Query 048384
Match_columns 538
No_of_seqs 308 out of 1824
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 15:35:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048384.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048384hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qfz_A TBC1 domain family memb 100.0 1.4E-50 4.8E-55 421.8 27.8 287 77-533 25-339 (345)
2 1fkm_A Protein (GYP1P), ORF YO 100.0 5.4E-50 1.9E-54 424.9 29.1 306 78-534 8-386 (396)
3 2qq8_A TBC1 domain family memb 100.0 3.8E-48 1.3E-52 402.0 28.6 200 276-528 109-310 (334)
4 3qye_A TBC1 domain family memb 100.0 7.3E-48 2.5E-52 399.0 16.8 200 277-527 104-308 (331)
5 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 8.2E-46 2.8E-50 380.4 18.8 198 277-526 70-274 (310)
6 4hl4_A TBC1 domain family memb 100.0 8.3E-45 2.8E-49 370.2 22.0 205 277-530 83-289 (292)
7 3qwl_A TBC1 domain family memb 100.0 6.4E-38 2.2E-42 319.2 26.3 158 348-532 131-288 (294)
8 1r6x_A ATP:sulfate adenylyltra 28.7 38 0.0013 35.1 3.8 36 90-125 352-389 (395)
9 3kev_A Galieria sulfuraria DCU 18.7 1.8E+02 0.0063 27.0 6.1 57 387-452 76-132 (199)
10 4gba_A DCN1-like protein 3; E3 17.4 1.3E+02 0.0043 28.6 4.6 55 388-451 76-132 (221)
No 1
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=1.4e-50 Score=421.80 Aligned_cols=287 Identities=22% Similarity=0.381 Sum_probs=240.8
Q ss_pred CHHHHHhhhccCCCCccchHHHHHHHHhCCCCcchHHHHHHHhhCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHhhc
Q 048384 77 SPQQWRSLFTSDGKFRDGGVKFLKKVRSRGVDPSIRVEVWPFLLGVYDLNSTKEEREIIRTQKRKEYEKLRRECRRLLKR 156 (538)
Q Consensus 77 ~~~~W~~~f~~~Gr~~~~~~~~lk~v~~gGi~p~iR~eVW~fLLGvy~~~st~eEr~~i~~~~r~~Y~~l~~~~~~l~~~ 156 (538)
..++|.++++.. ..+. .++++.+ ++||++++|+.||++|||++|.+. ++|..+.++++.+|.+++++|......
T Consensus 25 r~~kw~~~l~~~--~~d~-~~Lr~l~-~~GiP~~~R~~vW~~llg~~p~~~--~~~~~~l~~~~~~Y~~l~~~~~~~~~~ 98 (345)
T 2qfz_A 25 RLDKFKQLLAGP--NTDL-EELRRLS-WSGIPKPVRPMTWKLLSGYLPANV--DRRPATLQRKQKEYFAFIEHYYDSRND 98 (345)
T ss_dssp HHHHHHHHHHCS--BCCH-HHHHHHH-TTCCCGGGHHHHHHHHTTSSCSBG--GGHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHcCC--CCCH-HHHHHHH-HCCCCHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 358999999854 3443 4566655 588999999999999999999865 578888899999999999986321000
Q ss_pred CCCCcccccccccccCCCCCCccccCCCCcchhhhhhhccccccccccCCcCCCCCccccccCCCCCCCCCCCchhhhhc
Q 048384 157 GNGSLKLKEISETGYSGDSGSVLQDTDTSSSEDVVSARESLSSEERSQDAEYSDDPSSILLDGKLSSDSDSSEDPEVIHA 236 (538)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~ 236 (538)
T Consensus 99 -------------------------------------------------------------------------------- 98 (345)
T 2qfz_A 99 -------------------------------------------------------------------------------- 98 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCchhhhhhhhhcchhhhHHHHHHhhhhhhcCCCCccCCCCchhhhHHHHhhhhhhcccC
Q 048384 237 FSCSEDGEENNPDEAPNENIPLTNTEVRDKLRATEDFATWQRIIRLDAVRANSEWITYCPSQATVSEVRARRSAEAVGLK 316 (538)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~I~~Dv~RT~~~~~~f~~~~~~~~~~~a~~~~e~~~l~ 316 (538)
+......++|++||.||+|+ ++|+..
T Consensus 99 ----------------------------------~~~~~~~~~I~~Dv~RT~p~-~~F~~~------------------- 124 (345)
T 2qfz_A 99 ----------------------------------EVHQDTYRQIHIDIPRMSPE-ALILQP------------------- 124 (345)
T ss_dssp ------------------------------------CHHHHHHHHHHGGGCSCH-HHHTSH-------------------
T ss_pred ----------------------------------cchHHHHHHHHHhCcccCCc-cccCCc-------------------
Confidence 00012357899999999999 888742
Q ss_pred CCCCCChhhhhHHHHHHHHHHHHHhhCCCCCcccchhHhHHHHHHHhcc------------------------chHHHHH
Q 048384 317 DYDHLEPCRIFHAARLVAILEAYALYDPEIGYCQGMSDLLSPITAVITE------------------------DHEAFWC 372 (538)
Q Consensus 317 d~~~~~~~~~~~~~~L~~IL~aya~~~pdvGY~QGMndLaa~lL~v~~~------------------------E~~aFw~ 372 (538)
..++.|++||.+|+.+||++|||||||+||||||+++.. |++||||
T Consensus 125 ----------~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~ 194 (345)
T 2qfz_A 125 ----------KVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWC 194 (345)
T ss_dssp ----------HHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHH
T ss_pred ----------hHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHH
Confidence 134579999999999999999999999999999998742 7899999
Q ss_pred HHHHhhhhcccCCCChhHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCcchhhHHHHHHhcCCCCCHHHHHHHHHHHHhhh
Q 048384 373 FVGFMKKARHNFRLDEVGIRRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVVLFRRELSFEQTLCLWEVMWADQ 452 (538)
Q Consensus 373 f~~lm~~~~~~f~~~~~gl~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~lF~relp~~~vlrlWD~~l~~g 452 (538)
|+++|++++++|..+++|++..+..+..+|+.++|+||+||++.++.+.+|+++||+++|+++||+++++||||++|++|
T Consensus 195 f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g 274 (345)
T 2qfz_A 195 MSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEP 274 (345)
T ss_dssp HHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTST
T ss_pred HHHHHHccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCC
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhccccchhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcccCC----CCHHHHHHHHHHHHH
Q 048384 453 AAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLKRRKLIIEKYSSMDEILRECNSMAGQ----LDVWKLLDDAHDLVV 528 (538)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~lf~iaa~ll~~r~~iL~~~~d~deil~~ln~l~~~----idv~~lL~~A~~L~~ 528 (538)
..+ ..+++|+++|+|+..++.||. +.++++++++|++++.. .|++.++..|..|..
T Consensus 275 ~~~-------------------~~~~~~v~~AiL~~~~~~ll~-~~d~~~il~~L~~~p~~~~~~~di~~ll~~A~~l~~ 334 (345)
T 2qfz_A 275 DGF-------------------SHFHLYVCAAFLVRWRKEILE-EKDFQELLLFLQNLPTAHWDDEDISLLLAEAYRLKF 334 (345)
T ss_dssp TTT-------------------TTHHHHHHHHHHHHTHHHHHH-CCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCh-------------------hHHHHHHHHHHHHHHHHHHHh-hCCHHHHHHHHHcCCCcCCchhHHHHHHHHHHHHHH
Confidence 521 236788888888888988886 47999999999999865 379999999999988
Q ss_pred HHHHh
Q 048384 529 TLHDK 533 (538)
Q Consensus 529 ~~~~~ 533 (538)
+++..
T Consensus 335 ~~~~~ 339 (345)
T 2qfz_A 335 AFADA 339 (345)
T ss_dssp HC---
T ss_pred HHHhh
Confidence 87654
No 2
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=5.4e-50 Score=424.88 Aligned_cols=306 Identities=21% Similarity=0.351 Sum_probs=243.5
Q ss_pred HHHHHhhhccCCCCccchHHHHHHHHhCCCCcchHHHHHHHhhCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHhhcC
Q 048384 78 PQQWRSLFTSDGKFRDGGVKFLKKVRSRGVDPSIRVEVWPFLLGVYDLNSTKEEREIIRTQKRKEYEKLRRECRRLLKRG 157 (538)
Q Consensus 78 ~~~W~~~f~~~Gr~~~~~~~~lk~v~~gGi~p~iR~eVW~fLLGvy~~~st~eEr~~i~~~~r~~Y~~l~~~~~~l~~~~ 157 (538)
.++|..+++..+ ..+. .++++ +.++||++++|+.||++|||++|.+.+ +|+.+.++++.+|.+|+++|..- .
T Consensus 8 ~~kw~~lL~~~~-~~d~-~~Lr~-l~~~GIP~~lR~~vW~~LLg~~~~~~~--~~~~~l~~~~~~Y~~l~~~~~~~--~- 79 (396)
T 1fkm_A 8 ISKFDNILKDKT-IINQ-QDLRQ-ISWNGIPKIHRPVVWKLLIGYLPVNTK--RQEGFLQRKRKEYRDSLKHTFSD--Q- 79 (396)
T ss_dssp HHHHHHHHSSCS-BCCH-HHHHH-HHTTCCCGGGHHHHHHHHTTCSCSBGG--GHHHHHHHHHHHHHHHHHHTSSS--S-
T ss_pred HHHHHHHHcCCC-CCCH-HHHHH-HHHcCCCHHHHHHHHHHHHCCCCCChh--HHHHHHHHHHHHHHHHHHHHhhc--c-
Confidence 479999999764 2332 45555 555799999999999999999999864 67888999999999999886210 0
Q ss_pred CCCcccccccccccCCCCCCccccCCCCcchhhhhhhccccccccccCCcCCCCCccccccCCCCCCCCCCCchhhhhcc
Q 048384 158 NGSLKLKEISETGYSGDSGSVLQDTDTSSSEDVVSARESLSSEERSQDAEYSDDPSSILLDGKLSSDSDSSEDPEVIHAF 237 (538)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~ 237 (538)
.
T Consensus 80 ~------------------------------------------------------------------------------- 80 (396)
T 1fkm_A 80 H------------------------------------------------------------------------------- 80 (396)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred cCCCCCCCCCCCCCCCCCCCCchhhhhhhhhcchhhhHHHHHHhhhhhhcCCCCccCCCCchhhhHHHHhhhhhhcccCC
Q 048384 238 SCSEDGEENNPDEAPNENIPLTNTEVRDKLRATEDFATWQRIIRLDAVRANSEWITYCPSQATVSEVRARRSAEAVGLKD 317 (538)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~I~~Dv~RT~~~~~~f~~~~~~~~~~~a~~~~e~~~l~d 317 (538)
+......++|++||.||+|++++|+..
T Consensus 81 ---------------------------------~~~~~~~~qI~~Dv~RT~p~~~~F~~~-------------------- 107 (396)
T 1fkm_A 81 ---------------------------------SRDIPTWHQIEIDIPRTNPHIPLYQFK-------------------- 107 (396)
T ss_dssp ---------------------------------STHHHHHHHHHHHGGGSSTTSGGGGSH--------------------
T ss_pred ---------------------------------cccHHHHHHHHHHhhhhCCCcccccCc--------------------
Confidence 001123578999999999999999742
Q ss_pred CCCCChhhhhHHHHHHHHHHHHHhhCCCCCcccchhHhHHHHHHHhc------------------c----------chHH
Q 048384 318 YDHLEPCRIFHAARLVAILEAYALYDPEIGYCQGMSDLLSPITAVIT------------------E----------DHEA 369 (538)
Q Consensus 318 ~~~~~~~~~~~~~~L~~IL~aya~~~pdvGY~QGMndLaa~lL~v~~------------------~----------E~~a 369 (538)
..++.|++||.+|+.+||++|||||||+||+|||+++. + |++|
T Consensus 108 ---------~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~da 178 (396)
T 1fkm_A 108 ---------SVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADT 178 (396)
T ss_dssp ---------HHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHH
T ss_pred ---------hHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHH
Confidence 24568999999999999999999999999999999862 1 7899
Q ss_pred HHHHHHHhhhhcccCCCChhHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCcchhhHHHHHHhcCCCCCHHHHHHHHHHHH
Q 048384 370 FWCFVGFMKKARHNFRLDEVGIRRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVVLFRRELSFEQTLCLWEVMW 449 (538)
Q Consensus 370 Fw~f~~lm~~~~~~f~~~~~gl~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~lF~relp~~~vlrlWD~~l 449 (538)
||||++||+++.++|..+++|++..+..++.||+.++|+||+||+++++.+.+|+++||+++|+++||+++++||||+||
T Consensus 179 F~~f~~lm~~~~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l 258 (396)
T 1fkm_A 179 FWCLTKLLEQITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYL 258 (396)
T ss_dssp HHHHHHHHGGGGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhh-c-------ccc---chhhhhccCC---------------------C---------CCchHHHHHHHHHHHH
Q 048384 450 ADQAAIRA-G-------IGK---SAWSRIRQRA---------------------P---------PTDDLLLYAIAASVLK 488 (538)
Q Consensus 450 ~~g~~~~~-~-------~~~---~~~~~~~~~~---------------------~---------~~~~~~lf~iaa~ll~ 488 (538)
++|..... + .|. .+=..+.... . +...+++|+|+|+|..
T Consensus 259 ~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~AlL~~ 338 (396)
T 1fkm_A 259 SETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIK 338 (396)
T ss_dssp HHHC------------------------------------------------------------CHHHHHHHHHHHHHHH
T ss_pred HCCCccccchhhhhcccccCCccccccccccccccccccccccccccccccccccccchhccccchHHHHHHHHHHHHHH
Confidence 99810000 0 000 0000000000 0 1136788988888888
Q ss_pred HHHHHHHhCCCHHHHHHHHhcccCC----CCHHHHHHHHHHHHHHHHHhh
Q 048384 489 RRKLIIEKYSSMDEILRECNSMAGQ----LDVWKLLDDAHDLVVTLHDKI 534 (538)
Q Consensus 489 ~r~~iL~~~~d~deil~~ln~l~~~----idv~~lL~~A~~L~~~~~~~i 534 (538)
.|+.||. .|+++++++|++++.. .|++.+|..|..+...|+...
T Consensus 339 ~r~~Ll~--~df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~~~ 386 (396)
T 1fkm_A 339 WSDQLME--MDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQSLYKDAT 386 (396)
T ss_dssp THHHHTT--CCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHh--cCHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHHHhccH
Confidence 9999887 7999999999999864 589999999998888776543
No 3
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.8e-48 Score=402.04 Aligned_cols=200 Identities=18% Similarity=0.307 Sum_probs=177.9
Q ss_pred HHHHHhhhhhhcCCCCccCCCCchhhhHHHHhhhhhhcccCCCCCCChhhhhHHHHHHHHHHHHHhhCCCCCcccchhHh
Q 048384 276 WQRIIRLDAVRANSEWITYCPSQATVSEVRARRSAEAVGLKDYDHLEPCRIFHAARLVAILEAYALYDPEIGYCQGMSDL 355 (538)
Q Consensus 276 ~~~~I~~Dv~RT~~~~~~f~~~~~~~~~~~a~~~~e~~~l~d~~~~~~~~~~~~~~L~~IL~aya~~~pdvGY~QGMndL 355 (538)
..++|++||.||+|++++|+... .+++.|++||.+|+.+||++|||||||+|
T Consensus 109 ~~~~I~~Dv~RT~p~~~~F~~~~----------------------------~~~~~L~rIL~aya~~~p~vgY~QGm~~i 160 (334)
T 2qq8_A 109 SLELIKLDISRTFPNLCIFQQGG----------------------------PYHDMLHSILGAYTCYRPDVGYVQGMSFI 160 (334)
T ss_dssp HHHHHHHHHHTSSGGGCSSSTTS----------------------------TTHHHHHHHHHHHHHHCTTTCCCTTHHHH
T ss_pred HHHHHHHHHhhcCCCchhhcCCC----------------------------chHHHHHHHHHHHHHhCCCCCcchhHHHH
Confidence 46799999999999999997431 23568999999999999999999999999
Q ss_pred HHHHHHHhccchHHHHHHHHHhhhh--cccCCCChhHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCcchhhHHHHHHhcC
Q 048384 356 LSPITAVITEDHEAFWCFVGFMKKA--RHNFRLDEVGIRRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVVLFR 433 (538)
Q Consensus 356 aa~lL~v~~~E~~aFw~f~~lm~~~--~~~f~~~~~gl~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~lF~ 433 (538)
||+||+++++ ++|||||++||++. ..+|..+.++++..+..++.+|+.++|+||+||++.++.+.+|+++||+++|+
T Consensus 161 aa~lLl~~~E-~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~ 239 (334)
T 2qq8_A 161 AAVLILNLDT-ADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYS 239 (334)
T ss_dssp HHHHHHHSCH-HHHHHHHHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTT
T ss_pred HHHHHhcCCH-HHHHHHHHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhc
Confidence 9999999875 59999999999985 34577788899999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhhhhhhhccccchhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcccCC
Q 048384 434 RELSFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLKRRKLIIEKYSSMDEILRECNSMAGQ 513 (538)
Q Consensus 434 relp~~~vlrlWD~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~lf~iaa~ll~~r~~iL~~~~d~deil~~ln~l~~~ 513 (538)
++||++.++||||+||++|. .+++++++|+|...++.|+. .+++++++++++++..
T Consensus 240 ~~lp~~~~lriWD~~l~eg~----------------------~~l~~valaiL~~~~~~Ll~--~d~~~il~~L~~lp~~ 295 (334)
T 2qq8_A 240 KSLPLDLACRIWDVFCRDGE----------------------EFLFRTALGILKLFEDILTK--MDFIHMAQFLTRLPED 295 (334)
T ss_dssp TTSCHHHHHHHHHHHHHHCH----------------------HHHHHHHHHHHHHTHHHHHT--CCHHHHHHHHHSCCTT
T ss_pred ccCCHHHHHHHHHHHHHcCC----------------------HHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHhCCCc
Confidence 99999999999999999985 45666565555567777776 6899999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 048384 514 LDVWKLLDDAHDLVV 528 (538)
Q Consensus 514 idv~~lL~~A~~L~~ 528 (538)
+|++.++..|..|..
T Consensus 296 ~d~~~l~~~a~~l~~ 310 (334)
T 2qq8_A 296 LPAEELFASIATIQM 310 (334)
T ss_dssp CCHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHccC
Confidence 999999999987754
No 4
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=7.3e-48 Score=399.03 Aligned_cols=200 Identities=20% Similarity=0.331 Sum_probs=175.0
Q ss_pred HHHHhhhhhhcCCCCccCCCCchhhhHHHHhhhhhhcccCCCCCCChhhhhHHHHHHHHHHHHHhhCCCCCcccchhHhH
Q 048384 277 QRIIRLDAVRANSEWITYCPSQATVSEVRARRSAEAVGLKDYDHLEPCRIFHAARLVAILEAYALYDPEIGYCQGMSDLL 356 (538)
Q Consensus 277 ~~~I~~Dv~RT~~~~~~f~~~~~~~~~~~a~~~~e~~~l~d~~~~~~~~~~~~~~L~~IL~aya~~~pdvGY~QGMndLa 356 (538)
.++|++||.||+|++++|.... ..+++.|++||.+|+.+||++|||||||+||
T Consensus 104 ~~~I~~Dv~Rt~~~~~~f~~~~---------------------------~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~ 156 (331)
T 3qye_A 104 QHAILIDLGRTFPTHPYFSAQL---------------------------GAGQLSLYNILKAYSLLDQEVGYCQGLSFVA 156 (331)
T ss_dssp HHHHHHHHTTSSTTSTTTCSTT---------------------------CHHHHHHHHHHHHHHHHCTTTSSCTTHHHHH
T ss_pred hhHHHHhhcccCCCchhhcCCC---------------------------cccHHHHHHHHHHHHHHCCCccccccHHHHH
Confidence 3589999999999999997542 1356789999999999999999999999999
Q ss_pred HHHHHHhccchHHHHHHHHHhhh--hcccCCCChhHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCcchhhHHHHHHhcCC
Q 048384 357 SPITAVITEDHEAFWCFVGFMKK--ARHNFRLDEVGIRRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVVLFRR 434 (538)
Q Consensus 357 a~lL~v~~~E~~aFw~f~~lm~~--~~~~f~~~~~gl~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~lF~r 434 (538)
|+||+++++ ++|||||+.+|.. +..+|.++..+++..+..+..+|+.++|+||+||++.++.+.+|+++||+++|++
T Consensus 157 a~ll~~~~E-~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~ 235 (331)
T 3qye_A 157 GILLLHMSE-EEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFAS 235 (331)
T ss_dssp HHHHTTSCH-HHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTT
T ss_pred HHHHHHhhH-HHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhh
Confidence 999999865 5999999999987 5677889999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhhhhhhhccccchhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcccCCC
Q 048384 435 ELSFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLKRRKLIIEKYSSMDEILRECNSMAGQL 514 (538)
Q Consensus 435 elp~~~vlrlWD~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~lf~iaa~ll~~r~~iL~~~~d~deil~~ln~l~~~i 514 (538)
+||++.++||||+||++|. .+++++++|++...++.|+. +.+++++++++++....+
T Consensus 236 ~lp~~~~lrlwD~~l~~g~----------------------~~l~~valaiL~~~~~~ll~-~~~~~~il~~l~~~~p~~ 292 (331)
T 3qye_A 236 QFPLGFVARVFDMIFLQGT----------------------EVIFKVALSLLGSHKPLILQ-HENLETIVDFIKSTLPNL 292 (331)
T ss_dssp TSCHHHHHHHHHHHHHHCT----------------------THHHHHHHHHHHHTHHHHHT-CCSHHHHHHHHHHTTTCC
T ss_pred hCCHHHHHHHHHHHHHCCc----------------------HHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHhhCCCC
Confidence 9999999999999999985 45666666666667777776 469999999999855555
Q ss_pred ---CHHHHHHHHHHHH
Q 048384 515 ---DVWKLLDDAHDLV 527 (538)
Q Consensus 515 ---dv~~lL~~A~~L~ 527 (538)
|++.++..|..+.
T Consensus 293 ~~~di~~li~~A~~l~ 308 (331)
T 3qye_A 293 GLVQMEKTINQVFEMD 308 (331)
T ss_dssp CHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhCC
Confidence 7888888886543
No 5
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.2e-46 Score=380.43 Aligned_cols=198 Identities=17% Similarity=0.318 Sum_probs=174.2
Q ss_pred HHHHhhhhhhcCCCCccCCCCchhhhHHHHhhhhhhcccCCCCCCChhhhhHHHHHHHHHHHHHhhCCCCCcccchhHhH
Q 048384 277 QRIIRLDAVRANSEWITYCPSQATVSEVRARRSAEAVGLKDYDHLEPCRIFHAARLVAILEAYALYDPEIGYCQGMSDLL 356 (538)
Q Consensus 277 ~~~I~~Dv~RT~~~~~~f~~~~~~~~~~~a~~~~e~~~l~d~~~~~~~~~~~~~~L~~IL~aya~~~pdvGY~QGMndLa 356 (538)
.++|++||.||+|++++|.... ..+++.|++||.+|+.+||++|||||||+||
T Consensus 70 ~~~I~~Dv~Rt~p~~~~f~~~~---------------------------~~~~~~L~~IL~ay~~~~p~igY~QGm~~ia 122 (310)
T 3hzj_A 70 ESVITRDIHRTFPAHDYFKDTG---------------------------GDGQESLYKICKAYSVYDEDIGYCQGQSFLA 122 (310)
T ss_dssp HHHHHHHHTTSSTTSTTTSSTT---------------------------SHHHHHHHHHHHHHHHHCTTTCSCTTHHHHH
T ss_pred HHHHHHHHHhhCCCchhhcCCC---------------------------chhHHHHHHHHHHHHHHCCCCCccCCHHHHH
Confidence 3579999999999999997542 1356789999999999999999999999999
Q ss_pred HHHHHHhccchHHHHHHHHHhhh--hcccCCCChhHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCcchhhHHHHHHhcCC
Q 048384 357 SPITAVITEDHEAFWCFVGFMKK--ARHNFRLDEVGIRRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVVLFRR 434 (538)
Q Consensus 357 a~lL~v~~~E~~aFw~f~~lm~~--~~~~f~~~~~gl~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~lF~r 434 (538)
|+||+++++ ++|||||+++|.. +++.|..+.++++..+..++.+|+.++|+||+||++.++.+.+|+++||+++|++
T Consensus 123 a~lL~~~~e-~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF~~ 201 (310)
T 3hzj_A 123 AVLLLHMPE-EQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTA 201 (310)
T ss_dssp HHHHHHSCH-HHHHHHHHHHHHTSCGGGGTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGTSHHHHHHTTTT
T ss_pred HHHHHhCCH-HHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHhChHHHHHHHHcCCChHHHHHHHHHHHHhc
Confidence 999999964 5999999999987 6677878888999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhhhhhhhccccchhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHh-cccC-
Q 048384 435 ELSFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLKRRKLIIEKYSSMDEILRECN-SMAG- 512 (538)
Q Consensus 435 elp~~~vlrlWD~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~lf~iaa~ll~~r~~iL~~~~d~deil~~ln-~l~~- 512 (538)
+||++.++||||++|++|. .+++++++|++...++.|+. .++++++++++ .++.
T Consensus 202 ~lp~~~~~riwD~~l~~g~----------------------~~l~~v~lail~~~~~~Ll~--~d~~~~l~~l~~~lp~~ 257 (310)
T 3hzj_A 202 KFPLCMVFHIIDLLLCEGL----------------------NIIFHVALALLKTSKEDLLQ--ADFEGALKFFRVQLPKR 257 (310)
T ss_dssp TSCHHHHHHHHHHHHHHCT----------------------THHHHHHHHHHHHTHHHHHT--CCHHHHHHHHHTHHHHT
T ss_pred cCCHHHHHHHHHHHHHCCc----------------------HHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHhCccc
Confidence 9999999999999999985 55666666666667888887 59999999996 4553
Q ss_pred ---CCCHHHHHHHHHHH
Q 048384 513 ---QLDVWKLLDDAHDL 526 (538)
Q Consensus 513 ---~idv~~lL~~A~~L 526 (538)
..|++.+++.|..+
T Consensus 258 ~~~~~d~~~ll~~A~~l 274 (310)
T 3hzj_A 258 YRAEENARRLMEQACNI 274 (310)
T ss_dssp TCSHHHHHHHHHHHHHS
T ss_pred ccccccHHHHHHHHHhc
Confidence 35899999999776
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=8.3e-45 Score=370.16 Aligned_cols=205 Identities=19% Similarity=0.244 Sum_probs=180.0
Q ss_pred HHHHhhhhhhcCCCCccCCCCchhhhHHHHhhhhhhcccCCCCCCChhhhhHHHHHHHHHHHHHhhCCCCCcccchhHhH
Q 048384 277 QRIIRLDAVRANSEWITYCPSQATVSEVRARRSAEAVGLKDYDHLEPCRIFHAARLVAILEAYALYDPEIGYCQGMSDLL 356 (538)
Q Consensus 277 ~~~I~~Dv~RT~~~~~~f~~~~~~~~~~~a~~~~e~~~l~d~~~~~~~~~~~~~~L~~IL~aya~~~pdvGY~QGMndLa 356 (538)
.++|++||.||++.++.|..... +...++.|++||.+|+.+||++|||||||+||
T Consensus 83 ~~qI~~Dv~RT~~~~~~~~~~~~-------------------------~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~ia 137 (292)
T 4hl4_A 83 YQQVLLDVRRSLRRFPPGMPEEQ-------------------------REGLQEELIDIILLILERNPQLHYYQGYHDIV 137 (292)
T ss_dssp HHHHHHHHHTTGGGSCTTSCHHH-------------------------HHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHH
T ss_pred HHHHHHhhhhhhhhccCCCCHHH-------------------------HHHHHHHHHHHHHHHHHHCCCCCeeccHHHHH
Confidence 56899999999999888754210 12346689999999999999999999999999
Q ss_pred HHHHHHhccchHHHHHHHHHhhh-hcccCCCChhHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCcchhhHHHHHHhcCCC
Q 048384 357 SPITAVITEDHEAFWCFVGFMKK-ARHNFRLDEVGIRRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVVLFRRE 435 (538)
Q Consensus 357 a~lL~v~~~E~~aFw~f~~lm~~-~~~~f~~~~~gl~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~lF~re 435 (538)
|+||+++++ ++|||||+++|+. +..+|..+..+++..+.+++.+|+.++|+||+||++.++ ..+|+++||+++|+++
T Consensus 138 a~lLl~~~e-~~aF~~l~~l~~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~P~L~~hL~~~~i-~~~~~~~W~ltlF~~~ 215 (292)
T 4hl4_A 138 VTFLLVVGE-RLATSLVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQSAEV-GTIFALSWLITWFGHV 215 (292)
T ss_dssp HHHHHHHCH-HHHHHHHHHHHHTTTTGGGCSSSCTTTGGGGGHHHHHHHHCHHHHHHHC-CCC-CSGGGHHHHHTTTTTT
T ss_pred HHHHHHcCH-HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHCHHHHHHHHHcCC-CcchHHHHHHHHHhhh
Confidence 999988875 5999999999997 445567778889999999999999999999999999999 5799999999999999
Q ss_pred CC-HHHHHHHHHHHHhhhhhhhhccccchhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcccCCC
Q 048384 436 LS-FEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLKRRKLIIEKYSSMDEILRECNSMAGQL 514 (538)
Q Consensus 436 lp-~~~vlrlWD~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~lf~iaa~ll~~r~~iL~~~~d~deil~~ln~l~~~i 514 (538)
++ ++.++||||++|++|. .+++|+++|+++..++.||....+++.+++++++++..+
T Consensus 216 l~~~~~~~rlWD~~l~~g~----------------------~~~~~v~~ail~~~~~~Ll~~~~d~~~l~~~l~~lp~~~ 273 (292)
T 4hl4_A 216 LSDFRHVVRLYDFFLACHP----------------------LMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDL 273 (292)
T ss_dssp SCCHHHHHHHHHHHHHSCT----------------------THHHHHHHHHHHHTHHHHHTSCCSTTHHHHHHHSCCSSC
T ss_pred cCcHHHHHHHHHHHHHcCC----------------------cHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCC
Confidence 96 9999999999999985 568888877777788888886568999999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 048384 515 DVWKLLDDAHDLVVTL 530 (538)
Q Consensus 515 dv~~lL~~A~~L~~~~ 530 (538)
|++.++..|..|+.++
T Consensus 274 d~~~li~~A~~l~~~~ 289 (292)
T 4hl4_A 274 PYETLISRAGDLFVQF 289 (292)
T ss_dssp CHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHC
Confidence 9999999999999875
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=100.00 E-value=6.4e-38 Score=319.21 Aligned_cols=158 Identities=12% Similarity=0.193 Sum_probs=142.5
Q ss_pred cccchhHhHHHHHHHhccchHHHHHHHHHhhhhcccCCCChhHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCcchhhHHH
Q 048384 348 YCQGMSDLLSPITAVITEDHEAFWCFVGFMKKARHNFRLDEVGIRRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRM 427 (538)
Q Consensus 348 Y~QGMndLaa~lL~v~~~E~~aFw~f~~lm~~~~~~f~~~~~gl~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW 427 (538)
++|||.+||++++.++.+|++|||||++||+++.++|..+++|++..+ +.||+.++|+||+||+++++.+.+++.+|
T Consensus 131 ~~~~~~~Iaa~ll~l~~~E~dAFW~f~~Lm~~l~~~f~~~~~gl~~~l---~~LL~~~dP~L~~HL~~~~i~~~~~~~rW 207 (294)
T 3qwl_A 131 DDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQLNTKYRDSLPQLPKAF---EQYLNLEDGRLLTHLRMCSAAPKLPYDLW 207 (294)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTTTTTTGGGHHHHH---HHHHHHHCHHHHHHHHHTTCGGGSCHHHH
T ss_pred chhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhCCChhHHHHHH---HHHHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 559999999999999999999999999999999999999999998764 89999999999999999999877777799
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhhhhhhhhccccchhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Q 048384 428 VVVLFRRELSFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLKRRKLIIEKYSSMDEILREC 507 (538)
Q Consensus 428 ~l~lF~relp~~~vlrlWD~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~lf~iaa~ll~~r~~iL~~~~d~deil~~l 507 (538)
|+++|+++||++.++||||++|+++. .+++|+++|+|...|+.||. +..+++|++++
T Consensus 208 fl~lF~~~~p~~~vlRlWD~~~~~~~----------------------~~l~~valAiL~~~r~~Ll~-~~~~~~il~~L 264 (294)
T 3qwl_A 208 FKRCFAGCLPESSLQRVWDKVVSGSC----------------------KILVFVAVEILLTFKIKVMA-LNSAEKITKFL 264 (294)
T ss_dssp HTSTTTTTSCHHHHHHHHHHHHTTCS----------------------THHHHHHHHHHHHTHHHHHH-CCSHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHhCCc----------------------hHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 99999999999999999999999774 66788777777778888887 45569999999
Q ss_pred hcccCCCCHHHHHHHHHHHHHHHHH
Q 048384 508 NSMAGQLDVWKLLDDAHDLVVTLHD 532 (538)
Q Consensus 508 n~l~~~idv~~lL~~A~~L~~~~~~ 532 (538)
++++ ..|++.++..|..|++++..
T Consensus 265 q~lp-~~di~~ll~~A~~l~~~~~~ 288 (294)
T 3qwl_A 265 ENIP-QDSSDAIVSKAIDLWHKHCG 288 (294)
T ss_dssp TTCC-STTHHHHHHHHHHHHHHHHC
T ss_pred HcCC-cccHHHHHHHHHHHHHHcCC
Confidence 9998 67899999999999998865
No 8
>1r6x_A ATP:sulfate adenylyltransferase; APS kinase-like domain; 1.40A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5
Probab=28.71 E-value=38 Score=35.15 Aligned_cols=36 Identities=19% Similarity=0.189 Sum_probs=29.5
Q ss_pred CCccchHHHHHHHHhCCCCcc--hHHHHHHHhhCCCCC
Q 048384 90 KFRDGGVKFLKKVRSRGVDPS--IRVEVWPFLLGVYDL 125 (538)
Q Consensus 90 r~~~~~~~~lk~v~~gGi~p~--iR~eVW~fLLGvy~~ 125 (538)
++...+.++++.++.|-.+|+ .|+|||..|..+||.
T Consensus 352 ~~~iSGT~~R~~L~~G~~pP~~f~rpeV~~iL~~~~~~ 389 (395)
T 1r6x_A 352 TLNISGTELRRRLRVGGEIPEWFSYPEVVKILRESNPP 389 (395)
T ss_dssp CBCCCHHHHHHHHHHTCCCCTTTSCHHHHHHHTTC---
T ss_pred eEccCHHHHHHHHHCcCCCCcccCCHHHHHHHHHhcCC
Confidence 566677899999999988887 999999999999875
No 9
>3kev_A Galieria sulfuraria DCUN1 domain-containing prote; cullin, neddylation, DCN-1, center for eukaryotic structural genomics, PSI; HET: CSO MSE; 1.30A {Galdieria sulphuraria}
Probab=18.72 E-value=1.8e+02 Score=26.99 Aligned_cols=57 Identities=26% Similarity=0.452 Sum_probs=37.9
Q ss_pred ChhHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCcchhhHHHHHHhcCCCCCHHHHHHHHHHHHhhh
Q 048384 387 DEVGIRRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVVLFRRELSFEQTLCLWEVMWADQ 452 (538)
Q Consensus 387 ~~~gl~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~lF~relp~~~vlrlWD~~l~~g 452 (538)
....++..+..+..-| .+|..++.+- -|+|.+..--=.|.++++.++.+|+++|...
T Consensus 76 si~~lk~~l~~l~~~l--~d~~~Fk~~Y-------~ftF~~~re~gqk~L~~e~Ai~~W~lll~~~ 132 (199)
T 3kev_A 76 SLEKLKRKLSSLRKEI--EDPSKFRAFY-------QFVFQYSKEPSQRSLPAETAMALWDVLLRGR 132 (199)
T ss_dssp SHHHHHHHHHHHHHHT--TSHHHHHHHH-------HHHHHHHSCTTCSSBCHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHc--cCHHHHHHHH-------HHHHHHHcCcCcCCCCHHHHHHHHHHHhCCc
Confidence 3445666565555544 4666555553 4677766555567899999999999999653
No 10
>4gba_A DCN1-like protein 3; E3 ligase, ligase-peptide complex; HET: AME; 2.40A {Homo sapiens}
Probab=17.40 E-value=1.3e+02 Score=28.64 Aligned_cols=55 Identities=18% Similarity=0.321 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCcchhhHHHHHH--hcCCCCCHHHHHHHHHHHHhh
Q 048384 388 EVGIRRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVV--LFRRELSFEQTLCLWEVMWAD 451 (538)
Q Consensus 388 ~~gl~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~--lF~relp~~~vlrlWD~~l~~ 451 (538)
...++..+..+..-| .+|..++.+- -|+|.+-.. -=.|.++++.++.+|.++|..
T Consensus 76 i~~lk~~l~~L~~~l--~d~~~Fk~~Y-------~ftF~~~~~~e~gqk~L~le~Ai~~W~Lll~~ 132 (221)
T 4gba_A 76 IDGICARFPSLLTEA--KQEDKFKDLY-------RFTFQFGLDSEEGQRSLHREIAIALWKLVFTQ 132 (221)
T ss_dssp HHHHHHHHHHHHHHT--TSHHHHHHHH-------HHHHHHHSCTTTTCSSEEHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHc--cCHHHHHHHH-------HHHHHHHhcCCccccCCCHHHHHHHHHHHcCC
Confidence 345555555555544 5666666553 466666654 456788999999999999975
Done!