BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048388
(477 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZX3|A Chain A, Crystal Structure And Domain Rotation Of Ntpdase1 Cd39
pdb|3ZX3|B Chain B, Crystal Structure And Domain Rotation Of Ntpdase1 Cd39
pdb|3ZX3|C Chain C, Crystal Structure And Domain Rotation Of Ntpdase1 Cd39
pdb|3ZX3|D Chain D, Crystal Structure And Domain Rotation Of Ntpdase1 Cd39
Length = 452
Score = 128 bits (321), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 115/422 (27%), Positives = 178/422 (42%), Gaps = 57/422 (13%)
Query: 70 YAVIFDAGSSGSRVHVYCFD-QNLDLVPIGKDLELFVQTKPGLSAYASDPQAAANSLASL 128
Y ++ DAGSS + +++Y + + + + + LE PG+S YA A LA
Sbjct: 35 YGIVLDAGSSHTNLYIYKWPAEKENDTGVVQQLEECQVKGPGISKYAQKTDEIAAYLAEC 94
Query: 129 LDKAQSVVPQDLRPKTPVKVGATAGLRQLGVDA---SDRILQAV-RDLLKYKSAFKSKPE 184
+ + +P + +TPV +GATAG+R L +++ +D +L AV R L Y F+
Sbjct: 95 MKMSTERIPASKQHQTPVYLGATAGMRLLRMESKQSADEVLAAVSRSLKSYPFDFQG--- 151
Query: 185 WVTVLDGSQEGSYQWVTINYLLGNLGKKYSNTVGVVDLGGGSVQMAYAISEKDAANAPTV 244
++ G +EG+Y W+TINYLLG +T G +DLGG S Q+ + +
Sbjct: 152 -AKIITGQEEGAYGWITINYLLGRFKTPGGSTFGALDLGGASTQITFV----PLNSTLEA 206
Query: 245 PEGEDQYVNEMYLMGTKYYLYVHSYLHYG----LLAARTEILKVTKDS--DNPCILAGY- 297
PE Q+ L GT Y +Y HS+L YG L + ++V+ +PC GY
Sbjct: 207 PETSLQFR----LYGTDYTVYTHSFLCYGKDQALWQKLAQDIQVSSGGILKDPCFYPGYK 262
Query: 298 ---DGSYKYGGE---------EYKASASPSGSNIEECQSVAIKALKVNDTCTHMQCTFXX 345
+ S YG + + E+C +K N C + QC F
Sbjct: 263 KVVNVSELYGTPCTKRFEKKLPFNQFQVQGTGDYEQCHQSILKIFN-NSHCPYSQCAFNG 321
Query: 346 XX----XXXXXXXQKNMFVASFFFDRAAEAGFIDQNEPVAKVRPGDFESAAKRACQTKLE 401
FV FF A ++ + E + ++ K C E
Sbjct: 322 VFLPPLQGSFGAFSAFYFVMDFFKKMANDS--VSSQEKMTEI--------TKNFCSKPWE 371
Query: 402 DAKSIYPRVDESNLPYICMDLVYQHALLVVGFGL--DPWQEITLVKQIKYQNSLVEAAWP 459
+ K+ YP V E L C Y +LL+ G+ W +I + +IK N A W
Sbjct: 372 EVKASYPTVKEKYLSEYCFSGTYILSLLLQGYNFTGTSWDQIHFMGKIKDSN----AGWT 427
Query: 460 LG 461
LG
Sbjct: 428 LG 429
>pdb|3ZX0|A Chain A, Ntpdase1 In Complex With Heptamolybdate
pdb|3ZX0|B Chain B, Ntpdase1 In Complex With Heptamolybdate
pdb|3ZX0|C Chain C, Ntpdase1 In Complex With Heptamolybdate
pdb|3ZX0|D Chain D, Ntpdase1 In Complex With Heptamolybdate
pdb|3ZX2|A Chain A, Ntpdase1 In Complex With Decavanadate
pdb|3ZX2|B Chain B, Ntpdase1 In Complex With Decavanadate
pdb|3ZX2|C Chain C, Ntpdase1 In Complex With Decavanadate
pdb|3ZX2|D Chain D, Ntpdase1 In Complex With Decavanadate
Length = 452
Score = 127 bits (320), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 115/425 (27%), Positives = 181/425 (42%), Gaps = 63/425 (14%)
Query: 70 YAVIFDAGSSGSRVHVYCFD-QNLDLVPIGKDLELFVQTKPGLSAYASDPQAAANSLASL 128
Y ++ DAGSS + +++Y + + + + + LE PG+S YA A LA
Sbjct: 35 YGIVLDAGSSHTNLYIYKWPAEKENDTGVVQQLEECQVKGPGISKYAQKTDEIAAYLAEC 94
Query: 129 LDKAQSVVPQDLRPKTPVKVGATAGLRQLGVDA---SDRILQAV-RDLLKYKSAFKSKPE 184
+ + +P + +TPV +GATAG+R L +++ +D +L AV R L Y F+
Sbjct: 95 MKMSTERIPASKQHQTPVYLGATAGMRLLRMESKQSADEVLAAVSRSLKSYPFDFQG--- 151
Query: 185 WVTVLDGSQEGSYQWVTINYLLGNLGKKYSNTVGVVDLGGGSVQMAYAISEKDAANAPTV 244
++ G +EG+Y W+TINYLLG +T G +DLGG S Q+ + +
Sbjct: 152 -AKIITGQEEGAYGWITINYLLGRFKTPGGSTFGALDLGGSSTQITFV----PLNSTLEA 206
Query: 245 PEGEDQYVNEMYLMGTKYYLYVHSYLHYG----LLAARTEILKVTKDS--DNPCILAGY- 297
PE Q+ L GT Y +Y HS+L YG L + ++V+ +PC GY
Sbjct: 207 PETSLQFR----LYGTDYTVYTHSFLCYGKDQALWQKLAQDIQVSSGGILKDPCFYPGYK 262
Query: 298 ---DGSYKYGG------------EEYKASASPSGSNIEECQSVAIKALKVNDTCTHMQCT 342
+ S YG +++ + + E+C +K N C + QC
Sbjct: 263 KVVNVSELYGTPCTKRFEKKLPFNQFQVQGT---GDYEQCHQSILKIFN-NSHCPYSQCA 318
Query: 343 FXXXX----XXXXXXXQKNMFVASFFFDRAAEAGFIDQNEPVAKVRPGDFESAAKRACQT 398
F FV FF A ++ + E + ++ K C
Sbjct: 319 FNGVFLPPLQGSFGAFSAFYFVMDFFKKMANDS--VSSQEKMTEI--------TKNFCSK 368
Query: 399 KLEDAKSIYPRVDESNLPYICMDLVYQHALLVVGFGL--DPWQEITLVKQIKYQNSLVEA 456
E+ K+ YP V E L C Y +LL+ G+ W +I + +IK N A
Sbjct: 369 PWEEVKASYPTVKEKYLSEYCFSGTYILSLLLQGYNFTGTSWDQIHFMGKIKDSN----A 424
Query: 457 AWPLG 461
W LG
Sbjct: 425 GWTLG 429
>pdb|3CJ1|A Chain A, Structure Of Rattus Norvegicus Ntpdase2
pdb|3CJ7|A Chain A, Structure Of Rattus Norvegicus Ntpdase2 In Complex With
Amp
pdb|3CJ9|A Chain A, Structure Of Rattus Norvegicus Ntpdase2 In Complex With
Calcium, Amp And Phosphate
pdb|3CJA|A Chain A, Structure Of Rattus Norvegicus Ntpdase2 In Complex With
Calcium And Amppnp
Length = 456
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 119/429 (27%), Positives = 187/429 (43%), Gaps = 66/429 (15%)
Query: 70 YAVIFDAGSSGSRVHVYCF--DQNLDLVPIGKDLELFVQTKPGLSAYASDPQAAANSLAS 127
Y ++ DAGSS + + VY + D+ D +G+ VQ G+S+YA+DP A SL
Sbjct: 35 YGIVLDAGSSHTSMFVYKWPADKENDTGIVGQHSSCDVQGG-GISSYANDPSKAGQSLVR 93
Query: 128 LLDKAQSVVPQDLRPKTPVKVGATAGLRQLGV---DASDRILQAV-RDLLKYKSAFKSKP 183
L++A VP+D TP+ +GATAG+R L + +A+ R+L+AV + L +Y F+
Sbjct: 94 CLEQALRDVPRDRHASTPLYLGATAGMRLLNLTSPEATARVLEAVTQTLTQYPFDFRG-- 151
Query: 184 EWVTVLDGSQEGSYQWVTINYLLGNLGK---------KYSNTVGVVDLGGGSVQMAYAIS 234
+L G EG + WVT NYLL N K T+G +DLGG S Q+ + +
Sbjct: 152 --ARILSGQDEGVFGWVTANYLLENFIKYGWVGRWIRPRKGTLGAMDLGGASTQITFETT 209
Query: 235 EKDAANAPTVPEGEDQYVNEMYLMGTKYYLYVHSYLHYG-------LLAARTEILKVTKD 287
+P+ G + ++ L G Y +Y HS+L YG LLA+ +I +
Sbjct: 210 ------SPSEDPGNEVHLR---LYGQHYRVYTHSFLCYGRDQILLRLLASALQIHRF--- 257
Query: 288 SDNPCILAGYDG------------SYKYGGEEYKASA--SPSG-SNIEECQSVAIKALKV 332
+PC GY + + SA S SG SN C+ + + +
Sbjct: 258 --HPCWPKGYSTQVLLQEVYQSPCTMGQRPRAFNGSAIVSLSGTSNATLCRDLVSRLFNI 315
Query: 333 NDTCTHMQCTFXXXXXXXXXXXQKNMFVASFFFDRAAEAGFIDQNEPVAKVRPGDFESAA 392
+ +C QC+F F+A F + PV ++ E A
Sbjct: 316 S-SCPFSQCSFNGVFQPPVA----GNFIAFSAFYYTVDFLTTVMGLPVGTLK--QLEEAT 368
Query: 393 KRACQTKLEDAKSIYPRVDESNLPYICMDLVYQHALLVVGFGLDPWQEITLVKQIKYQNS 452
+ C + ++ P ++ L C ++ H LL G+ D +V Q K ++
Sbjct: 369 EITCNQTWTELQARVPG-QKTRLADYCAVAMFIHQLLSRGYHFDERSFREVVFQKKAADT 427
Query: 453 LVEAAWPLG 461
V W LG
Sbjct: 428 AV--GWALG 434
>pdb|3AAP|A Chain A, Crystal Structure Of Lp1ntpdase From Legionella
Pneumophila
pdb|3AAQ|A Chain A, Crystal Structure Of Lp1ntpdase From Legionella
Pneumophila In Complex With The Inhibitor Arl 67156
pdb|3AAR|A Chain A, Crystal Structure Of Lp1ntpdase From Legionella
Pneumophila In Complex With Amppnp
Length = 353
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 94/376 (25%), Positives = 150/376 (39%), Gaps = 50/376 (13%)
Query: 73 IFDAGSSGSRVHVYCFDQNLDLVPIGKDLELFVQTKPGLSAYASDPQAAANSLASLLDKA 132
+ DAGS+GSR+H+Y +D + PI + + KPG ++ + L LL A
Sbjct: 7 VIDAGSTGSRLHIYSYDTDDTNTPIHIEEIWNKKIKPGFASIQPNSVTIDAYLTMLLADA 66
Query: 133 QSVVPQDLRPKTPVKVGATAGLRQLGVDASDRILQAVRDLLKYKSAFKSKPEWVTV---- 188
PV ATAG+R L + D L+Y F+ + +W V
Sbjct: 67 P-------IHNIPVYFYATAGMRLLPQSQQKK----YYDELEY--WFRQQSQWQLVEAKT 113
Query: 189 LDGSQEGSYQWVTINYLLGNLGKKYSNTVGVVDLGGGSVQMAYAISEKDAANAPTVPEGE 248
+ G+ E + W+ +NY L L + +VGV+D+GG SVQ+ + + P E
Sbjct: 114 ITGNDEALFDWLAVNYKLDTLKSVQNKSVGVMDMGGASVQIVFPM--------PKNAEIS 165
Query: 249 DQYVNEMYLMGTKYYLYVHSYLHYGLLAARTEILKVTKDSDNPCILAGYDGSYKYGGEEY 308
E+ + G LYVHS+L G + L ++P A Y E
Sbjct: 166 KHNQVELNIYGQNINLYVHSFLGLGQTEMSHQFL------NSPSCFA---NDYPLPDGES 216
Query: 309 KASASPSGSNIEECQSVAIKALKVNDTCTHMQCTFXXXXXXXXXXXQKNMFVASFFFDRA 368
+PS EE S+ KVN + N+ + F
Sbjct: 217 GQGNAPSCK--EEVTSLMNSVHKVNQQIQPL-LALNPVNEWYSIGGISNLASSQLFHFEN 273
Query: 369 AEAGFIDQNEPVAKVRPGDFESAAKRACQTKLEDAKSIYPRVDESNLPYICMDLVYQHAL 428
+E +Q + ++ GD + C + + YP D+ L C+ Y +AL
Sbjct: 274 SE--LTNQ----SLLQQGD-----NQICHQQWDILNGQYP--DDEYLYQYCLLSSYYYAL 320
Query: 429 LVVGFGLDPWQEITLV 444
+V G+G++P Q I +
Sbjct: 321 MVDGYGINPNQTIHYI 336
>pdb|4A5A|A Chain A, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
pdb|4A5A|B Chain B, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
pdb|4A5A|C Chain C, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
pdb|4A5A|D Chain D, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
Length = 611
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/316 (22%), Positives = 124/316 (39%), Gaps = 75/316 (23%)
Query: 72 VIFDAGSSGSRVHVY------CFDQ-------NLDLVPIGKD-------LELFVQTKPG- 110
V+ DAGSS +R +V+ C ++ ++ L+ GK LE ++ T G
Sbjct: 43 VVIDAGSSSTRTNVFLAKTRSCPNKGRSIDPDSIQLIGAGKRFAGLRVVLEEWLDTYAGK 102
Query: 111 -----------LSAYASDPQAAANSLASLLDK-AQSVVPQDLRPKTPVKVGA-------- 150
L Y A L LL++ +++ L K V+V A
Sbjct: 103 DWESRPVDARLLFQYVPQMHEGAKKLMQLLEEDTVAILDSQLNEKQKVQVKALGIPVMLC 162
Query: 151 -TAGLRQLGVDASDRILQAVRDLLKYKS-----AFKSKPEWVTVLDGSQEGSYQWVTINY 204
TAG+R D + +R L+ S F + P W + G++EG + ++T+N+
Sbjct: 163 STAGVRDFHEWYRDALFVLLRHLINNPSPAHGYKFFTNPFWTRPITGAEEGLFAFITLNH 222
Query: 205 LLGNLG--------------KKYSNTVGVVDLGGGSVQMAYAISEKDA--ANAPTVPEGE 248
L LG + ++ GVV++GG S Q+ + + E ++ V
Sbjct: 223 LSRRLGEDPARSMIDEYGVKQSRNDLAGVVEVGGASAQIVFPLQEGTVLPSSVRAVNLQR 282
Query: 249 DQYVNEMYLMGTKYYLYVHSYLHYGLLAARTEILKVTKDSD---------NPCILAGYDG 299
++ + E Y + S++ G+ ++ LK +D NPC+ G+
Sbjct: 283 ERLLPERYPSADVVSV---SFMQLGMASSAGLFLKELCSNDEFLQGGICSNPCLFKGFQQ 339
Query: 300 SYKYGGEEYKASASPS 315
S G E + S S
Sbjct: 340 SCSAGEVEVRPDGSAS 355
>pdb|4A57|A Chain A, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|B Chain B, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|C Chain C, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|D Chain D, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A59|A Chain A, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|B Chain B, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|C Chain C, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|D Chain D, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
Length = 611
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/316 (22%), Positives = 124/316 (39%), Gaps = 75/316 (23%)
Query: 72 VIFDAGSSGSRVHVY------CFDQ-------NLDLVPIGKD-------LELFVQTKPG- 110
V+ DAGSS +R +V+ C ++ ++ L+ GK LE ++ T G
Sbjct: 43 VVIDAGSSSTRTNVFLAKTRSCPNKGRSIDPDSIQLIGAGKRFAGLRVVLEEWLDTYAGK 102
Query: 111 -----------LSAYASDPQAAANSLASLLDK-AQSVVPQDLRPKTPVKVGA-------- 150
L Y A L LL++ +++ L K V+V A
Sbjct: 103 DWESRPVDARLLFQYVPQMHEGAKKLMQLLEEDTVAILDSQLNEKQKVQVKALGIPVMLC 162
Query: 151 -TAGLRQLGVDASDRILQAVRDLLKYKS-----AFKSKPEWVTVLDGSQEGSYQWVTINY 204
TAG+R D + +R L+ S F + P W + G++EG + ++T+N+
Sbjct: 163 STAGVRDFHEWYRDALFVLLRHLINNPSPAHGYKFFTNPFWTRPITGAEEGLFAFITLNH 222
Query: 205 LLGNLGKK--------------YSNTVGVVDLGGGSVQMAYAISEKDA--ANAPTVPEGE 248
L LG+ ++ GVV++GG S Q+ + + E ++ V
Sbjct: 223 LSRRLGEDPARCMIDEYGVKQCRNDLAGVVEVGGASAQIVFPLQEGTVLPSSVRAVNLQR 282
Query: 249 DQYVNEMYLMGTKYYLYVHSYLHYGLLAARTEILKVTKDSD---------NPCILAGYDG 299
++ + E Y + S++ G+ ++ LK +D NPC+ G+
Sbjct: 283 ERLLPERYPSADVVSV---SFMQLGMASSAGLFLKELCSNDEFLQGGICSNPCLFKGFQQ 339
Query: 300 SYKYGGEEYKASASPS 315
S G E + S S
Sbjct: 340 SCSAGEVEVRPDGSAS 355
>pdb|4A5B|A Chain A, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 1
(Ntpdase1)
pdb|4A5B|B Chain B, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 1
(Ntpdase1)
Length = 611
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 95/221 (42%), Gaps = 35/221 (15%)
Query: 125 LASLLDKAQSVVPQDLRPKTPVKVGATAGLRQLGVDASDRILQAVRDLLKYKS-----AF 179
L S L++ Q V + L PV + +TAG+R D + +R L+ S F
Sbjct: 140 LDSQLNEEQKVQVKAL--GIPVMLCSTAGVRDFHEWYRDALFVLLRHLINNPSPAHGYKF 197
Query: 180 KSKPEWVTVLDGSQEGSYQWVTINYLLGNLGK------------KYS--NTVGVVDLGGG 225
+ P W + G++EG + ++T+N+L LG+ K+S + GVV++GG
Sbjct: 198 FTNPFWTRPITGAEEGLFAFITLNHLSRRLGEDPARSMIDEYGVKHSRNDLAGVVEVGGA 257
Query: 226 SVQMAYAISEKDA--ANAPTVPEGEDQYVNEMYLMGTKYYLYVHSYLHYGLLAARTEILK 283
S Q+ + + E ++ V ++ + E Y + S++ G+ ++ LK
Sbjct: 258 SAQIVFPLQEGTVLPSSVRAVNLQRERLLPERYPSADVVSV---SFMQLGMASSAGLFLK 314
Query: 284 VTKDSD---------NPCILAGYDGSYKYGGEEYKASASPS 315
+D NPC+ G+ S G E + S S
Sbjct: 315 ELCSNDEFLQGGICSNPCLFKGFQQSCSAGEVEVRPDGSAS 355
>pdb|3AGR|A Chain A, Crystal Structure Of Nucleoside Triphosphate Hydrolases
From Neospora Caninum
pdb|3AGR|B Chain B, Crystal Structure Of Nucleoside Triphosphate Hydrolases
From Neospora Caninum
Length = 602
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 19/113 (16%)
Query: 145 PVKVGATAGLRQLGVDASDRILQAVRDLLKYKS-----AFKSKPEWVTVLDGSQEGSYQW 199
PV + +TAG+R + + +R L+ + F + PEW + G++EG Y +
Sbjct: 158 PVLLCSTAGVRDFHDWYREALFVILRFLINHPKPGHGYKFFTNPEWTRPITGAEEGLYAF 217
Query: 200 VTINYLLGNLGKK--------------YSNTVGVVDLGGGSVQMAYAISEKDA 238
+ +N+L G LG+ ++ VGVV++GG S Q+ + + + A
Sbjct: 218 LALNHLSGRLGEDPARCYVDEYGMKQCRNDLVGVVEVGGASTQIVFPLQDGTA 270
>pdb|2G59|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase From Homo Sapiens
pdb|2G59|B Chain B, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase From Homo Sapiens
Length = 297
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 112 SAYASDPQAAANSLASLLDKAQSVVPQDLRPKTPVKVGATAGLRQLGV-DASDRILQAVR 170
+A+ AN+ S+L V Q + K P+ + +AG+ + G A DR+LQ +R
Sbjct: 187 TAWPDHGVPTANAAESILQFVHMVRQQATKSKGPMIIHCSAGVGRTGTFIALDRLLQHIR 246
Query: 171 D 171
D
Sbjct: 247 D 247
>pdb|2GJT|A Chain A, Crystal Structure Of The Human Receptor Phosphatase Ptpro
pdb|2GJT|B Chain B, Crystal Structure Of The Human Receptor Phosphatase Ptpro
Length = 295
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 121 AANSLASLLDKAQSVVPQDLRPKTPVKVGATAGLRQLGV-DASDRILQAVRD 171
AN+ S+L V Q + K P+ + +AG+ + G A DR+LQ +RD
Sbjct: 194 TANAAESILQFVHMVRQQATKSKGPMIIHCSAGVGRTGTFIALDRLLQHIRD 245
>pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase In Complex With
Mg-Adp-Alf3
pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
Length = 589
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 65 KLSKSYAVIFDAGSSGSRVHVYCFD--QNLDLV---PIGKDLELFVQTKPGLSAYASDPQ 119
K S S A G RV + D N+ V IG ++ + + PGLSA DPQ
Sbjct: 21 KTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNTIQ-AIASVPGLSALEIDPQ 79
Query: 120 AAANS-LASLLDKAQSVVPQDL 140
AAA A ++D + V+P D+
Sbjct: 80 AAAQQYRARIVDPIKGVLPDDV 101
>pdb|1SL4|A Chain A, Crystal Structure Of Dc-Sign Carbohydrate Recognition
Domain Complexed With Man4
pdb|2IT6|A Chain A, Crystal Structure Of Dcsign-Crd With Man2
Length = 155
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 170 RDLLKYKSAFKSKPEWVTVLDGSQEGSYQWVTINYLLGNLGKKYSN 215
++ L+ +S+ ++ W+ + D +QEG++QWV + LL + K+Y N
Sbjct: 51 QNFLQLQSSRSNRFTWMGLSDLNQEGTWQWVDGSPLLPSF-KQYWN 95
>pdb|1SL5|A Chain A, Crystal Structure Of Dc-Sign Carbohydrate Recognition
Domain Complexed With Lnfp Iii (Dextra L504).
pdb|2IT5|A Chain A, Crystal Structure Of Dcsign-crd With Man6
Length = 139
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 170 RDLLKYKSAFKSKPEWVTVLDGSQEGSYQWVTINYLLGNLGKKYSN 215
++ L+ +S+ ++ W+ + D +QEG++QWV + LL + K+Y N
Sbjct: 51 QNFLQLQSSRSNRFTWMGLSDLNQEGTWQWVDGSPLLPSF-KQYWN 95
>pdb|1K9I|A Chain A, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|B Chain B, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|C Chain C, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|D Chain D, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|E Chain E, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|F Chain F, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|G Chain G, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|H Chain H, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|I Chain I, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|J Chain J, Complex Of Dc-Sign And Glcnac2man3
Length = 156
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 170 RDLLKYKSAFKSKPEWVTVLDGSQEGSYQWVTINYLLGNLGKKYSN 215
++ L+ +S+ ++ W+ + D +QEG++QWV + LL + K+Y N
Sbjct: 52 QNFLQLQSSRSNRFTWMGLSDLNQEGTWQWVDGSPLLPSF-KQYWN 96
>pdb|2B6B|D Chain D, Cryo Em Structure Of Dengue Complexed With Crd Of Dc-Sign
Length = 175
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 170 RDLLKYKSAFKSKPEWVTVLDGSQEGSYQWVTINYLLGNLGKKYS----NTVGVVDL 222
++ L+ +S+ ++ W+ + D +QEG++QWV + LL + + ++ N VG D
Sbjct: 71 QNFLQLQSSRSNRFTWMGLSDLNQEGTWQWVDGSPLLPSFKQYWNRGEPNNVGEEDC 127
>pdb|1T6D|A Chain A, Miras Phasing Of The Aquifex Aeolicus PpxGPPA PHOSPHATASE:
CRYSTAL Structure Of The Type Ii Variant
pdb|1T6D|B Chain B, Miras Phasing Of The Aquifex Aeolicus PpxGPPA PHOSPHATASE:
CRYSTAL Structure Of The Type Ii Variant
Length = 315
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 186 VTVLDGSQEGSYQWVTINYLLGNLGKKYSNTVGVVDLGGGSVQMAYA 232
V V+ QEG Y ++ + Y L K V VVD GGGS + +
Sbjct: 114 VEVITPEQEGRYAYLAVAYSL-----KPEGEVXVVDQGGGSTEYVFG 155
>pdb|2XR6|A Chain A, Crystal Structure Of The Complex Of The Carbohydrate
Recognition Domain Of Human Dc-Sign With Pseudo
Trimannoside Mimic
Length = 170
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 170 RDLLKYKSAFKSKPEWVTVLDGSQEGSYQWVTINYLLGNLGKKYS----NTVGVVDL 222
++ L+ +S+ ++ W+ + D +QEG++QWV + LL + + ++ N VG D
Sbjct: 66 QNFLQLQSSRSNRFTWMGLSDLNQEGTWQWVDGSPLLPSFKQYWNRGEPNNVGEEDC 122
>pdb|2XR5|A Chain A, Crystal Structure Of The Complex Of The Carbohydrate
Recognition Domain Of Human Dc-Sign With Pseudo
Dimannoside Mimic
Length = 166
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 170 RDLLKYKSAFKSKPEWVTVLDGSQEGSYQWVTINYLLGNLGKKYS----NTVGVVDL 222
++ L+ +S+ ++ W+ + D +QEG++QWV + LL + + ++ N VG D
Sbjct: 62 QNFLQLQSSRSNRFTWMGLSDLNQEGTWQWVDGSPLLPSFKQYWNRGEPNNVGEEDC 118
>pdb|1T6C|A Chain A, Structural Characterization Of The PpxGPPA PROTEIN FAMILY:
CRYSTAL Structure Of The Aquifex Aeolicus Family Member
Length = 315
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 186 VTVLDGSQEGSYQWVTINYLLGNLGKKYSNTVGVVDLGGGSVQMAYA 232
V V+ QEG Y ++ + Y L K V VVD GGGS + +
Sbjct: 114 VEVITPEQEGRYAYLAVAYSL-----KPEGEVCVVDQGGGSTEYVFG 155
>pdb|2J4R|A Chain A, Structural Study Of The Aquifex Aeolicus Ppx-Gppa Enzyme
pdb|2J4R|B Chain B, Structural Study Of The Aquifex Aeolicus Ppx-Gppa Enzyme
Length = 308
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 186 VTVLDGSQEGSYQWVTINYLLGNLGKKYSNTVGVVDLGGGSVQMAYA 232
V V+ QEG Y ++ + Y L K V VVD GGGS + +
Sbjct: 109 VEVITPEQEGRYAYLAVAYSL-----KPEGEVCVVDQGGGSTEYVFG 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,395,683
Number of Sequences: 62578
Number of extensions: 549398
Number of successful extensions: 1409
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1384
Number of HSP's gapped (non-prelim): 25
length of query: 477
length of database: 14,973,337
effective HSP length: 102
effective length of query: 375
effective length of database: 8,590,381
effective search space: 3221392875
effective search space used: 3221392875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)