BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048387
         (134 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4EXP|A Chain A, Structure Of Mouse Interleukin-34 In Complex With Mouse
           Fms
          Length = 177

 Score = 32.0 bits (71), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 83  LMFLAHFFPLSERSAVNIKGVFNTSNETKYEK 114
           L ++ H+FP++ R AV  +GV   +N T+ +K
Sbjct: 31  LQYMKHYFPINYRIAVPYEGVLRVANITRLQK 62


>pdb|4EXN|A Chain A, Crystal Structure Of Mouse Interleukin-34
 pdb|4EXN|B Chain B, Crystal Structure Of Mouse Interleukin-34
 pdb|4EXN|E Chain E, Crystal Structure Of Mouse Interleukin-34
 pdb|4EXN|F Chain F, Crystal Structure Of Mouse Interleukin-34
          Length = 175

 Score = 32.0 bits (71), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 83  LMFLAHFFPLSERSAVNIKGVFNTSNETKYEK 114
           L ++ H+FP++ R AV  +GV   +N T+ +K
Sbjct: 31  LQYMKHYFPINYRIAVPYEGVLRVANITRLQK 62


>pdb|4DKD|A Chain A, Crystal Structure Of Human Interleukin-34 Bound To Human
           Csf-1r
 pdb|4DKD|B Chain B, Crystal Structure Of Human Interleukin-34 Bound To Human
           Csf-1r
          Length = 185

 Score = 30.0 bits (66), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 10/32 (31%), Positives = 22/32 (68%)

Query: 83  LMFLAHFFPLSERSAVNIKGVFNTSNETKYEK 114
           L ++ H+FP++ + +V  +GVF  +N T+ ++
Sbjct: 34  LQYMKHYFPINYKISVPYEGVFRIANVTRLQR 65


>pdb|4DKC|A Chain A, Crystal Structure Of Human Interleukin-34
 pdb|4DKC|B Chain B, Crystal Structure Of Human Interleukin-34
 pdb|4DKE|A Chain A, Crystal Structure Of Human Interleukin-34 Bound To Fab1.1
 pdb|4DKE|B Chain B, Crystal Structure Of Human Interleukin-34 Bound To Fab1.1
 pdb|4DKF|A Chain A, Crystal Structure Of Human Interleukin-34 Bound To Fab2
 pdb|4DKF|B Chain B, Crystal Structure Of Human Interleukin-34 Bound To Fab2
          Length = 190

 Score = 30.0 bits (66), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 10/32 (31%), Positives = 22/32 (68%)

Query: 83  LMFLAHFFPLSERSAVNIKGVFNTSNETKYEK 114
           L ++ H+FP++ + +V  +GVF  +N T+ ++
Sbjct: 34  LQYMKHYFPINYKISVPYEGVFRIANVTRLQR 65


>pdb|2P0U|A Chain A, Crystal Structure Of Marchantia Polymorpha
           Stilbenecarboxylate Synthase 2 (Stcs2)
 pdb|2P0U|B Chain B, Crystal Structure Of Marchantia Polymorpha
           Stilbenecarboxylate Synthase 2 (Stcs2)
          Length = 413

 Score = 26.2 bits (56), Expect = 6.5,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 24/36 (66%), Gaps = 4/36 (11%)

Query: 12  EGGMIFQLLEDLTEMSTMKNCKDIFGYIESKQDILG 47
           E G++F LL+D+  + T    K+I G+++  ++++G
Sbjct: 278 EAGLVFHLLKDVPGLIT----KNIGGFLKDTKNLVG 309


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.142    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,832,247
Number of Sequences: 62578
Number of extensions: 132962
Number of successful extensions: 304
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 299
Number of HSP's gapped (non-prelim): 6
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)