-specific GTPas 98.3 4.3E-07 9.3E-12 99.3 5.1 80 75-156 147-226 (488)
23 PF14961 BROMI: Broad-minded p 96.4 0.095 2.1E-06 62.1 16.2 179 332-534 1086-1284(1296)
24 KOG2224 Uncharacterized conser 89.7 0.12 2.7E-06 54.8 0.6 35 345-379 565-599 (781)
25 KOG4631 NADH:ubiquinone oxidor 37.5 24 0.00051 30.0 1.9 25 96-120 26-51 (100)
26 PHA03308 transcriptional regul 35.5 54 0.0012 37.7 4.9 14 100-114 1320-1333(1463)
27 PHA03308 transcriptional regul 29.6 33 0.00072 39.3 2.1 16 111-126 1357-1372(1463)
28 PF08109 Antimicrobial14: Lact 28.0 38 0.00083 22.2 1.3 15 346-360 3-17 (31)
29 COG3860 Uncharacterized protei 22.8 2.1E+02 0.0045 24.1 5.0 59 81-150 10-70 (89)
30 PF10815 ComZ: ComZ; InterPro 22.2 1.8E+02 0.0038 22.5 4.1 40 397-436 5-44 (56)
No 1
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-50 Score=433.33 Aligned_cols=437 Identities=34% Similarity=0.534 Sum_probs=322.4
Q ss_pred CCCCcchheehheeeeccCCCCcccccCCCCCCCCCCccccCCCCCCHHHHHhhhccCCCCccchHHHHHHHHhCCCCcc
Q 048384 31 SSSSSWVHLRSVLFVVTSSSPASCSSSDRTGRLKSPWSRRKRKLPLSPQQWRSLFTSDGKFRDGGVKFLKKVRSRGVDPS 110 (538)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~W~~~f~~~Gr~~~~~~~~lk~v~~gGi~p~ 110 (538)
+.+..|+|++++++...++++..+.+...-...+.+|..++++.++++++|.+.|+++|++.. .++++++|+.|||+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~~~~-~~~~l~~i~~~gi~ps 81 (488)
T KOG2197|consen 3 SESKQWDSLKSLLLSLDSSSFTVVDSREPCLSQSRIWVLIKPGKTLKPEKWQANFDPDGRLSG-FVKLLKLIILGGIDPS 81 (488)
T ss_pred ccchhhhhcccceEEEeeccCccccccccccccCCcceeeccccccchhhhhhccCCCccccc-hhhhheeeecCCCCCc
Confidence 447799999999999998888885543333677779999999999999999999999999997 5899999999999999
Q ss_pred hHHHHHHHhhCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCCcccccccccccCCCCCCccccCCCCc----
Q 048384 111 IRVEVWPFLLGVYDLNSTKEEREIIRTQKRKEYEKLRRECRRLLKRGNGSLKLKEISETGYSGDSGSVLQDTDTSS---- 186 (538)
Q Consensus 111 iR~eVW~fLLGvy~~~st~eEr~~i~~~~r~~Y~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 186 (538)
||+|||+||||||+.++|.+||.+++..++.+|..|+.+|+.+.+...+..... +.+...+..+|.
T Consensus 82 ir~evw~fll~~y~~~~~~~~~~~~r~~~~~~~~~l~~~c~~~~~~~~~~~~~~----------~~~~~~~~~~p~~~~~ 151 (488)
T KOG2197|consen 82 IRGEVWEFLLGCYDLDSTFEERNQLRVARRPQYNELLLVCQMMKSTVGNGLSYV----------VSSVVSDNRSPSLTLE 151 (488)
T ss_pred ccchhHHHHhcccCCCCchHHHHHHHhhcccchHHHHHHcchhhhhhcccccee----------eeEEeecCCCCcchhh
Confidence 999999999999999999999999999999999999999999998633220100 011111111121
Q ss_pred -chhhh-hhhcccc-c-cccccCCcCCCCCccc---cccCCCCCCCCCCCchhhhhcccCCCCCCCCCCCCCCCCCCCCc
Q 048384 187 -SEDVV-SARESLS-S-EERSQDAEYSDDPSSI---LLDGKLSSDSDSSEDPEVIHAFSCSEDGEENNPDEAPNENIPLT 259 (538)
Q Consensus 187 -~~~~~-~~~~~~~-~-~~~~~~~~~~~~p~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (538)
....+ ....... . ....+...+..+|... -.+...++.+...++....... . .+ ......+-.+
T Consensus 152 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~-----~~~~k~qW~~-- 222 (488)
T KOG2197|consen 152 EYNSNAMREGRLDESVHQRERIFSGGLSKSLRAEVWKFLLDYSPWDSTTRERVSLRKL-T-DE-----YFRLKLQWSS-- 222 (488)
T ss_pred hhhhhhhhccccccchhhhheecccccccchhhhhhhhhhcccCcccccccccccccc-c-cc-----Hhhhhhhhee--
Confidence 00000 0000000 0 0000000001111000 0000111122211111000000 0 00 0000000000
Q ss_pred hhhhhhhhhcchhhhHHHHHHhhhhhhcCCCCccCCCCchhhhHHHHhhhhhhcccCCCCCCChhhhhHHHHHHHHHHHH
Q 048384 260 NTEVRDKLRATEDFATWQRIIRLDAVRANSEWITYCPSQATVSEVRARRSAEAVGLKDYDHLEPCRIFHAARLVAILEAY 339 (538)
Q Consensus 260 ~~~~~~~~~~~e~~~~~~~~I~~Dv~RT~~~~~~f~~~~~~~~~~~a~~~~e~~~l~d~~~~~~~~~~~~~~L~~IL~ay 339 (538)
..+........+..+...|.+||.||++.+.+|+... + .+...|.+||.+|
T Consensus 223 --~~~~~~~~~~~~~~~~~~i~~dv~rtDr~~~~~~~~~------------------n---------~~~~~l~~iL~ty 273 (488)
T KOG2197|consen 223 --TSPEQSPESEGYLERKSRIEKDVGRTDRSLEFYEGEE------------------N---------PHLARLVDILLTY 273 (488)
T ss_pred --ccccccccccchhhhhhhhhhhccccchhhhhhhccc------------------c---------cCHHHHHHHHhhc
Confidence 0000001111245677889999999999999987521 0 2467899999999
Q ss_pred HhhCCCCCcccchhHhHHHHHHHhccchHHHHHHHHHhhhhcccCCCChhHHHHHHHHHHHHHHhhCHHHHHHHHhcCCC
Q 048384 340 ALYDPEIGYCQGMSDLLSPITAVITEDHEAFWCFVGFMKKARHNFRLDEVGIRRQLSIVSKIIKVKDSHLYRHLEKLQAE 419 (538)
Q Consensus 340 a~~~pdvGY~QGMndLaa~lL~v~~~E~~aFw~f~~lm~~~~~~f~~~~~gl~~~l~~l~~LL~~~dP~L~~hL~~~~i~ 419 (538)
+.+++++||||||+|+++|++.++++|.+|||||+.+|+++.++|..++.|++.++..+..+++..||.||+||++++..
T Consensus 274 ~~~~~d~GY~QgmSDllspi~~v~~de~~aFwcFv~fm~~~~~nF~~d~~~~~~Ql~~~~~li~~~dp~l~~hLe~~d~~ 353 (488)
T KOG2197|consen 274 AVYDFDLGYCQGMSDLLSPILIVMEDEVEAFWCFVGFMDRLRHNFRIDQSGMQTQLAQLSSLIQELDPRLYQHLEKLDAG 353 (488)
T ss_pred ccccCccccccCchhhcCcceeeecCchHHHHHHHHHHHHHhhcCccccccHHHHhhhhhhhccccCHHHHhhccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhhhhccccchhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHhCCC
Q 048384 420 DCFFVYRMVVVLFRRELSFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLKRRKLIIEKYSS 499 (538)
Q Consensus 420 ~~~f~~rW~l~lF~relp~~~vlrlWD~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~lf~iaa~ll~~r~~iL~~~~d 499 (538)
..+|||||++++|+|||.++++++||+++|+.... .+|++|.+.+++-+..+.++.+..+
T Consensus 354 ~~~f~fr~l~v~frrEf~~ed~l~LWEvlw~~~~~--------------------~~f~~~~~~~~l~~~~~~l~~~~~~ 413 (488)
T KOG2197|consen 354 DLFFCFRMLLVPFRREFEFEDSLRLWEVLWTDLPS--------------------PHFHLYVAPAILNKDPQTLMEQGKS 413 (488)
T ss_pred ccceeeehhhcccccccccccHHHHHHHHHhcCcc--------------------chHHHHHHHhhhhcchHHHHhcCcc
Confidence 99999999999999999999999999999998742 3889998888887778888888888
Q ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHhhcc
Q 048384 500 MDEILRECNSMAGQLDVWKLLDDAHDLVVTLHDKIER 536 (538)
Q Consensus 500 ~deil~~ln~l~~~idv~~lL~~A~~L~~~~~~~i~~ 536 (538)
+++++++++.+..+.|+..++..|..+..+.+..++.
T Consensus 414 ~~e~l~~i~~~~~~~d~~~~~~~A~~~~~~~k~~~~~ 450 (488)
T KOG2197|consen 414 FNEVLKHVNLLSEKADVLWVLVRAEALERQNKQMEEP 450 (488)
T ss_pred chhHHhhcccccccchhhhHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999998888776553
No 2
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.8e-46 Score=381.54 Aligned_cols=302 Identities=30% Similarity=0.545 Sum_probs=250.4
Q ss_pred CCCCHHHHHh-hhccCCCCccchHHHHHHHHhCCCCcchHHHHHHHhhCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHH
Q 048384 74 LPLSPQQWRS-LFTSDGKFRDGGVKFLKKVRSRGVDPSIRVEVWPFLLGVYDLNSTKEEREIIRTQKRKEYEKLRRECRR 152 (538)
Q Consensus 74 ~~l~~~~W~~-~f~~~Gr~~~~~~~~lk~v~~gGi~p~iR~eVW~fLLGvy~~~st~eEr~~i~~~~r~~Y~~l~~~~~~ 152 (538)
+.++..-|.. +++..|.+.+. -+++|.||.|||+-+||++||||||.+|.+.||.|+|++++.+||++|+++.++ +
T Consensus 403 kki~~n~~~~t~lne~gqiedd-~~lrk~iffggid~sir~evwpfllk~ys~est~edr~al~~~krkey~eiqqk--r 479 (781)
T KOG2224|consen 403 KKIGTNAFLGTHLNEKGQIEDD-LKLRKAIFFGGIDKSIRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQQK--R 479 (781)
T ss_pred hhhhHHHHHHhhhhhcccchhH-HHhhhhheeccchhhhhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHH--H
Confidence 3466677877 88889999976 689999999999999999999999999999999999999999999999998765 1
Q ss_pred HhhcCCCCcccccccccccCCCCCCccccCCCCcchhhhhhhccccccccccCCcCCCCCccccccCCCCCCCCCCCchh
Q 048384 153 LLKRGNGSLKLKEISETGYSGDSGSVLQDTDTSSSEDVVSARESLSSEERSQDAEYSDDPSSILLDGKLSSDSDSSEDPE 232 (538)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~ 232 (538)
+..+ .| |
T Consensus 480 lysm------------------------------------------------------sp-------------------e 486 (781)
T KOG2224|consen 480 LYSM------------------------------------------------------SP-------------------E 486 (781)
T ss_pred hhcC------------------------------------------------------CH-------------------H
Confidence 1111 00 0
Q ss_pred hhhcccCCCCCCCCCCCCCCCCCCCCchhhhhhhhhcchhhhHHHHHHhhhhhhcCCCCccCCCCchhhhHHHHhhhhhh
Q 048384 233 VIHAFSCSEDGEENNPDEAPNENIPLTNTEVRDKLRATEDFATWQRIIRLDAVRANSEWITYCPSQATVSEVRARRSAEA 312 (538)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~I~~Dv~RT~~~~~~f~~~~~~~~~~~a~~~~e~ 312 (538)
.+-.| ++..+-.++|||+||+++++||....
T Consensus 487 eh~~f-----------------------------------wknvq~tvdkdvvrtdrnn~ff~gdd-------------- 517 (781)
T KOG2224|consen 487 EHIAF-----------------------------------WKNVQFTVDKDVVRTDRNNPFFCGDD-------------- 517 (781)
T ss_pred HHHHH-----------------------------------HhheEEEEecceeeccCCCCcccCCC--------------
Confidence 00011 11112247899999999999997542
Q ss_pred cccCCCCCCChhhhhHHHHHHHHHHHHHhhCCCCCcccchhHhHHHHHHHhccchHHHHHHHHHhhhhcc----------
Q 048384 313 VGLKDYDHLEPCRIFHAARLVAILEAYALYDPEIGYCQGMSDLLSPITAVITEDHEAFWCFVGFMKKARH---------- 382 (538)
Q Consensus 313 ~~l~d~~~~~~~~~~~~~~L~~IL~aya~~~pdvGY~QGMndLaa~lL~v~~~E~~aFw~f~~lm~~~~~---------- 382 (538)
+++.+.+++||..||.|||.+||.|||+|++||+|.-..+|.++||||++||+.+.+
T Consensus 518 -------------npn~e~mk~illn~avyn~~m~ysqgmsdllapvlcevqnesetfwcfvglmqgmsdlvapilaevl 584 (781)
T KOG2224|consen 518 -------------NPNTESMKNILLNFAVYNPAMGYSQGMSDLLAPVLCEVQNESETFWCFVGLMQGMSDLVAPILAEVL 584 (781)
T ss_pred -------------CCcHHHHHHHHHhheeecccccccccchhhcchhhhhhccccchhhhhhhhhccchhhhhhHHHhhh
Confidence 346778999999999999999999988888888888887777788888887773211
Q ss_pred ----------------cC--CCChhHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCc--chhhHHHHHHhcCCCCCHHHHH
Q 048384 383 ----------------NF--RLDEVGIRRQLSIVSKIIKVKDSHLYRHLEKLQAED--CFFVYRMVVVLFRRELSFEQTL 442 (538)
Q Consensus 383 ----------------~f--~~~~~gl~~~l~~l~~LL~~~dP~L~~hL~~~~i~~--~~f~~rW~l~lF~relp~~~vl 442 (538)
.| .+....|..++..++.||+.+.|..|+||.++|-+. .+||.||++++|+||||-..++
T Consensus 585 desdtfwcfvglmqna~fv~sp~d~dmd~~l~ylreliri~~~~fykhl~q~~ed~lellfchrwlllcfkref~ea~ai 664 (781)
T KOG2224|consen 585 DESDTFWCFVGLMQNAFFVCSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQHGEDGLELLFCHRWLLLCFKREFPEAEAI 664 (781)
T ss_pred ccccchhhhhhhhcceEEEeCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhhcccHHHHH
Confidence 11 123346888999999999999999999999988543 6899999999999999999999
Q ss_pred HHHHHHHhhhhhhhhccccchhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcccCCCCHHHHHHH
Q 048384 443 CLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLKRRKLIIEKYSSMDEILRECNSMAGQLDVWKLLDD 522 (538)
Q Consensus 443 rlWD~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~lf~iaa~ll~~r~~iL~~~~d~deil~~ln~l~~~idv~~lL~~ 522 (538)
|||++.|+... ++.|++|+|.|+|-.+-+.++.+....|+++-++.++...+|-+-+|++
T Consensus 665 riweacwa~y~--------------------tdyfhlficlaiiaiy~ddvi~q~l~~demllhf~nlam~mdgelilrk 724 (781)
T KOG2224|consen 665 RIWEACWAHYL--------------------TDYFHLFICLAIIAIYADDVIAQNLAPDEMLLHFGNLAMHMDGELILRK 724 (781)
T ss_pred HHHHHHHHHhh--------------------HHHHHHHHHHHHHHHhhhHHHHhhcCchhHHHhhhhhhhhcCchhhHHH
Confidence 99999999873 5689999999999999999988878899999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 048384 523 AHDLVVTLHDK 533 (538)
Q Consensus 523 A~~L~~~~~~~ 533 (538)
|..|..+|+..
T Consensus 725 ar~ll~qfr~l 735 (781)
T KOG2224|consen 725 ARGLLHQFRLL 735 (781)
T ss_pred HHHHHHHHhhc
Confidence 99999999864
No 3
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=5.3e-41 Score=331.99 Aligned_cols=226 Identities=26% Similarity=0.416 Sum_probs=186.2
Q ss_pred HHHHHHhhhhhhcCCCCccCCCCchhh----hHHHHhhhhhhcccCCCCCCChhhhhHHHHHHHHHHHHHhhCCCCCccc
Q 048384 275 TWQRIIRLDAVRANSEWITYCPSQATV----SEVRARRSAEAVGLKDYDHLEPCRIFHAARLVAILEAYALYDPEIGYCQ 350 (538)
Q Consensus 275 ~~~~~I~~Dv~RT~~~~~~f~~~~~~~----~~~~a~~~~e~~~l~d~~~~~~~~~~~~~~L~~IL~aya~~~pdvGY~Q 350 (538)
+...||++||.||+|+..+|+...... +..+.+..+++...++.. ..+.....|||..||..||.|||||
T Consensus 119 e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~------gl~~~~~erilfiyAKLNpGi~YVQ 192 (370)
T KOG4567|consen 119 EVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRL------GLTRFAAERILFIYAKLNPGIGYVQ 192 (370)
T ss_pred HHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhccc------chhhhHHHHHHHHHhhcCCcchHHh
Confidence 345689999999999999987532211 111111111111101100 1122346999999999999999999
Q ss_pred chhHhHHHHHHHhcc----------chHHHHHHHHHhhhhcccCCCC----hhHHHHHHHHHHHHHHhhCHHHHHHHHhc
Q 048384 351 GMSDLLSPITAVITE----------DHEAFWCFVGFMKKARHNFRLD----EVGIRRQLSIVSKIIKVKDSHLYRHLEKL 416 (538)
Q Consensus 351 GMndLaa~lL~v~~~----------E~~aFw~f~~lm~~~~~~f~~~----~~gl~~~l~~l~~LL~~~dP~L~~hL~~~ 416 (538)
|||.|+||+++|+.. |+|||.||..||..++++|..+ ..|++..+..+..+|+.+|-+||.||++.
T Consensus 193 GMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMseirDnf~k~LDdS~~GI~~~Msr~~~~lk~~D~EL~~~L~~~ 272 (370)
T KOG4567|consen 193 GMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEIRDNFIKTLDDSVGGIHFLMSRLSELLKKHDEELWRHLEEK 272 (370)
T ss_pred hhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 999999999999853 5799999999999999998643 35788889999999999999999999999
Q ss_pred CCCcchhhHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhhhhccccchhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHh
Q 048384 417 QAEDCFFVYRMVVVLFRRELSFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLKRRKLIIEK 496 (538)
Q Consensus 417 ~i~~~~f~~rW~l~lF~relp~~~vlrlWD~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~lf~iaa~ll~~r~~iL~~ 496 (538)
+|.+.+|+|||+.+|++.|||++++++|||.++++... .++++++|+++|+..|+.||+
T Consensus 273 ~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r--------------------fd~Ll~iCcsmlil~Re~il~- 331 (370)
T KOG4567|consen 273 EIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR--------------------FDFLLYICCSMLILVRERILE- 331 (370)
T ss_pred CCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh--------------------hHHHHHHHHHHHHHHHHHHHh-
Confidence 99999999999999999999999999999999999754 389999999999999999999
Q ss_pred CCCHHHHHHHHhcccCCCCHHHHHHHHHHHHHH
Q 048384 497 YSSMDEILRECNSMAGQLDVWKLLDDAHDLVVT 529 (538)
Q Consensus 497 ~~d~deil~~ln~l~~~idv~~lL~~A~~L~~~ 529 (538)
.||+..++.|++.+ ..|+..++..|..|-.+
T Consensus 332 -~DF~~nmkLLQ~yp-~tdi~~~l~~A~~Lr~~ 362 (370)
T KOG4567|consen 332 -GDFTVNMKLLQNYP-TTDISKMLAVADSLRDK 362 (370)
T ss_pred -cchHHHHHHHhcCC-CCCHHHHHHHHHHHHhc
Confidence 79999999999998 89999999999877644
No 4
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.2e-40 Score=335.68 Aligned_cols=271 Identities=26% Similarity=0.430 Sum_probs=234.5
Q ss_pred HHHHHHHHhCCCCcchHHHHHHHhhCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCCcccccccccccCCCC
Q 048384 96 VKFLKKVRSRGVDPSIRVEVWPFLLGVYDLNSTKEEREIIRTQKRKEYEKLRRECRRLLKRGNGSLKLKEISETGYSGDS 175 (538)
Q Consensus 96 ~~~lk~v~~gGi~p~iR~eVW~fLLGvy~~~st~eEr~~i~~~~r~~Y~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 175 (538)
.+.++++..+||+...|+.||++|+||.|.++. -|+...+.||++|.+++.+|-.....
T Consensus 178 ~~~Lr~l~w~Gvp~~~Rp~~Wkll~gylp~n~~--rr~~~l~~Kr~eY~~~v~~~~~~~~~------------------- 236 (484)
T KOG1092|consen 178 LEKLRKLCWNGVPSKMRPIVWKLLSGYLPPNSD--RREGTLQRKRKEYVDSVVQYFDSLTN------------------- 236 (484)
T ss_pred HHHHHHHccCCCCccccCccceeeecccCcchh--hhhhhHHHHHHHHHHHHHHHhccCCC-------------------
Confidence 478899999999999999999999999999865 56778899999999999997431100
Q ss_pred CCccccCCCCcchhhhhhhccccccccccCCcCCCCCccccccCCCCCCCCCCCchhhhhcccCCCCCCCCCCCCCCCCC
Q 048384 176 GSVLQDTDTSSSEDVVSARESLSSEERSQDAEYSDDPSSILLDGKLSSDSDSSEDPEVIHAFSCSEDGEENNPDEAPNEN 255 (538)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (538)
++
T Consensus 237 --------------------------------------------------~~---------------------------- 238 (484)
T KOG1092|consen 237 --------------------------------------------------GD---------------------------- 238 (484)
T ss_pred --------------------------------------------------cc----------------------------
Confidence 00
Q ss_pred CCCchhhhhhhhhcchhhhHHHHHHhhhhhhcCCCCccCCCCchhhhHHHHhhhhhhcccCCCCCCChhhhhHHHHHHHH
Q 048384 256 IPLTNTEVRDKLRATEDFATWQRIIRLDAVRANSEWITYCPSQATVSEVRARRSAEAVGLKDYDHLEPCRIFHAARLVAI 335 (538)
Q Consensus 256 ~~~~~~~~~~~~~~~e~~~~~~~~I~~Dv~RT~~~~~~f~~~~~~~~~~~a~~~~e~~~l~d~~~~~~~~~~~~~~L~~I 335 (538)
+++. ..+||..|++|++|+.++|+.. .-++.|.+|
T Consensus 239 ---------------~~~d-~~rQI~id~prm~p~~~l~q~~-----------------------------~vq~~lerI 273 (484)
T KOG1092|consen 239 ---------------EDQD-TWRQIPIDIPRMNPHIPLFQQK-----------------------------IVQEMLERI 273 (484)
T ss_pred ---------------ccCc-cccccccCCCCCCccccchhhH-----------------------------HHHHHHHHH
Confidence 0000 1358999999999999988743 235689999
Q ss_pred HHHHHhhCCCCCcccchhHhHHHHHHHhcc-------------------------chHHHHHHHHHhhhhcccCCCChhH
Q 048384 336 LEAYALYDPEIGYCQGMSDLLSPITAVITE-------------------------DHEAFWCFVGFMKKARHNFRLDEVG 390 (538)
Q Consensus 336 L~aya~~~pdvGY~QGMndLaa~lL~v~~~-------------------------E~~aFw~f~~lm~~~~~~f~~~~~g 390 (538)
|+.++.++|..||+||.+|++.||+.++.. |++||||+.+|++.+.++|...++|
T Consensus 274 l~iwairhpAsGyvqgindlvtpf~vvfl~e~l~~~~~~~~~d~~~l~~E~~~~iEADsyWClskLLD~IQDNYtfaQpG 353 (484)
T KOG1092|consen 274 LYIWAIRHPASGYVQGINDLVTPFFVVFLSEYLGPIMDVESIDMSLLPAENAEDIEADAYWCLSKLLDGIQDNYTFAQPG 353 (484)
T ss_pred HHHHHHhcccccccccceeeechhhhhhhHhhcCccccccccchhhccHHHHhhhhhhHHHHHHHHHHHhhhhhhhcChh
Confidence 999999999999999999999999988642 5799999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHhcCCCcchhhHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhhhhccccchhhhhccC
Q 048384 391 IRRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVVLFRRELSFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQR 470 (538)
Q Consensus 391 l~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~lF~relp~~~vlrlWD~~l~~g~~~~~~~~~~~~~~~~~~ 470 (538)
++.+...++.|++.+|+.||+||+++|++...|+|||+-+||.||||+..++||||.|+++...
T Consensus 354 Iq~kV~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmNcLLmRE~pl~~~iRlWDTY~aE~dg---------------- 417 (484)
T KOG1092|consen 354 IQRKVKNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMNCLLMREFPLRCTIRLWDTYLAEPDG---------------- 417 (484)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHHHHHHhhccchhHHHHHHHhhcCccc----------------
Confidence 9999999999999999999999999999999999999999999999999999999999999753
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcccCC----CCHHHHHHHHHHHHHHHH
Q 048384 471 APPTDDLLLYAIAASVLKRRKLIIEKYSSMDEILRECNSMAGQ----LDVWKLLDDAHDLVVTLH 531 (538)
Q Consensus 471 ~~~~~~~~lf~iaa~ll~~r~~iL~~~~d~deil~~ln~l~~~----idv~~lL~~A~~L~~~~~ 531 (538)
..+|++|+|||.|++-++.|++ +||.+++-+|+++++. -+++-+|..|..+-.-|.
T Consensus 418 ---f~~FhvYvcAAFL~kW~~eL~e--~DFQ~~ilfLQnlPT~~W~d~eIellLseA~~~k~~f~ 477 (484)
T KOG1092|consen 418 ---FNEFHVYVCAAFLLKWSSELME--NDFQELILFLQNLPTHNWSDREIELLLSEAFRLKSVFS 477 (484)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHc
Confidence 3589999999999999999996 7999999999999864 477888888865554443
No 5
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-39 Score=339.28 Aligned_cols=186 Identities=24% Similarity=0.398 Sum_probs=165.0
Q ss_pred HHHHhhhhhhcCCCC-ccCCCCchhhhHHHHhhhhhhcccCCCCCCChhhhhHHHHHHHHHHHHHhhCCCCCcccchhHh
Q 048384 277 QRIIRLDAVRANSEW-ITYCPSQATVSEVRARRSAEAVGLKDYDHLEPCRIFHAARLVAILEAYALYDPEIGYCQGMSDL 355 (538)
Q Consensus 277 ~~~I~~Dv~RT~~~~-~~f~~~~~~~~~~~a~~~~e~~~l~d~~~~~~~~~~~~~~L~~IL~aya~~~pdvGY~QGMndL 355 (538)
.++|+.|+.||+|++ +.|.... ..+.++|+|||.||+.+||.||||||||+|
T Consensus 197 ~~qI~~DL~RTfP~n~~~~~~~~---------------------------~~~~~~LrRvL~Aya~hNp~vGYCQGmNfl 249 (436)
T KOG2058|consen 197 VKQIKLDLPRTFPDNFKGFDSED---------------------------SDGRQTLRRVLLAYARHNPSVGYCQGMNFL 249 (436)
T ss_pred HHHHHhccccccCCCcccCCCCC---------------------------chHHHHHHHHHHHHHhhCCCCcchhhHHHH
Confidence 568999999999999 6776442 123568999999999999999999999999
Q ss_pred HHHHHHHhccchHHHHHHHHHhhhhccc-CCCChhHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCcchhhHHHHHHhcCC
Q 048384 356 LSPITAVITEDHEAFWCFVGFMKKARHN-FRLDEVGIRRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVVLFRR 434 (538)
Q Consensus 356 aa~lL~v~~~E~~aFw~f~~lm~~~~~~-f~~~~~gl~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~lF~r 434 (538)
||++|++++.|++|||||+.+++++.+. |..++.|.+.+..+|+.+++..+|+|+.||..++++..+|++.||+++|..
T Consensus 250 AallLL~~~~EE~AFW~Lv~iie~~lp~Yyt~nL~g~qvDQ~VL~~llre~lPkl~~~l~~~~~~~~l~t~~wfLt~f~d 329 (436)
T KOG2058|consen 250 AALLLLLMPSEEDAFWMLVALIENYLPRYYTPNLIGSQVDQKVLRELLREKLPKLSLHLEGNGVDASLETLPWFLTLFVD 329 (436)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHhchhhcCchhhhhhccHHHHHHHHHHHCHHHHHhhhhcCCCeeeeehhhhHHHhcc
Confidence 9999999998889999999999996665 667789999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhhhhhhhccccchhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcccC
Q 048384 435 ELSFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLKRRKLIIEKYSSMDEILRECNSMAG 512 (538)
Q Consensus 435 elp~~~vlrlWD~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~lf~iaa~ll~~r~~iL~~~~d~deil~~ln~l~~ 512 (538)
.+|.+.+|||||++|++|. .++|.+|+++++..+..+..+.+..++++++..+..
T Consensus 330 ~lP~~t~LrIwD~~f~eGs-----------------------kvlfr~Alai~k~~ee~il~~~~~~~i~~~~~~~~~ 384 (436)
T KOG2058|consen 330 ILPSETVLRIWDCLFYEGS-----------------------KVLFRVALAILKKHEEEILKEDSSKEILRVLPDLTK 384 (436)
T ss_pred cccHHHHHHHHHHHHhccc-----------------------HHHHHHHHHHHHHhHHHHhcCCCHHHHHHHHHHHHH
Confidence 9999999999999999995 468878888888665555557889999999877653
No 6
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=100.00 E-value=3.2e-38 Score=304.23 Aligned_cols=149 Identities=34% Similarity=0.651 Sum_probs=135.9
Q ss_pred HHHHhhhhhhcCCCCccCCCCchhhhHHHHhhhhhhcccCCCCCCChhhhhHHHHHHHHHHHHHhhCCCCCcccchhHhH
Q 048384 277 QRIIRLDAVRANSEWITYCPSQATVSEVRARRSAEAVGLKDYDHLEPCRIFHAARLVAILEAYALYDPEIGYCQGMSDLL 356 (538)
Q Consensus 277 ~~~I~~Dv~RT~~~~~~f~~~~~~~~~~~a~~~~e~~~l~d~~~~~~~~~~~~~~L~~IL~aya~~~pdvGY~QGMndLa 356 (538)
..+|++||.||+|++++|+... ...++.|++||.+|+.+||++||||||++||
T Consensus 47 ~~~I~~Dv~Rt~~~~~~f~~~~---------------------------~~~~~~L~~IL~~~~~~~p~~gY~QGm~~i~ 99 (199)
T smart00164 47 VHQIEKDLRRTFPEHSFFQDKE---------------------------GPGQESLRRVLKAYALYNPEVGYCQGMNFLA 99 (199)
T ss_pred HHHHhcccCCCCCCchhhcCCC---------------------------cccHHHHHHHHHHHHHHCCCCceeccHHHHH
Confidence 4579999999999999997421 1245689999999999999999999999999
Q ss_pred HHHHHHhccchHHHHHHHHHhhhhccc-CCCChhHHHHHHHHHHHHHHhhCHHHHHHHHh-cCCCcchhhHHHHHHhcCC
Q 048384 357 SPITAVITEDHEAFWCFVGFMKKARHN-FRLDEVGIRRQLSIVSKIIKVKDSHLYRHLEK-LQAEDCFFVYRMVVVLFRR 434 (538)
Q Consensus 357 a~lL~v~~~E~~aFw~f~~lm~~~~~~-f~~~~~gl~~~l~~l~~LL~~~dP~L~~hL~~-~~i~~~~f~~rW~l~lF~r 434 (538)
++||.++.+|++|||||+++|++.... |..+.+++...+..++.+|+.++|+||+||++ +++.+.+|+++|++++|++
T Consensus 100 ~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~l~~~l~~~~~i~~~~~~~~W~~~lF~~ 179 (199)
T smart00164 100 APLLLVMPDEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDKLGIDPSLYALRWFLTLFAR 179 (199)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHhcCCCchhHHHHHHHHHHHh
Confidence 999999988889999999999997666 55666789999999999999999999999996 9999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhh
Q 048384 435 ELSFEQTLCLWEVMWADQ 452 (538)
Q Consensus 435 elp~~~vlrlWD~~l~~g 452 (538)
+||++.++||||+++++|
T Consensus 180 ~~~~~~~~riwD~~l~eG 197 (199)
T smart00164 180 ELPLEIVLRIWDVLFAEG 197 (199)
T ss_pred hCCHHHHHHHHHHHHhcC
Confidence 999999999999999998
No 7
>COG5210 GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=8.2e-35 Score=318.18 Aligned_cols=226 Identities=27% Similarity=0.478 Sum_probs=189.6
Q ss_pred CCCCHHHHHhhhccCCC--CccchHHHHHHHHhCCCCcchHHHHHHHhhCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHH
Q 048384 74 LPLSPQQWRSLFTSDGK--FRDGGVKFLKKVRSRGVDPSIRVEVWPFLLGVYDLNSTKEEREIIRTQKRKEYEKLRRECR 151 (538)
Q Consensus 74 ~~l~~~~W~~~f~~~Gr--~~~~~~~~lk~v~~gGi~p~iR~eVW~fLLGvy~~~st~eEr~~i~~~~r~~Y~~l~~~~~ 151 (538)
.+.....|.++|+..+. ......++++.|+.| |++++|++||.+++|++++..... ..|+.+...+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g-ip~~~r~~vw~~~~~~~~~~~~~~----------~~y~~~~~~~~ 247 (496)
T COG5210 179 ELAADKLWISYLDPNPLSFLPVQLSKLRELIRKG-IPNELRGDVWEFLLGIGFDLDKNP----------GLYERLLNLHR 247 (496)
T ss_pred hhHHHHHHHHHHhcccchhhhhhHHHHHHHHHhc-CChHhhhhhHHHHhccchhhccCc----------hHHHHHHHHHH
Confidence 56678899999999888 222234667777777 999999999999999999876533 55666665532
Q ss_pred HHhhcCCCCcccccccccccCCCCCCccccCCCCcchhhhhhhccccccccccCCcCCCCCccccccCCCCCCCCCCCch
Q 048384 152 RLLKRGNGSLKLKEISETGYSGDSGSVLQDTDTSSSEDVVSARESLSSEERSQDAEYSDDPSSILLDGKLSSDSDSSEDP 231 (538)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~ 231 (538)
.-..
T Consensus 248 ~~~~---------------------------------------------------------------------------- 251 (496)
T COG5210 248 EAKI---------------------------------------------------------------------------- 251 (496)
T ss_pred hcCC----------------------------------------------------------------------------
Confidence 2000
Q ss_pred hhhhcccCCCCCCCCCCCCCCCCCCCCchhhhhhhhhcchhhhHHHHHHhhhhhhcCCCCccCCCCchhhhHHHHhhhhh
Q 048384 232 EVIHAFSCSEDGEENNPDEAPNENIPLTNTEVRDKLRATEDFATWQRIIRLDAVRANSEWITYCPSQATVSEVRARRSAE 311 (538)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~I~~Dv~RT~~~~~~f~~~~~~~~~~~a~~~~e 311 (538)
+ . .....+|++||.||+|.+..|+....
T Consensus 252 -------------------------~-~--------------~~~~~~i~~Dl~rt~~~~~~f~~~~s------------ 279 (496)
T COG5210 252 -------------------------P-T--------------QEIISQIEKDLSRTFPDNSLFQTEIS------------ 279 (496)
T ss_pred -------------------------C-c--------------HHHHHHHHccccccccccccccCccc------------
Confidence 0 0 01256899999999999999975421
Q ss_pred hcccCCCCCCChhhhhHHHHHHHHHHHHHhhCCCCCcccchhHhHHHHHHHhccchHHHHHHHHHhh-h-hcccCCCChh
Q 048384 312 AVGLKDYDHLEPCRIFHAARLVAILEAYALYDPEIGYCQGMSDLLSPITAVITEDHEAFWCFVGFMK-K-ARHNFRLDEV 389 (538)
Q Consensus 312 ~~~l~d~~~~~~~~~~~~~~L~~IL~aya~~~pdvGY~QGMndLaa~lL~v~~~E~~aFw~f~~lm~-~-~~~~f~~~~~ 389 (538)
.+.+.|++||.+|+.+||++||||||++|||+||+++..|++|||||++||+ . +..+|..++.
T Consensus 280 ---------------~~~~~L~rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~Ee~AF~~l~~L~~~~~l~~~~~~~~~ 344 (496)
T COG5210 280 ---------------IRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEQAFWCLVKLLKNYGLPGYFLKNLS 344 (496)
T ss_pred ---------------ccHHHHHHHHHHHHhcCCCCceeccHHHHHHHHHHHhhhhHHHHHHHHHHHHhccchhhcccCCc
Confidence 1124699999999999999999999999999999999977899999999999 3 6777889999
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHhcCCCcchhhHHHHHHhcCCCCCHHHHHHHHHHHHhhhh
Q 048384 390 GIRRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVVLFRRELSFEQTLCLWEVMWADQA 453 (538)
Q Consensus 390 gl~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~lF~relp~~~vlrlWD~~l~~g~ 453 (538)
|++.++..+..+++..+|+||+||...++...+|+++||+++|.++||++.++||||++|++|.
T Consensus 345 G~~~~~~~l~~~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~ 408 (496)
T COG5210 345 GLHRDLKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGS 408 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999995
No 8
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=100.00 E-value=9.4e-33 Score=267.61 Aligned_cols=147 Identities=31% Similarity=0.635 Sum_probs=128.7
Q ss_pred HHHHhhhhhhcCCCCccCCCCchhhhHHHHhhhhhhcccCCCCCCChhhhhHHHHHHHHHHHHHhhCCCCCcccchhHhH
Q 048384 277 QRIIRLDAVRANSEWITYCPSQATVSEVRARRSAEAVGLKDYDHLEPCRIFHAARLVAILEAYALYDPEIGYCQGMSDLL 356 (538)
Q Consensus 277 ~~~I~~Dv~RT~~~~~~f~~~~~~~~~~~a~~~~e~~~l~d~~~~~~~~~~~~~~L~~IL~aya~~~pdvGY~QGMndLa 356 (538)
.++|++|+.||+++...+... ..++.|.+||.+|+.++|++||||||++|+
T Consensus 47 ~~~I~~Dv~rt~~~~~~~~~~-----------------------------~~~~~l~~iL~~~~~~~~~~~Y~qG~~~i~ 97 (214)
T PF00566_consen 47 FEQIDKDVNRTFPNSFLFKNE-----------------------------QNQKSLERILSAYAKYNPDVGYCQGMNDIA 97 (214)
T ss_dssp HHHHHHHHCTSSTSCCCSTTH-----------------------------HHHHHHHHHHHHHHHHTTTTSS-TTHHHHH
T ss_pred HHHHHHhhhhhcccchhhhhc-----------------------------chHHHHHHHHHHhccccccccccchhhhhh
Confidence 568999999999844433322 356789999999999999999999999999
Q ss_pred HHHHHHhccchHHHHHHHHHh-hhhcccCCCChhHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCcchhhHHHHHHhcCCC
Q 048384 357 SPITAVITEDHEAFWCFVGFM-KKARHNFRLDEVGIRRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVVLFRRE 435 (538)
Q Consensus 357 a~lL~v~~~E~~aFw~f~~lm-~~~~~~f~~~~~gl~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~lF~re 435 (538)
++|++++.+|++|||||+++| ..+...|..+..+++..+..++.+++.++|+||+||++.++++..|+++|++++|+++
T Consensus 98 ~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~l~~~l~~~~~~~~~~~~~w~~~lF~~~ 177 (214)
T PF00566_consen 98 APLLLVFLDEEEAFWCFVQLLNYYLPDFFQPNFKGLQKILKIFEQLLKKHDPELYNHLKQLGVDPEIYAFPWFLTLFSRS 177 (214)
T ss_dssp HHHHHTCSHHHHHHHHHHHHHTHHGGGGTSTTHHHHHHHHHHHHHHHHHHTHHHHHHHHHTT-GGHHHHHHHHHTTTTTT
T ss_pred hhhhhhcccccchhccccchhcccccccccccccccchhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHhhcCCc
Confidence 999988888889999999999 4466777787789999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhhh
Q 048384 436 LSFEQTLCLWEVMWADQA 453 (538)
Q Consensus 436 lp~~~vlrlWD~~l~~g~ 453 (538)
+|++.++|||| ++.+|.
T Consensus 178 l~~~~~~~lwD-~l~~g~ 194 (214)
T PF00566_consen 178 LPFDDVLRLWD-FLLEGY 194 (214)
T ss_dssp S-HHHHHHHHH-HHHHCT
T ss_pred CCHHHHHHHHH-HHHcCC
Confidence 99999999999 666774
No 9
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.98 E-value=3.1e-31 Score=271.26 Aligned_cols=198 Identities=20% Similarity=0.338 Sum_probs=176.8
Q ss_pred HHHHhhhhhhcCCCCccCCCCchhhhHHHHhhhhhhcccCCCCCCChhhhhHHHHHHHHHHHHHhhCCCCCcccchhHhH
Q 048384 277 QRIIRLDAVRANSEWITYCPSQATVSEVRARRSAEAVGLKDYDHLEPCRIFHAARLVAILEAYALYDPEIGYCQGMSDLL 356 (538)
Q Consensus 277 ~~~I~~Dv~RT~~~~~~f~~~~~~~~~~~a~~~~e~~~l~d~~~~~~~~~~~~~~L~~IL~aya~~~pdvGY~QGMndLa 356 (538)
..+|++|+.||||+..+|+.+. +..+.|..||.||+.|.||+||+|||++|+
T Consensus 356 v~~i~LDisrTfpsl~iFqk~G----------------------------Py~d~L~~lL~AYt~yRpDvgYVqgmSFIa 407 (586)
T KOG2223|consen 356 VELIKLDISRTFPSLSIFQKGG----------------------------PYHDDLHSLLGAYTCYRPDVGYVQGMSFIA 407 (586)
T ss_pred hhheeechhccCcceeeeccCC----------------------------chHHHHHHHhhhheeecCccccccchHHHH
Confidence 4579999999999999998653 234579999999999999999999999999
Q ss_pred HHHHHHhccchHHHHHHHHHhhh--hcccCCCChhHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCcchhhHHHHHHhcCC
Q 048384 357 SPITAVITEDHEAFWCFVGFMKK--ARHNFRLDEVGIRRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVVLFRR 434 (538)
Q Consensus 357 a~lL~v~~~E~~aFw~f~~lm~~--~~~~f~~~~~gl~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~lF~r 434 (538)
|+||+.++. ++||.||.+|+++ ....|..+.+.|...+..|+..+++..|+|+.||.++++.+.+|.+.|+.+||+.
T Consensus 408 AvLllnmd~-~~AFiafANLLdkp~q~Aff~~d~s~m~~yf~tfe~~leenlp~L~~Hl~kl~l~PDiylidwiftlysk 486 (586)
T KOG2223|consen 408 AVLLLNMDL-ADAFIAFANLLDKPCQQAFFRVDHSSMLSYFATFEVFLEENLPKLFTHLKKLELTPDIYLIDWIFTLYSK 486 (586)
T ss_pred HHHHHcCCc-HHHHHHHHHHhccHHHHHHHhcCcHHHHHHHHHHHHHHHhccHHHHHHHHhccCCCchhhHHHHHHHHhc
Confidence 999999986 7999999999999 4455788888899999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhhhhhhhccccchhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcccCCC
Q 048384 435 ELSFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLKRRKLIIEKYSSMDEILRECNSMAGQL 514 (538)
Q Consensus 435 elp~~~vlrlWD~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~lf~iaa~ll~~r~~iL~~~~d~deil~~ln~l~~~i 514 (538)
.+|++.++||||+|+.+| +-++|..++.|+++-+.+|.. +||..+.++|..++..+
T Consensus 487 slpldlacRIwDvy~rdg-----------------------eeFlfr~~lgIlklyepkLl~-mDf~~~~qfLtklp~dL 542 (586)
T KOG2223|consen 487 SLPLDLACRIWDVYCRDG-----------------------EEFLFRTALGILKLYEPKLLV-MDFIHVAQFLTKLPEDL 542 (586)
T ss_pred cCChHHhhhhhheeeecc-----------------------hHHHHHHHHHHHHHccchHhh-hhHHHHHHHHHhCcccC
Confidence 999999999999999999 456888999999977776664 89999999999999999
Q ss_pred CHHHHHHHHHHHH
Q 048384 515 DVWKLLDDAHDLV 527 (538)
Q Consensus 515 dv~~lL~~A~~L~ 527 (538)
..+++......+.
T Consensus 543 ~~eelF~~i~~~~ 555 (586)
T KOG2223|consen 543 TPEELFMHIAYIQ 555 (586)
T ss_pred CHHHHHHHHHHHh
Confidence 8888776554443
No 10
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=99.96 E-value=1.3e-29 Score=261.27 Aligned_cols=200 Identities=21% Similarity=0.385 Sum_probs=175.3
Q ss_pred HHHHhhhhhhcCCCCccCCCCchhhhHHHHhhhhhhcccCCCCCCChhhhhHHHHHHHHHHHHHhhCCCCCcccchhHhH
Q 048384 277 QRIIRLDAVRANSEWITYCPSQATVSEVRARRSAEAVGLKDYDHLEPCRIFHAARLVAILEAYALYDPEIGYCQGMSDLL 356 (538)
Q Consensus 277 ~~~I~~Dv~RT~~~~~~f~~~~~~~~~~~a~~~~e~~~l~d~~~~~~~~~~~~~~L~~IL~aya~~~pdvGY~QGMndLa 356 (538)
.+||++|+.|+.|++..|.+... .+...|+|||.+.|+.+|++||||||.-|+
T Consensus 212 ~~qiekdllr~lpnn~cf~k~n~---------------------------~gi~~lrrilk~ia~ifpdigycqg~gviv 264 (848)
T KOG2222|consen 212 GKQIEKDLLRILPNNACFSKKNG---------------------------EGIEALRRILKCIAFIFPDIGYCQGMGVIV 264 (848)
T ss_pred hHHHHHHHHHhCCCcceeeCCCC---------------------------cchHHHHHHHhhheeecCCcccccCccHHH
Confidence 46899999999999999986531 245589999999999999999999999999
Q ss_pred HHHHHHhccchHHHHHHHHHhhhhc-ccC-CCChhHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCcchhhHHHHHHhcCC
Q 048384 357 SPITAVITEDHEAFWCFVGFMKKAR-HNF-RLDEVGIRRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVVLFRR 434 (538)
Q Consensus 357 a~lL~v~~~E~~aFw~f~~lm~~~~-~~f-~~~~~gl~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~lF~r 434 (538)
|.+|+++.+| .|||++..+++.+. ++| ....-|++.+-.+...|++.+.|.|-+-|+.++++..+.+..||++||..
T Consensus 265 a~lllf~~ee-~afwmmaaiiedilp~nfysqtllgiqaderv~~~li~~~l~~ldeal~~~dielslitl~w~ltlf~n 343 (848)
T KOG2222|consen 265 ACLLLFCEEE-NAFWMMAAIIEDILPANFYSQTLLGIQADERVMHHLIACHLPDLDEALEDHDIELSLITLHWFLTLFAN 343 (848)
T ss_pred HHHHHHhcch-hHHHHHHHHHHHhcCchhhhhhHhccchhHHHHHHHHHhccCchhHHHHhccceeeehHHHHHHHHHHH
Confidence 9999999987 99999999999954 454 45567999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhhhhhhhccccchhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHh----CCCHHHHHHHHhcc
Q 048384 435 ELSFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLKRRKLIIEK----YSSMDEILRECNSM 510 (538)
Q Consensus 435 elp~~~vlrlWD~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~lf~iaa~ll~~r~~iL~~----~~d~deil~~ln~l 510 (538)
.|.....+||||.||.+| ...+|.+.+.+|+++++-|.. ..+..+|...+.++
T Consensus 344 v~~~killriwd~~fy~g-----------------------~i~ifql~i~ilkmkeqdi~~iaettensa~if~als~i 400 (848)
T KOG2222|consen 344 VFHMKILLRIWDFFFYEG-----------------------GINIFQLIIGILKMKEQDIKEIAETTENSADIFNALSDI 400 (848)
T ss_pred HHHHHHHHHHHHhheecC-----------------------cchhHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHhC
Confidence 999999999999999998 457888888899887765543 36677999999999
Q ss_pred cCCC-CHHHHHHHHHHHH
Q 048384 511 AGQL-DVWKLLDDAHDLV 527 (538)
Q Consensus 511 ~~~i-dv~~lL~~A~~L~ 527 (538)
|... ||++++..|-..-
T Consensus 401 p~~vtdve~l~~~~~~~~ 418 (848)
T KOG2222|consen 401 PAEVTDVEKLFEQAGEFE 418 (848)
T ss_pred CchhhhHHHHHHHHhhcc
Confidence 9765 9999998886543
No 11
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8e-28 Score=253.69 Aligned_cols=203 Identities=26% Similarity=0.327 Sum_probs=166.0
Q ss_pred hHHHHHHhhhhhhcCCCC-ccCCCCchhhhHHHHhhhhhhcccCCCCCCChhhhhHHHHHHHHHHHHHhhCCCCCcccch
Q 048384 274 ATWQRIIRLDAVRANSEW-ITYCPSQATVSEVRARRSAEAVGLKDYDHLEPCRIFHAARLVAILEAYALYDPEIGYCQGM 352 (538)
Q Consensus 274 ~~~~~~I~~Dv~RT~~~~-~~f~~~~~~~~~~~a~~~~e~~~l~d~~~~~~~~~~~~~~L~~IL~aya~~~pdvGY~QGM 352 (538)
++..+.|+.||.||||++ .||+.... +..|++||..||..||.+||-|||
T Consensus 102 ~EL~~~i~qDvsRtfPe~~~fFqs~~~-----------------------------q~mLr~iLl~~~lehp~i~YrQGM 152 (625)
T KOG1091|consen 102 AELEKTIDQDVSRTFPEHSLFFQSPEV-----------------------------QGMLRRILLLYALEHPEIGYRQGM 152 (625)
T ss_pred HHHHHhhcchhhccCcchhhhhcCchh-----------------------------hHHHHHHHHHHHhhchhhhHHhhh
Confidence 345678999999999999 88876532 337999999999999999999999
Q ss_pred hHhHHHHHHHhccc------------------------------hHHH--HHHHHHhhhhcccC----------------
Q 048384 353 SDLLSPITAVITED------------------------------HEAF--WCFVGFMKKARHNF---------------- 384 (538)
Q Consensus 353 ndLaa~lL~v~~~E------------------------------~~aF--w~f~~lm~~~~~~f---------------- 384 (538)
++|.||+++|+.-+ .+++ -+|+.+|.....+|
T Consensus 153 HElLAPl~fVl~~D~q~l~h~se~~~~~l~f~E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~d 232 (625)
T KOG1091|consen 153 HELLAPLLFVLHVDNQALLHVSESLFDKLGFEERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHD 232 (625)
T ss_pred hhhhhhhhhheehhHHHHHHHHHhhhhhcCcchhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcC
Confidence 99999999986532 1223 24555554321111
Q ss_pred --------CCChhHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCcchhhHHHHHHhcCCCCCHHHHHHHHH-HHHhhhhhh
Q 048384 385 --------RLDEVGIRRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVVLFRRELSFEQTLCLWE-VMWADQAAI 455 (538)
Q Consensus 385 --------~~~~~gl~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~lF~relp~~~vlrlWD-~~l~~g~~~ 455 (538)
....+.+......+..+|...|+.||.||.+.+|++.+|.+||+.+||.||||+.++|.+|| ++++++
T Consensus 233 ay~~~d~l~~~l~~v~e~~~~~~~lL~~~D~~Lh~HL~~l~i~pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~--- 309 (625)
T KOG1091|consen 233 AYVMFDALMPGLPPVFEANFAQYHLLAKVDKSLHSHLVELGIEPQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDS--- 309 (625)
T ss_pred cccchhhhcccchhHHHHhhhhhhhhhhccHHHHHHHHhcCCchHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccC---
Confidence 11223456667788999999999999999999999999999999999999999999999999 888877
Q ss_pred hhccccchhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcccCCCCHHHHHHHHHHHH
Q 048384 456 RAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLKRRKLIIEKYSSMDEILRECNSMAGQLDVWKLLDDAHDLV 527 (538)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~lf~iaa~ll~~r~~iL~~~~d~deil~~ln~l~~~idv~~lL~~A~~L~ 527 (538)
|...++.|+++++|+++|+.++. .+...+++++.+++..+|++.+++.|.-+-
T Consensus 310 -----------------pr~~Lv~~m~VsmLL~IRd~Lls--s~~~tcL~~Lm~yP~~~Dv~~~iekAl~l~ 362 (625)
T KOG1091|consen 310 -----------------PRGILVACMFVSMLLYIRDSLLS--SEYQTCLQYLMNYPEIIDVDKFIEKALHLQ 362 (625)
T ss_pred -----------------chHHHHHHHHHHHHHHHHHHHHH--hcchhHHHHHhcCCCcCcHHHHHHHHHHHH
Confidence 44578999999999999999998 455559999999999999999999995544
No 12
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=99.92 E-value=1e-24 Score=230.21 Aligned_cols=200 Identities=21% Similarity=0.342 Sum_probs=175.9
Q ss_pred HHHHhhhhhhcCCCCccCCCCchhhhHHHHhhhhhhcccCCCCCCChhhhhHHHHHHHHHHHHHhhCCCCCcccchhHhH
Q 048384 277 QRIIRLDAVRANSEWITYCPSQATVSEVRARRSAEAVGLKDYDHLEPCRIFHAARLVAILEAYALYDPEIGYCQGMSDLL 356 (538)
Q Consensus 277 ~~~I~~Dv~RT~~~~~~f~~~~~~~~~~~a~~~~e~~~l~d~~~~~~~~~~~~~~L~~IL~aya~~~pdvGY~QGMndLa 356 (538)
.+||+.|++|+...-.+.+.. ...++|+|+|.|++..+|..-|.||+.-+|
T Consensus 391 drqievdiprchQyd~~lsSp-----------------------------~~~r~lrRvLkawv~~s~~fvywqgldsLa 441 (725)
T KOG1093|consen 391 DRQIEVDIPRCHQYDELLSSP-----------------------------KGHRKLRRVLKAWVTWSPIFVYWQGLDSLA 441 (725)
T ss_pred hhhhhcccchhhhcccccCCH-----------------------------HHHHHHHHHHHHHHhcCcceeecCCChhhh
Confidence 468999999998543333221 356789999999999999999999999999
Q ss_pred HHHHHH-hccchHHHHHHHHHhhhhcccC-CCCh-hHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCcchhhHHHHHHhcC
Q 048384 357 SPITAV-ITEDHEAFWCFVGFMKKARHNF-RLDE-VGIRRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVVLFR 433 (538)
Q Consensus 357 a~lL~v-~~~E~~aFw~f~~lm~~~~~~f-~~~~-~gl~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~lF~ 433 (538)
+|||+. +++|..||-|+..|+-++..+| ..++ .-++..+..|..++..+||+|++||..+|+.+.+|++.||+|+|+
T Consensus 442 ~PFl~ln~Nne~laF~~~~~fi~kycq~fflkdns~vikeyLs~f~~l~AfhDpeL~qHl~~~~f~~eLyAiPwflT~Fs 521 (725)
T KOG1093|consen 442 APFLYLNFNNELLAFACIATFIPKYCQHFFLKDNSNVIKEYLSMFSQLLAFHDPELLQHLIDIGFIPELYAIPWFLTMFS 521 (725)
T ss_pred hhHHHHhcCchHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 999986 5778899999999999976664 4434 457899999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhhhhhhhccccchhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcccCC
Q 048384 434 RELSFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLKRRKLIIEKYSSMDEILRECNSMAGQ 513 (538)
Q Consensus 434 relp~~~vlrlWD~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~lf~iaa~ll~~r~~iL~~~~d~deil~~ln~l~~~ 513 (538)
++||...++.+||.++..+. .|.+++.+|++.+.|+.+|. ++|.|++.++.+++ +
T Consensus 522 hvlpl~kil~LwD~lml~~~----------------------SFplmi~vAil~~lR~~LLa--~nfne~illf~d~p-d 576 (725)
T KOG1093|consen 522 HVLPLHKILHLWDNLMLGHS----------------------SFPLMIGVAILIQLRDPLLA--CNFNECILLFSDLP-D 576 (725)
T ss_pred hhccHHHHHHHHHHHhcCCC----------------------ccHHHHHHHHHHHhhhhhhh--CCchhheeeeccCC-c
Confidence 99999999999999999885 67888888888899999998 78999999999999 9
Q ss_pred CCHHHHHHHHHHHHHHH
Q 048384 514 LDVWKLLDDAHDLVVTL 530 (538)
Q Consensus 514 idv~~lL~~A~~L~~~~ 530 (538)
+|++.+++....++...
T Consensus 577 ldId~~Ires~~l~e~t 593 (725)
T KOG1093|consen 577 LDIDVCIRESYHLMETT 593 (725)
T ss_pred ccHHHHHHHHhhhhhCC
Confidence 99999999998877653
No 13
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=99.91 E-value=1.9e-24 Score=231.94 Aligned_cols=174 Identities=23% Similarity=0.329 Sum_probs=151.3
Q ss_pred HhhhhhhcCCCCccCCCCchhhhHHHHhhhhhhcccCCCCCCChhhhhHHHHHHHHHHHHHhhCCCCCcccchhHhHHHH
Q 048384 280 IRLDAVRANSEWITYCPSQATVSEVRARRSAEAVGLKDYDHLEPCRIFHAARLVAILEAYALYDPEIGYCQGMSDLLSPI 359 (538)
Q Consensus 280 I~~Dv~RT~~~~~~f~~~~~~~~~~~a~~~~e~~~l~d~~~~~~~~~~~~~~L~~IL~aya~~~pdvGY~QGMndLaa~l 359 (538)
|++|++|.-|+++-|+... +...|++||.||++.||+|||||-||-+++.+
T Consensus 247 IE~Dl~rsLpEhpA~Q~e~-----------------------------gi~aLR~vL~Aya~~Np~vGYcQaMNIV~s~l 297 (671)
T KOG4347|consen 247 IEPDLGRSLPEHPAFQSEP-----------------------------GIAALRRVLTAYAWSNPEVGYCQAMNIVGSEL 297 (671)
T ss_pred ccCCCCCCCCcchhhhCCC-----------------------------chhhHHHHHHhhhccCCchhHHHHHHHHHHhh
Confidence 8899999999999998642 34589999999999999999999999999999
Q ss_pred HHHhccchHHHHHHHHHhhhhccc-CCCChhHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCcchhhHHHHHHhcCCCCCH
Q 048384 360 TAVITEDHEAFWCFVGFMKKARHN-FRLDEVGIRRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVVLFRRELSF 438 (538)
Q Consensus 360 L~v~~~E~~aFw~f~~lm~~~~~~-f~~~~~gl~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~lF~relp~ 438 (538)
|+++.+| +|||+++.+.+.+.+. |.....|...+..+++.+++.+.|.||.|+..++ ...+....||+++|...+|+
T Consensus 298 ll~~~EE-eafwll~~lce~~ip~yys~~vvGtliDQ~vfe~lve~~lP~l~~~~~~l~-~l~~Vsl~WFlslFls~m~l 375 (671)
T KOG4347|consen 298 LLFCKEE-EAFWLLSKLCEIYIPDYYSKTVVGTLIDQSVFEELVEDTLPVLGEHLAVLG-QLSTVSLSWFLSLFLSLMPL 375 (671)
T ss_pred hhhhccc-hHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhc-ccceEeeHHHHHHHHHHcch
Confidence 9999987 9999999999996665 4455678888889999999999999999999999 67888999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhccccchhhhhccCCCCCchHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHh
Q 048384 439 EQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLKR-RKLIIEKYSSMDEILRECN 508 (538)
Q Consensus 439 ~~vlrlWD~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~lf~iaa~ll~~-r~~iL~~~~d~deil~~ln 508 (538)
+..+||-|+||.+|. -++|-++++|+.. .+.|+. +.|-.+++..+.
T Consensus 376 e~a~~ilD~FF~eG~-----------------------rvlFqiaLail~~N~~~il~-~~dDge~~~vl~ 422 (671)
T KOG4347|consen 376 EYAVRILDCFFYEGP-----------------------RVLFQIALAILKQNAERILS-ATDDGEAMMVLG 422 (671)
T ss_pred HHHHHHHhhhhhccc-----------------------HHHHHHHHHHHHhhHHHhcc-cCCchHHHHHHH
Confidence 999999999999995 4688899999974 455554 566566666554
No 14
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.90 E-value=7.3e-23 Score=222.65 Aligned_cols=188 Identities=21% Similarity=0.379 Sum_probs=169.1
Q ss_pred hHHHHHHhhhhhhcCCCCccCCCCchhhhHHHHhhhhhhcccCCCCCCChhhhhHHHHHHHHHHHHHhhCCCCCcccchh
Q 048384 274 ATWQRIIRLDAVRANSEWITYCPSQATVSEVRARRSAEAVGLKDYDHLEPCRIFHAARLVAILEAYALYDPEIGYCQGMS 353 (538)
Q Consensus 274 ~~~~~~I~~Dv~RT~~~~~~f~~~~~~~~~~~a~~~~e~~~l~d~~~~~~~~~~~~~~L~~IL~aya~~~pdvGY~QGMn 353 (538)
.+-+..|..|.-||||.|++|+.. .| .++..|.++|.+|+..+|++|||||..
T Consensus 619 te~qhAi~idlgrtfp~h~~~~~q---------------lg------------~gqlsl~n~Lkayslld~e~gycqg~~ 671 (948)
T KOG4436|consen 619 TEQQHAILIDLGRTFPTHPYFSDQ---------------LG------------LGQLSLFNLLKAYSLLDPEVGYCQGLS 671 (948)
T ss_pred HHHHHHHHHhhccccCCCHHHHhh---------------cc------------ccHHHHHHHHHHhcccCccccccCcch
Confidence 334566999999999999999632 11 245689999999999999999999999
Q ss_pred HhHHHHHHHhccchHHHHHHHHHhhh--hcccCCCChhHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCcchhhHHHHHHh
Q 048384 354 DLLSPITAVITEDHEAFWCFVGFMKK--ARHNFRLDEVGIRRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVVL 431 (538)
Q Consensus 354 dLaa~lL~v~~~E~~aFw~f~~lm~~--~~~~f~~~~~gl~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~l 431 (538)
++|++||+.|.+| .||-++-.||.. ++..|.+++..++.++..+..+++.+.+.||+||++++|.+.+|+..||+++
T Consensus 672 fv~gvlllh~~e~-~afellk~LM~~r~~r~qy~pdm~~lq~qmyqLsrl~hd~hrdlyn~le~~ei~pslyAapw~lt~ 750 (948)
T KOG4436|consen 672 FVAGVLLLHMSEE-NAFELLKFLMFDRGMRKQYRPDMKKLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTV 750 (948)
T ss_pred hhhhhhHhhcchh-hHHHHHHHHHHHHhhHhhhchHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccChHHhhhHHHHHH
Confidence 9999999999976 999999999987 6677999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhhhhhhhhccccchhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhccc
Q 048384 432 FRRELSFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLKRRKLIIEKYSSMDEILRECNSMA 511 (538)
Q Consensus 432 F~relp~~~vlrlWD~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~lf~iaa~ll~~r~~iL~~~~d~deil~~ln~l~ 511 (538)
|+.-||+..+-|++|++|..|. -++|.+|..++..++.+|..+.+|++|+.+++...
T Consensus 751 fasQf~lGfvarvfd~~flq~t-----------------------evifK~a~~llsv~k~~l~e~dn~e~i~d~~k~~~ 807 (948)
T KOG4436|consen 751 FASQFPLGFVARVFDLIFLQGT-----------------------EVIFKVALSLLSVHKQLLLEKDNFEEIVDFLKTTL 807 (948)
T ss_pred HHhhCcchHHHHHHHHHHhhcc-----------------------chhhhhHHHHHHhhHHHHHhhhhHHHHHHHHHHhh
Confidence 9999999999999999999984 47899999999999988888899999999988654
Q ss_pred C
Q 048384 512 G 512 (538)
Q Consensus 512 ~ 512 (538)
.
T Consensus 808 p 808 (948)
T KOG4436|consen 808 P 808 (948)
T ss_pred h
Confidence 3
No 15
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=99.90 E-value=6.7e-23 Score=205.63 Aligned_cols=203 Identities=21% Similarity=0.264 Sum_probs=172.8
Q ss_pred HHhhhhhhcCCCCccCCCCchhhhHHHHhhhhhhcccCCCCCCChhhhhHHHHHHHHHHHHHhhCCCCCcccchhHhHHH
Q 048384 279 IIRLDAVRANSEWITYCPSQATVSEVRARRSAEAVGLKDYDHLEPCRIFHAARLVAILEAYALYDPEIGYCQGMSDLLSP 358 (538)
Q Consensus 279 ~I~~Dv~RT~~~~~~f~~~~~~~~~~~a~~~~e~~~l~d~~~~~~~~~~~~~~L~~IL~aya~~~pdvGY~QGMndLaa~ 358 (538)
|+.+||.|++...+. + ++ +..+..+++.|..++......||.+.|.||.||||..
T Consensus 99 QV~LDv~RSl~rfpp---g-----------------~p-----~~~R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~t 153 (395)
T KOG2595|consen 99 QVILDVERSLGRFPP---G-----------------IP-----KELRLQLQKQLTELILRVLRKYPTLNYYQGYHDIVVT 153 (395)
T ss_pred eEEEehhhhhccCCC---C-----------------CC-----HHHHHHHHHHHHHHHHHHHHHCCCcchhcchhHHHHH
Confidence 688999999865442 1 00 0123456778888888889999999999999999999
Q ss_pred HHHHhccchHHHHHHHHHhhh-hcccCCCChhHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCcchhhHHHHHHhcCCCC-
Q 048384 359 ITAVITEDHEAFWCFVGFMKK-ARHNFRLDEVGIRRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVVLFRREL- 436 (538)
Q Consensus 359 lL~v~~~E~~aFw~f~~lm~~-~~~~f~~~~~gl~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~lF~rel- 436 (538)
||+++.+. +|+-++..+-.. +++...+.+.+..+++..+..+|+..+|+||+.|++-++ .++|+..|++|||++.+
T Consensus 154 fLLv~gE~-~Al~l~E~L~~~~lrdfM~~Tld~t~~qL~~i~~iIk~~nP~Ly~~l~~aev-gtlFaLsWllTWFaH~L~ 231 (395)
T KOG2595|consen 154 FLLVVGEL-EALSLMEELSTLHLRDFMLPTLDFTVRQLRLISPIIKEVNPELYQFLQSAEV-GTLFALSWLLTWFAHNLK 231 (395)
T ss_pred HHHhhhhH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHhhcc-cceehhhHHHHHHhhcch
Confidence 99999964 899888888765 455555667888999999999999999999999998887 47899999999999999
Q ss_pred CHHHHHHHHHHHHhhhhhhhhccccchhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcccCCCCH
Q 048384 437 SFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLKRRKLIIEKYSSMDEILRECNSMAGQLDV 516 (538)
Q Consensus 437 p~~~vlrlWD~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~lf~iaa~ll~~r~~iL~~~~d~deil~~ln~l~~~idv 516 (538)
++..++|++|+|++..+ -..+|++|++++..+..|+....++.-+-.++..++..+..
T Consensus 232 ~~~~vvRlfD~Flas~p----------------------l~piyv~A~vvL~r~~eIl~~~~dms~~H~lLs~iPq~lp~ 289 (395)
T KOG2595|consen 232 DIRIVVRLFDFFLASHP----------------------LLPIYVYAAVVLYRRSEILKCDCDMSLLHGLLSTIPQDLPY 289 (395)
T ss_pred hHHHHHHHHHHHHhcCc----------------------chhHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhCccccCH
Confidence 69999999999999875 57899999999999999999888888888899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 048384 517 WKLLDDAHDLVVTL 530 (538)
Q Consensus 517 ~~lL~~A~~L~~~~ 530 (538)
+.+|+.+..++.++
T Consensus 290 d~lik~s~~~i~~~ 303 (395)
T KOG2595|consen 290 DTLIKESVLLITRK 303 (395)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999987766543
No 16
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=99.83 E-value=1.6e-20 Score=199.65 Aligned_cols=179 Identities=25% Similarity=0.441 Sum_probs=152.2
Q ss_pred HHHhhhhhhcCCCCccCCCCchhhhHHHHhhhhhhcccCCCCCCChhhhhHHHHHHHHHHHHHhhCCCCCcccchhHhHH
Q 048384 278 RIIRLDAVRANSEWITYCPSQATVSEVRARRSAEAVGLKDYDHLEPCRIFHAARLVAILEAYALYDPEIGYCQGMSDLLS 357 (538)
Q Consensus 278 ~~I~~Dv~RT~~~~~~f~~~~~~~~~~~a~~~~e~~~l~d~~~~~~~~~~~~~~L~~IL~aya~~~pdvGY~QGMndLaa 357 (538)
.+| +|+.||+|.+..|.+.. ...++.|.+||.+|+.++|++||||||..+++
T Consensus 187 ~~~-~d~~Rt~~~~~~f~~~~---------------------------~~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~ 238 (397)
T KOG1102|consen 187 EII-RDLSRTFPAHLLFRKRY---------------------------GVGQRSLYNVLKAYSLYDPEVGYCQGMSSIAA 238 (397)
T ss_pred HHH-hhccCcCcchhhhhhhc---------------------------CcccccccccchhhcccCCCcccccchhhHhh
Confidence 357 99999999988886521 12345799999999999999999999999999
Q ss_pred HHHHHhccchHHHHHHHHHhhhh-cccCCCChhHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCcchhhHHHHHHhcCCCC
Q 048384 358 PITAVITEDHEAFWCFVGFMKKA-RHNFRLDEVGIRRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVVLFRREL 436 (538)
Q Consensus 358 ~lL~v~~~E~~aFw~f~~lm~~~-~~~f~~~~~gl~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~lF~rel 436 (538)
+++.++.+ ++|||.++.+|... .+.|.....+++..+..+..+++...|.++.|+...+++..+|...|++++|...+
T Consensus 239 ~ll~~~~e-e~af~~lv~l~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~ 317 (397)
T KOG1102|consen 239 PLLLYLPE-EEAFPLLVKLMKNYGLDLLSPGFSGLQRSFRQLQRLLKELIPKLLDHLLPQGIELSMYASQWFLTLFAAKF 317 (397)
T ss_pred hhhccCch-hhhhhhhhhhhhccchhcccccCCchhhhHHHHHHHHHHhChhhhhhccccccccceeccceeeEeeeccc
Confidence 99999995 59999999999974 44456667889999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhhhhhhhccccchhhhhccCCCCCchHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHhcc
Q 048384 437 SFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLKR-RKLIIEKYSSMDEILRECNSM 510 (538)
Q Consensus 437 p~~~vlrlWD~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~lf~iaa~ll~~-r~~iL~~~~d~deil~~ln~l 510 (538)
|++.++++||+++.+|. -+++.++.+++.. .+.++. .+++.+++++...
T Consensus 318 p~~~~~ri~d~~~~~g~-----------------------~i~~~~~~~l~~~~~~~~~~--~~~e~~~~~l~~~ 367 (397)
T KOG1102|consen 318 PLELVLRIWDALFVEGV-----------------------SILFRFSLALLKHKADDLLD--LDFESLLSYLRVD 367 (397)
T ss_pred cHHHHHHHhHHHHHhch-----------------------HHHHHHHHHHhhhhhHHHhh--ccHHHHHHHHhcc
Confidence 99999999999999984 2455566666654 455555 4599999998753
No 17
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=4.9e-18 Score=161.71 Aligned_cols=125 Identities=23% Similarity=0.395 Sum_probs=112.8
Q ss_pred HHHHHhhhhhhcCCCCccCCCCchhhhHHHHhhhhhhcccCCCCCCChhhhhHHHHHHHHHHHHHhhCCCCCcccchhHh
Q 048384 276 WQRIIRLDAVRANSEWITYCPSQATVSEVRARRSAEAVGLKDYDHLEPCRIFHAARLVAILEAYALYDPEIGYCQGMSDL 355 (538)
Q Consensus 276 ~~~~I~~Dv~RT~~~~~~f~~~~~~~~~~~a~~~~e~~~l~d~~~~~~~~~~~~~~L~~IL~aya~~~pdvGY~QGMndL 355 (538)
|...|++|++|-||.|.+|...+. .+.+.|.++|.+|..|+|+.||||+-.-|
T Consensus 142 t~e~i~kdl~rqfp~hemf~s~~k---------------------------~gkqelfr~lka~ti~~pe~g~cq~qapi 194 (267)
T KOG2221|consen 142 TAEGIHKDLHRQFPFHEMFGSSGK---------------------------TGKQELFRVLKAYTIYKPEEGYCQAQAPI 194 (267)
T ss_pred chhhhccccccCCCcccccccccc---------------------------cchHHHHHHHHHHHHhCchhhhhhhhchH
Confidence 566799999999999999976542 23457999999999999999999999999
Q ss_pred HHHHHHHhccchHHHHHHHHHhhhhccc-CCCChhHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCcchhhHHHH
Q 048384 356 LSPITAVITEDHEAFWCFVGFMKKARHN-FRLDEVGIRRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMV 428 (538)
Q Consensus 356 aa~lL~v~~~E~~aFw~f~~lm~~~~~~-f~~~~~gl~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~ 428 (538)
++++|+.++.+ +|||||+.+.+++.+. |..+...++.+-.++..|+++.+|..|.||....+++.+|...||
T Consensus 195 aa~llmhmp~r-daf~~~vqicekylqgy~~sgleaiq~dg~il~~Llkk~~~p~~rH~~~~kvdp~lym~ewF 267 (267)
T KOG2221|consen 195 AAVLLMHMPAR-DAFWCFVQICEKYLQGYYSSGLEAIQNDGGILEGLLKKASPPPYRHLGGDKVDPLLYMTEWF 267 (267)
T ss_pred HHHHHhcccHH-HHHHHHHHHHHHHcccccccchhhhhcccHHHHHHHHhcCCCCCcccccCCCCHHHhhhccC
Confidence 99999999987 9999999999996555 667778899999999999999999999999999999999999996
No 18
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=99.49 E-value=2.4e-15 Score=156.85 Aligned_cols=284 Identities=21% Similarity=0.311 Sum_probs=212.8
Q ss_pred CCCCCCHHHHHhhhccCCCCccchHHHHHHHHhCCCCcchHHHHHHHhhCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHH
Q 048384 72 RKLPLSPQQWRSLFTSDGKFRDGGVKFLKKVRSRGVDPSIRVEVWPFLLGVYDLNSTKEEREIIRTQKRKEYEKLRRECR 151 (538)
Q Consensus 72 r~~~l~~~~W~~~f~~~Gr~~~~~~~~lk~v~~gGi~p~iR~eVW~fLLGvy~~~st~eEr~~i~~~~r~~Y~~l~~~~~ 151 (538)
....||.+-|+.+..+. ....-.+++...+||.+..+|+.+||+++|-|...+...+-+.........|.+..-.|.
T Consensus 527 a~~glt~~~W~qy~~d~---t~~e~~~l~~~~~g~~e~~~r~~~~p~~~~~~~~g~~~~~~d~~e~~~s~~y~~~l~~~~ 603 (813)
T KOG1648|consen 527 ASAGLTEKFWKQYRADP---TIEEWRVLEAEVRGRDEEAFRAARAPKAASPVREGSCDVFEDPNEPTCSQHYDRNLITLF 603 (813)
T ss_pred ccccccHHHHHHHhcCC---chHHHHHHHHHHhcccHHHHhhcccccccccccccccchhcCCCccHHHHHHHHHHHHHH
Confidence 45569999999997643 223357899999999999999999999999999998888777777666777766544443
Q ss_pred HHhhcCCCCcccccccccccCCCCCCccccCCCCcchhhhhhhccccccccccCCcCCCCCccccccCCCCCCCCCCCch
Q 048384 152 RLLKRGNGSLKLKEISETGYSGDSGSVLQDTDTSSSEDVVSARESLSSEERSQDAEYSDDPSSILLDGKLSSDSDSSEDP 231 (538)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~ 231 (538)
.-
T Consensus 604 ~~------------------------------------------------------------------------------ 605 (813)
T KOG1648|consen 604 RA------------------------------------------------------------------------------ 605 (813)
T ss_pred hh------------------------------------------------------------------------------
Confidence 20
Q ss_pred hhhhcccCCCCCCCCCCCCCCCCCCCCchhhhhhhhhcchhhhHHHHHHhhhhhhcCCCCccCCCCchhhhHHHHhhhhh
Q 048384 232 EVIHAFSCSEDGEENNPDEAPNENIPLTNTEVRDKLRATEDFATWQRIIRLDAVRANSEWITYCPSQATVSEVRARRSAE 311 (538)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~I~~Dv~RT~~~~~~f~~~~~~~~~~~a~~~~e 311 (538)
-...|++|+.|.+++..+|+++.
T Consensus 606 --------------------------------------------~~~~~~kd~e~~~~~~~~fs~~~------------- 628 (813)
T KOG1648|consen 606 --------------------------------------------NLHRIDKDVERCDRNLMFFSNKD------------- 628 (813)
T ss_pred --------------------------------------------heeeecchhhhCcchheeecCCc-------------
Confidence 01247899999999988998653
Q ss_pred hcccCCCCCCChhhhhHHHHHHHHHHHHHhhCCCCCcccchhHhHHHHHHHhccchHHHHHHHHHhhhhcccCCCChhHH
Q 048384 312 AVGLKDYDHLEPCRIFHAARLVAILEAYALYDPEIGYCQGMSDLLSPITAVITEDHEAFWCFVGFMKKARHNFRLDEVGI 391 (538)
Q Consensus 312 ~~~l~d~~~~~~~~~~~~~~L~~IL~aya~~~pdvGY~QGMndLaa~lL~v~~~E~~aFw~f~~lm~~~~~~f~~~~~gl 391 (538)
+++. +++..+|...+-+-||.|||.||.+|++.-+++|+.+--||.-+|-.-+..|. ..+|+
T Consensus 629 ----------------~les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e~~s~~~~~q~~~~~-q~~~~ 690 (813)
T KOG1648|consen 629 ----------------NLES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLECFSLLMLRQRGKFP-QRPGM 690 (813)
T ss_pred ----------------chhh-heeeeeeeccccccccccchhhccCCcCCChhhcccccCCCcHHHHHhcccCC-CCCCc
Confidence 2223 77888999999999999999999999999999998888888888877665553 23455
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHhcCCCcchhhHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhhhhccccchhhhhccCC
Q 048384 392 RRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVVLFRRELSFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRA 471 (538)
Q Consensus 392 ~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~lF~relp~~~vlrlWD~~l~~g~~~~~~~~~~~~~~~~~~~ 471 (538)
...+-.++ +++..+|-. .-+. ...-..|+||+.-|.++++.+-...+|+++|+... .
T Consensus 691 ~~~l~~~r-~~~v~~~l~-s~id----~~qa~~f~~~~~~~~~~~s~~~~~~~~~~~~~~~~-----------------~ 747 (813)
T KOG1648|consen 691 SKCLLNLR-LIQVVDPLI-SDID----YAQALSFRWFLLDFKRELSYECTYKVWEVIWAAQR-----------------L 747 (813)
T ss_pred cccccccc-chhhhcchh-cchh----hhhhcceeeeccCcccccCCCCcceeeEeeccccc-----------------c
Confidence 55444444 667777722 1111 12345699999999999999999999999999762 1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHhhc
Q 048384 472 PPTDDLLLYAIAASVLKRRKLIIEKYSSMDEILRECNSMAGQLDVWKLLDDAHDLVVTLHDKIE 535 (538)
Q Consensus 472 ~~~~~~~lf~iaa~ll~~r~~iL~~~~d~deil~~ln~l~~~idv~~lL~~A~~L~~~~~~~i~ 535 (538)
.-++.+.+|+-.+ +-.+.+.++.+.-+..++++++|.+...-|.+.++.-|..-++.+++.+.
T Consensus 748 ~~~~~~~i~~g~~-~~~~~~~~~t~~~~~t~~i~~~~~~~e~~~c~r~~~~~~~~~~~l~~~~~ 810 (813)
T KOG1648|consen 748 RITDDFAIFFGLA-TTNYHDVLITNNFDYTDMIKFFNEMAERHDCSRLLSSARTHVKCLQNLVQ 810 (813)
T ss_pred ccCcchhhhhhhH-HHhhHHHHhhcccchHHHHHHHHHHHhhhhhHHHHhcCcchHHHHHHHHH
Confidence 1244666774443 46677888877677889999999998778888888877777777776654
No 19
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.36 E-value=1.4e-11 Score=135.42 Aligned_cols=187 Identities=16% Similarity=0.140 Sum_probs=155.9
Q ss_pred HHHhhhhhhcCCCCccCCCCchhhhHHHHhhhhhhcccCCCCCCChhhhhHHHHHHHHHHHHHhhCCCCCcccchhHhHH
Q 048384 278 RIIRLDAVRANSEWITYCPSQATVSEVRARRSAEAVGLKDYDHLEPCRIFHAARLVAILEAYALYDPEIGYCQGMSDLLS 357 (538)
Q Consensus 278 ~~I~~Dv~RT~~~~~~f~~~~~~~~~~~a~~~~e~~~l~d~~~~~~~~~~~~~~L~~IL~aya~~~pdvGY~QGMndLaa 357 (538)
-+|+.|+.||+++|.+|......+. ....+.++.|.|+..+|....-++|||||=+.+++
T Consensus 229 ~~Irrdi~~~~~eh~~fke~~s~~~--------------------~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~G 288 (948)
T KOG4436|consen 229 GIIRRDIERTYPEHYFFKEQSSTVC--------------------SDIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVG 288 (948)
T ss_pred HHHHHHhhccCcceeeeccCccCCc--------------------chhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHH
Confidence 4799999999999999975432110 11235688999999999999999999999999999
Q ss_pred HHHHHhccchHHHHHHHHHhhh--hcccCCCChhHHHHHHHHHHHHHHhhCH-HHHHHHHhcCCCcchhhHHHHHHhcCC
Q 048384 358 PITAVITEDHEAFWCFVGFMKK--ARHNFRLDEVGIRRQLSIVSKIIKVKDS-HLYRHLEKLQAEDCFFVYRMVVVLFRR 434 (538)
Q Consensus 358 ~lL~v~~~E~~aFw~f~~lm~~--~~~~f~~~~~gl~~~l~~l~~LL~~~dP-~L~~hL~~~~i~~~~f~~rW~l~lF~r 434 (538)
.+++.++.| .+|-.++.+|.. ++..|.+.+..+-..+..+....+...| .|+.|+.+...+..++.-.||++.|..
T Consensus 289 ll~l~~~~E-~assv~~~lm~~~rl~~l~kpe~~~l~~~~~q~e~~~q~~sp~dl~sH~~eq~~h~S~~~rs~flt~~lt 367 (948)
T KOG4436|consen 289 LLLLQMPVE-EASSVKVQLMILYRLRELSKPEMEPLGLCMFQLECTNQDQSPMDLFSHFPEQHFHTSMYARSWFLTNFLT 367 (948)
T ss_pred HHHhcCcHH-HHHHHHHHHHHhhcccccCCcccchhHHHHHhhcccccccchhHHhhcccccCCCccHHHHHHHHHhhcc
Confidence 999999987 999999999987 5556777777777778888999999999 999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhhhhhhhccccchhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHh
Q 048384 435 ELSFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLKRRKLIIEKYSSMDEILRECN 508 (538)
Q Consensus 435 elp~~~vlrlWD~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~lf~iaa~ll~~r~~iL~~~~d~deil~~ln 508 (538)
.||+...-++.|.|.++|. ...|....++++.+..+-....|++..+++++
T Consensus 368 t~Pi~~a~r~~~~f~~egl-----------------------lk~fr~~ia~~~~~~d~~~~s~D~EG~~~~~q 418 (948)
T KOG4436|consen 368 TFPIFMAARISDTFSSEGL-----------------------LKRFRDSIAYLHQLRDIELESLDMEGMLSYFQ 418 (948)
T ss_pred cCchhhccccccccccccH-----------------------HHHHhhhHHHHHHHhhhhhhccCccccccchh
Confidence 9999999999999999984 34556777777555554444578888877775
No 20
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=99.33 E-value=1e-11 Score=129.01 Aligned_cols=168 Identities=20% Similarity=0.328 Sum_probs=132.4
Q ss_pred HHHHHHHHHHhhCCCCCccc--chhHhHHHHHHHhccchHHHHHHHHHhhhhccc-CCCChhHHHHHHHHHHHHHHhhCH
Q 048384 331 RLVAILEAYALYDPEIGYCQ--GMSDLLSPITAVITEDHEAFWCFVGFMKKARHN-FRLDEVGIRRQLSIVSKIIKVKDS 407 (538)
Q Consensus 331 ~L~~IL~aya~~~pdvGY~Q--GMndLaa~lL~v~~~E~~aFw~f~~lm~~~~~~-f~~~~~gl~~~l~~l~~LL~~~dP 407 (538)
-|..++.-|+. +.++.|.. |.-.|+-||+.+-....+.|.||..++.++.+. -.+.. .-+..|+-||+.++|
T Consensus 94 dlES~iTfYCK-~Rn~~Y~~d~gWi~lL~pl~~L~lprsd~fN~F~ai~~kYIPkdcrpkg----~~Fh~FRLLlqYHdP 168 (669)
T KOG3636|consen 94 DLESFITFYCK-KRNMDYIKDIGWITLLEPLLLLNLPRSDEFNVFFAITTKYIPKDCRPKG----QIFHLFRLLLQYHDP 168 (669)
T ss_pred hhhhHhhhhhh-ccCCcccccccHHHHHHHHHHhcCCcchhhhhhHhhhhcccCCCCCCCC----ccchHHHHHHHhcCH
Confidence 48888888875 33445543 566788888887766679999999999986553 33322 246778899999999
Q ss_pred HHHHHHHhcCCCcchhhHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhhhhccccchhhhhccCCCCCchHHHHHHHHHHH
Q 048384 408 HLYRHLEKLQAEDCFFVYRMVVVLFRRELSFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVL 487 (538)
Q Consensus 408 ~L~~hL~~~~i~~~~f~~rW~l~lF~relp~~~vlrlWD~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~lf~iaa~ll 487 (538)
+|+.||....|.+.+|+..||-+||+...+.+.+.-|||.|+..++ .|++|+.+++||
T Consensus 169 elc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaD----------------------PF~vffLaliiL 226 (669)
T KOG3636|consen 169 ELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQAD----------------------PFLVFFLALIIL 226 (669)
T ss_pred HHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC----------------------ceehHHHHHHHh
Confidence 9999999999999999999999999999999999999999998875 667777777777
Q ss_pred H-HHHHHHHhC-CCHHHHHHHHhcccCCC---CHHHHHHHHHH
Q 048384 488 K-RRKLIIEKY-SSMDEILRECNSMAGQL---DVWKLLDDAHD 525 (538)
Q Consensus 488 ~-~r~~iL~~~-~d~deil~~ln~l~~~i---dv~~lL~~A~~ 525 (538)
. -++.||... .+-++++++|.+++..+ |+.++...|..
T Consensus 227 iNake~ILq~~sdsKEe~ikfLenmp~~L~~eDvpDffsLAqy 269 (669)
T KOG3636|consen 227 INAKEEILQVKSDSKEEAIKFLENMPAQLSVEDVPDFFSLAQY 269 (669)
T ss_pred cccHHHHhhhccccHHHHHHHHHcCchhcccccchhHHHHHHH
Confidence 6 577777643 44679999999998776 55556666643
No 21
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=1e-06 Score=88.04 Aligned_cols=177 Identities=15% Similarity=0.151 Sum_probs=128.9
Q ss_pred HHHHHHHHHHhhCCCCCcccchhHhHHHHHHHhccchHHHHHHHHHhhhhccc-CCCC--hhHHHHHHHHHHHHHHhhCH
Q 048384 331 RLVAILEAYALYDPEIGYCQGMSDLLSPITAVITEDHEAFWCFVGFMKKARHN-FRLD--EVGIRRQLSIVSKIIKVKDS 407 (538)
Q Consensus 331 ~L~~IL~aya~~~pdvGY~QGMndLaa~lL~v~~~E~~aFw~f~~lm~~~~~~-f~~~--~~gl~~~l~~l~~LL~~~dP 407 (538)
..+.||.+.++..|+|.||..+..+++.+|.+.-+|+++|---+.++.---+. -..+ .......+..|..++.++..
T Consensus 113 avrkilKOGanqfpdisfcpalpavvalllhysideaecfekacrilacndpgrrlidqsflafesscmtfgdlvnkycq 192 (559)
T KOG2801|consen 113 AVRKILLCLANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRILACNDPGRRLIDQSFLAFESSCMTFGDLVNKYCQ 192 (559)
T ss_pred hHHHHHHHHhccCCCcccCcchHHHHHHHHHhcccHHHHHHHhheeeeecCcchhhhhhHHHHHHhhhhhHHHHHHHHHH
Confidence 58999999999999999999999999999999999998887766665431111 0011 12344556677888888877
Q ss_pred HHHHHHHhcCCCcchhhHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhhhhccccchhhhhccCCCCCchHHHHHHHHHHH
Q 048384 408 HLYRHLEKLQAEDCFFVYRMVVVLFRRELSFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVL 487 (538)
Q Consensus 408 ~L~~hL~~~~i~~~~f~~rW~l~lF~relp~~~vlrlWD~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~lf~iaa~ll 487 (538)
..++.+....-+.......|-..+| .|+|+....|++|+|+.+|. -++|.++++|+
T Consensus 193 aahklmvavsedvlqvyadwqrwlf-gelplcyfarvfdvflvegy-----------------------kvlyrvalail 248 (559)
T KOG2801|consen 193 AAHKLMVAVSEDVLQVYADWQRWLF-GELPLCYFARVFDVFLVEGY-----------------------KVLYRVALAIL 248 (559)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHh-ccchHHHHHHHhhheeecch-----------------------HHHHHHHHHHH
Confidence 7776665443333444455665556 57999999999999999995 47999999999
Q ss_pred HHHHHHH-----HhCCCHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHH
Q 048384 488 KRRKLII-----EKYSSMDEILRECNSMAGQLDVWKLLDDAHDLVVTLH 531 (538)
Q Consensus 488 ~~r~~iL-----~~~~d~deil~~ln~l~~~idv~~lL~~A~~L~~~~~ 531 (538)
+.-.++- +...--.+|-.++.++......+++|.+|..+-.--+
T Consensus 249 kffhkvragqplesdsvkqdirtfvrdiaktvspekllekafairlfsr 297 (559)
T KOG2801|consen 249 KFFHKVRAGQPLESDSVKQDIRTFVRDIAKTVSPEKLLEKAFAIRLFSR 297 (559)
T ss_pred HHHHHhhcCCCCccchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhH
Confidence 8644443 2112223677788899989999999999987654333
No 22
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=98.34 E-value=4.3e-07 Score=99.31 Aligned_cols=80 Identities=28% Similarity=0.449 Sum_probs=72.2
Q ss_pred CCCHHHHHhhhccCCCCccchHHHHHHHHhCCCCcchHHHHHHHhhCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 048384 75 PLSPQQWRSLFTSDGKFRDGGVKFLKKVRSRGVDPSIRVEVWPFLLGVYDLNSTKEEREIIRTQKRKEYEKLRRECRRLL 154 (538)
Q Consensus 75 ~l~~~~W~~~f~~~Gr~~~~~~~~lk~v~~gGi~p~iR~eVW~fLLGvy~~~st~eEr~~i~~~~r~~Y~~l~~~~~~l~ 154 (538)
.++.++|......+|++... ...+.++++||+.+.+|++||||++++|+|++|.+||..+... ..+|..++.+|....
T Consensus 147 ~~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~qW~~~~ 224 (488)
T KOG2197|consen 147 SLTLEEYNSNAMREGRLDES-VHQRERIFSGGLSKSLRAEVWKFLLDYSPWDSTTRERVSLRKL-TDEYFRLKLQWSSTS 224 (488)
T ss_pred cchhhhhhhhhhhccccccc-hhhhheecccccccchhhhhhhhhhcccCcccccccccccccc-cccHhhhhhhheecc
Confidence 39999999999999999976 4455599999999999999999999999999999999999999 999999999997655
Q ss_pred hc
Q 048384 155 KR 156 (538)
Q Consensus 155 ~~ 156 (538)
..
T Consensus 225 ~~ 226 (488)
T KOG2197|consen 225 PE 226 (488)
T ss_pred cc
Confidence 43
No 23
>PF14961 BROMI: Broad-minded protein
Probab=96.36 E-value=0.095 Score=62.11 Aligned_cols=179 Identities=14% Similarity=0.136 Sum_probs=124.1
Q ss_pred HHHHHHHHHhhCCCCCcccchhHhHHHHHHHhccchHH-HHHHHHHhhhhcccC-----------CCC---hhHH----H
Q 048384 332 LVAILEAYALYDPEIGYCQGMSDLLSPITAVITEDHEA-FWCFVGFMKKARHNF-----------RLD---EVGI----R 392 (538)
Q Consensus 332 L~~IL~aya~~~pdvGY~QGMndLaa~lL~v~~~E~~a-Fw~f~~lm~~~~~~f-----------~~~---~~gl----~ 392 (538)
..+||..|..+.+.-+| .|..-.|+.+++++..+.+. .-.+..|-..+...| .+. ..|+ .
T Consensus 1086 ~l~~~~~~~~~~~~~~y-~g~DWFvstvfli~~Gd~e~~~~fL~~fS~ll~SaflW~pRlh~s~~l~~~~~~s~i~p~~~ 1164 (1296)
T PF14961_consen 1086 SLHILFEFIHFCLQGSY-PGHDWFVSTVFLIMLGDKERSLQFLQRFSRLLTSAFLWPPRLHASIHLPVDTAESGIHPVYF 1164 (1296)
T ss_pred hhHHHhhhhcccCCCCC-CCchhHHHHHHHHHcCChhHhHHHHHHHHHHHHHhHhccccccccccCCchhhhcCCCchhh
Confidence 34456666666666666 47777777777776443333 333222222211111 111 1222 3
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHhcCCCcchhhHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhhhhccccchhhhhccCCC
Q 048384 393 RQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVVLFRRELSFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAP 472 (538)
Q Consensus 393 ~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~lF~relp~~~vlrlWD~~l~~g~~~~~~~~~~~~~~~~~~~~ 472 (538)
..++.++.+|+...|.+|.-|...|..+...|.||+.-+|=.-|++.+++..-=+.+..|+
T Consensus 1165 ~~~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWnyldW~eI~~y~~~cil~G~------------------- 1225 (1296)
T PF14961_consen 1165 CSCHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWNYLDWPEICHYIAICILYGP------------------- 1225 (1296)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhcCc-------------------
Confidence 4678999999999999999999999999999999999999999999998877777777775
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhccc-CCCCHHHHHHHHHHHHHHHHHhh
Q 048384 473 PTDDLLLYAIAASVLKRRKLIIEKYSSMDEILRECNSMA-GQLDVWKLLDDAHDLVVTLHDKI 534 (538)
Q Consensus 473 ~~~~~~lf~iaa~ll~~r~~iL~~~~d~deil~~ln~l~-~~idv~~lL~~A~~L~~~~~~~i 534 (538)
++.+|+|+|++.+....||....+ -++.-+++.-+ ....+.+-+...+.|-.+|+..+
T Consensus 1226 ---dyqvY~~VailkHlq~~ilq~~q~-q~L~~flke~~l~gF~~~~~~~yM~~Le~~yR~~v 1284 (1296)
T PF14961_consen 1226 ---DYQVYICVAILKHLQPEILQHTQT-QDLQVFLKEEALRGFRVSDYLEYMENLEQRYRPRV 1284 (1296)
T ss_pred ---cceeehhHHHHHHhhHHHHHhhhh-chHHHHhhhccccceeHHhHHHHHHHHHHHhHhHH
Confidence 788999999999999999986533 34555665433 35677777777777777776543
No 24
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=89.65 E-value=0.12 Score=54.78 Aligned_cols=35 Identities=49% Similarity=1.063 Sum_probs=32.7
Q ss_pred CCCcccchhHhHHHHHHHhccchHHHHHHHHHhhh
Q 048384 345 EIGYCQGMSDLLSPITAVITEDHEAFWCFVGFMKK 379 (538)
Q Consensus 345 dvGY~QGMndLaa~lL~v~~~E~~aFw~f~~lm~~ 379 (538)
-||..|||+|++||+|.-..+|.++||||++||++
T Consensus 565 fvglmqgmsdlvapilaevldesdtfwcfvglmqn 599 (781)
T KOG2224|consen 565 FVGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQN 599 (781)
T ss_pred hhhhhccchhhhhhHHHhhhccccchhhhhhhhcc
Confidence 37889999999999999999999999999999996
No 25
>KOG4631 consensus NADH:ubiquinone oxidoreductase, NDUFB3/B12 subunit [Energy production and conversion]
Probab=37.55 E-value=24 Score=30.00 Aligned_cols=25 Identities=36% Similarity=0.643 Sum_probs=20.5
Q ss_pred HHHHHHHHhCCC-CcchHHHHHHHhh
Q 048384 96 VKFLKKVRSRGV-DPSIRVEVWPFLL 120 (538)
Q Consensus 96 ~~~lk~v~~gGi-~p~iR~eVW~fLL 120 (538)
++..|++..-|+ ||=+|.|||+|-=
T Consensus 26 ~~~~k~La~~GLkDPW~RNevwrY~~ 51 (100)
T KOG4631|consen 26 ETIQKKLAAKGLKDPWGRNEVWRYMG 51 (100)
T ss_pred HHHHHHHHHccccCchhcchhhhccC
Confidence 456788887788 8999999998864
No 26
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=35.48 E-value=54 Score=37.71 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=9.5
Q ss_pred HHHHhCCCCcchHHH
Q 048384 100 KKVRSRGVDPSIRVE 114 (538)
Q Consensus 100 k~v~~gGi~p~iR~e 114 (538)
+-+ .||+..+.|+.
T Consensus 1320 ~D~-v~Gtsasfrav 1333 (1463)
T PHA03308 1320 ADI-VGGTSASFRAV 1333 (1463)
T ss_pred hhh-hcCcchhHHHH
Confidence 344 67888887764
No 27
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=29.63 E-value=33 Score=39.32 Aligned_cols=16 Identities=25% Similarity=0.221 Sum_probs=9.9
Q ss_pred hHHHHHHHhhCCCCCC
Q 048384 111 IRVEVWPFLLGVYDLN 126 (538)
Q Consensus 111 iR~eVW~fLLGvy~~~ 126 (538)
|-.||-+.+-.|||-.
T Consensus 1357 ipqevlriisdyypda 1372 (1463)
T PHA03308 1357 IPQEVLRIISDYYPDA 1372 (1463)
T ss_pred chHHHHHHHhhhCCCC
Confidence 5666666666666643
No 28
>PF08109 Antimicrobial14: Lactocin 705 family; InterPro: IPR012517 This family consists of lactocin 705 which is a bacteriocin produced by Lactobacillus casei CRL 705. Lactocin 705 is a class IIb bacteriocin, whose activity depends upon the complementation of two peptides (705-alpha and 705-beta) of 33 amino acid residues each. Lactocin 705 is active against several Gram-positive bacteria, including food-borne pathogens and is a good candidate to be used for biopreservation of fermented meats [].
Probab=28.04 E-value=38 Score=22.17 Aligned_cols=15 Identities=40% Similarity=0.687 Sum_probs=11.0
Q ss_pred CCcccchhHhHHHHH
Q 048384 346 IGYCQGMSDLLSPIT 360 (538)
Q Consensus 346 vGY~QGMndLaa~lL 360 (538)
-||.||+.|.+--.|
T Consensus 3 sgyiqgipdflkgyl 17 (31)
T PF08109_consen 3 SGYIQGIPDFLKGYL 17 (31)
T ss_pred cccccccHHHHHHHH
Confidence 489999988765444
No 29
>COG3860 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.77 E-value=2.1e+02 Score=24.07 Aligned_cols=59 Identities=24% Similarity=0.411 Sum_probs=42.3
Q ss_pred HHhhhccCCCCccchHHHHHHHHhCCCCcchHHHHHHHhhCCCCCCC--CHHHHHHHHHHhHHHHHHHHHHH
Q 048384 81 WRSLFTSDGKFRDGGVKFLKKVRSRGVDPSIRVEVWPFLLGVYDLNS--TKEEREIIRTQKRKEYEKLRREC 150 (538)
Q Consensus 81 W~~~f~~~Gr~~~~~~~~lk~v~~gGi~p~iR~eVW~fLLGvy~~~s--t~eEr~~i~~~~r~~Y~~l~~~~ 150 (538)
-+++|+.+||+.+-..+-+|++ -|-++||+-+...- |+.|-..+..+-...|..+++..
T Consensus 10 ikn~~~~~~rlk~iPAqrKKkl-----------ivLk~ll~~fe~~r~YsEkeVN~ii~ryh~DyaTvRRel 70 (89)
T COG3860 10 IKNFFLKNGRLKDIPAQRKKKL-----------IVLKHLLKNFENERQYSEKEVNLIIKRYHPDYATVRREL 70 (89)
T ss_pred HHHhhcCCCchhccchhhhhhh-----------hhHHHHHhhcccccccCHHHHHHHHHHhCchHHHHHHHH
Confidence 4678899999987655555543 36678888766543 56667777788888899998863
No 30
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=22.22 E-value=1.8e+02 Score=22.45 Aligned_cols=40 Identities=13% Similarity=0.046 Sum_probs=33.6
Q ss_pred HHHHHHHhhCHHHHHHHHhcCCCcchhhHHHHHHhcCCCC
Q 048384 397 IVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVVLFRREL 436 (538)
Q Consensus 397 ~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~lF~rel 436 (538)
.|..+-.++.|+--+.|++.||+...-.+.-|+.||....
T Consensus 5 ~FmqIaMK~lPEak~~L~k~GIeLsme~~qP~m~L~~~VM 44 (56)
T PF10815_consen 5 EFMQIAMKYLPEAKEELDKKGIELSMEMLQPLMQLLTKVM 44 (56)
T ss_pred HHHHHHHHHhHHHHHHHHHcCccCCHHHHHHHHHHHHHHH
Confidence 3566778899999999999999999988898988887643
Done!