Query 048387
Match_columns 134
No_of_seqs 91 out of 111
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 15:38:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048387.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048387hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2c5ra1 a.251.1.1 (A:66-129) E 40.3 5 0.00037 24.7 1.2 34 14-48 19-52 (64)
2 d2gnoa1 a.80.1.1 (A:209-306) g 24.3 15 0.0011 23.9 1.5 17 62-78 8-24 (98)
3 d2o3fa1 a.4.1.20 (A:1-83) Puta 19.5 92 0.0067 18.7 4.8 50 16-66 5-60 (83)
4 d1iaza_ b.97.1.1 (A:) Equinato 16.8 7.7 0.00056 28.3 -1.4 14 120-133 102-115 (175)
5 d1e50b_ b.54.1.1 (B:) Core bin 15.1 15 0.0011 25.6 -0.2 44 64-107 14-70 (134)
6 d1n1ba2 a.128.1.3 (A:271-598) 13.5 41 0.003 25.4 2.1 50 11-67 180-229 (328)
7 d1z1va1 a.60.1.2 (A:33-102) St 13.2 26 0.0019 21.8 0.6 17 21-37 35-51 (70)
8 d1xrxa1 a.43.1.7 (A:1-35) SeqA 13.1 70 0.0051 17.2 2.4 19 30-48 5-23 (35)
9 d1gwya_ b.97.1.1 (A:) Sticholy 12.8 10 0.00075 27.5 -1.6 14 120-133 104-117 (175)
10 d1pd0a3 c.62.1.2 (A:301-552) S 11.8 10 0.00075 27.3 -2.0 55 27-89 94-149 (252)
No 1
>d2c5ra1 a.251.1.1 (A:66-129) Early protein gp16.7 {Bacteriophage phi-29 [TaxId: 10756]}
Probab=40.34 E-value=5 Score=24.68 Aligned_cols=34 Identities=18% Similarity=0.423 Sum_probs=29.8
Q ss_pred hhHHHHHHHHhcccCHHHHHHHHhhhhcchhhhhh
Q 048387 14 GMIFQLLEDLTEMSTMKNCKDIFGYIESKQDILGK 48 (134)
Q Consensus 14 ~~~f~lleDl~d~~ti~~c~~~f~~vEsr~~~~~~ 48 (134)
.+|..++||+.- .-+..=+++..|+|.....|+-
T Consensus 19 rIP~DIIEdl~~-~~L~te~EVmnYiEnqR~~WKL 52 (64)
T d2c5ra1 19 RIPSDIIEDLVN-QRLQSEQEVLNYIETQRTYWKL 52 (64)
T ss_dssp CCCHHHHHHHHT-TCCCSHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHH-hhhhhHHHHHHHHHhhHhHHhh
Confidence 579999999987 7778889999999999998873
No 2
>d2gnoa1 a.80.1.1 (A:209-306) gamma subunit {Thermotoga maritima [TaxId: 2336]}
Probab=24.28 E-value=15 Score=23.94 Aligned_cols=17 Identities=41% Similarity=0.774 Sum_probs=13.8
Q ss_pred HHHHHHHHhcccCCcch
Q 048387 62 TCNQLLRRLSKANDVVF 78 (134)
Q Consensus 62 ~cN~LLRRLSks~dt~f 78 (134)
-|.+||.|+||.+.-.|
T Consensus 8 acreller~sk~e~k~f 24 (98)
T d2gnoa1 8 ACRELLERFSKVESKEF 24 (98)
T ss_dssp HHHHHHHHHHHSCGGGH
T ss_pred HHHHHHHHHhhcCcchH
Confidence 59999999999875444
No 3
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=19.49 E-value=92 Score=18.70 Aligned_cols=50 Identities=12% Similarity=0.214 Sum_probs=35.5
Q ss_pred HHHHHHHHhcccCHHHHHHHHhhhhcchhhhhhh---hhc---ccchhHHHHHHHHH
Q 048387 16 IFQLLEDLTEMSTMKNCKDIFGYIESKQDILGKL---ELF---ARGKLVMLRTCNQL 66 (134)
Q Consensus 16 ~f~lleDl~d~~ti~~c~~~f~~vEsr~~~~~~~---~~~---~~~kl~lLR~cN~L 66 (134)
.+.+|++..+.+|-.+- ++.+|+-.+.+.+... .+- +-....+.|+|..|
T Consensus 5 ~l~~i~~~~~~Ls~~e~-~ia~yil~~~~~~~~~si~~lA~~~~vS~sTi~Rf~kkl 60 (83)
T d2o3fa1 5 GLAIIQSMKHKLPPSER-KLADYILAHPHKAIESTVNEISALANSSDAAVIRLCKSL 60 (83)
T ss_dssp HHHHHHHHGGGSCHHHH-HHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCCHHHH-HHHHHHHcCHHHHHHccHHHHHHHHCCCHHHHHHHHHHh
Confidence 46889999999997765 6889999987764321 122 23458999999854
No 4
>d1iaza_ b.97.1.1 (A:) Equinatoxin II (eqtII, tenebrosin C) {European sea anemone (Actinia equina) [TaxId: 6106]}
Probab=16.76 E-value=7.7 Score=28.25 Aligned_cols=14 Identities=36% Similarity=1.324 Sum_probs=11.8
Q ss_pred CccChHHHHhhhcC
Q 048387 120 IPVDFNFYKTFWSL 133 (134)
Q Consensus 120 ~~id~~~Y~~FWsL 133 (134)
.|.||+||+..|.+
T Consensus 102 VPyDYNlYsNW~~V 115 (175)
T d1iaza_ 102 VPYDYNWYSNWWNV 115 (175)
T ss_dssp ECSCTTTCCCEEEE
T ss_pred cCcchhhhhhheee
Confidence 57899999998864
No 5
>d1e50b_ b.54.1.1 (B:) Core binding factor beta, CBF {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.07 E-value=15 Score=25.58 Aligned_cols=44 Identities=18% Similarity=0.344 Sum_probs=28.4
Q ss_pred HHHHHHhcccCCcchhh--------HHHHHHHhhcC----CC-ccccccccccccCC
Q 048387 64 NQLLRRLSKANDVVFCG--------RILMFLAHFFP----LS-ERSAVNIKGVFNTS 107 (134)
Q Consensus 64 N~LLRRLSks~dt~fcG--------RIl~FLs~~fp----l~-erSglN~~g~fn~~ 107 (134)
.+|+||||+..+..+.| |-.=|...+-- ++ =.+|.|+.=.|+..
T Consensus 14 DelFrkLSresEikyTgfrdrp~eER~~RFq~~creg~~eiaFvatGtNl~L~f~p~ 70 (134)
T d1e50b_ 14 EEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQFFPA 70 (134)
T ss_dssp CHHHHTTSSCEEEEECTTSSSCHHHHHHHHHHHHHTTEEEEEETTTTBCCEEECSCT
T ss_pred hHHHHHhcccceeeeecCCcCChHHHHHHHHHhhhcCcceEEEEeeccceeEEeccC
Confidence 47999999976655554 44445544322 21 36799998888753
No 6
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]}
Probab=13.46 E-value=41 Score=25.45 Aligned_cols=50 Identities=12% Similarity=0.045 Sum_probs=24.3
Q ss_pred ccchhHHHHHHHHhcccCHHHHHHHHhhhhcchhhhhhhhhcccchhHHHHHHHHHH
Q 048387 11 VEGGMIFQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLL 67 (134)
Q Consensus 11 ~~~~~~f~lleDl~d~~ti~~c~~~f~~vEsr~~~~~~~~~~~~~kl~lLR~cN~LL 67 (134)
++.+.|..+..-++-......=+.+++|+.++.+.+. ....+.|+|||+-
T Consensus 180 vS~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-------~~~~i~RL~nDi~ 229 (328)
T d1n1ba2 180 ISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILC-------LAGIILRLPDDLG 229 (328)
T ss_dssp HHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHH-------HHHHHHHHHHHHC
T ss_pred ehhhHHHHHHHHHHhCCCccchHHHHHHHhccHHHHH-------HHHHHHHHHhhhh
Confidence 3334444444444322222222345555555544332 2367889999873
No 7
>d1z1va1 a.60.1.2 (A:33-102) Ste50p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.16 E-value=26 Score=21.76 Aligned_cols=17 Identities=24% Similarity=0.546 Sum_probs=15.1
Q ss_pred HHHhcccCHHHHHHHHh
Q 048387 21 EDLTEMSTMKNCKDIFG 37 (134)
Q Consensus 21 eDl~d~~ti~~c~~~f~ 37 (134)
.|++.-+|+++|+++++
T Consensus 35 Gd~L~eLtL~DCKeLc~ 51 (70)
T d1z1va1 35 GDLLPELCLQDCQDLCD 51 (70)
T ss_dssp TTTGGGCCHHHHHHHTT
T ss_pred hhhhhHhhHHHHHHHcC
Confidence 57889999999999986
No 8
>d1xrxa1 a.43.1.7 (A:1-35) SeqA {Escherichia coli [TaxId: 562]}
Probab=13.07 E-value=70 Score=17.18 Aligned_cols=19 Identities=21% Similarity=0.541 Sum_probs=13.3
Q ss_pred HHHHHHHhhhhcchhhhhh
Q 048387 30 KNCKDIFGYIESKQDILGK 48 (134)
Q Consensus 30 ~~c~~~f~~vEsr~~~~~~ 48 (134)
+.=++++.|+-++.+.+++
T Consensus 5 evddeLY~yIas~t~~iGE 23 (35)
T d1xrxa1 5 EVDDELYSYIASHTKHIGE 23 (35)
T ss_dssp EECHHHHHHHHTTCSSTTC
T ss_pred eehHHHHHHHHHhhhHhcc
Confidence 3346788888888776654
No 9
>d1gwya_ b.97.1.1 (A:) Sticholysin II {Carribean sea anemone (Stoichactis helianthus) [TaxId: 6123]}
Probab=12.80 E-value=10 Score=27.54 Aligned_cols=14 Identities=36% Similarity=1.343 Sum_probs=11.8
Q ss_pred CccChHHHHhhhcC
Q 048387 120 IPVDFNFYKTFWSL 133 (134)
Q Consensus 120 ~~id~~~Y~~FWsL 133 (134)
.|.||+||+..|.+
T Consensus 104 VPyDYNlYsNW~aV 117 (175)
T d1gwya_ 104 VPFDYNWYSNWWDV 117 (175)
T ss_dssp ECSCCSSCCCEEEE
T ss_pred cCcchhhhhhheee
Confidence 57899999998863
No 10
>d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.81 E-value=10 Score=27.30 Aligned_cols=55 Identities=13% Similarity=0.226 Sum_probs=36.2
Q ss_pred cCHHHHHHHH-hhhhcchhhhhhhhhcccchhHHHHHHHHHHHHhcccCCcchhhHHHHHHHhh
Q 048387 27 STMKNCKDIF-GYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHF 89 (134)
Q Consensus 27 ~ti~~c~~~f-~~vEsr~~~~~~~~~~~~~kl~lLR~cN~LLRRLSks~dt~fcGRIl~FLs~~ 89 (134)
.++++|+..+ +++|+-...+....-.+++=-.-|+.+..+|+. ..|||++|.+..
T Consensus 94 v~~~e~~~~i~~~L~~l~~~~~~~~~~~~~~G~Al~~a~~~l~~--------~gGkI~~f~sg~ 149 (252)
T d1pd0a3 94 VSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGG--------VGGKIIVVSGTL 149 (252)
T ss_dssp EETTTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTT--------TCEEEEEEESSC
T ss_pred eeHHHHHHHHHHHHHhChhhcccCCCCcccHHHHHHHHHHHHhc--------CCCEEEEEecCC
Confidence 4678888766 566655444433333344446778899998862 369999998854
Done!