Query 048387
Match_columns 134
No_of_seqs 91 out of 111
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 15:38:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048387.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048387hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bnk_A Early protein GP16.7; D 40.1 7.7 0.00026 25.6 0.5 34 14-48 22-55 (67)
2 1xrx_A SEQA protein; protein f 33.7 28 0.00097 21.8 2.4 30 29-71 4-33 (50)
3 3iz5_R 60S ribosomal protein L 30.7 49 0.0017 25.7 3.8 44 56-101 22-65 (188)
4 3jyw_O 60S ribosomal protein L 30.3 42 0.0014 24.1 3.2 43 56-100 2-44 (121)
5 3izc_R 60S ribosomal protein R 28.1 48 0.0017 25.7 3.4 43 56-100 22-64 (186)
6 4a17_N RPL18, 60S ribosomal pr 26.4 40 0.0014 26.0 2.6 43 56-100 23-65 (181)
7 3j21_P 50S ribosomal protein L 24.9 55 0.0019 23.2 3.0 43 56-100 7-49 (120)
8 1gwy_A Sticholysin II; cytolys 23.3 8.8 0.0003 29.8 -1.6 14 120-133 104-117 (175)
9 3lim_A Fragaceatoxin C; pore f 22.8 11 0.00038 29.3 -1.2 14 120-133 105-118 (178)
10 1vq8_O 50S ribosomal protein L 19.2 95 0.0032 21.8 3.2 31 56-86 4-34 (116)
No 1
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=40.08 E-value=7.7 Score=25.59 Aligned_cols=34 Identities=18% Similarity=0.392 Sum_probs=30.0
Q ss_pred hhHHHHHHHHhcccCHHHHHHHHhhhhcchhhhhh
Q 048387 14 GMIFQLLEDLTEMSTMKNCKDIFGYIESKQDILGK 48 (134)
Q Consensus 14 ~~~f~lleDl~d~~ti~~c~~~f~~vEsr~~~~~~ 48 (134)
.+|..++||+. ..-+..=+++..|+|.....|+-
T Consensus 22 rIP~DIIEdl~-~~~L~te~EVmnYiEnqR~~WKL 55 (67)
T 2bnk_A 22 RIPSDIIEDLV-NQRLQSEQEVLNYIETQRTYWKL 55 (67)
T ss_dssp CCCHHHHHHHH-TTCCCCSHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHH-HHhhhhHHHHHHHHHhhHhHHhh
Confidence 57999999998 77888889999999999998873
No 2
>1xrx_A SEQA protein; protein filament, LEFT-handed helix, DNA replication inhibit replication inhibitor; 2.15A {Escherichia coli} SCOP: a.43.1.7
Probab=33.75 E-value=28 Score=21.80 Aligned_cols=30 Identities=23% Similarity=0.561 Sum_probs=21.0
Q ss_pred HHHHHHHHhhhhcchhhhhhhhhcccchhHHHHHHHHHHHHhc
Q 048387 29 MKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLS 71 (134)
Q Consensus 29 i~~c~~~f~~vEsr~~~~~~~~~~~~~kl~lLR~cN~LLRRLS 71 (134)
|+-=++++.|+-|+.+.+.++ .++.||||=
T Consensus 4 IEvDdelY~YIas~t~~igEs-------------aSdiLRRll 33 (50)
T 1xrx_A 4 IEVDDELYSYIASHTKHIGES-------------ASDILRRML 33 (50)
T ss_dssp EEECHHHHHHHHTTCSSTTCC-------------HHHHHHHHH
T ss_pred eeecHHHHHHHHHhchhhccC-------------HHHHHHHHH
Confidence 444478899998888776543 467777774
No 3
>3iz5_R 60S ribosomal protein L18 (L18E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_R
Probab=30.71 E-value=49 Score=25.71 Aligned_cols=44 Identities=23% Similarity=0.254 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHhcccCCcchhhHHHHHHHhhcCCCcccccccc
Q 048387 56 KLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIK 101 (134)
Q Consensus 56 kl~lLR~cN~LLRRLSks~dt~fcGRIl~FLs~~fpl~erSglN~~ 101 (134)
.|+-||+.-.++|.+||..|.-|--+|+=.|.. |=.++..||+.
T Consensus 22 tN~yL~~Liklyr~larrt~apf~r~V~KRLf~--sr~~r~pVnLs 65 (188)
T 3iz5_R 22 DDVYLKLLVKLYRFLVRRTKSKFNAVILKRLFM--SKTNRPPLSMR 65 (188)
T ss_dssp CCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHS--CTTTCCEEEHH
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHcC--CccccCcccHH
Confidence 389999999999999999999999999966554 43466667654
No 4
>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_O
Probab=30.30 E-value=42 Score=24.10 Aligned_cols=43 Identities=23% Similarity=0.240 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHHhcccCCcchhhHHHHHHHhhcCCCccccccc
Q 048387 56 KLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNI 100 (134)
Q Consensus 56 kl~lLR~cN~LLRRLSks~dt~fcGRIl~FLs~~fpl~erSglN~ 100 (134)
.|+-||+--.++|.+||..|.-|--||.=.+.. |=.++..+|+
T Consensus 2 ~n~~l~~lvkl~~~lar~t~apl~rrvpKRgF~--sr~~~~~VnL 44 (121)
T 3jyw_O 2 DNVYLKLLVKLYTFLARRTDAPFNKVVLKALFL--SKINRPPVSV 44 (121)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCHHHHHHHHTTTS--CSTTSCCBCH
T ss_pred CCHHHHHHHHHHHHHHhhcCChHHHHHHHHHCC--CCCccceEEH
Confidence 367899999999999999999999999854433 2345566665
No 5
>3izc_R 60S ribosomal protein RPL18 (L18E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_R 3o58_R 3o5h_R 3u5e_Q 3u5i_Q 4b6a_Q
Probab=28.14 E-value=48 Score=25.69 Aligned_cols=43 Identities=23% Similarity=0.240 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHHHhcccCCcchhhHHHHHHHhhcCCCccccccc
Q 048387 56 KLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNI 100 (134)
Q Consensus 56 kl~lLR~cN~LLRRLSks~dt~fcGRIl~FLs~~fpl~erSglN~ 100 (134)
.|+.||+.-.|+|.|||..|.-|--+|+=.|.. |=.++-.||+
T Consensus 22 tN~yL~~Lvklyr~larrt~apf~r~V~KRLf~--sr~~r~~VnL 64 (186)
T 3izc_R 22 DNVYLKLLVKLYTFLARRTDAPFNKVVLKALFL--SKINRPPVSV 64 (186)
T ss_dssp SSHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHS--CTTTCCEEEH
T ss_pred CCHHHHHHHHHHHHHHhhhCChHHHHHHHHHhC--CCcccCcccH
Confidence 389999999999999999999999999865554 3335666665
No 6
>4a17_N RPL18, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_N 4a1c_N 4a1e_N
Probab=26.37 E-value=40 Score=26.04 Aligned_cols=43 Identities=19% Similarity=0.185 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHhcccCCcchhhHHHHHHHhhcCCCccccccc
Q 048387 56 KLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNI 100 (134)
Q Consensus 56 kl~lLR~cN~LLRRLSks~dt~fcGRIl~FLs~~fpl~erSglN~ 100 (134)
.|+.||+.-.|+|.+||..|.-|--+|+=.|.. |=.++..||+
T Consensus 23 tN~yL~~Lvklyr~larrt~apf~r~V~KRLf~--sr~nr~pVnL 65 (181)
T 4a17_N 23 TNVYHKLLIKLYKFLVRRTDSKFNQNILKRLSS--SRLNKFPLSL 65 (181)
T ss_dssp CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHSC--CGGGSCCEEH
T ss_pred CCHHHHHHHHHHHHHHhhcCChHHHHHHHHHcC--CccccCcccH
Confidence 389999999999999999999999999865554 3335555654
No 7
>3j21_P 50S ribosomal protein L18E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.89 E-value=55 Score=23.24 Aligned_cols=43 Identities=26% Similarity=0.268 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHHhcccCCcchhhHHHHHHHhhcCCCccccccc
Q 048387 56 KLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNI 100 (134)
Q Consensus 56 kl~lLR~cN~LLRRLSks~dt~fcGRIl~FLs~~fpl~erSglN~ 100 (134)
.|+-||+--.++|.+||..|+-|--|+.-.+.. |-.+...||+
T Consensus 7 ~n~~l~~li~~~~~~~r~~~~Pl~rrlpKrgF~--~r~~~~~VnL 49 (120)
T 3j21_P 7 TDPNLRRLIRYLRKKSNEYGVKIWKDVAWRLER--PRRQRAEVNV 49 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHS--CTTSSEEEEH
T ss_pred CCHHHHHHHHHHHHHHhccCCcHHHHHHhhcCC--CCCcceeEEH
Confidence 489999999999999999999999999876644 2334455554
No 8
>1gwy_A Sticholysin II; cytolysin, pore-forming toxin, hemolysis, cnidocyst; 1.71A {Stoichactis helianthus} SCOP: b.97.1.1 PDB: 1o71_A 1o72_A* 2ks3_A 2l38_A 2l2b_A 2ks4_A
Probab=23.33 E-value=8.8 Score=29.78 Aligned_cols=14 Identities=36% Similarity=1.343 Sum_probs=12.1
Q ss_pred CccChHHHHhhhcC
Q 048387 120 IPVDFNFYKTFWSL 133 (134)
Q Consensus 120 ~~id~~~Y~~FWsL 133 (134)
.|.|||||..+|.+
T Consensus 104 vPfDYNlYsNW~~V 117 (175)
T 1gwy_A 104 VPFDYNWYSNWWDV 117 (175)
T ss_dssp ECSCCSSCCCEEEE
T ss_pred cCccccchhheeEE
Confidence 57899999999964
No 9
>3lim_A Fragaceatoxin C; pore forming toxin, actinoporins; HET: LDA; 1.80A {Actinia fragacea} PDB: 3zwj_A 3zwg_A 1kd6_A 1iaz_A 1tzq_A
Probab=22.76 E-value=11 Score=29.26 Aligned_cols=14 Identities=36% Similarity=1.324 Sum_probs=12.1
Q ss_pred CccChHHHHhhhcC
Q 048387 120 IPVDFNFYKTFWSL 133 (134)
Q Consensus 120 ~~id~~~Y~~FWsL 133 (134)
.|.|||||..+|.+
T Consensus 105 VPyDyNlYsNW~~V 118 (178)
T 3lim_A 105 VPYDYNWYSNWWNV 118 (178)
T ss_dssp ECSCTTTCCCEEEE
T ss_pred cCcchhhhhheeEE
Confidence 57899999999974
No 10
>1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_O* 1vq5_O* 1vq6_O* 1vq7_O* 1s72_O* 1vq9_O* 1vqk_O* 1vql_O* 1vqm_O* 1vqn_O* 1vqo_O* 1vqp_O* 1yhq_O* 1yi2_O* 1yij_O* 1yit_O* 1yj9_O* 1yjn_O* 1yjw_O* 2otj_O* ...
Probab=19.22 E-value=95 Score=21.82 Aligned_cols=31 Identities=13% Similarity=0.051 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHhcccCCcchhhHHHHHH
Q 048387 56 KLVMLRTCNQLLRRLSKANDVVFCGRILMFL 86 (134)
Q Consensus 56 kl~lLR~cN~LLRRLSks~dt~fcGRIl~FL 86 (134)
.|+-||.--.++|.+||..++-+--|+-=+.
T Consensus 4 ~n~~l~~li~~~~~~~r~~~~Pl~rRlPKrG 34 (116)
T 1vq8_O 4 TNPRLSSLIADLKSAARSSGGAVWGDVAERL 34 (116)
T ss_dssp CCHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCCHhhhcccCC
Confidence 4788999999999999999999998888776
Done!