BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048387
(134 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8R3N6|THOC1_MOUSE THO complex subunit 1 OS=Mus musculus GN=Thoc1 PE=1 SV=1
Length = 657
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 75/149 (50%), Gaps = 31/149 (20%)
Query: 17 FQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDV 76
F LL D+ + + C IF ++E ++ GK +LR CN LLRRLSK+ +
Sbjct: 94 FVLLGDVLDCLPLDQCDTIFTFVEKNVATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNT 153
Query: 77 VFCGRILMFLAHFFPLSERSAVNIKGVFNTSNET-------------KYEKDPPDG---- 119
VFCGRI +FLA FPLSE+S +N++ FN N T K+ +D +G
Sbjct: 154 VFCGRIQLFLARLFPLSEKSGLNLQSQFNLENVTVFNTNEQESTLGQKHTEDREEGMDVE 213
Query: 120 --------------IPVDFNFYKTFWSLQ 134
IP+D+N Y+ FWSLQ
Sbjct: 214 EGEMGDDEAPTTCSIPIDYNLYRKFWSLQ 242
>sp|Q96FV9|THOC1_HUMAN THO complex subunit 1 OS=Homo sapiens GN=THOC1 PE=1 SV=1
Length = 657
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 75/149 (50%), Gaps = 31/149 (20%)
Query: 17 FQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDV 76
F LL D+ + + C IF ++E ++ GK +LR CN LLRRLSK+ +
Sbjct: 94 FVLLGDVLDCLPLDQCDTIFTFVEKNVATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNT 153
Query: 77 VFCGRILMFLAHFFPLSERSAVNIKGVFNTSNET-------------KYEKDPPDG---- 119
VFCGRI +FLA FPLSE+S +N++ FN N T K+ +D +G
Sbjct: 154 VFCGRIQLFLARLFPLSEKSGLNLQSQFNLENVTVFNTNEQESTLGQKHTEDREEGMDVE 213
Query: 120 --------------IPVDFNFYKTFWSLQ 134
IP+D+N Y+ FWSLQ
Sbjct: 214 EGEMGDEEAPTTCSIPIDYNLYRKFWSLQ 242
>sp|Q9URT2|YJU3_SCHPO Uncharacterized protein P25A2.03 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCP25A2.03 PE=1 SV=1
Length = 752
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 74/133 (55%), Gaps = 15/133 (11%)
Query: 15 MIFQLLEDLTEMSTMKNCKDIFGYIESKQDIL-GKLELFARGKLVMLRTCNQLLRRLSKA 73
+ F +LE+L ++ T+ C ++ Y E++ ++ G + RG V+LR N+LLRRLS+
Sbjct: 101 LPFLILEELMDIHTVNECAKLYEYFETRPSLMKGIVSNRGRGP-VLLRISNELLRRLSRQ 159
Query: 74 NDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNE-TKYEKDPPDGIPV----DFNFYK 128
+ FCGRI + L+ FP ERS N++G +NT + K E PP P+ D +++K
Sbjct: 160 ENSSFCGRIDILLSKAFPPEERSGANLRGDYNTVHSFGKVELSPP-STPISDRTDLSYHK 218
Query: 129 -------TFWSLQ 134
+W LQ
Sbjct: 219 KLNTLFTAYWDLQ 231
>sp|A6QL48|IL34_BOVIN Interleukin-34 OS=Bos taurus GN=IL34 PE=2 SV=1
Length = 234
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 83 LMFLAHFFPLSERSAVNIKGVFNTSNETKYEK 114
L ++ H+FP++ R +V +GV T+N T+ ++
Sbjct: 51 LQYMKHYFPINYRVSVPYEGVLRTANVTRLQR 82
>sp|Q8R1R4|IL34_MOUSE Interleukin-34 OS=Mus musculus GN=Il34 PE=1 SV=1
Length = 235
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 83 LMFLAHFFPLSERSAVNIKGVFNTSNETKYEK 114
L ++ H+FP++ R AV +GV +N T+ +K
Sbjct: 51 LQYMKHYFPINYRIAVPYEGVLRVANITRLQK 82
>sp|A7Z5Z3|PANC_BACA2 Pantothenate synthetase OS=Bacillus amyloliquefaciens (strain
FZB42) GN=panC PE=3 SV=1
Length = 286
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 3 LYLCEKEHVEGGMIFQLLEDLTEM---------STMKNCKDIFGYIESKQDILGKLELFA 53
+YL E+E E MI++ L+ E+ + +K DI IE+ ++ EL+A
Sbjct: 189 VYLTEQERKEAPMIYKALQQGAELIRDGERNPETVIKTVTDI---IENTSGVIDYAELYA 245
Query: 54 RGKLVMLRTCN 64
+L L+T N
Sbjct: 246 YPELTPLKTLN 256
>sp|Q6ZMJ4|IL34_HUMAN Interleukin-34 OS=Homo sapiens GN=IL34 PE=1 SV=1
Length = 242
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 83 LMFLAHFFPLSERSAVNIKGVFNTSNETKYEK 114
L ++ H+FP++ + +V +GVF +N T+ ++
Sbjct: 51 LQYMKHYFPINYKISVPYEGVFRIANVTRLQR 82
>sp|Q8R003|MBNL3_MOUSE Muscleblind-like protein 3 OS=Mus musculus GN=Mbnl3 PE=2 SV=1
Length = 342
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 10 HVEGGMIFQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRR 69
HVE G + + L T +NCK Y+ + +LE+ R L+ +T +
Sbjct: 45 HVENGRVVACFDSLKGRCTRENCK----YLHPPPHLKSQLEVNGRNNLIQQKTAAAM--- 97
Query: 70 LSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFN 105
++ ++ + LA FP++ A N FN
Sbjct: 98 FAQHMQLMLQNAQMSSLA-SFPMNPSLAANPAMAFN 132
>sp|Q4KM46|IL34_RAT Interleukin-34 OS=Rattus norvegicus GN=Il34 PE=2 SV=1
Length = 234
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 83 LMFLAHFFPLSERSAVNIKGVFNTSNETK 111
L ++ H+FP++ R AV +GV +N T+
Sbjct: 51 LQYMKHYFPINYRIAVPYEGVLRVANITR 79
>sp|Q8CPR3|UGTP_STAES Processive diacylglycerol glucosyltransferase OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=ugtP PE=3 SV=1
Length = 391
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 1 IVLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKDIF---GYIESKQDILGKLELFAR 54
IV L E M ++LE ST K CKD+ G+ +I GK+ L+AR
Sbjct: 331 IVSDLTNNEETLKVMSSKMLESKVGYSTRKICKDLLDLIGHSSQPDEIYGKVPLYAR 387
>sp|Q5HQE7|UGTP_STAEQ Processive diacylglycerol glucosyltransferase OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=ugtP PE=3
SV=1
Length = 391
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 1 IVLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKDIF---GYIESKQDILGKLELFAR 54
IV L E M ++LE ST K CKD+ G+ +I GK+ L+AR
Sbjct: 331 IVSDLTNNEETLKVMSSKMLESKVGYSTRKICKDLLDLIGHSSQPDEIYGKVPLYAR 387
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.142 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,332,340
Number of Sequences: 539616
Number of extensions: 1671720
Number of successful extensions: 4293
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4280
Number of HSP's gapped (non-prelim): 14
length of query: 134
length of database: 191,569,459
effective HSP length: 100
effective length of query: 34
effective length of database: 137,607,859
effective search space: 4678667206
effective search space used: 4678667206
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)