BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048385
         (344 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1FSK|C Chain C, Complex Formation Between A Fab Fragment Of A Monoclonal
           Igg Antibody And The Major Allergen From Birch Pollen
           Bet V 1
 pdb|1FSK|F Chain F, Complex Formation Between A Fab Fragment Of A Monoclonal
           Igg Antibody And The Major Allergen From Birch Pollen
           Bet V 1
 pdb|1FSK|I Chain I, Complex Formation Between A Fab Fragment Of A Monoclonal
           Igg Antibody And The Major Allergen From Birch Pollen
           Bet V 1
 pdb|1FSK|L Chain L, Complex Formation Between A Fab Fragment Of A Monoclonal
           Igg Antibody And The Major Allergen From Birch Pollen
           Bet V 1
          Length = 220

 Score = 29.3 bits (64), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 35/79 (44%)

Query: 218 FINYLANQLGKPVWGVGSLLPEQFYKSAGSKLHDHEMRTNRRSSNMTEDEIVDPTLDEYL 277
           +IN++  + G+ +  VG++ P   Y +   K  D    T  +SS+    ++  PT ++  
Sbjct: 33  WINWVKQRPGQGLEWVGNIFPSDSYTNYNQKFKDKATLTVDKSSSTAYMQVNSPTSEDSA 92

Query: 278 VLANALEASNRPFILVIQG 296
           V      A +  F    QG
Sbjct: 93  VYYCTRGARDTWFAYWGQG 111


>pdb|1P33|A Chain A, Pteridine Reductase From Leishmania Tarentolae Complex
           With Nadph And Mtx
 pdb|1P33|B Chain B, Pteridine Reductase From Leishmania Tarentolae Complex
           With Nadph And Mtx
 pdb|1P33|C Chain C, Pteridine Reductase From Leishmania Tarentolae Complex
           With Nadph And Mtx
 pdb|1P33|D Chain D, Pteridine Reductase From Leishmania Tarentolae Complex
           With Nadph And Mtx
          Length = 289

 Score = 28.9 bits (63), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 4/31 (12%)

Query: 144 SAAVECAMWQARIQGVKPGEGRLLPGLPQDM 174
           SAA+E A  Q R+ GV PG    L  LP DM
Sbjct: 208 SAALELASLQIRVNGVSPG----LSVLPDDM 234


>pdb|4AG4|H Chain H, Crystal Structure Of A Ddr1-Fab Complex
          Length = 215

 Score = 28.5 bits (62), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 218 FINYLANQLGKPVWGVGSLLPEQFYKSAGSKLHDHEMRTNRRSSNMTEDEIVDPTLDEYL 277
           +IN++  + G+ +  +G++ P   Y +   K  D    T  +SSN    ++  PT ++  
Sbjct: 33  WINWVKQRPGQGLEWIGNIYPSGGYTNYNQKFKDKATLTVDKSSNTAYIQLSSPTSEDSA 92

Query: 278 V 278
           V
Sbjct: 93  V 93


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,556,423
Number of Sequences: 62578
Number of extensions: 292079
Number of successful extensions: 617
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 615
Number of HSP's gapped (non-prelim): 3
length of query: 344
length of database: 14,973,337
effective HSP length: 100
effective length of query: 244
effective length of database: 8,715,537
effective search space: 2126591028
effective search space used: 2126591028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)