Your job contains 1 sequence.
>048387
IVLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVML
RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPDGI
PVDFNFYKTFWSLQ
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 048387
(134 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2178183 - symbol:THO1 "AT5G09860" species:3702... 680 6.5e-67 1
WB|WBGene00020172 - symbol:thoc-1 species:6239 "Caenorhab... 225 4.0e-20 2
UNIPROTKB|E2RNV0 - symbol:THOC1 "Uncharacterized protein"... 205 4.5e-20 2
UNIPROTKB|Q96FV9 - symbol:THOC1 "THO complex subunit 1" s... 205 4.5e-20 2
MGI|MGI:1919668 - symbol:Thoc1 "THO complex 1" species:10... 205 4.5e-20 2
UNIPROTKB|I3LE05 - symbol:THOC1 "Uncharacterized protein"... 205 4.6e-20 2
UNIPROTKB|D4ABL0 - symbol:Thoc1 "THO complex subunit 1" s... 204 5.7e-20 2
UNIPROTKB|F1MJV3 - symbol:THOC1 "Uncharacterized protein"... 204 5.8e-20 2
FB|FBgn0037382 - symbol:Hpr1 "Hpr1" species:7227 "Drosoph... 222 2.6e-17 1
ZFIN|ZDB-GENE-030826-9 - symbol:thoc1 "THO complex 1" spe... 218 6.3e-17 1
DICTYBASE|DDB_G0275717 - symbol:thoc1 "putative THO1 prot... 170 9.5e-15 2
POMBASE|SPCP25A2.03 - symbol:SPCP25A2.03 "THO complex sub... 184 3.5e-13 1
UNIPROTKB|F1NMW7 - symbol:THOC1 "Uncharacterized protein"... 177 1.2e-12 1
>TAIR|locus:2178183 [details] [associations]
symbol:THO1 "AT5G09860" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=IMP] [GO:0031047 "gene silencing by RNA" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006406 "mRNA export from
nucleus" evidence=IMP] [GO:0050832 "defense response to fungus"
evidence=IMP] GO:GO:0005634 EMBL:CP002688 GO:GO:0050832
GO:GO:0006406 GO:GO:0010267 InterPro:IPR021861 Pfam:PF11957
KO:K12878 EMBL:AF424566 EMBL:AF428323 IPI:IPI00528228
RefSeq:NP_568219.1 UniGene:At.27041 PRIDE:Q93VM9
EnsemblPlants:AT5G09860.1 GeneID:830846 KEGG:ath:AT5G09860
TAIR:At5g09860 InParanoid:Q93VM9 OMA:DMDPSAG PhylomeDB:Q93VM9
ProtClustDB:CLSN2689570 Genevestigator:Q93VM9 Uniprot:Q93VM9
Length = 599
Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
Identities = 129/134 (96%), Positives = 131/134 (97%)
Query: 1 IVLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVML 60
+VLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKD+FGYIESKQDILGK ELFARGKLVML
Sbjct: 90 VVLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKDVFGYIESKQDILGKQELFARGKLVML 149
Query: 61 RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPDGI 120
RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPP GI
Sbjct: 150 RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPKGI 209
Query: 121 PVDFNFYKTFWSLQ 134
VDFNFYKTFWSLQ
Sbjct: 210 SVDFNFYKTFWSLQ 223
>WB|WBGene00020172 [details] [associations]
symbol:thoc-1 species:6239 "Caenorhabditis elegans"
[GO:0000347 "THO complex" evidence=ISS] InterPro:IPR021861
Pfam:PF11957 eggNOG:NOG275387 KO:K12878
GeneTree:ENSGT00390000016232 EMBL:FO081698 RefSeq:NP_493796.2
UniGene:Cel.14485 ProteinModelPortal:Q9N5E3 SMR:Q9N5E3
STRING:Q9N5E3 PaxDb:Q9N5E3 EnsemblMetazoa:T02H6.2 GeneID:173460
KEGG:cel:CELE_T02H6.2 UCSC:T02H6.2 CTD:173460 WormBase:T02H6.2
InParanoid:Q9N5E3 OMA:VEENMNE NextBio:879757 Uniprot:Q9N5E3
Length = 665
Score = 225 (84.3 bits), Expect = 4.0e-20, Sum P(2) = 4.0e-20
Identities = 44/100 (44%), Positives = 61/100 (61%)
Query: 20 LEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDVVFC 79
L+DL EMS+++ CK IF +E + + + +LR CN LLRRLS+ + FC
Sbjct: 82 LQDLLEMSSIEECKQIFSIVEENMNEFKQPGFIETAQNNILRFCNDLLRRLSRTAETSFC 141
Query: 80 GRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPDG 119
GRI+ FL+ F PL+E+S VN G FNT N T Y++ DG
Sbjct: 142 GRIMFFLSRFLPLTEKSGVNFMGHFNTLNVTNYDESETDG 181
Score = 47 (21.6 bits), Expect = 4.0e-20, Sum P(2) = 4.0e-20
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 109 ET-KYEKDPPDGIPVDFNFYKTFWSLQ 134
ET + E+D I V Y+ FWSLQ
Sbjct: 202 ETGEIEEDNSKEIQVTPEMYRQFWSLQ 228
>UNIPROTKB|E2RNV0 [details] [associations]
symbol:THOC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046784 "intronless viral mRNA export from
host nucleus" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0000445 "THO complex part of transcription export
complex" evidence=IEA] [GO:0007165 "signal transduction"
evidence=IEA] InterPro:IPR000488 Pfam:PF00531 PROSITE:PS50017
SMART:SM00005 GO:GO:0005737 GO:GO:0006915 GO:GO:0007165
Gene3D:1.10.533.10 InterPro:IPR011029 SUPFAM:SSF47986 GO:GO:0046784
GO:GO:0032784 GO:GO:0000445 InterPro:IPR021861 Pfam:PF11957
CTD:9984 KO:K12878 OMA:ILMGNEE GeneTree:ENSGT00390000016232
EMBL:AAEX03005467 RefSeq:XP_547651.2 Ensembl:ENSCAFT00000029114
GeneID:490529 KEGG:cfa:490529 Uniprot:E2RNV0
Length = 657
Score = 205 (77.2 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 41/96 (42%), Positives = 57/96 (59%)
Query: 17 FQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDV 76
F LL D+ + + C IF ++E ++ GK +LR CN LLRRLSK+ +
Sbjct: 94 FVLLGDVLDCLPLDQCDTIFTFVEKNVATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNT 153
Query: 77 VFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKY 112
VFCGRI +FLA FPLSE+S +N++ FN N T +
Sbjct: 154 VFCGRIQLFLARLFPLSEKSGLNLQSQFNLENVTVF 189
Score = 67 (28.6 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 120 IPVDFNFYKTFWSLQ 134
IP+D+N Y+ FWSLQ
Sbjct: 228 IPIDYNLYRKFWSLQ 242
>UNIPROTKB|Q96FV9 [details] [associations]
symbol:THOC1 "THO complex subunit 1" species:9606 "Homo
sapiens" [GO:0007165 "signal transduction" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0000346 "transcription export complex" evidence=IDA]
[GO:0000347 "THO complex" evidence=IDA] [GO:0000445 "THO complex
part of transcription export complex" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006915 "apoptotic process" evidence=IDA] [GO:0006406 "mRNA
export from nucleus" evidence=IDA] [GO:0046784 "intronless viral
mRNA export from host nucleus" evidence=IDA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000488 Pfam:PF00531 PROSITE:PS50017
SMART:SM00005 GO:GO:0005737 GO:GO:0006915 GO:GO:0007165
GO:GO:0008380 GO:GO:0003677 GO:GO:0016607 GO:GO:0006397
GO:GO:0006351 GO:GO:0003723 GO:GO:0006396 EMBL:CH471113
Gene3D:1.10.533.10 InterPro:IPR011029 SUPFAM:SSF47986 GO:GO:0016363
GO:GO:0046784 GO:GO:0032784 GO:GO:0000445 InterPro:IPR021861
Pfam:PF11957 EMBL:L36529 EMBL:AY573302 EMBL:AY573303 EMBL:AK314755
EMBL:AP000845 EMBL:BC010381 IPI:IPI00305374 IPI:IPI00646620
IPI:IPI00944519 PIR:A53545 RefSeq:NP_005122.2 UniGene:Hs.712543
PDB:1WXP PDBsum:1WXP ProteinModelPortal:Q96FV9 SMR:Q96FV9
IntAct:Q96FV9 MINT:MINT-4536762 STRING:Q96FV9 PhosphoSite:Q96FV9
DMDM:37999906 PaxDb:Q96FV9 PRIDE:Q96FV9 DNASU:9984
Ensembl:ENST00000261600 GeneID:9984 KEGG:hsa:9984 UCSC:uc002kkj.4
UCSC:uc002kkl.2 CTD:9984 GeneCards:GC18M000204 HGNC:HGNC:19070
HPA:HPA019096 HPA:HPA019687 MIM:606930 neXtProt:NX_Q96FV9
PharmGKB:PA134887435 eggNOG:NOG275387 HOGENOM:HOG000008123
HOVERGEN:HBG060294 InParanoid:Q96FV9 KO:K12878 OMA:ILMGNEE
OrthoDB:EOG4HX50P ChiTaRS:THOC1 EvolutionaryTrace:Q96FV9
GenomeRNAi:9984 NextBio:37696 Bgee:Q96FV9 CleanEx:HS_THOC1
Genevestigator:Q96FV9 GermOnline:ENSG00000079134 Uniprot:Q96FV9
Length = 657
Score = 205 (77.2 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 41/96 (42%), Positives = 57/96 (59%)
Query: 17 FQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDV 76
F LL D+ + + C IF ++E ++ GK +LR CN LLRRLSK+ +
Sbjct: 94 FVLLGDVLDCLPLDQCDTIFTFVEKNVATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNT 153
Query: 77 VFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKY 112
VFCGRI +FLA FPLSE+S +N++ FN N T +
Sbjct: 154 VFCGRIQLFLARLFPLSEKSGLNLQSQFNLENVTVF 189
Score = 67 (28.6 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 120 IPVDFNFYKTFWSLQ 134
IP+D+N Y+ FWSLQ
Sbjct: 228 IPIDYNLYRKFWSLQ 242
>MGI|MGI:1919668 [details] [associations]
symbol:Thoc1 "THO complex 1" species:10090 "Mus musculus"
[GO:0000346 "transcription export complex" evidence=ISO]
[GO:0000347 "THO complex" evidence=ISO] [GO:0000445 "THO complex
part of transcription export complex" evidence=ISO] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006406 "mRNA export from nucleus" evidence=ISO]
[GO:0006810 "transport" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO;RCA] [GO:0007165 "signal transduction"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=ISO] [GO:0042981 "regulation of apoptotic process"
evidence=RCA] [GO:0046784 "intronless viral mRNA export from host
nucleus" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR000488 Pfam:PF00531 PROSITE:PS50017 SMART:SM00005
MGI:MGI:1919668 GO:GO:0005737 GO:GO:0006915 GO:GO:0007165
GO:GO:0008380 GO:GO:0003677 GO:GO:0016607 GO:GO:0006397
GO:GO:0006351 GO:GO:0003723 Gene3D:1.10.533.10 InterPro:IPR011029
SUPFAM:SSF47986 GO:GO:0016363 GO:GO:0046784 GO:GO:0032784
GO:GO:0000445 InterPro:IPR021861 Pfam:PF11957 CTD:9984
eggNOG:NOG275387 HOGENOM:HOG000008123 HOVERGEN:HBG060294 KO:K12878
OMA:ILMGNEE OrthoDB:EOG4HX50P EMBL:AK031785 EMBL:AK032200
EMBL:AK042867 EMBL:BC024951 IPI:IPI00153778 RefSeq:NP_705780.1
UniGene:Mm.219648 ProteinModelPortal:Q8R3N6 SMR:Q8R3N6
STRING:Q8R3N6 PhosphoSite:Q8R3N6 PaxDb:Q8R3N6 PRIDE:Q8R3N6
Ensembl:ENSMUST00000025137 GeneID:225160 KEGG:mmu:225160
UCSC:uc008eal.1 GeneTree:ENSGT00390000016232 InParanoid:Q8R3N6
NextBio:377554 Bgee:Q8R3N6 CleanEx:MM_THOC1 Genevestigator:Q8R3N6
GermOnline:ENSMUSG00000024287 Uniprot:Q8R3N6
Length = 657
Score = 205 (77.2 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 41/96 (42%), Positives = 57/96 (59%)
Query: 17 FQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDV 76
F LL D+ + + C IF ++E ++ GK +LR CN LLRRLSK+ +
Sbjct: 94 FVLLGDVLDCLPLDQCDTIFTFVEKNVATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNT 153
Query: 77 VFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKY 112
VFCGRI +FLA FPLSE+S +N++ FN N T +
Sbjct: 154 VFCGRIQLFLARLFPLSEKSGLNLQSQFNLENVTVF 189
Score = 67 (28.6 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 120 IPVDFNFYKTFWSLQ 134
IP+D+N Y+ FWSLQ
Sbjct: 228 IPIDYNLYRKFWSLQ 242
>UNIPROTKB|I3LE05 [details] [associations]
symbol:THOC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046784 "intronless viral mRNA export from host
nucleus" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0000445 "THO complex part of transcription export complex"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
InterPro:IPR000488 Pfam:PF00531 PROSITE:PS50017 SMART:SM00005
GO:GO:0005737 GO:GO:0006915 GO:GO:0007165 Gene3D:1.10.533.10
InterPro:IPR011029 SUPFAM:SSF47986 GO:GO:0046784 GO:GO:0032784
GO:GO:0000445 InterPro:IPR021861 Pfam:PF11957 OMA:ILMGNEE
GeneTree:ENSGT00390000016232 Ensembl:ENSSSCT00000029403
Uniprot:I3LE05
Length = 662
Score = 205 (77.2 bits), Expect = 4.6e-20, Sum P(2) = 4.6e-20
Identities = 41/96 (42%), Positives = 57/96 (59%)
Query: 17 FQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDV 76
F LL D+ + + C IF ++E ++ GK +LR CN LLRRLSK+ +
Sbjct: 97 FVLLGDVLDCLPLDQCDTIFTFVEKNVATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNT 156
Query: 77 VFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKY 112
VFCGRI +FLA FPLSE+S +N++ FN N T +
Sbjct: 157 VFCGRIQLFLARLFPLSEKSGLNLQSQFNLENVTVF 192
Score = 67 (28.6 bits), Expect = 4.6e-20, Sum P(2) = 4.6e-20
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 120 IPVDFNFYKTFWSLQ 134
IP+D+N Y+ FWSLQ
Sbjct: 231 IPIDYNLYRKFWSLQ 245
>UNIPROTKB|D4ABL0 [details] [associations]
symbol:Thoc1 "THO complex subunit 1" species:10116 "Rattus
norvegicus" [GO:0007165 "signal transduction" evidence=IEA]
InterPro:IPR000488 Pfam:PF00531 PROSITE:PS50017 SMART:SM00005
RGD:1308657 GO:GO:0007165 Gene3D:1.10.533.10 InterPro:IPR011029
SUPFAM:SSF47986 InterPro:IPR021861 Pfam:PF11957 OrthoDB:EOG4HX50P
IPI:IPI00560890 Ensembl:ENSRNOT00000021087 ArrayExpress:D4ABL0
Uniprot:D4ABL0
Length = 657
Score = 204 (76.9 bits), Expect = 5.7e-20, Sum P(2) = 5.7e-20
Identities = 41/96 (42%), Positives = 57/96 (59%)
Query: 17 FQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDV 76
F LL D+ + + C IF ++E ++ GK +LR CN LLRRLSK+ +
Sbjct: 94 FVLLGDVLDCLPLDQCDTIFTFVEKNVATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNT 153
Query: 77 VFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKY 112
VFCGRI +FLA FPLSE+S +N++ FN N T +
Sbjct: 154 VFCGRIQLFLARLFPLSEKSGLNLQSQFNLENITVF 189
Score = 67 (28.6 bits), Expect = 5.7e-20, Sum P(2) = 5.7e-20
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 120 IPVDFNFYKTFWSLQ 134
IP+D+N Y+ FWSLQ
Sbjct: 228 IPIDYNLYRKFWSLQ 242
>UNIPROTKB|F1MJV3 [details] [associations]
symbol:THOC1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046784 "intronless viral mRNA export from host
nucleus" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0000445 "THO complex part of transcription export complex"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
InterPro:IPR000488 Pfam:PF00531 PROSITE:PS50017 SMART:SM00005
GO:GO:0005737 GO:GO:0006915 GO:GO:0007165 Gene3D:1.10.533.10
InterPro:IPR011029 SUPFAM:SSF47986 GO:GO:0046784 GO:GO:0032784
GO:GO:0000445 InterPro:IPR021861 Pfam:PF11957 OMA:ILMGNEE
GeneTree:ENSGT00390000016232 EMBL:DAAA02056653 IPI:IPI00699918
Ensembl:ENSBTAT00000025584 Uniprot:F1MJV3
Length = 660
Score = 204 (76.9 bits), Expect = 5.8e-20, Sum P(2) = 5.8e-20
Identities = 41/96 (42%), Positives = 57/96 (59%)
Query: 17 FQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDV 76
F LL D+ + + C IF ++E ++ GK +LR CN LLRRLSK+ +
Sbjct: 97 FVLLGDVLDCLPLDQCDTIFTFVERNVATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNT 156
Query: 77 VFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKY 112
VFCGRI +FLA FPLSE+S +N++ FN N T +
Sbjct: 157 VFCGRIQLFLARLFPLSEKSGLNLQSQFNLENVTVF 192
Score = 67 (28.6 bits), Expect = 5.8e-20, Sum P(2) = 5.8e-20
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 120 IPVDFNFYKTFWSLQ 134
IP+D+N Y+ FWSLQ
Sbjct: 231 IPIDYNLYRKFWSLQ 245
>FB|FBgn0037382 [details] [associations]
symbol:Hpr1 "Hpr1" species:7227 "Drosophila melanogaster"
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0007165 "signal
transduction" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=NAS] [GO:0031990 "mRNA export from nucleus in response to
heat stress" evidence=IMP] [GO:0000347 "THO complex" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR000488 Pfam:PF00531 PROSITE:PS50017
EMBL:AE014297 GO:GO:0007165 Gene3D:1.10.533.10 InterPro:IPR011029
SUPFAM:SSF47986 GO:GO:0031990 InterPro:IPR021861 Pfam:PF11957
GO:GO:0000347 eggNOG:NOG275387 KO:K12878
GeneTree:ENSGT00390000016232 EMBL:AY122188 EMBL:AJ556821
RefSeq:NP_649594.1 UniGene:Dm.31292 SMR:Q9VNI8 DIP:DIP-48907N
STRING:Q9VNI8 EnsemblMetazoa:FBtr0078667 GeneID:40723
KEGG:dme:Dmel_CG2031 UCSC:CG2031-RA CTD:40723 FlyBase:FBgn0037382
InParanoid:Q9VNI8 OMA:DNLQACK OrthoDB:EOG4T1G2K GenomeRNAi:40723
NextBio:820267 Uniprot:Q9VNI8
Length = 701
Score = 222 (83.2 bits), Expect = 2.6e-17, P = 2.6e-17
Identities = 53/132 (40%), Positives = 73/132 (55%)
Query: 19 LLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDVVF 78
LL D ++ T+ C+ IF ++E ++ + F+ K +LR CN LLRRLS+ + VF
Sbjct: 103 LLIDTFDVVTLDKCQKIFQFVEDMVEVWKEEIFFSSCKNNILRMCNDLLRRLSRTQNTVF 162
Query: 79 CGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPD--------------GIP--V 122
CGRI +FL+ FFP SERS +NI FN N T+Y D D IP +
Sbjct: 163 CGRIQLFLSKFFPFSERSGLNIVSEFNLDNFTEYGLDSKDHDESDNKELEDTAEDIPLKI 222
Query: 123 DFNFYKTFWSLQ 134
D++ Y FWSLQ
Sbjct: 223 DYDLYCKFWSLQ 234
>ZFIN|ZDB-GENE-030826-9 [details] [associations]
symbol:thoc1 "THO complex 1" species:7955 "Danio
rerio" [GO:0007165 "signal transduction" evidence=IEA]
InterPro:IPR000488 Pfam:PF00531 PROSITE:PS50017 SMART:SM00005
ZFIN:ZDB-GENE-030826-9 GO:GO:0007165 Gene3D:1.10.533.10
InterPro:IPR011029 SUPFAM:SSF47986 InterPro:IPR021861 Pfam:PF11957
CTD:9984 HOGENOM:HOG000008123 HOVERGEN:HBG060294 KO:K12878
EMBL:BC054938 IPI:IPI00491037 RefSeq:NP_958481.1 UniGene:Dr.75966
ProteinModelPortal:Q7SYB2 SMR:Q7SYB2 PRIDE:Q7SYB2 GeneID:373077
KEGG:dre:373077 InParanoid:Q7SYB2 NextBio:20813350
ArrayExpress:Q7SYB2 Bgee:Q7SYB2 Uniprot:Q7SYB2
Length = 655
Score = 218 (81.8 bits), Expect = 6.3e-17, P = 6.3e-17
Identities = 43/102 (42%), Positives = 60/102 (58%)
Query: 17 FQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDV 76
F LL D+ + + C IF ++E ++ GK +LR CN LLRRLSK+ +
Sbjct: 94 FLLLGDVLDCLPLDQCDKIFSFVEENVSTWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNT 153
Query: 77 VFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPD 118
VFCGRI +FLA FPLSE+S +N++ FN N T + K+ D
Sbjct: 154 VFCGRIQLFLARLFPLSEKSGLNLQSQFNLDNITVFNKNEQD 195
>DICTYBASE|DDB_G0275717 [details] [associations]
symbol:thoc1 "putative THO1 protein (nuclear matrix
protein p84)" species:44689 "Dictyostelium discoideum" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
dictyBase:DDB_G0275717 GenomeReviews:CM000151_GR EMBL:AAFI02000013
InterPro:IPR021861 Pfam:PF11957 eggNOG:NOG275387 KO:K12878
RefSeq:XP_643594.2 STRING:Q552T7 EnsemblProtists:DDB0233560
GeneID:8620181 KEGG:ddi:DDB_G0275717 OMA:SFSTHIN
ProtClustDB:CLSZ2848579 Uniprot:Q552T7
Length = 726
Score = 170 (64.9 bits), Expect = 9.5e-15, Sum P(2) = 9.5e-15
Identities = 38/94 (40%), Positives = 57/94 (60%)
Query: 18 QLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKL--VMLRTCNQLLRRLSKAND 75
QL EDL E T+ C D+FG +ES+ +I + +G+ ++L+ C +LL+R + +
Sbjct: 142 QLSEDLFETKTISKCLDLFGLLESRAEIFSQDPEIIKGRKRNLLLKICIELLKRETNPDS 201
Query: 76 VVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNE 109
CGRIL+FLA+ FPLS+ S +N KG N E
Sbjct: 202 ---CGRILLFLAYVFPLSDPSGLNTKGEHNIHPE 232
Score = 53 (23.7 bits), Expect = 9.5e-15, Sum P(2) = 9.5e-15
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 122 VDFNFYKTFWSLQ 134
VD NFY+ FW LQ
Sbjct: 282 VDRNFYRQFWGLQ 294
>POMBASE|SPCP25A2.03 [details] [associations]
symbol:SPCP25A2.03 "THO complex subunit (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000347 "THO complex"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=ISS]
[GO:0006406 "mRNA export from nucleus" evidence=IC]
PomBase:SPCP25A2.03 EMBL:CU329672 GO:GO:0006368 GO:GO:0006406
InterPro:IPR021861 Pfam:PF11957 GO:GO:0000347 eggNOG:NOG275387
KO:K12878 PIR:T50450 RefSeq:NP_588092.1 STRING:Q9URT2
EnsemblFungi:SPCP25A2.03.1 GeneID:2539396 KEGG:spo:SPCP25A2.03
OMA:REANWIR OrthoDB:EOG4X3M8G NextBio:20800560 Uniprot:Q9URT2
Length = 752
Score = 184 (69.8 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 46/131 (35%), Positives = 73/131 (55%)
Query: 17 FQLLEDLTEMSTMKNCKDIFGYIESKQDIL-GKLELFARGKLVMLRTCNQLLRRLSKAND 75
F +LE+L ++ T+ C ++ Y E++ ++ G + RG V+LR N+LLRRLS+ +
Sbjct: 103 FLILEELMDIHTVNECAKLYEYFETRPSLMKGIVSNRGRGP-VLLRISNELLRRLSRQEN 161
Query: 76 VVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNET-KYEKDPPDGIPV----DFNFYK-- 128
FCGRI + L+ FP ERS N++G +NT + K E PP P+ D +++K
Sbjct: 162 SSFCGRIDILLSKAFPPEERSGANLRGDYNTVHSFGKVELSPPS-TPISDRTDLSYHKKL 220
Query: 129 -----TFWSLQ 134
+W LQ
Sbjct: 221 NTLFTAYWDLQ 231
>UNIPROTKB|F1NMW7 [details] [associations]
symbol:THOC1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0007165 "signal transduction" evidence=IEA] [GO:0000445
"THO complex part of transcription export complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0046784 "intronless
viral mRNA export from host nucleus" evidence=IEA]
InterPro:IPR000488 Pfam:PF00531 PROSITE:PS50017 SMART:SM00005
GO:GO:0005737 GO:GO:0006915 GO:GO:0007165 GO:GO:0006406
Gene3D:1.10.533.10 InterPro:IPR011029 SUPFAM:SSF47986 GO:GO:0032784
GO:GO:0000445 InterPro:IPR021861 Pfam:PF11957 OMA:ILMGNEE
GeneTree:ENSGT00390000016232 EMBL:AADN02021331 EMBL:AADN02077728
IPI:IPI00585456 Ensembl:ENSGALT00000024055 Uniprot:F1NMW7
Length = 547
Score = 177 (67.4 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 33/61 (54%), Positives = 44/61 (72%)
Query: 52 FARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETK 111
++ GK +LR CN LLRRLSK+ + VFCGRI +FLA FPLSE+S +N++ FN N T
Sbjct: 18 YSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQFNLENVTV 77
Query: 112 Y 112
+
Sbjct: 78 F 78
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.326 0.142 0.427 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 134 134 0.00091 102 3 11 22 0.36 31
30 0.44 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 13
No. of states in DFA: 583 (62 KB)
Total size of DFA: 137 KB (2085 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 12.45u 0.13s 12.58t Elapsed: 00:00:01
Total cpu time: 12.45u 0.13s 12.58t Elapsed: 00:00:01
Start: Sat May 11 00:26:24 2013 End: Sat May 11 00:26:25 2013