Query 048388
Match_columns 477
No_of_seqs 234 out of 1005
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 09:02:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048388.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048388hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1385 Nucleoside phosphatase 100.0 2.7E-95 6E-100 734.2 29.9 437 3-471 4-448 (453)
2 KOG1386 Nucleoside phosphatase 100.0 1.1E-88 2.5E-93 700.1 29.2 378 67-468 7-427 (501)
3 PF01150 GDA1_CD39: GDA1/CD39 100.0 4.9E-90 1.1E-94 728.9 -8.3 398 66-472 5-426 (434)
4 COG5371 Golgi nucleoside dipho 100.0 3.7E-38 8E-43 321.7 15.0 388 68-470 119-538 (549)
5 COG5371 Golgi nucleoside dipho 100.0 4.8E-39 1E-43 328.2 2.2 375 68-464 3-430 (549)
6 TIGR03706 exo_poly_only exopol 99.8 6.3E-18 1.4E-22 171.1 14.7 273 72-436 3-281 (300)
7 COG0248 GppA Exopolyphosphatas 99.7 1.8E-17 3.9E-22 177.0 15.3 145 69-235 4-149 (492)
8 PRK11031 guanosine pentaphosph 99.7 2.9E-17 6.4E-22 176.9 15.4 145 69-234 6-151 (496)
9 PRK10854 exopolyphosphatase; P 99.7 6.4E-17 1.4E-21 175.0 14.8 144 70-234 12-156 (513)
10 PF02541 Ppx-GppA: Ppx/GppA ph 99.4 3E-13 6.4E-18 135.8 9.2 263 84-436 1-264 (285)
11 PRK15080 ethanolamine utilizat 97.6 0.00055 1.2E-08 68.5 11.0 129 67-232 22-152 (267)
12 PRK09472 ftsA cell division pr 94.9 0.41 8.9E-06 51.0 13.5 64 69-136 8-72 (420)
13 PRK13929 rod-share determining 93.7 1.4 3.1E-05 45.4 14.0 95 117-232 73-167 (335)
14 TIGR01174 ftsA cell division p 93.3 2.5 5.4E-05 44.1 15.2 64 71-138 2-66 (371)
15 PF06723 MreB_Mbl: MreB/Mbl pr 92.6 1.5 3.3E-05 45.4 12.0 93 117-232 70-162 (326)
16 PF00370 FGGY_N: FGGY family o 92.1 0.53 1.1E-05 45.9 7.7 79 70-155 1-79 (245)
17 PRK13930 rod shape-determining 92.0 4 8.7E-05 41.6 14.4 18 215-232 152-169 (335)
18 TIGR02529 EutJ ethanolamine ut 91.4 1.7 3.6E-05 42.8 10.4 122 74-232 2-125 (239)
19 PRK13927 rod shape-determining 91.3 4.2 9E-05 41.6 13.6 18 215-232 148-165 (334)
20 PRK10719 eutA reactivating fac 90.3 4.5 9.7E-05 43.8 13.0 146 69-235 6-166 (475)
21 KOG2517 Ribulose kinase and re 88.4 1.9 4E-05 47.2 8.5 86 68-156 5-90 (516)
22 COG0849 ftsA Cell division ATP 88.2 2.4 5.1E-05 45.4 9.0 66 70-139 7-73 (418)
23 TIGR00241 CoA_E_activ CoA-subs 87.1 2.7 5.8E-05 41.4 8.3 108 70-232 1-108 (248)
24 TIGR00904 mreB cell shape dete 87.1 12 0.00027 38.2 13.5 18 215-232 150-167 (333)
25 PF06277 EutA: Ethanolamine ut 84.8 20 0.00043 39.0 13.7 143 70-235 4-163 (473)
26 PRK13928 rod shape-determining 81.9 11 0.00024 38.7 10.4 18 215-232 147-164 (336)
27 PRK13411 molecular chaperone D 81.3 21 0.00046 40.4 13.1 41 185-232 163-203 (653)
28 cd00012 ACTIN Actin; An ubiqui 80.5 18 0.0004 37.4 11.6 20 215-234 143-162 (371)
29 PRK01433 hscA chaperone protei 79.7 27 0.00058 39.2 13.1 56 160-232 155-210 (595)
30 COG4972 PilM Tfp pilus assembl 79.0 38 0.00082 35.2 12.7 19 217-235 195-213 (354)
31 smart00268 ACTIN Actin. ACTIN 78.5 14 0.0003 38.3 9.9 20 215-234 143-162 (373)
32 PTZ00294 glycerol kinase-like 77.3 8.7 0.00019 41.9 8.2 63 69-135 2-64 (504)
33 PRK10331 L-fuculokinase; Provi 77.0 10 0.00022 40.9 8.6 60 70-134 3-65 (470)
34 PLN02295 glycerol kinase 76.9 8.3 0.00018 42.1 7.9 63 70-136 1-63 (512)
35 COG1070 XylB Sugar (pentulose 76.5 8 0.00017 42.2 7.7 65 68-135 3-67 (502)
36 COG2971 Predicted N-acetylgluc 75.7 7.3 0.00016 39.8 6.5 57 67-134 3-60 (301)
37 COG0554 GlpK Glycerol kinase [ 75.4 6.2 0.00013 42.7 6.2 61 68-134 4-66 (499)
38 PF11104 PilM_2: Type IV pilus 73.5 51 0.0011 33.9 12.4 101 74-183 2-108 (340)
39 TIGR02628 fuculo_kin_coli L-fu 72.0 13 0.00028 40.1 7.9 61 70-134 2-64 (465)
40 PF14450 FtsA: Cell division p 71.5 2.5 5.4E-05 36.9 1.8 59 71-135 1-62 (120)
41 PRK10939 autoinducer-2 (AI-2) 71.2 15 0.00032 40.2 8.2 61 68-133 2-65 (520)
42 TIGR03192 benz_CoA_bzdQ benzoy 70.6 22 0.00048 36.3 8.6 19 69-87 32-50 (293)
43 PF01869 BcrAD_BadFG: BadF/Bad 70.1 8.8 0.00019 38.0 5.6 72 73-156 2-74 (271)
44 PRK13410 molecular chaperone D 66.1 1.1E+02 0.0024 34.9 13.9 93 117-232 111-204 (668)
45 smart00842 FtsA Cell division 66.0 15 0.00032 34.4 6.0 62 72-138 2-65 (187)
46 PRK04123 ribulokinase; Provisi 65.1 26 0.00055 38.6 8.5 20 69-88 3-22 (548)
47 COG1924 Activator of 2-hydroxy 64.4 48 0.001 35.1 9.7 112 67-230 133-244 (396)
48 PRK15027 xylulokinase; Provisi 64.4 21 0.00046 38.6 7.6 62 71-136 2-63 (484)
49 CHL00094 dnaK heat shock prote 64.3 1.2E+02 0.0027 34.0 13.9 92 118-232 112-204 (621)
50 TIGR01175 pilM type IV pilus a 63.7 1.8E+02 0.0038 29.7 14.8 59 70-132 4-64 (348)
51 PTZ00281 actin; Provisional 63.5 60 0.0013 34.0 10.6 19 215-233 149-167 (376)
52 TIGR01991 HscA Fe-S protein as 62.6 42 0.00091 37.6 9.7 93 117-232 105-198 (599)
53 PF00012 HSP70: Hsp70 protein; 61.9 22 0.00047 39.3 7.3 93 118-232 112-205 (602)
54 PRK05183 hscA chaperone protei 61.3 45 0.00097 37.6 9.6 93 117-232 125-218 (616)
55 PRK00290 dnaK molecular chaper 61.0 45 0.00097 37.5 9.6 93 117-232 109-202 (627)
56 PTZ00004 actin-2; Provisional 60.9 66 0.0014 33.7 10.4 20 215-234 149-168 (378)
57 PF00022 Actin: Actin; InterP 60.2 64 0.0014 33.5 10.1 86 124-234 75-161 (393)
58 PLN03184 chloroplast Hsp70; Pr 60.0 1.6E+02 0.0034 33.7 13.7 93 117-232 148-241 (673)
59 TIGR01311 glycerol_kin glycero 58.1 32 0.00069 37.3 7.6 61 70-135 2-63 (493)
60 TIGR02350 prok_dnaK chaperone 57.4 61 0.0013 36.1 9.8 94 117-232 106-200 (595)
61 TIGR01234 L-ribulokinase L-rib 57.2 34 0.00073 37.6 7.7 19 70-88 2-20 (536)
62 PTZ00400 DnaK-type molecular c 57.1 58 0.0013 37.0 9.7 93 117-232 150-243 (663)
63 TIGR01314 gntK_FGGY gluconate 55.9 29 0.00063 37.8 6.8 62 70-135 1-62 (505)
64 PTZ00288 glucokinase 1; Provis 51.9 72 0.0016 34.1 8.8 62 67-137 24-86 (405)
65 PTZ00452 actin; Provisional 51.4 1.2E+02 0.0026 31.9 10.3 20 215-234 148-167 (375)
66 PTZ00186 heat shock 70 kDa pre 51.4 91 0.002 35.5 10.0 93 117-232 136-229 (657)
67 PRK00047 glpK glycerol kinase; 49.7 43 0.00093 36.4 6.9 61 69-134 5-66 (498)
68 PTZ00009 heat shock 70 kDa pro 49.4 1.2E+02 0.0025 34.5 10.5 95 117-232 116-211 (653)
69 PRK11678 putative chaperone; P 49.2 76 0.0017 34.3 8.6 122 122-278 131-256 (450)
70 TIGR01315 5C_CHO_kinase FGGY-f 46.0 51 0.0011 36.3 6.9 59 71-134 2-61 (541)
71 TIGR02627 rhamnulo_kin rhamnul 45.9 51 0.0011 35.3 6.7 58 72-134 1-63 (454)
72 COG1069 AraB Ribulose kinase [ 44.4 62 0.0013 35.8 6.9 64 68-134 2-65 (544)
73 PF08841 DDR: Diol dehydratase 43.6 51 0.0011 33.7 5.7 81 163-274 98-181 (332)
74 PF13941 MutL: MutL protein 41.5 70 0.0015 34.8 6.8 74 72-156 3-79 (457)
75 PRK09213 pur operon repressor; 41.2 40 0.00086 34.1 4.6 65 111-175 26-93 (271)
76 PF14574 DUF4445: Domain of un 41.1 37 0.00081 36.4 4.6 22 69-90 1-22 (412)
77 COG4819 EutA Ethanolamine util 34.6 2.6E+02 0.0056 29.5 9.2 142 71-234 7-164 (473)
78 COG4820 EutJ Ethanolamine util 32.8 80 0.0017 30.8 5.0 30 200-235 131-160 (277)
79 TIGR01743 purR_Bsub pur operon 29.3 72 0.0016 32.2 4.3 65 111-175 24-91 (268)
80 TIGR01312 XylB D-xylulose kina 26.4 1.7E+02 0.0036 31.4 6.8 59 72-135 1-60 (481)
81 COG3894 Uncharacterized metal- 25.2 62 0.0014 35.5 3.1 26 66-91 161-186 (614)
82 COG3734 DgoK 2-keto-3-deoxy-ga 25.0 3.1E+02 0.0067 28.2 7.8 98 70-192 6-112 (306)
83 COG1077 MreB Actin-like ATPase 24.9 45 0.00097 34.6 1.9 58 160-234 115-172 (342)
84 TIGR02259 benz_CoA_red_A benzo 22.3 66 0.0014 34.5 2.6 21 68-88 1-21 (432)
85 COG0443 DnaK Molecular chapero 22.0 5.4E+02 0.012 28.9 9.8 93 117-232 96-189 (579)
86 PRK03011 butyrate kinase; Prov 20.3 1.3E+02 0.0029 31.5 4.4 18 70-87 3-20 (358)
No 1
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.7e-95 Score=734.21 Aligned_cols=437 Identities=44% Similarity=0.715 Sum_probs=383.7
Q ss_pred CCCCCCCCCchhhhHHhhhceeeeehhhHHHHHHHHHHcCCCCCCccccccccc-ccccCCCCCCCceEEEEEEcCCCcc
Q 048388 3 KRPHNRQHDSFSDKIQRYRSVLLVISIPVMLIAVVLLLMPGRAAPSDVAMDYGL-SRKFSPNLKLSKSYAVIFDAGSSGS 81 (477)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~y~vvIDaGSsgs 81 (477)
+|...|| ++.+++.++.||+.+.+++|++. ++++|+-..-+...+..+.. .+...+....+.+|+||||||||||
T Consensus 4 ~r~i~~~-~~~~~~~~~~~gl~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~~Y~iiiDAGSTGs 79 (453)
T KOG1385|consen 4 KRKISRH-ESSAGKGFRARGLVVSISIPIVS---VVLTRTQTWFSGSVAAPPLSLSPLGSPNSSIKRQYAIIIDAGSTGT 79 (453)
T ss_pred ccccccc-ccccCCCcccceEEEEEEeeece---eeeecccceeeccccCcccccCccCCCCCCCceEEEEEEecCCCcc
Confidence 4455688 99999999999999999888775 33333332111111222223 5655666557889999999999999
Q ss_pred EEEEEEEeCCCCceecccccceEEeecCCccccCCChHHHHHHHHHHHHHHHhhCCCCCCCCccEEEEeehhhhcCChhh
Q 048388 82 RVHVYCFDQNLDLVPIGKDLELFVQTKPGLSAYASDPQAAANSLASLLDKAQSVVPQDLRPKTPVKVGATAGLRQLGVDA 161 (477)
Q Consensus 82 Rl~Vy~~~~~~~l~~i~~~~e~~~k~~pGLs~~~~~~~~~~~~l~~ll~~a~~~vp~~~~~~tpi~l~ATAGmR~l~~~~ 161 (477)
|||||+|+++.+..+...+.|.|..++||||+|+++|++++++|++||+.|+..||.+.|++|||.+.||||+|+||...
T Consensus 80 RvHvY~F~~~~~~~~p~le~E~F~~~kPGLSsfaddp~~aA~Sl~~LLd~A~~~vP~~~~~kTPi~lkATAGLRlL~~~k 159 (453)
T KOG1385|consen 80 RVHVYKFDQCLPGMPPELEHELFKEVKPGLSSFADDPEEAANSLRPLLDVAEAFVPREHWKKTPIVLKATAGLRLLPGSK 159 (453)
T ss_pred eEEEEEeccCCCCCCchhHHHHHhhcCCcccccCCChHHHHHhHHHHHHHHHhhCCHhHhccCceEEEeecccccCChhH
Confidence 99999999885555555567899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCcccCCCceEEccCCccchhhHHHHHHhhccCCCCCCceEEEEecCCCceeeEEeeccccccCC
Q 048388 162 SDRILQAVRDLLKYKSAFKSKPEWVTVLDGSQEGSYQWVTINYLLGNLGKKYSNTVGVVDLGGGSVQMAYAISEKDAANA 241 (477)
Q Consensus 162 ~~~il~~vr~~l~~~~~f~~~~~~v~IIsG~eEg~y~WvavNyllg~l~~~~~~t~gviDlGGgStQiaf~~~~~~~~~~ 241 (477)
++.||++||+.|+++++|.+.++.|.||+|.|||+|+|+|+|||+|+|+.+..+|+|++|||||||||+|.++..+...+
T Consensus 160 a~~IL~aVre~l~~~s~f~v~~d~VsIm~GtdEGv~aWiTiN~Llg~L~~~~~~tvgv~DLGGGSTQi~f~p~~e~~~~~ 239 (453)
T KOG1385|consen 160 ADNILQAVRELLKNDSPFPVVEDAVSIMDGTDEGVYAWITINYLLGTLGAPGHRTVGVVDLGGGSTQITFLPTFEDTLEA 239 (453)
T ss_pred HHHHHHHHHHHHhccCCccccCCceeeccCcccceeeeeehhhhhcccCCCCCCceEEEEcCCceEEEEEecCccccccc
Confidence 99999999999998899999999999999999999999999999999998878999999999999999999988766555
Q ss_pred CCCCCCCCceeEEEEECCeEEEEEEeeeccccHHHHHHHHHhhcCCC------CCCccCCcccceeeeCCceeeccCCC-
Q 048388 242 PTVPEGEDQYVNEMYLMGTKYYLYVHSYLHYGLLAARTEILKVTKDS------DNPCILAGYDGSYKYGGEEYKASASP- 314 (477)
Q Consensus 242 p~~~~~~~~~~~~~~l~g~~y~lY~hSyLgyG~~aar~~ilk~~~~~------~~PC~~~G~~~~~~~~g~~~~~~~~~- 314 (477)
|+ .|.+.+.++|++|.||+|||||||+.+||.+|+++.++. .+||++.||.+.|+|+++.|++.+.+
T Consensus 240 ~~------~y~~~l~~~~~ky~LythSyLg~GL~aAR~~il~~~e~~~~~h~l~spCl~~~~~~~~~~~~~~y~v~~~~s 313 (453)
T KOG1385|consen 240 PV------PYKRELDFFGRKYKLYTHSYLGLGLKAARLAILKVLENEETTHQLISPCLPPGYAGEWEYGGVTYKVSGSQS 313 (453)
T ss_pred CC------cceeeeeecCceEEEEEecccchHHHHHHHhhhhhhccccccceeeccccCcchhhheeecceEEEecCccC
Confidence 54 499999999999999999999999999999999954443 35999999999999999999987743
Q ss_pred CCCCHHhHHHHHHHhhhccCCCCCcccCCCCccCCCCCCCCCcceEeeehhhhhhhcCccCCCCCCcccChHHHHHHHHH
Q 048388 315 SGSNIEECQSVAIKALKVNDTCTHMQCTFGGVWNGGGGDGQKNMFVASFFFDRAAEAGFIDQNEPVAKVRPGDFESAAKR 394 (477)
Q Consensus 315 ~~g~~~~C~~~i~~~L~~~~~C~~~~csf~gv~~~~~~~~~~~~y~~S~f~~~~~~~g~~~~~~~~~~~~~~~~~~aa~~ 394 (477)
+...++.|+..+.++|.. .|.+.||+|+ ++++|++|+||||+.++|+++++ +++...+.||..+|++
T Consensus 314 ~~~~~E~c~~~~~~~l~~--~~~~~p~~~~----------~~~~y~fSYfyDRa~~~G~vd~~-~~~~~~v~df~~ka~~ 380 (453)
T KOG1385|consen 314 GASLFEQCRGTIDAVLEG--SCVHRPCEFK----------QSDVYLFSYFYDRAAEVGLVDPF-KGGMLEVADFEKKAEE 380 (453)
T ss_pred ccccchhhHHHHHHHHhc--CccccccccC----------CCcEEEEehhhhhhhhcCCccCC-ccccchHHHHHHHHHH
Confidence 346789999999998854 6999999995 67899999999999999999987 7889999999999999
Q ss_pred HccCChhhhhhhCCCCCCCCcccccccHHHHHHHhhcccCCCCCCceeEeeeeccCCCcccccccHHHHHHHhcccc
Q 048388 395 ACQTKLEDAKSIYPRVDESNLPYICMDLVYQHALLVVGFGLDPWQEITLVKQIKYQNSLVEAAWPLGSAIEAISSLG 471 (477)
Q Consensus 395 ~C~~~~~~~~~~~p~~~~~~l~~~Cfd~~Y~~~LL~dGfgl~~~~~I~~~~kI~~~~~~~e~~W~LGaal~~~s~~~ 471 (477)
+|+.- .++|..+++++|+.|||++||++||++||||++.|.|+++|||+ ++|++|+||++++.+++..
T Consensus 381 ~c~~~-----~t~~~~e~~~~P~~ClDL~Y~~sLL~~Gfgi~dsk~l~l~KKi~----~~Ei~W~LGaa~~~l~s~n 448 (453)
T KOG1385|consen 381 ACRSL-----ETFPLDELSNLPFLCLDLTYIISLLKDGFGIEDSKVLHLAKKID----NIEISWALGAAFELLKSDN 448 (453)
T ss_pred HHHhh-----hccCccccccCcHHHHHHHHHHHHHHhhcCCCCCceeEeeeecC----ceEeehhcccchhhhhccc
Confidence 99875 56788777889999999999999999999999999999999999 4999999999999998865
No 2
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.1e-88 Score=700.06 Aligned_cols=378 Identities=30% Similarity=0.566 Sum_probs=329.8
Q ss_pred CceEEEEEEcCCCccEEEEEEEeCCCC--ceecccccceEEeecCCccccCCChHHHHHHHHHHHHHHHhhCCCCCCCCc
Q 048388 67 SKSYAVIFDAGSSGSRVHVYCFDQNLD--LVPIGKDLELFVQTKPGLSAYASDPQAAANSLASLLDKAQSVVPQDLRPKT 144 (477)
Q Consensus 67 ~~~y~vvIDaGSsgsRl~Vy~~~~~~~--l~~i~~~~e~~~k~~pGLs~~~~~~~~~~~~l~~ll~~a~~~vp~~~~~~t 144 (477)
..+|+|||||||||||||||+|+...+ +..+........|++||||+|+++|+++..+|.+||++|+++||++.|+.|
T Consensus 7 ~~kYgiviDaGSSgTrl~Vy~w~~~~g~~~~~i~~~~~~~~k~~PGiSsfa~nP~~a~~~l~pLlefA~~~IPk~~h~~T 86 (501)
T KOG1386|consen 7 NLKYGIVIDAGSSGTRLFVYKWPAESGNPLTGIVGQIYDCLKLGPGISSFADNPEGASVYLTPLLEFAKEHIPKEKHKET 86 (501)
T ss_pred cceEEEEEecCCCCceEEEEeecccCCCcccCccchhhcccccCCChhhhccChhhhHHHHHHHHHHHHhhCCHhhcCCC
Confidence 678999999999999999999986422 344444445668999999999999999999999999999999999999999
Q ss_pred cEEEEeehhhhcCChhhHHHHHHHHHHHhhccCCcccCCCceEEccCCccchhhHHHHHHhhccCCCC-----CCceEEE
Q 048388 145 PVKVGATAGLRQLGVDASDRILQAVRDLLKYKSAFKSKPEWVTVLDGSQEGSYQWVTINYLLGNLGKK-----YSNTVGV 219 (477)
Q Consensus 145 pi~l~ATAGmR~l~~~~~~~il~~vr~~l~~~~~f~~~~~~v~IIsG~eEg~y~WvavNyllg~l~~~-----~~~t~gv 219 (477)
||+++||||||+||.+++++||+.+++.++..++|.|+++|++||||+|||+|+|+|+||++|+|++. ...|+|+
T Consensus 87 pl~l~ATAGMRLL~~~~qeaIl~~l~~~l~~~s~f~f~~~~a~IIsG~~EGvYgWi~~NY~LG~f~~~~~~~~~~~T~G~ 166 (501)
T KOG1386|consen 87 PLFLGATAGMRLLPLAQQEAILEVLRRVLKSLSDFLFDDEWARIISGKEEGVYGWIAANYLLGRFGKKNRWDSRKETFGA 166 (501)
T ss_pred CeEEEecccceecCcccHHHHHHHHHHhcccccCCcccccccEEeecccceehhhHHHHHHHHhccccCcccCCcceeee
Confidence 99999999999999999999999999999977999999999999999999999999999999999872 5689999
Q ss_pred EecCCCceeeEEeeccccccCCCCCCCCCCceeEEEEEC---CeEEEEEEeeeccccHHHHHHHHH----h-hcC-----
Q 048388 220 VDLGGGSVQMAYAISEKDAANAPTVPEGEDQYVNEMYLM---GTKYYLYVHSYLHYGLLAARTEIL----K-VTK----- 286 (477)
Q Consensus 220 iDlGGgStQiaf~~~~~~~~~~p~~~~~~~~~~~~~~l~---g~~y~lY~hSyLgyG~~aar~~il----k-~~~----- 286 (477)
||||||||||+|++++..... |. +.+..++++ ..+|+||+|||||||.|+|+++++ + ..+
T Consensus 167 lDlGGAS~QItFe~~~~~e~~-~~------~~~~~i~~G~~~~~~Y~ly~~SfLgyG~N~A~~ry~~~Ll~~~~n~n~~~ 239 (501)
T KOG1386|consen 167 LDLGGASTQITFEPPNQQEEV-PK------ENLQTINYGNDNLVKYRLYVHSFLGYGANEALDRYLAMLLEKLPNKNGLT 239 (501)
T ss_pred EecCCceeEEEEecCcccccc-ch------hhhhheecCCCCceEEEEEEEeecccchhHHHHHHHHHHHHhcccccccc
Confidence 999999999999988533222 11 456677777 277999999999999999998854 3 111
Q ss_pred ------CCCCCccCCcccceeeeC-------------CceeeccCCCCCCCHHhHHHHHHHhhhccCCCCCcccCCCCcc
Q 048388 287 ------DSDNPCILAGYDGSYKYG-------------GEEYKASASPSGSNIEECQSVAIKALKVNDTCTHMQCTFGGVW 347 (477)
Q Consensus 287 ------~~~~PC~~~G~~~~~~~~-------------g~~~~~~~~~~~g~~~~C~~~i~~~L~~~~~C~~~~csf~gv~ 347 (477)
...|||+|+||..+++.. ++.+... |+|||++|++.+.++|+. .+|...+|+|+|++
T Consensus 240 ~~~~~~~~~DPC~p~Gy~~~~~~~~~~~~~~~e~~~~~~~~~~~---GtGn~~~C~~~v~~ll~~-~~C~~~~Csf~gv~ 315 (501)
T KOG1386|consen 240 GLTGDNPLTDPCLPRGYNYDVNLSDVYSSPCPEESKNGQSIELQ---GTGNWSQCRSAVLPLLNF-KSCPYQPCSFNGVF 315 (501)
T ss_pred ccccCcccCCCCCCCCcceeeeeccccccccccccCCCceEEEe---cCCCHHHHHHHHHHhcCC-CCCCCcccccCCEe
Confidence 135999999999988763 4455444 489999999999999975 68999999999999
Q ss_pred CCCCCCCCCcceEeeehhhhhhhc-CccCCCCCCcccChHHHHHHHHHHccCChhhhhhh-CCCCCCCCcccccccHHHH
Q 048388 348 NGGGGDGQKNMFVASFFFDRAAEA-GFIDQNEPVAKVRPGDFESAAKRACQTKLEDAKSI-YPRVDESNLPYICMDLVYQ 425 (477)
Q Consensus 348 ~~~~~~~~~~~y~~S~f~~~~~~~-g~~~~~~~~~~~~~~~~~~aa~~~C~~~~~~~~~~-~p~~~~~~l~~~Cfd~~Y~ 425 (477)
+|++ +.+||++|+|||++.++ ++ ++++.+++|.++++++|.++|++++.. ||..+|+++.++||.++||
T Consensus 316 ~P~i---~f~f~~fSef~y~t~~~f~l------gg~y~~~~f~~~~~~fC~~~Ws~l~~~~y~~~dE~~L~~yCFkaawi 386 (501)
T KOG1386|consen 316 QPPI---QFEFYGFSEFFYTTNDVFGL------GGKYSLDKFTKAGREFCGKEWSTLRTRKYPSADEEYLKTYCFKAAWI 386 (501)
T ss_pred CCCc---CceeEEEEeeeeehhhhhcc------cceecHHHHHHHHHHHhhchHHHHHhccCCCCCHHHHHHHhhhHHHH
Confidence 9975 33899999999988764 43 367999999999999999999999997 9999999999999999999
Q ss_pred HHHhhcccCCCCC--CceeEeeeeccCCCcccccccHHHHHHHhc
Q 048388 426 HALLVVGFGLDPW--QEITLVKQIKYQNSLVEAAWPLGSAIEAIS 468 (477)
Q Consensus 426 ~~LL~dGfgl~~~--~~I~~~~kI~~~~~~~e~~W~LGaal~~~s 468 (477)
++|||+||+|+.+ ..|+++++|. +.|++||||++|.+++
T Consensus 387 ~slLh~Gf~~~~~~~~~i~~~~kv~----~~el~WtLG~~lY~~~ 427 (501)
T KOG1386|consen 387 LSLLHEGFGFPKDQWESIQFASKVA----GSELQWTLGAILYMAS 427 (501)
T ss_pred HHHHhcccCCCcccccccchhhhhc----CcccchhhhhHHHHhh
Confidence 9999999999855 6899999998 5799999999988874
No 3
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=100.00 E-value=4.9e-90 Score=728.85 Aligned_cols=398 Identities=39% Similarity=0.667 Sum_probs=329.8
Q ss_pred CCceEEEEEEcCCCccEEEEEEEeCC-CCceecccc----cceEEeecCCccccCCChHHHHHHHHHHHHHHHhhCCCCC
Q 048388 66 LSKSYAVIFDAGSSGSRVHVYCFDQN-LDLVPIGKD----LELFVQTKPGLSAYASDPQAAANSLASLLDKAQSVVPQDL 140 (477)
Q Consensus 66 ~~~~y~vvIDaGSsgsRl~Vy~~~~~-~~l~~i~~~----~e~~~k~~pGLs~~~~~~~~~~~~l~~ll~~a~~~vp~~~ 140 (477)
++.+|+|||||||||||+|||+|... .....+... .+++.+++||||+|+++|++++++|.+||++|+++||.+.
T Consensus 5 ~~~~y~vviDAGSsgsR~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~pgls~~~~~~~~~~~~l~~ll~~a~~~ip~~~ 84 (434)
T PF01150_consen 5 ESRKYGVVIDAGSSGSRVHVYKWRCRDNNSLPVVPLVEQSKPVFKKVEPGLSSFADNPEKAAESLQPLLDFAKSVIPKSQ 84 (434)
T ss_dssp EEEEEEEEEEEESSEEEEEEEEEEEEECCGCEEEEEEEEBEEHCCHHCCHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccEEEEEEcCCCCceEEEEEEecCCCccCCccccceeccchhhcccchHHHhCCChHHHHHHHHHHHHHHHhhCCHHH
Confidence 46789999999999999999999752 222222211 2347789999999999999999999999999999999999
Q ss_pred CCCccEEEEeehhhhcCChhhHHHHHHHHHHHhhccCCcccCCCceEEccCCccchhhHHHHHHhhccCCCC-----CCc
Q 048388 141 RPKTPVKVGATAGLRQLGVDASDRILQAVRDLLKYKSAFKSKPEWVTVLDGSQEGSYQWVTINYLLGNLGKK-----YSN 215 (477)
Q Consensus 141 ~~~tpi~l~ATAGmR~l~~~~~~~il~~vr~~l~~~~~f~~~~~~v~IIsG~eEg~y~WvavNyllg~l~~~-----~~~ 215 (477)
++.|||+|.||||||+||.++++.||++|++.+++.++|.|.+++||||||+|||+|+|+||||++|+|... ..+
T Consensus 85 ~~~tpi~l~ATAGmRlL~~~~~~~il~~~~~~l~~~~~f~~~~~~v~visG~eEg~y~WvtvNyl~g~l~~~~~~~~~~~ 164 (434)
T PF01150_consen 85 HSSTPIYLGATAGMRLLPEEQQEAILDEVRNYLRSSSPFPFRDSWVRVISGEEEGIYGWVTVNYLLGRLDSSGASKSPSN 164 (434)
T ss_dssp SCHEEEEEEE-HHHHTHHHHHHHHHHHHHHHCHHCHCTSSEEETTCEE--HHHHHHHHHHHHHHHTTTSSSSTEEEEESS
T ss_pred hCCeeEEEecccccEECChhhHHHHHHHHHHhhccCCCCccCccceEecCHHHhhHhHHHHHHHHhCccccccccCCCCc
Confidence 999999999999999999999999999999999866899999999999999999999999999999999876 568
Q ss_pred eEEEEecCCCceeeEEeeccccccCCCCCCCCCCceeEEEEECCeEEEEEEeeeccccHHHHHHHHHh--hcC-------
Q 048388 216 TVGVVDLGGGSVQMAYAISEKDAANAPTVPEGEDQYVNEMYLMGTKYYLYVHSYLHYGLLAARTEILK--VTK------- 286 (477)
Q Consensus 216 t~gviDlGGgStQiaf~~~~~~~~~~p~~~~~~~~~~~~~~l~g~~y~lY~hSyLgyG~~aar~~ilk--~~~------- 286 (477)
|+|+||||||||||||.+++... ..+...+.+ .++..+++.+++|+||+|||||||+++||.++++ +..
T Consensus 165 t~g~lDlGGaStQIaf~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~vys~SyLgyG~~~Ar~~~l~~l~~~~~~~~~~ 242 (434)
T PF01150_consen 165 TVGALDLGGASTQIAFEPSEGTF-SNSSLEDIN-SYIRRLKLGGKNYDVYSHSYLGYGLNEARKRYLASLVSNSSKKSSG 242 (434)
T ss_dssp -EEEEEE-SSEEEEEEEETTTTT-SCTTSSGCE--GCCCCCCTTCCCEEEEEEEETCSHHHHHHHHHHHHTTSTTTEETC
T ss_pred eEEEEecCCcceeeeeccCcccc-ccccccccc-chheeeccccceeEEEEeecccccHHHHHHHHHHHHhhhccccccc
Confidence 99999999999999999983222 112222221 3577889999999999999999999999999886 221
Q ss_pred CCCCCccCCcccceeeeCCceeeccCCCCCCCHHhHHHHHHHhhhccCCCCCcccCCCCccCCCCCCCCCcceEeeehhh
Q 048388 287 DSDNPCILAGYDGSYKYGGEEYKASASPSGSNIEECQSVAIKALKVNDTCTHMQCTFGGVWNGGGGDGQKNMFVASFFFD 366 (477)
Q Consensus 287 ~~~~PC~~~G~~~~~~~~g~~~~~~~~~~~g~~~~C~~~i~~~L~~~~~C~~~~csf~gv~~~~~~~~~~~~y~~S~f~~ 366 (477)
...|||+|+||...+++.+..+......|+|||++|++.++++|+.+..|...+|+|+|+++|+.......|+++|+||+
T Consensus 243 ~i~~PC~p~G~~~~~~~~~~~~~~~~~~Gtg~~~~C~~~i~~~l~~~~~c~~~~C~~~~v~~p~~~~~~~~f~a~s~fy~ 322 (434)
T PF01150_consen 243 VIPNPCLPKGYNQSWTYSDVEYDVITLTGTGDFEKCRELIRKLLNKNANCEYSPCSFNGVYQPSIPSGNGFFYAFSYFYY 322 (434)
T ss_dssp EEEETTS-BT-EEESCSCHEESSCCEBTTHHHHHHCCTTSHHHHT--SHHHHHHHHTTTTBTTSHHHHHHSETTEEEEEE
T ss_pred ccCCccccCCccceEEecccccccccCCCCCchHHHHHHHHHHhhccccCCCCCCccCCccCCcccccccceeEEEEEEE
Confidence 23699999999998887765433333456899999999999999877789999999999999975455678999999999
Q ss_pred hhhhcCccCCCCCCcccChHHHHHHHHHHccCChhhhhhhCCCCCCCCcc----cccccHHHHHHHhhcccCCCCC-Cce
Q 048388 367 RAAEAGFIDQNEPVAKVRPGDFESAAKRACQTKLEDAKSIYPRVDESNLP----YICMDLVYQHALLVVGFGLDPW-QEI 441 (477)
Q Consensus 367 ~~~~~g~~~~~~~~~~~~~~~~~~aa~~~C~~~~~~~~~~~p~~~~~~l~----~~Cfd~~Y~~~LL~dGfgl~~~-~~I 441 (477)
++..+|+.+.. .++++.+|.++|+++|+++|+++++.++.......+ ++||+++|+|+||++||||+++ ++|
T Consensus 323 ~~~~l~l~~~~---~~~~l~~~~~aa~~~Cs~~w~~i~~~~~~~~~~~~~~~l~~~Cf~~~yi~sLL~~Gyg~~~~~~~i 399 (434)
T PF01150_consen 323 TADFLGLVSPS---DTYTLSDFKSAAKEFCSKSWSEIKAEFPGNKYKYLPDELPYYCFDAAYIYSLLHDGYGFDDDSQEI 399 (434)
T ss_dssp HHHHHHHHHHH---HTSSSSHHHHHHHHHHTSSHHHHHHHSCCSSHEEEESHHHHHHHHHHHHCCCCHTTS--THHHHHC
T ss_pred eehhcCcCCcc---ccccchHHHHHHHHHHcchHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhcccCCCCCCceE
Confidence 99988887531 146899999999999999999999998876544444 8999999999999999999998 999
Q ss_pred eEeeeeccCCCcccccccHHHHHHHhccccc
Q 048388 442 TLVKQIKYQNSLVEAAWPLGSAIEAISSLGL 472 (477)
Q Consensus 442 ~~~~kI~~~~~~~e~~W~LGaal~~~s~~~~ 472 (477)
+++++|+ +.|++||||+||+.++..+.
T Consensus 400 ~~~~kI~----~~ev~WtLGa~l~~~~~~~~ 426 (434)
T PF01150_consen 400 TFVKKIN----GQEVSWTLGAALYLINALPE 426 (434)
T ss_dssp CCHHHHH----TEEEECHHHCCCCHTTTSEE
T ss_pred EeeeeeC----CcccCcHHHHHHHHhhccch
Confidence 9999999 47999999999999998876
No 4
>COG5371 Golgi nucleoside diphosphatase [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-38 Score=321.74 Aligned_cols=388 Identities=25% Similarity=0.277 Sum_probs=301.2
Q ss_pred ceEEEEEEcCCCccEEEEEEEeCCCCceecccccceEEeecCCccccCCChHHHHHHHHHHHHHHHhhCCCCCCCCccEE
Q 048388 68 KSYAVIFDAGSSGSRVHVYCFDQNLDLVPIGKDLELFVQTKPGLSAYASDPQAAANSLASLLDKAQSVVPQDLRPKTPVK 147 (477)
Q Consensus 68 ~~y~vvIDaGSsgsRl~Vy~~~~~~~l~~i~~~~e~~~k~~pGLs~~~~~~~~~~~~l~~ll~~a~~~vp~~~~~~tpi~ 147 (477)
.+|..+|||||+|+|+|||+|..... .+.. ..+.+..+.||+++|..++.++++++.++++.|.+.+|.+.++.+|+.
T Consensus 119 ~qYv~~idagstgsr~~iyqfidge~-~~~~-~~~~~n~L~~~l~d~d~~t~G~~~s~~~l~qiA~~~~p~e~~r~~pi~ 196 (549)
T COG5371 119 CQYVKMIDAGSTGSRSNIYQFIDGEI-EGQY-LWLNTNYLEPGLSDFDTDTVGFADSGGALLQIAFEFVPSEIRRCMPII 196 (549)
T ss_pred hheecccccCCCccceeEEEeecCcc-Ccch-hhhhhhhhcccccccccccHHHHhhccHHHHhhhccCCHHHhhcCcce
Confidence 58999999999999999999986421 1111 123677899999999999999999999999999999999999999999
Q ss_pred EEeehhhhcCChhhHHHHHHHHHHHhhccCCccc-CCCceEEccCCccchhhHHHHHHhhccCCCC--CCceEEEEecCC
Q 048388 148 VGATAGLRQLGVDASDRILQAVRDLLKYKSAFKS-KPEWVTVLDGSQEGSYQWVTINYLLGNLGKK--YSNTVGVVDLGG 224 (477)
Q Consensus 148 l~ATAGmR~l~~~~~~~il~~vr~~l~~~~~f~~-~~~~v~IIsG~eEg~y~WvavNyllg~l~~~--~~~t~gviDlGG 224 (477)
+.||||+|+++...+..|+..+|.-|+..++|.. ..+.|+||.|.+||.|.|...||++++.+.. ...|.+++|+||
T Consensus 197 ~~~taGlrl~Gds~s~~vl~s~r~~l~~n~~f~~y~g~~ieil~G~~Eg~~a~~~m~~~ls~~g~~~~~~~T~~v~d~gg 276 (549)
T COG5371 197 VTATAGLRLLGDSRSDHVLVSTRLGLGANYAFRRYLGDLIEILNGVDEGNLADPCMNRGLSNDGTDAGTHGTGAVVDCGG 276 (549)
T ss_pred EEEEeeeeecCccchhhHHHHHHHhhccccccceecccceeeccCccccchhhhhhhhhhccccCCCcccCcccceeccC
Confidence 9999999999999999999999999998888864 4589999999999999999999999998643 256889999999
Q ss_pred CceeeEEeeccccccCCCCCCCCCCceeEEEEECCeEEEEEEeeeccccHHHHHHHHH--------h-h-----cCC---
Q 048388 225 GSVQMAYAISEKDAANAPTVPEGEDQYVNEMYLMGTKYYLYVHSYLHYGLLAARTEIL--------K-V-----TKD--- 287 (477)
Q Consensus 225 gStQiaf~~~~~~~~~~p~~~~~~~~~~~~~~l~g~~y~lY~hSyLgyG~~aar~~il--------k-~-----~~~--- 287 (477)
|||||.+....-+. -|..-+|...+ .+...+.+|.+|.+|-++||++.+|..+- | + .+-
T Consensus 277 ~stqll~~~r~~~~--~~~~~DG~h~~--~ldf~~e~~k~~g~Se~~Y~andv~~~~~~~~~~nflKsv~el~g~s~t~~ 352 (549)
T COG5371 277 GSTQLLLKPRPCSD--IPCLFDGGHKP--LLDFANEEYKFYGDSELWYTANDVFKKGGSVAFRNFLKSVDELCGDSWTQI 352 (549)
T ss_pred cceeeeecCCCCcc--ccccccCcccc--ccccCCccceEEeehhhhhhHHHHHhhccceechhHHHHHHHHhcccchhh
Confidence 99999998654221 13334454333 45667788999999999999999987543 2 1 111
Q ss_pred CCCCccCCcccceee---eCC-ceeec--cCCCCCCCHHhHHHHHHHhhhccCCCCCcccCCCCccCCCC--CCCCC-cc
Q 048388 288 SDNPCILAGYDGSYK---YGG-EEYKA--SASPSGSNIEECQSVAIKALKVNDTCTHMQCTFGGVWNGGG--GDGQK-NM 358 (477)
Q Consensus 288 ~~~PC~~~G~~~~~~---~~g-~~~~~--~~~~~~g~~~~C~~~i~~~L~~~~~C~~~~csf~gv~~~~~--~~~~~-~~ 358 (477)
..+||++..-..+.+ ... ..+++ .|..-----.+|+.+....|.++..|...+|+|+||.|+.. ..++. +.
T Consensus 353 l~~~~l~~~i~~~~k~s~~eak~~l~il~~G~d~p~~s~qcr~l~~~~L~kd~~c~spf~S~~gVeq~k~s~Tl~~~l~~ 432 (549)
T COG5371 353 LSHKELGPSIRENLKDSCFEAKWVLNILHEGFDNPLESHQCRNLADLILSKDPACHSPFCSFEGVEQTKLSWTLGTSLDI 432 (549)
T ss_pred hcCcccCcccchhhhhhhhhhhhheeeeeeccCCcccchhhhhhhhhhhccccccCCCccccccccccceeeeccccCcc
Confidence 459999876665421 111 11222 22111111468999999999888889999999999999864 23344 88
Q ss_pred eEeeehhhhhhhcCccCCCCCCcccChHHHHHHHHHHccCC--hhhhhhhCCCCCC-CCcccccccHHHHHHHhhcccCC
Q 048388 359 FVASFFFDRAAEAGFIDQNEPVAKVRPGDFESAAKRACQTK--LEDAKSIYPRVDE-SNLPYICMDLVYQHALLVVGFGL 435 (477)
Q Consensus 359 y~~S~f~~~~~~~g~~~~~~~~~~~~~~~~~~aa~~~C~~~--~~~~~~~~p~~~~-~~l~~~Cfd~~Y~~~LL~dGfgl 435 (477)
|.+|+||++...+|.- ...+|..+|.-.|.-+|.-. |..+=.-++..++ +..+..|+|..|+.+||+.||.+
T Consensus 433 y~isy~~~rgk~L~~p-----~~sft~k~~~~la~i~C~~~~~~~~~Fsl~~~~ke~k~~~~~~L~~~~~~slls~gYei 507 (549)
T COG5371 433 YNISYAYDRGKLLGSP-----SNSFTNKGFLMLAIIVCIFYLIWRRRFSLYNILKELKRRRLKCLDRSDPFSLLSEGYEI 507 (549)
T ss_pred eeEEEecCCCcccCCc-----ccccchhHHHHHHHHHHhhHHHHHHHhccchHHHHHHhhhHHHhhhccchhhhhccccC
Confidence 9999999987665543 23689999999999999853 4333222222221 23466899999999999999999
Q ss_pred CCCCceeEeeeeccCCCcccccccHHHHHHHhccc
Q 048388 436 DPWQEITLVKQIKYQNSLVEAAWPLGSAIEAISSL 470 (477)
Q Consensus 436 ~~~~~I~~~~kI~~~~~~~e~~W~LGaal~~~s~~ 470 (477)
+.++.+.+.|++. .-|.+|+||+.+.++...
T Consensus 508 ~~~~~~~~~ks~~----nke~g~~l~as~s~l~a~ 538 (549)
T COG5371 508 PSSRMLDLGKSSA----NKEHGPCLGASLSALLAD 538 (549)
T ss_pred chhhhhhhccccc----ccccccccccchhhhccc
Confidence 9999999999998 469999999999888654
No 5
>COG5371 Golgi nucleoside diphosphatase [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-39 Score=328.19 Aligned_cols=375 Identities=24% Similarity=0.398 Sum_probs=293.5
Q ss_pred ceEEEEEEcCCCccEEEEEEEeCCCC-------------ceecccccceEEeecCCccccCCChHHHH-HHHHHHHHHHH
Q 048388 68 KSYAVIFDAGSSGSRVHVYCFDQNLD-------------LVPIGKDLELFVQTKPGLSAYASDPQAAA-NSLASLLDKAQ 133 (477)
Q Consensus 68 ~~y~vvIDaGSsgsRl~Vy~~~~~~~-------------l~~i~~~~e~~~k~~pGLs~~~~~~~~~~-~~l~~ll~~a~ 133 (477)
.+|++||||||+|+|||||.|+.+.+ +.++.+...+..+++||||+|..+|+.+. ..++++|++|+
T Consensus 3 ~~~~~~~d~~~s~~~v~~~~w~~~t~Ss~~~~~~si~~~~~~~~~~~~w~~k~~~~is~~~~k~~~~~~~~lkelLdfa~ 82 (549)
T COG5371 3 PRFGIVIDAGSSGSRVHVFKWDQDTESSLHATPQSILQSVTHIHQEPDWTFKLNPGISSFEKKPQDAEKSHLKELLDFAK 82 (549)
T ss_pred chhhhhhhhhcccceEEEEEeccCcccccCCCCccccccccCcccCCccccccCCcccccCCCccccccccccchhhhhh
Confidence 46899999999999999999975321 11234445588899999999999999886 57999999999
Q ss_pred hhCCCCCCCCccEEEEeehhhhcCChhhHHHHHHHHHHHhhccCCcccCC--CceEEccCCccchhhHHHHHHhhccCCC
Q 048388 134 SVVPQDLRPKTPVKVGATAGLRQLGVDASDRILQAVRDLLKYKSAFKSKP--EWVTVLDGSQEGSYQWVTINYLLGNLGK 211 (477)
Q Consensus 134 ~~vp~~~~~~tpi~l~ATAGmR~l~~~~~~~il~~vr~~l~~~~~f~~~~--~~v~IIsG~eEg~y~WvavNyllg~l~~ 211 (477)
..||+..++.+|+++.||||||+|+.+-|.-++.-++++++....|.... .-+++|+|+-|+.|+|.+.|||.+.|..
T Consensus 83 ~~IP~k~~~~~P~la~atA~~~lls~Dsq~~s~~~~~qYv~~idagstgsr~~iyqfidge~~~~~~~~~~n~L~~~l~d 162 (549)
T COG5371 83 NIIPEKTMPSLPVLAGATAAMRLLSQDSQPCSLIHLCQYVKMIDAGSTGSRSNIYQFIDGEIEGQYLWLNTNYLEPGLSD 162 (549)
T ss_pred ccCchhhccccceeccccccccccCCCCCchhhHhhhheecccccCCCccceeEEEeecCccCcchhhhhhhhhcccccc
Confidence 99999999999999999999999999999999999999887644444332 4679999999999999999999999987
Q ss_pred CCCceEEEEecCCCceeeEEeeccccccC-CCCCCCCCCceeEEEEECC--eEEEEEEeeeccccHHHHHHHHHh----h
Q 048388 212 KYSNTVGVVDLGGGSVQMAYAISEKDAAN-APTVPEGEDQYVNEMYLMG--TKYYLYVHSYLHYGLLAARTEILK----V 284 (477)
Q Consensus 212 ~~~~t~gviDlGGgStQiaf~~~~~~~~~-~p~~~~~~~~~~~~~~l~g--~~y~lY~hSyLgyG~~aar~~ilk----~ 284 (477)
...+|+|+.|+||+++||||+.......+ .|. .-.. ..-+++.| +.++|++..++|+|.|.++.+++- +
T Consensus 163 ~d~~t~G~~~s~~~l~qiA~~~~p~e~~r~~pi---~~~~-taGlrl~Gds~s~~vl~s~r~~l~~n~~f~~y~g~~iei 238 (549)
T COG5371 163 FDTDTVGFADSGGALLQIAFEFVPSEIRRCMPI---IVTA-TAGLRLLGDSRSDHVLVSTRLGLGANYAFRRYLGDLIEI 238 (549)
T ss_pred cccccHHHHhhccHHHHhhhccCCHHHhhcCcc---eEEE-EeeeeecCccchhhHHHHHHHhhccccccceecccceee
Confidence 67789999999999999999866543221 111 1000 01123333 779999999999999999988872 1
Q ss_pred -----cCCCCCCccCCcccceeeeCCceeeccCCCCCCCHHhHHHHHHHhhhccCCCCCcccCCCCccCCCCCCCC--Cc
Q 048388 285 -----TKDSDNPCILAGYDGSYKYGGEEYKASASPSGSNIEECQSVAIKALKVNDTCTHMQCTFGGVWNGGGGDGQ--KN 357 (477)
Q Consensus 285 -----~~~~~~PC~~~G~~~~~~~~g~~~~~~~~~~~g~~~~C~~~i~~~L~~~~~C~~~~csf~gv~~~~~~~~~--~~ 357 (477)
.+....||++.|....-+.. +..++++...|.....+++..+.+|...+|.|+|++.+....+. -+
T Consensus 239 l~G~~Eg~~a~~~m~~~ls~~g~~~-------~~~~T~~v~d~gg~stqll~~~r~~~~~~~~~DG~h~~~ldf~~e~~k 311 (549)
T COG5371 239 LNGVDEGNLADPCMNRGLSNDGTDA-------GTHGTGAVVDCGGGSTQLLLKPRPCSDIPCLFDGGHKPLLDFANEEYK 311 (549)
T ss_pred ccCccccchhhhhhhhhhccccCCC-------cccCcccceeccCcceeeeecCCCCccccccccCccccccccCCccce
Confidence 12236899998865432111 11357899999999999887788999999999999998765444 78
Q ss_pred ceEeeehhhhhhhc-CccCCCCCCcccChHHHHHHHHHHccCChhhhh--h-hCCCCCCCCcccccccHHHHHHHhhccc
Q 048388 358 MFVASFFFDRAAEA-GFIDQNEPVAKVRPGDFESAAKRACQTKLEDAK--S-IYPRVDESNLPYICMDLVYQHALLVVGF 433 (477)
Q Consensus 358 ~y~~S~f~~~~~~~-g~~~~~~~~~~~~~~~~~~aa~~~C~~~~~~~~--~-~~p~~~~~~l~~~Cfd~~Y~~~LL~dGf 433 (477)
||+.|.++|++.++ .++ +.+.+..|.+..+++|..+|..+- . -+|++++. ++..||.+.|.+++|+.||
T Consensus 312 ~~g~Se~~Y~andv~~~~------~~~~~~nflKsv~el~g~s~t~~l~~~~l~~~i~~~-~k~s~~eak~~l~il~~G~ 384 (549)
T COG5371 312 FYGDSELWYTANDVFKKG------GSVAFRNFLKSVDELCGDSWTQILSHKELGPSIREN-LKDSCFEAKWVLNILHEGF 384 (549)
T ss_pred EEeehhhhhhHHHHHhhc------cceechhHHHHHHHHhcccchhhhcCcccCcccchh-hhhhhhhhhhheeeeeecc
Confidence 99999999999886 332 457788899999999999996442 2 25667655 8999999999999999999
Q ss_pred CCCC-C-------C-----------ceeEeeeeccCCCcccccccHHHHH
Q 048388 434 GLDP-W-------Q-----------EITLVKQIKYQNSLVEAAWPLGSAI 464 (477)
Q Consensus 434 gl~~-~-------~-----------~I~~~~kI~~~~~~~e~~W~LGaal 464 (477)
..+. . . .....++|+ ..++.||||..+
T Consensus 385 d~p~~s~qcr~l~~~~L~kd~~c~spf~S~~gVe----q~k~s~Tl~~~l 430 (549)
T COG5371 385 DNPLESHQCRNLADLILSKDPACHSPFCSFEGVE----QTKLSWTLGTSL 430 (549)
T ss_pred CCcccchhhhhhhhhhhccccccCCCcccccccc----ccceeeeccccC
Confidence 8764 1 1 133445666 478999999874
No 6
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=99.76 E-value=6.3e-18 Score=171.15 Aligned_cols=273 Identities=16% Similarity=0.158 Sum_probs=170.8
Q ss_pred EEEEcCCCccEEEEEEEeCCCCceecccccceEEeecCCccccC-CChHHHHHHHHHHHHHHHhhCCCCCCCCccEEEEe
Q 048388 72 VIFDAGSSGSRVHVYCFDQNLDLVPIGKDLELFVQTKPGLSAYA-SDPQAAANSLASLLDKAQSVVPQDLRPKTPVKVGA 150 (477)
Q Consensus 72 vvIDaGSsgsRl~Vy~~~~~~~l~~i~~~~e~~~k~~pGLs~~~-~~~~~~~~~l~~ll~~a~~~vp~~~~~~tpi~l~A 150 (477)
++||+|||+.|+.||++... .+..+.. .....++..|+.... -.++.+.+.+..|.++.+.. +.++.+.++++|
T Consensus 3 AvIDiGSNsirl~I~~~~~~-~~~~l~~-~~~~vrL~~~~~~~g~i~~e~i~~~~~~l~~f~~~~---~~~~v~~i~~va 77 (300)
T TIGR03706 3 AAIDIGSNSVRLVIARGVEG-SLQVLFN-EKEMVRLGEGLDSTGRLSEEAIERALEALKRFAELL---RGFPVDEVRAVA 77 (300)
T ss_pred EEEEecCCeeeEEEEEecCC-cEEEhhh-eeeeeecCCCCCCCCCcCHHHHHHHHHHHHHHHHHH---HhCCCCeEEEEE
Confidence 47999999999999998632 3333322 234567777775432 35677777777776666655 456778999999
Q ss_pred ehhhhcCChhhHHHHHHHHHHHhhccCCcccCCCceEEccCCccchhhHHHHHHhhccCCCCCCceEEEEecCCCceeeE
Q 048388 151 TAGLRQLGVDASDRILQAVRDLLKYKSAFKSKPEWVTVLDGSQEGSYQWVTINYLLGNLGKKYSNTVGVVDLGGGSVQMA 230 (477)
Q Consensus 151 TAGmR~l~~~~~~~il~~vr~~l~~~~~f~~~~~~v~IIsG~eEg~y~WvavNyllg~l~~~~~~t~gviDlGGgStQia 230 (477)
|++||. +.|+++|++.|+...+ + .++||||+|||.|.|+++...+.. ....++||||||||++
T Consensus 78 Tsa~R~--A~N~~~~~~~i~~~tg----i-----~i~visg~eEa~l~~~gv~~~~~~------~~~~v~DiGGGSte~~ 140 (300)
T TIGR03706 78 TAALRD--AKNGPEFLREAEAILG----L-----PIEVISGEEEARLIYLGVAHTLPI------ADGLVVDIGGGSTELI 140 (300)
T ss_pred cHHHHc--CCCHHHHHHHHHHHHC----C-----CeEEeChHHHHHHHHHHHHhCCCC------CCcEEEEecCCeEEEE
Confidence 999999 6899999999999755 4 899999999999999999866532 2248999999999999
Q ss_pred EeeccccccCCCCCCCCCCceeEEEEECCeEEEEEEeeeccccHHHHHHHHHhhcCCCCCCccCCcccceeeeCCceeec
Q 048388 231 YAISEKDAANAPTVPEGEDQYVNEMYLMGTKYYLYVHSYLHYGLLAARTEILKVTKDSDNPCILAGYDGSYKYGGEEYKA 310 (477)
Q Consensus 231 f~~~~~~~~~~p~~~~~~~~~~~~~~l~g~~y~lY~hSyLgyG~~aar~~ilk~~~~~~~PC~~~G~~~~~~~~g~~~~~ 310 (477)
+.... .. ++++|+ -+|.......+..
T Consensus 141 ~~~~~--------------~~------------~~~~Sl-~lG~vrl~e~f~~--------------------------- 166 (300)
T TIGR03706 141 LGKDF--------------EP------------GEGVSL-PLGCVRLTEQFFP--------------------------- 166 (300)
T ss_pred EecCC--------------CE------------eEEEEE-ccceEEhHHhhCC---------------------------
Confidence 97432 11 222222 1444222222221
Q ss_pred cCCCCCCCHHhHHHHHHHhhhccCCCCCcccCCCCccCCCCCCCCCcceEeeehhhhhhhc--Ccc--CC-CCCCcccCh
Q 048388 311 SASPSGSNIEECQSVAIKALKVNDTCTHMQCTFGGVWNGGGGDGQKNMFVASFFFDRAAEA--GFI--DQ-NEPVAKVRP 385 (477)
Q Consensus 311 ~~~~~~g~~~~C~~~i~~~L~~~~~C~~~~csf~gv~~~~~~~~~~~~y~~S~f~~~~~~~--g~~--~~-~~~~~~~~~ 385 (477)
..++.....+.+++.+++.|+.. +. + +. .+...+++.++-+.....+ +.. ++ ...+..++.
T Consensus 167 ~~~~~~~~~~~~~~~i~~~l~~~---~~----~-----~~--~~~~~lig~gGt~~~la~~~~~~~~~~~~~~~~~~l~~ 232 (300)
T TIGR03706 167 DGPISKKSLKQARKAAREELASL---KW----L-----KK--GGWRPLYGVGGTWRALARIHQAQHGYPLHGLHGYTITA 232 (300)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHh---HH----H-----hh--CCCCEEEEehHHHHHHHHHHHhcccCCCcCccCCEECH
Confidence 01111234566777776665311 00 0 00 0122466665544333222 110 11 111235899
Q ss_pred HHHHHHHHHHccCChhhhhhhCCCCCCCCcccccccHHHHHHHhhcccCCC
Q 048388 386 GDFESAAKRACQTKLEDAKSIYPRVDESNLPYICMDLVYQHALLVVGFGLD 436 (477)
Q Consensus 386 ~~~~~aa~~~C~~~~~~~~~~~p~~~~~~l~~~Cfd~~Y~~~LL~dGfgl~ 436 (477)
++|.+..+++++++.++..+. +.+++++.......+.-+..++ +-+|.+
T Consensus 233 ~~~~~~~~~l~~~~~~~r~~~-~gl~~~Rad~i~~g~~i~~~l~-~~~~~~ 281 (300)
T TIGR03706 233 EGLLELLEELIKLSREERLKL-PGLSKDRADILPGGAAVLEELF-RALGIE 281 (300)
T ss_pred HHHHHHHHHHHcCCHHHHHhC-CCCCHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence 999999999999998887766 4555554444444444444444 566654
No 7
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.74 E-value=1.8e-17 Score=177.00 Aligned_cols=145 Identities=23% Similarity=0.261 Sum_probs=115.2
Q ss_pred eEEEEEEcCCCccEEEEEEEeCCCCceecccccceEEeecCCccccCC-ChHHHHHHHHHHHHHHHhhCCCCCCCCccEE
Q 048388 69 SYAVIFDAGSSGSRVHVYCFDQNLDLVPIGKDLELFVQTKPGLSAYAS-DPQAAANSLASLLDKAQSVVPQDLRPKTPVK 147 (477)
Q Consensus 69 ~y~vvIDaGSsgsRl~Vy~~~~~~~l~~i~~~~e~~~k~~pGLs~~~~-~~~~~~~~l~~ll~~a~~~vp~~~~~~tpi~ 147 (477)
.+ ++||+|||+.|+.|++... ..+..+.+ .....+++.|+.+... +++.+.+.+..|-.+++.. +.++...|+
T Consensus 4 ~~-A~IDiGSNS~rlvV~~~~~-~~~~~l~~-~k~~vrLgegl~~~g~L~~eai~R~~~aL~~f~e~~---~~~~~~~v~ 77 (492)
T COG0248 4 RV-AAIDLGSNSFRLVVAEITP-GSFQVLFR-EKRIVRLGEGLDATGNLSEEAIERALSALKRFAELL---DGFGAEEVR 77 (492)
T ss_pred eE-EEEEecCCeEEEEEEeccC-Cccchhhh-hhhheehhcCccccCCcCHHHHHHHHHHHHHHHHHH---hhCCCCEEE
Confidence 45 4799999999999999875 23323322 2356788899987755 6666677777776666665 455677899
Q ss_pred EEeehhhhcCChhhHHHHHHHHHHHhhccCCcccCCCceEEccCCccchhhHHHHHHhhccCCCCCCceEEEEecCCCce
Q 048388 148 VGATAGLRQLGVDASDRILQAVRDLLKYKSAFKSKPEWVTVLDGSQEGSYQWVTINYLLGNLGKKYSNTVGVVDLGGGSV 227 (477)
Q Consensus 148 l~ATAGmR~l~~~~~~~il~~vr~~l~~~~~f~~~~~~v~IIsG~eEg~y~WvavNyllg~l~~~~~~t~gviDlGGgSt 227 (477)
++||+++|. +.|+++|++.+++.++. .|+||||+|||+|.++||-..++. .....++|||||||
T Consensus 78 ~vATsA~R~--A~N~~eFl~rv~~~~G~---------~ievIsGeeEArl~~lGv~~~~~~-----~~~~lv~DIGGGSt 141 (492)
T COG0248 78 VVATSALRD--APNGDEFLARVEKELGL---------PIEVISGEEEARLIYLGVASTLPR-----KGDGLVIDIGGGST 141 (492)
T ss_pred EehhHHHHc--CCCHHHHHHHHHHHhCC---------ceEEeccHHHHHHHHHHHHhcCCC-----CCCEEEEEecCCeE
Confidence 999999999 56999999999998764 899999999999999999888753 24578999999999
Q ss_pred eeEEeecc
Q 048388 228 QMAYAISE 235 (477)
Q Consensus 228 Qiaf~~~~ 235 (477)
|+++....
T Consensus 142 El~~g~~~ 149 (492)
T COG0248 142 ELVLGDNF 149 (492)
T ss_pred EEEEecCC
Confidence 99998644
No 8
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=99.73 E-value=2.9e-17 Score=176.93 Aligned_cols=145 Identities=22% Similarity=0.260 Sum_probs=112.2
Q ss_pred eEEEEEEcCCCccEEEEEEEeCCCCceecccccceEEeecCCccccCC-ChHHHHHHHHHHHHHHHhhCCCCCCCCccEE
Q 048388 69 SYAVIFDAGSSGSRVHVYCFDQNLDLVPIGKDLELFVQTKPGLSAYAS-DPQAAANSLASLLDKAQSVVPQDLRPKTPVK 147 (477)
Q Consensus 69 ~y~vvIDaGSsgsRl~Vy~~~~~~~l~~i~~~~e~~~k~~pGLs~~~~-~~~~~~~~l~~ll~~a~~~vp~~~~~~tpi~ 147 (477)
.+.+|||+|||+.|+.||+...+ .+..+.+. ....+++.|+..... +++.+.+.+..|-.+++.. ..++.+.+.
T Consensus 6 ~~~A~IDIGSNSirL~I~~~~~~-~~~~l~~~-k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~F~~~~---~~~~v~~i~ 80 (496)
T PRK11031 6 SLYAAIDLGSNSFHMLVVREVAG-SIQTLARI-KRKVRLAAGLDSDNALSNEAMERGWQCLRLFAERL---QDIPPSQIR 80 (496)
T ss_pred CEEEEEEccccceeEEEEEecCC-ceEEeecc-eeEEEccCCcCcCCCcCHHHHHHHHHHHHHHHHHH---HhCCCCeEE
Confidence 34568999999999999997653 44334332 355778878765332 5777777777776666655 456678899
Q ss_pred EEeehhhhcCChhhHHHHHHHHHHHhhccCCcccCCCceEEccCCccchhhHHHHHHhhccCCCCCCceEEEEecCCCce
Q 048388 148 VGATAGLRQLGVDASDRILQAVRDLLKYKSAFKSKPEWVTVLDGSQEGSYQWVTINYLLGNLGKKYSNTVGVVDLGGGSV 227 (477)
Q Consensus 148 l~ATAGmR~l~~~~~~~il~~vr~~l~~~~~f~~~~~~v~IIsG~eEg~y~WvavNyllg~l~~~~~~t~gviDlGGgSt 227 (477)
++||+++|. +.|+++|++.|++.++ + .|+||||+|||.|.++|+-..+.. .++..++|||||||
T Consensus 81 ~vATsAvRe--A~N~~~fl~~i~~~tG----l-----~ievIsG~eEA~l~~~gv~~~l~~-----~~~~lviDIGGGSt 144 (496)
T PRK11031 81 VVATATLRL--AVNADEFLAKAQEILG----C-----PVQVISGEEEARLIYQGVAHTTGG-----ADQRLVVDIGGAST 144 (496)
T ss_pred EEEeHHHHc--CcCHHHHHHHHHHHHC----C-----CeEEeCHHHHHHHHHHhhhhccCC-----CCCEEEEEecCCee
Confidence 999999999 6799999999999755 5 899999999999999999766531 23468999999999
Q ss_pred eeEEeec
Q 048388 228 QMAYAIS 234 (477)
Q Consensus 228 Qiaf~~~ 234 (477)
|+++...
T Consensus 145 El~~~~~ 151 (496)
T PRK11031 145 ELVTGTG 151 (496)
T ss_pred eEEEecC
Confidence 9998743
No 9
>PRK10854 exopolyphosphatase; Provisional
Probab=99.71 E-value=6.4e-17 Score=175.01 Aligned_cols=144 Identities=19% Similarity=0.237 Sum_probs=110.8
Q ss_pred EEEEEEcCCCccEEEEEEEeCCCCceecccccceEEeecCCccccCC-ChHHHHHHHHHHHHHHHhhCCCCCCCCccEEE
Q 048388 70 YAVIFDAGSSGSRVHVYCFDQNLDLVPIGKDLELFVQTKPGLSAYAS-DPQAAANSLASLLDKAQSVVPQDLRPKTPVKV 148 (477)
Q Consensus 70 y~vvIDaGSsgsRl~Vy~~~~~~~l~~i~~~~e~~~k~~pGLs~~~~-~~~~~~~~l~~ll~~a~~~vp~~~~~~tpi~l 148 (477)
..+|||+|||+.||.||+...+ .+..+.+ .....+++.|+..... +++.+.+.+..|-.+.+.. ..++.+.+.+
T Consensus 12 ~~A~IDIGSNSirL~I~e~~~~-~~~~i~~-~k~~vrLg~g~~~~g~Ls~e~~~r~~~~L~~F~~~~---~~~~v~~v~~ 86 (513)
T PRK10854 12 EFAAVDLGSNSFHMVIARVVDG-AMQIIGR-LKQRVHLADGLDSDNMLSEEAMERGLNCLSLFAERL---QGFSPANVCI 86 (513)
T ss_pred EEEEEEeccchheEEEEEecCC-cEEEeee-eeEEEECCCCcCCCCCcCHHHHHHHHHHHHHHHHHH---HhCCCCeEEE
Confidence 4458999999999999998643 4433333 2345677777765432 5677777777766666555 3456779999
Q ss_pred EeehhhhcCChhhHHHHHHHHHHHhhccCCcccCCCceEEccCCccchhhHHHHHHhhccCCCCCCceEEEEecCCCcee
Q 048388 149 GATAGLRQLGVDASDRILQAVRDLLKYKSAFKSKPEWVTVLDGSQEGSYQWVTINYLLGNLGKKYSNTVGVVDLGGGSVQ 228 (477)
Q Consensus 149 ~ATAGmR~l~~~~~~~il~~vr~~l~~~~~f~~~~~~v~IIsG~eEg~y~WvavNyllg~l~~~~~~t~gviDlGGgStQ 228 (477)
+||++||. +.|+++|+++|++.++ + .|+||||+|||+|.|+|+-..+.. .+...++||||||||
T Consensus 87 vATsAlRe--A~N~~~fl~~i~~~tG----l-----~i~vIsG~EEA~l~~~gv~~~l~~-----~~~~lvvDIGGGStE 150 (513)
T PRK10854 87 VGTHTLRQ--ALNATDFLKRAEKVIP----Y-----PIEIISGNEEARLIFMGVEHTQPE-----KGRKLVIDIGGGSTE 150 (513)
T ss_pred EehHHHHc--CcCHHHHHHHHHHHHC----C-----CeEEeCHHHHHHHHHhhhhcccCC-----CCCeEEEEeCCCeEE
Confidence 99999999 6899999999999765 5 899999999999999999766531 245689999999999
Q ss_pred eEEeec
Q 048388 229 MAYAIS 234 (477)
Q Consensus 229 iaf~~~ 234 (477)
+++...
T Consensus 151 l~~~~~ 156 (513)
T PRK10854 151 LVIGEN 156 (513)
T ss_pred EEEecC
Confidence 998744
No 10
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=99.43 E-value=3e-13 Score=135.83 Aligned_cols=263 Identities=16% Similarity=0.208 Sum_probs=147.6
Q ss_pred EEEEEeCCCCceecccccceEEeecCCccccCC-ChHHHHHHHHHHHHHHHhhCCCCCCCCccEEEEeehhhhcCChhhH
Q 048388 84 HVYCFDQNLDLVPIGKDLELFVQTKPGLSAYAS-DPQAAANSLASLLDKAQSVVPQDLRPKTPVKVGATAGLRQLGVDAS 162 (477)
Q Consensus 84 ~Vy~~~~~~~l~~i~~~~e~~~k~~pGLs~~~~-~~~~~~~~l~~ll~~a~~~vp~~~~~~tpi~l~ATAGmR~l~~~~~ 162 (477)
.||+.+.+ .+..+ .+.....+++.|+..-.. .++.+.+.+..|-++.+.. ..++.+.++++||++||. +.|+
T Consensus 1 ~I~~~~~~-~~~~l-~~~~~~vrLg~~~~~~g~i~~e~i~r~~~~L~~f~~~~---~~~~v~~i~~vATsA~R~--A~N~ 73 (285)
T PF02541_consen 1 VIAEVKDG-KFKIL-EEEKEIVRLGEGVFETGRISEEAIERAIDALKRFKEIL---KDYGVEKIRAVATSALRE--AKNS 73 (285)
T ss_dssp EEEEEETT-EEEEE-EEEEEE--TTTTHHHHSSB-HHHHHHHHHHHHHHHHHH---HHTTGSEEEEEEEHHHHH--STTH
T ss_pred CEEEeCCC-CeEEe-eeceEEEEcccccccCCCcCHHHHHHHHHHHHHHHHHH---HHCCCCEEEEEhhHHHHh--CcCH
Confidence 36766654 23222 222244556666543333 4555565555555554443 345678999999999999 6799
Q ss_pred HHHHHHHHHHhhccCCcccCCCceEEccCCccchhhHHHHHHhhccCCCCCCceEEEEecCCCceeeEEeeccccccCCC
Q 048388 163 DRILQAVRDLLKYKSAFKSKPEWVTVLDGSQEGSYQWVTINYLLGNLGKKYSNTVGVVDLGGGSVQMAYAISEKDAANAP 242 (477)
Q Consensus 163 ~~il~~vr~~l~~~~~f~~~~~~v~IIsG~eEg~y~WvavNyllg~l~~~~~~t~gviDlGGgStQiaf~~~~~~~~~~p 242 (477)
++|+++|++.++ + .++||||+|||.|.++|+-..+ . ..+...++|+||||||+++..+..
T Consensus 74 ~~~~~~i~~~tG----i-----~i~iIsgeeEa~l~~~gv~~~l--~---~~~~~lviDIGGGStEl~~~~~~~------ 133 (285)
T PF02541_consen 74 DEFLDRIKKETG----I-----DIEIISGEEEARLSFLGVLSSL--P---PDKNGLVIDIGGGSTELILFENGK------ 133 (285)
T ss_dssp HHHHHHHHHHHS----S------EEEE-HHHHHHHHHHHHHHHS--T---TTSSEEEEEEESSEEEEEEEETTE------
T ss_pred HHHHHHHHHHhC----C-----ceEEecHHHHHHHHHHHHHhhc--c---ccCCEEEEEECCCceEEEEEECCe------
Confidence 999999999766 4 8999999999999999996654 1 135678999999999999874421
Q ss_pred CCCCCCCceeEEEEECCeEEEEEEeeeccccHHHHHHHHHhhcCCCCCCccCCcccceeeeCCceeeccCCCCCCCHHhH
Q 048388 243 TVPEGEDQYVNEMYLMGTKYYLYVHSYLHYGLLAARTEILKVTKDSDNPCILAGYDGSYKYGGEEYKASASPSGSNIEEC 322 (477)
Q Consensus 243 ~~~~~~~~~~~~~~l~g~~y~lY~hSyLgyG~~aar~~ilk~~~~~~~PC~~~G~~~~~~~~g~~~~~~~~~~~g~~~~C 322 (477)
-.+++|+ -+|......++.+.. .+.....+.+
T Consensus 134 --------------------~~~~~Sl-~lG~vrl~e~~~~~~---------------------------~~~~~~~~~~ 165 (285)
T PF02541_consen 134 --------------------VVFSQSL-PLGAVRLTERFFKSD---------------------------PPTAEELEKL 165 (285)
T ss_dssp --------------------EEEEEEE-S--HHHHHHHHSGCS---------------------------S-HHHHHHHH
T ss_pred --------------------eeEeeee-ehHHHHHHHHHhccC---------------------------cchHHHHHHH
Confidence 1233333 377765555444210 0001234555
Q ss_pred HHHHHHhhhccCCCCCcccCCCCccCCCCCCCCCcceEeeehhhhhhhcCccCCCCCCcccChHHHHHHHHHHccCChhh
Q 048388 323 QSVAIKALKVNDTCTHMQCTFGGVWNGGGGDGQKNMFVASFFFDRAAEAGFIDQNEPVAKVRPGDFESAAKRACQTKLED 402 (477)
Q Consensus 323 ~~~i~~~L~~~~~C~~~~csf~gv~~~~~~~~~~~~y~~S~f~~~~~~~g~~~~~~~~~~~~~~~~~~aa~~~C~~~~~~ 402 (477)
++.+.+.|..- +. .+...+ ....+.+.+............. ..+...++.++|.+..+++..++.++
T Consensus 166 ~~~i~~~l~~~--~~--~~~~~~--------~~~~~~g~~~~~~~~~~~~~~~-~~~~~~i~~~~l~~~~~~l~~~~~ee 232 (285)
T PF02541_consen 166 REFIRKELEEL--KW--EFPKGG--------GTIRIIGTSGTIRALYPLKKIH-GKEGYEITREDLEELLEKLSKMSPEE 232 (285)
T ss_dssp HHHHHHHHCTT--HH--HHHHHC--------HHCEEECCCHHHHHHHHHHHHT-TCSSCEEEHHHHHHHHHHHHTSSHHH
T ss_pred HHHHHHHHHHH--HH--HhhhcC--------CceeeecHHHHHHHHHHHHHhc-CCCCceECHHHHHHHHHHHHcCChHH
Confidence 66666555311 11 111111 0112222333222222211111 11135789999999999999999877
Q ss_pred hhhhCCCCCCCCcccccccHHHHHHHhhcccCCC
Q 048388 403 AKSIYPRVDESNLPYICMDLVYQHALLVVGFGLD 436 (477)
Q Consensus 403 ~~~~~p~~~~~~l~~~Cfd~~Y~~~LL~dGfgl~ 436 (477)
..+. +.+++++.... .-.+-++.-|.+-|+.+
T Consensus 233 ~~~~-~gl~~~Ra~~i-~~g~~i~~~l~~~~~~~ 264 (285)
T PF02541_consen 233 RAKI-PGLSPDRADII-LPGALILKALLEAFGAE 264 (285)
T ss_dssp HHTS-TTSHHCHHTTH-HHHHHHHHHHHHHHTHS
T ss_pred HHHc-cCCCHHHHHhH-HHHHHHHHHHHHHcCCC
Confidence 6554 55544443333 33444444444666654
No 11
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=97.57 E-value=0.00055 Score=68.49 Aligned_cols=129 Identities=21% Similarity=0.247 Sum_probs=74.7
Q ss_pred CceEEEEEEcCCCccEEEEEEEeCCCCceecccccceEEeecCCccccCCChHHHHHHHHHHHHHHHhhCCCCCCCCccE
Q 048388 67 SKSYAVIFDAGSSGSRVHVYCFDQNLDLVPIGKDLELFVQTKPGLSAYASDPQAAANSLASLLDKAQSVVPQDLRPKTPV 146 (477)
Q Consensus 67 ~~~y~vvIDaGSsgsRl~Vy~~~~~~~l~~i~~~~e~~~k~~pGLs~~~~~~~~~~~~l~~ll~~a~~~vp~~~~~~tpi 146 (477)
...+.++||+|||+.|+.|++...+ .+.++.. ...-+..|. ..+.+.+...|..+++.|++..... +
T Consensus 22 ~~~~~~~iDiGSssi~~vv~~~~~~--~~~~~~~--~~~~vr~G~---i~di~~a~~~i~~~~~~ae~~~g~~------i 88 (267)
T PRK15080 22 ESPLKVGVDLGTANIVLAVLDEDGQ--PVAGALE--WADVVRDGI---VVDFIGAVTIVRRLKATLEEKLGRE------L 88 (267)
T ss_pred CCCEEEEEEccCceEEEEEEcCCCC--EEEEEec--cccccCCCE---EeeHHHHHHHHHHHHHHHHHHhCCC------c
Confidence 4668899999999999999864322 2222211 111122221 2367888899999999988774321 2
Q ss_pred EEEeehhhhcCC-hhhHHHHHHHHHHHhhccCCcccCCCceE-EccCCccchhhHHHHHHhhccCCCCCCceEEEEecCC
Q 048388 147 KVGATAGLRQLG-VDASDRILQAVRDLLKYKSAFKSKPEWVT-VLDGSQEGSYQWVTINYLLGNLGKKYSNTVGVVDLGG 224 (477)
Q Consensus 147 ~l~ATAGmR~l~-~~~~~~il~~vr~~l~~~~~f~~~~~~v~-IIsG~eEg~y~WvavNyllg~l~~~~~~t~gviDlGG 224 (477)
.-.+| +++.-. ..++..+.+.++. .++ .+. ++++. . |+.+.++ + +...++||||
T Consensus 89 ~~v~~-~vp~~~~~~~~~~~~~~~~~-----aGl-----~~~~ii~e~-~------A~a~~~~-~-----~~~~vvDIGg 144 (267)
T PRK15080 89 THAAT-AIPPGTSEGDPRAIINVVES-----AGL-----EVTHVLDEP-T------AAAAVLG-I-----DNGAVVDIGG 144 (267)
T ss_pred CeEEE-EeCCCCCchhHHHHHHHHHH-----cCC-----ceEEEechH-H------HHHHHhC-C-----CCcEEEEeCC
Confidence 23344 344422 2345555544443 455 454 55533 2 2222222 1 1357999999
Q ss_pred CceeeEEe
Q 048388 225 GSVQMAYA 232 (477)
Q Consensus 225 gStQiaf~ 232 (477)
|+|+++..
T Consensus 145 gtt~i~v~ 152 (267)
T PRK15080 145 GTTGISIL 152 (267)
T ss_pred CcEEEEEE
Confidence 99999875
No 12
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=94.94 E-value=0.41 Score=51.04 Aligned_cols=64 Identities=14% Similarity=0.091 Sum_probs=42.7
Q ss_pred eEEEEEEcCCCccEEEEEEEeCCCCceecccccceEEeecCCcccc-CCChHHHHHHHHHHHHHHHhhC
Q 048388 69 SYAVIFDAGSSGSRVHVYCFDQNLDLVPIGKDLELFVQTKPGLSAY-ASDPQAAANSLASLLDKAQSVV 136 (477)
Q Consensus 69 ~y~vvIDaGSsgsRl~Vy~~~~~~~l~~i~~~~e~~~k~~pGLs~~-~~~~~~~~~~l~~ll~~a~~~v 136 (477)
+..+.+|+||+.+++.|-++..+..+.-++- -.....|+..- -.|.+.+.++++.+++.|++..
T Consensus 8 ~~i~~lDIGsskv~~vv~~~~~~~~~~i~g~----~~~~s~gi~~G~I~d~~~~~~aI~~av~~ae~~~ 72 (420)
T PRK09472 8 KLVVGLEIGTAKVAALVGEVLPDGMVNIIGV----GSCPSRGMDKGGVNDLESVVKCVQRAIDQAELMA 72 (420)
T ss_pred CEEEEEEcccceEEEEEEEEcCCCCEEEEEE----EEccCCCccCCEEEcHHHHHHHHHHHHHHHHHHh
Confidence 4778899999999999998765433221111 11112344322 2378999999999999998753
No 13
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=93.75 E-value=1.4 Score=45.39 Aligned_cols=95 Identities=22% Similarity=0.224 Sum_probs=52.0
Q ss_pred ChHHHHHHHHHHHHHHHhhCCCCCCCCccEEEEeehhhhcCChhhHHHHHHHHHHHhhccCCcccCCCceEEccCCccch
Q 048388 117 DPQAAANSLASLLDKAQSVVPQDLRPKTPVKVGATAGLRQLGVDASDRILQAVRDLLKYKSAFKSKPEWVTVLDGSQEGS 196 (477)
Q Consensus 117 ~~~~~~~~l~~ll~~a~~~vp~~~~~~tpi~l~ATAGmR~l~~~~~~~il~~vr~~l~~~~~f~~~~~~v~IIsG~eEg~ 196 (477)
+.+.++.-|..+++.+...+.... ...++. .+... ..+..+++++.++++. .++. .+.++.-.
T Consensus 73 d~d~~~~~l~~~~~~~~~~l~~~~-~~~~vv-itvP~--~~~~~~R~~l~~a~~~-----ag~~----~~~li~ep---- 135 (335)
T PRK13929 73 DYDMTTDLLKQIMKKAGKNIGMTF-RKPNVV-VCTPS--GSTAVERRAISDAVKN-----CGAK----NVHLIEEP---- 135 (335)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCC-CCCeEE-EEcCC--CCCHHHHHHHHHHHHH-----cCCC----eeEeecCH----
Confidence 566667777788877655432111 112333 33332 2346778888776665 2231 45555433
Q ss_pred hhHHHHHHhhccCCCCCCceEEEEecCCCceeeEEe
Q 048388 197 YQWVTINYLLGNLGKKYSNTVGVVDLGGGSVQMAYA 232 (477)
Q Consensus 197 y~WvavNyllg~l~~~~~~t~gviDlGGgStQiaf~ 232 (477)
+++.+..| +......++.++|+|||+|+++..
T Consensus 136 ---~Aaa~~~g-~~~~~~~~~lvvDiG~gtt~v~vi 167 (335)
T PRK13929 136 ---VAAAIGAD-LPVDEPVANVVVDIGGGTTEVAII 167 (335)
T ss_pred ---HHHHHhcC-CCcCCCceEEEEEeCCCeEEEEEE
Confidence 22222222 121223457899999999999975
No 14
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=93.33 E-value=2.5 Score=44.09 Aligned_cols=64 Identities=22% Similarity=0.174 Sum_probs=42.7
Q ss_pred EEEEEcCCCccEEEEEEEeCCCCceecccccceEEeecCCcccc-CCChHHHHHHHHHHHHHHHhhCCC
Q 048388 71 AVIFDAGSSGSRVHVYCFDQNLDLVPIGKDLELFVQTKPGLSAY-ASDPQAAANSLASLLDKAQSVVPQ 138 (477)
Q Consensus 71 ~vvIDaGSsgsRl~Vy~~~~~~~l~~i~~~~e~~~k~~pGLs~~-~~~~~~~~~~l~~ll~~a~~~vp~ 138 (477)
.+.||+||+.+++.+-+...+..+.-++ .-..-.+|+..- -.+.+.+.+.+..+++.|++..+.
T Consensus 2 ~~~lDIGs~~ik~vv~~~~~~~~~~i~~----~~~~~~~gi~~G~I~d~~~~~~~i~~al~~~e~~~~~ 66 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEVLEDGELNIIG----VGTHPSRGIKKGVINDIEAAVGSIQRAIEAAELMAGC 66 (371)
T ss_pred EEEEEeccceEEEEEEEEcCCCCEEEEE----EEEecCCCccCcEEEcHHHHHHHHHHHHHHHHHHhCC
Confidence 3579999999999999876543222211 111122355432 237889999999999999877553
No 15
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=92.60 E-value=1.5 Score=45.36 Aligned_cols=93 Identities=23% Similarity=0.249 Sum_probs=51.0
Q ss_pred ChHHHHHHHHHHHHHHHhhCCCCCCCCccEEEEeehhhhcCChhhHHHHHHHHHHHhhccCCcccCCCceEEccCCccch
Q 048388 117 DPQAAANSLASLLDKAQSVVPQDLRPKTPVKVGATAGLRQLGVDASDRILQAVRDLLKYKSAFKSKPEWVTVLDGSQEGS 196 (477)
Q Consensus 117 ~~~~~~~~l~~ll~~a~~~vp~~~~~~tpi~l~ATAGmR~l~~~~~~~il~~vr~~l~~~~~f~~~~~~v~IIsG~eEg~ 196 (477)
|.+.+...|..+++.+... .......+.+...+++- +-++.++.+++++. +. ..|.+|+ |.
T Consensus 70 D~~~~~~~l~~~l~k~~~~---~~~~~p~vvi~vP~~~T---~verrA~~~a~~~a-Ga--------~~V~li~---ep- 130 (326)
T PF06723_consen 70 DYEAAEEMLRYFLKKALGR---RSFFRPRVVICVPSGIT---EVERRALIDAARQA-GA--------RKVYLIE---EP- 130 (326)
T ss_dssp SHHHHHHHHHHHHHHHHTS---S-SS--EEEEEE-SS-----HHHHHHHHHHHHHT-T---------SEEEEEE---HH-
T ss_pred CHHHHHHHHHHHHHHhccC---CCCCCCeEEEEeCCCCC---HHHHHHHHHHHHHc-CC--------CEEEEec---ch-
Confidence 5667777888888877763 12233346666555544 35788888888763 21 1566665 33
Q ss_pred hhHHHHHHhhccCCCCCCceEEEEecCCCceeeEEe
Q 048388 197 YQWVTINYLLGNLGKKYSNTVGVVDLGGGSVQMAYA 232 (477)
Q Consensus 197 y~WvavNyllg~l~~~~~~t~gviDlGGgStQiaf~ 232 (477)
+++.+..| +.-......-++|+|||.|+|+-.
T Consensus 131 ---~AaAiGaG-l~i~~~~g~miVDIG~GtTdiavi 162 (326)
T PF06723_consen 131 ---IAAAIGAG-LDIFEPRGSMIVDIGGGTTDIAVI 162 (326)
T ss_dssp ---HHHHHHTT---TTSSS-EEEEEE-SS-EEEEEE
T ss_pred ---HHHHhcCC-CCCCCCCceEEEEECCCeEEEEEE
Confidence 33333333 211122345799999999999976
No 16
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=92.11 E-value=0.53 Score=45.94 Aligned_cols=79 Identities=14% Similarity=0.178 Sum_probs=45.0
Q ss_pred EEEEEEcCCCccEEEEEEEeCCCCceecccccceEEeecCCccccCCChHHHHHHHHHHHHHHHhhCCCCCCCCccEEEE
Q 048388 70 YAVIFDAGSSGSRVHVYCFDQNLDLVPIGKDLELFVQTKPGLSAYASDPQAAANSLASLLDKAQSVVPQDLRPKTPVKVG 149 (477)
Q Consensus 70 y~vvIDaGSsgsRl~Vy~~~~~~~l~~i~~~~e~~~k~~pGLs~~~~~~~~~~~~l~~ll~~a~~~vp~~~~~~tpi~l~ 149 (477)
|.+.||+|+|++|+.+|. .+..++..... .+....+.-.....+|++..+.+..+++.+.+..+. ....|...
T Consensus 1 y~lgiDiGTts~K~~l~d--~~g~iv~~~~~--~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~---~~~~I~aI 73 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFD--EDGKIVASASR--PYPYYTPEPGWAEQDPDEIWEAICEALKELLSQAGI---DPEQIKAI 73 (245)
T ss_dssp EEEEEEECSSEEEEEEEE--TTSCEEEEEEE--EETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHCTS---CGGGEEEE
T ss_pred CEEEEEEcccceEEEEEe--CCCCEEEEEEE--eeeeccccccccccChHHHHHHHHHHHHHHHhhcCc---ccceeEEE
Confidence 778999999999999997 44455432211 111111111222358888888888888887766421 22334545
Q ss_pred eehhhh
Q 048388 150 ATAGLR 155 (477)
Q Consensus 150 ATAGmR 155 (477)
+..|.+
T Consensus 74 ~is~~~ 79 (245)
T PF00370_consen 74 GISGQG 79 (245)
T ss_dssp EEEE-S
T ss_pred Eecccc
Confidence 544433
No 17
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=91.99 E-value=4 Score=41.65 Aligned_cols=18 Identities=39% Similarity=0.564 Sum_probs=15.3
Q ss_pred ceEEEEecCCCceeeEEe
Q 048388 215 NTVGVVDLGGGSVQMAYA 232 (477)
Q Consensus 215 ~t~gviDlGGgStQiaf~ 232 (477)
.+..|+|+|||.|+++..
T Consensus 152 ~~~lVvDiG~gttdvs~v 169 (335)
T PRK13930 152 VGNMVVDIGGGTTEVAVI 169 (335)
T ss_pred CceEEEEeCCCeEEEEEE
Confidence 346799999999999865
No 18
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=91.39 E-value=1.7 Score=42.81 Aligned_cols=122 Identities=18% Similarity=0.172 Sum_probs=69.1
Q ss_pred EEcCCCccEEEEEEEeCCCCceecccccceEEee-cCCcccc-CCChHHHHHHHHHHHHHHHhhCCCCCCCCccEEEEee
Q 048388 74 FDAGSSGSRVHVYCFDQNLDLVPIGKDLELFVQT-KPGLSAY-ASDPQAAANSLASLLDKAQSVVPQDLRPKTPVKVGAT 151 (477)
Q Consensus 74 IDaGSsgsRl~Vy~~~~~~~l~~i~~~~e~~~k~-~pGLs~~-~~~~~~~~~~l~~ll~~a~~~vp~~~~~~tpi~l~AT 151 (477)
+|+||++.++.+.+-+.+ . +- .... +.++..- -.|.+.+...|..+.+.++..+.. ..+.+.+--.
T Consensus 2 ~dig~~~ik~v~~~~~~~-~-~~-------~~~~~~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g~---~~~~vvisVP 69 (239)
T TIGR02529 2 VDLGTANIVIVVLDEDGQ-P-VA-------GVMQFADVVRDGIVVDFLGAVEIVRRLKDTLEQKLGI---ELTHAATAIP 69 (239)
T ss_pred CCcccceEEEEEEecCCC-E-EE-------EEecccccccCCeEEEhHHHHHHHHHHHHHHHHHhCC---CcCcEEEEEC
Confidence 799999999999865542 1 11 1111 1122221 127888899999999988776532 2334444434
Q ss_pred hhhhcCChhhHHHHHHHHHHHhhccCCcccCCCceEEccCCccchhhHHHHHHhhccCCCCCCceEEEEecCCCceeeEE
Q 048388 152 AGLRQLGVDASDRILQAVRDLLKYKSAFKSKPEWVTVLDGSQEGSYQWVTINYLLGNLGKKYSNTVGVVDLGGGSVQMAY 231 (477)
Q Consensus 152 AGmR~l~~~~~~~il~~vr~~l~~~~~f~~~~~~v~IIsG~eEg~y~WvavNyllg~l~~~~~~t~gviDlGGgStQiaf 231 (477)
+... ..+++++.++++. .++. .+.++ .|..-.+++ |.+ ....++||||++|.++.
T Consensus 70 ~~~~---~~~r~a~~~a~~~-----aGl~----~~~li---~ep~Aaa~~--~~~--------~~~~vvDiGggtt~i~i 124 (239)
T TIGR02529 70 PGTI---EGDPKVIVNVIES-----AGIE----VLHVL---DEPTAAAAV--LQI--------KNGAVVDVGGGTTGISI 124 (239)
T ss_pred CCCC---cccHHHHHHHHHH-----cCCc----eEEEe---ehHHHHHHH--hcC--------CCcEEEEeCCCcEEEEE
Confidence 4443 3456666665555 3442 22332 333333332 111 13589999999999986
Q ss_pred e
Q 048388 232 A 232 (477)
Q Consensus 232 ~ 232 (477)
.
T Consensus 125 ~ 125 (239)
T TIGR02529 125 L 125 (239)
T ss_pred E
Confidence 4
No 19
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=91.33 E-value=4.2 Score=41.60 Aligned_cols=18 Identities=39% Similarity=0.636 Sum_probs=15.2
Q ss_pred ceEEEEecCCCceeeEEe
Q 048388 215 NTVGVVDLGGGSVQMAYA 232 (477)
Q Consensus 215 ~t~gviDlGGgStQiaf~ 232 (477)
..+.|+|+|||.|+++..
T Consensus 148 ~~~lvvDiGggttdvs~v 165 (334)
T PRK13927 148 TGSMVVDIGGGTTEVAVI 165 (334)
T ss_pred CeEEEEEeCCCeEEEEEE
Confidence 346899999999999965
No 20
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=90.32 E-value=4.5 Score=43.80 Aligned_cols=146 Identities=18% Similarity=0.255 Sum_probs=69.5
Q ss_pred eEEEEEEcCCCccEEEEEEEeC-C----CCc--eecccccceEEee----cCCccccCCChHHHHHHHHHHHHHHH--hh
Q 048388 69 SYAVIFDAGSSGSRVHVYCFDQ-N----LDL--VPIGKDLELFVQT----KPGLSAYASDPQAAANSLASLLDKAQ--SV 135 (477)
Q Consensus 69 ~y~vvIDaGSsgsRl~Vy~~~~-~----~~l--~~i~~~~e~~~k~----~pGLs~~~~~~~~~~~~l~~ll~~a~--~~ 135 (477)
-.-|=||+|+|+|.|.+=+..- + ..+ +.|. +.+.+-|- .|=++.-.-+. +.++.+++.-. .-
T Consensus 6 i~SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I~-dkev~yrS~i~fTPl~~~~~ID~----~~i~~~V~~ey~~Ag 80 (475)
T PRK10719 6 LLSVGIDIGTTTTQVIFSRLELENRASVFQVPRIEII-DKEIIYRSPIYFTPLLKQGEIDE----AAIKELIEEEYQKAG 80 (475)
T ss_pred EEEEEEeccCceEEEEEEEEEEecccccccCceEEEe-eeEEEEecCceecCCCCCccccH----HHHHHHHHHHHHHcC
Confidence 3557799999999999887652 1 111 1111 12222221 23222222233 34444443322 22
Q ss_pred C-CCCCCCCccEEEEeehhhhcCChhhHHHHHHHHHHHhhccCCcccCCCceEEccC-CccchhhHHHHHHhhccCCCCC
Q 048388 136 V-PQDLRPKTPVKVGATAGLRQLGVDASDRILQAVRDLLKYKSAFKSKPEWVTVLDG-SQEGSYQWVTINYLLGNLGKKY 213 (477)
Q Consensus 136 v-p~~~~~~tpi~l~ATAGmR~l~~~~~~~il~~vr~~l~~~~~f~~~~~~v~IIsG-~eEg~y~WvavNyllg~l~~~~ 213 (477)
+ |.+-....-|.-+.|+.+++ ..+.++.+....++ |.+-. -| +-|+.+.=+|.-.. .|..+.
T Consensus 81 i~~~die~~ahIITg~~~~~~N-----l~~~v~~~~~~~gd---fVVA~------AG~~le~iva~~ASg~a--vLseEk 144 (475)
T PRK10719 81 IAPESIDSGAVIITGETARKEN-----AREVVMALSGSAGD---FVVAT------AGPDLESIIAGKGAGAQ--TLSEER 144 (475)
T ss_pred CCHHHccccEEEEEechhHHHH-----HHHHHHHhcccccc---eeeec------cCccHHHhhhHHHhhHH--Hhhhhc
Confidence 2 22222334455566666555 34444443332222 32110 11 23444443333221 122223
Q ss_pred CceEEEEecCCCceeeEEeecc
Q 048388 214 SNTVGVVDLGGGSVQMAYAISE 235 (477)
Q Consensus 214 ~~t~gviDlGGgStQiaf~~~~ 235 (477)
...+.+||||||.|.++...+.
T Consensus 145 e~gVa~IDIGgGTT~iaVf~~G 166 (475)
T PRK10719 145 NTRVLNIDIGGGTANYALFDAG 166 (475)
T ss_pred cCceEEEEeCCCceEEEEEECC
Confidence 3457899999999999988654
No 21
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=88.42 E-value=1.9 Score=47.17 Aligned_cols=86 Identities=14% Similarity=0.148 Sum_probs=56.6
Q ss_pred ceEEEEEEcCCCccEEEEEEEeCCCCceecccccceEEeecCCccccCCChHHHHHHHHHHHHHHHhhCCCCCCCCccEE
Q 048388 68 KSYAVIFDAGSSGSRVHVYCFDQNLDLVPIGKDLELFVQTKPGLSAYASDPQAAANSLASLLDKAQSVVPQDLRPKTPVK 147 (477)
Q Consensus 68 ~~y~vvIDaGSsgsRl~Vy~~~~~~~l~~i~~~~e~~~k~~pGLs~~~~~~~~~~~~l~~ll~~a~~~vp~~~~~~tpi~ 147 (477)
....+.||.|+|++|..||+..++ +++... ++ ......|-=..+..+|+++.+.+..+++.+.+..+.......-+.
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~-e~l~~~-~~-~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~~~~~~ 81 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNG-ELLSLA-QK-EITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIKVVGAT 81 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCC-ccceee-ee-eeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhccccccccccE
Confidence 467789999999999999986554 222211 11 112222222234568999999999999999887765554444466
Q ss_pred EEeehhhhc
Q 048388 148 VGATAGLRQ 156 (477)
Q Consensus 148 l~ATAGmR~ 156 (477)
....++.|.
T Consensus 82 ~igv~~qr~ 90 (516)
T KOG2517|consen 82 CIGVVNQRE 90 (516)
T ss_pred EEEEEecCC
Confidence 666666665
No 22
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=88.16 E-value=2.4 Score=45.39 Aligned_cols=66 Identities=23% Similarity=0.208 Sum_probs=45.6
Q ss_pred EEEEEEcCCCccEEEEEEEeCCCCceecccccceEEeecCCcccc-CCChHHHHHHHHHHHHHHHhhCCCC
Q 048388 70 YAVIFDAGSSGSRVHVYCFDQNLDLVPIGKDLELFVQTKPGLSAY-ASDPQAAANSLASLLDKAQSVVPQD 139 (477)
Q Consensus 70 y~vvIDaGSsgsRl~Vy~~~~~~~l~~i~~~~e~~~k~~pGLs~~-~~~~~~~~~~l~~ll~~a~~~vp~~ 139 (477)
+.+.+|+||+.+...|-+...+..+..++ +-.-...|+..- -.|.+.++++++..++.|++..-..
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g~i~iig----~g~~~SrGik~G~I~di~~~~~sI~~av~~AE~mag~~ 73 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDGRLNIIG----VGSHPSRGIKKGVIVDLDAAAQSIKKAVEAAERMAGCE 73 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcCCCeEEEEe----eecccCcccccceEEcHHHHHHHHHHHHHHHHHhcCCC
Confidence 78899999999999999988764332222 111112233321 2488999999999999999876443
No 23
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=87.15 E-value=2.7 Score=41.39 Aligned_cols=108 Identities=20% Similarity=0.172 Sum_probs=58.7
Q ss_pred EEEEEEcCCCccEEEEEEEeCCCCceecccccceEEeecCCccccCCChHHHHHHHHHHHHHHHhhCCCCCCCCccEEEE
Q 048388 70 YAVIFDAGSSGSRVHVYCFDQNLDLVPIGKDLELFVQTKPGLSAYASDPQAAANSLASLLDKAQSVVPQDLRPKTPVKVG 149 (477)
Q Consensus 70 y~vvIDaGSsgsRl~Vy~~~~~~~l~~i~~~~e~~~k~~pGLs~~~~~~~~~~~~l~~ll~~a~~~vp~~~~~~tpi~l~ 149 (477)
|.+-||+||++++..+|. + ..++. .....|+ ..++...+.+..+++.+ +.. ......+.
T Consensus 1 ~~lGIDiGtts~K~vl~d-~--g~il~-------~~~~~~~-----~~~~~~~~~l~~~~~~~----~~~--~~~i~~i~ 59 (248)
T TIGR00241 1 ISLGIDSGSTTTKMVLME-D--GKVIG-------YKWLDTT-----PVIEETARAILEALKEA----GIG--LEPIDKIV 59 (248)
T ss_pred CEEEEEcChhheEEEEEc-C--CEEEE-------EEEecCC-----CCHHHHHHHHHHHHHHc----CCC--hhheeEEE
Confidence 345699999999999995 3 23221 1222332 13444445555554332 111 12234456
Q ss_pred eehhhhcCChhhHHHHHHHHHHHhhccCCcccCCCceEEccCCccchhhHHHHHHhhccCCCCCCceEEEEecCCCceee
Q 048388 150 ATAGLRQLGVDASDRILQAVRDLLKYKSAFKSKPEWVTVLDGSQEGSYQWVTINYLLGNLGKKYSNTVGVVDLGGGSVQM 229 (477)
Q Consensus 150 ATAGmR~l~~~~~~~il~~vr~~l~~~~~f~~~~~~v~IIsG~eEg~y~WvavNyllg~l~~~~~~t~gviDlGGgStQi 229 (477)
.|.-+|.+=. ..+. -..|-.-.=.++.++.+ +.-.+||+||..+.+
T Consensus 60 ~Tg~~~~~v~-~~~~--------------------------~~~ei~~~~~g~~~~~~-------~~~~vidiGgqd~k~ 105 (248)
T TIGR00241 60 ATGYGRHKVG-FADK--------------------------IVTEISCHGKGANYLAP-------EARGVIDIGGQDSKV 105 (248)
T ss_pred EECCCccccc-ccCC--------------------------ceEEhhHHHHHHHHHCC-------CCCEEEEecCCeeEE
Confidence 6666555311 0000 12354555567778764 334699999998888
Q ss_pred EEe
Q 048388 230 AYA 232 (477)
Q Consensus 230 af~ 232 (477)
...
T Consensus 106 i~~ 108 (248)
T TIGR00241 106 IKI 108 (248)
T ss_pred EEE
Confidence 765
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=87.11 E-value=12 Score=38.20 Aligned_cols=18 Identities=39% Similarity=0.636 Sum_probs=15.6
Q ss_pred ceEEEEecCCCceeeEEe
Q 048388 215 NTVGVVDLGGGSVQMAYA 232 (477)
Q Consensus 215 ~t~gviDlGGgStQiaf~ 232 (477)
.+..|+|+|||.|+++..
T Consensus 150 ~~~lVvDiG~gttdvs~v 167 (333)
T TIGR00904 150 TGSMVVDIGGGTTEVAVI 167 (333)
T ss_pred ceEEEEEcCCCeEEEEEE
Confidence 456899999999999976
No 25
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=84.77 E-value=20 Score=38.95 Aligned_cols=143 Identities=22% Similarity=0.356 Sum_probs=75.5
Q ss_pred EEEEEEcCCCccEEEEEEEeC-C----CCc--eecccccceEEee----cCCccccCCChHHHHHHHHHHHHHH--HhhC
Q 048388 70 YAVIFDAGSSGSRVHVYCFDQ-N----LDL--VPIGKDLELFVQT----KPGLSAYASDPQAAANSLASLLDKA--QSVV 136 (477)
Q Consensus 70 y~vvIDaGSsgsRl~Vy~~~~-~----~~l--~~i~~~~e~~~k~----~pGLs~~~~~~~~~~~~l~~ll~~a--~~~v 136 (477)
.-|=||+|+|+|.|.+=+..- + ..+ +.|. +.|..-|- .|=++.-.-|. +.++.+++.- +.-+
T Consensus 4 ~SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I~-dkeViYrS~I~fTPl~~~~~ID~----~al~~iv~~eY~~Agi 78 (473)
T PF06277_consen 4 LSVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEIV-DKEVIYRSPIYFTPLLSQTEIDA----EALKEIVEEEYRKAGI 78 (473)
T ss_pred EEEEEeecCCceeEEEEEeEEEeccCCCccceEEEe-ccEEEecCCccccCCCCCCccCH----HHHHHHHHHHHHHcCC
Confidence 346799999999999877641 1 111 1111 12233221 12122212233 3455554332 2233
Q ss_pred CCCCCCCccEEE-EeehhhhcCChhhHHHHHHHHHHHhhccCCcccC---CCceEEccCCccchhhHHHHHHhhccCCCC
Q 048388 137 PQDLRPKTPVKV-GATAGLRQLGVDASDRILQAVRDLLKYKSAFKSK---PEWVTVLDGSQEGSYQWVTINYLLGNLGKK 212 (477)
Q Consensus 137 p~~~~~~tpi~l-~ATAGmR~l~~~~~~~il~~vr~~l~~~~~f~~~---~~~v~IIsG~eEg~y~WvavNyllg~l~~~ 212 (477)
..+.-..--|.+ +=|| | .+|++++++.+.+..++ |.+- ++-=.||.|.-=|...+- ++
T Consensus 79 ~p~~I~TGAVIITGETA--r---KeNA~~v~~~Ls~~aGD---FVVATAGPdLEsiiAgkGsGA~~~S----------~~ 140 (473)
T PF06277_consen 79 TPEDIDTGAVIITGETA--R---KENAREVLHALSGFAGD---FVVATAGPDLESIIAGKGSGAAALS----------KE 140 (473)
T ss_pred CHHHCccccEEEecchh--h---hhhHHHHHHHHHHhcCC---EEEEccCCCHHHHHhccCccHHHHh----------hh
Confidence 222222222332 3333 3 37999999999998886 7542 223344555444433221 22
Q ss_pred CCceEEEEecCCCceeeEEeecc
Q 048388 213 YSNTVGVVDLGGGSVQMAYAISE 235 (477)
Q Consensus 213 ~~~t~gviDlGGgStQiaf~~~~ 235 (477)
...++.=||+|||-|-+++....
T Consensus 141 ~~~~V~NiDIGGGTtN~avf~~G 163 (473)
T PF06277_consen 141 HHTVVANIDIGGGTTNIAVFDNG 163 (473)
T ss_pred hCCeEEEEEeCCCceeEEEEECC
Confidence 34678899999999999988554
No 26
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=81.88 E-value=11 Score=38.67 Aligned_cols=18 Identities=39% Similarity=0.615 Sum_probs=15.5
Q ss_pred ceEEEEecCCCceeeEEe
Q 048388 215 NTVGVVDLGGGSVQMAYA 232 (477)
Q Consensus 215 ~t~gviDlGGgStQiaf~ 232 (477)
..+.++|+|||.|+++..
T Consensus 147 ~~~lVvDiGggttdvsvv 164 (336)
T PRK13928 147 SGNMVVDIGGGTTDIAVL 164 (336)
T ss_pred CeEEEEEeCCCeEEEEEE
Confidence 457899999999999875
No 27
>PRK13411 molecular chaperone DnaK; Provisional
Probab=81.34 E-value=21 Score=40.44 Aligned_cols=41 Identities=20% Similarity=0.407 Sum_probs=24.9
Q ss_pred ceEEccCCccchhhHHHHHHhhccCCCCCCceEEEEecCCCceeeEEe
Q 048388 185 WVTVLDGSQEGSYQWVTINYLLGNLGKKYSNTVGVVDLGGGSVQMAYA 232 (477)
Q Consensus 185 ~v~IIsG~eEg~y~WvavNyllg~l~~~~~~t~gviDlGGgStQiaf~ 232 (477)
-+++|+-..=|. +.|.+... ....++.|+|+|||++.++..
T Consensus 163 v~~li~EPtAAA-----l~y~~~~~--~~~~~vlV~DlGgGT~dvsi~ 203 (653)
T PRK13411 163 VLRIINEPTAAA-----LAYGLDKQ--DQEQLILVFDLGGGTFDVSIL 203 (653)
T ss_pred eEEEecchHHHH-----HHhccccc--CCCCEEEEEEcCCCeEEEEEE
Confidence 356666543333 33443321 123568999999999999754
No 28
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=80.51 E-value=18 Score=37.41 Aligned_cols=20 Identities=30% Similarity=0.280 Sum_probs=16.5
Q ss_pred ceEEEEecCCCceeeEEeec
Q 048388 215 NTVGVVDLGGGSVQMAYAIS 234 (477)
Q Consensus 215 ~t~gviDlGGgStQiaf~~~ 234 (477)
.+..|||+|+++|.|+-..+
T Consensus 143 ~~~lVVDiG~~~t~i~pv~~ 162 (371)
T cd00012 143 TTGLVVDSGDGVTHVVPVYD 162 (371)
T ss_pred CeEEEEECCCCeeEEEEEEC
Confidence 46789999999999986543
No 29
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=79.72 E-value=27 Score=39.21 Aligned_cols=56 Identities=23% Similarity=0.410 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHhhccCCcccCCCceEEccCCccchhhHHHHHHhhccCCCCCCceEEEEecCCCceeeEEe
Q 048388 160 DASDRILQAVRDLLKYKSAFKSKPEWVTVLDGSQEGSYQWVTINYLLGNLGKKYSNTVGVVDLGGGSVQMAYA 232 (477)
Q Consensus 160 ~~~~~il~~vr~~l~~~~~f~~~~~~v~IIsG~eEg~y~WvavNyllg~l~~~~~~t~gviDlGGgStQiaf~ 232 (477)
.+++++.++.+. .+| +-+++|+-..=|.++ |.+.. ....++.|+|+|||++.++..
T Consensus 155 ~qR~a~~~Aa~~-----AGl----~v~~li~EPtAAAla-----y~~~~---~~~~~vlV~DlGGGT~DvSi~ 210 (595)
T PRK01433 155 AARGEVMLAAKI-----AGF----EVLRLIAEPTAAAYA-----YGLNK---NQKGCYLVYDLGGGTFDVSIL 210 (595)
T ss_pred HHHHHHHHHHHH-----cCC----CEEEEecCcHHHHHH-----Hhccc---CCCCEEEEEECCCCcEEEEEE
Confidence 455555555443 234 146777766544443 33321 123568899999999999865
No 30
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=78.98 E-value=38 Score=35.24 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=16.5
Q ss_pred EEEEecCCCceeeEEeecc
Q 048388 217 VGVVDLGGGSVQMAYAISE 235 (477)
Q Consensus 217 ~gviDlGGgStQiaf~~~~ 235 (477)
+.++|||..|+++.+..+.
T Consensus 195 vav~~Igat~s~l~vi~~g 213 (354)
T COG4972 195 VAVFDIGATSSELLVIQDG 213 (354)
T ss_pred heeeeecccceEEEEEECC
Confidence 6799999999999988654
No 31
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=78.47 E-value=14 Score=38.33 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=16.5
Q ss_pred ceEEEEecCCCceeeEEeec
Q 048388 215 NTVGVVDLGGGSVQMAYAIS 234 (477)
Q Consensus 215 ~t~gviDlGGgStQiaf~~~ 234 (477)
.+..|||+|.++|.|+-..+
T Consensus 143 ~~~lVVDiG~~~t~v~pv~~ 162 (373)
T smart00268 143 TTGLVIDSGDGVTHVVPVVD 162 (373)
T ss_pred CEEEEEecCCCcceEEEEEC
Confidence 56789999999999996543
No 32
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=77.25 E-value=8.7 Score=41.87 Aligned_cols=63 Identities=16% Similarity=0.254 Sum_probs=36.2
Q ss_pred eEEEEEEcCCCccEEEEEEEeCCCCceecccccceEEeecCCccccCCChHHHHHHHHHHHHHHHhh
Q 048388 69 SYAVIFDAGSSGSRVHVYCFDQNLDLVPIGKDLELFVQTKPGLSAYASDPQAAANSLASLLDKAQSV 135 (477)
Q Consensus 69 ~y~vvIDaGSsgsRl~Vy~~~~~~~l~~i~~~~e~~~k~~pGLs~~~~~~~~~~~~l~~ll~~a~~~ 135 (477)
.|.+.||+|+|++|..||.. +..++.............||- ...+|+...+.+..+++.+.+.
T Consensus 2 ~~~lgiDiGTts~Ka~l~d~--~G~~v~~~~~~~~~~~~~~g~--~eqd~~~~~~~~~~~l~~~~~~ 64 (504)
T PTZ00294 2 KYIGSIDQGTTSTRFIIFDE--KGNVVSSHQIPHEQITPHPGW--LEHDPEEILRNVYKCMNEAIKK 64 (504)
T ss_pred cEEEEEecCCCceEEEEECC--CCCEEEEEEEeecccCCCCCe--EeeCHHHHHHHHHHHHHHHHHH
Confidence 47788999999999999963 334433211100011223442 2347877776666666665443
No 33
>PRK10331 L-fuculokinase; Provisional
Probab=76.96 E-value=10 Score=40.93 Aligned_cols=60 Identities=12% Similarity=0.041 Sum_probs=35.5
Q ss_pred EEEEEEcCCCccEEEEEEEeCCCCceecccccceE---EeecCCccccCCChHHHHHHHHHHHHHHHh
Q 048388 70 YAVIFDAGSSGSRVHVYCFDQNLDLVPIGKDLELF---VQTKPGLSAYASDPQAAANSLASLLDKAQS 134 (477)
Q Consensus 70 y~vvIDaGSsgsRl~Vy~~~~~~~l~~i~~~~e~~---~k~~pGLs~~~~~~~~~~~~l~~ll~~a~~ 134 (477)
|.+.||+|+|++|+.+|.-+ ..++..... +.. ....|| ....+|++..+.+..+++.+.+
T Consensus 3 ~~lgID~GTt~~Ka~l~d~~--G~~~~~~~~-~~~~~~~~~~~g--~~eqd~~~~w~~~~~~~~~~~~ 65 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDRQ--GKIVARAST-PNASDIAAENSD--WHQWSLDAILQRFADCCRQINS 65 (470)
T ss_pred eEEEEecCCCceEEEEEcCC--CcEEEEEec-ccccccCCCCCC--CcccCHHHHHHHHHHHHHHHHH
Confidence 78889999999999999633 344332111 110 111233 2245788777777666666544
No 34
>PLN02295 glycerol kinase
Probab=76.86 E-value=8.3 Score=42.14 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=36.5
Q ss_pred EEEEEEcCCCccEEEEEEEeCCCCceecccccceEEeecCCccccCCChHHHHHHHHHHHHHHHhhC
Q 048388 70 YAVIFDAGSSGSRVHVYCFDQNLDLVPIGKDLELFVQTKPGLSAYASDPQAAANSLASLLDKAQSVV 136 (477)
Q Consensus 70 y~vvIDaGSsgsRl~Vy~~~~~~~l~~i~~~~e~~~k~~pGLs~~~~~~~~~~~~l~~ll~~a~~~v 136 (477)
|.+.||+|+|++|..||. .+..++...........-.||.. ..+|+...+.+..+++.+.+..
T Consensus 1 ~vlgID~GTts~Ka~l~d--~~G~~~~~~~~~~~~~~~~~G~~--Eqdp~~~w~~~~~~i~~~~~~~ 63 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYD--RDARPVASHQVEFTQIYPQAGWV--EHDPMEILESVLTCIAKALEKA 63 (512)
T ss_pred CEEEEecCCCceEEEEEC--CCCCEEEEEeecccccCCCCCcE--eeCHHHHHHHHHHHHHHHHHHc
Confidence 456799999999999996 33344322111000111234433 3578887777777766665443
No 35
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=76.46 E-value=8 Score=42.23 Aligned_cols=65 Identities=15% Similarity=0.242 Sum_probs=37.4
Q ss_pred ceEEEEEEcCCCccEEEEEEEeCCCCceecccccceEEeecCCccccCCChHHHHHHHHHHHHHHHhh
Q 048388 68 KSYAVIFDAGSSGSRVHVYCFDQNLDLVPIGKDLELFVQTKPGLSAYASDPQAAANSLASLLDKAQSV 135 (477)
Q Consensus 68 ~~y~vvIDaGSsgsRl~Vy~~~~~~~l~~i~~~~e~~~k~~pGLs~~~~~~~~~~~~l~~ll~~a~~~ 135 (477)
+.|.+.||+|+|++|..+|.-+. ..++......-....-.||-+ ..+|+...+.+...+..+.+.
T Consensus 3 ~~~~lgIDiGTt~~Kavl~d~~~-~~~~~~~~~~~~~~~~~~g~~--e~d~~~~w~~~~~ai~~l~~~ 67 (502)
T COG1070 3 MKYVLGIDIGTTSVKAVLFDEDG-GEVVATARFENPVSTPQPGWA--EQDPDELWQAILEALRQLLEE 67 (502)
T ss_pred ccEEEEEEcCCCcEEEEEEeCCC-CeEEEEeeccccccCCCCCCc--ccCHHHHHHHHHHHHHHHHHh
Confidence 56889999999999999997553 222222110000111233322 347887766666666655554
No 36
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=75.71 E-value=7.3 Score=39.81 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=40.2
Q ss_pred CceEEEEEEcCCCccEEEEEEEeCCCCceecccccceEEeecCCccccCCCh-HHHHHHHHHHHHHHHh
Q 048388 67 SKSYAVIFDAGSSGSRVHVYCFDQNLDLVPIGKDLELFVQTKPGLSAYASDP-QAAANSLASLLDKAQS 134 (477)
Q Consensus 67 ~~~y~vvIDaGSsgsRl~Vy~~~~~~~l~~i~~~~e~~~k~~pGLs~~~~~~-~~~~~~l~~ll~~a~~ 134 (477)
++.|.+-||.|+|+||..|+.- +..++ -+-+-|=++|...+ +.+.+.++..+..|..
T Consensus 3 ~~~~~lGVDGGGTkt~a~l~~~--~g~vl---------g~g~sGpAN~~~~~~e~A~~ni~~ai~~A~~ 60 (301)
T COG2971 3 PMPYFLGVDGGGTKTRAVLADE--DGNVL---------GRGKSGPANIQLVGKEEAVRNIKDAIREALD 60 (301)
T ss_pred CccEEEEEccCCcceEEEEEcC--CCcEE---------EEeccCCceecccchHHHHHHHHHHHHHHHH
Confidence 5679999999999999999972 22332 22223336777777 7787888877777764
No 37
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=75.41 E-value=6.2 Score=42.70 Aligned_cols=61 Identities=30% Similarity=0.492 Sum_probs=41.5
Q ss_pred ceEEEEEEcCCCccEEEEEEEeCCCCceecccccceEEe--ecCCccccCCChHHHHHHHHHHHHHHHh
Q 048388 68 KSYAVIFDAGSSGSRVHVYCFDQNLDLVPIGKDLELFVQ--TKPGLSAYASDPQAAANSLASLLDKAQS 134 (477)
Q Consensus 68 ~~y~vvIDaGSsgsRl~Vy~~~~~~~l~~i~~~~e~~~k--~~pGLs~~~~~~~~~~~~l~~ll~~a~~ 134 (477)
.+|++.||.|+|+||..||. .+..++.+... .+.+ -+||-- ..||.++.++....+..|..
T Consensus 4 ~~yIlAiDqGTTssRaivfd--~~g~iva~~q~--e~~Q~yP~~GWV--EhDp~eIw~~~~~~l~~a~~ 66 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFD--EDGNIVAIAQR--EFTQIYPQPGWV--EHDPLEIWASVRSVLKEALA 66 (499)
T ss_pred ccEEEEEecCCcceeEEEEC--CCCCchhhhhh--hhhhhCCCCCcc--ccCHHHHHHHHHHHHHHHHH
Confidence 57999999999999999984 44445544322 2223 344543 36899998887777777644
No 38
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=73.53 E-value=51 Score=33.91 Aligned_cols=101 Identities=20% Similarity=0.204 Sum_probs=46.7
Q ss_pred EEcCCCccEEEEEEEeCCCCceecccccceEEeecCCcccc--CCChHHHHHHHHHHHHHHHhhCCCCCCCCccEEEEee
Q 048388 74 FDAGSSGSRVHVYCFDQNLDLVPIGKDLELFVQTKPGLSAY--ASDPQAAANSLASLLDKAQSVVPQDLRPKTPVKVGAT 151 (477)
Q Consensus 74 IDaGSsgsRl~Vy~~~~~~~l~~i~~~~e~~~k~~pGLs~~--~~~~~~~~~~l~~ll~~a~~~vp~~~~~~tpi~l~AT 151 (477)
||+||+++++.--+...+ .+ .+.. -....+.+|.-.- ..+++..++.|..+++...-.- +..-+-+-++
T Consensus 2 iDiG~~siK~v~l~~~~~-~~-~l~~--~~~~~~p~~~i~~g~i~d~~~l~~~L~~~~~~~~~~~-----k~v~~aip~~ 72 (340)
T PF11104_consen 2 IDIGSSSIKAVELSKKGN-RF-QLEA--FASIPLPPGAISDGEIVDPEALAEALKELLKENKIKG-----KKVVLAIPGS 72 (340)
T ss_dssp EEE-SSEEEEEEEETTTT----EEEE--EEEEE--TTSEETTEES-HHHHHHHHHHHHHHHT---------EEEEEE-GG
T ss_pred eecCCCeEEEEEEEEcCC-cc-EEEE--EEEEECCCCCccCCCcCCHHHHHHHHHHHHHHcCCCC-----CeEEEEeCCC
Confidence 899999999988765332 21 2111 0223344554222 2478888899998887764321 0111111111
Q ss_pred hh-hhc--CChh-hHHHHHHHHHHHhhccCCcccCC
Q 048388 152 AG-LRQ--LGVD-ASDRILQAVRDLLKYKSAFKSKP 183 (477)
Q Consensus 152 AG-mR~--l~~~-~~~~il~~vr~~l~~~~~f~~~~ 183 (477)
.. +|. +|.. ..+++-+.|+-.+.+..||.+++
T Consensus 73 ~vi~r~i~lP~~m~~~el~~~I~~Ea~~~iP~~~~e 108 (340)
T PF11104_consen 73 SVIIRNIRLPAVMPEKELEEAIRWEAEQYIPFPLEE 108 (340)
T ss_dssp G-EEEEEEEE----HHHHHHHHHHHHGGG-SS----
T ss_pred cEEEEEEecCCCCCHHHHHHHHHHHHHhhCCCChhH
Confidence 11 344 3554 66777777777776655665443
No 39
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=71.99 E-value=13 Score=40.06 Aligned_cols=61 Identities=15% Similarity=0.085 Sum_probs=36.1
Q ss_pred EEEEEEcCCCccEEEEEEEeCCCCceecccc-cce-EEeecCCccccCCChHHHHHHHHHHHHHHHh
Q 048388 70 YAVIFDAGSSGSRVHVYCFDQNLDLVPIGKD-LEL-FVQTKPGLSAYASDPQAAANSLASLLDKAQS 134 (477)
Q Consensus 70 y~vvIDaGSsgsRl~Vy~~~~~~~l~~i~~~-~e~-~~k~~pGLs~~~~~~~~~~~~l~~ll~~a~~ 134 (477)
|.+.||+|+|++|+.||..+ ..++..... .+. .....||.. ..+|+...+.+...++.+..
T Consensus 2 ~ilgiD~GTss~K~~l~d~~--g~~va~~~~~~~~~~~~~~~g~~--eqd~~~~w~~~~~~~~~l~~ 64 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQ--GKIVASASTPNATKQAIENNDYH--IWDLEAIWQKLADCCQQINS 64 (465)
T ss_pred eEEEEecCCCcEEEEEEcCC--CCEEEEEecccccCCCCCCCCce--eeCHHHHHHHHHHHHHHHHh
Confidence 67789999999999999743 233322111 000 011234422 34788877777777776654
No 40
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=71.54 E-value=2.5 Score=36.95 Aligned_cols=59 Identities=17% Similarity=0.284 Sum_probs=30.9
Q ss_pred EEEEEcCCCccEEEEEEEeCCCC--ceecccccceEEeecCCccc-cCCChHHHHHHHHHHHHHHHhh
Q 048388 71 AVIFDAGSSGSRVHVYCFDQNLD--LVPIGKDLELFVQTKPGLSA-YASDPQAAANSLASLLDKAQSV 135 (477)
Q Consensus 71 ~vvIDaGSsgsRl~Vy~~~~~~~--l~~i~~~~e~~~k~~pGLs~-~~~~~~~~~~~l~~ll~~a~~~ 135 (477)
.++||+||+.|++.||+-..... ++.++ ..-..|+.. .-.|.+++.+.|+.-++.|++.
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g------~~~s~gi~~g~Itd~~~i~~~i~~a~~~AE~~ 62 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVG------EVPSKGIKGGHITDIEDISKAIKIAIEEAERL 62 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------------HHHHH--HHHHHHHT--HHHHHHH
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEe------cccccccCCCEEEEHHHHHHHHHHHHHHHHHH
Confidence 47899999999999998643211 11111 111123332 2236788888888888888876
No 41
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=71.22 E-value=15 Score=40.23 Aligned_cols=61 Identities=20% Similarity=0.291 Sum_probs=34.7
Q ss_pred ceEEEEEEcCCCccEEEEEEEeCCCCceecccccceEE---eecCCccccCCChHHHHHHHHHHHHHHH
Q 048388 68 KSYAVIFDAGSSGSRVHVYCFDQNLDLVPIGKDLELFV---QTKPGLSAYASDPQAAANSLASLLDKAQ 133 (477)
Q Consensus 68 ~~y~vvIDaGSsgsRl~Vy~~~~~~~l~~i~~~~e~~~---k~~pGLs~~~~~~~~~~~~l~~ll~~a~ 133 (477)
++|.+.||+|+|++|+.+|..+ ..++..... +... ...||- ...+|+...+.+...+..+.
T Consensus 2 m~~~lgID~GTts~Ka~l~d~~--G~~l~~~~~-~~~~~~~~~~~g~--~Eqd~~~~w~~~~~~l~~~~ 65 (520)
T PRK10939 2 MSYLMALDAGTGSIRAVIFDLN--GNQIAVGQA-EWRHLAVPDVPGS--MEFDLEKNWQLACQCIRQAL 65 (520)
T ss_pred CcEEEEEecCCCceEEEEECCC--CCEEEEEec-cccccCCCCCCCC--eeECHHHHHHHHHHHHHHHH
Confidence 3588899999999999999743 233332110 1100 012332 23478776666665555544
No 42
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=70.55 E-value=22 Score=36.33 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=16.7
Q ss_pred eEEEEEEcCCCccEEEEEE
Q 048388 69 SYAVIFDAGSSGSRVHVYC 87 (477)
Q Consensus 69 ~y~vvIDaGSsgsRl~Vy~ 87 (477)
.|.+=||+||+++.+.|.+
T Consensus 32 m~~~GIDiGStt~K~Vlld 50 (293)
T TIGR03192 32 IITCGIDVGSVSSQAVLVC 50 (293)
T ss_pred cEEEEEEeCchhEEEEEEe
Confidence 4667899999999999985
No 43
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=70.06 E-value=8.8 Score=38.02 Aligned_cols=72 Identities=13% Similarity=0.075 Sum_probs=40.1
Q ss_pred EEEcCCCccEEEEEEEeCCCCceecccccceEEeecCCccccC-CChHHHHHHHHHHHHHHHhhCCCCCCCCccEEEEee
Q 048388 73 IFDAGSSGSRVHVYCFDQNLDLVPIGKDLELFVQTKPGLSAYA-SDPQAAANSLASLLDKAQSVVPQDLRPKTPVKVGAT 151 (477)
Q Consensus 73 vIDaGSsgsRl~Vy~~~~~~~l~~i~~~~e~~~k~~pGLs~~~-~~~~~~~~~l~~ll~~a~~~vp~~~~~~tpi~l~AT 151 (477)
=||+|+|.||+.++.- +..++. ..+..+ +++. .+.+.+.+.|...++.+.+..+...... +....+.
T Consensus 2 GIDgGgTkt~~vl~d~--~g~il~-------~~~~~~--~n~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i-~~~~~g~ 69 (271)
T PF01869_consen 2 GIDGGGTKTKAVLVDE--NGNILG-------RGKGGG--ANYNSVGFEEAMENIKEAIEEALSQAGLSPDDI-AAICIGA 69 (271)
T ss_dssp EEEECSSEEEEEEEET--TSEEEE-------EEEES---TTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCC-CEEEEEE
T ss_pred EEeeChheeeeEEEeC--CCCEEE-------EEEeCC--CCCCCCCcchhhhHHHHHHHHHHHHcCCCcccc-ceeeeeE
Confidence 4899999999999863 222221 111222 2222 2455666778888888777665443322 3333455
Q ss_pred hhhhc
Q 048388 152 AGLRQ 156 (477)
Q Consensus 152 AGmR~ 156 (477)
+|+=.
T Consensus 70 aG~~~ 74 (271)
T PF01869_consen 70 AGYGR 74 (271)
T ss_dssp EEEEE
T ss_pred eeecC
Confidence 55444
No 44
>PRK13410 molecular chaperone DnaK; Provisional
Probab=66.14 E-value=1.1e+02 Score=34.89 Aligned_cols=93 Identities=25% Similarity=0.293 Sum_probs=55.9
Q ss_pred ChHHH-HHHHHHHHHHHHhhCCCCCCCCccEEEEeehhhhcCChhhHHHHHHHHHHHhhccCCcccCCCceEEccCCccc
Q 048388 117 DPQAA-ANSLASLLDKAQSVVPQDLRPKTPVKVGATAGLRQLGVDASDRILQAVRDLLKYKSAFKSKPEWVTVLDGSQEG 195 (477)
Q Consensus 117 ~~~~~-~~~l~~ll~~a~~~vp~~~~~~tpi~l~ATAGmR~l~~~~~~~il~~vr~~l~~~~~f~~~~~~v~IIsG~eEg 195 (477)
.|+++ +..|..|.+.|...... ..+.+++---|..- ..+++++.++.+. .+|. -+++|+...=|
T Consensus 111 speel~a~iL~~lk~~ae~~lg~---~v~~~VITVPa~f~---~~qR~a~~~Aa~~-----AGl~----v~~li~EPtAA 175 (668)
T PRK13410 111 APEELSAMILRKLADDASRYLGE---PVTGAVITVPAYFN---DSQRQATRDAGRI-----AGLE----VERILNEPTAA 175 (668)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCC---CcceEEEEECCCCC---HHHHHHHHHHHHH-----cCCC----eEEEecchHHH
Confidence 45554 56777777777776532 22334443333332 3567777777654 3452 46787766554
Q ss_pred hhhHHHHHHhhccCCCCCCceEEEEecCCCceeeEEe
Q 048388 196 SYQWVTINYLLGNLGKKYSNTVGVVDLGGGSVQMAYA 232 (477)
Q Consensus 196 ~y~WvavNyllg~l~~~~~~t~gviDlGGgStQiaf~ 232 (477)
.+ .|.+.. ....++.|+|||||++.++..
T Consensus 176 Al-----ayg~~~---~~~~~vlV~DlGgGT~Dvsv~ 204 (668)
T PRK13410 176 AL-----AYGLDR---SSSQTVLVFDLGGGTFDVSLL 204 (668)
T ss_pred HH-----Hhcccc---CCCCEEEEEECCCCeEEEEEE
Confidence 43 344322 234678999999999999865
No 45
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=66.04 E-value=15 Score=34.44 Aligned_cols=62 Identities=23% Similarity=0.272 Sum_probs=41.8
Q ss_pred EEEEcCCCccEEEEEEEeCCCCceecccccceEEee-cCCcccc-CCChHHHHHHHHHHHHHHHhhCCC
Q 048388 72 VIFDAGSSGSRVHVYCFDQNLDLVPIGKDLELFVQT-KPGLSAY-ASDPQAAANSLASLLDKAQSVVPQ 138 (477)
Q Consensus 72 vvIDaGSsgsRl~Vy~~~~~~~l~~i~~~~e~~~k~-~pGLs~~-~~~~~~~~~~l~~ll~~a~~~vp~ 138 (477)
+.+|+||+.+++.+-+...+..+.-++ +... ..|+..- -.|.+.+.+.++.+++.|++..+.
T Consensus 2 ~~lDIGs~~ik~vv~~~~~~~~~~i~g-----~~~~~s~gi~~G~I~d~~~~~~~I~~ai~~ae~~~~~ 65 (187)
T smart00842 2 VGLDIGTSKIKALVAEVDEDGEINVIG-----VGEVPSRGIRKGVIVDIEAAARAIREAVEEAERMAGV 65 (187)
T ss_pred EEEEeccceEEEEEEEEcCCCCEEEEE-----EEEecCCCccCcEEECHHHHHHHHHHHHHHHHHHhCC
Confidence 579999999999999887543322211 1111 2233321 237899999999999999887653
No 46
>PRK04123 ribulokinase; Provisional
Probab=65.11 E-value=26 Score=38.63 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=17.8
Q ss_pred eEEEEEEcCCCccEEEEEEE
Q 048388 69 SYAVIFDAGSSGSRVHVYCF 88 (477)
Q Consensus 69 ~y~vvIDaGSsgsRl~Vy~~ 88 (477)
+|.+.||+|+|++|+.||..
T Consensus 3 ~~~lgiD~GTts~Ka~l~d~ 22 (548)
T PRK04123 3 AYVIGLDFGTDSVRALLVDC 22 (548)
T ss_pred cEEEEEecCCCceEEEEEEC
Confidence 47788999999999999975
No 47
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=64.41 E-value=48 Score=35.08 Aligned_cols=112 Identities=21% Similarity=0.235 Sum_probs=58.8
Q ss_pred CceEEEEEEcCCCccEEEEEEEeCCCCceecccccceEEeecCCccccCCChHHHHHHHHHHHHHHHhhCCCCCCCCccE
Q 048388 67 SKSYAVIFDAGSSGSRVHVYCFDQNLDLVPIGKDLELFVQTKPGLSAYASDPQAAANSLASLLDKAQSVVPQDLRPKTPV 146 (477)
Q Consensus 67 ~~~y~vvIDaGSsgsRl~Vy~~~~~~~l~~i~~~~e~~~k~~pGLs~~~~~~~~~~~~l~~ll~~a~~~vp~~~~~~tpi 146 (477)
...+.+=||+|||+|.+.+.+-+. . |.. .+....+| +|. +.+.+...++++.... ..-.
T Consensus 133 ~~~~~LGID~GSTtTK~VLm~d~~--~---I~~---~~~~~t~g------~p~-~~~~l~~~le~l~~~~------~~I~ 191 (396)
T COG1924 133 QGMYTLGIDSGSTTTKAVLMEDGK--E---ILY---GFYVSTKG------RPI-AEKALKEALEELGEKL------EEIL 191 (396)
T ss_pred cCcEEEEEecCCcceeEEEEeCCC--e---EEE---EEEEcCCC------Chh-HHHHHHHHHHHcccCh------heee
Confidence 445667899999999999975221 1 111 22333443 333 4455555555443321 2234
Q ss_pred EEEeehhhhcCChhhHHHHHHHHHHHhhccCCcccCCCceEEccCCccchhhHHHHHHhhccCCCCCCceEEEEecCCCc
Q 048388 147 KVGATAGLRQLGVDASDRILQAVRDLLKYKSAFKSKPEWVTVLDGSQEGSYQWVTINYLLGNLGKKYSNTVGVVDLGGGS 226 (477)
Q Consensus 147 ~l~ATAGmR~l~~~~~~~il~~vr~~l~~~~~f~~~~~~v~IIsG~eEg~y~WvavNyllg~l~~~~~~t~gviDlGGgS 226 (477)
.+.+|.==|.+ +...+. . + -+..|-.--..|+.|+.. +.-.|||+||-=
T Consensus 192 ~~~~TGYGR~~-----------v~~~~~----a--D-------~~~~Ei~ah~kgA~~f~p-------~~dtIiDIGGQD 240 (396)
T COG1924 192 GLGVTGYGRNL-----------VGAALG----A--D-------KVVVEISAHAKGARYFAP-------DVDTVIDIGGQD 240 (396)
T ss_pred eeeeecccHHH-----------hhhhhc----C--C-------cceeeeehhHHHHHHhCC-------CCcEEEEecCcc
Confidence 45556544442 111111 1 0 134455556788888853 223799999954
Q ss_pred eeeE
Q 048388 227 VQMA 230 (477)
Q Consensus 227 tQia 230 (477)
+-+.
T Consensus 241 ~K~i 244 (396)
T COG1924 241 SKVI 244 (396)
T ss_pred eeEE
Confidence 4433
No 48
>PRK15027 xylulokinase; Provisional
Probab=64.37 E-value=21 Score=38.61 Aligned_cols=62 Identities=15% Similarity=0.126 Sum_probs=36.5
Q ss_pred EEEEEcCCCccEEEEEEEeCCCCceecccccceEEeecCCccccCCChHHHHHHHHHHHHHHHhhC
Q 048388 71 AVIFDAGSSGSRVHVYCFDQNLDLVPIGKDLELFVQTKPGLSAYASDPQAAANSLASLLDKAQSVV 136 (477)
Q Consensus 71 ~vvIDaGSsgsRl~Vy~~~~~~~l~~i~~~~e~~~k~~pGLs~~~~~~~~~~~~l~~ll~~a~~~v 136 (477)
.+.||+|+|++|..||. .+..++......-......|| ....+|++..+.+..+++.+.+..
T Consensus 2 ~lgID~GTts~Ka~l~d--~~G~vva~~~~~~~~~~~~~g--~~eqd~~~~w~~~~~~~~~l~~~~ 63 (484)
T PRK15027 2 YIGIDLGTSGVKVILLN--EQGEVVASQTEKLTVSRPHPL--WSEQDPEQWWQATDRAMKALGDQH 63 (484)
T ss_pred EEEEEecccceEEEEEc--CCCCEEEEEeecccccCCCCC--ccccCHHHHHHHHHHHHHHHHHhC
Confidence 46799999999999996 333444321110001112233 334578877777777777765543
No 49
>CHL00094 dnaK heat shock protein 70
Probab=64.34 E-value=1.2e+02 Score=34.02 Aligned_cols=92 Identities=21% Similarity=0.308 Sum_probs=54.7
Q ss_pred hHHH-HHHHHHHHHHHHhhCCCCCCCCccEEEEeehhhhcCChhhHHHHHHHHHHHhhccCCcccCCCceEEccCCccch
Q 048388 118 PQAA-ANSLASLLDKAQSVVPQDLRPKTPVKVGATAGLRQLGVDASDRILQAVRDLLKYKSAFKSKPEWVTVLDGSQEGS 196 (477)
Q Consensus 118 ~~~~-~~~l~~ll~~a~~~vp~~~~~~tpi~l~ATAGmR~l~~~~~~~il~~vr~~l~~~~~f~~~~~~v~IIsG~eEg~ 196 (477)
|+++ +..|..|.+.|+..... ..+.+.+---|.. ...+++.+.++.+. .+|. -+++|+...=|.
T Consensus 112 ~eei~a~iL~~l~~~ae~~lg~---~v~~~VItVPa~f---~~~qR~a~~~Aa~~-----AGl~----v~~li~EptAAA 176 (621)
T CHL00094 112 PEEISAQVLRKLVEDASKYLGE---TVTQAVITVPAYF---NDSQRQATKDAGKI-----AGLE----VLRIINEPTAAS 176 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC---CCCeEEEEECCCC---CHHHHHHHHHHHHH-----cCCc----eEEEeccHHHHH
Confidence 4544 56778888888776532 1233444333333 24567777776654 3452 467777654443
Q ss_pred hhHHHHHHhhccCCCCCCceEEEEecCCCceeeEEe
Q 048388 197 YQWVTINYLLGNLGKKYSNTVGVVDLGGGSVQMAYA 232 (477)
Q Consensus 197 y~WvavNyllg~l~~~~~~t~gviDlGGgStQiaf~ 232 (477)
+ .|.+.. ....++.|+|+|||++.++..
T Consensus 177 l-----ay~~~~---~~~~~vlV~DlGgGT~DvSv~ 204 (621)
T CHL00094 177 L-----AYGLDK---KNNETILVFDLGGGTFDVSIL 204 (621)
T ss_pred H-----Hhcccc---CCCCEEEEEEcCCCeEEEEEE
Confidence 3 344321 223578999999999999865
No 50
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=63.69 E-value=1.8e+02 Score=29.70 Aligned_cols=59 Identities=20% Similarity=0.211 Sum_probs=34.1
Q ss_pred EEEEEEcCCCccEEEEEEEeCCCCceecccccceEEeecCCc-cc-cCCChHHHHHHHHHHHHHH
Q 048388 70 YAVIFDAGSSGSRVHVYCFDQNLDLVPIGKDLELFVQTKPGL-SA-YASDPQAAANSLASLLDKA 132 (477)
Q Consensus 70 y~vvIDaGSsgsRl~Vy~~~~~~~l~~i~~~~e~~~k~~pGL-s~-~~~~~~~~~~~l~~ll~~a 132 (477)
..+-||+||++.|+.+.+...+ .+ .+.. . ....+.++. .. ...+++...+.|..+++..
T Consensus 4 ~~vgiDIg~~~Ik~v~~~~~~~-~~-~v~~-~-~~~~~p~~~i~~g~i~d~~~~~~~l~~~~~~~ 64 (348)
T TIGR01175 4 LLVGIDIGSTSVKVAQLKRSGD-RY-KLEH-Y-AVEPLPAGIFTEGHIVEYQAVAEALKELLSEL 64 (348)
T ss_pred cEEEEEeccCeEEEEEEEecCC-ce-EEEE-E-EEEECCCCcccCCCccCHHHHHHHHHHHHHHc
Confidence 5678999999999999875432 22 2111 0 112232332 21 1236777788888877653
No 51
>PTZ00281 actin; Provisional
Probab=63.47 E-value=60 Score=33.98 Aligned_cols=19 Identities=26% Similarity=0.181 Sum_probs=15.5
Q ss_pred ceEEEEecCCCceeeEEee
Q 048388 215 NTVGVVDLGGGSVQMAYAI 233 (477)
Q Consensus 215 ~t~gviDlGGgStQiaf~~ 233 (477)
.|..|||+|-++|+++=..
T Consensus 149 ~tglVVDiG~~~t~v~PV~ 167 (376)
T PTZ00281 149 TTGIVMDSGDGVSHTVPIY 167 (376)
T ss_pred ceEEEEECCCceEEEEEEE
Confidence 4677999999999998443
No 52
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=62.63 E-value=42 Score=37.61 Aligned_cols=93 Identities=18% Similarity=0.239 Sum_probs=56.2
Q ss_pred ChHHH-HHHHHHHHHHHHhhCCCCCCCCccEEEEeehhhhcCChhhHHHHHHHHHHHhhccCCcccCCCceEEccCCccc
Q 048388 117 DPQAA-ANSLASLLDKAQSVVPQDLRPKTPVKVGATAGLRQLGVDASDRILQAVRDLLKYKSAFKSKPEWVTVLDGSQEG 195 (477)
Q Consensus 117 ~~~~~-~~~l~~ll~~a~~~vp~~~~~~tpi~l~ATAGmR~l~~~~~~~il~~vr~~l~~~~~f~~~~~~v~IIsG~eEg 195 (477)
.|+++ +..|..|.+.|.+..... .+.+.+---|..- ..+++++.++++. .+|. -+++|+...=|
T Consensus 105 ~p~ei~a~iL~~lk~~a~~~lg~~---v~~~VItVPa~f~---~~qR~a~~~Aa~~-----AGl~----v~~li~EPtAA 169 (599)
T TIGR01991 105 TPVEVSAEILKKLKQRAEESLGGD---LVGAVITVPAYFD---DAQRQATKDAARL-----AGLN----VLRLLNEPTAA 169 (599)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCC---cceEEEEECCCCC---HHHHHHHHHHHHH-----cCCC----ceEEecCHHHH
Confidence 45554 567777878787765422 2334444333332 3567777777665 3452 46777766555
Q ss_pred hhhHHHHHHhhccCCCCCCceEEEEecCCCceeeEEe
Q 048388 196 SYQWVTINYLLGNLGKKYSNTVGVVDLGGGSVQMAYA 232 (477)
Q Consensus 196 ~y~WvavNyllg~l~~~~~~t~gviDlGGgStQiaf~ 232 (477)
.++| .+.. ....++.|+|+|||++.++..
T Consensus 170 Alay-----~~~~---~~~~~vlV~DlGgGT~DvSi~ 198 (599)
T TIGR01991 170 AVAY-----GLDK---ASEGIYAVYDLGGGTFDVSIL 198 (599)
T ss_pred HHHH-----hhcc---CCCCEEEEEEcCCCeEEEEEE
Confidence 4433 3322 124578999999999999865
No 53
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=61.95 E-value=22 Score=39.30 Aligned_cols=93 Identities=20% Similarity=0.277 Sum_probs=54.1
Q ss_pred hHHH-HHHHHHHHHHHHhhCCCCCCCCccEEEEeehhhhcCChhhHHHHHHHHHHHhhccCCcccCCCceEEccCCccch
Q 048388 118 PQAA-ANSLASLLDKAQSVVPQDLRPKTPVKVGATAGLRQLGVDASDRILQAVRDLLKYKSAFKSKPEWVTVLDGSQEGS 196 (477)
Q Consensus 118 ~~~~-~~~l~~ll~~a~~~vp~~~~~~tpi~l~ATAGmR~l~~~~~~~il~~vr~~l~~~~~f~~~~~~v~IIsG~eEg~ 196 (477)
|+++ +..|..|.+.|.+..... .+.+.+---|.. +..+++.+.++++. .+|. .+++|+-. +|
T Consensus 112 ~~~~~~~~l~~l~~~a~~~~~~~---~~~~vitVPa~~---~~~qr~~~~~Aa~~-----agl~----~~~li~Ep-~A- 174 (602)
T PF00012_consen 112 PEELSAMILKYLKEMAEKYLGEK---VTDVVITVPAYF---TDEQRQALRDAAEL-----AGLN----VLRLINEP-TA- 174 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSB---EEEEEEEE-TT-----HHHHHHHHHHHHH-----TT-E----EEEEEEHH-HH-
T ss_pred eecccccchhhhcccchhhcccc---cccceeeechhh---hhhhhhcccccccc-----cccc----cceeeccc-cc-
Confidence 4444 567777888787765322 223333333332 24677777777775 4452 45777533 32
Q ss_pred hhHHHHHHhhccCCCCCCceEEEEecCCCceeeEEe
Q 048388 197 YQWVTINYLLGNLGKKYSNTVGVVDLGGGSVQMAYA 232 (477)
Q Consensus 197 y~WvavNyllg~l~~~~~~t~gviDlGGgStQiaf~ 232 (477)
.++.|.+.+-. ..+++.|+|+|||++.++..
T Consensus 175 ---aa~~y~~~~~~--~~~~vlv~D~Gggt~dvs~~ 205 (602)
T PF00012_consen 175 ---AALAYGLERSD--KGKTVLVVDFGGGTFDVSVV 205 (602)
T ss_dssp ---HHHHTTTTSSS--SEEEEEEEEEESSEEEEEEE
T ss_pred ---ccccccccccc--cccceeccccccceEeeeeh
Confidence 24456554322 24678999999999999876
No 54
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=61.25 E-value=45 Score=37.56 Aligned_cols=93 Identities=17% Similarity=0.261 Sum_probs=55.4
Q ss_pred ChHHH-HHHHHHHHHHHHhhCCCCCCCCccEEEEeehhhhcCChhhHHHHHHHHHHHhhccCCcccCCCceEEccCCccc
Q 048388 117 DPQAA-ANSLASLLDKAQSVVPQDLRPKTPVKVGATAGLRQLGVDASDRILQAVRDLLKYKSAFKSKPEWVTVLDGSQEG 195 (477)
Q Consensus 117 ~~~~~-~~~l~~ll~~a~~~vp~~~~~~tpi~l~ATAGmR~l~~~~~~~il~~vr~~l~~~~~f~~~~~~v~IIsG~eEg 195 (477)
.|+++ +..|..|.+.|.+..... .+.+.+---|-.- ..+++.+.++.+. .+|. -+++|+-..=|
T Consensus 125 ~p~ei~a~iL~~lk~~ae~~lg~~---v~~~VITVPa~f~---~~qR~a~~~Aa~~-----AGl~----v~~li~EPtAA 189 (616)
T PRK05183 125 SPVEVSAEILKALRQRAEETLGGE---LDGAVITVPAYFD---DAQRQATKDAARL-----AGLN----VLRLLNEPTAA 189 (616)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCC---cceEEEEECCCCC---HHHHHHHHHHHHH-----cCCC----eEEEecchHHH
Confidence 35554 457777888888776432 2333333333222 3567777666664 3452 46888876555
Q ss_pred hhhHHHHHHhhccCCCCCCceEEEEecCCCceeeEEe
Q 048388 196 SYQWVTINYLLGNLGKKYSNTVGVVDLGGGSVQMAYA 232 (477)
Q Consensus 196 ~y~WvavNyllg~l~~~~~~t~gviDlGGgStQiaf~ 232 (477)
.++| .+.. ....++.|+|+|||++.++..
T Consensus 190 Alay-----~~~~---~~~~~vlV~DlGGGT~DvSv~ 218 (616)
T PRK05183 190 AIAY-----GLDS---GQEGVIAVYDLGGGTFDISIL 218 (616)
T ss_pred HHHh-----hccc---CCCCEEEEEECCCCeEEEEEE
Confidence 5443 3321 224578999999999998754
No 55
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=60.99 E-value=45 Score=37.52 Aligned_cols=93 Identities=19% Similarity=0.248 Sum_probs=55.8
Q ss_pred ChHHH-HHHHHHHHHHHHhhCCCCCCCCccEEEEeehhhhcCChhhHHHHHHHHHHHhhccCCcccCCCceEEccCCccc
Q 048388 117 DPQAA-ANSLASLLDKAQSVVPQDLRPKTPVKVGATAGLRQLGVDASDRILQAVRDLLKYKSAFKSKPEWVTVLDGSQEG 195 (477)
Q Consensus 117 ~~~~~-~~~l~~ll~~a~~~vp~~~~~~tpi~l~ATAGmR~l~~~~~~~il~~vr~~l~~~~~f~~~~~~v~IIsG~eEg 195 (477)
.|+++ +..|..|.+.|.+.... ..+.+.+---|..- ..++++++++.+. .+|. -+++|+...=|
T Consensus 109 ~peel~a~iL~~lk~~ae~~~g~---~v~~~VItVPa~f~---~~qR~a~~~Aa~~-----AGl~----v~~li~EptAA 173 (627)
T PRK00290 109 TPQEISAMILQKLKKDAEDYLGE---KVTEAVITVPAYFN---DAQRQATKDAGKI-----AGLE----VLRIINEPTAA 173 (627)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCC---CCceEEEEECCCCC---HHHHHHHHHHHHH-----cCCc----eEEEecchHHH
Confidence 45554 55677777778776542 22334433333332 4577777777664 3452 46777766554
Q ss_pred hhhHHHHHHhhccCCCCCCceEEEEecCCCceeeEEe
Q 048388 196 SYQWVTINYLLGNLGKKYSNTVGVVDLGGGSVQMAYA 232 (477)
Q Consensus 196 ~y~WvavNyllg~l~~~~~~t~gviDlGGgStQiaf~ 232 (477)
.+ .|.+.. ....++.|+|+|||++.++..
T Consensus 174 Al-----~y~~~~---~~~~~vlV~D~GggT~dvsv~ 202 (627)
T PRK00290 174 AL-----AYGLDK---KGDEKILVYDLGGGTFDVSIL 202 (627)
T ss_pred HH-----Hhhhcc---CCCCEEEEEECCCCeEEEEEE
Confidence 44 344332 124678999999999999764
No 56
>PTZ00004 actin-2; Provisional
Probab=60.94 E-value=66 Score=33.66 Aligned_cols=20 Identities=25% Similarity=0.179 Sum_probs=16.1
Q ss_pred ceEEEEecCCCceeeEEeec
Q 048388 215 NTVGVVDLGGGSVQMAYAIS 234 (477)
Q Consensus 215 ~t~gviDlGGgStQiaf~~~ 234 (477)
.|..|||+|.+.|+++=..+
T Consensus 149 ~tglVVDiG~~~t~v~pV~d 168 (378)
T PTZ00004 149 TTGIVLDSGDGVSHTVPIYE 168 (378)
T ss_pred ceEEEEECCCCcEEEEEEEC
Confidence 46779999999999985433
No 57
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=60.20 E-value=64 Score=33.51 Aligned_cols=86 Identities=16% Similarity=0.127 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhh-CCCCCCCCccEEEEeehhhhcCChhhHHHHHHHHHHHhhccCCcccCCCceEEccCCccchhhHHHH
Q 048388 124 SLASLLDKAQSV-VPQDLRPKTPVKVGATAGLRQLGVDASDRILQAVRDLLKYKSAFKSKPEWVTVLDGSQEGSYQWVTI 202 (477)
Q Consensus 124 ~l~~ll~~a~~~-vp~~~~~~tpi~l~ATAGmR~l~~~~~~~il~~vr~~l~~~~~f~~~~~~v~IIsG~eEg~y~Wvav 202 (477)
.+..+++.+-.. +.. .....||.+.-..- .+...++.+.+-+-+.++ | . .+-++. ++ +..
T Consensus 75 ~~e~i~~~~~~~~l~~-~~~~~~vll~~~~~---~~~~~r~~l~e~lfE~~~----~--~--~v~~~~---~~----~~a 135 (393)
T PF00022_consen 75 ALEEIWDYIFSNLLKV-DPSDHPVLLTEPPF---NPRSQREKLAEILFEKFG----V--P--SVYFIP---SP----LLA 135 (393)
T ss_dssp HHHHHHHHHHHTTT-S-SGGGSEEEEEESTT-----HHHHHHHHHHHHHTS--------S--EEEEEE---HH----HHH
T ss_pred cccccccccccccccc-ccccceeeeecccc---CCchhhhhhhhhhhcccc----c--c--eeeeee---cc----ccc
Confidence 355555554432 222 23445777654322 234555666655544322 2 2 455544 22 334
Q ss_pred HHhhccCCCCCCceEEEEecCCCceeeEEeec
Q 048388 203 NYLLGNLGKKYSNTVGVVDLGGGSVQMAYAIS 234 (477)
Q Consensus 203 Nyllg~l~~~~~~t~gviDlGGgStQiaf~~~ 234 (477)
-|..|. .|..|||+|-++|+|+-..+
T Consensus 136 ~~~~g~------~tglVVD~G~~~t~v~pV~d 161 (393)
T PF00022_consen 136 LYASGR------TTGLVVDIGYSSTSVVPVVD 161 (393)
T ss_dssp HHHTTB------SSEEEEEESSS-EEEEEEET
T ss_pred cccccc------ccccccccceeeeeeeeeee
Confidence 455552 47789999999999996544
No 58
>PLN03184 chloroplast Hsp70; Provisional
Probab=59.98 E-value=1.6e+02 Score=33.67 Aligned_cols=93 Identities=19% Similarity=0.283 Sum_probs=54.7
Q ss_pred ChHHH-HHHHHHHHHHHHhhCCCCCCCCccEEEEeehhhhcCChhhHHHHHHHHHHHhhccCCcccCCCceEEccCCccc
Q 048388 117 DPQAA-ANSLASLLDKAQSVVPQDLRPKTPVKVGATAGLRQLGVDASDRILQAVRDLLKYKSAFKSKPEWVTVLDGSQEG 195 (477)
Q Consensus 117 ~~~~~-~~~l~~ll~~a~~~vp~~~~~~tpi~l~ATAGmR~l~~~~~~~il~~vr~~l~~~~~f~~~~~~v~IIsG~eEg 195 (477)
.|+++ +..|..|.+.|.+.... ..+.+.+---|..- ..+++++.++.+. .+|. -+++|+-..=|
T Consensus 148 speei~a~iL~~lk~~ae~~lg~---~v~~~VITVPa~f~---~~qR~a~~~Aa~~-----AGl~----v~~li~EPtAA 212 (673)
T PLN03184 148 AAEEISAQVLRKLVDDASKFLND---KVTKAVITVPAYFN---DSQRTATKDAGRI-----AGLE----VLRIINEPTAA 212 (673)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCC---CCCeEEEEECCCCC---HHHHHHHHHHHHH-----CCCC----eEEEeCcHHHH
Confidence 34444 56777788878776532 23344444333332 3566676666654 3452 46777765443
Q ss_pred hhhHHHHHHhhccCCCCCCceEEEEecCCCceeeEEe
Q 048388 196 SYQWVTINYLLGNLGKKYSNTVGVVDLGGGSVQMAYA 232 (477)
Q Consensus 196 ~y~WvavNyllg~l~~~~~~t~gviDlGGgStQiaf~ 232 (477)
++.|.+.. ....++.|+|||||++.++..
T Consensus 213 -----Alayg~~~---~~~~~vlV~DlGgGT~DvSi~ 241 (673)
T PLN03184 213 -----SLAYGFEK---KSNETILVFDLGGGTFDVSVL 241 (673)
T ss_pred -----HHHhhccc---CCCCEEEEEECCCCeEEEEEE
Confidence 33444332 224578999999999999765
No 59
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=58.05 E-value=32 Score=37.34 Aligned_cols=61 Identities=28% Similarity=0.441 Sum_probs=35.1
Q ss_pred EEEEEEcCCCccEEEEEEEeCCCCceecccccce-EEeecCCccccCCChHHHHHHHHHHHHHHHhh
Q 048388 70 YAVIFDAGSSGSRVHVYCFDQNLDLVPIGKDLEL-FVQTKPGLSAYASDPQAAANSLASLLDKAQSV 135 (477)
Q Consensus 70 y~vvIDaGSsgsRl~Vy~~~~~~~l~~i~~~~e~-~~k~~pGLs~~~~~~~~~~~~l~~ll~~a~~~ 135 (477)
|.+.||+|+|++|+.+|. .+..++..... +. .....||.. ..+|+...+.+..+++.+.+.
T Consensus 2 ~~lgiDiGtt~iKa~l~d--~~g~~l~~~~~-~~~~~~~~~g~~--e~d~~~~~~~i~~~i~~~~~~ 63 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFD--KDGNIVAIHQK-EFTQIFPKPGWV--EHDPMEIWESVLSCIAEALAK 63 (493)
T ss_pred eEEEEecCCCceEEEEEC--CCCCEEEEEee-eccccCCCCCcE--eeCHHHHHHHHHHHHHHHHHH
Confidence 778899999999999996 33344332111 00 011223322 236777777776666666443
No 60
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=57.42 E-value=61 Score=36.15 Aligned_cols=94 Identities=19% Similarity=0.251 Sum_probs=55.0
Q ss_pred ChHHH-HHHHHHHHHHHHhhCCCCCCCCccEEEEeehhhhcCChhhHHHHHHHHHHHhhccCCcccCCCceEEccCCccc
Q 048388 117 DPQAA-ANSLASLLDKAQSVVPQDLRPKTPVKVGATAGLRQLGVDASDRILQAVRDLLKYKSAFKSKPEWVTVLDGSQEG 195 (477)
Q Consensus 117 ~~~~~-~~~l~~ll~~a~~~vp~~~~~~tpi~l~ATAGmR~l~~~~~~~il~~vr~~l~~~~~f~~~~~~v~IIsG~eEg 195 (477)
.|+++ +..|..|.+.|...... ..+.+.+---|..- ..++++++++.+. .+|. -+++|+...=|
T Consensus 106 ~peel~a~~L~~l~~~a~~~~~~---~v~~~VItVPa~f~---~~qR~a~~~Aa~~-----AGl~----v~~li~EptAA 170 (595)
T TIGR02350 106 TPQEISAMILQKLKKDAEAYLGE---KVTEAVITVPAYFN---DAQRQATKDAGKI-----AGLE----VLRIINEPTAA 170 (595)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCC---CCCeEEEEECCCCC---HHHHHHHHHHHHH-----cCCc----eEEEecchHHH
Confidence 45554 45677777777776532 22334443333332 3567777776654 3452 45777765554
Q ss_pred hhhHHHHHHhhccCCCCCCceEEEEecCCCceeeEEe
Q 048388 196 SYQWVTINYLLGNLGKKYSNTVGVVDLGGGSVQMAYA 232 (477)
Q Consensus 196 ~y~WvavNyllg~l~~~~~~t~gviDlGGgStQiaf~ 232 (477)
.+ .|.+..- ....++.|+|+|||++.++..
T Consensus 171 Al-----~y~~~~~--~~~~~vlV~D~Gggt~dvsv~ 200 (595)
T TIGR02350 171 AL-----AYGLDKS--KKDEKILVFDLGGGTFDVSIL 200 (595)
T ss_pred HH-----HHhhccc--CCCcEEEEEECCCCeEEEEEE
Confidence 43 4443221 224678999999999999765
No 61
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=57.15 E-value=34 Score=37.64 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=17.1
Q ss_pred EEEEEEcCCCccEEEEEEE
Q 048388 70 YAVIFDAGSSGSRVHVYCF 88 (477)
Q Consensus 70 y~vvIDaGSsgsRl~Vy~~ 88 (477)
|.+.||+|+|++|..||..
T Consensus 2 ~~lgiD~GTss~Ka~l~d~ 20 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDV 20 (536)
T ss_pred eEEEEecCCCceEEEEEEC
Confidence 6788999999999999973
No 62
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=57.06 E-value=58 Score=37.00 Aligned_cols=93 Identities=15% Similarity=0.255 Sum_probs=54.6
Q ss_pred ChHHH-HHHHHHHHHHHHhhCCCCCCCCccEEEEeehhhhcCChhhHHHHHHHHHHHhhccCCcccCCCceEEccCCccc
Q 048388 117 DPQAA-ANSLASLLDKAQSVVPQDLRPKTPVKVGATAGLRQLGVDASDRILQAVRDLLKYKSAFKSKPEWVTVLDGSQEG 195 (477)
Q Consensus 117 ~~~~~-~~~l~~ll~~a~~~vp~~~~~~tpi~l~ATAGmR~l~~~~~~~il~~vr~~l~~~~~f~~~~~~v~IIsG~eEg 195 (477)
.|+++ +..|..|.+.|.+.+... .+.+.+---|-. ...+++++.++.+. .+|. -+++|+...=|
T Consensus 150 speel~a~iL~~lk~~ae~~lg~~---v~~~VITVPa~f---~~~qR~a~~~Aa~~-----AGl~----v~~li~EptAA 214 (663)
T PTZ00400 150 SPSQIGAFVLEKMKETAESYLGRK---VKQAVITVPAYF---NDSQRQATKDAGKI-----AGLD----VLRIINEPTAA 214 (663)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCC---CceEEEEECCCC---CHHHHHHHHHHHHH-----cCCc----eEEEeCchHHH
Confidence 35554 445666777777765421 233333333322 24567777777665 3452 57788776655
Q ss_pred hhhHHHHHHhhccCCCCCCceEEEEecCCCceeeEEe
Q 048388 196 SYQWVTINYLLGNLGKKYSNTVGVVDLGGGSVQMAYA 232 (477)
Q Consensus 196 ~y~WvavNyllg~l~~~~~~t~gviDlGGgStQiaf~ 232 (477)
.++ |.+.. ....++.|+|+|||++.++..
T Consensus 215 Ala-----y~~~~---~~~~~vlV~DlGgGT~DvSv~ 243 (663)
T PTZ00400 215 ALA-----FGMDK---NDGKTIAVYDLGGGTFDISIL 243 (663)
T ss_pred HHH-----hcccc---CCCcEEEEEeCCCCeEEEEEE
Confidence 443 33321 224678999999999999864
No 63
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=55.85 E-value=29 Score=37.77 Aligned_cols=62 Identities=11% Similarity=0.203 Sum_probs=34.2
Q ss_pred EEEEEEcCCCccEEEEEEEeCCCCceecccccceEEeecCCccccCCChHHHHHHHHHHHHHHHhh
Q 048388 70 YAVIFDAGSSGSRVHVYCFDQNLDLVPIGKDLELFVQTKPGLSAYASDPQAAANSLASLLDKAQSV 135 (477)
Q Consensus 70 y~vvIDaGSsgsRl~Vy~~~~~~~l~~i~~~~e~~~k~~pGLs~~~~~~~~~~~~l~~ll~~a~~~ 135 (477)
|.+.||+|+|++|+.||.- +..++.... . .+....|.-.....+|+...+.+...++.+.+.
T Consensus 1 ~~lgiDiGtt~~K~~l~d~--~g~i~~~~~-~-~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~ 62 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEE--NGKIVAKSS-I-GYPLYTPASGMAEENPEEIFEAVLVTIREVSIN 62 (505)
T ss_pred CEEEEeccccceEEEEEcC--CCCEEEEEE-e-ecccccCCCCCeeeCHHHHHHHHHHHHHHHHHh
Confidence 5678999999999999963 333332110 0 011111111122346777766666666665544
No 64
>PTZ00288 glucokinase 1; Provisional
Probab=51.94 E-value=72 Score=34.14 Aligned_cols=62 Identities=19% Similarity=0.115 Sum_probs=42.5
Q ss_pred CceEEEEEEcCCCccEEEEEEEeCC-CCceecccccceEEeecCCccccCCChHHHHHHHHHHHHHHHhhCC
Q 048388 67 SKSYAVIFDAGSSGSRVHVYCFDQN-LDLVPIGKDLELFVQTKPGLSAYASDPQAAANSLASLLDKAQSVVP 137 (477)
Q Consensus 67 ~~~y~vvIDaGSsgsRl~Vy~~~~~-~~l~~i~~~~e~~~k~~pGLs~~~~~~~~~~~~l~~ll~~a~~~vp 137 (477)
...|.+.+|+|-|++|+-+|+..+. ..++.+ . .-+++-.+++..+..+++..+++...+..|
T Consensus 24 ~~~~~~~~DiGgt~~R~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 86 (405)
T PTZ00288 24 SGPIFVGCDVGGTNARVGFAREVQHDDSGVHI-----I----YVRFNVTKTDIRELLEFFDEVLQKLKKNLS 86 (405)
T ss_pred cCCeEEEEEecCCceEEEEEeccCCCCCceeE-----E----EEecccccccHHHHHHHHHHHHHHHHhcCc
Confidence 3458899999999999999987432 122221 1 111221345777888999999999888766
No 65
>PTZ00452 actin; Provisional
Probab=51.43 E-value=1.2e+02 Score=31.86 Aligned_cols=20 Identities=25% Similarity=0.195 Sum_probs=16.0
Q ss_pred ceEEEEecCCCceeeEEeec
Q 048388 215 NTVGVVDLGGGSVQMAYAIS 234 (477)
Q Consensus 215 ~t~gviDlGGgStQiaf~~~ 234 (477)
.+..|||+|-+.|+++-..+
T Consensus 148 ~tglVVDiG~~~t~v~PV~d 167 (375)
T PTZ00452 148 TIGLVVDSGEGVTHCVPVFE 167 (375)
T ss_pred ceeeeecCCCCcceEEEEEC
Confidence 46679999999999985543
No 66
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=51.37 E-value=91 Score=35.49 Aligned_cols=93 Identities=15% Similarity=0.243 Sum_probs=54.3
Q ss_pred ChHHHHH-HHHHHHHHHHhhCCCCCCCCccEEEEeehhhhcCChhhHHHHHHHHHHHhhccCCcccCCCceEEccCCccc
Q 048388 117 DPQAAAN-SLASLLDKAQSVVPQDLRPKTPVKVGATAGLRQLGVDASDRILQAVRDLLKYKSAFKSKPEWVTVLDGSQEG 195 (477)
Q Consensus 117 ~~~~~~~-~l~~ll~~a~~~vp~~~~~~tpi~l~ATAGmR~l~~~~~~~il~~vr~~l~~~~~f~~~~~~v~IIsG~eEg 195 (477)
.|+++.. .|..|.+.|++.+.. ..+.+.+---|..- ..+++++.++.+- -+|. -+++|+-..=|
T Consensus 136 speeisa~iL~~Lk~~Ae~~lg~---~v~~aVITVPayF~---~~qR~at~~Aa~~-----AGl~----v~rlInEPtAA 200 (657)
T PTZ00186 136 SPSQIGAFVLEKMKETAENFLGH---KVSNAVVTCPAYFN---DAQRQATKDAGTI-----AGLN----VIRVVNEPTAA 200 (657)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCC---ccceEEEEECCCCC---hHHHHHHHHHHHH-----cCCC----eEEEEcChHHH
Confidence 4666544 457777777776532 22334444444332 3566666665554 3452 46788776544
Q ss_pred hhhHHHHHHhhccCCCCCCceEEEEecCCCceeeEEe
Q 048388 196 SYQWVTINYLLGNLGKKYSNTVGVVDLGGGSVQMAYA 232 (477)
Q Consensus 196 ~y~WvavNyllg~l~~~~~~t~gviDlGGgStQiaf~ 232 (477)
.+ .|.+.. ....++.|+|||||++.++..
T Consensus 201 Al-----ayg~~~---~~~~~vlV~DlGGGT~DvSil 229 (657)
T PTZ00186 201 AL-----AYGMDK---TKDSLIAVYDLGGGTFDISVL 229 (657)
T ss_pred HH-----HHhccC---CCCCEEEEEECCCCeEEEEEE
Confidence 43 344332 224678999999999999765
No 67
>PRK00047 glpK glycerol kinase; Provisional
Probab=49.66 E-value=43 Score=36.39 Aligned_cols=61 Identities=25% Similarity=0.461 Sum_probs=34.6
Q ss_pred eEEEEEEcCCCccEEEEEEEeCCCCceecccccceE-EeecCCccccCCChHHHHHHHHHHHHHHHh
Q 048388 69 SYAVIFDAGSSGSRVHVYCFDQNLDLVPIGKDLELF-VQTKPGLSAYASDPQAAANSLASLLDKAQS 134 (477)
Q Consensus 69 ~y~vvIDaGSsgsRl~Vy~~~~~~~l~~i~~~~e~~-~k~~pGLs~~~~~~~~~~~~l~~ll~~a~~ 134 (477)
+|.+-||+|+|++|+.+|..+ ..++..... +.. ....||.. ..+|+...+.+...++.+.+
T Consensus 5 ~~~lgiD~GTts~Ka~l~d~~--g~~~~~~~~-~~~~~~~~~g~~--e~d~~~~~~~~~~~~~~~~~ 66 (498)
T PRK00047 5 KYILALDQGTTSSRAIIFDHD--GNIVSVAQK-EFTQIFPQPGWV--EHDPNEIWASQLSVIAEALA 66 (498)
T ss_pred CEEEEEecCCCceEEEEECCC--CCEEEEEee-eccccCCCCCeE--eeCHHHHHHHHHHHHHHHHH
Confidence 477889999999999998633 333332110 010 01123322 34787776666666665543
No 68
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=49.44 E-value=1.2e+02 Score=34.51 Aligned_cols=95 Identities=16% Similarity=0.230 Sum_probs=54.4
Q ss_pred ChHHH-HHHHHHHHHHHHhhCCCCCCCCccEEEEeehhhhcCChhhHHHHHHHHHHHhhccCCcccCCCceEEccCCccc
Q 048388 117 DPQAA-ANSLASLLDKAQSVVPQDLRPKTPVKVGATAGLRQLGVDASDRILQAVRDLLKYKSAFKSKPEWVTVLDGSQEG 195 (477)
Q Consensus 117 ~~~~~-~~~l~~ll~~a~~~vp~~~~~~tpi~l~ATAGmR~l~~~~~~~il~~vr~~l~~~~~f~~~~~~v~IIsG~eEg 195 (477)
.|+++ +..|..|.+.|++.... ..+.+.+---|-.- ..+++++.++.+. .+|. -+++|+...=|
T Consensus 116 ~peel~a~iL~~lk~~ae~~~g~---~v~~~VItVPa~f~---~~qR~a~~~Aa~~-----AGl~----v~~li~EptAA 180 (653)
T PTZ00009 116 HPEEISSMVLQKMKEIAEAYLGK---QVKDAVVTVPAYFN---DSQRQATKDAGTI-----AGLN----VLRIINEPTAA 180 (653)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCC---CcceeEEEeCCCCC---HHHHHHHHHHHHH-----cCCc----eeEEecchHHH
Confidence 35554 45667777777776532 12333333333322 4567777666664 3452 46788766443
Q ss_pred hhhHHHHHHhhccCCCCCCceEEEEecCCCceeeEEe
Q 048388 196 SYQWVTINYLLGNLGKKYSNTVGVVDLGGGSVQMAYA 232 (477)
Q Consensus 196 ~y~WvavNyllg~l~~~~~~t~gviDlGGgStQiaf~ 232 (477)
.+ .|.+.+-. ....++.|+|+|||++.++..
T Consensus 181 Al-----~y~~~~~~-~~~~~vlv~D~GggT~dvsv~ 211 (653)
T PTZ00009 181 AI-----AYGLDKKG-DGEKNVLIFDLGGGTFDVSLL 211 (653)
T ss_pred HH-----HHhhhccC-CCCCEEEEEECCCCeEEEEEE
Confidence 33 34433211 123578999999999999864
No 69
>PRK11678 putative chaperone; Provisional
Probab=49.18 E-value=76 Score=34.33 Aligned_cols=122 Identities=19% Similarity=0.208 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCccEEEEeehhhhcCC--hhhHH--HHHHHHHHHhhccCCcccCCCceEEccCCccchh
Q 048388 122 ANSLASLLDKAQSVVPQDLRPKTPVKVGATAGLRQLG--VDASD--RILQAVRDLLKYKSAFKSKPEWVTVLDGSQEGSY 197 (477)
Q Consensus 122 ~~~l~~ll~~a~~~vp~~~~~~tpi~l~ATAGmR~l~--~~~~~--~il~~vr~~l~~~~~f~~~~~~v~IIsG~eEg~y 197 (477)
+..|..|.+.|+..+.. ..+.+.+.--+...... +.++. ++|....+. -+|. .+++|+...=|.+
T Consensus 131 a~iL~~lk~~ae~~~g~---~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~----AG~~----~v~li~EPtAAAl 199 (450)
T PRK11678 131 CAMMLHIKQQAEAQLQA---AITQAVIGRPVNFQGLGGEEANRQAEGILERAAKR----AGFK----DVEFQFEPVAAGL 199 (450)
T ss_pred HHHHHHHHHHHHHHhCC---CCCcEEEEECCccccCCcchhHHHHHHHHHHHHHH----cCCC----EEEEEcCHHHHHH
Confidence 45566666777766532 12344444444443211 22322 233333332 3452 6788886655555
Q ss_pred hHHHHHHhhccCCCCCCceEEEEecCCCceeeEEeeccccccCCCCCCCCCCceeEEEEECCeEEEEEEeeeccccHHHH
Q 048388 198 QWVTINYLLGNLGKKYSNTVGVVDLGGGSVQMAYAISEKDAANAPTVPEGEDQYVNEMYLMGTKYYLYVHSYLHYGLLAA 277 (477)
Q Consensus 198 ~WvavNyllg~l~~~~~~t~gviDlGGgStQiaf~~~~~~~~~~p~~~~~~~~~~~~~~l~g~~y~lY~hSyLgyG~~aa 277 (477)
.|- .. + ...+++.|+|+|||.+.++...-. |. +. .-......|.+|+-...|-+..
T Consensus 200 ~y~-----~~-~--~~~~~vlV~D~GGGT~D~Svv~~~------~~-------~~---~~~~r~~~vla~~G~~lGG~Df 255 (450)
T PRK11678 200 DFE-----AT-L--TEEKRVLVVDIGGGTTDCSMLLMG------PS-------WR---GRADRSASLLGHSGQRIGGNDL 255 (450)
T ss_pred Hhc-----cc-c--CCCCeEEEEEeCCCeEEEEEEEec------Cc-------cc---ccCCcceeEEecCCCCCChHHH
Confidence 441 11 1 124678999999999999875322 10 00 0012345677777777887665
Q ss_pred H
Q 048388 278 R 278 (477)
Q Consensus 278 r 278 (477)
=
T Consensus 256 D 256 (450)
T PRK11678 256 D 256 (450)
T ss_pred H
Confidence 3
No 70
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=45.99 E-value=51 Score=36.32 Aligned_cols=59 Identities=10% Similarity=0.186 Sum_probs=33.5
Q ss_pred EEEEEcCCCccEEEEEEEeCCCCceecccccce-EEeecCCccccCCChHHHHHHHHHHHHHHHh
Q 048388 71 AVIFDAGSSGSRVHVYCFDQNLDLVPIGKDLEL-FVQTKPGLSAYASDPQAAANSLASLLDKAQS 134 (477)
Q Consensus 71 ~vvIDaGSsgsRl~Vy~~~~~~~l~~i~~~~e~-~~k~~pGLs~~~~~~~~~~~~l~~ll~~a~~ 134 (477)
.+.||+|+|++|+.||. .+..++..... +. .....||. ...+|+...+.+..+++.+.+
T Consensus 2 ~lgID~GTts~Ka~l~d--~~G~i~~~~~~-~~~~~~~~~g~--~eqdp~~~~~~~~~~i~~~~~ 61 (541)
T TIGR01315 2 YIGVDVGTGSARACIID--STGDILALAAQ-NIKTWTPSSGL--EGQSSVYIWQAICNCVKQVLA 61 (541)
T ss_pred EEEEEecCcCEEEEEEc--CCCCEEEEEEe-eeeeccCCCCc--ccCCHHHHHHHHHHHHHHHHH
Confidence 35799999999999996 33333321110 01 01122332 245788777666666666544
No 71
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=45.94 E-value=51 Score=35.32 Aligned_cols=58 Identities=26% Similarity=0.331 Sum_probs=33.7
Q ss_pred EEEEcCCCccEEEEEEEeCC-CCceecccccceEEeecCCccc----cCCChHHHHHHHHHHHHHHHh
Q 048388 72 VIFDAGSSGSRVHVYCFDQN-LDLVPIGKDLELFVQTKPGLSA----YASDPQAAANSLASLLDKAQS 134 (477)
Q Consensus 72 vvIDaGSsgsRl~Vy~~~~~-~~l~~i~~~~e~~~k~~pGLs~----~~~~~~~~~~~l~~ll~~a~~ 134 (477)
+.||+|+|++|+.++.++.+ ..+. + ....+..|+... ...+|+...+.+...++.+..
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 63 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLT-L----EEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDA 63 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEE-E----EEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhc
Confidence 36999999999999998743 2222 0 011222333221 123676666666666666544
No 72
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=44.41 E-value=62 Score=35.76 Aligned_cols=64 Identities=13% Similarity=0.180 Sum_probs=37.8
Q ss_pred ceEEEEEEcCCCccEEEEEEEeCCCCceecccccceEEeecCCccccCCChHHHHHHHHHHHHHHHh
Q 048388 68 KSYAVIFDAGSSGSRVHVYCFDQNLDLVPIGKDLELFVQTKPGLSAYASDPQAAANSLASLLDKAQS 134 (477)
Q Consensus 68 ~~y~vvIDaGSsgsRl~Vy~~~~~~~l~~i~~~~e~~~k~~pGLs~~~~~~~~~~~~l~~ll~~a~~ 134 (477)
++|.|-||.||.|-|.-||...++ .++....+.-..-+..+.+. ..+|++..+.+...+..+.+
T Consensus 2 ~~~~iGvDvGTgSaRA~v~D~~~G-~~la~a~~p~~~~~~~~~~~--~q~s~d~~~av~~aVr~~v~ 65 (544)
T COG1069 2 MAYVIGVDVGTGSARAGVFDCQTG-TLLARAVRPYPMWQPGSNLA--EQHSRDYWEAVCAAVRDVVA 65 (544)
T ss_pred ccEEEEEeecCCceeEEEEEcCCC-cchhhcccceeccccCcccc--ccCHHHHHHHHHHHHHHHHH
Confidence 469999999999999999987644 22221111001123333333 35777776666655555443
No 73
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=43.63 E-value=51 Score=33.69 Aligned_cols=81 Identities=20% Similarity=0.268 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhccCCcccCCCceEEccCCccchhhHHHHHHhhccCCCC-CCceEEEEecCCCceeeEEeeccccccCC
Q 048388 163 DRILQAVRDLLKYKSAFKSKPEWVTVLDGSQEGSYQWVTINYLLGNLGKK-YSNTVGVVDLGGGSVQMAYAISEKDAANA 241 (477)
Q Consensus 163 ~~il~~vr~~l~~~~~f~~~~~~v~IIsG~eEg~y~WvavNyllg~l~~~-~~~t~gviDlGGgStQiaf~~~~~~~~~~ 241 (477)
+.|-+++.+.++- .|+| |--|+..+-.++ |.-+ ......|+|||||||--++...+
T Consensus 98 ~~iA~~l~~~lgv---------~V~i--gGvEAemAi~GA------LTTPGt~~PlaIlDmG~GSTDAsii~~~------ 154 (332)
T PF08841_consen 98 QMIADELEEELGV---------PVEI--GGVEAEMAILGA------LTTPGTDKPLAILDMGGGSTDASIINRD------ 154 (332)
T ss_dssp HHHHHHHHHHHTS---------EEEE--ECEHHHHHHHHH------TTSTT--SSEEEEEE-SSEEEEEEE-TT------
T ss_pred HHHHHHHHHHHCC---------ceEE--ccccHHHHHhcc------cCCCCCCCCeEEEecCCCcccHHHhCCC------
Confidence 4555666665553 3444 555665554443 4322 23447899999999997765322
Q ss_pred CCCCCCCCceeEEEEECC--eEEEEEEeeeccccH
Q 048388 242 PTVPEGEDQYVNEMYLMG--TKYYLYVHSYLHYGL 274 (477)
Q Consensus 242 p~~~~~~~~~~~~~~l~g--~~y~lY~hSyLgyG~ 274 (477)
.-++.+++-| .-..+...|=||+.-
T Consensus 155 --------g~v~~iHlAGAG~mVTmlI~sELGl~d 181 (332)
T PF08841_consen 155 --------GEVTAIHLAGAGNMVTMLINSELGLED 181 (332)
T ss_dssp --------S-EEEEEEE-SHHHHHHHHHHHCT-S-
T ss_pred --------CcEEEEEecCCchhhHHHHHHhhCCCC
Confidence 3456666654 334445555555543
No 74
>PF13941 MutL: MutL protein
Probab=41.53 E-value=70 Score=34.79 Aligned_cols=74 Identities=19% Similarity=0.271 Sum_probs=41.6
Q ss_pred EEEEcCCCccEEEEEEEeCCCCceecccccceEEeecCCccccCCChHHHHHHHHHHHHHHHhhCCCCC-CCCccEEEEe
Q 048388 72 VIFDAGSSGSRVHVYCFDQNLDLVPIGKDLELFVQTKPGLSAYASDPQAAANSLASLLDKAQSVVPQDL-RPKTPVKVGA 150 (477)
Q Consensus 72 vvIDaGSsgsRl~Vy~~~~~~~l~~i~~~~e~~~k~~pGLs~~~~~~~~~~~~l~~ll~~a~~~vp~~~-~~~tpi~l~A 150 (477)
+++|+|||-|++.+|....+.. .-+ ..-..| .+- .+.++...+...++..++..|... .....++.-.
T Consensus 3 L~~DiGST~Tk~~l~d~~~~~~-~~i------g~a~ap--TTv--~~~Dv~~G~~~A~~~l~~~~~~~~~~~~~~~la~S 71 (457)
T PF13941_consen 3 LVVDIGSTYTKVTLFDLVDGEP-RLI------GQAEAP--TTV--EPGDVTIGLNNALEQLEEQTPASPDDGYDKVLACS 71 (457)
T ss_pred EEEEeCCcceEEeEEeccCCcc-EEE------EEEeCC--CCc--CcccHHHHHHHHHHHHHHhcCCCcccCceEEEEEC
Confidence 6899999999999997433211 111 111111 111 235677788888888888877533 3333333322
Q ss_pred e--hhhhc
Q 048388 151 T--AGLRQ 156 (477)
Q Consensus 151 T--AGmR~ 156 (477)
. .|||+
T Consensus 72 SAaGGLrm 79 (457)
T PF13941_consen 72 SAAGGLRM 79 (457)
T ss_pred CCCCcceE
Confidence 2 34666
No 75
>PRK09213 pur operon repressor; Provisional
Probab=41.24 E-value=40 Score=34.09 Aligned_cols=65 Identities=15% Similarity=0.161 Sum_probs=44.8
Q ss_pred ccccCCChHHHHHHHHHHHHHHHhhCCCCCCCCccEEEEeehhhhcCC---hhhHHHHHHHHHHHhhc
Q 048388 111 LSAYASDPQAAANSLASLLDKAQSVVPQDLRPKTPVKVGATAGLRQLG---VDASDRILQAVRDLLKY 175 (477)
Q Consensus 111 Ls~~~~~~~~~~~~l~~ll~~a~~~vp~~~~~~tpi~l~ATAGmR~l~---~~~~~~il~~vr~~l~~ 175 (477)
|+.|++.=+.|.-++-.=+...++...+...+.-...-+|..|.|..| .+++++|++.+.+.|.+
T Consensus 26 l~~f~~~~~~aks~ised~~i~~~~~~~~~~g~~~t~~ga~ggv~~~p~~~~~~a~~~~~~L~~~L~~ 93 (271)
T PRK09213 26 LTFFAERYGAAKSSISEDLVIIKETFEKQGIGTLETVPGAAGGVKYIPSISEEEAREFVEELCERLSE 93 (271)
T ss_pred HHHHHHHhccccchhhhhHHHHHHHHHhcCCceEEEeCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHh
Confidence 455555444444455444455555554455666677889999999988 57889999999999876
No 76
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=41.14 E-value=37 Score=36.38 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCccEEEEEEEeC
Q 048388 69 SYAVIFDAGSSGSRVHVYCFDQ 90 (477)
Q Consensus 69 ~y~vvIDaGSsgsRl~Vy~~~~ 90 (477)
.|++.||+|+|+.+.+++....
T Consensus 1 ~~GiAvDiGTTti~~~L~dl~~ 22 (412)
T PF14574_consen 1 NYGIAVDIGTTTIAAYLVDLET 22 (412)
T ss_dssp -EEEEEEE-SSEEEEEEEETTT
T ss_pred CEEEEEEcchhheeeEEEECCC
Confidence 4899999999999999987654
No 77
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=34.59 E-value=2.6e+02 Score=29.46 Aligned_cols=142 Identities=20% Similarity=0.269 Sum_probs=73.0
Q ss_pred EEEEEcCCCccEEEEEEEeC-C----CCc---eecccccceEEe--ecCCccccCCChHHHHHHHHHHH--HHHHhhC-C
Q 048388 71 AVIFDAGSSGSRVHVYCFDQ-N----LDL---VPIGKDLELFVQ--TKPGLSAYASDPQAAANSLASLL--DKAQSVV-P 137 (477)
Q Consensus 71 ~vvIDaGSsgsRl~Vy~~~~-~----~~l---~~i~~~~e~~~k--~~pGLs~~~~~~~~~~~~l~~ll--~~a~~~v-p 137 (477)
.|-||+|.|.|.+..-+.+- + ..+ .-+.+++.|... -.|=.+.-.-+ +..++.+. ++.+.-+ |
T Consensus 7 SVGIDiGTsTTQvifS~lel~Nmas~~~VPri~ii~kdi~~rS~i~FTPv~~q~~id----~~alk~~v~eeY~~AGi~p 82 (473)
T COG4819 7 SVGIDIGTSTTQVIFSKLELVNMASVSQVPRIEIIKKDISWRSPIFFTPVDKQGGID----EAALKKLVLEEYQAAGIAP 82 (473)
T ss_pred eeeeeccCceeeeeeeeeEEeecccccccceEEEEecceeeecceeeeeecccCCcc----HHHHHHHHHHHHHHcCCCh
Confidence 46799999999887766542 1 111 111122111100 01211111111 12344442 3334444 3
Q ss_pred CCCCCCccEEEEeehhhhcCChhhHHHHHHHHHHHhhccCCccc---CCCceEEccCCccchhhHHHHHHhhccCCCCCC
Q 048388 138 QDLRPKTPVKVGATAGLRQLGVDASDRILQAVRDLLKYKSAFKS---KPEWVTVLDGSQEGSYQWVTINYLLGNLGKKYS 214 (477)
Q Consensus 138 ~~~~~~tpi~l~ATAGmR~l~~~~~~~il~~vr~~l~~~~~f~~---~~~~v~IIsG~eEg~y~WvavNyllg~l~~~~~ 214 (477)
++-....-|.-+-||--| |+..++.++...+++ |.+ .++-=.||-|.--|.-.+ ..+..
T Consensus 83 esi~sGAvIITGEtArk~-----NA~~vl~alSg~aGD---FVVAtAGPdLESiIAGkGaGA~t~----------Seqr~ 144 (473)
T COG4819 83 ESIDSGAVIITGETARKR-----NARPVLMALSGSAGD---FVVATAGPDLESIIAGKGAGAQTL----------SEQRL 144 (473)
T ss_pred hccccccEEEeccccccc-----cchHHHHHhhhcccc---eEEEecCCCHHHHhccCCccccch----------hhhhc
Confidence 333333334445565444 456778888777665 754 244456777776654322 22223
Q ss_pred ceEEEEecCCCceeeEEeec
Q 048388 215 NTVGVVDLGGGSVQMAYAIS 234 (477)
Q Consensus 215 ~t~gviDlGGgStQiaf~~~ 234 (477)
..+.-+|+|||-|-+++...
T Consensus 145 t~v~NlDIGGGTtN~slFD~ 164 (473)
T COG4819 145 TRVLNLDIGGGTTNYSLFDA 164 (473)
T ss_pred eEEEEEeccCCccceeeecc
Confidence 34678999999999998744
No 78
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=32.83 E-value=80 Score=30.85 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=22.7
Q ss_pred HHHHHhhccCCCCCCceEEEEecCCCceeeEEeecc
Q 048388 200 VTINYLLGNLGKKYSNTVGVVDLGGGSVQMAYAISE 235 (477)
Q Consensus 200 vavNyllg~l~~~~~~t~gviDlGGgStQiaf~~~~ 235 (477)
-++.++|+ -+..+|+|+|||-|-|+.....
T Consensus 131 TAaa~vL~------l~dg~VVDiGGGTTGIsi~kkG 160 (277)
T COG4820 131 TAAADVLQ------LDDGGVVDIGGGTTGISIVKKG 160 (277)
T ss_pred hhHHHHhc------cCCCcEEEeCCCcceeEEEEcC
Confidence 45677775 2457899999999999976544
No 79
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=29.34 E-value=72 Score=32.19 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=44.8
Q ss_pred ccccCCChHHHHHHHHHHHHHHHhhCCCCCCCCccEEEEeehhhhcCC---hhhHHHHHHHHHHHhhc
Q 048388 111 LSAYASDPQAAANSLASLLDKAQSVVPQDLRPKTPVKVGATAGLRQLG---VDASDRILQAVRDLLKY 175 (477)
Q Consensus 111 Ls~~~~~~~~~~~~l~~ll~~a~~~vp~~~~~~tpi~l~ATAGmR~l~---~~~~~~il~~vr~~l~~ 175 (477)
|+.|++.=+.|.-++-.=+...++...+...+.-...-+|..|.|..| .++++++++.+.+.+.+
T Consensus 24 l~~f~~~~~~aks~ised~~i~~~~~~~~~~g~~~t~~ga~ggv~~~p~~~~~~~~~~~~~l~~~l~~ 91 (268)
T TIGR01743 24 LNFFSERYESAKSSISEDIVIIKETFEKFGIGKLLTVPGAAGGVKYIPKMSQAEAEEFVEELCQSLSE 91 (268)
T ss_pred HHHHHHHhccccchhhhhHHHHHHHHHhcCCceEEEeCCCCCCeEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 455554444444455444555555554455666677889999999987 47789999999999987
No 80
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=26.45 E-value=1.7e+02 Score=31.36 Aligned_cols=59 Identities=17% Similarity=0.266 Sum_probs=32.0
Q ss_pred EEEEcCCCccEEEEEEEeCCCCceecccccce-EEeecCCccccCCChHHHHHHHHHHHHHHHhh
Q 048388 72 VIFDAGSSGSRVHVYCFDQNLDLVPIGKDLEL-FVQTKPGLSAYASDPQAAANSLASLLDKAQSV 135 (477)
Q Consensus 72 vvIDaGSsgsRl~Vy~~~~~~~l~~i~~~~e~-~~k~~pGLs~~~~~~~~~~~~l~~ll~~a~~~ 135 (477)
+.||+|++++|+.||..+ ..++..... +. .....||-. ..+|+...+.+..+++.+.+.
T Consensus 1 lgIDiGtt~ik~~l~d~~--g~i~~~~~~-~~~~~~~~~g~~--e~d~~~~~~~l~~~i~~~~~~ 60 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQ--GEVIASGSA-PHTVISPHPGWS--EQDPEDWWDATEEAIKELLEQ 60 (481)
T ss_pred CceeecCcceEEEEECCC--CCEEEEEee-cccccCCCCCCe--eeCHHHHHHHHHHHHHHHHHh
Confidence 359999999999999633 233321110 00 011233422 246776666666666665443
No 81
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=25.20 E-value=62 Score=35.53 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=22.8
Q ss_pred CCceEEEEEEcCCCccEEEEEEEeCC
Q 048388 66 LSKSYAVIFDAGSSGSRVHVYCFDQN 91 (477)
Q Consensus 66 ~~~~y~vvIDaGSsgsRl~Vy~~~~~ 91 (477)
.++.|+|.+|.||||.|.|+-.....
T Consensus 161 ~~~~YGvAvDlGTS~i~aqlVDL~sg 186 (614)
T COG3894 161 KNEAYGVAVDLGTSGIRAQLVDLKSG 186 (614)
T ss_pred cceeeeeEEecccceeeeEEEeccCC
Confidence 47899999999999999999877653
No 82
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=25.02 E-value=3.1e+02 Score=28.15 Aligned_cols=98 Identities=13% Similarity=0.129 Sum_probs=54.7
Q ss_pred EEEEEEcCCCccEEEEEEEeCCCCceecccccceEEeecCCccccCCChHHHHHHHHHHHHH-HHhhCCCCCCCCccEEE
Q 048388 70 YAVIFDAGSSGSRVHVYCFDQNLDLVPIGKDLELFVQTKPGLSAYASDPQAAANSLASLLDK-AQSVVPQDLRPKTPVKV 148 (477)
Q Consensus 70 y~vvIDaGSsgsRl~Vy~~~~~~~l~~i~~~~e~~~k~~pGLs~~~~~~~~~~~~l~~ll~~-a~~~vp~~~~~~tpi~l 148 (477)
+.++||=|+|+.|+.+++ .+..++ ...+-.+|+.+-.+. ...+.|+. +... +.-...||.+
T Consensus 6 ~~i~iDWGTT~~R~wL~~--~dg~~l-------~~r~~~~G~tt~~~~------g~~~vL~~~l~a~---~~~~~~pVv~ 67 (306)
T COG3734 6 AYIAIDWGTTNLRAWLVR--GDGAVL-------AERRSEDGVTTLAKK------GFEDVLEAHLAAD---WRPAGLPVVA 67 (306)
T ss_pred eEEEEecCCccEEEEEEc--CCccee-------eeecccchhhhhhcC------CchHHHHHHHhhc---cccCCCcEEE
Confidence 557899999999999975 322222 224556777664442 34555552 2222 2334567887
Q ss_pred Eeehhhhc----CC----hhhHHHHHHHHHHHhhccCCcccCCCceEEccCC
Q 048388 149 GATAGLRQ----LG----VDASDRILQAVRDLLKYKSAFKSKPEWVTVLDGS 192 (477)
Q Consensus 149 ~ATAGmR~----l~----~~~~~~il~~vr~~l~~~~~f~~~~~~v~IIsG~ 192 (477)
.+=+|=|. .| +.--.+|.+...+. +. ..++|+||.|-
T Consensus 68 ~GMigSr~GW~EaPY~~~PA~~~~iaa~avrv-----~~--~~~~I~ilPGL 112 (306)
T COG3734 68 CGMIGSRVGWVEAPYLPVPAGLADIAAGAVRV-----GL--AGRPIRILPGL 112 (306)
T ss_pred eeccccccCceeCCcccCCcCHHHHHHHHhhc-----cC--CCCceEEecCc
Confidence 77777665 22 22333444333221 11 34589999985
No 83
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=24.90 E-value=45 Score=34.62 Aligned_cols=58 Identities=19% Similarity=0.139 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHhhccCCcccCCCceEEccCCccchhhHHHHHHhhccCCCCCCceEEEEecCCCceeeEEeec
Q 048388 160 DASDRILQAVRDLLKYKSAFKSKPEWVTVLDGSQEGSYQWVTINYLLGNLGKKYSNTVGVVDLGGGSVQMAYAIS 234 (477)
Q Consensus 160 ~~~~~il~~vr~~l~~~~~f~~~~~~v~IIsG~eEg~y~WvavNyllg~l~~~~~~t~gviDlGGgStQiaf~~~ 234 (477)
-.+.++.++.++.--. .|-+| ||..=+-+++.-... . ..-..++|||||+|+++...-
T Consensus 115 VErrAi~ea~~~aGa~---------~V~li---eEp~aAAIGaglpi~---e--p~G~mvvDIGgGTTevaVISl 172 (342)
T COG1077 115 VERRAIKEAAESAGAR---------EVYLI---EEPMAAAIGAGLPIM---E--PTGSMVVDIGGGTTEVAVISL 172 (342)
T ss_pred HHHHHHHHHHHhccCc---------eEEEe---ccHHHHHhcCCCccc---C--CCCCEEEEeCCCceeEEEEEe
Confidence 4567777777664332 44444 354444444332111 1 112459999999999998643
No 84
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=22.32 E-value=66 Score=34.47 Aligned_cols=21 Identities=19% Similarity=0.078 Sum_probs=18.3
Q ss_pred ceEEEEEEcCCCccEEEEEEE
Q 048388 68 KSYAVIFDAGSSGSRVHVYCF 88 (477)
Q Consensus 68 ~~y~vvIDaGSsgsRl~Vy~~ 88 (477)
++|.+=||+||+.|...|++-
T Consensus 1 m~y~lGIDIGSTsTKaVVmd~ 21 (432)
T TIGR02259 1 MECFVGIDLGSTTTKAVLMDD 21 (432)
T ss_pred CceEEEEEcCchhEEEEEEcC
Confidence 358889999999999999863
No 85
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=21.96 E-value=5.4e+02 Score=28.87 Aligned_cols=93 Identities=20% Similarity=0.285 Sum_probs=52.8
Q ss_pred ChHHH-HHHHHHHHHHHHhhCCCCCCCCccEEEEeehhhhcCChhhHHHHHHHHHHHhhccCCcccCCCceEEccCCccc
Q 048388 117 DPQAA-ANSLASLLDKAQSVVPQDLRPKTPVKVGATAGLRQLGVDASDRILQAVRDLLKYKSAFKSKPEWVTVLDGSQEG 195 (477)
Q Consensus 117 ~~~~~-~~~l~~ll~~a~~~vp~~~~~~tpi~l~ATAGmR~l~~~~~~~il~~vr~~l~~~~~f~~~~~~v~IIsG~eEg 195 (477)
.|+++ +..|..|.+.|...++..- +-+.+.=-| .-. ..++.+..++.+. .+|. .+++|+---=|
T Consensus 96 ~~eeisa~~L~~lk~~ae~~lg~~v---~~~VItVPa-yF~--d~qR~at~~A~~i-----aGl~----vlrlinEPtAA 160 (579)
T COG0443 96 TPEEISAMILTKLKEDAEAYLGEKV---TDAVITVPA-YFN--DAQRQATKDAARI-----AGLN----VLRLINEPTAA 160 (579)
T ss_pred CHHHHHHHHHHHHHHHHHHhhCCCc---ceEEEEeCC-CCC--HHHHHHHHHHHHH-----cCCC----eEEEecchHHH
Confidence 45554 6788889999999887542 222221111 111 3344444443333 3442 56777765544
Q ss_pred hhhHHHHHHhhccCCCCCCceEEEEecCCCceeeEEe
Q 048388 196 SYQWVTINYLLGNLGKKYSNTVGVVDLGGGSVQMAYA 232 (477)
Q Consensus 196 ~y~WvavNyllg~l~~~~~~t~gviDlGGgStQiaf~ 232 (477)
.|+ |.+.. ....++.|+|+|||.+-+...
T Consensus 161 Ala-----yg~~~---~~~~~vlV~DlGGGTfDvSll 189 (579)
T COG0443 161 ALA-----YGLDK---GKEKTVLVYDLGGGTFDVSLL 189 (579)
T ss_pred HHH-----hHhcc---CCCcEEEEEEcCCCCEEEEEE
Confidence 443 33332 234689999999999988765
No 86
>PRK03011 butyrate kinase; Provisional
Probab=20.35 E-value=1.3e+02 Score=31.52 Aligned_cols=18 Identities=17% Similarity=0.528 Sum_probs=16.3
Q ss_pred EEEEEEcCCCccEEEEEE
Q 048388 70 YAVIFDAGSSGSRVHVYC 87 (477)
Q Consensus 70 y~vvIDaGSsgsRl~Vy~ 87 (477)
.+.||.-|||+|++-||+
T Consensus 3 ~il~inpgststk~a~~~ 20 (358)
T PRK03011 3 RILVINPGSTSTKIAVFE 20 (358)
T ss_pred EEEEEcCCCchheEEEEc
Confidence 468999999999999995
Done!