Query 048389
Match_columns 566
No_of_seqs 277 out of 2724
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 09:03:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048389.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048389hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4799 Acetyl-CoA carboxylase 100.0 2E-131 4E-136 1057.7 48.6 513 39-566 3-526 (526)
2 PLN02820 3-methylcrotonyl-CoA 100.0 3E-129 6E-134 1068.8 58.2 544 23-566 26-569 (569)
3 KOG0540 3-Methylcrotonyl-CoA c 100.0 3E-120 7E-125 933.1 35.0 514 28-566 17-536 (536)
4 TIGR01117 mmdA methylmalonyl-C 100.0 3E-112 6E-117 930.5 53.3 499 50-566 2-512 (512)
5 PF01039 Carboxyl_trans: Carbo 100.0 1E-108 3E-113 902.4 36.9 478 72-564 1-493 (493)
6 KOG0368 Acetyl-CoA carboxylase 100.0 1.8E-49 4E-54 446.8 20.4 448 86-553 1507-2092(2196)
7 PRK07189 malonate decarboxylas 100.0 6.2E-46 1.4E-50 378.3 19.5 209 75-293 11-241 (301)
8 TIGR03133 malonate_beta malona 100.0 1.8E-44 3.9E-49 364.0 19.9 204 78-289 5-231 (274)
9 CHL00174 accD acetyl-CoA carbo 100.0 1.2E-43 2.5E-48 359.5 21.1 208 76-291 66-293 (296)
10 PRK05654 acetyl-CoA carboxylas 100.0 1.5E-42 3.2E-47 354.4 19.7 209 76-292 55-281 (292)
11 TIGR00515 accD acetyl-CoA carb 100.0 3.8E-42 8.3E-47 350.0 20.6 209 76-292 54-280 (285)
12 PRK05724 acetyl-CoA carboxylas 100.0 4.8E-37 1E-41 315.1 23.4 207 323-555 62-298 (319)
13 COG0777 AccD Acetyl-CoA carbox 100.0 1.2E-37 2.6E-42 306.4 16.5 210 75-291 55-281 (294)
14 TIGR00513 accA acetyl-CoA carb 100.0 1.3E-36 2.7E-41 311.6 23.4 205 325-555 64-298 (316)
15 TIGR03134 malonate_gamma malon 100.0 1.8E-36 3.9E-41 301.3 23.1 196 334-553 2-208 (238)
16 PRK12319 acetyl-CoA carboxylas 100.0 1.1E-35 2.5E-40 298.6 23.7 204 328-556 13-242 (256)
17 PRK05654 acetyl-CoA carboxylas 100.0 8.5E-35 1.8E-39 297.4 22.1 201 321-555 46-284 (292)
18 TIGR00515 accD acetyl-CoA carb 100.0 2.2E-34 4.7E-39 293.3 20.7 203 320-554 44-282 (285)
19 PLN03230 acetyl-coenzyme A car 100.0 9.1E-34 2E-38 296.1 22.9 200 330-554 138-367 (431)
20 CHL00198 accA acetyl-CoA carbo 100.0 3.1E-33 6.8E-38 286.6 22.6 201 330-555 71-301 (322)
21 PLN03229 acetyl-coenzyme A car 100.0 1.2E-30 2.6E-35 286.8 21.6 197 333-554 162-388 (762)
22 PRK12319 acetyl-CoA carboxylas 100.0 2.1E-29 4.6E-34 253.3 20.8 205 68-288 6-230 (256)
23 COG0777 AccD Acetyl-CoA carbox 100.0 3.5E-28 7.6E-33 239.7 18.0 203 319-557 45-287 (294)
24 CHL00198 accA acetyl-CoA carbo 100.0 6.9E-28 1.5E-32 247.2 17.2 195 65-275 59-269 (322)
25 TIGR00513 accA acetyl-CoA carb 100.0 3.9E-27 8.5E-32 241.7 19.3 197 65-275 56-266 (316)
26 PLN03229 acetyl-coenzyme A car 99.9 5E-27 1.1E-31 258.4 21.1 242 24-275 83-357 (762)
27 CHL00174 accD acetyl-CoA carbo 99.9 4.1E-27 8.9E-32 239.0 18.9 198 321-552 57-294 (296)
28 TIGR01117 mmdA methylmalonyl-C 99.9 4.5E-27 9.7E-32 258.4 19.0 200 75-291 275-495 (512)
29 PRK05724 acetyl-CoA carboxylas 99.9 6.1E-27 1.3E-31 240.6 16.9 196 65-275 56-266 (319)
30 COG0825 AccA Acetyl-CoA carbox 99.9 6.6E-27 1.4E-31 232.3 15.5 205 326-556 64-298 (317)
31 PLN03230 acetyl-coenzyme A car 99.9 1.9E-25 4.1E-30 233.9 22.9 195 68-275 129-336 (431)
32 COG4799 Acetyl-CoA carboxylase 99.9 3.2E-23 6.8E-28 223.7 16.3 203 75-294 284-511 (526)
33 PLN02820 3-methylcrotonyl-CoA 99.9 1.1E-22 2.4E-27 224.9 16.9 156 75-250 331-491 (569)
34 PF01039 Carboxyl_trans: Carbo 99.9 2.9E-22 6.4E-27 220.5 14.0 161 76-251 255-420 (493)
35 TIGR03134 malonate_gamma malon 99.9 5.1E-21 1.1E-25 190.8 17.8 191 81-291 2-206 (238)
36 TIGR03133 malonate_beta malona 99.9 1.4E-20 3E-25 190.6 20.4 196 330-550 4-232 (274)
37 KOG0540 3-Methylcrotonyl-CoA c 99.9 2E-21 4.3E-26 202.1 12.7 156 70-241 304-463 (536)
38 PRK07189 malonate decarboxylas 99.8 6E-19 1.3E-23 180.6 16.8 150 329-485 12-192 (301)
39 COG0825 AccA Acetyl-CoA carbox 99.8 2E-19 4.3E-24 179.2 10.5 215 46-275 31-265 (317)
40 PF06833 MdcE: Malonate decarb 99.8 1.3E-17 2.7E-22 163.9 14.6 173 356-553 17-206 (234)
41 TIGR03222 benzo_boxC benzoyl-C 98.7 7.6E-06 1.6E-10 91.5 26.3 362 139-554 42-482 (546)
42 PF03255 ACCA: Acetyl co-enzym 98.6 8.3E-08 1.8E-12 87.8 8.1 85 65-158 53-145 (145)
43 PF06833 MdcE: Malonate decarb 98.5 5.1E-07 1.1E-11 89.5 10.2 137 112-252 15-155 (234)
44 PRK08184 benzoyl-CoA-dihydrodi 98.5 3E-06 6.5E-11 94.9 16.7 369 140-554 47-486 (550)
45 cd07020 Clp_protease_NfeD_1 No 98.3 1.1E-05 2.5E-10 78.2 13.4 94 372-479 3-100 (187)
46 PF03255 ACCA: Acetyl co-enzym 98.3 1.9E-06 4.1E-11 79.1 7.3 64 330-395 65-145 (145)
47 cd07021 Clp_protease_NfeD_like 98.2 3.4E-05 7.4E-10 74.4 15.0 94 371-478 2-96 (178)
48 cd07015 Clp_protease_NfeD Nodu 98.2 1.2E-05 2.6E-10 77.0 11.6 145 372-537 3-165 (172)
49 cd07020 Clp_protease_NfeD_1 No 97.9 3.8E-05 8.2E-10 74.5 8.6 126 140-281 8-170 (187)
50 PRK00277 clpP ATP-dependent Cl 97.7 0.0014 3.1E-08 64.4 15.8 142 377-538 38-197 (200)
51 TIGR00705 SppA_67K signal pept 97.6 0.0018 3.8E-08 73.6 17.1 84 383-477 330-415 (584)
52 PRK10949 protease 4; Provision 97.6 0.0081 1.8E-07 68.6 21.9 84 383-477 348-433 (618)
53 cd07016 S14_ClpP_1 Caseinolyti 97.5 0.0008 1.7E-08 63.4 11.0 83 382-479 15-97 (160)
54 TIGR00706 SppA_dom signal pept 97.5 0.0013 2.8E-08 64.9 12.5 162 370-546 2-204 (207)
55 cd07014 S49_SppA Signal peptid 97.5 0.0022 4.7E-08 61.6 13.8 144 383-544 23-176 (177)
56 cd07023 S49_Sppa_N_C Signal pe 97.5 0.00047 1E-08 67.9 9.1 98 370-478 2-104 (208)
57 PRK12553 ATP-dependent Clp pro 97.5 0.0036 7.8E-08 61.9 14.9 91 377-479 42-134 (207)
58 COG1030 NfeD Membrane-bound se 97.4 0.0025 5.4E-08 68.7 14.1 98 366-478 24-126 (436)
59 PRK14512 ATP-dependent Clp pro 97.4 0.0029 6.2E-08 62.1 13.5 141 377-537 30-188 (197)
60 cd07019 S49_SppA_1 Signal pept 97.4 0.00084 1.8E-08 66.4 9.9 84 384-478 23-108 (211)
61 TIGR02280 PaaB1 phenylacetate 97.4 0.0092 2E-07 60.7 17.1 157 377-554 21-198 (256)
62 PF00378 ECH: Enoyl-CoA hydrat 97.3 0.0068 1.5E-07 61.0 15.7 158 377-555 20-196 (245)
63 PRK06143 enoyl-CoA hydratase; 97.3 0.012 2.5E-07 60.0 17.3 158 377-555 29-205 (256)
64 cd00394 Clp_protease_like Case 97.3 0.0045 9.7E-08 58.2 13.1 89 377-479 6-96 (161)
65 cd07022 S49_Sppa_36K_type Sign 97.3 0.0023 4.9E-08 63.5 11.1 154 379-544 22-213 (214)
66 PRK06144 enoyl-CoA hydratase; 97.3 0.013 2.9E-07 59.8 16.9 158 377-554 30-208 (262)
67 cd07013 S14_ClpP Caseinolytic 97.3 0.0053 1.2E-07 58.3 13.0 90 377-478 7-98 (162)
68 TIGR00493 clpP ATP-dependent C 97.3 0.013 2.7E-07 57.3 15.9 141 377-537 33-191 (191)
69 cd07021 Clp_protease_NfeD_like 97.3 0.00079 1.7E-08 65.0 7.4 89 140-242 8-97 (178)
70 PRK06213 enoyl-CoA hydratase; 97.3 0.018 3.9E-07 57.5 17.5 156 377-554 24-197 (229)
71 cd07018 S49_SppA_67K_type Sign 97.2 0.0055 1.2E-07 61.1 13.7 153 381-545 28-221 (222)
72 PRK09076 enoyl-CoA hydratase; 97.2 0.014 3E-07 59.5 16.9 157 377-554 24-200 (258)
73 cd06558 crotonase-like Crotona 97.2 0.0039 8.5E-08 60.1 12.3 149 138-290 19-194 (195)
74 COG1024 CaiD Enoyl-CoA hydrata 97.2 0.0036 7.8E-08 63.6 12.4 155 128-291 15-201 (257)
75 CHL00028 clpP ATP-dependent Cl 97.2 0.0063 1.4E-07 59.8 13.6 144 377-539 37-198 (200)
76 PRK07659 enoyl-CoA hydratase; 97.2 0.012 2.7E-07 59.9 16.3 157 377-554 28-202 (260)
77 PRK08150 enoyl-CoA hydratase; 97.2 0.016 3.4E-07 59.1 16.9 155 377-553 24-196 (255)
78 PLN02267 enoyl-CoA hydratase/i 97.2 0.0042 9.2E-08 62.6 12.2 156 124-291 7-199 (239)
79 PRK06127 enoyl-CoA hydratase; 97.2 0.015 3.3E-07 59.6 16.4 158 377-554 33-211 (269)
80 PRK07854 enoyl-CoA hydratase; 97.2 0.0043 9.4E-08 62.7 12.2 151 130-289 13-186 (243)
81 PRK12551 ATP-dependent Clp pro 97.2 0.015 3.3E-07 57.0 15.5 142 377-538 32-191 (196)
82 PRK08139 enoyl-CoA hydratase; 97.2 0.02 4.4E-07 58.6 17.1 156 377-554 33-208 (266)
83 PF00378 ECH: Enoyl-CoA hydrat 97.2 0.0018 3.8E-08 65.2 9.2 157 123-292 4-193 (245)
84 cd06558 crotonase-like Crotona 97.1 0.027 5.9E-07 54.2 17.0 150 377-546 21-190 (195)
85 PRK07327 enoyl-CoA hydratase; 97.1 0.019 4.1E-07 58.8 16.7 157 377-554 34-211 (268)
86 PRK07657 enoyl-CoA hydratase; 97.1 0.016 3.4E-07 59.1 16.0 158 377-554 26-202 (260)
87 PRK06495 enoyl-CoA hydratase; 97.1 0.02 4.3E-07 58.3 16.6 157 377-554 25-199 (257)
88 PRK14514 ATP-dependent Clp pro 97.1 0.014 3E-07 58.3 14.8 143 377-538 61-220 (221)
89 PRK09120 p-hydroxycinnamoyl Co 97.1 0.021 4.5E-07 58.8 16.2 158 377-554 30-209 (275)
90 PLN02600 enoyl-CoA hydratase 97.1 0.028 6.1E-07 57.0 16.9 157 377-554 17-193 (251)
91 PRK05995 enoyl-CoA hydratase; 97.1 0.028 6.1E-07 57.3 17.0 157 377-554 26-203 (262)
92 PRK05809 3-hydroxybutyryl-CoA 97.1 0.028 6.1E-07 57.2 16.9 158 377-554 26-202 (260)
93 PRK07260 enoyl-CoA hydratase; 97.1 0.035 7.6E-07 56.4 17.5 156 377-554 24-203 (255)
94 PRK11423 methylmalonyl-CoA dec 97.0 0.032 7E-07 57.0 17.2 156 377-554 26-201 (261)
95 cd07017 S14_ClpP_2 Caseinolyti 97.0 0.011 2.5E-07 56.4 13.1 91 375-479 14-108 (171)
96 PRK09674 enoyl-CoA hydratase-i 97.0 0.032 6.9E-07 56.7 16.9 156 377-554 24-197 (255)
97 PLN02664 enoyl-CoA hydratase/d 97.0 0.04 8.6E-07 56.7 17.1 158 377-554 30-217 (275)
98 TIGR02280 PaaB1 phenylacetate 96.9 0.0094 2E-07 60.6 12.2 163 124-291 6-195 (256)
99 PRK05981 enoyl-CoA hydratase; 96.9 0.047 1E-06 55.8 17.3 158 377-555 26-209 (266)
100 PRK08138 enoyl-CoA hydratase; 96.9 0.03 6.5E-07 57.1 15.9 156 377-553 30-202 (261)
101 PRK14513 ATP-dependent Clp pro 96.9 0.036 7.7E-07 54.6 15.6 143 377-539 34-194 (201)
102 PRK07110 polyketide biosynthes 96.9 0.013 2.8E-07 59.4 13.1 154 130-291 18-196 (249)
103 PRK07112 polyketide biosynthes 96.9 0.012 2.6E-07 59.8 12.9 145 128-280 15-187 (255)
104 PRK11423 methylmalonyl-CoA dec 96.9 0.0063 1.4E-07 62.2 10.8 161 123-291 10-198 (261)
105 PRK08272 enoyl-CoA hydratase; 96.9 0.036 7.7E-07 57.9 16.6 157 377-555 32-230 (302)
106 PRK08140 enoyl-CoA hydratase; 96.9 0.052 1.1E-06 55.3 17.4 158 377-555 26-205 (262)
107 PRK06142 enoyl-CoA hydratase; 96.9 0.052 1.1E-06 55.7 17.4 158 377-554 28-215 (272)
108 PRK07658 enoyl-CoA hydratase; 96.9 0.038 8.2E-07 56.1 16.3 157 377-553 23-198 (257)
109 PRK07938 enoyl-CoA hydratase; 96.9 0.038 8.2E-07 56.0 16.1 157 377-554 23-196 (249)
110 PRK09674 enoyl-CoA hydratase-i 96.9 0.0095 2.1E-07 60.6 11.7 155 129-291 14-194 (255)
111 PRK07511 enoyl-CoA hydratase; 96.9 0.075 1.6E-06 54.1 18.3 157 377-553 25-202 (260)
112 TIGR01929 menB naphthoate synt 96.9 0.03 6.4E-07 57.1 15.3 157 377-554 25-202 (259)
113 PF00574 CLP_protease: Clp pro 96.9 0.0085 1.8E-07 57.7 10.7 89 377-478 23-114 (182)
114 PRK06190 enoyl-CoA hydratase; 96.9 0.012 2.7E-07 60.0 12.4 160 124-291 11-196 (258)
115 PRK07468 enoyl-CoA hydratase; 96.9 0.049 1.1E-06 55.6 16.8 157 377-554 27-204 (262)
116 PRK05862 enoyl-CoA hydratase; 96.9 0.045 9.7E-07 55.7 16.4 156 377-553 26-198 (257)
117 PRK11778 putative inner membra 96.9 0.013 2.8E-07 61.8 12.6 163 369-543 91-292 (330)
118 PRK05862 enoyl-CoA hydratase; 96.9 0.011 2.4E-07 60.1 11.9 163 123-291 10-196 (257)
119 TIGR03210 badI 2-ketocyclohexa 96.8 0.058 1.3E-06 54.9 17.0 157 377-554 24-199 (256)
120 PRK08138 enoyl-CoA hydratase; 96.8 0.014 3.1E-07 59.5 12.1 162 124-291 15-200 (261)
121 PRK05980 enoyl-CoA hydratase; 96.8 0.055 1.2E-06 55.1 16.4 156 377-553 25-204 (260)
122 PRK06688 enoyl-CoA hydratase; 96.8 0.06 1.3E-06 54.7 16.5 157 377-554 27-201 (259)
123 PRK05869 enoyl-CoA hydratase; 96.8 0.07 1.5E-06 53.2 16.6 159 377-555 29-205 (222)
124 PRK07396 dihydroxynaphthoic ac 96.8 0.05 1.1E-06 55.9 16.0 156 377-554 35-212 (273)
125 PRK06023 enoyl-CoA hydratase; 96.7 0.1 2.2E-06 52.9 17.9 165 369-554 15-202 (251)
126 PRK05981 enoyl-CoA hydratase; 96.7 0.016 3.4E-07 59.3 12.0 160 128-291 14-205 (266)
127 TIGR03189 dienoyl_CoA_hyt cycl 96.7 0.016 3.5E-07 58.8 11.9 148 123-278 7-178 (251)
128 cd07015 Clp_protease_NfeD Nodu 96.7 0.0053 1.1E-07 59.0 7.7 89 140-242 8-100 (172)
129 PRK06688 enoyl-CoA hydratase; 96.7 0.014 3.1E-07 59.3 11.3 154 130-291 18-198 (259)
130 PRK05869 enoyl-CoA hydratase; 96.7 0.021 4.6E-07 56.9 12.3 154 129-291 20-201 (222)
131 PRK07112 polyketide biosynthes 96.7 0.086 1.9E-06 53.6 16.8 142 377-539 26-185 (255)
132 PRK07110 polyketide biosynthes 96.7 0.098 2.1E-06 53.0 17.0 158 377-555 27-200 (249)
133 PRK09245 enoyl-CoA hydratase; 96.7 0.083 1.8E-06 54.0 16.6 157 377-554 25-208 (266)
134 PLN02267 enoyl-CoA hydratase/i 96.6 0.059 1.3E-06 54.3 15.2 158 377-554 21-202 (239)
135 cd07014 S49_SppA Signal peptid 96.6 0.0093 2E-07 57.2 8.9 94 139-243 16-111 (177)
136 PRK06494 enoyl-CoA hydratase; 96.6 0.027 5.9E-07 57.4 12.8 163 123-291 10-196 (259)
137 PRK07511 enoyl-CoA hydratase; 96.6 0.019 4.1E-07 58.5 11.5 164 123-291 9-200 (260)
138 PRK08260 enoyl-CoA hydratase; 96.6 0.075 1.6E-06 55.3 16.2 155 377-552 26-216 (296)
139 COG0616 SppA Periplasmic serin 96.6 0.021 4.6E-07 60.1 12.0 153 381-546 82-271 (317)
140 PRK08140 enoyl-CoA hydratase; 96.6 0.019 4.2E-07 58.5 11.4 163 124-291 11-201 (262)
141 PRK08321 naphthoate synthase; 96.6 0.092 2E-06 54.9 16.6 157 377-555 47-242 (302)
142 PRK07468 enoyl-CoA hydratase; 96.6 0.03 6.4E-07 57.2 12.6 154 130-289 18-199 (262)
143 cd07016 S14_ClpP_1 Caseinolyti 96.6 0.004 8.7E-08 58.6 5.7 88 140-242 7-97 (160)
144 PRK07659 enoyl-CoA hydratase; 96.6 0.012 2.7E-07 59.9 9.7 162 123-291 12-199 (260)
145 PRK07827 enoyl-CoA hydratase; 96.5 0.032 7E-07 56.8 12.5 103 131-238 20-136 (260)
146 PRK05674 gamma-carboxygeranoyl 96.5 0.042 9.1E-07 56.2 13.3 157 130-291 19-202 (265)
147 PRK06563 enoyl-CoA hydratase; 96.5 0.11 2.4E-06 52.7 16.3 156 377-552 21-195 (255)
148 PRK05809 3-hydroxybutyryl-CoA 96.5 0.019 4.2E-07 58.4 10.7 157 130-291 17-199 (260)
149 PRK05674 gamma-carboxygeranoyl 96.5 0.097 2.1E-06 53.6 15.9 156 377-554 28-205 (265)
150 PRK09120 p-hydroxycinnamoyl Co 96.5 0.033 7.2E-07 57.3 12.5 160 128-291 18-206 (275)
151 PRK08150 enoyl-CoA hydratase; 96.5 0.04 8.6E-07 56.1 12.9 154 124-291 9-194 (255)
152 PRK08321 naphthoate synthase; 96.5 0.037 8E-07 57.8 12.9 164 124-291 32-238 (302)
153 PRK03580 carnitinyl-CoA dehydr 96.5 0.1 2.2E-06 53.3 15.8 157 377-554 24-199 (261)
154 PRK06144 enoyl-CoA hydratase; 96.5 0.025 5.4E-07 57.8 11.4 161 123-291 14-205 (262)
155 PRK09076 enoyl-CoA hydratase; 96.5 0.033 7.2E-07 56.7 12.3 162 124-291 10-197 (258)
156 PRK06023 enoyl-CoA hydratase; 96.5 0.039 8.4E-07 56.0 12.7 157 128-291 16-199 (251)
157 PRK06495 enoyl-CoA hydratase; 96.5 0.033 7.1E-07 56.7 12.2 162 124-291 11-196 (257)
158 PRK06494 enoyl-CoA hydratase; 96.5 0.15 3.1E-06 52.0 16.9 156 377-554 26-199 (259)
159 PRK05864 enoyl-CoA hydratase; 96.5 0.12 2.6E-06 53.2 16.4 158 377-554 32-215 (276)
160 PRK08258 enoyl-CoA hydratase; 96.5 0.12 2.6E-06 53.2 16.4 157 377-554 39-219 (277)
161 PLN03214 probable enoyl-CoA hy 96.5 0.17 3.7E-06 52.2 17.5 158 377-554 33-213 (278)
162 TIGR01929 menB naphthoate synt 96.5 0.031 6.6E-07 57.0 11.8 160 124-291 10-199 (259)
163 PF01972 SDH_sah: Serine dehyd 96.4 0.023 5E-07 57.9 10.6 113 350-479 43-157 (285)
164 PRK06127 enoyl-CoA hydratase; 96.4 0.04 8.6E-07 56.5 12.6 161 128-292 21-209 (269)
165 PRK08252 enoyl-CoA hydratase; 96.4 0.051 1.1E-06 55.2 13.3 162 123-291 9-193 (254)
166 PRK07799 enoyl-CoA hydratase; 96.4 0.039 8.4E-07 56.3 12.3 164 123-291 11-202 (263)
167 PRK07260 enoyl-CoA hydratase; 96.4 0.041 8.8E-07 55.9 12.4 163 124-291 9-200 (255)
168 PRK07657 enoyl-CoA hydratase; 96.4 0.037 8E-07 56.4 12.1 157 130-291 17-199 (260)
169 PRK07938 enoyl-CoA hydratase; 96.4 0.022 4.8E-07 57.7 10.4 154 129-291 14-193 (249)
170 PRK06213 enoyl-CoA hydratase; 96.4 0.055 1.2E-06 54.0 13.1 148 140-291 24-194 (229)
171 PLN02888 enoyl-CoA hydratase 96.4 0.18 3.9E-06 51.6 17.1 155 377-552 32-202 (265)
172 TIGR03210 badI 2-ketocyclohexa 96.4 0.043 9.4E-07 55.8 12.4 155 129-291 14-196 (256)
173 PRK06142 enoyl-CoA hydratase; 96.4 0.048 1E-06 56.0 12.8 161 124-291 13-212 (272)
174 PLN02921 naphthoate synthase 96.4 0.13 2.7E-06 54.5 16.3 157 377-554 89-266 (327)
175 PLN02664 enoyl-CoA hydratase/d 96.4 0.059 1.3E-06 55.4 13.5 158 128-289 19-212 (275)
176 PRK06563 enoyl-CoA hydratase; 96.4 0.055 1.2E-06 55.0 13.1 161 124-291 6-194 (255)
177 PRK06072 enoyl-CoA hydratase; 96.4 0.036 7.7E-07 56.2 11.7 149 129-289 12-189 (248)
178 PRK05995 enoyl-CoA hydratase; 96.3 0.059 1.3E-06 54.9 13.2 154 130-291 17-200 (262)
179 PRK08258 enoyl-CoA hydratase; 96.3 0.028 6.1E-07 57.9 10.9 164 123-291 23-216 (277)
180 PRK06190 enoyl-CoA hydratase; 96.3 0.2 4.3E-06 51.1 17.0 157 377-554 26-199 (258)
181 TIGR03200 dearomat_oah 6-oxocy 96.3 0.19 4.1E-06 53.6 17.1 143 377-540 50-215 (360)
182 TIGR03189 dienoyl_CoA_hyt cycl 96.3 0.21 4.6E-06 50.7 16.9 140 377-539 22-178 (251)
183 COG0740 ClpP Protease subunit 96.3 0.05 1.1E-06 53.3 11.6 137 383-539 40-194 (200)
184 PLN02600 enoyl-CoA hydratase 96.3 0.051 1.1E-06 55.1 12.2 156 131-291 9-190 (251)
185 PLN02888 enoyl-CoA hydratase 96.2 0.075 1.6E-06 54.4 13.3 159 125-291 18-201 (265)
186 PRK07327 enoyl-CoA hydratase; 96.2 0.07 1.5E-06 54.7 13.0 153 129-291 24-208 (268)
187 cd00394 Clp_protease_like Case 96.2 0.014 3E-07 54.8 7.3 91 139-243 5-97 (161)
188 cd07019 S49_SppA_1 Signal pept 96.2 0.028 6.1E-07 55.6 9.6 86 145-241 21-108 (211)
189 PRK08259 enoyl-CoA hydratase; 96.2 0.18 3.9E-06 51.2 15.8 158 377-554 25-198 (254)
190 PRK05980 enoyl-CoA hydratase; 96.2 0.045 9.8E-07 55.7 11.4 163 124-291 10-202 (260)
191 PRK07854 enoyl-CoA hydratase; 96.2 0.26 5.6E-06 49.8 16.8 94 377-475 22-121 (243)
192 PRK06210 enoyl-CoA hydratase; 96.2 0.31 6.8E-06 49.9 17.6 168 365-552 11-211 (272)
193 PRK08290 enoyl-CoA hydratase; 96.2 0.23 5.1E-06 51.5 16.7 156 377-555 26-222 (288)
194 PRK08260 enoyl-CoA hydratase; 96.2 0.059 1.3E-06 56.1 12.3 150 130-289 17-213 (296)
195 PRK08139 enoyl-CoA hydratase; 96.2 0.07 1.5E-06 54.6 12.6 158 128-291 22-205 (266)
196 PRK08259 enoyl-CoA hydratase; 96.2 0.042 9E-07 55.9 10.9 163 123-291 9-195 (254)
197 PRK07396 dihydroxynaphthoic ac 96.2 0.075 1.6E-06 54.6 12.9 164 123-291 19-209 (273)
198 KOG0840 ATP-dependent Clp prot 96.2 0.031 6.7E-07 56.2 9.5 150 377-545 99-266 (275)
199 PRK06210 enoyl-CoA hydratase; 96.1 0.048 1E-06 55.9 11.4 160 123-291 11-210 (272)
200 PRK07799 enoyl-CoA hydratase; 96.1 0.22 4.7E-06 50.8 16.1 156 377-554 27-205 (263)
201 PRK03580 carnitinyl-CoA dehydr 96.1 0.068 1.5E-06 54.5 12.2 162 124-291 10-196 (261)
202 cd07022 S49_Sppa_36K_type Sign 96.1 0.032 6.9E-07 55.3 9.5 92 139-242 19-112 (214)
203 PRK12552 ATP-dependent Clp pro 96.1 0.14 3E-06 51.2 13.8 146 382-538 52-215 (222)
204 COG1030 NfeD Membrane-bound se 96.1 0.019 4.2E-07 62.0 8.3 141 124-285 24-197 (436)
205 PRK08788 enoyl-CoA hydratase; 96.1 0.29 6.3E-06 50.8 16.8 155 377-553 38-225 (287)
206 PRK09245 enoyl-CoA hydratase; 96.0 0.066 1.4E-06 54.7 11.7 163 124-291 10-205 (266)
207 PRK08290 enoyl-CoA hydratase; 96.0 0.071 1.5E-06 55.3 12.0 158 130-292 17-219 (288)
208 PRK08272 enoyl-CoA hydratase; 96.0 0.09 1.9E-06 54.9 12.9 161 123-291 16-226 (302)
209 PRK08252 enoyl-CoA hydratase; 96.0 0.34 7.3E-06 49.2 16.7 157 377-554 25-196 (254)
210 PRK07658 enoyl-CoA hydratase; 96.0 0.069 1.5E-06 54.2 11.6 159 124-291 9-196 (257)
211 PRK05870 enoyl-CoA hydratase; 96.0 0.059 1.3E-06 54.6 11.0 156 129-291 15-195 (249)
212 PRK07509 enoyl-CoA hydratase; 96.0 0.074 1.6E-06 54.2 11.7 160 124-287 10-202 (262)
213 PLN02874 3-hydroxyisobutyryl-C 95.9 0.076 1.7E-06 57.3 12.2 151 123-277 17-193 (379)
214 PRK06143 enoyl-CoA hydratase; 95.9 0.1 2.2E-06 53.1 12.4 159 128-291 18-201 (256)
215 cd07023 S49_Sppa_N_C Signal pe 95.9 0.025 5.4E-07 55.7 7.6 89 144-243 16-106 (208)
216 PLN03214 probable enoyl-CoA hy 95.9 0.12 2.7E-06 53.2 13.0 159 128-291 22-210 (278)
217 PRK05870 enoyl-CoA hydratase; 95.9 0.29 6.2E-06 49.6 15.5 94 377-475 25-130 (249)
218 PRK05864 enoyl-CoA hydratase; 95.8 0.093 2E-06 54.0 11.9 160 124-291 17-212 (276)
219 COG1024 CaiD Enoyl-CoA hydrata 95.8 0.28 6.1E-06 49.8 15.1 162 370-552 15-202 (257)
220 PRK08788 enoyl-CoA hydratase; 95.8 0.085 1.8E-06 54.8 11.4 154 133-291 32-223 (287)
221 KOG1680 Enoyl-CoA hydratase [L 95.7 0.04 8.6E-07 56.2 8.1 149 132-291 52-229 (290)
222 PRK07827 enoyl-CoA hydratase; 95.7 0.5 1.1E-05 48.1 16.3 95 377-475 28-136 (260)
223 PLN02921 naphthoate synthase 95.6 0.17 3.6E-06 53.6 13.0 159 128-291 78-263 (327)
224 PRK05617 3-hydroxyisobutyryl-C 95.5 0.17 3.7E-06 53.9 12.6 151 123-277 9-188 (342)
225 PRK12478 enoyl-CoA hydratase; 95.4 0.43 9.3E-06 49.8 15.1 158 377-554 27-214 (298)
226 PRK11730 fadB multifunctional 95.4 0.52 1.1E-05 55.1 17.2 156 377-553 29-206 (715)
227 TIGR00706 SppA_dom signal pept 95.4 0.045 9.8E-07 53.9 7.2 86 146-243 14-101 (207)
228 PRK07509 enoyl-CoA hydratase; 95.3 1 2.2E-05 45.8 17.3 95 377-475 25-137 (262)
229 KOG0368 Acetyl-CoA carboxylase 95.2 0.02 4.3E-07 68.8 4.6 167 84-287 1818-2008(2196)
230 PLN02851 3-hydroxyisobutyryl-C 94.8 0.34 7.4E-06 52.8 12.4 172 112-292 40-239 (407)
231 TIGR02437 FadB fatty oxidation 94.7 1.3 2.7E-05 51.9 17.8 153 377-550 29-203 (714)
232 PRK05617 3-hydroxyisobutyryl-C 94.7 0.48 1E-05 50.4 13.3 146 377-543 25-193 (342)
233 PRK12478 enoyl-CoA hydratase; 94.7 0.32 7E-06 50.7 11.6 163 123-291 11-211 (298)
234 COG0616 SppA Periplasmic serin 94.6 0.2 4.2E-06 52.9 9.9 86 144-241 79-166 (317)
235 PLN02157 3-hydroxyisobutyryl-C 94.6 1.2 2.5E-05 48.6 16.0 160 370-552 47-234 (401)
236 PLN02157 3-hydroxyisobutyryl-C 94.5 0.54 1.2E-05 51.2 13.1 165 122-292 42-234 (401)
237 PLN02851 3-hydroxyisobutyryl-C 94.5 1.2 2.7E-05 48.5 15.8 152 377-551 64-238 (407)
238 PLN02874 3-hydroxyisobutyryl-C 94.5 1.4 2.9E-05 47.7 16.1 144 377-542 33-197 (379)
239 cd07013 S14_ClpP Caseinolytic 94.4 0.14 3.1E-06 48.6 7.5 90 138-241 5-98 (162)
240 PRK06072 enoyl-CoA hydratase; 94.2 2.8 6.1E-05 42.4 17.0 93 377-474 22-123 (248)
241 TIGR02441 fa_ox_alpha_mit fatt 94.1 0.59 1.3E-05 54.8 13.4 152 130-291 26-225 (737)
242 PRK08184 benzoyl-CoA-dihydrodi 94.0 3.1 6.7E-05 47.2 18.4 160 378-555 48-234 (550)
243 TIGR02440 FadJ fatty oxidation 94.0 0.31 6.7E-06 56.8 10.8 139 140-289 24-198 (699)
244 cd07018 S49_SppA_67K_type Sign 93.9 0.22 4.9E-06 49.6 8.2 92 140-243 24-117 (222)
245 TIGR00705 SppA_67K signal pept 93.9 0.22 4.9E-06 56.7 9.1 83 144-237 328-412 (584)
246 TIGR03200 dearomat_oah 6-oxocy 93.9 0.41 8.8E-06 51.2 10.4 148 126-277 36-213 (360)
247 PLN02988 3-hydroxyisobutyryl-C 93.6 2.2 4.8E-05 46.2 15.6 145 377-543 31-198 (381)
248 PLN02988 3-hydroxyisobutyryl-C 93.5 0.55 1.2E-05 50.8 10.7 151 123-277 15-193 (381)
249 PRK11778 putative inner membra 93.4 0.3 6.4E-06 51.7 8.4 82 148-241 111-192 (330)
250 PRK11154 fadJ multifunctional 93.1 0.97 2.1E-05 52.8 12.8 154 129-290 18-204 (708)
251 TIGR02437 FadB fatty oxidation 92.8 1.2 2.7E-05 52.0 13.1 146 138-290 27-203 (714)
252 PRK11730 fadB multifunctional 92.8 1 2.2E-05 52.7 12.4 153 129-291 19-204 (715)
253 TIGR02441 fa_ox_alpha_mit fatt 92.7 3.5 7.5E-05 48.5 16.7 140 377-537 36-198 (737)
254 TIGR03222 benzo_boxC benzoyl-C 92.7 2.8 6E-05 47.5 15.2 159 377-555 43-230 (546)
255 TIGR02440 FadJ fatty oxidation 92.3 2.6 5.6E-05 49.3 14.8 149 377-546 24-195 (699)
256 KOG1680 Enoyl-CoA hydratase [L 91.7 3.6 7.8E-05 42.3 13.1 109 366-479 43-166 (290)
257 PRK12553 ATP-dependent Clp pro 91.3 0.52 1.1E-05 46.6 6.7 90 139-242 41-134 (207)
258 PF01972 SDH_sah: Serine dehyd 91.2 0.65 1.4E-05 47.6 7.3 89 140-243 70-158 (285)
259 PRK11154 fadJ multifunctional 90.9 6.8 0.00015 45.9 16.4 150 377-547 29-201 (708)
260 cd07017 S14_ClpP_2 Caseinolyti 90.7 0.48 1E-05 45.2 5.6 91 137-241 13-107 (171)
261 PRK00277 clpP ATP-dependent Cl 90.0 1.3 2.9E-05 43.5 8.2 92 137-242 35-130 (200)
262 PF01343 Peptidase_S49: Peptid 89.5 0.56 1.2E-05 44.0 4.9 111 433-547 3-150 (154)
263 KOG0780 Signal recognition par 88.3 2.2 4.7E-05 45.9 8.7 19 124-143 128-146 (483)
264 KOG0016 Enoyl-CoA hydratase/is 88.1 0.53 1.2E-05 47.7 3.9 161 122-292 13-213 (266)
265 PRK10949 protease 4; Provision 86.1 3.1 6.7E-05 47.8 9.1 84 144-238 346-431 (618)
266 PF00574 CLP_protease: Clp pro 84.2 2.2 4.7E-05 40.9 5.8 90 138-241 21-114 (182)
267 TIGR00493 clpP ATP-dependent C 82.6 5.8 0.00013 38.7 8.2 90 139-242 32-125 (191)
268 PRK14512 ATP-dependent Clp pro 82.5 5.3 0.00011 39.2 7.8 88 140-241 30-121 (197)
269 KOG1679 Enoyl-CoA hydratase [L 78.0 4.4 9.5E-05 40.2 5.4 140 131-276 44-212 (291)
270 COG0447 MenB Dihydroxynaphthoi 74.6 7.9 0.00017 38.6 6.2 153 131-292 33-223 (282)
271 PRK12551 ATP-dependent Clp pro 72.3 14 0.00031 36.3 7.5 92 137-241 29-123 (196)
272 COG0447 MenB Dihydroxynaphthoi 72.2 36 0.00078 34.1 10.0 158 377-555 41-223 (282)
273 PRK14514 ATP-dependent Clp pro 69.0 13 0.00028 37.2 6.5 91 137-241 58-152 (221)
274 PF01343 Peptidase_S49: Peptid 65.8 3.9 8.4E-05 38.3 1.9 41 201-242 5-45 (154)
275 CHL00028 clpP ATP-dependent Cl 65.0 21 0.00046 35.1 7.0 91 137-241 34-128 (200)
276 PRK14513 ATP-dependent Clp pro 59.6 43 0.00093 33.0 8.1 92 137-242 31-126 (201)
277 KOG1682 Enoyl-CoA isomerase [L 44.7 18 0.0004 35.7 2.7 145 124-278 40-214 (287)
278 KOG0016 Enoyl-CoA hydratase/is 41.6 4.1E+02 0.009 27.4 13.4 120 364-484 13-157 (266)
279 KOG1682 Enoyl-CoA isomerase [L 39.5 1.5E+02 0.0033 29.5 8.0 56 416-475 105-167 (287)
280 COG3222 Uncharacterized protei 35.9 70 0.0015 31.2 5.1 68 382-464 88-156 (211)
281 PF11020 DUF2610: Domain of un 33.3 42 0.0009 28.2 2.7 29 136-164 40-68 (82)
282 PRK12311 rpsB 30S ribosomal pr 31.2 90 0.0019 33.2 5.5 42 118-171 144-185 (326)
283 PRK06186 hypothetical protein; 30.5 45 0.00097 33.6 3.0 32 138-170 60-91 (229)
284 COG4245 TerY Uncharacterized p 29.9 83 0.0018 30.9 4.5 48 397-444 2-51 (207)
285 COG0740 ClpP Protease subunit 26.3 2.4E+02 0.0053 27.8 7.2 77 152-242 47-126 (200)
286 KOG0781 Signal recognition par 25.0 2.5E+02 0.0055 31.6 7.7 51 124-177 405-480 (587)
287 PRK12552 ATP-dependent Clp pro 24.8 3.5E+02 0.0077 27.2 8.2 92 146-241 53-147 (222)
288 COG1797 CobB Cobyrinic acid a, 23.1 1.5E+02 0.0033 32.7 5.6 29 392-420 105-133 (451)
289 PF14307 Glyco_tran_WbsX: Glyc 23.0 1.5E+02 0.0032 31.6 5.5 45 121-171 154-198 (345)
290 COG0552 FtsY Signal recognitio 22.4 1.5E+02 0.0032 31.7 5.2 53 124-179 166-237 (340)
291 KOG1681 Enoyl-CoA isomerase [L 21.1 46 0.00099 33.6 1.1 87 202-291 126-230 (292)
292 COG2099 CobK Precorrin-6x redu 20.7 38 0.00083 34.6 0.4 89 80-169 13-101 (257)
293 TIGR03217 4OH_2_O_val_ald 4-hy 20.4 1.2E+02 0.0027 32.2 4.2 46 125-177 127-172 (333)
No 1
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=100.00 E-value=1.8e-131 Score=1057.72 Aligned_cols=513 Identities=45% Similarity=0.745 Sum_probs=484.8
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHcCCChhHHHhhHhcCCCCHHHHHHhccCCCCCceeccccccccc--cccccCCCcE
Q 048389 39 AFVRNSQVMQGLVSELQSHIQKVLGGGGESAVKRNRSRNKLLPRERIDRLTDPGSSFLELSQLAGHEL--YEETLQSGGI 116 (566)
Q Consensus 39 ~~~~~~~~~~~~~~~l~~~~~~~~~~gg~~~~~~~~~~g~l~areri~~L~D~gS~F~El~~l~~~~~--~~~~~~~~gv 116 (566)
.+..|...|..+++||+++++++..+||+++++|||++||+|+||||+.|+|+|| |.|++++++++. +.+..|++|+
T Consensus 3 ~~~~~~~~~~~~~~e~~~~~~~~~~~gg~~~~~~~~~~GkltaReRv~~LlD~Gs-f~El~~~a~~~~~~~~~~~~~dGv 81 (526)
T COG4799 3 AFGMVAMTMAEKVAELRERRAIAVAGGGEKAVEKQHGKGKLTARERVELLLDPGS-FLELGALAGHRMGGDANELPGDGV 81 (526)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHhcCCHHHhhhccccCcCcHHHHHHHHcCCCc-hhhhhhhhhcccccccccCCCCee
Confidence 5677888999999999999999999999999999999999999999999999999 999999999864 6678899999
Q ss_pred EEEEEEECCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccccccCchhhHHHHHHHHH
Q 048389 117 ITGIGPVHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQA 196 (566)
Q Consensus 117 vtG~G~I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a 196 (566)
|||+|+||||+|+|++||+||+|||+++.+++|+.|++++|.++++|+|+|+||+|+|+++| ++++.+++++|++++
T Consensus 82 VtG~G~i~Gr~~~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsgGari~~~---v~~l~g~g~iF~~~a 158 (526)
T COG4799 82 VTGIGTINGRKVFVFANDFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLNDSGGARIQEG---VPSLAGYGRIFYRNA 158 (526)
T ss_pred EEeeeeeCCeEEEEEEecCceecccccccccchHHHHHHHHHHcCCCEEEEEcccccccccC---ccccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876 678899999999999
Q ss_pred HHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEeccHHHHHhhhcccccccCCCcccccccccCcceEEEcc
Q 048389 197 IMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEISAEDLGGAAVHCKTSGVSDYFAQD 276 (566)
Q Consensus 197 ~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~GP~vv~~~~ge~v~~e~lGga~~h~~~sG~~d~v~~d 276 (566)
++|+. |||||+|+|+|+||++|+|+|+||+||++++++||++||++||.+|||+++.|+|||+++|++.||++|++++|
T Consensus 159 ~~Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~~~mfltGP~~ik~vtGe~V~~e~LGGa~vh~~~sGva~~~a~d 237 (526)
T COG4799 159 RASGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQSYMFLTGPPVIKAVTGEEVSAEELGGAQVHARKSGVADLLAED 237 (526)
T ss_pred HhccC-CCEEEEEEecCcccccccccccceEEEEcCCccEEeeCHHHHHhhcCcEeehhhccchhhhcccccceeeeecC
Confidence 99997 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhccccCCCCCcCCCCCCCCCCCCCCCChHHHhhhcccCCCCCCCHHHHhhhhccCCccccccccccc
Q 048389 277 ELHGLSLGRNIIKNLHMAGRQGEINGFQNINPEYKEPLYDVKELYSIAPADLKQSFDIRSVIARIVDGSEFDEFKKLYGT 356 (566)
Q Consensus 277 e~~a~~~~r~~ls~Lp~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~p~~~~~~~d~r~ii~~l~D~~sf~E~~~~~g~ 356 (566)
|.+|++.+|+||||||+++.+.+ |.....++|.++.++|++++|.|.+++||+|++|.+|+|+++|+|+++.|++
T Consensus 238 d~~Ai~~vr~~lsylp~~~~~~~-----p~~~~~~~~~~~~~~l~~ivP~d~~~pYDvrevI~rl~D~~~F~E~~~~~a~ 312 (526)
T COG4799 238 DEDAIELVRRLLSYLPSNNREPP-----PVVPTPDEPDRDDEELDSIVPDDPRKPYDVREVIARLVDDGEFLEFKAGYAK 312 (526)
T ss_pred HHHHHHHHHHHHHhcCccCCCCC-----CcCCCCCCcccChhhhcccCCCCCCccccHHHHHHHhcCCccHHHHHhhhCc
Confidence 99999999999999999987543 2234567899999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEECCeEEEEEEeC-----CccCHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHhcchHHHHHHHHHH
Q 048389 357 TLVTGFAKIFGQPVGIIGNN-----GILFHESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMA 431 (566)
Q Consensus 357 ~vv~G~arI~G~~Vgvvan~-----G~l~~~~a~K~ar~i~l~~~~~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a 431 (566)
++|||||||+|+|||||||| |+|++++++|+||||++|++||||||||+||||||+|.++|+.|+++||||+++|
T Consensus 313 ~iV~GfaRi~G~pVGiIANqp~~~~G~l~~~sa~KaArFI~~cd~~~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A 392 (526)
T COG4799 313 NIVTGFARIDGRPVGIIANQPRHLGGVLDIDSADKAARFIRLCDAFNIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYA 392 (526)
T ss_pred ceEEEEEEECCEEEEEEecCccccccccchHHHHHHHHHHHhhhccCCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhh
Confidence 99999999999999999995 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCEEEEEcCCCCchhhhhhccCCCCCCEEEEecCceeeccCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHH
Q 048389 432 VSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAK 511 (566)
Q Consensus 432 ~~~a~vP~isvi~g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (566)
+++++||+||||+|++||||+++||++++++|++||||+|+|+|||||+|++++++++.++..+ ++++.+.++++
T Consensus 393 ~aeatVPkitvI~rkayGga~~~M~~~~~~~~~~~AwP~a~iaVMG~egAv~i~~~k~l~~~~~-----~~~~~~~~~~~ 467 (526)
T COG4799 393 VAEATVPKITVITRKAYGGAYYVMGGKALGPDFNYAWPTAEIAVMGPEGAVSILYRKELAAAER-----PEEREALLRKQ 467 (526)
T ss_pred HhhccCCeEEEEecccccceeeeecCccCCCceeEecCcceeeecCHHHHHHHHHHHHhhcccC-----chhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999765543222 13334556778
Q ss_pred HHHHHHhh-CCHHHHHhCcccceecCchhhHHHHHHHHHHhhCCCCC---CCCCCcCCC
Q 048389 512 VVEAYEKE-GNAYYSTARLWDDGIIDPADTRKIIGFCISAALNRPVE---DTKYGVFRM 566 (566)
Q Consensus 512 l~~~~~~~-~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~~~~---~~~~~~~~~ 566 (566)
+.++|+++ ++||+++++||||+||+|++||.+|..+|+++.++++. .++||++||
T Consensus 468 ~~~eY~~~~~~p~~aa~r~~iD~vI~p~~tR~~L~~~l~~~~~k~~~~~~~kk~g~~~~ 526 (526)
T COG4799 468 LIAEYEEQFSNPYYAAERGYIDAVIDPADTRAVLGRALSALANKPVVETPLKKHGNIPL 526 (526)
T ss_pred HHHHHHHhccchHHHHHhCCCCcccCHHHHHHHHHHHHHHHhcCccccccccccCCCCC
Confidence 99999888 99999999999999999999999999999999999764 478999997
No 2
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=100.00 E-value=2.6e-129 Score=1068.81 Aligned_cols=544 Identities=82% Similarity=1.314 Sum_probs=509.1
Q ss_pred ccccccccccCCCCChHHHhcHHHHHHHHHHHHHHHHHHHcCCChhHHHhhHhcCCCCHHHHHHhccCCCCCceeccccc
Q 048389 23 ALHLSVLPDAVDRNSEAFVRNSQVMQGLVSELQSHIQKVLGGGGESAVKRNRSRNKLLPRERIDRLTDPGSSFLELSQLA 102 (566)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gg~~~~~~~~~~g~l~areri~~L~D~gS~F~El~~l~ 102 (566)
...+|+|+|++|++++.|++|+++|++.+++|+++++.++.+||+++++|||++||+++||||+.|||+||||.|+++++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~gg~~~v~r~~~~gkltaReRI~~LlD~gS~F~El~~la 105 (569)
T PLN02820 26 SFCLGVLPDGVDRNSDAFSANSKAMEGLLSELRSHVAKVRAGGGPEAVKRHRSRNKLLPRERIDRLLDPGSPFLELSQLA 105 (569)
T ss_pred cccccccccCCCCCCHHHHhCHHHHHHHHHHHHHHHHHHHhcCCHhHHHhhhhcCCCCHHHHHHHHcCCCCCeEEchhhc
Confidence 36779999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccccccCCCcEEEEEEEECCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCcccccc
Q 048389 103 GHELYEETLQSGGIITGIGPVHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVF 182 (566)
Q Consensus 103 ~~~~~~~~~~~~gvvtG~G~I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~lPlV~l~dsgGarl~~~~~~~ 182 (566)
++..|.++.+++|||||+|+||||+|+|++|||||+|||+|+.+++|+.|++++|.++++|+|+|+||+|+||++|.+.+
T Consensus 106 g~~~y~~~~~~dgVVtG~G~V~Gr~V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~~lPlV~l~DSgGarl~~q~e~~ 185 (569)
T PLN02820 106 GHELYGEDLPSGGIVTGIGPVHGRLCMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCRLPCIYLVDSGGANLPRQAEVF 185 (569)
T ss_pred cCCcccccCCCCeEEEEEEEECCEEEEEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCCccccccc
Confidence 88778888899999999999999999999999999999999999999999999999999999999999999999888877
Q ss_pred CchhhHHHHHHHHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEeccHHHHHhhhcccccccCCCcccc
Q 048389 183 PDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEISAEDLGGAAV 262 (566)
Q Consensus 183 ~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~GP~vv~~~~ge~v~~e~lGga~~ 262 (566)
+...+++++|++++++|+.+|||||||+|+|+||++|+++++|++||++++++||++||+||++++||++++|+|||+++
T Consensus 186 ~~~~~~g~if~~~~~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~aGP~vV~~~~Ge~v~~eeLGGa~~ 265 (569)
T PLN02820 186 PDRDHFGRIFYNQARMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFLAGPPLVKAATGEEVSAEDLGGADV 265 (569)
T ss_pred chHhHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEecCHHHHHhhcCcccCHHHhCCHHH
Confidence 65568899999999999878999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcceEEEcchhHHHHHHHHHHHhccccCCCCCcCCCCCCCCCCCCCCCChHHHhhhcccCCCCCCCHHHHhhhhc
Q 048389 263 HCKTSGVSDYFAQDELHGLSLGRNIIKNLHMAGRQGEINGFQNINPEYKEPLYDVKELYSIAPADLKQSFDIRSVIARIV 342 (566)
Q Consensus 263 h~~~sG~~d~v~~de~~a~~~~r~~ls~Lp~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~p~~~~~~~d~r~ii~~l~ 342 (566)
|+++||++|++++||.+++..+|++|||||.|+......+..+...+..+|.++.++|++++|.+.+++||+|++|++|+
T Consensus 266 h~~~sGv~d~~~~de~~a~~~~R~lls~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ivP~~~~~~yD~r~vi~~iv 345 (569)
T PLN02820 266 HCKVSGVSDHFAQDELHALAIGRNIVKNLHLAAKQGMENTLGSKNPEYKEPLYDVKELRGIVPADHKQSFDVRSVIARIV 345 (569)
T ss_pred hcccccccccccCchHHHHHHHHHHHHhcCcCCcccccccccCCCCCCcCcccChhhHhhccCCCCCCCCCHHHHHHHhc
Confidence 99899999999999999999999999999987632100000011123345667778999999999999999999999999
Q ss_pred cCCccccccccccceEEEEEEEECCeEEEEEEeCCccCHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHhcchH
Q 048389 343 DGSEFDEFKKLYGTTLVTGFAKIFGQPVGIIGNNGILFHESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIA 422 (566)
Q Consensus 343 D~~sf~E~~~~~g~~vv~G~arI~G~~Vgvvan~G~l~~~~a~K~ar~i~l~~~~~iPlV~l~dt~G~~~g~~~E~~g~~ 422 (566)
|+++|+|+++.||+++|||||||+|+|||||||+|++++++++|++|||++|++|+||||+|+|||||++|.++|+.|++
T Consensus 346 D~~sf~E~~~~~g~~iVtG~aRi~G~~VgvvAn~g~l~~~~a~Kaarfi~lc~~~~iPlv~l~D~pGf~~G~~~E~~G~~ 425 (569)
T PLN02820 346 DGSEFDEFKKNYGTTLVTGFARIYGQPVGIIGNNGILFTESALKGAHFIELCAQRGIPLLFLQNITGFMVGSRSEASGIA 425 (569)
T ss_pred CCceeEEecccCCCcEEEEEEEECCEEEEEEEECCccCHHHHHHHHHHHHHHHhcCCCEEEEEECCCCCCCHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCEEEEEcCCCCchhhhhhccCCCCCCEEEEecCceeeccCHHHHHHHHhhhhhhhhhhcCCCCch
Q 048389 423 KAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGAQAAGVLSQVEKDKKKKQGIEWTK 502 (566)
Q Consensus 423 ~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~vmg~e~aa~i~~~~~~~~~~~~~~~~~~ 502 (566)
++++++++++++++||+||||+|++||+|+|+||++++++|++||||+|+|+|||||+++.|+++++.+++++++++..+
T Consensus 426 ~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~aM~g~~~~~d~~~awp~A~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~ 505 (569)
T PLN02820 426 KAGAKMVMAVACAKVPKITIIVGGSFGAGNYGMCGRAYSPNFLFMWPNARIGVMGGAQAAGVLAQIERENKKRQGIQWSK 505 (569)
T ss_pred HHHHHHHHHHHhCCCCEEEEEECCcchHHHHHhcCcCCCCCEEEECCCCeEEecCHHHHHHHHHHHHhhhhhhccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999998888777777766555
Q ss_pred HHHHHHHHHHHHHHHhhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCCCCCCCCCCcCCC
Q 048389 503 QEEEMFKAKVVEAYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNRPVEDTKYGVFRM 566 (566)
Q Consensus 503 ~~~~~~~~~l~~~~~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~~~~~~~~~~~~~ 566 (566)
++.+++++++.++|+++++||+++++||||+||||+|||++|+.+|+++.+++.+.++||||||
T Consensus 506 ~~~~~~~~~~~~~~~~~~~p~~aa~~~~vD~VIdP~dTR~~l~~~l~~~~~~~~~~~~~g~~r~ 569 (569)
T PLN02820 506 EEEEAFKAKTVEAYEREANPYYSTARLWDDGVIDPADTRRVLGLCLSAALNRSPEDTKFGVFRM 569 (569)
T ss_pred cHHHHHHHHHHHHHHHhCCHHHHHHcCCcCcccCHHHHHHHHHHHHHHhhcCCCCCCCCCccCC
Confidence 5445677888899988999999999999999999999999999999999999998899999998
No 3
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=100.00 E-value=3.1e-120 Score=933.12 Aligned_cols=514 Identities=61% Similarity=1.005 Sum_probs=486.3
Q ss_pred cccccCCCCChHHHhcHHHHHHHHHHHHHHHHHHHcCCChhHHHhhHhcCCCCHHHHHHhccCCCCCceecccccccccc
Q 048389 28 VLPDAVDRNSEAFVRNSQVMQGLVSELQSHIQKVLGGGGESAVKRNRSRNKLLPRERIDRLTDPGSSFLELSQLAGHELY 107 (566)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gg~~~~~~~~~~g~l~areri~~L~D~gS~F~El~~l~~~~~~ 107 (566)
+|. .++.++..|.+|...|+..+++++ .++..+||++++++||+|||+++||||++|+|+||||.|++.++++.+|
T Consensus 17 ~l~-~~~~~s~~~~s~a~~~k~~i~~~R---~~~l~ggg~k~vd~~~srgkl~arerIdlLld~gs~Fie~d~fa~h~m~ 92 (536)
T KOG0540|consen 17 VLR-GVDELSKAMDSNAPGMKTLISQLR---FKALLGGGEKAVDAHHSRGKLLARERIDLLLDPGSPFIELDQFAGHEMY 92 (536)
T ss_pred hhc-ccchhhHHHHhccHHhhhHHHHHH---HHHHccCChhhhhhhhhhcccchhhhhhhccCCCCcceehhhhhhhhhc
Confidence 455 678999999999999999999986 7899999999999999999999999999999999999999999999999
Q ss_pred -ccccCCCcEEEEEEEECCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccccccCchh
Q 048389 108 -EETLQSGGIITGIGPVHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKE 186 (566)
Q Consensus 108 -~~~~~~~gvvtG~G~I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~lPlV~l~dsgGarl~~~~~~~~~~~ 186 (566)
++..|++++|||.|+|+||.|++++|||||+||++.+.+.+|+.|+++.|...++|+|+|+||+|+|+|+|.+.+++..
T Consensus 93 ~~e~~ps~sIvtg~g~i~gr~~~vianDfTv~ggs~y~i~~kk~lr~~e~a~~~~~p~iyL~DSgga~l~~~~es~~d~~ 172 (536)
T KOG0540|consen 93 GKEKVPSGSIVTGRGRINGRKCFVIANDFTVKGGSYYPITVKKHLRAQEIADNNRLPCIYLVDSGGARLPRQAESFADSY 172 (536)
T ss_pred cccCCCCCceEeccccccceEEEEEccCchhcccccchhhHHHHhhHHHHHhhcCCCceeEecCccccCcchhhhcCChh
Confidence 6788999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hHHHHHHHHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEeccHHHHHhhhcccccccCCCcccccccc
Q 048389 187 NFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEISAEDLGGAAVHCKT 266 (566)
Q Consensus 187 ~~~~i~~~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~GP~vv~~~~ge~v~~e~lGga~~h~~~ 266 (566)
+++++|++++-|+..++|||++|+|+|++||+|.|+|+|+++|+++++++|++||++|+++|+|+++.||||||++|+..
T Consensus 173 ~~~~If~n~n~mss~~ipqis~Img~Ct~gg~y~pAm~d~~~~vk~~s~lfl~gp~lVka~tnEevsqedlgga~~hc~~ 252 (536)
T KOG0540|consen 173 HFGRIFYNQNVMSSGNIPQISVIMGSCTAGGAYVPAMADETIMVKDTSTLFLAGPPLVKAATNEEVSQEDLGGADLHCTT 252 (536)
T ss_pred hhheeeeecceeccCCCCceeEEEecccCCceecccccceeEEecCcceEEecCCchhhhhccceeehhhcCCcceeeee
Confidence 89999998888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcceEEEcchhHHHHHHHHHHHhccccCCCCCcCCCCCCCCCCCCCCCChHHHhhhcccCCCCCCCHHHHhhhhccCCc
Q 048389 267 SGVSDYFAQDELHGLSLGRNIIKNLHMAGRQGEINGFQNINPEYKEPLYDVKELYSIAPADLKQSFDIRSVIARIVDGSE 346 (566)
Q Consensus 267 sG~~d~v~~de~~a~~~~r~~ls~Lp~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~p~~~~~~~d~r~ii~~l~D~~s 346 (566)
||+.|.-++||.+++...|.++++||....+.. ..+..++||.++.++|+.|+|.+..++||+|++|++|+|.+.
T Consensus 253 sGv~~~~~~~dv~al~~~r~~~~~l~~~~~~~a-----~~p~~~~p~d~~~~eld~Iv~~~~~~~yd~r~vi~~iVD~~~ 327 (536)
T KOG0540|consen 253 SGVADKAAKNDVHALCLLRLKVSNLPLSEIDLA-----IDPGTWDPPDYDAPELDGIVPLNLTKAYDVREVIARIVDGSR 327 (536)
T ss_pred ccchhhhhhccHHHHHHHHHHHccCCccccccc-----CCcccCCcccccchhhccccccccccccchHhHHHhhcccch
Confidence 999999999999999999999999997544322 222345889999999999999999999999999999999999
Q ss_pred cccccccccceEEEEEEEECCeEEEEEEeC-----CccCHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHhcch
Q 048389 347 FDEFKKLYGTTLVTGFAKIFGQPVGIIGNN-----GILFHESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGI 421 (566)
Q Consensus 347 f~E~~~~~g~~vv~G~arI~G~~Vgvvan~-----G~l~~~~a~K~ar~i~l~~~~~iPlV~l~dt~G~~~g~~~E~~g~ 421 (566)
|+|+++.|+++++||||||+|+||||++|| |+|+++++.|.+|||++|++++||||||+|++|||+|..+|..||
T Consensus 328 f~E~~~~y~~tlvtGfarlnG~tVgIvgnn~kf~~G~L~s~sa~KgarfIe~c~q~~IPLi~l~ni~Gfm~g~~~e~~gI 407 (536)
T KOG0540|consen 328 FFEFKPGYGDTLVTGFARLNGRTVGIVGNNPKFAGGVLFSESAVKGARFIELCDQRNIPLIFLQNITGFMVGRAAEAGGI 407 (536)
T ss_pred hhhhccccccceeeeeeeECCEEEEEeccCchhcccccchhhhhhhHHHHHHHHhcCCcEEEEEccCCccccchhhhhch
Confidence 999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEcCCCCchhhhhhccCCCCCCEEEEecCceeeccCHHHHHHHHhhhhhhhhhhcCCCCc
Q 048389 422 AKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGAQAAGVLSQVEKDKKKKQGIEWT 501 (566)
Q Consensus 422 ~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~vmg~e~aa~i~~~~~~~~~~~~~~~~~ 501 (566)
++++||+++++++++||+||+|+|++|| |.|+||++++.+|++||||+|+|+|||.++|++|+++.+.
T Consensus 408 aK~gAklv~a~a~akvpkITiit~~syG-G~y~m~sr~~~gd~~yawP~A~IavmG~~~a~~Vi~q~~~----------- 475 (536)
T KOG0540|consen 408 AKHGAKLVYAVACAKVPKITIITGGSYG-GNYAMCSRGYSGDINYAWPNARIAVMGGKQAANVIFQITL----------- 475 (536)
T ss_pred hhhhhhhhhhhhhccCceEEEEecCccC-CcccccccccCCceeEEcccceeeeccccchhhhhhhhhh-----------
Confidence 9999999999999999999999999999 7888999999999999999999999999999999987632
Q ss_pred hHHHHHHHHHHHHHHHhhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCCCCCCCCCCcCCC
Q 048389 502 KQEEEMFKAKVVEAYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNRPVEDTKYGVFRM 566 (566)
Q Consensus 502 ~~~~~~~~~~l~~~~~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~~~~~~~~~~~~~ 566 (566)
++.++++++..|.| .+||+++.+||+|+||||.+||++|+..|.++.++|.+.++||||||
T Consensus 476 -e~a~~~~~~~~E~f---~npy~a~~Rg~~D~II~p~~tR~vl~~~l~~~~~~pl~~~k~g~~~m 536 (536)
T KOG0540|consen 476 -EKAVALKAPYIEKF---GNPYYAAARGWDDGIIDPSDTRKVLGLDLQAAANKPLQTTKFGVFRM 536 (536)
T ss_pred -hhhhhhcchHHHHh---cCccHHHHhhccccccChhHhhHHHHHHHHHHhcCCCcccccccccC
Confidence 22233556666766 79999999999999999999999999999999999999999999998
No 4
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=100.00 E-value=2.6e-112 Score=930.47 Aligned_cols=499 Identities=34% Similarity=0.581 Sum_probs=457.8
Q ss_pred HHHHHHHHHHHHHcCCChhHHHhhHhcCCCCHHHHHHhccCCCCCceeccccccccc-----cccccCCCcEEEEEEEEC
Q 048389 50 LVSELQSHIQKVLGGGGESAVKRNRSRNKLLPRERIDRLTDPGSSFLELSQLAGHEL-----YEETLQSGGIITGIGPVH 124 (566)
Q Consensus 50 ~~~~l~~~~~~~~~~gg~~~~~~~~~~g~l~areri~~L~D~gS~F~El~~l~~~~~-----~~~~~~~~gvvtG~G~I~ 124 (566)
.+++|++|++.++++||+++++|||++||+++||||+.|||+|| |.|++.++.+.. +.+..+++|||||+|+||
T Consensus 2 ~~~~l~~~~~~~~~~g~~~~~~r~~~~g~l~areRi~~LlD~gs-F~E~~~~~~~~~~~~~~~~~~~~~dgvVtG~G~v~ 80 (512)
T TIGR01117 2 KIEELHEKKEKIKQGGGEKRIEKQHAQGKMTARERLALLFDPGS-FVEIDQFVKHRCTNFGMDKKELPAEGVVTGYGTID 80 (512)
T ss_pred hHHHHHHHHHHHHhcCChhhHHhHHhcCCCCHHHHHHHhcCCCc-EEEecCccccCCCCccccccCCCCceEEEEEEEEC
Confidence 57899999999999999999999999999999999999999999 999999886532 234678999999999999
Q ss_pred CEEEEEEEecCccccccCChHHHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcC
Q 048389 125 GRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIP 204 (566)
Q Consensus 125 Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP 204 (566)
||+|+|+++||||+|||+|+.+++|+.|++++|.++++|+|+|+||+|+||+++.. ++.+++++|+.++++|+ .||
T Consensus 81 Gr~v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~lPlV~l~dSgGarm~eg~~---~l~~~~~~~~~~~~~s~-~iP 156 (512)
T TIGR01117 81 GRLVYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMGAPVVGLNDSGGARIQEAVD---ALKGYGDIFYRNTIASG-VVP 156 (512)
T ss_pred CEEEEEEEECCcccccCCCHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCccccch---hhhhHHHHHHHHHHHcC-CCc
Confidence 99999999999999999999999999999999999999999999999999976654 45678999998888887 599
Q ss_pred EEEEEeccccccccccccCCCeeEEEecceeEEeccHHHHHhhhcccccccCCCcccccccccCcceEEEcchhHHHHHH
Q 048389 205 QIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEISAEDLGGAAVHCKTSGVSDYFAQDELHGLSLG 284 (566)
Q Consensus 205 ~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~GP~vv~~~~ge~v~~e~lGga~~h~~~sG~~d~v~~de~~a~~~~ 284 (566)
+|++++|+|+||++|++++||++||++++++||++||+||++++||++++|+|||+++|+.+||++|++++||.||++.+
T Consensus 157 ~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~aGP~vv~~~~Ge~v~~e~lGGa~~h~~~sGv~d~~~~de~ea~~~~ 236 (512)
T TIGR01117 157 QISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFITGPQVIKTVTGEEVTAEQLGGAMAHNSVSGVAHFIAEDDDDCIMLI 236 (512)
T ss_pred EEEEEecCCCcHHHHHHHhcCceEEeccceEEEecChHHHHhhcCcccchhhcchHHHhccccceeEEecCChHHHHHHH
Confidence 99999999999999999999999999888899999999999999999999999999999988999999999999999999
Q ss_pred HHHHHhccccCCCCCcCCCCCCCCCCCCCCCChHHHhhhcccCCCCCCCHHHHhhhhccCCccccccccccceEEEEEEE
Q 048389 285 RNIIKNLHMAGRQGEINGFQNINPEYKEPLYDVKELYSIAPADLKQSFDIRSVIARIVDGSEFDEFKKLYGTTLVTGFAK 364 (566)
Q Consensus 285 r~~ls~Lp~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~p~~~~~~~d~r~ii~~l~D~~sf~E~~~~~g~~vv~G~ar 364 (566)
|+||+|||+|+.+.| |...+.++|.++.++|++++|.+.+++||+|++|+.|+|+++|+|+++.|++++|||+||
T Consensus 237 r~~ls~lp~~~~~~~-----p~~~~~~~~~~~~~~l~~~iP~~~~~~~d~r~~i~~l~D~~sf~El~~~~g~~vVtG~gr 311 (512)
T TIGR01117 237 RRLLSFLPSNNMEKA-----PLVKTGDDPTRETPELYDLLPDNPNKPYDMRDVITAIVDNGDYLEVQPYYAPNIITCFAR 311 (512)
T ss_pred HHHHHhCCcCCCCCC-----CCCCCCCCccccchhhhhhCCCCCCCCCCHHHHHHHhCCCCceEEeeccCCCcEEEEEEE
Confidence 999999999877543 112233566677788999999999999999999999999999999999999999999999
Q ss_pred ECCeEEEEEEeC-----CccCHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCE
Q 048389 365 IFGQPVGIIGNN-----GILFHESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPK 439 (566)
Q Consensus 365 I~G~~Vgvvan~-----G~l~~~~a~K~ar~i~l~~~~~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~ 439 (566)
|+|+||+|++|| |++++++++|++||+++|+++++|||+|+|||||++|.++|+.|++++++++++++++++||+
T Consensus 312 i~G~~V~vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~ 391 (512)
T TIGR01117 312 INGQSVGIIANQPKVMAGCLDIDSSDKIARFIRFCDAFNIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPK 391 (512)
T ss_pred ECCEEEEEEEeccccccCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 999999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCchhhhhhccCCCCCCEEEEecCceeeccCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHHhh
Q 048389 440 VTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEKE 519 (566)
Q Consensus 440 isvi~g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 519 (566)
|+||+|++||||+++|+++++++|++||||+|+++||+||+++.|+++.+..+ .++ ..++.++++.++++..
T Consensus 392 isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v~~pe~a~~i~~~~~l~~-------~~~-~~~~~~~~~~~~~~~~ 463 (512)
T TIGR01117 392 VTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAVMGPAGAANIIFRKDIKE-------AKD-PAATRKQKIAEYREEF 463 (512)
T ss_pred EEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEeecCHHHHHHHHhhhhccc-------ccC-HHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999998654321 111 1123456677777778
Q ss_pred CCHHHHHhCcccceecCchhhHHHHHHHHHHhhCCCC--CCCCCCcCCC
Q 048389 520 GNAYYSTARLWDDGIIDPADTRKIIGFCISAALNRPV--EDTKYGVFRM 566 (566)
Q Consensus 520 ~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~~~--~~~~~~~~~~ 566 (566)
.+|++++++|+||+||||+|||++|+.+|+++.+++. ..++|+++|+
T Consensus 464 ~~~~~~a~~g~vD~VI~P~~tR~~l~~~l~~~~~~~~~~~~~~~~~~p~ 512 (512)
T TIGR01117 464 ANPYKAAARGYVDDVIEPKQTRPKIVNALAMLESKREKLPPKKHGNIPL 512 (512)
T ss_pred cCHHHHHhcCCCCeeEChHHHHHHHHHHHHHHhcCcccCCCCCCCCCCC
Confidence 9999999999999999999999999999999988865 3578999985
No 5
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=100.00 E-value=1.4e-108 Score=902.41 Aligned_cols=478 Identities=44% Similarity=0.694 Sum_probs=420.2
Q ss_pred hhHhcCCCCHHHHHHhccCCCCCceecccccccccccc---ccCCCcEEEEEEEECCEEEEEEEecCccccccCChHHHH
Q 048389 72 RNRSRNKLLPRERIDRLTDPGSSFLELSQLAGHELYEE---TLQSGGIITGIGPVHGRLCMFVANDPTVKGGTYFPITIK 148 (566)
Q Consensus 72 ~~~~~g~l~areri~~L~D~gS~F~El~~l~~~~~~~~---~~~~~gvvtG~G~I~Gr~v~v~a~D~tv~gGs~g~~~~~ 148 (566)
|||++||+++||||+.|+|+|| |.|++.++.+..++. ..|++|||||+|+|||++|+|+++||||+|||+|+.+++
T Consensus 1 ~~~~~Gk~~areRi~~L~D~gS-F~E~~~~~~~~~~~~~~~~~p~~gvvtG~G~I~G~~v~v~a~D~t~~gGs~g~~~~~ 79 (493)
T PF01039_consen 1 KQHARGKLTARERIDLLLDPGS-FRELGDLAGAARYKFGREKTPGDGVVTGIGKINGRPVVVIAQDFTVLGGSVGEVHGE 79 (493)
T ss_dssp HHHHTTEEEHHHHHHHHSGTTE-BEEESTTHHTTHCGGGGGH-TTTTEEEEEEEETTEEEEEEEEETTSGGGTBSHHHHH
T ss_pred CccccCCcCHHHHHHHhcCCCC-CcCchHHHhccccccccccCCCCcEEEEEEeeCCeeEEEEEeccceecCCCCcccce
Confidence 7999999999999999999999 999999887654422 279999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCCCC--CCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEeccccccccccccCCCe
Q 048389 149 KHLRAQEIAAQCKLPCIYLVDSGGA--YLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADE 226 (566)
Q Consensus 149 K~~r~~~lA~~~~lPlV~l~dsgGa--rl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~ 226 (566)
|+.|++++|.++++|+|+|.||+|+ ||++ .+.++.+++++|++++++++ +||+|++++|+|+||+||.+++||+
T Consensus 80 Ki~ra~~~A~~~~~P~v~l~dsgGa~~r~~e---g~~~l~~~g~i~~~~~~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~ 155 (493)
T PF01039_consen 80 KIARAIELALENGLPLVYLVDSGGAFLRMQE---GVESLMGMGRIFRAIARLSG-GIPQISVVTGPCTGGGAYLAALSDF 155 (493)
T ss_dssp HHHHHHHHHHHHTEEEEEEEEESSBCGGGGG---HHHHHHHHHHHHHHHHHHHT-TS-EEEEEESEEEGGGGHHHHHSSE
T ss_pred eeehHHHHHHHcCCCcEEeccccccccccch---hhhhhhhhHHHHHHHHHHhc-CCCeEEEEccccccchhhcccccCc
Confidence 9999999999999999999999999 7754 34477899999999999999 8999999999999999999999999
Q ss_pred eEEEecceeEEeccHHHHHhhhcccccccCCCcccccccccCcceEEEcchhHHHHHHHHHHHhccccC---CCCCcCCC
Q 048389 227 SVMVKGNGTIFLAGPPLVKAATGEEISAEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNLHMAG---RQGEINGF 303 (566)
Q Consensus 227 vi~v~~~a~i~~~GP~vv~~~~ge~v~~e~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~Lp~~~---~~~~~~~~ 303 (566)
+||++++++||++||++|++++||+++++++||+++|+..||++|++++||+++++.+|+||+|||.+. .+.+
T Consensus 156 ~i~~~~~a~i~l~GP~vv~~~~Ge~~~~~~lgG~~~h~~~sG~~d~v~~de~~a~~~ir~~ls~lp~~~~~~~~~~---- 231 (493)
T PF01039_consen 156 VIMVKGTARIFLAGPRVVESATGEEVDSEELGGADVHAAKSGVVDYVVDDEEDALAQIRRLLSYLPSPASNNFEDP---- 231 (493)
T ss_dssp EEEETTTCEEESSTHHHHHHHHSSCTSHHHHHBHHHHHHTSSSSSEEESSHHHHHHHHHHHHHTS-SSTSSTTSS-----
T ss_pred cccCccceEEEeccccccccccCccccchhhhhhhhhcccCCCceEEEechHHHHHHHHHhhcccccccccccCCC----
Confidence 999998899999999999999999999999999999999999999999999999999999999999433 3222
Q ss_pred CCCCCCCCCCCCChHHHhhhcccCCCCCCCHHHHhhhhccCCccccccccccceEEEEEEEECCeEEEEEEeC-----Cc
Q 048389 304 QNINPEYKEPLYDVKELYSIAPADLKQSFDIRSVIARIVDGSEFDEFKKLYGTTLVTGFAKIFGQPVGIIGNN-----GI 378 (566)
Q Consensus 304 ~~~~~~~~~p~~~~~~l~~~~p~~~~~~~d~r~ii~~l~D~~sf~E~~~~~g~~vv~G~arI~G~~Vgvvan~-----G~ 378 (566)
|.....++|.++ ++|..++|.+++++||+|++|++++|+++|+|+++.||+++|||||||+|+|||||||| |+
T Consensus 232 -p~~~~~d~~~~~-~~l~~~~P~~~~~~yD~r~ii~~i~D~~~f~E~~~~~g~~~vtg~arl~G~pVGiian~~~~~~G~ 309 (493)
T PF01039_consen 232 -PRVPTSDPPDRD-EELDSIIPDDRRRPYDMRDIIARIVDDGSFFELKPGYGKNIVTGFARLGGRPVGIIANNPRQRAGA 309 (493)
T ss_dssp --BSSSSSGSSSC-GGGHGCS-SSTTS---HHHHHHHHSGGGBEEEESTTSSTTEEEEEEEETTEEEEEEEE-TTCGGGE
T ss_pred -cccccCCCcccc-cccccccccccCCCCCcceeeEecccCCCceeccccccCCeEEeeeeeCCcceEEEEecccccccc
Confidence 122334677788 89999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cCHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhhhhccC
Q 048389 379 LFHESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGR 458 (566)
Q Consensus 379 l~~~~a~K~ar~i~l~~~~~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~am~~~ 458 (566)
|++++++|++|||++|++||||||+|+|||||++|.++|+.|+++++|++++++++++||+|+||+|++||||+++||++
T Consensus 310 ~~~~~a~K~arfi~lcd~~~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~am~~~ 389 (493)
T PF01039_consen 310 LDPDGARKAARFIRLCDAFNIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYAMCGR 389 (493)
T ss_dssp B-HHHHHHHHHHHHHHHHTT--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHHTTGG
T ss_pred CChHHHHHHHHHHHHHHhhCCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEecCceeeccCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHHhhCCHHHHHhCcccceecCch
Q 048389 459 AYSPNFMFLWPNARISVMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEKEGNAYYSTARLWDDGIIDPA 538 (566)
Q Consensus 459 ~~~~d~~~A~p~A~i~vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~aa~~g~iD~II~p~ 538 (566)
.+++|++||||+|+++||+||+++.|+++.+..+.+.++ .+..+.+++++.++++.+++|+++++++++|+||+|+
T Consensus 390 ~~~~~~~~Awp~a~~~vm~~e~a~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~D~ii~p~ 465 (493)
T PF01039_consen 390 GYGPDFVFAWPTAEIGVMGPEGAASILYRDELEAAEAEG----ADPEAQRAEKIAEYEDELSSPYRAASRGYVDDIIDPA 465 (493)
T ss_dssp GGTTSEEEEETT-EEESS-HHHHHHHHTHHHHHHSCHCC----HSHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEESSGG
T ss_pred ccchhhhhhhhcceeeecChhhhheeeehhhhhhhhccc----chhHHHHHHHHHHHHHhcCCHHHHHhcCCCCCccCHH
Confidence 999999999999999999999999999987665443333 1122235566667777779999999999999999999
Q ss_pred hhHHHHHHHHHHhhCCCCC--CCCCCcC
Q 048389 539 DTRKIIGFCISAALNRPVE--DTKYGVF 564 (566)
Q Consensus 539 ~tR~~L~~~L~~~~~~~~~--~~~~~~~ 564 (566)
|||++|+.+|+++.+++.. +++|+++
T Consensus 466 ~tR~~l~~~l~~~~~~~~~~~~rkh~~i 493 (493)
T PF01039_consen 466 ETRKVLIAALEMLWQKPRFLPWRKHRNI 493 (493)
T ss_dssp GHHHHHHHHHHHHTTSHCHHHCHSHHHC
T ss_pred HHHHHHHHHHHHHHhCcccccccccccC
Confidence 9999999999999999873 6777754
No 6
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=100.00 E-value=1.8e-49 Score=446.84 Aligned_cols=448 Identities=24% Similarity=0.329 Sum_probs=365.0
Q ss_pred HhccCCCCCceeccccccccccccccCCCcEEEEEEEE------CCEEEEEEEecCccccccCChHHHHHHHHHHHHHHh
Q 048389 86 DRLTDPGSSFLELSQLAGHELYEETLQSGGIITGIGPV------HGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQ 159 (566)
Q Consensus 86 ~~L~D~gS~F~El~~l~~~~~~~~~~~~~gvvtG~G~I------~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~ 159 (566)
++++|.++...|+...++. ...|+|.=.-++ .||.+.|++||.||+-||+|+.+..-+.++.++|++
T Consensus 1507 ELV~de~g~L~~vnR~pG~-------N~~GMVAw~~~~~TpEyP~Gr~~iVIgNDiTfqiGSFGp~ED~lF~~aselAR~ 1579 (2196)
T KOG0368|consen 1507 ELVLDENGELTEVNREPGL-------NSCGMVAWKLTVKTPEYPEGRDLIVIGNDVTFQIGSFGPREDLLFLAASELARE 1579 (2196)
T ss_pred eeeecCCCcEEEeccCCCC-------CcceeEEEEEEecCCCCCCCceEEEEeccceEeccCCCChHHHHHHHHHHHHHh
Confidence 4455544436666543221 235666544455 899999999999999999999999999999999999
Q ss_pred CCCcEEEEEcCCCCCCCccccccCc-------------------------------------------------------
Q 048389 160 CKLPCIYLVDSGGAYLPKQAEVFPD------------------------------------------------------- 184 (566)
Q Consensus 160 ~~lPlV~l~dsgGarl~~~~~~~~~------------------------------------------------------- 184 (566)
.+||.|++...+||||+..+++.+-
T Consensus 1580 ~~iPrIylaaNSGARIGlAeei~~lfkVaw~d~~~P~kgF~YlYlt~ed~~ri~~~~v~~e~~~~~GE~R~~I~~IiGke 1659 (2196)
T KOG0368|consen 1580 KGIPRIYLAANSGARIGLAEEIKPLFKVAWVDEDDPEKGFQYLYLTPEDYERIGSSVVHCEVVEESGEERLKIKAIIGKE 1659 (2196)
T ss_pred cCCCeEEEeccCccccccHHHHHHHheeeccCCCCcCCCceEEEECHHHHHHhhcccceeEEEeecCcceEEEEEEeccc
Confidence 9999999999999999876653211
Q ss_pred -------hhhHHHHHHHHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEeccHHHHHhhhcccc--ccc
Q 048389 185 -------KENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEI--SAE 255 (566)
Q Consensus 185 -------~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~GP~vv~~~~ge~v--~~e 255 (566)
+.+.|-|.-..++.- ..||++|+|+|++.|.|||++.++..+|+++ ++.|.+||.++++.++|+++ |+.
T Consensus 1660 eglGVEnL~GSGlIAGetSrAY-~ei~T~t~VT~RsVGIGAYlvRLgqR~IQve-~~~iILTGa~ALNklLGreVYTSN~ 1737 (2196)
T KOG0368|consen 1660 EGIGVENLRGSGLIAGETSRAY-NEIFTITLVTGRSVGIGAYLARLGQRIIQVE-DQHIILTGASALNKLLGREVYTSNN 1737 (2196)
T ss_pred ccccceeccccccccchhhhhh-hccceEEEEecceeeHHHHHHHHHHHHHHhc-CCceEEeCHHHHHHHhccccccccc
Confidence 011111211122222 2599999999999999999999999999987 59999999999999999997 788
Q ss_pred CCCcccccccccCcceEEEcchhHHHHHHHHHHHhccccCCCCCcCCCCCCCCCCCCCCCChHHHhhhcccCCCCCCCHH
Q 048389 256 DLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNLHMAGRQGEINGFQNINPEYKEPLYDVKELYSIAPADLKQSFDIR 335 (566)
Q Consensus 256 ~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~Lp~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~p~~~~~~~d~r 335 (566)
.|||.+++. .||++|..+.||.+++..+..||||+|.....+. |.-+|.+++++..+++|.. ..+||+|
T Consensus 1738 QLGG~qIM~-~NGVsHlTv~dDleGV~ki~~WlSY~Pa~~~~~~---------P~l~~~D~~dR~vef~p~~-q~~yD~R 1806 (2196)
T KOG0368|consen 1738 QLGGPQIMH-RNGVSHLTVSDDLEGVAKILNWLSYLPAKRNSPV---------PFLEPKDPPDRDVEFVPST-QNPYDPR 1806 (2196)
T ss_pred ccCCeEEec-cCCceEEEecccHHHHHHHHHHHHhCCcccCCCC---------CccCCCCCcccceeccCCC-CCCCCHH
Confidence 999999987 6999999999999999999999999997664322 1123334455566788886 6899999
Q ss_pred HHhhh----------hccCCccccccccccceEEEEEEEECCeEEEEEEeC--------------------------Ccc
Q 048389 336 SVIAR----------IVDGSEFDEFKKLYGTTLVTGFAKIFGQPVGIIGNN--------------------------GIL 379 (566)
Q Consensus 336 ~ii~~----------l~D~~sf~E~~~~~g~~vv~G~arI~G~~Vgvvan~--------------------------G~l 379 (566)
++|+. |||.+||.|+..+|++++|+|.||++|.||||||.. .+|
T Consensus 1807 wli~G~~~~~~~~~GlFDk~SF~Eil~~WAktVV~GRArLgGIPvGVIavEtrtve~~vPADPan~dS~e~i~q~AGQVW 1886 (2196)
T KOG0368|consen 1807 WLIAGKNDSTGWLSGLFDKGSFDEILSGWAKTVVTGRARLGGIPVGVIAVETRTVENIVPADPANLDSEEQITQEAGQVW 1886 (2196)
T ss_pred HHhcCCcCCCccccccccCccHHHHHhHHhhHheecceecCCcceEEEEEEeeeeeeeccCCCCCCCcHhhhhhcCCcee
Confidence 99984 999999999999999999999999999999999962 689
Q ss_pred CHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcC-CCCchhhhhhccC
Q 048389 380 FHESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVG-GSFGAGNYAMCGR 458 (566)
Q Consensus 380 ~~~~a~K~ar~i~l~~~~~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g-~~~Ggg~~am~~~ 458 (566)
+|++|-|.|++|...++.++||++|.|+.||+.|.++|...++++||.++.++++.+.|++.+|.. ..+.||+|+..+.
T Consensus 1887 yPdSAfKTaQAInDFNrEqLPLmIiAnwRGFSGGqkDMy~~VLkfGa~IVDaL~~YkQPv~vYIPp~gELRGGsWvVvD~ 1966 (2196)
T KOG0368|consen 1887 YPDSAFKTAQAINDFNREQLPLMIIANWRGFSGGQKDMYDQVLKFGAYIVDALRQYKQPVLVYIPPMGELRGGSWVVVDP 1966 (2196)
T ss_pred cCchHHHHHHHHhhhccccCCeEEeecccccCccchHHHHHHHHHHHHHHHHHHHhCCceEEEcCcchhhcCceEEEEcC
Confidence 999999999999999999999999999999999999999999999999999999999999999985 7789999999999
Q ss_pred CCCCCEE--EEecCceeeccCHHHHHHHHhhhhhh------------hhhhcC--CCCchHHHHHHHHHHHHHHHhh---
Q 048389 459 AYSPNFM--FLWPNARISVMGGAQAAGVLSQVEKD------------KKKKQG--IEWTKQEEEMFKAKVVEAYEKE--- 519 (566)
Q Consensus 459 ~~~~d~~--~A~p~A~i~vmg~e~aa~i~~~~~~~------------~~~~~~--~~~~~~~~~~~~~~l~~~~~~~--- 519 (566)
.+++|.+ ||-..++-||+.||+.+.|.++.+.. .++... +.+++++.+.++++|.++++..
T Consensus 1967 tIn~~~memyAD~~sRggVLEPeg~v~IKfRre~Lle~MrR~D~~y~~L~~~l~~~~ls~~~~~~l~kqLk~Re~~L~pi 2046 (2196)
T KOG0368|consen 1967 TINPDQMEMYADEESRGGVLEPEGVVEIKFRREMLLEMMRRLDPTYIKLKSSLSEAKLSPEDRKDLQKQLKEREEQLLPI 2046 (2196)
T ss_pred ccCHHHHHHHhhhhhccccccCCceEEEEeeHHHHHHHHHhcchhhhhhhhhcCccccChHHHHHHHHHHHHHHHHHHHH
Confidence 9999986 77788999999999999988765431 122222 2356666666667777665422
Q ss_pred ------------CCHHHHHhCcccceecCchhhHHHHHHHHHHhhC
Q 048389 520 ------------GNAYYSTARLWDDGIIDPADTRKIIGFCISAALN 553 (566)
Q Consensus 520 ------------~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~ 553 (566)
.++-++.+.|.|-.+.+..+.|..+.+.|....+
T Consensus 2047 Y~QisvqFAdlHDr~~RM~~kgVI~~~lew~~sRrffywrLrr~l~ 2092 (2196)
T KOG0368|consen 2047 YNQISVQFADLHDRSGRMKAKGVISKVLEWTESRRFFYWRLRRRLA 2092 (2196)
T ss_pred HHHHHHHHHHhhchhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 2334456889999999999999999988876554
No 7
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=100.00 E-value=6.2e-46 Score=378.26 Aligned_cols=209 Identities=25% Similarity=0.372 Sum_probs=188.2
Q ss_pred hcCCCCHHHHHHhccCCCCCceec-cccccccc--c----ccccCCCcEEEEEEEECCEEEEEEEecCccccccCChHHH
Q 048389 75 SRNKLLPRERIDRLTDPGSSFLEL-SQLAGHEL--Y----EETLQSGGIITGIGPVHGRLCMFVANDPTVKGGTYFPITI 147 (566)
Q Consensus 75 ~~g~l~areri~~L~D~gS~F~El-~~l~~~~~--~----~~~~~~~gvvtG~G~I~Gr~v~v~a~D~tv~gGs~g~~~~ 147 (566)
+=-++|+||||+.|||+|| |.|+ +++++... + ....++||||+|+|+|||++|+|+++||||+|||+|+.++
T Consensus 11 s~~~ltARERi~~LlD~gS-F~E~~g~~~~~~~~~~~~~~~~~~~~dGvV~G~G~I~Gr~v~v~a~D~tf~GGS~G~~~g 89 (301)
T PRK07189 11 SFIEASARERAAALLDAGS-FRELLGPFERVMSPHLPLQGIPPQFDDGVVVGKGTLDGRPVVVAAQEGRFMGGSVGEVHG 89 (301)
T ss_pred CceeCCHHHHHHHhcCCCc-ceEcccccccccCcchhhhccCCCCCCcEEEEEEEECCEEEEEEEECCCccCcCcCHHHH
Confidence 3457999999999999999 9999 77766421 1 1234789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCC-----CcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEecc--cccccccc
Q 048389 148 KKHLRAQEIAAQCK-----LPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGS--CTAGGAYI 220 (566)
Q Consensus 148 ~K~~r~~~lA~~~~-----lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~--~~GG~ay~ 220 (566)
+|+.|++++|.+.+ +|+|+|+||||+||++... ++.+++++|++++++|+. ||+|+|++|+ |+||++|+
T Consensus 90 ~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGaRlqEg~~---~L~~~a~i~~~~~~ls~~-VP~I~vv~G~~gc~GG~a~~ 165 (301)
T PRK07189 90 AKLAGALELAAEDNRNGIPTAVLLLFETGGVRLQEANA---GLAAIAEIMRAIVDLRAA-VPVIGLIGGRVGCFGGMGIA 165 (301)
T ss_pred HHHHHHHHHHHHhCCCCCCCCEEEEecCCCcCccchHH---HHHHHHHHHHHHHHHhCC-CCEEEEEcCCCCCcHHHHHH
Confidence 99999999999999 9999999999999976442 466789999999999996 9999999999 99999999
Q ss_pred ccCCCeeEEEecceeEEeccHHHHHhhhc-ccccccC-------CCcccccccccCcceEEEcchhHHHHHHHHHHHhcc
Q 048389 221 PAMADESVMVKGNGTIFLAGPPLVKAATG-EEISAED-------LGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNLH 292 (566)
Q Consensus 221 ~a~~d~vi~v~~~a~i~~~GP~vv~~~~g-e~v~~e~-------lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~Lp 292 (566)
+++||++||++ +++||++||+||++++| |+++++| |||.+.| .||++|++++||.+|++. ++++||.
T Consensus 166 a~l~D~iIm~~-~a~iglaGP~VIe~~~G~e~~d~~d~~~vw~~lGG~h~~--~sG~~D~~v~dd~~a~~~--~~~~~~~ 240 (301)
T PRK07189 166 AALCSYLIVSE-EGRLGLSGPEVIEQEAGVEEFDSRDRALVWRTTGGKHRY--LSGLADALVDDDVAAFRA--AALALLA 240 (301)
T ss_pred HhcCCEEEEEC-CcEEeccCHHHHHHhcCCcccCHHHhcccccccCcceee--ecccceEEeCCHHHHHHH--HHHHHHh
Confidence 99999999986 59999999999999999 6899999 9997555 599999999999999999 7899985
Q ss_pred c
Q 048389 293 M 293 (566)
Q Consensus 293 ~ 293 (566)
.
T Consensus 241 ~ 241 (301)
T PRK07189 241 R 241 (301)
T ss_pred c
Confidence 3
No 8
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=100.00 E-value=1.8e-44 Score=363.99 Aligned_cols=204 Identities=23% Similarity=0.358 Sum_probs=180.7
Q ss_pred CCCHHHHHHhccCCCCCceec-cccccccc-c-----ccccCCCcEEEEEEEECCEEEEEEEecCccccccCChHHHHHH
Q 048389 78 KLLPRERIDRLTDPGSSFLEL-SQLAGHEL-Y-----EETLQSGGIITGIGPVHGRLCMFVANDPTVKGGTYFPITIKKH 150 (566)
Q Consensus 78 ~l~areri~~L~D~gS~F~El-~~l~~~~~-~-----~~~~~~~gvvtG~G~I~Gr~v~v~a~D~tv~gGs~g~~~~~K~ 150 (566)
++|+||||+.|+|+|| |.|+ ++++.+.. + ....++||||+|+|+|+|++|+|+++||||+|||+|+.+++|+
T Consensus 5 ~ltAReRi~~LlD~gS-F~E~~g~~~~~~~~~l~~~~~~~~~~dgvV~G~G~I~Gr~v~v~a~D~t~~GGS~G~~~g~Ki 83 (274)
T TIGR03133 5 EANARERARGLLDAGS-FRELLGPFDRVISPHLPRQGIVPQFDDGVVVGRGTIDGKPVVVAAQEGRFQGGSVGEVHGAKI 83 (274)
T ss_pred cCCHHHHHHHhcCCCc-ceEcccccccccCcchhhhcccCCCCCeEEEEEEEECCEEEEEEEECCCccCcCCCHHHHHHH
Confidence 5899999999999999 9999 88776421 1 1345689999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-----CCCcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEecc--ccccccccccC
Q 048389 151 LRAQEIAAQ-----CKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGS--CTAGGAYIPAM 223 (566)
Q Consensus 151 ~r~~~lA~~-----~~lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~--~~GG~ay~~a~ 223 (566)
.|++++|.+ .++|+|+|+||+|+||+++.. ++.+++++|++++++|+. ||+|++++|| |+||++|.+++
T Consensus 84 ~r~~e~A~~~~~~~~~~PvV~l~dSgGaRlqEg~~---~L~~~a~i~~~~~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l 159 (274)
T TIGR03133 84 VGALRLAIEDNRKGQPTAVVLLLDTGGVRLQEANA---GLIAIAEIMRAILDARAA-VPVIGVIGGRVGCFGGMGIAAGL 159 (274)
T ss_pred HHHHHHHHhhhhccCCCCEEEEEcCCCcChhhhHH---HHHHHHHHHHHHHHHhCC-CCEEEEEeCCCCcchHHHHHHhc
Confidence 999999998 678999999999999965443 567889999999999996 9999999999 89999999999
Q ss_pred CCeeEEEecceeEEeccHHHHHhhhcc-cccccC-------CCcccccccccCcceEEEcchhHHHHHH-HHHHH
Q 048389 224 ADESVMVKGNGTIFLAGPPLVKAATGE-EISAED-------LGGAAVHCKTSGVSDYFAQDELHGLSLG-RNIIK 289 (566)
Q Consensus 224 ~d~vi~v~~~a~i~~~GP~vv~~~~ge-~v~~e~-------lGga~~h~~~sG~~d~v~~de~~a~~~~-r~~ls 289 (566)
||++||++ .++||++||+||++++|+ +++++| +||++.| .||++|++++||.+|++.. .++|.
T Consensus 160 ~D~vim~~-~a~i~~aGP~VIe~~~G~e~~~~~d~~l~~~~lGG~~~~--~sG~~D~~v~dd~~a~~~~~~~~l~ 231 (274)
T TIGR03133 160 CSYLIMTE-EGRLGLSGPEVIEQEAGVEEFDSRDRALVWRTTGGKHRF--LSGDADVLVEDDVDAFRAAVIAALA 231 (274)
T ss_pred CCEEEEeC-CcEEeccCHHHHHHhcCCCccCHHHhcccccccchHhHh--hcccceEEeCCHHHHHHHHHHHHHh
Confidence 99999976 599999999999999995 688876 9999766 4999999999999999765 34443
No 9
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=100.00 E-value=1.2e-43 Score=359.48 Aligned_cols=208 Identities=20% Similarity=0.219 Sum_probs=181.2
Q ss_pred cCCCCHHHHHHhccCCCCCceeccccccccc----------cc--------cccCCCcEEEEEEEECCEEEEEEEecCcc
Q 048389 76 RNKLLPRERIDRLTDPGSSFLELSQLAGHEL----------YE--------ETLQSGGIITGIGPVHGRLCMFVANDPTV 137 (566)
Q Consensus 76 ~g~l~areri~~L~D~gS~F~El~~l~~~~~----------~~--------~~~~~~gvvtG~G~I~Gr~v~v~a~D~tv 137 (566)
.-|+++||||+.|+|+|| |.|++.+..+.. |. +..++|+||||+|+|+|++|+|+++||+|
T Consensus 66 h~rltAreRI~~L~D~gS-F~E~~~~~~~~dpl~f~~d~~~Y~~rl~~a~~~t~~~dgVVtG~G~I~Gr~v~v~a~Dftf 144 (296)
T CHL00174 66 HLKMSSSDRIELLIDPGT-WNPMDEDMVSLDPIEFHSDEEPYKDRIDSYQKKTGLTDAVQTGIGQLNGIPVALGVMDFQF 144 (296)
T ss_pred CcCCCHHHHHHHHccCCc-cEEcCCccCcCCCccccccccchHHHHHHHHhccCCCccEEEEEEEECCEEEEEEEECCcc
Confidence 457999999999999999 999998766421 31 24678999999999999999999999999
Q ss_pred ccccCChHHHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHc-CCCcCEEEEEecccccc
Q 048389 138 KGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMS-AEGIPQIALVLGSCTAG 216 (566)
Q Consensus 138 ~gGs~g~~~~~K~~r~~~lA~~~~lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls-~~~VP~isvv~G~~~GG 216 (566)
+|||+|..+++|+.|++++|.+.++|+|+|+||||+|||+ +.+ ++++++++..+..++. ..+||+|+|++|||+||
T Consensus 145 ~gGSmG~v~geKi~ra~e~A~~~rlPlV~l~~SGGARmQE--g~~-sL~qmak~saa~~~~~~~~~vP~Isvl~gPt~GG 221 (296)
T CHL00174 145 MGGSMGSVVGEKITRLIEYATNESLPLIIVCASGGARMQE--GSL-SLMQMAKISSALYDYQSNKKLFYISILTSPTTGG 221 (296)
T ss_pred cccCcCHHHHHHHHHHHHHHHHcCCCEEEEECCCCccccc--cch-hhhhhHHHHHHHHHHHHcCCCCEEEEEcCCCchH
Confidence 9999999999999999999999999999999999999954 444 6788899855444322 34799999999999999
Q ss_pred ccccccC-CCeeEEEecceeEEeccHHHHHhhhcccccccCCCcccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 217 GAYIPAM-ADESVMVKGNGTIFLAGPPLVKAATGEEISAEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 217 ~ay~~a~-~d~vi~v~~~a~i~~~GP~vv~~~~ge~v~~e~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
++|++++ +|++|+ ++++.|||+||+||++++||+++ +++|++++|.+ +|++|.+++ ..+.-+.+.++|+++
T Consensus 222 ~aas~a~l~Diiia-e~~A~IgfAGPrVIe~t~ge~lp-e~fq~ae~l~~-~G~vD~iV~-r~~lr~~l~~ll~~~ 293 (296)
T CHL00174 222 VTASFGMLGDIIIA-EPNAYIAFAGKRVIEQTLNKTVP-EGSQAAEYLFD-KGLFDLIVP-RNLLKGVLSELFQLH 293 (296)
T ss_pred HHHHHHHcccEEEE-eCCeEEEeeCHHHHHHhcCCcCC-cccccHHHHHh-CcCceEEEc-HHHHHHHHHHHHHhh
Confidence 9999886 998774 89999999999999999999999 99999999985 999999997 456667777777765
No 10
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=100.00 E-value=1.5e-42 Score=354.42 Aligned_cols=209 Identities=23% Similarity=0.313 Sum_probs=187.2
Q ss_pred cCCCCHHHHHHhccCCCCCceecccccccc---------ccc--------cccCCCcEEEEEEEECCEEEEEEEecCccc
Q 048389 76 RNKLLPRERIDRLTDPGSSFLELSQLAGHE---------LYE--------ETLQSGGIITGIGPVHGRLCMFVANDPTVK 138 (566)
Q Consensus 76 ~g~l~areri~~L~D~gS~F~El~~l~~~~---------~~~--------~~~~~~gvvtG~G~I~Gr~v~v~a~D~tv~ 138 (566)
.-|+++||||+.|+|+|| |.|++.+.... .|. +..++++||||+|+|||++|+|++|||+|+
T Consensus 55 h~rl~areRi~~L~D~gs-F~E~~~~~~~~d~l~f~~~~~Y~~~l~~~~~~t~~~d~vVtG~g~I~G~~V~v~a~D~~f~ 133 (292)
T PRK05654 55 HMRISARERLDLLLDEGS-FVELDAELEPKDPLKFRDSKKYKDRLKAAQKKTGLKDAVVTGKGTIEGMPVVLAVMDFSFM 133 (292)
T ss_pred CeeCCHHHHHHHHccCCc-cEEecCccccCCcccCCcccccchHHHHhhhccCCCCcEEEEEEEECCEEEEEEEEecccc
Confidence 457999999999999999 99999865431 142 246799999999999999999999999999
Q ss_pred cccCChHHHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEecccccccc
Q 048389 139 GGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGA 218 (566)
Q Consensus 139 gGs~g~~~~~K~~r~~~lA~~~~lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG~a 218 (566)
|||+|..+++|+.|++++|.++++|+|+|+||||+|+++ +.+ ++++++++++++.+++..+||+|+|++|||+||++
T Consensus 134 gGS~g~~~~eKi~r~~e~A~~~~lPlV~l~dsgGarmqE--gi~-sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~a 210 (292)
T PRK05654 134 GGSMGSVVGEKIVRAVERAIEEKCPLVIFSASGGARMQE--GLL-SLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVS 210 (292)
T ss_pred cCCccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcchhh--hhh-HHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHHH
Confidence 999999999999999999999999999999999999954 444 67889999999999998899999999999999999
Q ss_pred ccccC-CCeeEEEecceeEEeccHHHHHhhhcccccccCCCcccccccccCcceEEEcchhHHHHHHHHHHHhcc
Q 048389 219 YIPAM-ADESVMVKGNGTIFLAGPPLVKAATGEEISAEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNLH 292 (566)
Q Consensus 219 y~~a~-~d~vi~v~~~a~i~~~GP~vv~~~~ge~v~~e~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~Lp 292 (566)
|++++ +|+++ ++|++.|+++||++|+++++|+++ +++|++++|+ .+|++|.|++ ..|.-..+.++|+++.
T Consensus 211 as~a~~~D~ii-a~p~A~ig~aGprvie~~~~e~lp-e~~~~ae~~~-~~G~vD~Vv~-~~e~r~~l~~~L~~~~ 281 (292)
T PRK05654 211 ASFAMLGDIII-AEPKALIGFAGPRVIEQTVREKLP-EGFQRAEFLL-EHGAIDMIVH-RRELRDTLASLLALHT 281 (292)
T ss_pred HHHHHcCCEEE-EecCcEEEecCHHHHHhhhhhhhh-hhhcCHHHHH-hCCCCcEEEC-HHHHHHHHHHHHHHHh
Confidence 99876 88766 488999999999999999999995 8999999998 6899999996 5778899999999874
No 11
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=100.00 E-value=3.8e-42 Score=349.99 Aligned_cols=209 Identities=24% Similarity=0.320 Sum_probs=186.5
Q ss_pred cCCCCHHHHHHhccCCCCCceeccccccccc---------cc--------cccCCCcEEEEEEEECCEEEEEEEecCccc
Q 048389 76 RNKLLPRERIDRLTDPGSSFLELSQLAGHEL---------YE--------ETLQSGGIITGIGPVHGRLCMFVANDPTVK 138 (566)
Q Consensus 76 ~g~l~areri~~L~D~gS~F~El~~l~~~~~---------~~--------~~~~~~gvvtG~G~I~Gr~v~v~a~D~tv~ 138 (566)
.-++++||||+.|+|+|| |.|++.+..+.. |. +..++++||||+|+|||++|+|+++||+|+
T Consensus 54 h~rl~areRi~~L~D~gs-F~E~~~~~~~~d~l~f~~~~~Y~~~l~~~~~~t~~~d~vVtG~g~I~G~~V~v~a~D~~f~ 132 (285)
T TIGR00515 54 HMRMDARERIESLLDEGS-FEEFNSHLEPKDPLKFKDSKKYKDRIAKAQKETGEKDAVVTGKGTLYGMPIVVAVFDFAFM 132 (285)
T ss_pred cCcCCHHHHHHHceeCCe-eEEeCCccccCccccCCcccchhHHHHHHhhccCCCCcEEEEEEEECCEEEEEEEEecccc
Confidence 467999999999999999 999987655321 32 245789999999999999999999999999
Q ss_pred cccCChHHHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEecccccccc
Q 048389 139 GGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGA 218 (566)
Q Consensus 139 gGs~g~~~~~K~~r~~~lA~~~~lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG~a 218 (566)
|||+|..+++|+.|++++|.++++|+|+|+||+|+||+|+. . +++++++++.++.+++..+||+|+|++|||+||++
T Consensus 133 gGSmg~~~geKi~r~~e~A~~~~lPlV~l~dSgGaRmqEg~--~-sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~a 209 (285)
T TIGR00515 133 GGSMGSVVGEKFVRAIEKALEDNCPLIIFSASGGARMQEAL--L-SLMQMAKTSAALAKMSERGLPYISVLTDPTTGGVS 209 (285)
T ss_pred CCCccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcccccch--h-HHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHHH
Confidence 99999999999999999999999999999999999996543 3 57889999999899998899999999999999999
Q ss_pred cccc-CCCeeEEEecceeEEeccHHHHHhhhcccccccCCCcccccccccCcceEEEcchhHHHHHHHHHHHhcc
Q 048389 219 YIPA-MADESVMVKGNGTIFLAGPPLVKAATGEEISAEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNLH 292 (566)
Q Consensus 219 y~~a-~~d~vi~v~~~a~i~~~GP~vv~~~~ge~v~~e~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~Lp 292 (566)
|+++ ++|+++ ++++|.|+++||+||++++||+++ +++|++++|.+ +|.+|.|+++ .+.-..+.++|+++-
T Consensus 210 as~a~~~D~ii-a~p~A~ig~aGprVie~ti~e~lp-e~~q~ae~~~~-~G~vD~iv~~-~~~r~~l~~~L~~~~ 280 (285)
T TIGR00515 210 ASFAMLGDLNI-AEPKALIGFAGPRVIEQTVREKLP-EGFQTSEFLLE-HGAIDMIVHR-PEMKKTLASLLAKLQ 280 (285)
T ss_pred HHHHhCCCEEE-EECCeEEEcCCHHHHHHHhcCccc-hhcCCHHHHHh-CCCCcEEECc-HHHHHHHHHHHHHHh
Confidence 9987 678765 577899999999999999999999 88999999984 7999999964 678899999999864
No 12
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=100.00 E-value=4.8e-37 Score=315.06 Aligned_cols=207 Identities=18% Similarity=0.245 Sum_probs=181.3
Q ss_pred hcccCCCCCCCHHHHhhhhccCCcccccccc--cc--ceEEEEEEEECCeEEEEEEeC-------------CccCHHHHH
Q 048389 323 IAPADLKQSFDIRSVIARIVDGSEFDEFKKL--YG--TTLVTGFAKIFGQPVGIIGNN-------------GILFHESAL 385 (566)
Q Consensus 323 ~~p~~~~~~~d~r~ii~~l~D~~sf~E~~~~--~g--~~vv~G~arI~G~~Vgvvan~-------------G~l~~~~a~ 385 (566)
-+++++++||+. ++|+.|+|+ |+|++.+ |+ +++|||+|||+|+||+||+|| |++++++++
T Consensus 62 ~~ar~~~Rp~~~-d~I~~l~d~--f~El~gdr~~~dd~aiV~G~ari~GrpV~VIa~d~g~~~~e~~~~~~G~~~peg~r 138 (319)
T PRK05724 62 QLARHPQRPYTL-DYIELLFTD--FTELHGDRAFADDKAIVGGLARLNGRPVMVIGHQKGRDTKEKIRRNFGMPRPEGYR 138 (319)
T ss_pred hcccCCCCCCHH-HHHHHHhhH--HHHHcCCcCCCCCCceEEEEEEECCEEEEEEEecCCccccccccccCCCCCHHHHH
Confidence 356788999995 999999984 9999988 77 899999999999999999985 889999999
Q ss_pred HHHHHHHHHhcCCCcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhhhhccCCCCCCEE
Q 048389 386 KGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFM 465 (566)
Q Consensus 386 K~ar~i~l~~~~~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~am~~~~~~~d~~ 465 (566)
|++||+++|++|++|||+|+||||+++|.++|+.|+.+++++++.+++.++||+|+||+|+++|||+++|+. +|++
T Consensus 139 Ka~R~m~lA~~f~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAla~~~----aD~v 214 (319)
T PRK05724 139 KALRLMKMAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGEGGSGGALAIGV----GDRV 214 (319)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCccHHHHHHHhc----cCee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999974 7999
Q ss_pred EEecCceeeccCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHHhhCCHHHHHhCcccceecCc--------
Q 048389 466 FLWPNARISVMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEKEGNAYYSTARLWDDGIIDP-------- 537 (566)
Q Consensus 466 ~A~p~A~i~vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~aa~~g~iD~II~p-------- 537 (566)
+|||+|.++||+||+++.|+++... ..++..+ ..+.+|..+++.|+||+||+.
T Consensus 215 ~m~~~A~~svisPEg~a~Il~~~~~-----------------~a~~aae--~~~ita~~l~~~g~iD~II~Ep~gga~~~ 275 (319)
T PRK05724 215 LMLEYSTYSVISPEGCASILWKDAS-----------------KAPEAAE--AMKITAQDLKELGIIDEIIPEPLGGAHRD 275 (319)
T ss_pred eeecCceEeecCHHHHHHHHhcCch-----------------hHHHHHH--HcCCCHHHHHHCCCceEeccCCCCCccCC
Confidence 9999999999999999999985321 0111122 234799999999999999983
Q ss_pred -----hhhHHHHHHHHHHhhCCC
Q 048389 538 -----ADTRKIIGFCISAALNRP 555 (566)
Q Consensus 538 -----~~tR~~L~~~L~~~~~~~ 555 (566)
..+++.|...|..+...+
T Consensus 276 ~~~~~~~l~~~i~~~l~~l~~~~ 298 (319)
T PRK05724 276 PEAAAAALKEALLEALAELKGLS 298 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC
Confidence 346677777777776654
No 13
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=100.00 E-value=1.2e-37 Score=306.38 Aligned_cols=210 Identities=23% Similarity=0.329 Sum_probs=185.4
Q ss_pred hcCCCCHHHHHHhccCCCCCceecccccc--c-------ccccc--------ccCCCcEEEEEEEECCEEEEEEEecCcc
Q 048389 75 SRNKLLPRERIDRLTDPGSSFLELSQLAG--H-------ELYEE--------TLQSGGIITGIGPVHGRLCMFVANDPTV 137 (566)
Q Consensus 75 ~~g~l~areri~~L~D~gS~F~El~~l~~--~-------~~~~~--------~~~~~gvvtG~G~I~Gr~v~v~a~D~tv 137 (566)
..-++++++||+.|+|+|| |.|+...-. + ..|.+ ..-.++||+|.|+|+|.|+++.++||.|
T Consensus 55 ~h~ri~A~~Ri~~llD~gs-f~el~~~l~~~dPL~F~d~k~Y~~rL~~a~~~tg~~davvtg~g~i~G~pvv~av~df~F 133 (294)
T COG0777 55 HHMRISARERLEALLDEGS-FEELDSPLEPKDPLKFPDSKKYKDRLEAARKKTGLDDAVVTGEGTINGLPVVLAVMDFAF 133 (294)
T ss_pred cccccCHHHHHHHhhCCCc-ceecccCCCcCCcccCCcchhhHHHHHHHHhhcCCCcceEEEeeEECCeEEEEEEEeccc
Confidence 4457999999999999999 999975211 1 12422 3458999999999999999999999999
Q ss_pred ccccCChHHHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEeccccccc
Q 048389 138 KGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGG 217 (566)
Q Consensus 138 ~gGs~g~~~~~K~~r~~~lA~~~~lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG~ 217 (566)
+|||+|...++||.|+++.|.+.++|+|.+..||||||| ++.+ +++||+++..++.+++.+++|+|+|+++|++||.
T Consensus 134 mgGSmGsVvGeki~ra~E~A~e~k~P~v~f~aSGGARMQ--Eg~l-SLMQMaktsaAl~~l~ea~lpyIsVLt~PTtGGV 210 (294)
T COG0777 134 MGGSMGSVVGEKITRAIERAIEDKLPLVLFSASGGARMQ--EGIL-SLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGV 210 (294)
T ss_pred cccchhHHHHHHHHHHHHHHHHhCCCEEEEecCcchhHh--HHHH-HHHHHHHHHHHHHHHHhcCCceEEEecCCCccch
Confidence 999999999999999999999999999999999999995 4555 7899999999999999999999999999999999
Q ss_pred cccccCCCeeEEEecceeEEeccHHHHHhhhcccccccCCCcccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 218 AYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEISAEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 218 ay~~a~~d~vi~v~~~a~i~~~GP~vv~~~~ge~v~~e~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
.+++++...+++++|.|.|+|+||+||+++++|+++ |+++.+++.. .+|.+|.+++. .|.-..+-.+|+.+
T Consensus 211 sASfA~lGDi~iAEP~AlIGFAGpRVIEQTire~LP-egfQ~aEfLl-ehG~iD~iv~R-~elr~tla~ll~~~ 281 (294)
T COG0777 211 SASFAMLGDIIIAEPGALIGFAGPRVIEQTIREKLP-EGFQTAEFLL-EHGMIDMIVHR-DELRTTLASLLAKL 281 (294)
T ss_pred hHhHHhccCeeecCcccccccCcchhhhhhhcccCC-cchhhHHHHH-HcCCceeeecH-HHHHHHHHHHHHHh
Confidence 999887666788999999999999999999999999 8999999998 69999999976 55666666666655
No 14
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=100.00 E-value=1.3e-36 Score=311.60 Aligned_cols=205 Identities=20% Similarity=0.229 Sum_probs=180.5
Q ss_pred ccCCCCCCCHHHHhhhhccCCcccccccccc----ceEEEEEEEECCeEEEEEEeC-------------CccCHHHHHHH
Q 048389 325 PADLKQSFDIRSVIARIVDGSEFDEFKKLYG----TTLVTGFAKIFGQPVGIIGNN-------------GILFHESALKG 387 (566)
Q Consensus 325 p~~~~~~~d~r~ii~~l~D~~sf~E~~~~~g----~~vv~G~arI~G~~Vgvvan~-------------G~l~~~~a~K~ 387 (566)
.+++++|||+ ++|..|+|+ |+|++.+|+ +++|||+|+|+|+||+||+|| |++++++++|+
T Consensus 64 ar~~~Rp~~~-d~i~~l~d~--f~EL~gd~~~~dd~aiVtG~ari~GrpV~VIa~d~g~~~~e~~~~~~G~~~p~g~rKa 140 (316)
T TIGR00513 64 ARHPDRPYTL-DYIELIFDD--FFELAGDRAYADDKAIVGGIARLDGRPVVVIGHQKGRDTKEKLRRNFGMPAPEGYRKA 140 (316)
T ss_pred HhCCCCCchH-HHHHHHhhh--heeeccccCCCCCCceEEEEEEECCEEEEEEEecCCccccccccccCCCCCHHHHHHH
Confidence 4677899999 999999995 999999887 899999999999999999996 88999999999
Q ss_pred HHHHHHHhcCCCcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhhhhccCCCCCCEEEE
Q 048389 388 AHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFL 467 (566)
Q Consensus 388 ar~i~l~~~~~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~am~~~~~~~d~~~A 467 (566)
+||+++|++|++|||+|+||||+++|..+|..|+.+++++++.+++..+||+|+||+|+++|||+++++ .+|+++|
T Consensus 141 ~R~m~lA~~f~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGeggsGGAla~~----~aD~v~m 216 (316)
T TIGR00513 141 LRLMKMAERFKMPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGEGGSGGALAIG----VGDKVNM 216 (316)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecccccHHHhhhc----cCCEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999886 3699999
Q ss_pred ecCceeeccCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHHhhCCHHHHHhCcccceecCc----------
Q 048389 468 WPNARISVMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEKEGNAYYSTARLWDDGIIDP---------- 537 (566)
Q Consensus 468 ~p~A~i~vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~aa~~g~iD~II~p---------- 537 (566)
||++.++||+||+++.|+++... +++...++ .+.+|+.++++|+||+||+.
T Consensus 217 ~~~a~~sVisPEg~a~Il~kd~~------------------~a~~aae~-~~~ta~~l~~~G~iD~II~ep~~ga~~~~~ 277 (316)
T TIGR00513 217 LEYSTYSVISPEGCAAILWKDAS------------------KAPKAAEA-MKITAPDLKELGLIDSIIPEPLGGAHRNPL 277 (316)
T ss_pred ecCceEEecCHHHHHHHhccchh------------------hHHHHHHH-ccCCHHHHHHCCCCeEeccCCCCccccCHH
Confidence 99999999999999999985321 01112222 34689999999999999982
Q ss_pred ---hhhHHHHHHHHHHhhCCC
Q 048389 538 ---ADTRKIIGFCISAALNRP 555 (566)
Q Consensus 538 ---~~tR~~L~~~L~~~~~~~ 555 (566)
+.+++.|...|+.+...+
T Consensus 278 ~~~~~~~~~~~~~l~~l~~~~ 298 (316)
T TIGR00513 278 AAAASLKEQLLADLATLDQLS 298 (316)
T ss_pred HHHHHHHHHHHHHHHHHHCCC
Confidence 346677777787777654
No 15
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=100.00 E-value=1.8e-36 Score=301.35 Aligned_cols=196 Identities=20% Similarity=0.173 Sum_probs=170.9
Q ss_pred HHHHhhhhccCCccccccccccceEEEEEEEECCeEEEEEEeC--CccCHHHHHHHHHHHHHH-h-cCCCcEEEEEecCC
Q 048389 334 IRSVIARIVDGSEFDEFKKLYGTTLVTGFAKIFGQPVGIIGNN--GILFHESALKGAHFIELC-T-QRKIPLVFLQNITG 409 (566)
Q Consensus 334 ~r~ii~~l~D~~sf~E~~~~~g~~vv~G~arI~G~~Vgvvan~--G~l~~~~a~K~ar~i~l~-~-~~~iPlV~l~dt~G 409 (566)
.+++|+.|+|+++|+|+++ ++|||+|||+|+||+||+|+ ..++.+++.|+++|+.+| + +|++|||+|+||||
T Consensus 2 ~~~~l~~l~d~~~~~e~~~----~vv~G~arl~G~~V~vIa~~~~~~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG 77 (238)
T TIGR03134 2 GRDWLAALFPNGHEVAGDP----GVLVGSAELAGGKVTVIGVVPDAEVGLDEALALAQAVLDVIEADDKRPIVVLVDTPS 77 (238)
T ss_pred HHHHHHHHcCCCcEEecCC----cEEEEEEEECCEEEEEEEECCCCcCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 4789999999999999874 89999999999999999999 378999999999999996 5 59999999999999
Q ss_pred CCCchHHHhcchHHHHHHHHHHHHcCC---CCEEEEEcCCCCchhhhhhccCCCCCCEEEEecCceeeccCHHHHHHHHh
Q 048389 410 FMVGSRSEANGIAKAGAKMVMAVSCAK---VPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGAQAAGVLS 486 (566)
Q Consensus 410 ~~~g~~~E~~g~~~~~a~~~~a~~~a~---vP~isvi~g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~vmg~e~aa~i~~ 486 (566)
|++|.++|+.|+.+++|++++++++++ ||+|+||+|++||||+++| ++++|.+||||+++|+||+||++++|++
T Consensus 78 ~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lam---g~~ad~v~Alp~A~i~vm~~e~aa~I~~ 154 (238)
T TIGR03134 78 QAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAH---GLQADRIIALPGAMVHVMDLESMARVTK 154 (238)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHH---ccCcCeEEEcCCcEEEecCHHHHHHHHc
Confidence 999999999999999999999999877 9999999999999999999 4679999999999999999999999998
Q ss_pred hhhhhhhhhcCCCCchHHHHHHHHHHHHHHHh-hCCHHHHHhCcccceecCchh---hHHHHHHHHHHhhC
Q 048389 487 QVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEK-EGNAYYSTARLWDDGIIDPAD---TRKIIGFCISAALN 553 (566)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~aa~~g~iD~II~p~~---tR~~L~~~L~~~~~ 553 (566)
+. .++ .+++.+.|.. ..+++..+++|+||+||+|.+ +.+.|...++.+..
T Consensus 155 ~~-------------~~~----~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~~~~~~~~~~~~~~~~~~~~ 208 (238)
T TIGR03134 155 RS-------------VEE----LEALAKSSPVFAPGIENFVKLGGVHALLDVADADAPAAQLAAVLAALAA 208 (238)
T ss_pred cC-------------HhH----HHHHHHhhhhhccCHHHHHhCCCccEEeCCCCcccHHHHHHHHHHhhhh
Confidence 43 111 2334444432 368889999999999999866 45677777776654
No 16
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=100.00 E-value=1.1e-35 Score=298.60 Aligned_cols=204 Identities=21% Similarity=0.237 Sum_probs=176.5
Q ss_pred CCCCCCHHHHhhhhccCCccccccc--cccc--eEEEEEEEECCeEEEEEEeC-------------CccCHHHHHHHHHH
Q 048389 328 LKQSFDIRSVIARIVDGSEFDEFKK--LYGT--TLVTGFAKIFGQPVGIIGNN-------------GILFHESALKGAHF 390 (566)
Q Consensus 328 ~~~~~d~r~ii~~l~D~~sf~E~~~--~~g~--~vv~G~arI~G~~Vgvvan~-------------G~l~~~~a~K~ar~ 390 (566)
...+..+|++|+.|+|+ |+|++. .|++ ++|||+|+|+|+||+|++|| |++++++++|++||
T Consensus 13 ~~~r~~are~I~~L~D~--F~El~g~~~~~~d~~vItG~gri~Gr~V~via~~~~~~~~d~~~~~~G~~~~~g~rKa~R~ 90 (256)
T PRK12319 13 DQGRLTTLDYATLIFDD--FMELHGDRHFRDDGAVVGGIGYLAGQPVTVVGIQKGKNLQDNLKRNFGQPHPEGYRKALRL 90 (256)
T ss_pred cCCCCCHHHHHHHhCch--heeccCCCCCCCCCcEEEEEEEECCEEEEEEEeccCCccccceeeeCCCCCHHHHHHHHHH
Confidence 34667899999999997 999985 3664 69999999999999999972 89999999999999
Q ss_pred HHHHhcCCCcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhhhhccCCCCCCEEEEecC
Q 048389 391 IELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPN 470 (566)
Q Consensus 391 i~l~~~~~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~am~~~~~~~d~~~A~p~ 470 (566)
+++|++|++|||+|+||||+.+|.++|..|+.+++++++.+++..+||+|+||+|+++|||+|+|+ .+|+++|||+
T Consensus 91 ~~lA~~~~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA~a~~----~~D~v~m~~~ 166 (256)
T PRK12319 91 MKQAEKFGRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALA----VADQVWMLEN 166 (256)
T ss_pred HHHHHHcCCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCcCcHHHHHhh----cCCEEEEecC
Confidence 999999999999999999999999999999999999999999999999999999999999999996 4799999999
Q ss_pred ceeeccCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHHhhCCHHHHHhCcccceecCch---------hhH
Q 048389 471 ARISVMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEKEGNAYYSTARLWDDGIIDPA---------DTR 541 (566)
Q Consensus 471 A~i~vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~aa~~g~iD~II~p~---------~tR 541 (566)
+.++||+||+++.|+++... +++...++. +.+|+.++++|+||+||++. .++
T Consensus 167 a~~~v~~pe~~a~il~~~~~------------------~a~~aa~~~-~~~a~~l~~~g~iD~ii~e~~~~~~~~~~~~~ 227 (256)
T PRK12319 167 TMYAVLSPEGFASILWKDGS------------------RATEAAELM-KITAGELLEMGVVDKVIPEHGYFSSEIIDMIK 227 (256)
T ss_pred ceEEEcCHHHHHHHHhcCcc------------------cHHHHHHHc-CCCHHHHHHCCCCcEecCCCCCCHHHHHHHHH
Confidence 99999999999999985311 011112222 46999999999999999852 367
Q ss_pred HHHHHHHHHhhCCCC
Q 048389 542 KIIGFCISAALNRPV 556 (566)
Q Consensus 542 ~~L~~~L~~~~~~~~ 556 (566)
+.|...|..+...+.
T Consensus 228 ~~~~~~l~~l~~~~~ 242 (256)
T PRK12319 228 KNLIEELAQLSQKPL 242 (256)
T ss_pred HHHHHHHHHHHCCCH
Confidence 777788877776543
No 17
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=100.00 E-value=8.5e-35 Score=297.44 Aligned_cols=201 Identities=20% Similarity=0.257 Sum_probs=173.3
Q ss_pred hhhcc-cCCCCCCCHHHHhhhhccCCcccccccc--------------c-------------cceEEEEEEEECCeEEEE
Q 048389 321 YSIAP-ADLKQSFDIRSVIARIVDGSEFDEFKKL--------------Y-------------GTTLVTGFAKIFGQPVGI 372 (566)
Q Consensus 321 ~~~~p-~~~~~~~d~r~ii~~l~D~~sf~E~~~~--------------~-------------g~~vv~G~arI~G~~Vgv 372 (566)
+.+|| .+++.++.+|++|+.|+|++||.|+... | +.++|||+|+|+|++|+|
T Consensus 46 ~~vc~~c~~h~rl~areRi~~L~D~gsF~E~~~~~~~~d~l~f~~~~~Y~~~l~~~~~~t~~~d~vVtG~g~I~G~~V~v 125 (292)
T PRK05654 46 LNVCPKCGHHMRISARERLDLLLDEGSFVELDAELEPKDPLKFRDSKKYKDRLKAAQKKTGLKDAVVTGKGTIEGMPVVL 125 (292)
T ss_pred CCCCCCCCCCeeCCHHHHHHHHccCCccEEecCccccCCcccCCcccccchHHHHhhhccCCCCcEEEEEEEECCEEEEE
Confidence 46899 4999999999999999999999999751 2 369999999999999999
Q ss_pred EEeC-----CccCHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHhcchHH--HHHHHH---HHHHcCCCCEEEE
Q 048389 373 IGNN-----GILFHESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAK--AGAKMV---MAVSCAKVPKVTI 442 (566)
Q Consensus 373 van~-----G~l~~~~a~K~ar~i~l~~~~~iPlV~l~dt~G~~~g~~~E~~g~~~--~~a~~~---~a~~~a~vP~isv 442 (566)
++|| |++++..++|++|++++|+++++|||+|+|++|+ .+++|+.. .++++. ..+++++||+|+|
T Consensus 126 ~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~~lPlV~l~dsgGa-----rmqEgi~sL~~~ak~~~a~~~~~~a~vP~IsV 200 (292)
T PRK05654 126 AVMDFSFMGGSMGSVVGEKIVRAVERAIEEKCPLVIFSASGGA-----RMQEGLLSLMQMAKTSAALKRLSEAGLPYISV 200 (292)
T ss_pred EEEecccccCCccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCc-----chhhhhhHHHhHHHHHHHHHHHHcCCCCEEEE
Confidence 9998 9999999999999999999999999999999998 45666654 567754 5577889999999
Q ss_pred EcCCCCchhhhhhccCCCCCCEEEEecCceeeccCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHHhhCCH
Q 048389 443 IVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEKEGNA 522 (566)
Q Consensus 443 i~g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 522 (566)
|+|++|||+++.+ ++.+|+++|||+|+|+|+||+++.+++ .+++++.| .+|
T Consensus 201 v~gpt~GG~aas~---a~~~D~iia~p~A~ig~aGprvie~~~-----------------------~e~lpe~~---~~a 251 (292)
T PRK05654 201 LTDPTTGGVSASF---AMLGDIIIAEPKALIGFAGPRVIEQTV-----------------------REKLPEGF---QRA 251 (292)
T ss_pred EeCCCchHHHHHH---HHcCCEEEEecCcEEEecCHHHHHhhh-----------------------hhhhhhhh---cCH
Confidence 9999999976655 446799999999999999998765543 12344444 589
Q ss_pred HHHHhCcccceecCchhhHHHHHHHHHHhhCCC
Q 048389 523 YYSTARLWDDGIIDPADTRKIIGFCISAALNRP 555 (566)
Q Consensus 523 ~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~~ 555 (566)
++++++|+||.||+|+|||++|.++|+++..++
T Consensus 252 e~~~~~G~vD~Vv~~~e~r~~l~~~L~~~~~~~ 284 (292)
T PRK05654 252 EFLLEHGAIDMIVHRRELRDTLASLLALHTKQP 284 (292)
T ss_pred HHHHhCCCCcEEECHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999987664
No 18
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=100.00 E-value=2.2e-34 Score=293.25 Aligned_cols=203 Identities=19% Similarity=0.235 Sum_probs=173.9
Q ss_pred Hhhhcc-cCCCCCCCHHHHhhhhccCCcccccccc---------------------------ccceEEEEEEEECCeEEE
Q 048389 320 LYSIAP-ADLKQSFDIRSVIARIVDGSEFDEFKKL---------------------------YGTTLVTGFAKIFGQPVG 371 (566)
Q Consensus 320 l~~~~p-~~~~~~~d~r~ii~~l~D~~sf~E~~~~---------------------------~g~~vv~G~arI~G~~Vg 371 (566)
-+.+|| .+++.++++|++|+.|+|++||.|+... .+.++|||+|+|+|++|+
T Consensus 44 ~~~vc~~c~~h~rl~areRi~~L~D~gsF~E~~~~~~~~d~l~f~~~~~Y~~~l~~~~~~t~~~d~vVtG~g~I~G~~V~ 123 (285)
T TIGR00515 44 NLEVCPKCDHHMRMDARERIESLLDEGSFEEFNSHLEPKDPLKFKDSKKYKDRIAKAQKETGEKDAVVTGKGTLYGMPIV 123 (285)
T ss_pred hCCCCCCCCCcCcCCHHHHHHHceeCCeeEEeCCccccCccccCCcccchhHHHHHHhhccCCCCcEEEEEEEECCEEEE
Confidence 357899 5999999999999999999999999531 135999999999999999
Q ss_pred EEEeC-----CccCHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHhcchHHHHHHH---HHHHHcCCCCEEEEE
Q 048389 372 IIGNN-----GILFHESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKM---VMAVSCAKVPKVTII 443 (566)
Q Consensus 372 vvan~-----G~l~~~~a~K~ar~i~l~~~~~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~---~~a~~~a~vP~isvi 443 (566)
|+++| |+++...++|++|++++|.++++|||+|+|++|+. .+|....+.++++. +..++++++|+|+|+
T Consensus 124 v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~~lPlV~l~dSgGaR---mqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv 200 (285)
T TIGR00515 124 VAVFDFAFMGGSMGSVVGEKFVRAIEKALEDNCPLIIFSASGGAR---MQEALLSLMQMAKTSAALAKMSERGLPYISVL 200 (285)
T ss_pred EEEEeccccCCCccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcc---cccchhHHHhHHHHHHHHHHHHcCCCCEEEEE
Confidence 99998 99999999999999999999999999999999994 36655566677884 456778899999999
Q ss_pred cCCCCchhhhhhccCCCCCCEEEEecCceeeccCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHHhhCCHH
Q 048389 444 VGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEKEGNAY 523 (566)
Q Consensus 444 ~g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 523 (566)
++++|||+++.+ ++.+|+++|||+|+|+++||++..+++ .+++++.| ++|+
T Consensus 201 ~gpt~GG~aas~---a~~~D~iia~p~A~ig~aGprVie~ti-----------------------~e~lpe~~---q~ae 251 (285)
T TIGR00515 201 TDPTTGGVSASF---AMLGDLNIAEPKALIGFAGPRVIEQTV-----------------------REKLPEGF---QTSE 251 (285)
T ss_pred eCCcchHHHHHH---HhCCCEEEEECCeEEEcCCHHHHHHHh-----------------------cCccchhc---CCHH
Confidence 999999976644 346799999999999999999644332 23445544 5999
Q ss_pred HHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 524 YSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 524 ~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
+++++|+||.||+|+|||++|+++|+++..+
T Consensus 252 ~~~~~G~vD~iv~~~~~r~~l~~~L~~~~~~ 282 (285)
T TIGR00515 252 FLLEHGAIDMIVHRPEMKKTLASLLAKLQNL 282 (285)
T ss_pred HHHhCCCCcEEECcHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999998754
No 19
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=100.00 E-value=9.1e-34 Score=296.08 Aligned_cols=200 Identities=17% Similarity=0.173 Sum_probs=173.8
Q ss_pred CCCCHHHHhhhhccCCcccccccccc----ceEEEEEEEECCeEEEEEEeC-------------CccCHHHHHHHHHHHH
Q 048389 330 QSFDIRSVIARIVDGSEFDEFKKLYG----TTLVTGFAKIFGQPVGIIGNN-------------GILFHESALKGAHFIE 392 (566)
Q Consensus 330 ~~~d~r~ii~~l~D~~sf~E~~~~~g----~~vv~G~arI~G~~Vgvvan~-------------G~l~~~~a~K~ar~i~ 392 (566)
.+....++|..|+|+ |+|++.+|+ +++|||+|+|+|+||+||+|| |++++++++|++||++
T Consensus 138 ~RP~~~d~I~~i~dd--f~EL~Gdr~~~dD~aIVtG~grI~GrpV~VIandkg~~~ke~~~rnfG~~~peGyRKAlR~mk 215 (431)
T PLN03230 138 NRPTFLDHVLNMTDK--WVELHGDRAGFDDPAIVCGIGSMEGMSFMFIGHQKGRNTKENIYRNFAMPQPNGYRKALRFMR 215 (431)
T ss_pred CCCCHHHHHHHhhhH--HhhhcCcccCCCCCCeEEEEEEECCEEEEEEEeccCcccccccccCCCCCCHHHHHHHHHHHH
Confidence 334688999999996 999999998 999999999999999999997 8899999999999999
Q ss_pred HHhcCCCcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhhhhccCCCCCCEEEEecCce
Q 048389 393 LCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNAR 472 (566)
Q Consensus 393 l~~~~~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~am~~~~~~~d~~~A~p~A~ 472 (566)
+|++|++|||+|+||||+.+|..+|..|+.+++++++++++..+||+|+||+|++++||+++++. +|+++|||+|.
T Consensus 216 lAekf~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGAlalg~----aD~VlMle~A~ 291 (431)
T PLN03230 216 HAEKFGFPILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVIGEGGSGGALAIGC----GNRMLMMENAV 291 (431)
T ss_pred HHHHcCCCEEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHHhhc----CCEEEEecCCE
Confidence 99999999999999999999999999999999999999999999999999999999999888753 59999999999
Q ss_pred eeccCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHHhhCCHHHHHhCcccceecCc-------------hh
Q 048389 473 ISVMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEKEGNAYYSTARLWDDGIIDP-------------AD 539 (566)
Q Consensus 473 i~vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~aa~~g~iD~II~p-------------~~ 539 (566)
++||+||+++.|+++.... +++ ..+ ..+.+|..+.+.|+||+||+. +.
T Consensus 292 ysVisPEgaAsILwkd~~~----------A~e-------AAe--alkitA~dL~~~GiID~II~Ep~ggAh~d~~~~~~~ 352 (431)
T PLN03230 292 YYVASPEACAAILWKSAAA----------APK-------AAE--ALRITAAELVKLGVVDEIVPEPLGGAHSDPLQASKN 352 (431)
T ss_pred EEecCHHHHHHHHhccccc----------hHH-------HHH--HcCCCHHHHHhCCCCeEeccCCCCCcccCHHHHHHH
Confidence 9999999999999964221 111 111 125799999999999999983 33
Q ss_pred hHHHHHHHHHHhhCC
Q 048389 540 TRKIIGFCISAALNR 554 (566)
Q Consensus 540 tR~~L~~~L~~~~~~ 554 (566)
+++.|...|..+...
T Consensus 353 l~~~i~~~l~~L~~~ 367 (431)
T PLN03230 353 IKEVILRHMKELMKM 367 (431)
T ss_pred HHHHHHHHHHHHHCC
Confidence 566677777766654
No 20
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=100.00 E-value=3.1e-33 Score=286.55 Aligned_cols=201 Identities=18% Similarity=0.161 Sum_probs=175.9
Q ss_pred CCCCHHHHhhhhccCCcccccccccc----ceEEEEEEEECCeEEEEEEeC-------------CccCHHHHHHHHHHHH
Q 048389 330 QSFDIRSVIARIVDGSEFDEFKKLYG----TTLVTGFAKIFGQPVGIIGNN-------------GILFHESALKGAHFIE 392 (566)
Q Consensus 330 ~~~d~r~ii~~l~D~~sf~E~~~~~g----~~vv~G~arI~G~~Vgvvan~-------------G~l~~~~a~K~ar~i~ 392 (566)
.+...+++|+.|+|+ |+|++.+|+ +++|+|+|||+|+||+|++|| |++++++++|++||++
T Consensus 71 ~Rp~~~d~i~~l~d~--f~El~gd~~~~dd~avV~Glgri~GrpV~VIa~dkg~~~~e~~~~~~G~~~p~g~rKa~Rlm~ 148 (322)
T CHL00198 71 ERPTTLDYIPYILDE--WIELHGDRGGSDDPALVGGIGKINGRTIVFLGHQRGRNTKENVLRNFGMPSPGGYRKALRLMK 148 (322)
T ss_pred CCCCHHHHHHHHhHH--HHHHccccccCCCCceEEEEEEECCEEEEEEEecCCccchhhhhhcCCCCCHHHHHHHHHHHH
Confidence 445789999999996 999999997 999999999999999999996 7889999999999999
Q ss_pred HHhcCCCcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhhhhccCCCCCCEEEEecCce
Q 048389 393 LCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNAR 472 (566)
Q Consensus 393 l~~~~~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~am~~~~~~~d~~~A~p~A~ 472 (566)
+|++|++|||+|+||||+.+|..+|..|+.+++++++.+++..+||+|+||+|+++|||+++++. +|+++|||++.
T Consensus 149 lA~~f~lPIItlvDTpGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGeggsGGAlal~~----aD~V~m~e~a~ 224 (322)
T CHL00198 149 HANKFGLPILTFIDTPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGI----GDSIMMLEYAV 224 (322)
T ss_pred HHHHcCCCEEEEEeCCCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCcccHHHHHhhhc----CCeEEEeCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999998873 79999999999
Q ss_pred eeccCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHHhhCCHHHHHhCcccceecCc-------------hh
Q 048389 473 ISVMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEKEGNAYYSTARLWDDGIIDP-------------AD 539 (566)
Q Consensus 473 i~vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~aa~~g~iD~II~p-------------~~ 539 (566)
++||+||+++.|+++.... . .+..+. -..+|....+.|.||+||+. +.
T Consensus 225 ~sVisPEg~a~Il~~d~~~----------a-------~~aA~~--~~ita~dL~~~giiD~ii~Ep~ggah~~~~~~~~~ 285 (322)
T CHL00198 225 YTVATPEACAAILWKDSKK----------S-------LDAAEA--LKITSEDLKVLGIIDEIIPEPIGGAQADPASASKI 285 (322)
T ss_pred EEecCHHHHHHHHhcchhh----------H-------HHHHHH--cCCCHHHHHhCCCCeEeccCCCCccccCHHHHHHH
Confidence 9999999999999964321 0 111111 23689999999999999982 34
Q ss_pred hHHHHHHHHHHhhCCC
Q 048389 540 TRKIIGFCISAALNRP 555 (566)
Q Consensus 540 tR~~L~~~L~~~~~~~ 555 (566)
+++.|...|..+...+
T Consensus 286 l~~~~~~~l~~l~~~~ 301 (322)
T CHL00198 286 LKKKLIRQLDFLKILS 301 (322)
T ss_pred HHHHHHHHHHHHHCCC
Confidence 6677777777777654
No 21
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=99.97 E-value=1.2e-30 Score=286.77 Aligned_cols=197 Identities=22% Similarity=0.225 Sum_probs=170.9
Q ss_pred CHHHHhhhhccCCcccccccccc----ceEEEEEEEECCeEEEEEEeC-------------CccCHHHHHHHHHHHHHHh
Q 048389 333 DIRSVIARIVDGSEFDEFKKLYG----TTLVTGFAKIFGQPVGIIGNN-------------GILFHESALKGAHFIELCT 395 (566)
Q Consensus 333 d~r~ii~~l~D~~sf~E~~~~~g----~~vv~G~arI~G~~Vgvvan~-------------G~l~~~~a~K~ar~i~l~~ 395 (566)
...++|..++|+ |+|++.+|+ +++|||+|||+|+||+||++| |++++++++|++||+++|+
T Consensus 162 ~~~Dyi~~i~dd--f~EL~Gdr~~~dD~aIVtGlGRIdGrpV~VIAndkg~~tke~~~rnfG~~~peGyRKAlRlmkLAe 239 (762)
T PLN03229 162 TFLDHIFNITDK--FVELHGDRAGYDDPAIVTGIGTIDGKRYMFIGHQKGRNTKENIMRNFGMPTPHGYRKALRMMYYAD 239 (762)
T ss_pred cHHHHHHHHHHH--HHHhcCcccCCCCCCeEEEEEEECCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence 577888888886 999999877 899999999999999999996 7889999999999999999
Q ss_pred cCCCcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhhhhccCCCCCCEEEEecCceeec
Q 048389 396 QRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISV 475 (566)
Q Consensus 396 ~~~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~v 475 (566)
+|++|||+|+||||+.+|..+|..|+.+++++++.+++..+||+|+||+|+++|||+|+++. +|+++|||+|.++|
T Consensus 240 kfgLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~----aD~VlMle~A~~sV 315 (762)
T PLN03229 240 HHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGC----ANKLLMLENAVFYV 315 (762)
T ss_pred HcCCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhc----CCEEEEecCCeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999875 79999999999999
Q ss_pred cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHHhhCCHHHHHhCcccceecCc-------------hhhHH
Q 048389 476 MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEKEGNAYYSTARLWDDGIIDP-------------ADTRK 542 (566)
Q Consensus 476 mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~aa~~g~iD~II~p-------------~~tR~ 542 (566)
++||+++.|+|+.... .++ ..+. -..+|....+.|.||+||+. ..+++
T Consensus 316 isPEgaAsILwkd~~~----------A~e-------AAe~--lkiTa~dL~~lGiiD~IIpEp~ggAh~d~~~~~~~l~~ 376 (762)
T PLN03229 316 ASPEACAAILWKSAKA----------APK-------AAEK--LRITAQELCRLQIADGIIPEPLGGAHADPSWTSQQIKI 376 (762)
T ss_pred cCHHHHHHHHhcCccc----------HHH-------HHHH--cCCCHHHHHhCCCCeeeccCCCCccccCHHHHHHHHHH
Confidence 9999999999864221 111 1111 23688899999999999983 24566
Q ss_pred HHHHHHHHhhCC
Q 048389 543 IIGFCISAALNR 554 (566)
Q Consensus 543 ~L~~~L~~~~~~ 554 (566)
.|...|..+...
T Consensus 377 ~i~~~L~~l~~~ 388 (762)
T PLN03229 377 AINENMDELGKM 388 (762)
T ss_pred HHHHHHHHHHCC
Confidence 667777776653
No 22
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=99.97 E-value=2.1e-29 Score=253.33 Aligned_cols=205 Identities=23% Similarity=0.303 Sum_probs=157.8
Q ss_pred hHHHhhHhcCCCCHHHHHHhccCCCCCceeccccccccccccccCCCcEEEEEEEECCEEEEEEEecC--------cccc
Q 048389 68 SAVKRNRSRNKLLPRERIDRLTDPGSSFLELSQLAGHELYEETLQSGGIITGIGPVHGRLCMFVANDP--------TVKG 139 (566)
Q Consensus 68 ~~~~~~~~~g~l~areri~~L~D~gS~F~El~~l~~~~~~~~~~~~~gvvtG~G~I~Gr~v~v~a~D~--------tv~g 139 (566)
++++..|++||+++||||+.|+|+ |+|+.. ...| ..+.++|||+|+|+|++|+|++||. ++++
T Consensus 6 ~~v~~ar~~~r~~are~I~~L~D~---F~El~g---~~~~---~~d~~vItG~gri~Gr~V~via~~~~~~~~d~~~~~~ 76 (256)
T PRK12319 6 RILKEARDQGRLTTLDYATLIFDD---FMELHG---DRHF---RDDGAVVGGIGYLAGQPVTVVGIQKGKNLQDNLKRNF 76 (256)
T ss_pred HHHHHhccCCCCCHHHHHHHhCch---heeccC---CCCC---CCCCcEEEEEEEECCEEEEEEEeccCCccccceeeeC
Confidence 467888899999999999999995 999852 1122 1234699999999999999999875 3579
Q ss_pred ccCChHHHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccccccCchhhHHH-HHHHHHHHcCCCcCEEEEEecccccccc
Q 048389 140 GTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGR-IFYNQAIMSAEGIPQIALVLGSCTAGGA 218 (566)
Q Consensus 140 Gs~g~~~~~K~~r~~~lA~~~~lPlV~l~dsgGarl~~~~~~~~~~~~~~~-i~~~~a~ls~~~VP~isvv~G~~~GG~a 218 (566)
|++++.+.+|+.|++++|.++++|||+|+||+|++++.+.+. .++++ +++.+..++..+||+|+||+|+|+||||
T Consensus 77 G~~~~~g~rKa~R~~~lA~~~~lPvV~lvDtpGa~~g~~aE~----~G~~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA 152 (256)
T PRK12319 77 GQPHPEGYRKALRLMKQAEKFGRPVVTFINTAGAYPGVGAEE----RGQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGA 152 (256)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCcCCCHhHHh----ccHHHHHHHHHHHHhCCCCCEEEEEeCCcCcHHH
Confidence 999999999999999999999999999999999998654432 22344 3444566788889999999999999999
Q ss_pred ccccCCCeeEEEecceeEEeccHHHHHhhhccccc-------ccCCCcccccccccCcceEEEcc----hhHHHHHHHHH
Q 048389 219 YIPAMADESVMVKGNGTIFLAGPPLVKAATGEEIS-------AEDLGGAAVHCKTSGVSDYFAQD----ELHGLSLGRNI 287 (566)
Q Consensus 219 y~~a~~d~vi~v~~~a~i~~~GP~vv~~~~ge~v~-------~e~lGga~~h~~~sG~~d~v~~d----e~~a~~~~r~~ 287 (566)
|.++++|+++|. +++.+++.+|+....++-.+-+ ...+...+.. ..|++|.|++. ..++++.+++.
T Consensus 153 ~a~~~~D~v~m~-~~a~~~v~~pe~~a~il~~~~~~a~~aa~~~~~~a~~l~--~~g~iD~ii~e~~~~~~~~~~~~~~~ 229 (256)
T PRK12319 153 LALAVADQVWML-ENTMYAVLSPEGFASILWKDGSRATEAAELMKITAGELL--EMGVVDKVIPEHGYFSSEIIDMIKKN 229 (256)
T ss_pred HHhhcCCEEEEe-cCceEEEcCHHHHHHHHhcCcccHHHHHHHcCCCHHHHH--HCCCCcEecCCCCCCHHHHHHHHHHH
Confidence 999999999986 5799999999966555543321 1233222333 58999998852 23455555444
Q ss_pred H
Q 048389 288 I 288 (566)
Q Consensus 288 l 288 (566)
|
T Consensus 230 ~ 230 (256)
T PRK12319 230 L 230 (256)
T ss_pred H
Confidence 3
No 23
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=99.96 E-value=3.5e-28 Score=239.67 Aligned_cols=203 Identities=22% Similarity=0.317 Sum_probs=180.2
Q ss_pred HHhhhcc-cCCCCCCCHHHHhhhhccCCcccccccc--------------c-------------cceEEEEEEEECCeEE
Q 048389 319 ELYSIAP-ADLKQSFDIRSVIARIVDGSEFDEFKKL--------------Y-------------GTTLVTGFAKIFGQPV 370 (566)
Q Consensus 319 ~l~~~~p-~~~~~~~d~r~ii~~l~D~~sf~E~~~~--------------~-------------g~~vv~G~arI~G~~V 370 (566)
.-..+|| .+++.+++++++|+.|+|.+||.|+... | ..++|+|.|+|+|+||
T Consensus 45 ~n~~vcp~c~~h~ri~A~~Ri~~llD~gsf~el~~~l~~~dPL~F~d~k~Y~~rL~~a~~~tg~~davvtg~g~i~G~pv 124 (294)
T COG0777 45 SNLKVCPKCGHHMRISARERLEALLDEGSFEELDSPLEPKDPLKFPDSKKYKDRLEAARKKTGLDDAVVTGEGTINGLPV 124 (294)
T ss_pred hhhhcccccCcccccCHHHHHHHhhCCCcceecccCCCcCCcccCCcchhhHHHHHHHHhhcCCCcceEEEeeEECCeEE
Confidence 3457899 5999999999999999999999999763 2 2499999999999999
Q ss_pred EEEEeC-----CccCHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHhcchHHH--HHHH---HHHHHcCCCCEE
Q 048389 371 GIIGNN-----GILFHESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKA--GAKM---VMAVSCAKVPKV 440 (566)
Q Consensus 371 gvvan~-----G~l~~~~a~K~ar~i~l~~~~~iPlV~l~dt~G~~~g~~~E~~g~~~~--~a~~---~~a~~~a~vP~i 440 (566)
.+++.+ |++++..++|++|.++.|.+.++|+|.|..++|+ .||+|++.. +||. +..+.++++|+|
T Consensus 125 v~av~df~FmgGSmGsVvGeki~ra~E~A~e~k~P~v~f~aSGGA-----RMQEg~lSLMQMaktsaAl~~l~ea~lpyI 199 (294)
T COG0777 125 VLAVMDFAFMGGSMGSVVGEKITRAIERAIEDKLPLVLFSASGGA-----RMQEGILSLMQMAKTSAALKRLSEAGLPYI 199 (294)
T ss_pred EEEEEeccccccchhHHHHHHHHHHHHHHHHhCCCEEEEecCcch-----hHhHHHHHHHHHHHHHHHHHHHHhcCCceE
Confidence 999987 9999999999999999999999999999999997 888998775 5665 455778999999
Q ss_pred EEEcCCCCch--hhhhhccCCCCCCEEEEecCceeeccCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHHh
Q 048389 441 TIIVGGSFGA--GNYAMCGRAYSPNFMFLWPNARISVMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEK 518 (566)
Q Consensus 441 svi~g~~~Gg--g~~am~~~~~~~d~~~A~p~A~i~vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 518 (566)
+|++++++|| ++|||+| |+++|.|+|.|||.||+++.++ ++++|++.||
T Consensus 200 sVLt~PTtGGVsASfA~lG-----Di~iAEP~AlIGFAGpRVIEQT-----------------------ire~LPegfQ- 250 (294)
T COG0777 200 SVLTDPTTGGVSASFAMLG-----DIIIAEPGALIGFAGPRVIEQT-----------------------IREKLPEGFQ- 250 (294)
T ss_pred EEecCCCccchhHhHHhcc-----CeeecCcccccccCcchhhhhh-----------------------hcccCCcchh-
Confidence 9999999999 7778765 9999999999999999986655 3466788886
Q ss_pred hCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCCCCC
Q 048389 519 EGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNRPVE 557 (566)
Q Consensus 519 ~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~~~~ 557 (566)
+++|..++|.||.||++.|+|+.|...|.++...+..
T Consensus 251 --~aEfLlehG~iD~iv~R~elr~tla~ll~~~~~~~~~ 287 (294)
T COG0777 251 --TAEFLLEHGMIDMIVHRDELRTTLASLLAKLTPQPAP 287 (294)
T ss_pred --hHHHHHHcCCceeeecHHHHHHHHHHHHHHhCCCCCC
Confidence 8999999999999999999999999999999876643
No 24
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=99.95 E-value=6.9e-28 Score=247.24 Aligned_cols=195 Identities=21% Similarity=0.276 Sum_probs=154.7
Q ss_pred CChhHHHhhHhcCCCCHHHHHHhccCCCCCceeccccccccccccccCCCcEEEEEEEECCEEEEEEEecCc--------
Q 048389 65 GGESAVKRNRSRNKLLPRERIDRLTDPGSSFLELSQLAGHELYEETLQSGGIITGIGPVHGRLCMFVANDPT-------- 136 (566)
Q Consensus 65 gg~~~~~~~~~~g~l~areri~~L~D~gS~F~El~~l~~~~~~~~~~~~~gvvtG~G~I~Gr~v~v~a~D~t-------- 136 (566)
..-++++..+..+|.+++++|+.|+|. |+|+.. ...|. .+.++|+|+|+|+|++|+|++||++
T Consensus 59 ~~w~~v~~aR~~~Rp~~~d~i~~l~d~---f~El~g---d~~~~---dd~avV~Glgri~GrpV~VIa~dkg~~~~e~~~ 129 (322)
T CHL00198 59 TPLQRLHLVRQSERPTTLDYIPYILDE---WIELHG---DRGGS---DDPALVGGIGKINGRTIVFLGHQRGRNTKENVL 129 (322)
T ss_pred CHHHHHHhhcCCCCCCHHHHHHHHhHH---HHHHcc---ccccC---CCCceEEEEEEECCEEEEEEEecCCccchhhhh
Confidence 344677777777999999999999994 999742 22221 2579999999999999999999995
Q ss_pred cccccCChHHHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccccccCchhhHHH-HHHHHHHHcCCCcCEEEEEeccccc
Q 048389 137 VKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGR-IFYNQAIMSAEGIPQIALVLGSCTA 215 (566)
Q Consensus 137 v~gGs~g~~~~~K~~r~~~lA~~~~lPlV~l~dsgGarl~~~~~~~~~~~~~~~-i~~~~a~ls~~~VP~isvv~G~~~G 215 (566)
..+|++++.+.+|+.|++++|.++++|||+|+||+|++++...+.. +.++ +.+++..++...||+||||+|+|.|
T Consensus 130 ~~~G~~~p~g~rKa~Rlm~lA~~f~lPIItlvDTpGA~~G~~AE~~----G~~~aiar~l~~~a~~~VP~IsVViGeggs 205 (322)
T CHL00198 130 RNFGMPSPGGYRKALRLMKHANKFGLPILTFIDTPGAWAGVKAEKL----GQGEAIAVNLREMFSFEVPIICTIIGEGGS 205 (322)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCcCHHHHHH----hHHHHHHHHHHHHHcCCCCEEEEEeCcccH
Confidence 5899999999999999999999999999999999999986544321 2233 3444445666689999999999999
Q ss_pred cccccccCCCeeEEEecceeEEeccHHHHHhhhcccccc-------cCCCcccccccccCcceEEEc
Q 048389 216 GGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEISA-------EDLGGAAVHCKTSGVSDYFAQ 275 (566)
Q Consensus 216 G~ay~~a~~d~vi~v~~~a~i~~~GP~vv~~~~ge~v~~-------e~lGga~~h~~~sG~~d~v~~ 275 (566)
||||.++++|+++|++ ++.+++.+|+.-.+++..+-+. ..+...+++ ..|++|.|++
T Consensus 206 GGAlal~~aD~V~m~e-~a~~sVisPEg~a~Il~~d~~~a~~aA~~~~ita~dL~--~~giiD~ii~ 269 (322)
T CHL00198 206 GGALGIGIGDSIMMLE-YAVYTVATPEACAAILWKDSKKSLDAAEALKITSEDLK--VLGIIDEIIP 269 (322)
T ss_pred HHHHhhhcCCeEEEeC-CeEEEecCHHHHHHHHhcchhhHHHHHHHcCCCHHHHH--hCCCCeEecc
Confidence 9999999999999875 6999999999766666544321 123344455 5899998885
No 25
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=99.95 E-value=3.9e-27 Score=241.75 Aligned_cols=197 Identities=26% Similarity=0.321 Sum_probs=152.0
Q ss_pred CChhHHHhhHhcCCCCHHHHHHhccCCCCCceeccccccccccccccCCCcEEEEEEEECCEEEEEEEecCc--------
Q 048389 65 GGESAVKRNRSRNKLLPRERIDRLTDPGSSFLELSQLAGHELYEETLQSGGIITGIGPVHGRLCMFVANDPT-------- 136 (566)
Q Consensus 65 gg~~~~~~~~~~g~l~areri~~L~D~gS~F~El~~l~~~~~~~~~~~~~gvvtG~G~I~Gr~v~v~a~D~t-------- 136 (566)
-.-++++.-+...|....+.|+.|+|. |+|+..- ..|. .+.++|||+|+|+|++|+|++||+.
T Consensus 56 ~~w~~v~~ar~~~Rp~~~d~i~~l~d~---f~EL~gd---~~~~---dd~aiVtG~ari~GrpV~VIa~d~g~~~~e~~~ 126 (316)
T TIGR00513 56 GAWQRLQLARHPDRPYTLDYIELIFDD---FFELAGD---RAYA---DDKAIVGGIARLDGRPVVVIGHQKGRDTKEKLR 126 (316)
T ss_pred CHHHHHHHHhCCCCCchHHHHHHHhhh---heeeccc---cCCC---CCCceEEEEEEECCEEEEEEEecCCcccccccc
Confidence 345667777777777777999999993 9999531 1111 2479999999999999999999984
Q ss_pred cccccCChHHHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEecccccc
Q 048389 137 VKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAG 216 (566)
Q Consensus 137 v~gGs~g~~~~~K~~r~~~lA~~~~lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG 216 (566)
..+|++++.+.+|..|++++|.++++|||+|+||+|++++.+.+.. .+...+.+.+..++...||+||||+|+|+||
T Consensus 127 ~~~G~~~p~g~rKa~R~m~lA~~f~iPvVtlvDTpGa~~g~~aE~~---G~~~aia~~l~a~s~~~VP~IsVViGeggsG 203 (316)
T TIGR00513 127 RNFGMPAPEGYRKALRLMKMAERFKMPIITFIDTPGAYPGIGAEER---GQSEAIARNLREMARLGVPVICTVIGEGGSG 203 (316)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCCCCHHHHHH---HHHHHHHHHHHHHHcCCCCEEEEEecccccH
Confidence 6789999999999999999999999999999999999987655433 1122344445556777899999999999999
Q ss_pred ccccccCCCeeEEEecceeEEeccHHHHHhhhccccc-----ccCCC-cccccccccCcceEEEc
Q 048389 217 GAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEIS-----AEDLG-GAAVHCKTSGVSDYFAQ 275 (566)
Q Consensus 217 ~ay~~a~~d~vi~v~~~a~i~~~GP~vv~~~~ge~v~-----~e~lG-ga~~h~~~sG~~d~v~~ 275 (566)
|||.++++|+++|. +++.+++.+|+.-..++..+-+ ++.+. .+.-. ...|++|-|++
T Consensus 204 GAla~~~aD~v~m~-~~a~~sVisPEg~a~Il~kd~~~a~~aae~~~~ta~~l-~~~G~iD~II~ 266 (316)
T TIGR00513 204 GALAIGVGDKVNML-EYSTYSVISPEGCAAILWKDASKAPKAAEAMKITAPDL-KELGLIDSIIP 266 (316)
T ss_pred HHhhhccCCEEEEe-cCceEEecCHHHHHHHhccchhhHHHHHHHccCCHHHH-HHCCCCeEecc
Confidence 99999999998875 5799999999966655544321 12222 22222 25899998885
No 26
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=99.95 E-value=5e-27 Score=258.36 Aligned_cols=242 Identities=20% Similarity=0.281 Sum_probs=170.3
Q ss_pred cccccccccCCCCChHHHhcHHHHHHHHHHHHHHHHHHHcCCC-------hhHHHh--hHhcCCCCHHHHHHhccCCC--
Q 048389 24 LHLSVLPDAVDRNSEAFVRNSQVMQGLVSELQSHIQKVLGGGG-------ESAVKR--NRSRNKLLPRERIDRLTDPG-- 92 (566)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gg-------~~~~~~--~~~~g~l~areri~~L~D~g-- 92 (566)
+.|..|..+..+.--.|......++..+++|+..-+.. ...= +++.++ ..--.+||+|||++.+.||+
T Consensus 83 ~~~~~~~~~~~~~~ldfEkpi~ele~ki~el~~~~~~~-~~~~~~ei~~Le~k~~~~~~~iy~~LT~werV~~aR~p~RP 161 (762)
T PLN03229 83 SHFKPLKEKPKPVTLDFEKPLVDLEKKIVDVRKMANET-GLDFSDQIISLESKYQQALKDLYTHLTPIQRVNIARHPNRP 161 (762)
T ss_pred hccCCCCCCCCCCCcchhhHHHHHHHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHhCCCCC
Confidence 34444555544554456666666666666664421110 0000 111111 12236799999999999998
Q ss_pred -----CCceecccccccccccccc--CCCcEEEEEEEECCEEEEEEEecCcc--------ccccCChHHHHHHHHHHHHH
Q 048389 93 -----SSFLELSQLAGHELYEETL--QSGGIITGIGPVHGRLCMFVANDPTV--------KGGTYFPITIKKHLRAQEIA 157 (566)
Q Consensus 93 -----S~F~El~~l~~~~~~~~~~--~~~gvvtG~G~I~Gr~v~v~a~D~tv--------~gGs~g~~~~~K~~r~~~lA 157 (566)
+ |.+++.+.... .++. -+.+||||+|+|+||+|+|++||+++ .+|++++.+++|+.|++++|
T Consensus 162 ~~~Dyi-~~i~ddf~EL~--Gdr~~~dD~aIVtGlGRIdGrpV~VIAndkg~~tke~~~rnfG~~~peGyRKAlRlmkLA 238 (762)
T PLN03229 162 TFLDHI-FNITDKFVELH--GDRAGYDDPAIVTGIGTIDGKRYMFIGHQKGRNTKENIMRNFGMPTPHGYRKALRMMYYA 238 (762)
T ss_pred cHHHHH-HHHHHHHHHhc--CcccCCCCCCeEEEEEEECCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHH
Confidence 4 44444332211 1111 23699999999999999999999964 89999999999999999999
Q ss_pred HhCCCcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEE
Q 048389 158 AQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIF 237 (566)
Q Consensus 158 ~~~~lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~ 237 (566)
.++++|||+|+||+|++++.+.+.. .+...+++++..++..+||+||||+|+|+|||||.++++|+++|++ ++.++
T Consensus 239 ekfgLPIVtLVDTpGA~pG~~AEe~---Gq~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~aD~VlMle-~A~~s 314 (762)
T PLN03229 239 DHHGFPIVTFIDTPGAYADLKSEEL---GQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCANKLLMLE-NAVFY 314 (762)
T ss_pred HHcCCCEEEEEECCCcCCCchhHHH---hHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcCCEEEEec-CCeEE
Confidence 9999999999999999998766643 2223344555566677899999999999999999999999999865 69999
Q ss_pred eccHHHHHhhhcccccc-------cCCCcccccccccCcceEEEc
Q 048389 238 LAGPPLVKAATGEEISA-------EDLGGAAVHCKTSGVSDYFAQ 275 (566)
Q Consensus 238 ~~GP~vv~~~~ge~v~~-------e~lGga~~h~~~sG~~d~v~~ 275 (566)
++||+....++..+.+. ..+...+++ ..|++|.|++
T Consensus 315 VisPEgaAsILwkd~~~A~eAAe~lkiTa~dL~--~lGiiD~IIp 357 (762)
T PLN03229 315 VASPEACAAILWKSAKAAPKAAEKLRITAQELC--RLQIADGIIP 357 (762)
T ss_pred ecCHHHHHHHHhcCcccHHHHHHHcCCCHHHHH--hCCCCeeecc
Confidence 99999877766654321 223444455 5899998885
No 27
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=99.95 E-value=4.1e-27 Score=239.04 Aligned_cols=198 Identities=18% Similarity=0.192 Sum_probs=168.2
Q ss_pred hhhcc-cCCCCCCCHHHHhhhhccCCccccccc--------cc--------------------cceEEEEEEEECCeEEE
Q 048389 321 YSIAP-ADLKQSFDIRSVIARIVDGSEFDEFKK--------LY--------------------GTTLVTGFAKIFGQPVG 371 (566)
Q Consensus 321 ~~~~p-~~~~~~~d~r~ii~~l~D~~sf~E~~~--------~~--------------------g~~vv~G~arI~G~~Vg 371 (566)
..+|| .+++.++++|++|+.|+|++||.|+.. .| +.++|+|+|+|+|++|.
T Consensus 57 ~~vcp~c~~h~rltAreRI~~L~D~gSF~E~~~~~~~~dpl~f~~d~~~Y~~rl~~a~~~t~~~dgVVtG~G~I~Gr~v~ 136 (296)
T CHL00174 57 MNICEQCGYHLKMSSSDRIELLIDPGTWNPMDEDMVSLDPIEFHSDEEPYKDRIDSYQKKTGLTDAVQTGIGQLNGIPVA 136 (296)
T ss_pred CCCCCCCCCCcCCCHHHHHHHHccCCccEEcCCccCcCCCccccccccchHHHHHHHHhccCCCccEEEEEEEECCEEEE
Confidence 56899 599999999999999999999999964 12 25999999999999999
Q ss_pred EEEeC-----CccCHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHhcchHH--HHHHHHHH----HHcCCCCEE
Q 048389 372 IIGNN-----GILFHESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAK--AGAKMVMA----VSCAKVPKV 440 (566)
Q Consensus 372 vvan~-----G~l~~~~a~K~ar~i~l~~~~~iPlV~l~dt~G~~~g~~~E~~g~~~--~~a~~~~a----~~~a~vP~i 440 (566)
|+++| |++++..++|++|.+++|.+.++|||+|.|++|. .+++|+.. .+++...+ .....+|+|
T Consensus 137 v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~rlPlV~l~~SGGA-----RmQEg~~sL~qmak~saa~~~~~~~~~vP~I 211 (296)
T CHL00174 137 LGVMDFQFMGGSMGSVVGEKITRLIEYATNESLPLIIVCASGGA-----RMQEGSLSLMQMAKISSALYDYQSNKKLFYI 211 (296)
T ss_pred EEEECCcccccCcCHHHHHHHHHHHHHHHHcCCCEEEEECCCCc-----cccccchhhhhhHHHHHHHHHHHHcCCCCEE
Confidence 99998 9999999999999999999999999999999998 45667654 45666333 226889999
Q ss_pred EEEcCCCCchhhhhhccCCCCCCEEEEecCceeeccCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHHhhC
Q 048389 441 TIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEKEG 520 (566)
Q Consensus 441 svi~g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 520 (566)
+|++++++||+++..+ +..|+++|.|+|.|++.||+++.+++. +++++.|+
T Consensus 212 svl~gPt~GG~aas~a---~l~Diiiae~~A~IgfAGPrVIe~t~g-----------------------e~lpe~fq--- 262 (296)
T CHL00174 212 SILTSPTTGGVTASFG---MLGDIIIAEPNAYIAFAGKRVIEQTLN-----------------------KTVPEGSQ--- 262 (296)
T ss_pred EEEcCCCchHHHHHHH---HcccEEEEeCCeEEEeeCHHHHHHhcC-----------------------CcCCcccc---
Confidence 9999999999766332 246999999999999999998766542 23455554
Q ss_pred CHHHHHhCcccceecCchhhHHHHHHHHHHhh
Q 048389 521 NAYYSTARLWDDGIIDPADTRKIIGFCISAAL 552 (566)
Q Consensus 521 ~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~ 552 (566)
++.+..++|+||.|+++.++|+.|...|+++.
T Consensus 263 ~ae~l~~~G~vD~iV~r~~lr~~l~~ll~~~~ 294 (296)
T CHL00174 263 AAEYLFDKGLFDLIVPRNLLKGVLSELFQLHG 294 (296)
T ss_pred cHHHHHhCcCceEEEcHHHHHHHHHHHHHhhc
Confidence 89999999999999999999999999999874
No 28
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=99.95 E-value=4.5e-27 Score=258.43 Aligned_cols=200 Identities=18% Similarity=0.210 Sum_probs=154.6
Q ss_pred hcCCCCHHHHHHhccCCCCCceeccccccccccccccCCCcEEEEEEEECCEEEEEEEecCccccccCChHHHHHHHHHH
Q 048389 75 SRNKLLPRERIDRLTDPGSSFLELSQLAGHELYEETLQSGGIITGIGPVHGRLCMFVANDPTVKGGTYFPITIKKHLRAQ 154 (566)
Q Consensus 75 ~~g~l~areri~~L~D~gS~F~El~~l~~~~~~~~~~~~~gvvtG~G~I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~ 154 (566)
.+..+++|+||+.|+|+|| |+|++.. +++++|||+|+|+|++|+|++||++++||++++.+++|+.|++
T Consensus 275 ~~~~~d~r~~i~~l~D~~s-f~El~~~----------~g~~vVtG~gri~G~~V~vvAnd~~~~~G~~~~~~~~K~~r~i 343 (512)
T TIGR01117 275 PNKPYDMRDVITAIVDNGD-YLEVQPY----------YAPNIITCFARINGQSVGIIANQPKVMAGCLDIDSSDKIARFI 343 (512)
T ss_pred CCCCCCHHHHHHHhCCCCc-eEEeecc----------CCCcEEEEEEEECCEEEEEEEeccccccCCCCHHHHHHHHHHH
Confidence 3456999999999999999 9999764 5789999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEecccccccccccc----CCCeeEEE
Q 048389 155 EIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAYIPA----MADESVMV 230 (566)
Q Consensus 155 ~lA~~~~lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG~ay~~a----~~d~vi~v 230 (566)
++|.++++|||+|+||+|+..+.+.+.-....++++++.+++ ..+||+|+||+|+|+||+++..+ -+|+++ +
T Consensus 344 ~~a~~~~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~---~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~-a 419 (512)
T TIGR01117 344 RFCDAFNIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYS---EATVPKVTIITRKAYGGAYLAMCSKHLGADQVY-A 419 (512)
T ss_pred HHHHHcCCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHH---hCCCCEEEEEcCCCchHHHHHhccccCCCCEEE-E
Confidence 999999999999999999855443332112345566666644 45899999999999988544332 278865 5
Q ss_pred ecceeEEeccHHH-HHhhhccccc----------------ccCCCcccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 231 KGNGTIFLAGPPL-VKAATGEEIS----------------AEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 231 ~~~a~i~~~GP~v-v~~~~ge~v~----------------~e~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
||+++++++||+. ++....+++. .++++.+...+ ..|.+|-|++. .|.-..+.++|..+
T Consensus 420 ~p~a~~~v~~pe~a~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a-~~g~vD~VI~P-~~tR~~l~~~l~~~ 495 (512)
T TIGR01117 420 WPTAEIAVMGPAGAANIIFRKDIKEAKDPAATRKQKIAEYREEFANPYKAA-ARGYVDDVIEP-KQTRPKIVNALAML 495 (512)
T ss_pred cCCCeEeecCHHHHHHHHhhhhcccccCHHHHHHHHHHHHHHhhcCHHHHH-hcCCCCeeECh-HHHHHHHHHHHHHH
Confidence 8899999999995 3433333321 01234444444 58999999964 56666677777765
No 29
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=99.95 E-value=6.1e-27 Score=240.64 Aligned_cols=196 Identities=23% Similarity=0.294 Sum_probs=152.6
Q ss_pred CChhHHHhhHhcCCCCHHHHHHhccCCCCCceeccccccccccccccCCCcEEEEEEEECCEEEEEEEecCc--------
Q 048389 65 GGESAVKRNRSRNKLLPRERIDRLTDPGSSFLELSQLAGHELYEETLQSGGIITGIGPVHGRLCMFVANDPT-------- 136 (566)
Q Consensus 65 gg~~~~~~~~~~g~l~areri~~L~D~gS~F~El~~l~~~~~~~~~~~~~gvvtG~G~I~Gr~v~v~a~D~t-------- 136 (566)
..-++++.-+...+...++.|+.|+| + |+|+. +.+.|. .+.++|||+|+|+|++|+|++||++
T Consensus 56 ~~w~~v~~ar~~~Rp~~~d~I~~l~d--~-f~El~---gdr~~~---dd~aiV~G~ari~GrpV~VIa~d~g~~~~e~~~ 126 (319)
T PRK05724 56 TPWQKVQLARHPQRPYTLDYIELLFT--D-FTELH---GDRAFA---DDKAIVGGLARLNGRPVMVIGHQKGRDTKEKIR 126 (319)
T ss_pred CHHHhhhcccCCCCCCHHHHHHHHhh--H-HHHHc---CCcCCC---CCCceEEEEEEECCEEEEEEEecCCcccccccc
Confidence 34456666666677777899999998 4 99984 223332 1369999999999999999999994
Q ss_pred cccccCChHHHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEecccccc
Q 048389 137 VKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAG 216 (566)
Q Consensus 137 v~gGs~g~~~~~K~~r~~~lA~~~~lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG 216 (566)
+.+|++.+.+++|..|++++|.++++|||+|+||+|++++.+.+.- .+...+.+.+..++..+||+||||+|+|+||
T Consensus 127 ~~~G~~~peg~rKa~R~m~lA~~f~lPIVtlvDTpGa~~G~~aE~~---G~~~aia~~l~~~a~~~VP~IsVIiGeg~sG 203 (319)
T PRK05724 127 RNFGMPRPEGYRKALRLMKMAEKFGLPIITFIDTPGAYPGIGAEER---GQSEAIARNLREMARLKVPIICTVIGEGGSG 203 (319)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCHHHHhc---cHHHHHHHHHHHHhCCCCCEEEEEeCCccHH
Confidence 6899999999999999999999999999999999999987544421 1223345556667777899999999999999
Q ss_pred ccccccCCCeeEEEecceeEEeccHHHHHhhhccccc-------ccCCCcccccccccCcceEEEc
Q 048389 217 GAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEIS-------AEDLGGAAVHCKTSGVSDYFAQ 275 (566)
Q Consensus 217 ~ay~~a~~d~vi~v~~~a~i~~~GP~vv~~~~ge~v~-------~e~lGga~~h~~~sG~~d~v~~ 275 (566)
|||.++++|+++|. +++.+++.+|+....++..+-+ ...+...+.. ..|++|-|++
T Consensus 204 GAla~~~aD~v~m~-~~A~~svisPEg~a~Il~~~~~~a~~aae~~~ita~~l~--~~g~iD~II~ 266 (319)
T PRK05724 204 GALAIGVGDRVLML-EYSTYSVISPEGCASILWKDASKAPEAAEAMKITAQDLK--ELGIIDEIIP 266 (319)
T ss_pred HHHHHhccCeeeee-cCceEeecCHHHHHHHHhcCchhHHHHHHHcCCCHHHHH--HCCCceEecc
Confidence 99999999998875 6799999999966555543321 1224333334 5899998885
No 30
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=99.94 E-value=6.6e-27 Score=232.28 Aligned_cols=205 Identities=21% Similarity=0.247 Sum_probs=175.3
Q ss_pred cCCCCCCCHHHHhhhhccCCccccccccc----cceEEEEEEEECCeEEEEEEeC-------------CccCHHHHHHHH
Q 048389 326 ADLKQSFDIRSVIARIVDGSEFDEFKKLY----GTTLVTGFAKIFGQPVGIIGNN-------------GILFHESALKGA 388 (566)
Q Consensus 326 ~~~~~~~d~r~ii~~l~D~~sf~E~~~~~----g~~vv~G~arI~G~~Vgvvan~-------------G~l~~~~a~K~a 388 (566)
+.+.+| ...++|+.+||+ |.|+..+- .+++|.|+||++|+||.||+.+ |...|++.+|+.
T Consensus 64 Rhp~RP-~tldyi~~i~~d--f~eL~GDR~f~dD~Aivgglar~~G~pv~vIG~qKG~dtk~~~~rNFGm~~PeGyRKAl 140 (317)
T COG0825 64 RHPDRP-YTLDYIELLFTD--FVELHGDRAFADDPAIVGGLARFGGQPVVVIGHQKGRDTKEKLKRNFGMPRPEGYRKAL 140 (317)
T ss_pred hCCCCC-cHHHHHHHHHhH--HHHhcCccccCcChhheeeeeeECCeeEEEEeeecCccchhHHHhcCCCCCchHHHHHH
Confidence 344455 467899999998 99998753 3699999999999999999975 888899999999
Q ss_pred HHHHHHhcCCCcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhhhhccCCCCCCEEEEe
Q 048389 389 HFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLW 468 (566)
Q Consensus 389 r~i~l~~~~~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~am~~~~~~~d~~~A~ 468 (566)
|.+++|++|++|||+|+||+|..+|..+|..|+..++|+.+..++..+||+|++|+|...+||++||+- +|.++|.
T Consensus 141 Rlm~~AekF~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~v----ad~V~ml 216 (317)
T COG0825 141 RLMKLAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGV----ADRVLML 216 (317)
T ss_pred HHHHHHHHhCCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhH----HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999874 5889999
Q ss_pred cCceeeccCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHHhhCCHHHHHhCcccceecCc-----------
Q 048389 469 PNARISVMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEKEGNAYYSTARLWDDGIIDP----------- 537 (566)
Q Consensus 469 p~A~i~vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~aa~~g~iD~II~p----------- 537 (566)
.++.++|++||+++.|++++... ..+..+. -..++-...+.|.||.||+.
T Consensus 217 e~s~ySVisPEG~AsILWkD~~k-----------------a~eAAe~--mkita~dLk~lgiID~II~Ep~ggAhr~~~~ 277 (317)
T COG0825 217 ENSTYSVISPEGCASILWKDASK-----------------AKEAAEA--MKITAHDLKELGIIDGIIPEPLGGAHRDPEA 277 (317)
T ss_pred HhceeeecChhhhhhhhhcChhh-----------------hHHHHHH--cCCCHHHHHhCCCcceeccCCCCccccCHHH
Confidence 99999999999999999964221 0111111 13578888899999999985
Q ss_pred --hhhHHHHHHHHHHhhCCCC
Q 048389 538 --ADTRKIIGFCISAALNRPV 556 (566)
Q Consensus 538 --~~tR~~L~~~L~~~~~~~~ 556 (566)
..+++.|...|..+.+.+.
T Consensus 278 ~a~~l~~~l~~~l~~L~~l~~ 298 (317)
T COG0825 278 AAEALKNALLKELHELDKLPE 298 (317)
T ss_pred HHHHHHHHHHHHHHHHHcCCH
Confidence 3677888888888877654
No 31
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=99.94 E-value=1.9e-25 Score=233.91 Aligned_cols=195 Identities=25% Similarity=0.293 Sum_probs=151.6
Q ss_pred hHHHhhHhcCCCCHHHHHHhccCCCCCceeccccccccccccccCCCcEEEEEEEECCEEEEEEEecCccc--------c
Q 048389 68 SAVKRNRSRNKLLPRERIDRLTDPGSSFLELSQLAGHELYEETLQSGGIITGIGPVHGRLCMFVANDPTVK--------G 139 (566)
Q Consensus 68 ~~~~~~~~~g~l~areri~~L~D~gS~F~El~~l~~~~~~~~~~~~~gvvtG~G~I~Gr~v~v~a~D~tv~--------g 139 (566)
++++.-+...|.+..+.|+.|+|. |+|+..- ..|. .+.++|||+|+|+|++|+|++||+.+. .
T Consensus 129 q~vq~aRhp~RP~~~d~I~~i~dd---f~EL~Gd---r~~~---dD~aIVtG~grI~GrpV~VIandkg~~~ke~~~rnf 199 (431)
T PLN03230 129 QRLSVARHPNRPTFLDHVLNMTDK---WVELHGD---RAGF---DDPAIVCGIGSMEGMSFMFIGHQKGRNTKENIYRNF 199 (431)
T ss_pred HHHHHHhCCCCCCHHHHHHHhhhH---HhhhcCc---ccCC---CCCCeEEEEEEECCEEEEEEEeccCcccccccccCC
Confidence 445555566788889999999984 9998532 2221 347999999999999999999998653 4
Q ss_pred ccCChHHHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEeccccccccc
Q 048389 140 GTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAY 219 (566)
Q Consensus 140 Gs~g~~~~~K~~r~~~lA~~~~lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG~ay 219 (566)
|++.+.+.+|..|++++|.++++|||+|+||+|++.+.+.+.. .+...+++++..++..+||+||||+|+|.+||||
T Consensus 200 G~~~peGyRKAlR~mklAekf~lPIVtLVDTpGA~pG~~AEe~---Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGAl 276 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKFGFPILTFVDTPGAYAGIKAEEL---GQGEAIAFNLREMFGLRVPIIATVIGEGGSGGAL 276 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCCCHHHHHH---hHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHH
Confidence 9999999999999999999999999999999999987665532 2223456666678888999999999999999999
Q ss_pred cccCCCeeEEEecceeEEeccHHHHHhhhccccc-----ccCCCcccccccccCcceEEEc
Q 048389 220 IPAMADESVMVKGNGTIFLAGPPLVKAATGEEIS-----AEDLGGAAVHCKTSGVSDYFAQ 275 (566)
Q Consensus 220 ~~a~~d~vi~v~~~a~i~~~GP~vv~~~~ge~v~-----~e~lGga~~h~~~sG~~d~v~~ 275 (566)
.++++|+++|.+ ++.++++||+.-.+++-.+-+ ++.++-........|++|-|++
T Consensus 277 alg~aD~VlMle-~A~ysVisPEgaAsILwkd~~~A~eAAealkitA~dL~~~GiID~II~ 336 (431)
T PLN03230 277 AIGCGNRMLMME-NAVYYVASPEACAAILWKSAAAAPKAAEALRITAAELVKLGVVDEIVP 336 (431)
T ss_pred HhhcCCEEEEec-CCEEEecCHHHHHHHHhccccchHHHHHHcCCCHHHHHhCCCCeEecc
Confidence 999999988865 799999999977666654321 1223222222236899998885
No 32
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=99.90 E-value=3.2e-23 Score=223.72 Aligned_cols=203 Identities=23% Similarity=0.305 Sum_probs=161.1
Q ss_pred hcCCCCHHHHHHhccCCCCCceeccccccccccccccCCCcEEEEEEEECCEEEEEEEecCccccccCChHHHHHHHHHH
Q 048389 75 SRNKLLPRERIDRLTDPGSSFLELSQLAGHELYEETLQSGGIITGIGPVHGRLCMFVANDPTVKGGTYFPITIKKHLRAQ 154 (566)
Q Consensus 75 ~~g~l~areri~~L~D~gS~F~El~~l~~~~~~~~~~~~~gvvtG~G~I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~ 154 (566)
.+-.|++||.|..|+|.+| |+|+.+. ++.++|||++||+|++|+|+||+++.+||.|....+.|..||+
T Consensus 284 ~~~pYDvrevI~rl~D~~~-F~E~~~~----------~a~~iV~GfaRi~G~pVGiIANqp~~~~G~l~~~sa~KaArFI 352 (526)
T COG4799 284 PRKPYDVREVIARLVDDGE-FLEFKAG----------YAKNIVTGFARIDGRPVGIIANQPRHLGGVLDIDSADKAARFI 352 (526)
T ss_pred CCccccHHHHHHHhcCCcc-HHHHHhh----------hCcceEEEEEEECCEEEEEEecCccccccccchHHHHHHHHHH
Confidence 4556999999999999877 9999765 6889999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEecccccccccc---ccC-CCeeEEE
Q 048389 155 EIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAYI---PAM-ADESVMV 230 (566)
Q Consensus 155 ~lA~~~~lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG~ay~---~a~-~d~vi~v 230 (566)
++|..++||||+|+|++|+..+...+.-..+.+.+++++++++ ++||+|+||+|+++||+.|. .++ .||+ .+
T Consensus 353 ~~cd~~~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~ae---atVPkitvI~rkayGga~~~M~~~~~~~~~~-~A 428 (526)
T COG4799 353 RLCDAFNIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAE---ATVPKITVITRKAYGGAYYVMGGKALGPDFN-YA 428 (526)
T ss_pred HhhhccCCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhhHhh---ccCCeEEEEecccccceeeeecCccCCCcee-Ee
Confidence 9999999999999999998665433322235677899988665 47999999999999998874 233 5665 57
Q ss_pred ecceeEEeccHH-HHHhhhcccccc--------------------cCCCcccccccccCcceEEEcchhHHHHHHHHHHH
Q 048389 231 KGNGTIFLAGPP-LVKAATGEEISA--------------------EDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIK 289 (566)
Q Consensus 231 ~~~a~i~~~GP~-vv~~~~ge~v~~--------------------e~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls 289 (566)
||+++++++||+ +++...-+++.. ++++.+- .+...|.+|.+.+ -.+-...+.+.|+
T Consensus 429 wP~a~iaVMG~egAv~i~~~k~l~~~~~~~~~~~~~~~~~~~eY~~~~~~p~-~aa~r~~iD~vI~-p~~tR~~L~~~l~ 506 (526)
T COG4799 429 WPTAEIAVMGPEGAVSILYRKELAAAERPEEREALLRKQLIAEYEEQFSNPY-YAAERGYIDAVID-PADTRAVLGRALS 506 (526)
T ss_pred cCcceeeecCHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHhccchH-HHHHhCCCCcccC-HHHHHHHHHHHHH
Confidence 999999999998 555444333311 1233433 3446899999885 4667777777777
Q ss_pred hcccc
Q 048389 290 NLHMA 294 (566)
Q Consensus 290 ~Lp~~ 294 (566)
.+...
T Consensus 507 ~~~~k 511 (526)
T COG4799 507 ALANK 511 (526)
T ss_pred HHhcC
Confidence 76543
No 33
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=99.89 E-value=1.1e-22 Score=224.95 Aligned_cols=156 Identities=19% Similarity=0.258 Sum_probs=129.7
Q ss_pred hcCCCCHHHHHHhccCCCCCceeccccccccccccccCCCcEEEEEEEECCEEEEEEEecCccccccCChHHHHHHHHHH
Q 048389 75 SRNKLLPRERIDRLTDPGSSFLELSQLAGHELYEETLQSGGIITGIGPVHGRLCMFVANDPTVKGGTYFPITIKKHLRAQ 154 (566)
Q Consensus 75 ~~g~l~areri~~L~D~gS~F~El~~l~~~~~~~~~~~~~gvvtG~G~I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~ 154 (566)
.+..+++|+.|+.|+|.|| |+|+.+. ++.++|||+|||+|++|+|++|| |++....++|..|++
T Consensus 331 ~~~~yD~r~vi~~ivD~~s-f~E~~~~----------~g~~iVtG~aRi~G~~VgvvAn~-----g~l~~~~a~Kaarfi 394 (569)
T PLN02820 331 HKQSFDVRSVIARIVDGSE-FDEFKKN----------YGTTLVTGFARIYGQPVGIIGNN-----GILFTESALKGAHFI 394 (569)
T ss_pred CCCCCCHHHHHHHhcCCce-eEEeccc----------CCCcEEEEEEEECCEEEEEEEEC-----CccCHHHHHHHHHHH
Confidence 4557999999999999999 9999866 68899999999999999999997 789999999999999
Q ss_pred HHHHhCCCcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEecccccccccccc----CCCeeEEE
Q 048389 155 EIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAYIPA----MADESVMV 230 (566)
Q Consensus 155 ~lA~~~~lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG~ay~~a----~~d~vi~v 230 (566)
++|.++++|||+|+|++|++++.+.|.-+.....++++++++ ...||+|+||+|+|+|||+|..+ -.|+++ +
T Consensus 395 ~lc~~~~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a---~~~VP~isvi~g~a~G~g~~aM~g~~~~~d~~~-a 470 (569)
T PLN02820 395 ELCAQRGIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVA---CAKVPKITIIVGGSFGAGNYGMCGRAYSPNFLF-M 470 (569)
T ss_pred HHHHhcCCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHH---hCCCCEEEEEECCcchHHHHHhcCcCCCCCEEE-E
Confidence 999999999999999999998654443223455567776644 34799999999999998877532 257865 5
Q ss_pred ecceeEEeccHH-HHHhhhcc
Q 048389 231 KGNGTIFLAGPP-LVKAATGE 250 (566)
Q Consensus 231 ~~~a~i~~~GP~-vv~~~~ge 250 (566)
||+++++++||+ +++.+...
T Consensus 471 wp~A~i~vmg~e~aa~il~~~ 491 (569)
T PLN02820 471 WPNARIGVMGGAQAAGVLAQI 491 (569)
T ss_pred CCCCeEEecCHHHHHHHHHHH
Confidence 899999999998 55554443
No 34
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=99.88 E-value=2.9e-22 Score=220.52 Aligned_cols=161 Identities=25% Similarity=0.324 Sum_probs=125.0
Q ss_pred cCCCCHHHHHHhccCCCCCceeccccccccccccccCCCcEEEEEEEECCEEEEEEEecCccccccCChHHHHHHHHHHH
Q 048389 76 RNKLLPRERIDRLTDPGSSFLELSQLAGHELYEETLQSGGIITGIGPVHGRLCMFVANDPTVKGGTYFPITIKKHLRAQE 155 (566)
Q Consensus 76 ~g~l~areri~~L~D~gS~F~El~~l~~~~~~~~~~~~~gvvtG~G~I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~ 155 (566)
+..+++|+.|+.++|.+| |+|+.+. ++.++|||++||+|++|+|+|||+.+.+|++.+..++|..|+++
T Consensus 255 ~~~yD~r~ii~~i~D~~~-f~E~~~~----------~g~~~vtg~arl~G~pVGiian~~~~~~G~~~~~~a~K~arfi~ 323 (493)
T PF01039_consen 255 RRPYDMRDIIARIVDDGS-FFELKPG----------YGKNIVTGFARLGGRPVGIIANNPRQRAGALDPDGARKAARFIR 323 (493)
T ss_dssp TS---HHHHHHHHSGGGB-EEEESTT----------SSTTEEEEEEEETTEEEEEEEE-TTCGGGEB-HHHHHHHHHHHH
T ss_pred CCCCCcceeeEecccCCC-ceecccc----------ccCCeEEeeeeeCCcceEEEEeccccccccCChHHHHHHHHHHH
Confidence 456999999999999999 9999754 57899999999999999999999999999999999999999999
Q ss_pred HHHhCCCcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEeccccccccccccCC----CeeEEEe
Q 048389 156 IAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMA----DESVMVK 231 (566)
Q Consensus 156 lA~~~~lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~----d~vi~v~ 231 (566)
+|.++++|||+|+|++|+..+.+.|.-..+...++++.+++.+ .||+|+||+|+++||++|..+.. |++ .+|
T Consensus 324 lcd~~~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~---~vP~itvi~~~~~Gga~~am~~~~~~~~~~-~Aw 399 (493)
T PF01039_consen 324 LCDAFNIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEA---TVPKITVIVRKAYGGAYYAMCGRGYGPDFV-FAW 399 (493)
T ss_dssp HHHHTT--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH----S-EEEEEEEEEEHHHHHHTTGGGGTTSEE-EEE
T ss_pred HHHhhCCceEEEeecccccccchhhhcchHHHHHHHHHHHHcC---CCCEEEEEeCCccCcchhhhcccccchhhh-hhh
Confidence 9999999999999999998876555433456677888887665 69999999999999877654433 776 579
Q ss_pred cceeEEeccHHHH-Hhhhccc
Q 048389 232 GNGTIFLAGPPLV-KAATGEE 251 (566)
Q Consensus 232 ~~a~i~~~GP~vv-~~~~ge~ 251 (566)
|++++++.+|+.. +.....+
T Consensus 400 p~a~~~vm~~e~a~~i~~~~~ 420 (493)
T PF01039_consen 400 PTAEIGVMGPEGAASILYRDE 420 (493)
T ss_dssp TT-EEESS-HHHHHHHHTHHH
T ss_pred hcceeeecChhhhheeeehhh
Confidence 9999999999954 4444333
No 35
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=99.86 E-value=5.1e-21 Score=190.81 Aligned_cols=191 Identities=15% Similarity=0.153 Sum_probs=150.4
Q ss_pred HHHHHHhccCCCCCceeccccccccccccccCCCcEEEEEEEECCEEEEEEEecCccccccCChHHHHHHHHHHHHH-H-
Q 048389 81 PRERIDRLTDPGSSFLELSQLAGHELYEETLQSGGIITGIGPVHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIA-A- 158 (566)
Q Consensus 81 areri~~L~D~gS~F~El~~l~~~~~~~~~~~~~gvvtG~G~I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA-~- 158 (566)
.|+.|+.|+|.++ |+|+. .++|||+|+++|++|+|++|+..+ .+|..++.|..+++..| +
T Consensus 2 ~~~~l~~l~d~~~-~~e~~--------------~~vv~G~arl~G~~V~vIa~~~~~---~~g~~~~~k~A~~v~~~~d~ 63 (238)
T TIGR03134 2 GRDWLAALFPNGH-EVAGD--------------PGVLVGSAELAGGKVTVIGVVPDA---EVGLDEALALAQAVLDVIEA 63 (238)
T ss_pred HHHHHHHHcCCCc-EEecC--------------CcEEEEEEEECCEEEEEEEECCCC---cCChHHHHHHHHHHHHHHHh
Confidence 5789999999999 88874 279999999999999999999865 89999999999999996 4
Q ss_pred hCCCcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEeccccccccccccC-CCeeEEEecceeEE
Q 048389 159 QCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAYIPAM-ADESVMVKGNGTIF 237 (566)
Q Consensus 159 ~~~lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG~ay~~a~-~d~vi~v~~~a~i~ 237 (566)
++++|||+|+|++|++++..+|..+.....++++++++.++..++|+|+||+|+++||+++..++ +|+++ ++|++++.
T Consensus 64 ~f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~-Alp~A~i~ 142 (238)
T TIGR03134 64 DDKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRII-ALPGAMVH 142 (238)
T ss_pred cCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEE-EcCCcEEE
Confidence 49999999999999999877775544556678888999998889999999999999998887776 89865 57999999
Q ss_pred eccHHHHHhhhcccccc-cCC--------CcccccccccCcceEEEcchhH-HH-HHHHHHHHhc
Q 048389 238 LAGPPLVKAATGEEISA-EDL--------GGAAVHCKTSGVSDYFAQDELH-GL-SLGRNIIKNL 291 (566)
Q Consensus 238 ~~GP~vv~~~~ge~v~~-e~l--------Gga~~h~~~sG~~d~v~~de~~-a~-~~~r~~ls~L 291 (566)
+++|+....++..+.+. +++ -+..... ..|.+|.+.+..+. .. +.+.+.++-+
T Consensus 143 vm~~e~aa~I~~~~~~~~~e~a~~~~~~a~~~~~~~-~~G~vd~vi~~~~~~~~~~~~~~~~~~~ 206 (238)
T TIGR03134 143 VMDLESMARVTKRSVEELEALAKSSPVFAPGIENFV-KLGGVHALLDVADADAPAAQLAAVLAAL 206 (238)
T ss_pred ecCHHHHHHHHccCHhHHHHHHHhhhhhccCHHHHH-hCCCccEEeCCCCcccHHHHHHHHHHhh
Confidence 99999877777655431 111 1211222 58999998863331 12 5555555543
No 36
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=99.86 E-value=1.4e-20 Score=190.62 Aligned_cols=196 Identities=19% Similarity=0.231 Sum_probs=147.3
Q ss_pred CCCCHHHHhhhhccCCccccc-cc----------------cccceEEEEEEEECCeEEEEEEeC-----CccCHHHHHHH
Q 048389 330 QSFDIRSVIARIVDGSEFDEF-KK----------------LYGTTLVTGFAKIFGQPVGIIGNN-----GILFHESALKG 387 (566)
Q Consensus 330 ~~~d~r~ii~~l~D~~sf~E~-~~----------------~~g~~vv~G~arI~G~~Vgvvan~-----G~l~~~~a~K~ 387 (566)
...++|++|+.|+|++||.|+ .+ .++.++|+|+|+|+|+||.|+++| |+++...++|+
T Consensus 4 ~~ltAReRi~~LlD~gSF~E~~g~~~~~~~~~l~~~~~~~~~~dgvV~G~G~I~Gr~v~v~a~D~t~~GGS~G~~~g~Ki 83 (274)
T TIGR03133 4 YEANARERARGLLDAGSFRELLGPFDRVISPHLPRQGIVPQFDDGVVVGRGTIDGKPVVVAAQEGRFQGGSVGEVHGAKI 83 (274)
T ss_pred ccCCHHHHHHHhcCCCcceEcccccccccCcchhhhcccCCCCCeEEEEEEEECCEEEEEEEECCCccCcCCCHHHHHHH
Confidence 456899999999999999999 22 125799999999999999999998 99999999999
Q ss_pred HHHHHHHhc-----CCCcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCC--CCEEEEEcCC--CCchhhhhhccC
Q 048389 388 AHFIELCTQ-----RKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAK--VPKVTIIVGG--SFGAGNYAMCGR 458 (566)
Q Consensus 388 ar~i~l~~~-----~~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~--vP~isvi~g~--~~Ggg~~am~~~ 458 (566)
++.+++|.+ .++|+|+|+||+|..+ +|..-.+..+++++.++...+ +|+|+||+|+ |+||++|..+
T Consensus 84 ~r~~e~A~~~~~~~~~~PvV~l~dSgGaRl---qEg~~~L~~~a~i~~~~~~ls~~vP~Isvv~Gp~gc~GG~a~~a~-- 158 (274)
T TIGR03133 84 VGALRLAIEDNRKGQPTAVVLLLDTGGVRL---QEANAGLIAIAEIMRAILDARAAVPVIGVIGGRVGCFGGMGIAAG-- 158 (274)
T ss_pred HHHHHHHHhhhhccCCCCEEEEEcCCCcCh---hhhHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCcchHHHHHHh--
Confidence 999999987 6789999999999854 333222334567665544433 9999999999 8999776433
Q ss_pred CCCCCEEEEecCceeeccCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHHhhCCHHHHHhCcccceecCc-
Q 048389 459 AYSPNFMFLWPNARISVMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEKEGNAYYSTARLWDDGIIDP- 537 (566)
Q Consensus 459 ~~~~d~~~A~p~A~i~vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~aa~~g~iD~II~p- 537 (566)
.+|+++|.|++++++.||+++...+-. .+.+.+|+. |.- +....+ .....|.+|.+++.
T Consensus 159 --l~D~vim~~~a~i~~aGP~VIe~~~G~----------e~~~~~d~~-----l~~--~~lGG~-~~~~sG~~D~~v~dd 218 (274)
T TIGR03133 159 --LCSYLIMTEEGRLGLSGPEVIEQEAGV----------EEFDSRDRA-----LVW--RTTGGK-HRFLSGDADVLVEDD 218 (274)
T ss_pred --cCCEEEEeCCcEEeccCHHHHHHhcCC----------CccCHHHhc-----ccc--cccchH-hHhhcccceEEeCCH
Confidence 369999999999999999987765421 123333321 100 011122 34458999999997
Q ss_pred -hhhHHHHHHHHHH
Q 048389 538 -ADTRKIIGFCISA 550 (566)
Q Consensus 538 -~~tR~~L~~~L~~ 550 (566)
...|+.+..+|+.
T Consensus 219 ~~a~~~~~~~~l~~ 232 (274)
T TIGR03133 219 VDAFRAAVIAALAL 232 (274)
T ss_pred HHHHHHHHHHHHhc
Confidence 7778888777765
No 37
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=99.86 E-value=2e-21 Score=202.14 Aligned_cols=156 Identities=22% Similarity=0.372 Sum_probs=127.2
Q ss_pred HHhhHhcCCCCHHHHHHhccCCCCCceeccccccccccccccCCCcEEEEEEEECCEEEEEEEecCccccccCChHHHHH
Q 048389 70 VKRNRSRNKLLPRERIDRLTDPGSSFLELSQLAGHELYEETLQSGGIITGIGPVHGRLCMFVANDPTVKGGTYFPITIKK 149 (566)
Q Consensus 70 ~~~~~~~g~l~areri~~L~D~gS~F~El~~l~~~~~~~~~~~~~gvvtG~G~I~Gr~v~v~a~D~tv~gGs~g~~~~~K 149 (566)
|.-+..+..+++||.|..++|..- |.|+.+. +++.+||||+|++|++|++++|||.|+||+++...+.|
T Consensus 304 Iv~~~~~~~yd~r~vi~~iVD~~~-f~E~~~~----------y~~tlvtGfarlnG~tVgIvgnn~kf~~G~L~s~sa~K 372 (536)
T KOG0540|consen 304 IVPLNLTKAYDVREVIARIVDGSR-FFEFKPG----------YGDTLVTGFARLNGRTVGIVGNNPKFAGGVLFSESAVK 372 (536)
T ss_pred ccccccccccchHhHHHhhcccch-hhhhccc----------cccceeeeeeeECCEEEEEeccCchhcccccchhhhhh
Confidence 444556677999999999999765 9999765 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEcCCCCCCCccccccCc-hhhHHHHHHHHHHHcCCCcCEEEEEecccccccccc---ccCCC
Q 048389 150 HLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPD-KENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAYI---PAMAD 225 (566)
Q Consensus 150 ~~r~~~lA~~~~lPlV~l~dsgGarl~~~~~~~~~-~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG~ay~---~a~~d 225 (566)
..|++++|.+++||||+|+|++| +|++.+..... ..+.+++.++. +.++||.|++++|+++|| +|. .+++.
T Consensus 373 garfIe~c~q~~IPLi~l~ni~G-fm~g~~~e~~gIaK~gAklv~a~---a~akvpkITiit~~syGG-~y~m~sr~~~g 447 (536)
T KOG0540|consen 373 GARFIELCDQRNIPLIFLQNITG-FMVGRAAEAGGIAKHGAKLVYAV---ACAKVPKITIITGGSYGG-NYAMCSRGYSG 447 (536)
T ss_pred hHHHHHHHHhcCCcEEEEEccCC-ccccchhhhhchhhhhhhhhhhh---hhccCceEEEEecCccCC-cccccccccCC
Confidence 99999999999999999999999 67654422211 12334555543 445899999999999995 553 45554
Q ss_pred eeEEEecceeEEeccH
Q 048389 226 ESVMVKGNGTIFLAGP 241 (566)
Q Consensus 226 ~vi~v~~~a~i~~~GP 241 (566)
.++.+||+|+|.++|-
T Consensus 448 d~~yawP~A~IavmG~ 463 (536)
T KOG0540|consen 448 DINYAWPNARIAVMGG 463 (536)
T ss_pred ceeEEcccceeeeccc
Confidence 4566799999999996
No 38
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=99.81 E-value=6e-19 Score=180.62 Aligned_cols=150 Identities=21% Similarity=0.279 Sum_probs=125.0
Q ss_pred CCCCCHHHHhhhhccCCccccc-cc-------c---------ccceEEEEEEEECCeEEEEEEeC-----CccCHHHHHH
Q 048389 329 KQSFDIRSVIARIVDGSEFDEF-KK-------L---------YGTTLVTGFAKIFGQPVGIIGNN-----GILFHESALK 386 (566)
Q Consensus 329 ~~~~d~r~ii~~l~D~~sf~E~-~~-------~---------~g~~vv~G~arI~G~~Vgvvan~-----G~l~~~~a~K 386 (566)
-...++||+|+.|+|++||.|+ .+ . .+.++|+|+|+|+|+||.|++++ |+++...++|
T Consensus 12 ~~~ltARERi~~LlD~gSF~E~~g~~~~~~~~~~~~~~~~~~~~dGvV~G~G~I~Gr~v~v~a~D~tf~GGS~G~~~g~K 91 (301)
T PRK07189 12 FIEASARERAAALLDAGSFRELLGPFERVMSPHLPLQGIPPQFDDGVVVGKGTLDGRPVVVAAQEGRFMGGSVGEVHGAK 91 (301)
T ss_pred ceeCCHHHHHHHhcCCCcceEcccccccccCcchhhhccCCCCCCcEEEEEEEECCEEEEEEEECCCccCcCcCHHHHHH
Confidence 3557899999999999999999 22 1 24699999999999999999998 9999999999
Q ss_pred HHHHHHHHhcCC-----CcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCC--CCEEEEEcCC--CCchhhhhhcc
Q 048389 387 GAHFIELCTQRK-----IPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAK--VPKVTIIVGG--SFGAGNYAMCG 457 (566)
Q Consensus 387 ~ar~i~l~~~~~-----iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~--vP~isvi~g~--~~Ggg~~am~~ 457 (566)
++|.+++|.+.+ +|+|+|.||+|..+ +|..-.+..+++++.++...+ ||+|+||.|+ |+||+++..+
T Consensus 92 i~r~~e~A~~~~~~~~~~PvV~l~dSGGaRl---qEg~~~L~~~a~i~~~~~~ls~~VP~I~vv~G~~gc~GG~a~~a~- 167 (301)
T PRK07189 92 LAGALELAAEDNRNGIPTAVLLLFETGGVRL---QEANAGLAAIAEIMRAIVDLRAAVPVIGLIGGRVGCFGGMGIAAA- 167 (301)
T ss_pred HHHHHHHHHHhCCCCCCCCEEEEecCCCcCc---cchHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCcHHHHHHHh-
Confidence 999999999999 99999999999855 333323345577765544433 9999999998 9999887532
Q ss_pred CCCCCCEEEEecCceeeccCHHHHHHHH
Q 048389 458 RAYSPNFMFLWPNARISVMGGAQAAGVL 485 (566)
Q Consensus 458 ~~~~~d~~~A~p~A~i~vmg~e~aa~i~ 485 (566)
.+|+++|.|+++|++.||+.+....
T Consensus 168 ---l~D~iIm~~~a~iglaGP~VIe~~~ 192 (301)
T PRK07189 168 ---LCSYLIVSEEGRLGLSGPEVIEQEA 192 (301)
T ss_pred ---cCCEEEEECCcEEeccCHHHHHHhc
Confidence 3699999999999999999877754
No 39
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=99.79 E-value=2e-19 Score=179.20 Aligned_cols=215 Identities=21% Similarity=0.285 Sum_probs=162.9
Q ss_pred HHHHHHHHHHHHHHHHHcC-----CChhHHHhhHhcCCCCHHHHHHhccCCCCCceeccccccccccccccCCCcEEEEE
Q 048389 46 VMQGLVSELQSHIQKVLGG-----GGESAVKRNRSRNKLLPRERIDRLTDPGSSFLELSQLAGHELYEETLQSGGIITGI 120 (566)
Q Consensus 46 ~~~~~~~~l~~~~~~~~~~-----gg~~~~~~~~~~g~l~areri~~L~D~gS~F~El~~l~~~~~~~~~~~~~gvvtG~ 120 (566)
.....++.|+.+.+..... ..-++++.-+--.|.+..+.|+.|||+ |.|+ ++++.|. .+..+|.|+
T Consensus 31 ~~~~eI~~Le~~~~~~~~~iy~~L~~wq~~q~ARhp~RP~tldyi~~i~~d---f~eL---~GDR~f~---dD~Aivggl 101 (317)
T COG0825 31 DLSDEIERLEKRLAELTKKIYSNLTPWQRVQLARHPDRPYTLDYIELLFTD---FVEL---HGDRAFA---DDPAIVGGL 101 (317)
T ss_pred chHHHHHHHHhhHHHHhhhhhccCCHHHHHHHhhCCCCCcHHHHHHHHHhH---HHHh---cCccccC---cChhheeee
Confidence 3455555565555544322 233445555555789999999999986 8887 4555553 246899999
Q ss_pred EEECCEEEEEEEecCcc--------ccccCChHHHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccccccCchhhHHHHH
Q 048389 121 GPVHGRLCMFVANDPTV--------KGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIF 192 (566)
Q Consensus 121 G~I~Gr~v~v~a~D~tv--------~gGs~g~~~~~K~~r~~~lA~~~~lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~ 192 (566)
+|++|+||+|+.++-.. .=|.-.+.+.+|..|++++|.++++|+|+|+||+||..+-..+.. .|...|.
T Consensus 102 ar~~G~pv~vIG~qKG~dtk~~~~rNFGm~~PeGyRKAlRlm~~AekF~lPiitfIDT~GAypG~~AEEr---GQ~eAIA 178 (317)
T COG0825 102 ARFGGQPVVVIGHQKGRDTKEKLKRNFGMPRPEGYRKALRLMKLAEKFGLPIITFIDTPGAYPGIGAEER---GQSEAIA 178 (317)
T ss_pred eeECCeeEEEEeeecCccchhHHHhcCCCCCchHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCcchhhc---ccHHHHH
Confidence 99999999999999654 236666999999999999999999999999999999987666543 4556788
Q ss_pred HHHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEeccHHHHHhhhcccccc-------cCCCccccccc
Q 048389 193 YNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEISA-------EDLGGAAVHCK 265 (566)
Q Consensus 193 ~~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~GP~vv~~~~ge~v~~-------e~lGga~~h~~ 265 (566)
+++.+|+.+.||+||+|+|..-+|||...+.+|.|.|.+ +++..+..|+--.+.+=++-+. ..+...++.
T Consensus 179 ~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle-~s~ySVisPEG~AsILWkD~~ka~eAAe~mkita~dLk-- 255 (317)
T COG0825 179 RNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLE-NSTYSVISPEGCASILWKDASKAKEAAEAMKITAHDLK-- 255 (317)
T ss_pred HHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHH-hceeeecChhhhhhhhhcChhhhHHHHHHcCCCHHHHH--
Confidence 888899999999999999999999999989999999986 6999999999766555443321 122222233
Q ss_pred ccCcceEEEc
Q 048389 266 TSGVSDYFAQ 275 (566)
Q Consensus 266 ~sG~~d~v~~ 275 (566)
..|++|-|++
T Consensus 256 ~lgiID~II~ 265 (317)
T COG0825 256 ELGIIDGIIP 265 (317)
T ss_pred hCCCcceecc
Confidence 5788888775
No 40
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=99.75 E-value=1.3e-17 Score=163.93 Aligned_cols=173 Identities=23% Similarity=0.260 Sum_probs=141.6
Q ss_pred ceEEEEEEEE-CCeEEEEEEeC--CccCHHHHHHHHHHHH--HHhcCCCcEEEEEecCCCCCchHHHhcchHHHHHHHHH
Q 048389 356 TTLVTGFAKI-FGQPVGIIGNN--GILFHESALKGAHFIE--LCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVM 430 (566)
Q Consensus 356 ~~vv~G~arI-~G~~Vgvvan~--G~l~~~~a~K~ar~i~--l~~~~~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~ 430 (566)
..++.|.+.. ++++|.||.+. |.++-+.+.++|+.+. +.+..+.|||+|+||||+.+|+.+|.-|+.++.|.+..
T Consensus 17 ~~v~~g~~~~~~~~~iaVvg~~~~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~sQa~grreEllGi~~alAhla~ 96 (234)
T PF06833_consen 17 VQVLDGEAGGEDGRFIAVVGDANHGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPSQAYGRREELLGINQALAHLAK 96 (234)
T ss_pred cceEEeeccccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCccccchHHHHhhHHHHHHHHHH
Confidence 4688998888 89999999874 9999999999999887 45789999999999999999999999999998887776
Q ss_pred HHHc---CCCCEEEEEcCCCCchhhhhhccCCCCCCEEEEecCceeeccCHHHHHHHHhhhhhhhhhhcCCCCchHHHHH
Q 048389 431 AVSC---AKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEM 507 (566)
Q Consensus 431 a~~~---a~vP~isvi~g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~ 507 (566)
+|.. +++|+|++|+|++.+|||++. +|.+|.+||+|++++.||+.+++++|+++ +.|+.++
T Consensus 97 a~a~AR~~GHpvI~Lv~G~A~SGaFLA~---GlqA~rl~AL~ga~i~vM~~~s~ARVTk~-------------~ve~Le~ 160 (234)
T PF06833_consen 97 AYALARLAGHPVIGLVYGKAMSGAFLAH---GLQANRLIALPGAMIHVMGKPSAARVTKR-------------PVEELEE 160 (234)
T ss_pred HHHHHHHcCCCeEEEEecccccHHHHHH---HHHhcchhcCCCCeeecCChHHhHHHhhc-------------CHHHHHH
Confidence 6554 789999999999999999988 56789999999999999999999999863 2332222
Q ss_pred HHHHHHHHHHhhCCHHHH------HhCcccceecC---chhhHHHHHHHHHHhhC
Q 048389 508 FKAKVVEAYEKEGNAYYS------TARLWDDGIID---PADTRKIIGFCISAALN 553 (566)
Q Consensus 508 ~~~~l~~~~~~~~~~~~a------a~~g~iD~II~---p~~tR~~L~~~L~~~~~ 553 (566)
+ .+++|.++ .+.|.++++|+ +...++.+...+.....
T Consensus 161 l---------a~s~PvfA~gi~ny~~lG~l~~l~~~~~~~~~~~~~~~~v~~~l~ 206 (234)
T PF06833_consen 161 L---------AKSVPVFAPGIENYAKLGALDELWDGDLADQPAEALAAQVQEALA 206 (234)
T ss_pred H---------hhcCCCcCCCHHHHHHhccHHHHhcccccccccHHHHHHHHHHHH
Confidence 2 22455544 57899999999 45566666666655433
No 41
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=98.67 E-value=7.6e-06 Score=91.48 Aligned_cols=362 Identities=13% Similarity=0.095 Sum_probs=187.7
Q ss_pred cccCChHHHHHHHHHHHHHH-h-CCCcEEEEEc------CCCCCCCccccc-cCchhhHHHH----HHHH-HHHcCCCcC
Q 048389 139 GGTYFPITIKKHLRAQEIAA-Q-CKLPCIYLVD------SGGAYLPKQAEV-FPDKENFGRI----FYNQ-AIMSAEGIP 204 (566)
Q Consensus 139 gGs~g~~~~~K~~r~~~lA~-~-~~lPlV~l~d------sgGarl~~~~~~-~~~~~~~~~i----~~~~-a~ls~~~VP 204 (566)
.=++.......+..+++.+. + ..+.+|.|.- |+|+.+.+-... ......+... +..+ ..+....+|
T Consensus 42 ~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkP 121 (546)
T TIGR03222 42 LNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLK 121 (546)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCC
Confidence 34788888888888888776 3 4577777752 345544321000 0000001111 1111 112234689
Q ss_pred EEEEEeccccccccccccCCCeeEEEec-ceeEEec-----c--HH------HHH-hhhccc------ccccCCCccccc
Q 048389 205 QIALVLGSCTAGGAYIPAMADESVMVKG-NGTIFLA-----G--PP------LVK-AATGEE------ISAEDLGGAAVH 263 (566)
Q Consensus 205 ~isvv~G~~~GG~ay~~a~~d~vi~v~~-~a~i~~~-----G--P~------vv~-~~~ge~------v~~e~lGga~~h 263 (566)
+|+.|-|.|+|||..+...||++|+.+. ++++.+. | |. ++. ..+|.. ++.+.+.+.+.+
T Consensus 122 vIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~ 201 (546)
T TIGR03222 122 FLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAK 201 (546)
T ss_pred EEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCccchhhhccccchhCHHHHHHHHHcCCCccHHHHH
Confidence 9999999999999999889999998763 2333320 1 11 110 111210 123344444445
Q ss_pred ccccCcceEEEcchhHHHHHHHHHHHhccccCCCCCcCCCCCCCCCCCCCCCChHHHhhhcccCCCCCCCHHHHhhhhcc
Q 048389 264 CKTSGVSDYFAQDELHGLSLGRNIIKNLHMAGRQGEINGFQNINPEYKEPLYDVKELYSIAPADLKQSFDIRSVIARIVD 343 (566)
Q Consensus 264 ~~~sG~~d~v~~de~~a~~~~r~~ls~Lp~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~p~~~~~~~d~r~ii~~l~D 343 (566)
..|++|.+++++ +..+.+.++...+-.... . |. + .+ =..+.| |++-.|
T Consensus 202 --~~GLV~~vv~~~-~l~~~a~~lA~~la~~~p-~------~~----~-~~-----~~~~~~------------~~~~~~ 249 (546)
T TIGR03222 202 --EWRLVDEVVKPS-QFDAAIAERAAELAAQSD-R------PA----D-AK-----GVQLTP------------LERTID 249 (546)
T ss_pred --HcCCceEEeChH-HHHHHHHHHHHHHHhCCC-C------Cc----C-CC-----ceeeee------------hhhhcc
Confidence 589999999754 344555555444321111 0 00 0 00 001111 111111
Q ss_pred CC--ccccccccc--cceEEEEEEEECCeEE-------EEEEeC-CccCHHHHHHHHHHHHHHh--cCCCcEEEEEecC-
Q 048389 344 GS--EFDEFKKLY--GTTLVTGFAKIFGQPV-------GIIGNN-GILFHESALKGAHFIELCT--QRKIPLVFLQNIT- 408 (566)
Q Consensus 344 ~~--sf~E~~~~~--g~~vv~G~arI~G~~V-------gvvan~-G~l~~~~a~K~ar~i~l~~--~~~iPlV~l~dt~- 408 (566)
.+ .|.++.-.+ ... ++.-+|+.-.. .||+.. .+|+.+..+.+...++.++ ...+-+|.|.=.+
T Consensus 250 ~~~~~~~~~~v~~~~~~~--va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~ 327 (546)
T TIGR03222 250 EDGVRYPTVDVAIDRAAR--TATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGD 327 (546)
T ss_pred cCCcceeeEEEEEeccCC--EEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCC
Confidence 11 122221111 111 23344553222 244443 6789999999999888765 3677777776543
Q ss_pred C-CCCchHH--Hh-------cchHHHHHHHHHHHHcCCCCEEEEE-cCCCCchh-h-hhhccCCCCCCEEEE-------e
Q 048389 409 G-FMVGSRS--EA-------NGIAKAGAKMVMAVSCAKVPKVTII-VGGSFGAG-N-YAMCGRAYSPNFMFL-------W 468 (566)
Q Consensus 409 G-~~~g~~~--E~-------~g~~~~~a~~~~a~~~a~vP~isvi-~g~~~Ggg-~-~am~~~~~~~d~~~A-------~ 468 (566)
. |..|-+- +. ...+....+++..+....+|+|+.| -|.|+||| . +++ .+|++|| -
T Consensus 328 ~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLal-----acD~~ia~~~~~~~~ 402 (546)
T TIGR03222 328 AELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAF-----AADRSYMLAFPDNND 402 (546)
T ss_pred CceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHH-----hCceeeecCCCCCCC
Confidence 1 4444331 10 1112233447788999999999999 89999998 3 333 3577777 5
Q ss_pred cCcee-------eccCHHHHHHHHhhhhhhhhhhc-CCCCchHHHHHHHHHHHHHHH-hhCCHHHHHhCcccceecCchh
Q 048389 469 PNARI-------SVMGGAQAAGVLSQVEKDKKKKQ-GIEWTKQEEEMFKAKVVEAYE-KEGNAYYSTARLWDDGIIDPAD 539 (566)
Q Consensus 469 p~A~i-------~vmg~e~aa~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~-~~~~~~~aa~~g~iD~II~p~~ 539 (566)
|++++ |+.+.-+....+.+. - |.. . ....++. +. +..++..+.+.|+++.|+++.+
T Consensus 403 ~~a~f~~~e~~lGl~p~~gg~~~L~~~-------v~G~~----~--a~~~~~~--ltg~~i~A~eA~~~Glv~~vv~~~~ 467 (546)
T TIGR03222 403 PEPAITLSELNFGLYPMVNGLSRLATR-------FYAEP----A--PVAAVRD--KIGQALDAEEAERLGLVTAAPDDID 467 (546)
T ss_pred CCCEEeCCccccccCCCcCcHHHHHHH-------hcCch----h--HHHHHHH--HhCCCCCHHHHHHcCCcccccCchH
Confidence 55554 444332222222110 0 100 0 0001111 11 1257778889999999999988
Q ss_pred hHHHHHHHHHHhhCC
Q 048389 540 TRKIIGFCISAALNR 554 (566)
Q Consensus 540 tR~~L~~~L~~~~~~ 554 (566)
+.+....+.+.+..+
T Consensus 468 l~~~a~~~a~~la~~ 482 (546)
T TIGR03222 468 WEDEIRIALEERASF 482 (546)
T ss_pred HHHHHHHHHHHHHhc
Confidence 776666666555543
No 42
>PF03255 ACCA: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (6.4.1.2 from EC). It catalyses the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association []. The reaction involves two steps: Biotin carrier protein + ATP + HCO3 - -> Carboxybiotin carrier protein + ADP + Pi Carboxybiotin carrier protein + Acetyl-CoA -> Malonyl-CoA + Biotin carrier protein ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex; PDB: 2F9I_A 2F9Y_A.
Probab=98.65 E-value=8.3e-08 Score=87.83 Aligned_cols=85 Identities=24% Similarity=0.332 Sum_probs=59.9
Q ss_pred CChhHHHhhHhcCCCCHHHHHHhccCCCCCceeccccccccccccccCCCcEEEEEEEECCEEEEEEEecC--------c
Q 048389 65 GGESAVKRNRSRNKLLPRERIDRLTDPGSSFLELSQLAGHELYEETLQSGGIITGIGPVHGRLCMFVANDP--------T 136 (566)
Q Consensus 65 gg~~~~~~~~~~g~l~areri~~L~D~gS~F~El~~l~~~~~~~~~~~~~gvvtG~G~I~Gr~v~v~a~D~--------t 136 (566)
-.-+++...+...|.++.+.|+.|||. |.|+. |++.|. -+.++|+|+|+++|+||+|++++- .
T Consensus 53 t~w~~V~~aRhp~Rp~~~dyI~~l~~d---f~Elh---GDR~~~---dD~AivgG~a~~~g~~V~vig~~KG~~~~e~~~ 123 (145)
T PF03255_consen 53 TPWQRVQLARHPDRPTALDYIENLFDD---FIELH---GDRLFG---DDPAIVGGIARFDGQPVTVIGQQKGRDTKENIK 123 (145)
T ss_dssp -HHHHHHHHTBTTS--HHHHHHHH-EE---EEE-------SSS------TTEEEEEEEETTEEEEEEEE---SSCCHHHH
T ss_pred CHHHHHHHhhCCCCCCHHHHHHHHhCc---CeEec---CCccCC---cCccceeeeEEECCEEEEEEEEecCcCHHHHHH
Confidence 345667777777999999999999996 99983 444443 246899999999999999999995 3
Q ss_pred cccccCChHHHHHHHHHHHHHH
Q 048389 137 VKGGTYFPITIKKHLRAQEIAA 158 (566)
Q Consensus 137 v~gGs~g~~~~~K~~r~~~lA~ 158 (566)
...|+..|.+.+|..|++++|.
T Consensus 124 rNFGm~~PeGYRKAlRlmk~Ae 145 (145)
T PF03255_consen 124 RNFGMPHPEGYRKALRLMKQAE 145 (145)
T ss_dssp TGGG---HHHHHHHHHHHHHHH
T ss_pred HcCCCCCcchHHHHHHHHHhcC
Confidence 4579999999999999999984
No 43
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=98.52 E-value=5.1e-07 Score=89.50 Aligned_cols=137 Identities=19% Similarity=0.216 Sum_probs=109.5
Q ss_pred CCCcEEEEEEEE-CCEEEEEEEecCccccccCChHHHHHHHHHHHHH--HhCCCcEEEEEcCCCCCCCccccccCchhhH
Q 048389 112 QSGGIITGIGPV-HGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIA--AQCKLPCIYLVDSGGAYLPKQAEVFPDKENF 188 (566)
Q Consensus 112 ~~~gvvtG~G~I-~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA--~~~~lPlV~l~dsgGarl~~~~~~~~~~~~~ 188 (566)
....++.|-+.. +++.+.|+.+.- .|.+|-.++.++.+.+.-. ...+-|||.++|++|-+++..+|.++....+
T Consensus 15 ~~~~v~~g~~~~~~~~~iaVvg~~~---~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~sQa~grreEllGi~~al 91 (234)
T PF06833_consen 15 ASVQVLDGEAGGEDGRFIAVVGDAN---HGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPSQAYGRREELLGINQAL 91 (234)
T ss_pred cccceEEeeccccCCcEEEEEecCC---CCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCccccchHHHHhhHHHHH
Confidence 356799999888 889999998775 8999999999999888644 4568999999999999998888876543344
Q ss_pred HHHHHHHHHHcCCCcCEEEEEeccccccccccccC-CCeeEEEecceeEEeccHHHHHhhhcccc
Q 048389 189 GRIFYNQAIMSAEGIPQIALVLGSCTAGGAYIPAM-ADESVMVKGNGTIFLAGPPLVKAATGEEI 252 (566)
Q Consensus 189 ~~i~~~~a~ls~~~VP~isvv~G~~~GG~ay~~a~-~d~vi~v~~~a~i~~~GP~vv~~~~ge~v 252 (566)
+....+++..+..|.|+|++|.|++.+|+...-++ +|.++.. +++.+-+++.+.+..+|-..+
T Consensus 92 Ahla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~rl~AL-~ga~i~vM~~~s~ARVTk~~v 155 (234)
T PF06833_consen 92 AHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANRLIAL-PGAMIHVMGKPSAARVTKRPV 155 (234)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcchhcC-CCCeeecCChHHhHHHhhcCH
Confidence 55555555555568999999999999987766554 8887655 489999999999888887544
No 44
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=98.49 E-value=3e-06 Score=94.90 Aligned_cols=369 Identities=14% Similarity=0.094 Sum_probs=186.9
Q ss_pred ccCChHHHHHHHHHHHHHH-h-CCCcEEEEEc------CCCCCCCccccccC----chhhHH-HHHHHH-HHHcCCCcCE
Q 048389 140 GTYFPITIKKHLRAQEIAA-Q-CKLPCIYLVD------SGGAYLPKQAEVFP----DKENFG-RIFYNQ-AIMSAEGIPQ 205 (566)
Q Consensus 140 Gs~g~~~~~K~~r~~~lA~-~-~~lPlV~l~d------sgGarl~~~~~~~~----~~~~~~-~i~~~~-a~ls~~~VP~ 205 (566)
-++.......+..+++.+. + ..+-+|.|.- |+|+.+.+-..... ...... ..+..+ ..+....+|+
T Consensus 47 Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPv 126 (550)
T PRK08184 47 NSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKF 126 (550)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCE
Confidence 3788888888888888876 3 4566666653 23343321000000 000000 111111 1233346899
Q ss_pred EEEEeccccccccccccCCCeeEEEec-ceeEEe-----cc--H------HHHH-hhhcc----c--ccccCCCcccccc
Q 048389 206 IALVLGSCTAGGAYIPAMADESVMVKG-NGTIFL-----AG--P------PLVK-AATGE----E--ISAEDLGGAAVHC 264 (566)
Q Consensus 206 isvv~G~~~GG~ay~~a~~d~vi~v~~-~a~i~~-----~G--P------~vv~-~~~ge----~--v~~e~lGga~~h~ 264 (566)
|+.|-|.|+|||..++..||++|+.+. .+++++ -| | .++. ...|. + ++.+.+.+.+.+
T Consensus 127 IAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~- 205 (550)
T PRK08184 127 IAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAV- 205 (550)
T ss_pred EEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHH-
Confidence 999999999999999889999887753 244322 11 1 1110 01111 0 123344444455
Q ss_pred cccCcceEEEcchhHHHHHHHHHHHhccccCCCCCcCCCCCCCCCCCCCCCChHHHhhhcccCCCCCCCHHHHhhhhccC
Q 048389 265 KTSGVSDYFAQDELHGLSLGRNIIKNLHMAGRQGEINGFQNINPEYKEPLYDVKELYSIAPADLKQSFDIRSVIARIVDG 344 (566)
Q Consensus 265 ~~sG~~d~v~~de~~a~~~~r~~ls~Lp~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~p~~~~~~~d~r~ii~~l~D~ 344 (566)
.-|++|.+++++ +..+.+.++..-+-.+... + . +.......|. . +.+|. |+
T Consensus 206 -~~GLVd~vv~~d-~l~~~a~~~A~~ia~~~~~-~---~-~~~~~~~~~~------------~--~~~~~--------~~ 256 (550)
T PRK08184 206 -DWRLVDEVVKPS-KFDAKVAERAAELAAASDR-P---A-DAKGVALTPL------------E--RTIDA--------DG 256 (550)
T ss_pred -HcCCccEeeCHH-HHHHHHHHHHHHHHhCCCC-C---C-CCCccccccc------------c--ccccC--------Cc
Confidence 479999999754 5556666665544221110 0 0 0000001111 0 11111 11
Q ss_pred Cccccccc--cccceEEEEEEEECCeE-------EEEEEeC-CccCHHHHHHHHHHHHHHh--cCCCcEEEEEecC--CC
Q 048389 345 SEFDEFKK--LYGTTLVTGFAKIFGQP-------VGIIGNN-GILFHESALKGAHFIELCT--QRKIPLVFLQNIT--GF 410 (566)
Q Consensus 345 ~sf~E~~~--~~g~~vv~G~arI~G~~-------Vgvvan~-G~l~~~~a~K~ar~i~l~~--~~~iPlV~l~dt~--G~ 410 (566)
=.|.-+.- ..... ++.-++|--. .|||+.+ .+|+.+....+..+++-++ ...+-.|.|.-.+ .|
T Consensus 257 ~~~~~~~v~~~~~~~--va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F 334 (550)
T PRK08184 257 LRYRHVDVEIDRAAR--TATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAA 334 (550)
T ss_pred eeeEEEEEEEEccCC--EEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcE
Confidence 01111100 00011 1112222111 2445444 5789999999999888765 3567777776644 25
Q ss_pred CCchH---HHh------cchHHHHHHHHHHHHcCCCCEEEEEc-CCCCchh-h-hhhc-cCCC-C-------CCEEEEec
Q 048389 411 MVGSR---SEA------NGIAKAGAKMVMAVSCAKVPKVTIIV-GGSFGAG-N-YAMC-GRAY-S-------PNFMFLWP 469 (566)
Q Consensus 411 ~~g~~---~E~------~g~~~~~a~~~~a~~~a~vP~isvi~-g~~~Ggg-~-~am~-~~~~-~-------~d~~~A~p 469 (566)
..|.+ .+. ....+...+++..+....+|+|+.|- |.|+||| . ++++ +.-+ . ++-.|.+|
T Consensus 335 ~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~p 414 (550)
T PRK08184 335 VLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLS 414 (550)
T ss_pred EeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECc
Confidence 54443 111 11223334567788899999999996 9999988 3 2332 2111 1 23344555
Q ss_pred CceeeccCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHH-hhCCHHHHHhCcccceecCchhhHHHHHHHH
Q 048389 470 NARISVMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYE-KEGNAYYSTARLWDDGIIDPADTRKIIGFCI 548 (566)
Q Consensus 470 ~A~i~vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L 548 (566)
..++|+++.-+....+.+.- -| ... + .++.-.+. +..++..+.+.|+|++|+++.++.+......
T Consensus 415 e~~~Gl~p~~gg~~~L~r~~------vG----~~~--A--~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a 480 (550)
T PRK08184 415 ALNFGLYPMVNGLSRLARRF------YG----EPD--P--LAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIAL 480 (550)
T ss_pred cccccCCCCCCcHHHhHHHh------cC----hHH--H--HHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHH
Confidence 55666665443333222100 01 000 0 01100011 1257778889999999999988777666666
Q ss_pred HHhhCC
Q 048389 549 SAALNR 554 (566)
Q Consensus 549 ~~~~~~ 554 (566)
+.+..+
T Consensus 481 ~~ia~~ 486 (550)
T PRK08184 481 EERASL 486 (550)
T ss_pred HHHHhC
Confidence 655544
No 45
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=98.29 E-value=1.1e-05 Score=78.19 Aligned_cols=94 Identities=17% Similarity=0.227 Sum_probs=71.8
Q ss_pred EEEeCCccCHHHHHHHHHHHHHHhcCC-CcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEc---CCC
Q 048389 372 IIGNNGILFHESALKGAHFIELCTQRK-IPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIV---GGS 447 (566)
Q Consensus 372 vvan~G~l~~~~a~K~ar~i~l~~~~~-iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~---g~~ 447 (566)
+|--+|.++...+..+.+.++.|...+ -+|++.+||||- ....+-.++.++.....|+|+.|. |.+
T Consensus 3 vv~i~g~I~~~~~~~l~~~l~~a~~~~~~~vvl~InSpGG----------~v~~~~~i~~~l~~~~kPvia~v~~~~G~A 72 (187)
T cd07020 3 VLEINGAITPATADYLERAIDQAEEGGADALIIELDTPGG----------LLDSTREIVQAILASPVPVVVYVYPSGARA 72 (187)
T ss_pred EEEEeeEEChHHHHHHHHHHHHHHhCCCCEEEEEEECCCC----------CHHHHHHHHHHHHhCCCCEEEEEecCCCCc
Confidence 444457778888888888888877665 557777899994 334444666677788999999998 999
Q ss_pred CchhhhhhccCCCCCCEEEEecCceeeccCHH
Q 048389 448 FGAGNYAMCGRAYSPNFMFLWPNARISVMGGA 479 (566)
Q Consensus 448 ~Ggg~~am~~~~~~~d~~~A~p~A~i~vmg~e 479 (566)
.|||++..+ .+|+++|-|+++++..++-
T Consensus 73 asgG~~ial----a~D~iva~p~a~~g~~~~~ 100 (187)
T cd07020 73 ASAGTYILL----AAHIAAMAPGTNIGAAHPV 100 (187)
T ss_pred hhHHHHHHH----hCCceeECCCCcEEecccc
Confidence 999987443 3689999999999986654
No 46
>PF03255 ACCA: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (6.4.1.2 from EC). It catalyses the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association []. The reaction involves two steps: Biotin carrier protein + ATP + HCO3 - -> Carboxybiotin carrier protein + ADP + Pi Carboxybiotin carrier protein + Acetyl-CoA -> Malonyl-CoA + Biotin carrier protein ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex; PDB: 2F9I_A 2F9Y_A.
Probab=98.29 E-value=1.9e-06 Score=79.05 Aligned_cols=64 Identities=25% Similarity=0.402 Sum_probs=47.9
Q ss_pred CCCCHHHHhhhhccCCcccccccc--c--cceEEEEEEEECCeEEEEEEeC-------------CccCHHHHHHHHHHHH
Q 048389 330 QSFDIRSVIARIVDGSEFDEFKKL--Y--GTTLVTGFAKIFGQPVGIIGNN-------------GILFHESALKGAHFIE 392 (566)
Q Consensus 330 ~~~d~r~ii~~l~D~~sf~E~~~~--~--g~~vv~G~arI~G~~Vgvvan~-------------G~l~~~~a~K~ar~i~ 392 (566)
.+....++|..|||+ |+|+..+ | .+++|+|+|+++|+||.||+.+ |+..|++.+|+.|+++
T Consensus 65 ~Rp~~~dyI~~l~~d--f~ElhGDR~~~dD~AivgG~a~~~g~~V~vig~~KG~~~~e~~~rNFGm~~PeGYRKAlRlmk 142 (145)
T PF03255_consen 65 DRPTALDYIENLFDD--FIELHGDRLFGDDPAIVGGIARFDGQPVTVIGQQKGRDTKENIKRNFGMPHPEGYRKALRLMK 142 (145)
T ss_dssp TS--HHHHHHHH-EE--EEE----SSS---TTEEEEEEEETTEEEEEEEE---SSCCHHHHTGGG---HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhCc--CeEecCCccCCcCccceeeeEEECCEEEEEEEEecCcCHHHHHHHcCCCCCcchHHHHHHHHH
Confidence 445788999999997 9999875 3 4799999999999999999974 9999999999999999
Q ss_pred HHh
Q 048389 393 LCT 395 (566)
Q Consensus 393 l~~ 395 (566)
+|+
T Consensus 143 ~Ae 145 (145)
T PF03255_consen 143 QAE 145 (145)
T ss_dssp HHH
T ss_pred hcC
Confidence 874
No 47
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=98.23 E-value=3.4e-05 Score=74.40 Aligned_cols=94 Identities=13% Similarity=0.117 Sum_probs=76.3
Q ss_pred EEEEeCCccCHHHHHHHHHHHHHHhcCC-CcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCc
Q 048389 371 GIIGNNGILFHESALKGAHFIELCTQRK-IPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFG 449 (566)
Q Consensus 371 gvvan~G~l~~~~a~K~ar~i~l~~~~~-iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~G 449 (566)
.++--+|.+++..+..+.|.++.+.+.+ -.||+..||||- ....+-.+...+..+.+|++++|.+.+.|
T Consensus 2 ~vi~i~g~I~~~~~~~l~~~l~~a~~~~~~~ivl~inspGG----------~v~~~~~I~~~l~~~~~pvva~V~g~AaS 71 (178)
T cd07021 2 YVIPIEGEIDPGLAAFVERALKEAKEEGADAVVLDIDTPGG----------RVDSALEIVDLILNSPIPTIAYVNDRAAS 71 (178)
T ss_pred EEEEEeeEECHHHHHHHHHHHHHHHhCCCCeEEEEEECcCC----------CHHHHHHHHHHHHhCCCCEEEEECCchHH
Confidence 4555568899988999999998887765 568888999994 45555667788888999999999999999
Q ss_pred hhhhhhccCCCCCCEEEEecCceeeccCH
Q 048389 450 AGNYAMCGRAYSPNFMFLWPNARISVMGG 478 (566)
Q Consensus 450 gg~~am~~~~~~~d~~~A~p~A~i~vmg~ 478 (566)
+|++-.+ .+|+++|-|++.+|..+|
T Consensus 72 aG~~ia~----a~d~i~m~p~a~iG~~~~ 96 (178)
T cd07021 72 AGALIAL----AADEIYMAPGATIGAAEP 96 (178)
T ss_pred HHHHHHH----hCCeEEECCCCeEecCee
Confidence 9877432 369999999999998776
No 48
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.22 E-value=1.2e-05 Score=76.99 Aligned_cols=145 Identities=12% Similarity=0.131 Sum_probs=96.9
Q ss_pred EEEeCCccCHHHHHHHHHHHHHHhcCC-CcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEc---CCC
Q 048389 372 IIGNNGILFHESALKGAHFIELCTQRK-IPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIV---GGS 447 (566)
Q Consensus 372 vvan~G~l~~~~a~K~ar~i~l~~~~~-iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~---g~~ 447 (566)
++--+|.+++..+.-+.|.++.|.+.+ -+|++.+||||- ....+-.+..++...++|+++++. +.+
T Consensus 3 vi~i~G~I~~~~~~~l~~~l~~A~~~~~~~i~l~inSPGG----------~v~~~~~I~~~i~~~~~pvv~~v~p~g~~A 72 (172)
T cd07015 3 VAQIKGQITSYTYDQFDRYITIAEQDNAEAIIIELDTPGG----------RADAAGNIVQRIQQSKIPVIIYVYPPGASA 72 (172)
T ss_pred EEEEeeEECHhHHHHHHHHHHHHhcCCCCeEEEEEECCCC----------CHHHHHHHHHHHHhcCcCEEEEEecCCCee
Confidence 444468888888888889999887654 579999999995 333444566777888999999999 888
Q ss_pred CchhhhhhccCCCCCCEEEEecCceeeccCHHHHH-----------HHHh---hhhhhhhhhcCCCCchHHHHHHHHHHH
Q 048389 448 FGAGNYAMCGRAYSPNFMFLWPNARISVMGGAQAA-----------GVLS---QVEKDKKKKQGIEWTKQEEEMFKAKVV 513 (566)
Q Consensus 448 ~Ggg~~am~~~~~~~d~~~A~p~A~i~vmg~e~aa-----------~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~ 513 (566)
.++|+|.+++ +|.++|.|++++|..+|-... ++.. ..-+..+++.|++.+ ..++.+.
T Consensus 73 aSag~~I~~a----~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~-----~a~~~v~ 143 (172)
T cd07015 73 ASAGTYIALG----SHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNAT-----IAEEFIT 143 (172)
T ss_pred hhHHHHHHHh----cCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHH-----HHHHHHH
Confidence 8888876543 577999999999998884310 0100 000011222232211 1111222
Q ss_pred HHHHhhCCHHHHHhCcccceecCc
Q 048389 514 EAYEKEGNAYYSTARLWDDGIIDP 537 (566)
Q Consensus 514 ~~~~~~~~~~~aa~~g~iD~II~p 537 (566)
+ ....++..+.+.|++|.|+.-
T Consensus 144 ~--~~~lta~EA~~~G~iD~ia~~ 165 (172)
T cd07015 144 K--DLSLTPEEALKYGVIEVVARD 165 (172)
T ss_pred h--hcCcCHHHHHHcCCceeeeCC
Confidence 1 123689999999999999985
No 49
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=97.91 E-value=3.8e-05 Score=74.53 Aligned_cols=126 Identities=24% Similarity=0.227 Sum_probs=85.9
Q ss_pred ccCChHHHHHHHHHHHHHHhCCCc-EEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEe---ccccc
Q 048389 140 GTYFPITIKKHLRAQEIAAQCKLP-CIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVL---GSCTA 215 (566)
Q Consensus 140 Gs~g~~~~~K~~r~~~lA~~~~lP-lV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~---G~~~G 215 (566)
|.++......+.+.++.|.+.+.. ++..+||+|..+.. .-.++..+. ...+|+|+.|. |.|+|
T Consensus 8 g~I~~~~~~~l~~~l~~a~~~~~~~vvl~InSpGG~v~~----------~~~i~~~l~---~~~kPvia~v~~~~G~Aas 74 (187)
T cd07020 8 GAITPATADYLERAIDQAEEGGADALIIELDTPGGLLDS----------TREIVQAIL---ASPVPVVVYVYPSGARAAS 74 (187)
T ss_pred eEEChHHHHHHHHHHHHHHhCCCCEEEEEEECCCCCHHH----------HHHHHHHHH---hCCCCEEEEEecCCCCchh
Confidence 556677788999999998887744 66667999965421 123343332 23689999999 99999
Q ss_pred cccccccCCCeeEEEecceeEEeccHH-------------------------HHHhhhcccc--------cccCCCcccc
Q 048389 216 GGAYIPAMADESVMVKGNGTIFLAGPP-------------------------LVKAATGEEI--------SAEDLGGAAV 262 (566)
Q Consensus 216 G~ay~~a~~d~vi~v~~~a~i~~~GP~-------------------------vv~~~~ge~v--------~~e~lGga~~ 262 (566)
||+++...||++++. ++++++..+|. .+-..+|... +.+-+.+.+-
T Consensus 75 gG~~iala~D~iva~-p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA 153 (187)
T cd07020 75 AGTYILLAAHIAAMA-PGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRNAEWAEKAVRESLSLTAEEA 153 (187)
T ss_pred HHHHHHHhCCceeEC-CCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCeecHHHH
Confidence 999999899998875 67888885553 1222334321 1123444444
Q ss_pred cccccCcceEEEcchhHHH
Q 048389 263 HCKTSGVSDYFAQDELHGL 281 (566)
Q Consensus 263 h~~~sG~~d~v~~de~~a~ 281 (566)
+ ..|++|.+++++++.+
T Consensus 154 ~--~~Glvd~v~~~~~~~~ 170 (187)
T cd07020 154 L--KLGVIDLIAADLNELL 170 (187)
T ss_pred H--HcCCcccccCCHHHHH
Confidence 4 5899999998865554
No 50
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=97.70 E-value=0.0014 Score=64.38 Aligned_cols=142 Identities=14% Similarity=0.113 Sum_probs=90.1
Q ss_pred CccCHHHHHHHHHHHHHHhc--CCCcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhh-
Q 048389 377 GILFHESALKGAHFIELCTQ--RKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNY- 453 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~--~~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~- 453 (566)
|.++...+..+..-+...+. ..-||.+..||||- ....+-.+.+.+...+.|+.+++.|.|++.|++
T Consensus 38 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG----------~v~~g~~I~d~i~~~~~~v~t~~~G~aaS~a~~I 107 (200)
T PRK00277 38 GEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGG----------SVTAGLAIYDTMQFIKPDVSTICIGQAASMGAFL 107 (200)
T ss_pred CEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCC----------cHHHHHHHHHHHHhcCCCEEEEEEeEeccHHHHH
Confidence 66777777776665554443 45789999999994 344556777888888899999999999998876
Q ss_pred hhccCCCCCCEEEEecCceeeccCHHHH-----HHH------Hhhh----hhhhhhhcCCCCchHHHHHHHHHHHHHHHh
Q 048389 454 AMCGRAYSPNFMFLWPNARISVMGGAQA-----AGV------LSQV----EKDKKKKQGIEWTKQEEEMFKAKVVEAYEK 518 (566)
Q Consensus 454 am~~~~~~~d~~~A~p~A~i~vmg~e~a-----a~i------~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 518 (566)
++++ ..+..++.|++++++..|-+. ..+ +.+. .....++-|. +.++ +.+.+.. +.
T Consensus 108 ~~ag---~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~--~~~~---i~~~~~~--~~ 177 (200)
T PRK00277 108 LAAG---AKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQ--PLEK---IEKDTDR--DN 177 (200)
T ss_pred HhcC---CCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCc--CHHH---HHHHhhC--Cc
Confidence 4443 235689999999988766421 111 1000 0001222221 1221 2121111 12
Q ss_pred hCCHHHHHhCcccceecCch
Q 048389 519 EGNAYYSTARLWDDGIIDPA 538 (566)
Q Consensus 519 ~~~~~~aa~~g~iD~II~p~ 538 (566)
..+|..+.+.|++|+|++..
T Consensus 178 ~lsa~EA~e~GliD~Ii~~~ 197 (200)
T PRK00277 178 FMSAEEAKEYGLIDEVLTKR 197 (200)
T ss_pred cccHHHHHHcCCccEEeecC
Confidence 36899999999999999863
No 51
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=97.61 E-value=0.0018 Score=73.61 Aligned_cols=84 Identities=12% Similarity=0.137 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhc-CC-CcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhhhhccCCC
Q 048389 383 SALKGAHFIELCTQ-RK-IPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAY 460 (566)
Q Consensus 383 ~a~K~ar~i~l~~~-~~-iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~am~~~~~ 460 (566)
+.+.+.+.++.+.. .+ -.||+-+|+||-++-.. ..+.+.+..+...+.|+++.+-+-|.+||||..+
T Consensus 330 ~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as-------e~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~---- 398 (584)
T TIGR00705 330 GGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS-------EIIRRELARAQARGKPVIVSMGAMAASGGYWIAS---- 398 (584)
T ss_pred CHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH-------HHHHHHHHHHHhCCCcEEEEECCccccHHHHHHH----
Confidence 45667777776543 33 47888899999754222 1223455556667799999999999999998654
Q ss_pred CCCEEEEecCceeeccC
Q 048389 461 SPNFMFLWPNARISVMG 477 (566)
Q Consensus 461 ~~d~~~A~p~A~i~vmg 477 (566)
.+|.+||-|++.+|.+|
T Consensus 399 aaD~I~a~p~t~~GSIG 415 (584)
T TIGR00705 399 AADYIVASPNTITGSIG 415 (584)
T ss_pred hCCEEEECCCCeeecCE
Confidence 36999999998875444
No 52
>PRK10949 protease 4; Provisional
Probab=97.58 E-value=0.0081 Score=68.55 Aligned_cols=84 Identities=19% Similarity=0.152 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHh-cCC-CcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhhhhccCCC
Q 048389 383 SALKGAHFIELCT-QRK-IPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAY 460 (566)
Q Consensus 383 ~a~K~ar~i~l~~-~~~-iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~am~~~~~ 460 (566)
+++.+++.++-+. ..+ --||.-+|+||-.+...+| +.+.+..+...+.|+++.+-+-+..||||..+.
T Consensus 348 ~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~-------i~~~i~~~r~~gKPVvas~~~~aASggY~iA~a--- 417 (618)
T PRK10949 348 GGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEV-------IRAELAAARAAGKPVVVSMGGMAASGGYWISTP--- 417 (618)
T ss_pred CHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHH-------HHHHHHHHHhcCCcEEEEECCCCccHHHHHHHh---
Confidence 4556667776553 233 4578889999975533222 344455556678999998888888899986553
Q ss_pred CCCEEEEecCceeeccC
Q 048389 461 SPNFMFLWPNARISVMG 477 (566)
Q Consensus 461 ~~d~~~A~p~A~i~vmg 477 (566)
+|-+||-|++.+|.+|
T Consensus 418 -ad~I~a~p~t~tGSIG 433 (618)
T PRK10949 418 -ANYIVASPSTLTGSIG 433 (618)
T ss_pred -cCEEEECCCCceeeCc
Confidence 6999999976655544
No 53
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=97.53 E-value=0.0008 Score=63.39 Aligned_cols=83 Identities=16% Similarity=0.019 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhhhhccCCCC
Q 048389 382 ESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYS 461 (566)
Q Consensus 382 ~~a~K~ar~i~l~~~~~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~am~~~~~~ 461 (566)
..+..+.+.++.+... -||++.+||||-. ...+-.+...+.....|+++++.+.|.|+|++..+ .
T Consensus 15 ~~~~~~~~~l~~~~~~-~~i~l~inspGG~----------~~~~~~i~~~i~~~~~pvi~~v~g~a~s~g~~ia~----a 79 (160)
T cd07016 15 VTAKEFKDALDALGDD-SDITVRINSPGGD----------VFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAM----A 79 (160)
T ss_pred cCHHHHHHHHHhccCC-CCEEEEEECCCCC----------HHHHHHHHHHHHhcCCCEEEEEcchHHhHHHHHHh----c
Confidence 4566777777766554 8999999999953 33345667777888999999999999999887544 3
Q ss_pred CCEEEEecCceeeccCHH
Q 048389 462 PNFMFLWPNARISVMGGA 479 (566)
Q Consensus 462 ~d~~~A~p~A~i~vmg~e 479 (566)
+|.++|-|++.+++..+.
T Consensus 80 ~d~~~~~~~a~~~~~~~~ 97 (160)
T cd07016 80 GDEVEMPPNAMLMIHNPS 97 (160)
T ss_pred CCeEEECCCcEEEEECCc
Confidence 588999999999876654
No 54
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=97.51 E-value=0.0013 Score=64.92 Aligned_cols=162 Identities=18% Similarity=0.164 Sum_probs=93.1
Q ss_pred EEEEEeCCccCHHHHHHHHHHHHHHhc-CC-CcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcC--CCCEEEEEcC
Q 048389 370 VGIIGNNGILFHESALKGAHFIELCTQ-RK-IPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCA--KVPKVTIIVG 445 (566)
Q Consensus 370 Vgvvan~G~l~~~~a~K~ar~i~l~~~-~~-iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a--~vP~isvi~g 445 (566)
|.|+--+|.+. .+.+.+.+.++.+.. .+ ..||+-.|++|..+.. +..+..++... +.|+++.+-+
T Consensus 2 v~vi~i~g~i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~----------~~~l~~~i~~~~~~kpvia~v~g 70 (207)
T TIGR00706 2 IAILPVSGAIA-VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVA----------SEEIYEKLKKLKAKKPVVASMGG 70 (207)
T ss_pred EEEEEEEEEEe-cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHH----------HHHHHHHHHHhcCCCCEEEEECC
Confidence 34444455554 345566666665542 33 4678889999865422 22333444444 5999999999
Q ss_pred CCCchhhhhhccCCCCCCEEEEecCceeeccCHHH----HHHHHhhh--h-----hhhhhhcCC---CCchHHHHHHHHH
Q 048389 446 GSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGAQ----AAGVLSQV--E-----KDKKKKQGI---EWTKQEEEMFKAK 511 (566)
Q Consensus 446 ~~~Ggg~~am~~~~~~~d~~~A~p~A~i~vmg~e~----aa~i~~~~--~-----~~~~~~~~~---~~~~~~~~~~~~~ 511 (566)
.+.|+|++..+ .+|.+||-|++.+|..|.-. ....+.+. + ..+-|..+. ++++++++.+++.
T Consensus 71 ~a~s~g~~la~----aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~ 146 (207)
T TIGR00706 71 VAASGGYYIAM----AADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNL 146 (207)
T ss_pred ccchHHHHHHh----cCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHH
Confidence 99988887543 36999999999887655432 11111110 0 000111111 2345554444433
Q ss_pred HHHHHHh-----------------------hCCHHHHHhCcccceecCchhhHHHHHH
Q 048389 512 VVEAYEK-----------------------EGNAYYSTARLWDDGIIDPADTRKIIGF 546 (566)
Q Consensus 512 l~~~~~~-----------------------~~~~~~aa~~g~iD~II~p~~tR~~L~~ 546 (566)
|.+.|+. .-++..+.+.|+||+|....+..++|..
T Consensus 147 l~~~~~~f~~~va~~R~~~~~~~~~~~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~~~ 204 (207)
T TIGR00706 147 VNESYEQFVQVVAKGRNLPVEDVKKFADGRVFTGRQALKLRLVDKLGTEDDALKWLAE 204 (207)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHhcCCcccHHHHHHcCCCcccCCHHHHHHHHHH
Confidence 3333321 1245556789999999998888777654
No 55
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=97.51 E-value=0.0022 Score=61.55 Aligned_cols=144 Identities=16% Similarity=0.076 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHh-cCCCc-EEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhhhhccCCC
Q 048389 383 SALKGAHFIELCT-QRKIP-LVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAY 460 (566)
Q Consensus 383 ~a~K~ar~i~l~~-~~~iP-lV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~am~~~~~ 460 (566)
+...+.+.++.+. ..++- ||+-.|++|..+.. .....+++..+..++.|+|+.+-|.+.|+|++-.+
T Consensus 23 ~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~-------~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~---- 91 (177)
T cd07014 23 SGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTA-------SEVIRAELAAARAAGKPVVASGGGNAASGGYWIST---- 91 (177)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHH-------HHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHH----
Confidence 3456666666554 34555 55557888864322 12345577778889999999999999999987543
Q ss_pred CCCEEEEecCceeeccCHHHHHH----HHhhhhhh----hhhhcCCCCchHHHHHHHHHHHHHHHhhCCHHHHHhCcccc
Q 048389 461 SPNFMFLWPNARISVMGGAQAAG----VLSQVEKD----KKKKQGIEWTKQEEEMFKAKVVEAYEKEGNAYYSTARLWDD 532 (566)
Q Consensus 461 ~~d~~~A~p~A~i~vmg~e~aa~----i~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~aa~~g~iD 532 (566)
.+|++||-|++.++..|.-.... .+...... -.+..+ ++.+. .++.+.+. .-.++..+.+.|+||
T Consensus 92 a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg--~~~~~---~~~~l~~g--~~~~a~~A~~~GLVD 164 (177)
T cd07014 92 PANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRH--STPEQ---QIDKIAQG--GVWTGQDAKANGLVD 164 (177)
T ss_pred hCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCC--CCHHH---hHHHhcCc--CeEeHHHHHHcCCcc
Confidence 36999999999999988643211 11110000 011111 22211 11112110 124788899999999
Q ss_pred eecCchhhHHHH
Q 048389 533 GIIDPADTRKII 544 (566)
Q Consensus 533 ~II~p~~tR~~L 544 (566)
+|..+.|+.+.|
T Consensus 165 ~v~~~~e~~~~l 176 (177)
T cd07014 165 SLGSFDDAVAKL 176 (177)
T ss_pred cCCCHHHHHHHh
Confidence 999998887765
No 56
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=97.48 E-value=0.00047 Score=67.88 Aligned_cols=98 Identities=15% Similarity=0.129 Sum_probs=70.9
Q ss_pred EEEEEeCCccC---HHHHHHHHHHHHHHhc-CCCc-EEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEc
Q 048389 370 VGIIGNNGILF---HESALKGAHFIELCTQ-RKIP-LVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIV 444 (566)
Q Consensus 370 Vgvvan~G~l~---~~~a~K~ar~i~l~~~-~~iP-lV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~ 444 (566)
|.++--+|.+. +.....+.+.++.+.. .++- ||+-.|++|..+... ....+.+..+..++.|+++++-
T Consensus 2 v~vi~i~g~i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~-------~~i~~~i~~~~~~~kpvia~v~ 74 (208)
T cd07023 2 IAVIDIEGTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVAS-------EEIYREIRRLRKAKKPVVASMG 74 (208)
T ss_pred EEEEEEEEEEcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHH-------HHHHHHHHHHHhcCCcEEEEEC
Confidence 44555557776 6778888888876643 3344 556689998765332 2345667778888999999999
Q ss_pred CCCCchhhhhhccCCCCCCEEEEecCceeeccCH
Q 048389 445 GGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGG 478 (566)
Q Consensus 445 g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~vmg~ 478 (566)
+.++|+|++..+ .+|.+||-|++.++..|.
T Consensus 75 g~~~s~g~~lA~----aaD~i~a~~~s~~g~iG~ 104 (208)
T cd07023 75 DVAASGGYYIAA----AADKIVANPTTITGSIGV 104 (208)
T ss_pred CcchhHHHHHHh----hCCEEEECCCCeEEeCcE
Confidence 999998887543 369999999999887665
No 57
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=97.45 E-value=0.0036 Score=61.85 Aligned_cols=91 Identities=20% Similarity=0.193 Sum_probs=70.0
Q ss_pred CccCHHHHHHHHHHHHHHhcC--CCcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhhh
Q 048389 377 GILFHESALKGAHFIELCTQR--KIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYA 454 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~~--~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~a 454 (566)
|.++...+..+.+.+...+.. .-||.+.+||||- ....+-.+.+++...+.|+++++.|.+.+.|++-
T Consensus 42 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG----------~v~~g~~I~d~i~~~~~~v~t~~~G~aaSaa~lI 111 (207)
T PRK12553 42 GQVDDASANDVMAQLLVLESIDPDRDITLYINSPGG----------SVTAGDAIYDTIQFIRPDVQTVCTGQAASAGAVL 111 (207)
T ss_pred ceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCC----------cHHHHHHHHHHHHhcCCCcEEEEEeehhhHHHHH
Confidence 667788888888777666543 5799999999994 4555667788888889999999999999988764
Q ss_pred hccCCCCCCEEEEecCceeeccCHH
Q 048389 455 MCGRAYSPNFMFLWPNARISVMGGA 479 (566)
Q Consensus 455 m~~~~~~~d~~~A~p~A~i~vmg~e 479 (566)
+++. ..+..+|.|++.+.+-.|.
T Consensus 112 ~~ag--~~~~R~~~p~s~imiH~p~ 134 (207)
T PRK12553 112 LAAG--TPGKRFALPNARILIHQPS 134 (207)
T ss_pred HHcC--CcCcEEECCCchhhhcCcc
Confidence 4331 1234789999998887775
No 58
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0025 Score=68.68 Aligned_cols=98 Identities=18% Similarity=0.209 Sum_probs=82.9
Q ss_pred CCeEEEEEEeCCccCHHHHHHHHHHHHHHhcCC-CcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEc
Q 048389 366 FGQPVGIIGNNGILFHESALKGAHFIELCTQRK-IPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIV 444 (566)
Q Consensus 366 ~G~~Vgvvan~G~l~~~~a~K~ar~i~l~~~~~-iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~ 444 (566)
.+.+|-++--+|.+++.++.-..|.++.+.+.| -.+|...||||- ....+-+++.++.++.+|++.++.
T Consensus 24 ~~~~v~vi~i~g~I~~~s~~~l~r~l~~A~~~~a~~vvl~ldTPGG----------l~~sm~~iv~~i~~s~vPV~~yv~ 93 (436)
T COG1030 24 AEKKVYVIEIDGAIDPASADYLQRALQSAEEENAAAVVLELDTPGG----------LLDSMRQIVRAILNSPVPVIGYVV 93 (436)
T ss_pred cCCeEEEEEecCccCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCc----------hHHHHHHHHHHHHcCCCCEEEEEc
Confidence 567888888999999999999999999999998 889999999994 556677889999999999888888
Q ss_pred CC---CCchhhh-hhccCCCCCCEEEEecCceeeccCH
Q 048389 445 GG---SFGAGNY-AMCGRAYSPNFMFLWPNARISVMGG 478 (566)
Q Consensus 445 g~---~~Ggg~~-am~~~~~~~d~~~A~p~A~i~vmg~ 478 (566)
.+ +.++|.| +| .+|+.+|-|+..||..-|
T Consensus 94 p~ga~AaSAGtyI~m-----~~hiaaMAPgT~iGaa~P 126 (436)
T COG1030 94 PDGARAASAGTYILM-----ATHIAAMAPGTNIGAATP 126 (436)
T ss_pred CCCcchhchhhHHHH-----hcChhhhCCCCcccccce
Confidence 64 6666655 55 468899999999987655
No 59
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.41 E-value=0.0029 Score=62.11 Aligned_cols=141 Identities=16% Similarity=0.063 Sum_probs=85.5
Q ss_pred CccCHHHHHHHHHHHHHHhc--CCCcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhhh
Q 048389 377 GILFHESALKGAHFIELCTQ--RKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYA 454 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~--~~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~a 454 (566)
|.+++..+.-+.+-+...+. ..-||.+..||||- ..-.+-.+.+++...+.|+++++.|.+++.|++-
T Consensus 30 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG----------~v~ag~aI~d~i~~~~~~V~t~v~G~AaSaaslI 99 (197)
T PRK14512 30 GEINKDLSELFQEKILLLEALDSKKPIFVYIDSEGG----------DIDAGFAIFNMIRFVKPKVFTIGVGLVASAAALI 99 (197)
T ss_pred CEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC----------CHHHHHHHHHHHHhCCCCEEEEEEeeeHhHHHHH
Confidence 55666666666655544443 45899999999994 4455667788888899999999999999988764
Q ss_pred -hccCCCCCCEEEEecCceeeccCHHHHH----H-HH------hhhh----hhhhhhcCCCCchHHHHHHHHHHHHHHHh
Q 048389 455 -MCGRAYSPNFMFLWPNARISVMGGAQAA----G-VL------SQVE----KDKKKKQGIEWTKQEEEMFKAKVVEAYEK 518 (566)
Q Consensus 455 -m~~~~~~~d~~~A~p~A~i~vmg~e~aa----~-i~------~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 518 (566)
+++. ....++.|++++.++.|.+.. . +- .+.+ ....++-|.+ .+ .+++.+.+. .
T Consensus 100 l~ag~---~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~--~~---~i~~~~~~d--~ 169 (197)
T PRK14512 100 FLAAK---KESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQE--LD---KVEKDTDRD--F 169 (197)
T ss_pred HhcCC---cCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcC--HH---HHHHhhhcC--c
Confidence 4442 233567777777666554321 1 10 0000 0011122211 11 122222221 1
Q ss_pred hCCHHHHHhCcccceecCc
Q 048389 519 EGNAYYSTARLWDDGIIDP 537 (566)
Q Consensus 519 ~~~~~~aa~~g~iD~II~p 537 (566)
-.+|..+.+.|++|.|++.
T Consensus 170 ~lta~EA~~yGliD~I~~~ 188 (197)
T PRK14512 170 WLDSSSAVKYGLVFEVVET 188 (197)
T ss_pred ccCHHHHHHcCCccEeecC
Confidence 2689999999999999974
No 60
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=97.41 E-value=0.00084 Score=66.39 Aligned_cols=84 Identities=19% Similarity=0.167 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHh-cCCCcEEEE-EecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhhhhccCCCC
Q 048389 384 ALKGAHFIELCT-QRKIPLVFL-QNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYS 461 (566)
Q Consensus 384 a~K~ar~i~l~~-~~~iPlV~l-~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~am~~~~~~ 461 (566)
...+.+.++.+. ..++-.|.| .|++|..+.... ...+.+..+..++.|+|+.+-+.++|+|++-.+ .
T Consensus 23 ~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~-------~~~~~l~~~~~~~kpVia~v~g~a~s~gy~la~----~ 91 (211)
T cd07019 23 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASE-------VIRAELAAARAAGKPVVVSAGGAAASGGYWIST----P 91 (211)
T ss_pred HHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHH-------HHHHHHHHHHhCCCCEEEEECCeehhHHHHHHH----h
Confidence 456666666554 446554444 899998663332 234556778888999999999999999887433 3
Q ss_pred CCEEEEecCceeeccCH
Q 048389 462 PNFMFLWPNARISVMGG 478 (566)
Q Consensus 462 ~d~~~A~p~A~i~vmg~ 478 (566)
+|.+||-|++.++..|.
T Consensus 92 aD~i~a~~~a~~gsiGv 108 (211)
T cd07019 92 ANYIVANPSTLTGSIGI 108 (211)
T ss_pred CCEEEEcCCCEEEEeEE
Confidence 69999999999887764
No 61
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=97.36 E-value=0.0092 Score=60.67 Aligned_cols=157 Identities=15% Similarity=0.099 Sum_probs=95.4
Q ss_pred CccCHHHHHHHHHHHHHHhcCCCcEEEEEecC-CCCCchHHHh-c-----------chHHHHHHHHHHHHcCCCCEEEEE
Q 048389 377 GILFHESALKGAHFIELCTQRKIPLVFLQNIT-GFMVGSRSEA-N-----------GIAKAGAKMVMAVSCAKVPKVTII 443 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~~~iPlV~l~dt~-G~~~g~~~E~-~-----------g~~~~~a~~~~a~~~a~vP~isvi 443 (566)
.+++.+....+.+.++.+++..+-+|.|.-.+ .|..|.+-.. . .+......++..+.....|+|+.|
T Consensus 21 Nal~~~~~~~l~~~l~~~~~d~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 100 (256)
T TIGR02280 21 NSFTAEMHLELREALERVERDDARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAV 100 (256)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCcEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 67899999999999998875556666665433 3444432111 0 011112345677888999999999
Q ss_pred cCCCCchhhh-hhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHH
Q 048389 444 VGGSFGAGNY-AMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEA 515 (566)
Q Consensus 444 ~g~~~Ggg~~-am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 515 (566)
-|.|+|||.. ++ ..|+++|.++++++. .++-+....+.+. +... ...++. .
T Consensus 101 ~G~a~GgG~~lal-----a~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~-----------vG~~----~a~~l~-l 159 (256)
T TIGR02280 101 NGVAAGAGANLAL-----ACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRL-----------VGRA----RAMGLA-M 159 (256)
T ss_pred CCeeehHHHHHHH-----hCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHH-----------hCHH----HHHHHH-H
Confidence 9999999864 33 368999988877764 2221222111110 0000 001110 0
Q ss_pred HHhhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 516 YEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 516 ~~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
.-+..++..+.+.|+||+|+++.++.+......+.+..+
T Consensus 160 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 198 (256)
T TIGR02280 160 LGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQ 198 (256)
T ss_pred cCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhC
Confidence 011256777889999999999988877766666655544
No 62
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=97.34 E-value=0.0068 Score=61.01 Aligned_cols=158 Identities=12% Similarity=0.082 Sum_probs=103.0
Q ss_pred CccCHHHHHHHHHHHHHHhc-CCCcEEEEEecCC-CCCchHH---------HhcchHHHHHHHHHHHHcCCCCEEEEEcC
Q 048389 377 GILFHESALKGAHFIELCTQ-RKIPLVFLQNITG-FMVGSRS---------EANGIAKAGAKMVMAVSCAKVPKVTIIVG 445 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~-~~iPlV~l~dt~G-~~~g~~~---------E~~g~~~~~a~~~~a~~~a~vP~isvi~g 445 (566)
.+++.+..+.+.++++.++. .++-+|.+.-.++ |..|.+- +.....+...+++..+....+|+|+.|-|
T Consensus 20 N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G 99 (245)
T PF00378_consen 20 NALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVNG 99 (245)
T ss_dssp TEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEESS
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhccccccccccchhhccccccchhhhhheeecccc
Confidence 68999999999999987765 4445777765553 3434331 22233445567888899999999999999
Q ss_pred CCCchhhhhhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHH-
Q 048389 446 GSFGAGNYAMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYE- 517 (566)
Q Consensus 446 ~~~Ggg~~am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 517 (566)
.++|||..-.+ .+|++||.+++.+++ .++-+....+.+. . ... ...++. +.
T Consensus 100 ~a~GgG~~lal----a~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~-~----------g~~----~a~~l~--l~g 158 (245)
T PF00378_consen 100 HAVGGGFELAL----ACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRL-I----------GPS----RARELL--LTG 158 (245)
T ss_dssp EEETHHHHHHH----HSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHH-H----------HHH----HHHHHH--HHT
T ss_pred ccccccccccc----ccceEEeecccceeeeecccCccccccccccccee-e----------ecc----cccccc--ccc
Confidence 99999874222 358898887777664 3333333333211 0 000 001110 11
Q ss_pred hhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCCC
Q 048389 518 KEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNRP 555 (566)
Q Consensus 518 ~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~~ 555 (566)
+..++..+.+.|+||.|+++.++.+......+.+...+
T Consensus 159 ~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~ 196 (245)
T PF00378_consen 159 EPISAEEALELGLVDEVVPDEELDEEALELAKRLAAKP 196 (245)
T ss_dssp CEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSC
T ss_pred ccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCC
Confidence 12477888999999999999998888888777776653
No 63
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=97.32 E-value=0.012 Score=60.01 Aligned_cols=158 Identities=14% Similarity=0.092 Sum_probs=96.5
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC--CCCCchHHHh---------cchHHHHHHHHHHHHcCCCCEEEEEc
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT--GFMVGSRSEA---------NGIAKAGAKMVMAVSCAKVPKVTIIV 444 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~--G~~~g~~~E~---------~g~~~~~a~~~~a~~~a~vP~isvi~ 444 (566)
.+++.+....+.+.++..+ ...+-+|.|.-.+ .|..|.+-.. .........++..+....+|+|+.|-
T Consensus 29 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 108 (256)
T PRK06143 29 NILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARIP 108 (256)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 6789999999998888765 4556667776544 3655543111 11122334567778889999999999
Q ss_pred CCCCchhhh-hhccCCCCCCEEEEecCceeecc------CHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHH
Q 048389 445 GGSFGAGNY-AMCGRAYSPNFMFLWPNARISVM------GGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYE 517 (566)
Q Consensus 445 g~~~Ggg~~-am~~~~~~~d~~~A~p~A~i~vm------g~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 517 (566)
|.|+|||.- ++ ..|+++|.++++++.. .+-+....+.+. +.... ..++. ..-
T Consensus 109 G~a~GgG~~lal-----acD~~ia~~~a~f~~pe~~~G~p~~~~~~~l~~~-----------iG~~~----a~~l~-l~g 167 (256)
T PRK06143 109 GWCLGGGLELAA-----ACDLRIAAHDAQFGMPEVRVGIPSVIHAALLPRL-----------IGWAR----TRWLL-LTG 167 (256)
T ss_pred CEEeehhHHHHH-----hCCEEEecCCCEEeCCccccCCCCccHHHHHHHh-----------cCHHH----HHHHH-HcC
Confidence 999999864 33 2577777665555431 222222222110 11100 01111 001
Q ss_pred hhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCCC
Q 048389 518 KEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNRP 555 (566)
Q Consensus 518 ~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~~ 555 (566)
+..++..+.+.|+||.|+++.++.+......+.+...+
T Consensus 168 ~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~ 205 (256)
T PRK06143 168 ETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCG 205 (256)
T ss_pred CcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCC
Confidence 23578889999999999999888887777766666543
No 64
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=97.31 E-value=0.0045 Score=58.17 Aligned_cols=89 Identities=25% Similarity=0.322 Sum_probs=65.6
Q ss_pred CccCHHHHHHHHHHHHHHhcC--CCcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhhh
Q 048389 377 GILFHESALKGAHFIELCTQR--KIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYA 454 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~~--~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~a 454 (566)
|.+++.....+.+.++.+... --+||+-.|++|..+ ..+-.+..++...+.|+++++.|.+.++|++-
T Consensus 6 g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~----------~~~~~i~~~l~~~~kpvva~~~g~~~s~g~~l 75 (161)
T cd00394 6 GVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRV----------DAGMNIVDALQASRKPVIAYVGGQAASAGYYI 75 (161)
T ss_pred eEEccchHHHHHHHHHHHHhCCCCceEEEEEECCCcCH----------HHHHHHHHHHHHhCCCEEEEECChhHHHHHHH
Confidence 566677777777877766543 356777789998633 22344556677778999999999999988874
Q ss_pred hccCCCCCCEEEEecCceeeccCHH
Q 048389 455 MCGRAYSPNFMFLWPNARISVMGGA 479 (566)
Q Consensus 455 m~~~~~~~d~~~A~p~A~i~vmg~e 479 (566)
.+ .+|.+|+-|++.+++.|+.
T Consensus 76 a~----~~d~~~~~~~a~~~~~g~~ 96 (161)
T cd00394 76 AT----AANKIVMAPGTRVGSHGPI 96 (161)
T ss_pred Hh----CCCEEEECCCCEEEEeeeE
Confidence 43 3689999999999987664
No 65
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=97.27 E-value=0.0023 Score=63.45 Aligned_cols=154 Identities=16% Similarity=0.088 Sum_probs=89.2
Q ss_pred cCHHHHHHHHHHHHHHh-cCCCcEEEE-EecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhhhhc
Q 048389 379 LFHESALKGAHFIELCT-QRKIPLVFL-QNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMC 456 (566)
Q Consensus 379 l~~~~a~K~ar~i~l~~-~~~iPlV~l-~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~am~ 456 (566)
+++.....+.+.++.+. ..++-.|+| .|++|..+... ..+.+.+..+.. +.|+|+.+-+.+.|+|++..+
T Consensus 22 ~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~-------~~l~~~l~~~~~-~KpViA~v~g~a~s~gy~lA~ 93 (214)
T cd07022 22 SGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGV-------FELADAIRAARA-GKPIVAFVNGLAASAAYWIAS 93 (214)
T ss_pred CCcccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHH-------HHHHHHHHHHhc-CCCEEEEECCchhhHHHHHHh
Confidence 34456677777777654 455655555 78887543211 223444444554 799999999999999988654
Q ss_pred cCCCCCCEEEEecCceeeccCHHH----HHHHHhhhhhh-------hhhhcC---CCCchHHHHHHHHHHHHHHHhh---
Q 048389 457 GRAYSPNFMFLWPNARISVMGGAQ----AAGVLSQVEKD-------KKKKQG---IEWTKQEEEMFKAKVVEAYEKE--- 519 (566)
Q Consensus 457 ~~~~~~d~~~A~p~A~i~vmg~e~----aa~i~~~~~~~-------~~~~~~---~~~~~~~~~~~~~~l~~~~~~~--- 519 (566)
.+|.+||-|++.++..|.-. ....+.+.-.+ .-|..+ .+.++++++.+++.+.+.|+..
T Consensus 94 ----~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~l~~~~~~f~~~ 169 (214)
T cd07022 94 ----AADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVDALYAMFVAA 169 (214)
T ss_pred ----cCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 36999999999987665422 11111110000 001111 1234555554444333333210
Q ss_pred -------------------CCHHHHHhCcccceecCchhhHHHH
Q 048389 520 -------------------GNAYYSTARLWDDGIIDPADTRKII 544 (566)
Q Consensus 520 -------------------~~~~~aa~~g~iD~II~p~~tR~~L 544 (566)
-++..+.+.|+||+|....|..++|
T Consensus 170 V~~~R~~~~~~~~~~~~~~~~~~~Al~~gLvD~i~~~~~~~~~~ 213 (214)
T cd07022 170 VARNRGLSAAAVRATEGGVFRGQEAVAAGLADAVGTLDDALAAL 213 (214)
T ss_pred HHHhCCCCHHHHHHhhcCeeeHHHHHHcCCCcccCCHHHHHHHh
Confidence 1345567889999999888877665
No 66
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=97.26 E-value=0.013 Score=59.79 Aligned_cols=158 Identities=13% Similarity=0.084 Sum_probs=96.7
Q ss_pred CccCHHHHHHHHHHHHHHhc-CCCcEEEEEecC--CCCCchHHHh----------cchHHHHHHHHHHHHcCCCCEEEEE
Q 048389 377 GILFHESALKGAHFIELCTQ-RKIPLVFLQNIT--GFMVGSRSEA----------NGIAKAGAKMVMAVSCAKVPKVTII 443 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~-~~iPlV~l~dt~--G~~~g~~~E~----------~g~~~~~a~~~~a~~~a~vP~isvi 443 (566)
.+++.+..+.+...++..++ ..+-+|.|.-.+ .|..|.+-.. ......+.+++..+.....|+|+.|
T Consensus 30 Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 109 (262)
T PRK06144 30 NAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAI 109 (262)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 67888888888888886654 456677776443 3555543111 0112234456777888999999999
Q ss_pred cCCCCchhhhhhccCCCCCCEEEEecCceeeccCHH--------HHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHH
Q 048389 444 VGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGA--------QAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEA 515 (566)
Q Consensus 444 ~g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~vmg~e--------~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 515 (566)
-|.|+|||.--.+ ..|+++|.+++++++-... +....+-+. +... ...++. .
T Consensus 110 ~G~a~GgG~~lal----a~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~-----------vG~~----~a~~l~-l 169 (262)
T PRK06144 110 AGACVGGGAAIAA----ACDLRIATPSARFGFPIARTLGNCLSMSNLARLVAL-----------LGAA----RVKDML-F 169 (262)
T ss_pred CCeeeehHHHHHH----hCCEEEecCCCEeechhHHhccCCCCccHHHHHHHH-----------hCHH----HHHHHH-H
Confidence 9999999864222 3699999998888763321 111111100 0000 001110 0
Q ss_pred HHhhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 516 YEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 516 ~~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
.-+..++..+.+.|+||+|+++.++.+...+..+.+..+
T Consensus 170 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~ 208 (262)
T PRK06144 170 TARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAH 208 (262)
T ss_pred cCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhC
Confidence 011257778889999999999988777666666555544
No 67
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=97.26 E-value=0.0053 Score=58.26 Aligned_cols=90 Identities=22% Similarity=0.129 Sum_probs=65.0
Q ss_pred CccCHHHHHHHHHHHHHHhcC--CCcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhhh
Q 048389 377 GILFHESALKGAHFIELCTQR--KIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYA 454 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~~--~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~a 454 (566)
|.++...+..+.+.+...+.. .-||++.+||||-. ...+-.+.+++...+.|+++++.|.++++|++-
T Consensus 7 g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~----------v~~~~~i~~~i~~~~~~v~~~~~g~aaS~~~~i 76 (162)
T cd07013 7 GEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGD----------VFAGMAIYDTIKFIKADVVTIIDGLAASMGSVI 76 (162)
T ss_pred cEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCc----------HHHHHHHHHHHHhcCCCceEEEEeehhhHHHHH
Confidence 566777788777777666543 37999999999953 344556778888888999999999999988875
Q ss_pred hccCCCCCCEEEEecCceeeccCH
Q 048389 455 MCGRAYSPNFMFLWPNARISVMGG 478 (566)
Q Consensus 455 m~~~~~~~d~~~A~p~A~i~vmg~ 478 (566)
.+.-. ....++.|++++.+-.|
T Consensus 77 ~~a~~--~g~r~~~p~a~~~ih~~ 98 (162)
T cd07013 77 AMAGA--KGKRFILPNAMMMIHQP 98 (162)
T ss_pred HHcCC--CCcEEEecCEEEEEccC
Confidence 44311 12467778888776544
No 68
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=97.25 E-value=0.013 Score=57.31 Aligned_cols=141 Identities=15% Similarity=0.117 Sum_probs=84.4
Q ss_pred CccCHHHHHHHHH-HHHHHh-cCCCcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhh-
Q 048389 377 GILFHESALKGAH-FIELCT-QRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNY- 453 (566)
Q Consensus 377 G~l~~~~a~K~ar-~i~l~~-~~~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~- 453 (566)
|.++...+..+.. ++.+-. ..+-||.+..||||- ....+-.+.+.+...+.|+.+++.|.+++.|++
T Consensus 33 g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG----------~v~~g~~I~d~l~~~~~~v~t~~~G~AaSaaslI 102 (191)
T TIGR00493 33 GEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPGG----------SITAGLAIYDTMQFIKPDVSTICIGQAASMGAFL 102 (191)
T ss_pred cEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCCC----------CHHHHHHHHHHHHhcCCCEEEEEEEeeccHHHHH
Confidence 5555555555444 333322 345789999999995 345566777888888889999999999998766
Q ss_pred hhccCCCCCCEEEEecCceeeccCHHHH-----HHH------Hhhhh----hhhhhhcCCCCchHHHHHHHHHHHHHHHh
Q 048389 454 AMCGRAYSPNFMFLWPNARISVMGGAQA-----AGV------LSQVE----KDKKKKQGIEWTKQEEEMFKAKVVEAYEK 518 (566)
Q Consensus 454 am~~~~~~~d~~~A~p~A~i~vmg~e~a-----a~i------~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 518 (566)
++++ ..+..++.|++++.+-.|.+. ..+ +...+ ....++-|.+ .+ ++++.+.. +.
T Consensus 103 ~~aG---~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~--~~---~i~~~~~~--~~ 172 (191)
T TIGR00493 103 LSAG---AKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQS--LE---QIEKDTER--DF 172 (191)
T ss_pred HhcC---CCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcC--HH---HHHHHhhC--Cc
Confidence 4544 234578889998888766421 111 11000 0012222221 21 12222211 12
Q ss_pred hCCHHHHHhCcccceecCc
Q 048389 519 EGNAYYSTARLWDDGIIDP 537 (566)
Q Consensus 519 ~~~~~~aa~~g~iD~II~p 537 (566)
-.++..+.+.|++|.||.+
T Consensus 173 ~lta~EA~~~GliD~ii~~ 191 (191)
T TIGR00493 173 FMSAEEAKEYGLIDSVLTR 191 (191)
T ss_pred cCcHHHHHHcCCccEEecC
Confidence 3688899999999999863
No 69
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=97.25 E-value=0.00079 Score=64.99 Aligned_cols=89 Identities=27% Similarity=0.181 Sum_probs=69.1
Q ss_pred ccCChHHHHHHHHHHHHHHhCCC-cEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEecccccccc
Q 048389 140 GTYFPITIKKHLRAQEIAAQCKL-PCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGA 218 (566)
Q Consensus 140 Gs~g~~~~~K~~r~~~lA~~~~l-PlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG~a 218 (566)
|.+++.....+.|.++.|.+.+. .+|...||+|..+. ..-.++..+. ...+|+++.|.|.|.++|+
T Consensus 8 g~I~~~~~~~l~~~l~~a~~~~~~~ivl~inspGG~v~----------~~~~I~~~l~---~~~~pvva~V~g~AaSaG~ 74 (178)
T cd07021 8 GEIDPGLAAFVERALKEAKEEGADAVVLDIDTPGGRVD----------SALEIVDLIL---NSPIPTIAYVNDRAASAGA 74 (178)
T ss_pred eEECHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCCHH----------HHHHHHHHHH---hCCCCEEEEECCchHHHHH
Confidence 77888889999999999999875 56677999996541 1223443332 2368999999999999999
Q ss_pred ccccCCCeeEEEecceeEEeccHH
Q 048389 219 YIPAMADESVMVKGNGTIFLAGPP 242 (566)
Q Consensus 219 y~~a~~d~vi~v~~~a~i~~~GP~ 242 (566)
++...||+++| .|++.|+..||-
T Consensus 75 ~ia~a~d~i~m-~p~a~iG~~~~v 97 (178)
T cd07021 75 LIALAADEIYM-APGATIGAAEPI 97 (178)
T ss_pred HHHHhCCeEEE-CCCCeEecCeeE
Confidence 99889999887 567888888764
No 70
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=97.25 E-value=0.018 Score=57.54 Aligned_cols=156 Identities=12% Similarity=0.099 Sum_probs=96.9
Q ss_pred CccCHHHHHHHHHHHHHHhcCCCcEEEEEecC-CCCCchHHH--------hcchHHHHHHHHHHHHcCCCCEEEEEcCCC
Q 048389 377 GILFHESALKGAHFIELCTQRKIPLVFLQNIT-GFMVGSRSE--------ANGIAKAGAKMVMAVSCAKVPKVTIIVGGS 447 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~~~iPlV~l~dt~-G~~~g~~~E--------~~g~~~~~a~~~~a~~~a~vP~isvi~g~~ 447 (566)
.+++++....+.+.++.++ .+.-+|.+.-.+ .|..|.+-. .....+.+-+++..+.....|+|+.|-|.+
T Consensus 24 Nal~~~~~~~l~~~l~~~~-~~~~vvvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a 102 (229)
T PRK06213 24 NALSPAMIDALNAALDQAE-DDRAVVVITGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACTGHA 102 (229)
T ss_pred CCCCHHHHHHHHHHHHHhh-ccCcEEEEeCCCCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCCCEEEEEcCee
Confidence 5788999999999888776 455677776644 244443211 111223344567788889999999999999
Q ss_pred Cchhhh-hhccCCCCCCEEEEecC-ceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHHh
Q 048389 448 FGAGNY-AMCGRAYSPNFMFLWPN-ARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEK 518 (566)
Q Consensus 448 ~Ggg~~-am~~~~~~~d~~~A~p~-A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 518 (566)
+|||.. ++ .+|+++|.++ +++++ ..+.+....+.+ + +... ..++-+.. -+
T Consensus 103 ~GgG~~lal-----~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~-------~----~g~~---~a~~lll~--g~ 161 (229)
T PRK06213 103 IAKGAFLLL-----SADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARD-------R----LTPS---AFQRAVIN--AE 161 (229)
T ss_pred eHHHHHHHH-----hCCeeeEecCCcEEECchhhhCCcCChHHHHHHHH-------H----cCHH---HHHHHHHc--Cc
Confidence 999865 33 3588888888 76654 223322222211 0 1110 00011110 11
Q ss_pred hCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 519 EGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 519 ~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
..++..+.+.|+||+|+++.++.+......+.+...
T Consensus 162 ~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 197 (229)
T PRK06213 162 MFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGL 197 (229)
T ss_pred ccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcC
Confidence 257888899999999999988877766666655544
No 71
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=97.25 E-value=0.0055 Score=61.07 Aligned_cols=153 Identities=12% Similarity=0.091 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHhc-CCCcE-EEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhhhhccC
Q 048389 381 HESALKGAHFIELCTQ-RKIPL-VFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGR 458 (566)
Q Consensus 381 ~~~a~K~ar~i~l~~~-~~iPl-V~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~am~~~ 458 (566)
..+.+.+.+.++.|.+ .++-. |+-.|+||+.+...+| +.+.+..+..+..|+++++-+ +.+||||..+
T Consensus 28 ~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~e-------l~~~i~~~~~~~kpVia~~~~-~~sggy~las-- 97 (222)
T cd07018 28 ELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEE-------LRQALERFRASGKPVIAYADG-YSQGQYYLAS-- 97 (222)
T ss_pred CccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHH-------HHHHHHHHHHhCCeEEEEeCC-CCchhhhhhh--
Confidence 4456677777776654 45554 4457999985544444 355666677788999998775 6677766433
Q ss_pred CCCCCEEEEecCceeeccCHHHHH----HHHhhhhhh-------hhhhcCC-----CCchHHHHHHHHHHHHHHHhh---
Q 048389 459 AYSPNFMFLWPNARISVMGGAQAA----GVLSQVEKD-------KKKKQGI-----EWTKQEEEMFKAKVVEAYEKE--- 519 (566)
Q Consensus 459 ~~~~d~~~A~p~A~i~vmg~e~aa----~i~~~~~~~-------~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~--- 519 (566)
.+|.+||-|++.++..|.-.-. ..+.+.-.. .-|..+. ++++++++.+++.+.+.|+..
T Consensus 98 --aad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l~~~~~~f~~~ 175 (222)
T cd07018 98 --AADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSLWDQYLAD 175 (222)
T ss_pred --hCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999998764221 111110000 0111111 245555555544444333321
Q ss_pred --------------------CCHHHHHhCcccceecCchhhHHHHH
Q 048389 520 --------------------GNAYYSTARLWDDGIIDPADTRKIIG 545 (566)
Q Consensus 520 --------------------~~~~~aa~~g~iD~II~p~~tR~~L~ 545 (566)
-++..+.+.|+||+|....|..++|.
T Consensus 176 Va~~R~~~~~~~~~~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~l~ 221 (222)
T cd07018 176 VAASRGLSPDALEALIDLGGDSAEEALEAGLVDGLAYRDELEARLK 221 (222)
T ss_pred HHHHcCCCHHHHHHHHHcCCcHHHHHHHCCCCCcCCcHHHHHHHHh
Confidence 13455678999999999888887764
No 72
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=97.25 E-value=0.014 Score=59.52 Aligned_cols=157 Identities=11% Similarity=0.067 Sum_probs=95.3
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC--CCCCchHHHh---------cchHHHHHHHHHHHHcCCCCEEEEEc
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT--GFMVGSRSEA---------NGIAKAGAKMVMAVSCAKVPKVTIIV 444 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~--G~~~g~~~E~---------~g~~~~~a~~~~a~~~a~vP~isvi~ 444 (566)
.+++.+....+.+.++.++ ...+-+|.|.-.+ .|..|.+-.. .........++..+.....|+|+.|-
T Consensus 24 Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 103 (258)
T PRK09076 24 NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAIN 103 (258)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 6788999999999888766 4566677776543 2555442111 11122344567788889999999999
Q ss_pred CCCCchhhh-hhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHH
Q 048389 445 GGSFGAGNY-AMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAY 516 (566)
Q Consensus 445 g~~~Ggg~~-am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 516 (566)
|.++|||.- ++ .+|+++|.++++++. ..+-+....+.+. +.... + .++. ..
T Consensus 104 G~a~GgG~~lal-----acD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-----------iG~~~--a--~~l~-l~ 162 (258)
T PRK09076 104 GYAMGGGLECAL-----ACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWL-----------VGEGW--A--KRMI-LC 162 (258)
T ss_pred CEEecHHHHHHH-----hCCEEEecCCCEeeCcccccCCCCCccHHHHHHHH-----------hCHHH--H--HHHH-Hc
Confidence 999999864 33 358888877766654 3333333323210 00100 0 1111 00
Q ss_pred HhhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 517 EKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 517 ~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
-+..++..+.+.|++|+|+++.++.+...+..+.+...
T Consensus 163 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~ 200 (258)
T PRK09076 163 GERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQ 200 (258)
T ss_pred CCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhC
Confidence 12247778889999999999987766655555544443
No 73
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=97.25 E-value=0.0039 Score=60.09 Aligned_cols=149 Identities=16% Similarity=0.138 Sum_probs=87.3
Q ss_pred ccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcCCC-----CCCCccccccCc---hhhHHHHHHH-HHHHcCCCcCEEE
Q 048389 138 KGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDSGG-----AYLPKQAEVFPD---KENFGRIFYN-QAIMSAEGIPQIA 207 (566)
Q Consensus 138 ~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~dsgG-----arl~~~~~~~~~---~~~~~~i~~~-~a~ls~~~VP~is 207 (566)
.-.++.....+.+.++++.+... .+-+|.|.-+++ ..+.+-...... ...+.+.+.. ...+....+|+|+
T Consensus 19 ~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia 98 (195)
T cd06558 19 KRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIA 98 (195)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 56789999999999999988874 455566654333 322110000000 0111111111 1223344799999
Q ss_pred EEeccccccccccccCCCeeEEEecceeEEeccH--------H---HHHhhhcccc------cccCCCcccccccccCcc
Q 048389 208 LVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGP--------P---LVKAATGEEI------SAEDLGGAAVHCKTSGVS 270 (566)
Q Consensus 208 vv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~GP--------~---vv~~~~ge~v------~~e~lGga~~h~~~sG~~ 270 (566)
++-|.|.|+|+.....||++|+.+ ++.+.+... . .+....|... +.+.+.+.+.. ..|++
T Consensus 99 ~v~G~a~g~G~~la~~~D~~i~~~-~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~l~g~~~~a~ea~--~~Glv 175 (195)
T cd06558 99 AVNGAALGGGLELALACDIRIAAE-DAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEAL--ELGLV 175 (195)
T ss_pred EECCeeecHHHHHHHhCCEEEecC-CCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHHHcCCccCHHHHH--HcCCC
Confidence 999999999999988899999865 566654221 0 1111111111 22334444444 58999
Q ss_pred eEEEcchhHHHHHHHHHHHh
Q 048389 271 DYFAQDELHGLSLGRNIIKN 290 (566)
Q Consensus 271 d~v~~de~~a~~~~r~~ls~ 290 (566)
|.++++ ++..+.+.++...
T Consensus 176 ~~~~~~-~~l~~~a~~~a~~ 194 (195)
T cd06558 176 DEVVPD-EELLAAALELARR 194 (195)
T ss_pred CeecCh-hHHHHHHHHHHhh
Confidence 999986 5677777777654
No 74
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=97.23 E-value=0.0036 Score=63.63 Aligned_cols=155 Identities=19% Similarity=0.142 Sum_probs=97.6
Q ss_pred EEEEEe-cCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcC-----CCCCCCccc---cccCchhhHHHHHHHHHH
Q 048389 128 CMFVAN-DPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDS-----GGAYLPKQA---EVFPDKENFGRIFYNQAI 197 (566)
Q Consensus 128 v~v~a~-D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~ds-----gGarl~~~~---~~~~~~~~~~~i~~~~a~ 197 (566)
|+++-- ++..+ =+++.....-+..+++.+... .+.+|.|.-+ +|+.+.+-. ........+.........
T Consensus 15 v~~itlnrp~~~-Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (257)
T COG1024 15 IAVITLNRPEKL-NALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRA 93 (257)
T ss_pred EEEEEecCcccc-cCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHH
Confidence 444444 44443 589999999999999999887 6777777654 444443210 000000111111111223
Q ss_pred HcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------cc--------HHH------HH-hhhccccccc
Q 048389 198 MSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------AG--------PPL------VK-AATGEEISAE 255 (566)
Q Consensus 198 ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~G--------P~v------v~-~~~ge~v~~e 255 (566)
+.....|+|+.|-|.|+|||.-+...||++|.. +++++++ .. |+. .+ ..||+.++++
T Consensus 94 l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~-~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~~l~ltg~~~~a~ 172 (257)
T COG1024 94 LADLPKPVIAAVNGYALGGGLELALACDIRIAA-EDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAA 172 (257)
T ss_pred HHhCCCCEEEEEcceEeechhhhhhcCCeEEec-CCcEecCcccccccCCCCcHHHHHHHhcCHHHHHHHHHcCCcCCHH
Confidence 444578999999999999999988889998865 5665543 21 111 11 2455556554
Q ss_pred CCCcccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 256 DLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 256 ~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
| .. ..|++|.++++.++..+.++++...+
T Consensus 173 e-----A~--~~Glv~~vv~~~~~l~~~a~~~a~~~ 201 (257)
T COG1024 173 E-----AL--ELGLVDEVVPDAEELLERALELARRL 201 (257)
T ss_pred H-----HH--HcCCcCeeeCCHHHHHHHHHHHHHHH
Confidence 4 33 58999999987777888888887765
No 75
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=97.23 E-value=0.0063 Score=59.82 Aligned_cols=144 Identities=15% Similarity=0.078 Sum_probs=88.5
Q ss_pred CccCHHHHHHHHH-HHHHHh-cCCCcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhhh
Q 048389 377 GILFHESALKGAH-FIELCT-QRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYA 454 (566)
Q Consensus 377 G~l~~~~a~K~ar-~i~l~~-~~~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~a 454 (566)
|.++.+.+..+.. ++.+.. ...-||.+.+|+||- ..-.+-.+.+++...+.|+.|++.|.+++.|++-
T Consensus 37 ~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG----------~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslI 106 (200)
T CHL00028 37 QEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGG----------SVISGLAIYDTMQFVKPDVHTICLGLAASMASFI 106 (200)
T ss_pred CeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCc----------chhhHHHHHHHHHhcCCCEEEEEEEehHHHHHHH
Confidence 6677777666654 455443 346899999999995 3445567888899999999999999999988765
Q ss_pred hccCCCCCCEEEEecCceeeccCHHHH------HHHHhhh-hh---------hhhhhcCCCCchHHHHHHHHHHHHHHHh
Q 048389 455 MCGRAYSPNFMFLWPNARISVMGGAQA------AGVLSQV-EK---------DKKKKQGIEWTKQEEEMFKAKVVEAYEK 518 (566)
Q Consensus 455 m~~~~~~~d~~~A~p~A~i~vmg~e~a------a~i~~~~-~~---------~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 518 (566)
+++- ...-.+|.|++++.+-.|.+. ..+.... +. ...++-|++ .+ ++++.+.. +.
T Consensus 107 l~aG--~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~--~e---~i~~~~~r--~~ 177 (200)
T CHL00028 107 LAGG--EITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKP--LW---VISEDMER--DV 177 (200)
T ss_pred HhCC--CCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcC--HH---HHHHHhhc--Cc
Confidence 4331 112367888888776555431 1211100 00 011111211 11 12222211 12
Q ss_pred hCCHHHHHhCcccceecCchh
Q 048389 519 EGNAYYSTARLWDDGIIDPAD 539 (566)
Q Consensus 519 ~~~~~~aa~~g~iD~II~p~~ 539 (566)
..+|..+.+.|+||.|+++.+
T Consensus 178 ~lta~EA~eyGliD~I~~~~~ 198 (200)
T CHL00028 178 FMSATEAKAYGIVDLVAVNNE 198 (200)
T ss_pred cCCHHHHHHcCCCcEEeecCc
Confidence 368999999999999998754
No 76
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=97.23 E-value=0.012 Score=59.90 Aligned_cols=157 Identities=14% Similarity=0.116 Sum_probs=95.0
Q ss_pred CccCHHHHHHHHHHHHHHhcCCCcEEEEEecC-CCCCchHHH----------hcchHHHHHHHHHHHHcCCCCEEEEEcC
Q 048389 377 GILFHESALKGAHFIELCTQRKIPLVFLQNIT-GFMVGSRSE----------ANGIAKAGAKMVMAVSCAKVPKVTIIVG 445 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~~~iPlV~l~dt~-G~~~g~~~E----------~~g~~~~~a~~~~a~~~a~vP~isvi~g 445 (566)
.+++.+....+.++++.+....+-+|.|.-.+ .|..|.+-. .........+++.++....+|+|+.|-|
T Consensus 28 Nal~~~~~~~l~~~l~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav~G 107 (260)
T PRK07659 28 NALDEPMLKELLQALKEVAESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAIHG 107 (260)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEecC
Confidence 67899999999998887755667777776544 344443211 1112233455677888899999999999
Q ss_pred CCCchhhhhhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHHh
Q 048389 446 GSFGAGNYAMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEK 518 (566)
Q Consensus 446 ~~~Ggg~~am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 518 (566)
.++|||.--.+ ..|+++|.+++++++ ..+-+....+.+. +.... . .++.= --+
T Consensus 108 ~a~GgG~~lal----acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~-----------vg~~~---a-~~l~l-tg~ 167 (260)
T PRK07659 108 PAAGLGLSIAL----TADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKR-----------VGENK---A-KQIIW-EGK 167 (260)
T ss_pred ceecHHHHHHH----hCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHh-----------cCHHH---H-HHHHH-hCC
Confidence 99999864222 368999998887664 2222222222110 11100 0 11100 011
Q ss_pred hCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 519 EGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 519 ~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
..++..+.+.|++|.|+ +.++.+......+.+..+
T Consensus 168 ~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~ 202 (260)
T PRK07659 168 KLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQK 202 (260)
T ss_pred ccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhC
Confidence 24677788899999999 777666666555555544
No 77
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=97.22 E-value=0.016 Score=59.07 Aligned_cols=155 Identities=10% Similarity=0.017 Sum_probs=94.2
Q ss_pred CccCHHHHHHHHHHHHHHhcCCCcEEEEEecC-CCCCchH-HHh--------cchHHHHHHHHHHHHcCCCCEEEEEcCC
Q 048389 377 GILFHESALKGAHFIELCTQRKIPLVFLQNIT-GFMVGSR-SEA--------NGIAKAGAKMVMAVSCAKVPKVTIIVGG 446 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~~~iPlV~l~dt~-G~~~g~~-~E~--------~g~~~~~a~~~~a~~~a~vP~isvi~g~ 446 (566)
.+++.+....+.+.++.++ .++-+|.|.-.+ .|..|.+ .|. .........++.++.....|+|+.|-|.
T Consensus 24 Nal~~~~~~~l~~al~~~~-~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 102 (255)
T PRK08150 24 NALNDGLIAALRAAFARLP-EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALHGA 102 (255)
T ss_pred cCCCHHHHHHHHHHHHHhh-cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 6789999999999988877 667777776543 2444432 111 1112233456777888999999999999
Q ss_pred CCchhhh-hhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHHh
Q 048389 447 SFGAGNY-AMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEK 518 (566)
Q Consensus 447 ~~Ggg~~-am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 518 (566)
|+|||.. ++ .+|+++|.++++++. ..+-+....+.+. +... ...++. ..-+
T Consensus 103 a~GgG~~lal-----acD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-----------iG~~----~a~~l~-ltg~ 161 (255)
T PRK08150 103 VVGGGLELAS-----AAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRL-----------IGVA----RMTDMM-LTGR 161 (255)
T ss_pred EEcHHHHHHH-----hCCEEEEeCCCEEeccccccCCCCCccHHHHHHHH-----------hCHH----HHHHHH-HcCC
Confidence 9999864 33 358888887776665 2222222222110 0000 001111 0012
Q ss_pred hCCHHHHHhCcccceecCchhhHHHHHHHHHHhhC
Q 048389 519 EGNAYYSTARLWDDGIIDPADTRKIIGFCISAALN 553 (566)
Q Consensus 519 ~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~ 553 (566)
..++..+.+.|+||.|+++.++-+......+.+..
T Consensus 162 ~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~ 196 (255)
T PRK08150 162 VYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQ 196 (255)
T ss_pred cCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHh
Confidence 25777888999999999998776665555544443
No 78
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=97.18 E-value=0.0042 Score=62.62 Aligned_cols=156 Identities=16% Similarity=0.174 Sum_probs=91.7
Q ss_pred CCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhCCC--cEEEEEc-----CCCCCCCccccccCch-------hhHH
Q 048389 124 HGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKL--PCIYLVD-----SGGAYLPKQAEVFPDK-------ENFG 189 (566)
Q Consensus 124 ~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~l--PlV~l~d-----sgGarl~~~~~~~~~~-------~~~~ 189 (566)
+|.-..|.-|++.. -++...-.+.+..+++.+.+..- .+|.+.- |+|+.+.+-...-... ..+.
T Consensus 7 ~~~v~~i~Lnrp~~--Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~ 84 (239)
T PLN02267 7 RGNLFILTLTGDGE--HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLR 84 (239)
T ss_pred cCCEEEEEeCCCCc--CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHHHHH
Confidence 34333444455533 35888889999999988876543 3454443 3345443210000000 0112
Q ss_pred HHHHHHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEE-------eccHHH----H-----------Hh-
Q 048389 190 RIFYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIF-------LAGPPL----V-----------KA- 246 (566)
Q Consensus 190 ~i~~~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~-------~~GP~v----v-----------~~- 246 (566)
+++. .+.....|+|++|-|.|+|||..++..||++|+.++.++++ +..|.. + +.
T Consensus 85 ~~~~---~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~~ll 161 (239)
T PLN02267 85 PLVA---DLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRDVL 161 (239)
T ss_pred HHHH---HHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHHHHH
Confidence 2232 24445789999999999999999888899999875555443 221221 1 11
Q ss_pred hhcccccccCCCcccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 247 ATGEEISAEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 247 ~~ge~v~~e~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
.+|+.+++ .+.+ ..|++|.+++++++..+.++++...+
T Consensus 162 ltG~~~~a-----~eA~--~~Glv~~vv~~~~~l~~~a~~~A~~i 199 (239)
T PLN02267 162 LRAAKLTA-----EEAV--EMGIVDSAHDSAEETVEAAVRLGEEL 199 (239)
T ss_pred HcCCcCCH-----HHHH--HCCCcceecCCHHHHHHHHHHHHHHH
Confidence 13444443 3344 47999999986666777777777655
No 79
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=97.18 E-value=0.015 Score=59.59 Aligned_cols=158 Identities=11% Similarity=0.038 Sum_probs=95.6
Q ss_pred CccCHHHHHHHHHHHHHHhc-CCCcEEEEEecCC--CCCchHHHh-----------cchHHHHHHHHHHHHcCCCCEEEE
Q 048389 377 GILFHESALKGAHFIELCTQ-RKIPLVFLQNITG--FMVGSRSEA-----------NGIAKAGAKMVMAVSCAKVPKVTI 442 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~-~~iPlV~l~dt~G--~~~g~~~E~-----------~g~~~~~a~~~~a~~~a~vP~isv 442 (566)
.+++.+....+.++++.+++ ..+=+|.|.-.++ |..|.+-.. .........++..+.....|+|+.
T Consensus 33 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaa 112 (269)
T PRK06127 33 NAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIAC 112 (269)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 78899999999998887764 4555677765542 544433111 111222345667788999999999
Q ss_pred EcCCCCchhhhhhccCCCCCCEEEEecCceeecc-------CHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHH
Q 048389 443 IVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVM-------GGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEA 515 (566)
Q Consensus 443 i~g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~vm-------g~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 515 (566)
|-|.++|||..-.+ ..|+++|.+++++++- .+-+....+.+. +... ...++.-
T Consensus 113 v~G~a~GgG~~Lal----acD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-----------vG~~----~a~~l~l- 172 (269)
T PRK06127 113 IRGYCIGGGMGIAL----ACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDL-----------VGPS----AAKDLFY- 172 (269)
T ss_pred ECCEEecHHHHHHH----hCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHH-----------hCHH----HHHHHHH-
Confidence 99999999864221 3689999988777652 121211112110 0000 0011100
Q ss_pred HHhhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 516 YEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 516 ~~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
.-+..++..+.+.|+||+|+++.++.+...+..+.+...
T Consensus 173 tg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~ 211 (269)
T PRK06127 173 TARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGN 211 (269)
T ss_pred cCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhC
Confidence 011256777888999999999988877766666555543
No 80
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=97.18 E-value=0.0043 Score=62.67 Aligned_cols=151 Identities=16% Similarity=0.176 Sum_probs=88.6
Q ss_pred EEEecCccccccCChHHHHHHHHHHHHHHhCCCcEEEEEc-----CCCCCCCccccccCc-hhhHHHHHHHHHHHcCCCc
Q 048389 130 FVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVD-----SGGAYLPKQAEVFPD-KENFGRIFYNQAIMSAEGI 203 (566)
Q Consensus 130 v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~lPlV~l~d-----sgGarl~~~~~~~~~-~~~~~~i~~~~a~ls~~~V 203 (566)
|.-|.+. +.-+++......+.++++.+.+..+-+|.|.- |+|..+.+... ... ...+.+++.. +.....
T Consensus 13 itlnrp~-~~Nal~~~~~~~l~~al~~~~~~~vr~vvl~g~g~~F~aG~Dl~~~~~-~~~~~~~~~~~~~~---l~~~~k 87 (243)
T PRK07854 13 IELQRPE-RRNALNAELCEELREAVRKAVDESARAIVLTGQGTVFCAGADLSGDVY-ADDFPDALIEMLHA---IDAAPV 87 (243)
T ss_pred EEeCCCc-cccCCCHHHHHHHHHHHHHHhcCCceEEEEECCCCceecccCCccchh-HHHHHHHHHHHHHH---HHhCCC
Confidence 3444444 33488899999999999888776666676654 33444432100 000 0111223333 334468
Q ss_pred CEEEEEeccccccccccccCCCeeEEEecceeEEe-------c----cHHHHHhhhccc------ccccCCCcccccccc
Q 048389 204 PQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------A----GPPLVKAATGEE------ISAEDLGGAAVHCKT 266 (566)
Q Consensus 204 P~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~----GP~vv~~~~ge~------v~~e~lGga~~h~~~ 266 (566)
|+|+.|-|.|+|||..+...||++|+. +++++.+ . +...+....|.. ++.+.+.+.+-+ .
T Consensus 88 P~Iaav~G~a~GgG~~lal~cD~~ia~-~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~--~ 164 (243)
T PRK07854 88 PVIAAINGPAIGAGLQLAMACDLRVVA-PEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQAL--A 164 (243)
T ss_pred CEEEEecCcccccHHHHHHhCCEEEEc-CCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHH--H
Confidence 999999999999999998899998875 4666543 1 111122112211 122334444455 4
Q ss_pred cCcceEEEcchhHHHHHHHHHHH
Q 048389 267 SGVSDYFAQDELHGLSLGRNIIK 289 (566)
Q Consensus 267 sG~~d~v~~de~~a~~~~r~~ls 289 (566)
.|++|.+++.+ ++.+.++++.+
T Consensus 165 ~Glv~~v~~~~-~a~~~a~~l~~ 186 (243)
T PRK07854 165 TGMANRIGTLA-DAQAWAAEIAG 186 (243)
T ss_pred CCCcccccCHH-HHHHHHHHHHh
Confidence 89999997543 66666666654
No 81
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=97.17 E-value=0.015 Score=56.96 Aligned_cols=142 Identities=13% Similarity=0.050 Sum_probs=88.5
Q ss_pred CccCHHHHHHHHHHHHHHhc--CCCcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhhh
Q 048389 377 GILFHESALKGAHFIELCTQ--RKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYA 454 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~--~~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~a 454 (566)
|.++...+..+..-+...+. ..-||.+.+|+||- ..-.+-.+.+++...+.|+.+++.|-+.+.|++-
T Consensus 32 ~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG----------~v~~g~aIyd~m~~~~~~V~t~~~G~AaS~AslI 101 (196)
T PRK12551 32 EPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGG----------SVYDGLGIFDTMQHVKPDVHTVCVGLAASMGAFL 101 (196)
T ss_pred CeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCc----------chhhHHHHHHHHHhcCCCEEEEEEEEehhHHHHH
Confidence 56778887777765554443 35899999999994 3345567788899999999999999999987764
Q ss_pred -hccCCCCCCEEEEecCceeeccCHHHH------------HHHHhh---hhhhhhhhcCCCCchHHHHHHHHHHHHHHHh
Q 048389 455 -MCGRAYSPNFMFLWPNARISVMGGAQA------------AGVLSQ---VEKDKKKKQGIEWTKQEEEMFKAKVVEAYEK 518 (566)
Q Consensus 455 -m~~~~~~~d~~~A~p~A~i~vmg~e~a------------a~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 518 (566)
+++. ....+|.|++++..-.|-+. ..+... ......++-|++ . +++.+.+.. +.
T Consensus 102 l~aG~---~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~--~---~~i~~~~~r--d~ 171 (196)
T PRK12551 102 LCAGA---KGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQP--L---ERIQEDTDR--DF 171 (196)
T ss_pred HhCCC---CCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcC--H---HHHHHHhhc--Cc
Confidence 4441 23357788887776555321 111110 000012222222 1 122222221 12
Q ss_pred hCCHHHHHhCcccceecCch
Q 048389 519 EGNAYYSTARLWDDGIIDPA 538 (566)
Q Consensus 519 ~~~~~~aa~~g~iD~II~p~ 538 (566)
..+|..+.+.|++|.|++.+
T Consensus 172 ~msa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 172 FMSPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred CCCHHHHHHcCCCcEEeccC
Confidence 37899999999999999874
No 82
>PRK08139 enoyl-CoA hydratase; Validated
Probab=97.16 E-value=0.02 Score=58.60 Aligned_cols=156 Identities=10% Similarity=0.073 Sum_probs=93.3
Q ss_pred CccCHHHHHHHHHHHHHHhc-CCCcEEEEEecC-CCCCchHHH----------hcchHHHHHHHHHHHHcCCCCEEEEEc
Q 048389 377 GILFHESALKGAHFIELCTQ-RKIPLVFLQNIT-GFMVGSRSE----------ANGIAKAGAKMVMAVSCAKVPKVTIIV 444 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~-~~iPlV~l~dt~-G~~~g~~~E----------~~g~~~~~a~~~~a~~~a~vP~isvi~ 444 (566)
.+++.+....+.+.++.++. ..+-+|.|.-.+ .|..|.+-. .....+...+++..+.....|+|+.|-
T Consensus 33 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 112 (266)
T PRK08139 33 NALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIARVH 112 (266)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 67889999988888886653 445666665433 233333211 011222334677788899999999999
Q ss_pred CCCCchhhh-hhccCCCCCCEEEEecCceee-------ccCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHH
Q 048389 445 GGSFGAGNY-AMCGRAYSPNFMFLWPNARIS-------VMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAY 516 (566)
Q Consensus 445 g~~~Ggg~~-am~~~~~~~d~~~A~p~A~i~-------vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 516 (566)
|.|+|||.- ++ ..|+++|.++++++ +.++-+...+...+ ... ...++. ..
T Consensus 113 G~a~GgG~~lal-----acD~ria~~~a~f~~pe~~~Gl~p~~~~~~l~r~v------------G~~----~A~~l~-lt 170 (266)
T PRK08139 113 GIATAAGCQLVA-----SCDLAVAADTARFAVPGVNIGLFCSTPMVALSRNV------------PRK----QAMEML-LT 170 (266)
T ss_pred ceeeHHHHHHHH-----hCCEEEEeCCCEEeCcccCcCCCCCccHHHHHHHh------------CHH----HHHHHH-Hc
Confidence 999999875 33 24777776665554 43322222111110 000 001110 00
Q ss_pred HhhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 517 EKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 517 ~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
-+..++..+.+.|+||+|+++.++.+...+..+.+...
T Consensus 171 g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~ 208 (266)
T PRK08139 171 GEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAK 208 (266)
T ss_pred CCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhC
Confidence 12247778889999999999988887776666665544
No 83
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=97.16 E-value=0.0018 Score=65.25 Aligned_cols=157 Identities=21% Similarity=0.266 Sum_probs=95.9
Q ss_pred ECCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhCC-CcEEEEEcCCCCCCCccc-cccCc---------hhhHHHH
Q 048389 123 VHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCK-LPCIYLVDSGGAYLPKQA-EVFPD---------KENFGRI 191 (566)
Q Consensus 123 I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~-lPlV~l~dsgGarl~~~~-~~~~~---------~~~~~~i 191 (566)
+++.-..+.-|.+. ..-+++....+.+..+++.+.+.. +-+|.+.-+++.+-...+ ..+.. ...+..+
T Consensus 4 ~~~~v~~i~ln~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 82 (245)
T PF00378_consen 4 IEDGVATITLNRPE-KRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQEL 82 (245)
T ss_dssp EETTEEEEEEECGG-GTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCEEEEEECCCC-CCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhccccccccccchhhccc
Confidence 33444445555554 456899999999999999888765 346666554444321110 00000 0111222
Q ss_pred HHHHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEec--------------------cHHHHH-h-hhc
Q 048389 192 FYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLA--------------------GPPLVK-A-ATG 249 (566)
Q Consensus 192 ~~~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~--------------------GP~vv~-~-~~g 249 (566)
+. .+.....|+|++|-|.|+|||...+..||++|+.+ ++.+++. |+...+ . .+|
T Consensus 83 ~~---~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~-~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~g 158 (245)
T PF00378_consen 83 LS---RLANFPKPTIAAVNGHAVGGGFELALACDFRIAAE-DAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLTG 158 (245)
T ss_dssp HH---HHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEET-TTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHHT
T ss_pred cc---cchhhhhheeecccccccccccccccccceEEeec-ccceeeeecccCcccccccccccceeeeccccccccccc
Confidence 32 33445789999999999999999988999998764 6776541 111111 1 244
Q ss_pred ccccccCCCcccccccccCcceEEEcchhHHHHHHHHHHHhcc
Q 048389 250 EEISAEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNLH 292 (566)
Q Consensus 250 e~v~~e~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~Lp 292 (566)
+.+++++ .+ ..|++|.++++++ ..+.++++..-+-
T Consensus 159 ~~~~a~e-----A~--~~Glv~~v~~~~~-l~~~a~~~a~~l~ 193 (245)
T PF00378_consen 159 EPISAEE-----AL--ELGLVDEVVPDEE-LDEEALELAKRLA 193 (245)
T ss_dssp CEEEHHH-----HH--HTTSSSEEESGGG-HHHHHHHHHHHHH
T ss_pred ccchhHH-----HH--hhcceeEEcCchh-hhHHHHHHHHHHh
Confidence 5555433 44 4899999998776 6667766666553
No 84
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=97.15 E-value=0.027 Score=54.20 Aligned_cols=150 Identities=12% Similarity=0.084 Sum_probs=94.1
Q ss_pred CccCHHHHHHHHHHHHHHhc-CCCcEEEEEecCC-CCCchHHH-----------hcchHHHHHHHHHHHHcCCCCEEEEE
Q 048389 377 GILFHESALKGAHFIELCTQ-RKIPLVFLQNITG-FMVGSRSE-----------ANGIAKAGAKMVMAVSCAKVPKVTII 443 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~-~~iPlV~l~dt~G-~~~g~~~E-----------~~g~~~~~a~~~~a~~~a~vP~isvi 443 (566)
.+++.+..+.+.++++.++. ..+-+|.|.-.++ |..|.+-. .....+...+++..+....+|+|++|
T Consensus 21 N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v 100 (195)
T cd06558 21 NALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAV 100 (195)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 68899999999998887764 5667777766443 24443211 12234445677788889999999999
Q ss_pred cCCCCchhhhhhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHH
Q 048389 444 VGGSFGAGNYAMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAY 516 (566)
Q Consensus 444 ~g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 516 (566)
-|.++|+|....+ .+|++++-+++.++. ..+.+....+.+. .... ...++.-.
T Consensus 101 ~G~a~g~G~~la~----~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~-----------~g~~----~a~~~~l~- 160 (195)
T cd06558 101 NGAALGGGLELAL----ACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRL-----------VGPA----RARELLLT- 160 (195)
T ss_pred CCeeecHHHHHHH----hCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHH-----------hCHH----HHHHHHHc-
Confidence 9999999865332 368888887766664 3333433333211 0000 00111000
Q ss_pred HhhCCHHHHHhCcccceecCchhhHHHHHH
Q 048389 517 EKEGNAYYSTARLWDDGIIDPADTRKIIGF 546 (566)
Q Consensus 517 ~~~~~~~~aa~~g~iD~II~p~~tR~~L~~ 546 (566)
-+..++..+.+.|++|++++..++.+....
T Consensus 161 g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~ 190 (195)
T cd06558 161 GRRISAEEALELGLVDEVVPDEELLAAALE 190 (195)
T ss_pred CCccCHHHHHHcCCCCeecChhHHHHHHHH
Confidence 112467788999999999998766655443
No 85
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=97.14 E-value=0.019 Score=58.84 Aligned_cols=157 Identities=15% Similarity=0.047 Sum_probs=93.4
Q ss_pred CccCHHHHHHHHHHHHHHhc-CCCcEEEEEecC-CCCCchHHH-----------hcchHHHHHHHHHHHHcCCCCEEEEE
Q 048389 377 GILFHESALKGAHFIELCTQ-RKIPLVFLQNIT-GFMVGSRSE-----------ANGIAKAGAKMVMAVSCAKVPKVTII 443 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~-~~iPlV~l~dt~-G~~~g~~~E-----------~~g~~~~~a~~~~a~~~a~vP~isvi 443 (566)
.+++.+....+.+.++-++. ..+-+|+|.-.+ .|..|.+-. ..........++..+.....|+|+.|
T Consensus 34 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 113 (268)
T PRK07327 34 NAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSAI 113 (268)
T ss_pred CCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 67888888888888876653 456667775433 233333211 11122233456777888999999999
Q ss_pred cCCCCchhhh-hhccCCCCCCEEEEecCceee-------ccCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHH
Q 048389 444 VGGSFGAGNY-AMCGRAYSPNFMFLWPNARIS-------VMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEA 515 (566)
Q Consensus 444 ~g~~~Ggg~~-am~~~~~~~d~~~A~p~A~i~-------vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 515 (566)
-|.|+|||.. ++ .+|+++|.++++++ +.++.+....+.+. +... ...++.-
T Consensus 114 ~G~a~GgG~~lal-----acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-----------vG~~----~a~~l~l- 172 (268)
T PRK07327 114 HGPAVGAGLVAAL-----LADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLL-----------CGMA----KAKYYLL- 172 (268)
T ss_pred cCeeeehhhHHHH-----hCCEEEecCCCEEeCcccccCCCCCcchhhHHHHH-----------hCHH----HHHHHHH-
Confidence 9999998864 33 35888877766665 33333322222110 0000 0001100
Q ss_pred HHhhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 516 YEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 516 ~~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
.-+..++..+.+.|+||+|+++.++.+......+.+...
T Consensus 173 tg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 211 (268)
T PRK07327 173 LCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAG 211 (268)
T ss_pred cCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcC
Confidence 011247777888999999999888777766666555544
No 86
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=97.14 E-value=0.016 Score=59.10 Aligned_cols=158 Identities=11% Similarity=0.044 Sum_probs=97.7
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecCC--CCCchHH-H--------hcchHHHHHHHHHHHHcCCCCEEEEEc
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNITG--FMVGSRS-E--------ANGIAKAGAKMVMAVSCAKVPKVTIIV 444 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~G--~~~g~~~-E--------~~g~~~~~a~~~~a~~~a~vP~isvi~ 444 (566)
.+++.+....+.+.++.++ ...+-+|.|.-.++ |..|.+- | ..........++..+.....|+|+.|-
T Consensus 26 Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 105 (260)
T PRK07657 26 NALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAIN 105 (260)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 6789999999988887654 45667788876653 5555431 1 111222345667888889999999999
Q ss_pred CCCCchhhhhhccCCCCCCEEEEecCceee-------ccCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHH
Q 048389 445 GGSFGAGNYAMCGRAYSPNFMFLWPNARIS-------VMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYE 517 (566)
Q Consensus 445 g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~-------vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 517 (566)
|.++|||..-.+ .+|+++|.++++++ +.++-+....+.+. +.... . .++. ..-
T Consensus 106 G~a~GgG~~lal----~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~-----------vG~~~---a-~~l~-l~g 165 (260)
T PRK07657 106 GIALGGGLELAL----ACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRL-----------IGVGR---A-KELI-YTG 165 (260)
T ss_pred CEeechHHHHHH----hCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHH-----------hCHHH---H-HHHH-HhC
Confidence 999999875322 35888888766554 33333323222210 00000 0 1110 001
Q ss_pred hhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 518 KEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 518 ~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
+..++..+.+.|++|.|+++.++.+......+.+...
T Consensus 166 ~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~ 202 (260)
T PRK07657 166 RRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASN 202 (260)
T ss_pred CCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhC
Confidence 2257888889999999999988777766666555543
No 87
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=97.13 E-value=0.02 Score=58.29 Aligned_cols=157 Identities=11% Similarity=0.047 Sum_probs=93.2
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecCC-CCCchHHHh-----------cchHHHHHHHHHHHHcCCCCEEEEE
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNITG-FMVGSRSEA-----------NGIAKAGAKMVMAVSCAKVPKVTII 443 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~G-~~~g~~~E~-----------~g~~~~~a~~~~a~~~a~vP~isvi 443 (566)
.+++++....+.+.++.++ ...+-+|.|.-.++ |..|.+-.. .........++..+.....|+|+.|
T Consensus 25 Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 104 (257)
T PRK06495 25 NALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAAV 104 (257)
T ss_pred ccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 6788999999999888765 44566777765332 333322110 0111223456777888999999999
Q ss_pred cCCCCchhhh-hhccCCCCCCEEEEecCceeeccCHH----HHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHHh
Q 048389 444 VGGSFGAGNY-AMCGRAYSPNFMFLWPNARISVMGGA----QAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEK 518 (566)
Q Consensus 444 ~g~~~Ggg~~-am~~~~~~~d~~~A~p~A~i~vmg~e----~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 518 (566)
-|.|+|||.- ++ ..|+++|-+++++++.... +....+.+. +.... .++-+.. -+
T Consensus 105 ~G~a~GgG~~lal-----acD~~ia~~~a~f~~pe~~~Gl~~~~~~l~~~-----------~g~~~---a~~lll~--g~ 163 (257)
T PRK06495 105 NGPALGAGLGLVA-----SCDIIVASENAVFGLPEIDVGLAGGGKHAMRL-----------FGHSL---TRRMMLT--GY 163 (257)
T ss_pred CCeeehhHHHHHH-----hCCEEEecCCCEeeChhhccCccccHHHHHHH-----------hCHHH---HHHHHHc--CC
Confidence 9999999864 33 3588887766665542211 111111110 01100 0011110 12
Q ss_pred hCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 519 EGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 519 ~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
..++..+.+.|+||+|+++.++.+......+.+...
T Consensus 164 ~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~ 199 (257)
T PRK06495 164 RVPAAELYRRGVIEACLPPEELMPEAMEIAREIASK 199 (257)
T ss_pred eeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhC
Confidence 257778889999999999988777766666666544
No 88
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.12 E-value=0.014 Score=58.26 Aligned_cols=143 Identities=10% Similarity=-0.062 Sum_probs=87.0
Q ss_pred CccCHHHHHHHHHHHHHHhc--CCCcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhhh
Q 048389 377 GILFHESALKGAHFIELCTQ--RKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYA 454 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~--~~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~a 454 (566)
|.++...+..+..-+.+-+. .+-||.+.+|+||- ..-.+-.+.+++...+.|+.+++.|.+.+.|++-
T Consensus 61 ~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGG----------sv~aGlaIyd~m~~~~~~V~tv~~G~AAS~AslI 130 (221)
T PRK14514 61 TQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGG----------SVYAGLGIYDTMQFISSDVATICTGMAASMASVL 130 (221)
T ss_pred CEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCc----------chhhHHHHHHHHHhcCCCEEEEEEEEehhHHHHH
Confidence 56677777666653333332 35899999999995 3344556788899999999999999999988775
Q ss_pred hccCCCCCCEEEEecCceeeccCHHHH------------HHHHhhh---hhhhhhhcCCCCchHHHHHHHHHHHHHHHhh
Q 048389 455 MCGRAYSPNFMFLWPNARISVMGGAQA------------AGVLSQV---EKDKKKKQGIEWTKQEEEMFKAKVVEAYEKE 519 (566)
Q Consensus 455 m~~~~~~~d~~~A~p~A~i~vmg~e~a------------a~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 519 (566)
+++- ...-.+|.|++++.+-.|-+. ..+.... ....+++-|++ . +++.+.+.. +..
T Consensus 131 l~aG--~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~--~---e~I~~~~~r--d~w 201 (221)
T PRK14514 131 LVAG--TKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTP--F---DKVWADSDR--DYW 201 (221)
T ss_pred HhcC--CCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcC--H---HHHHHHhhc--Ccc
Confidence 4431 122367888888876655421 1111100 00011222221 1 122222221 113
Q ss_pred CCHHHHHhCcccceecCch
Q 048389 520 GNAYYSTARLWDDGIIDPA 538 (566)
Q Consensus 520 ~~~~~aa~~g~iD~II~p~ 538 (566)
.+|..+.+.|++|.|+..+
T Consensus 202 mtA~EA~eyGliD~Vi~~~ 220 (221)
T PRK14514 202 MTAQEAKEYGMIDEVLIKK 220 (221)
T ss_pred CCHHHHHHcCCccEEeecC
Confidence 6899999999999999853
No 89
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=97.07 E-value=0.021 Score=58.81 Aligned_cols=158 Identities=9% Similarity=0.060 Sum_probs=97.0
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecCC-CCCchH-HHh------cc------hHHHHHHHHHHHHcCCCCEEE
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNITG-FMVGSR-SEA------NG------IAKAGAKMVMAVSCAKVPKVT 441 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~G-~~~g~~-~E~------~g------~~~~~a~~~~a~~~a~vP~is 441 (566)
.+++.+....+.++++.++ ..++-+|.|.-.+. |..|.+ .+. .+ ..+....++..+....+|+|+
T Consensus 30 Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 109 (275)
T PRK09120 30 NAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTIA 109 (275)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 6788998888888888765 45666777765442 444433 111 00 111223456778889999999
Q ss_pred EEcCCCCchhhhhhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHH
Q 048389 442 IIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVE 514 (566)
Q Consensus 442 vi~g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 514 (566)
.|-|.|+|||..-.+ .+|+++|.++++++. .++-+....+.+. +... ...++.
T Consensus 110 av~G~a~GgG~~lal----~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-----------iG~~----~a~~ll- 169 (275)
T PRK09120 110 MVNGWCFGGGFSPLV----ACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADT-----------VGHR----DALYYI- 169 (275)
T ss_pred EEcCEEechhHHHHH----hCCEEEEeCCcEecCCccccCCCCCcchHHHHHHH-----------cCHH----HHHHHH-
Confidence 999999999875322 358888776665554 4333333333210 0010 001111
Q ss_pred HHHhhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 515 AYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 515 ~~~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
..-+..++..+.+.|+||.|+++.++.+......+.+...
T Consensus 170 ltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 209 (275)
T PRK09120 170 MTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEK 209 (275)
T ss_pred hcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhC
Confidence 0012257778889999999999999988877777766554
No 90
>PLN02600 enoyl-CoA hydratase
Probab=97.06 E-value=0.028 Score=57.00 Aligned_cols=157 Identities=11% Similarity=0.102 Sum_probs=93.8
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC--CCCCchHHH---------hcchHHHHHHHHHHHHcCCCCEEEEEc
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT--GFMVGSRSE---------ANGIAKAGAKMVMAVSCAKVPKVTIIV 444 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~--G~~~g~~~E---------~~g~~~~~a~~~~a~~~a~vP~isvi~ 444 (566)
.+++.+....+.+.++.++ ...+-+|.|.-.. -|..|.+-. ..........++..+.....|+|+.|-
T Consensus 17 Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 96 (251)
T PLN02600 17 NAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVE 96 (251)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 6788899998888887665 4566777776432 244443211 111222234456778889999999999
Q ss_pred CCCCchhhh-hhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHH
Q 048389 445 GGSFGAGNY-AMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAY 516 (566)
Q Consensus 445 g~~~Ggg~~-am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 516 (566)
|.++|||.- ++ .+|+++|.+++++++ ...-+....+.+. +.... . ++-+..
T Consensus 97 G~a~GgG~~lal-----a~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-----------~G~~~--a-~~l~lt-- 155 (251)
T PLN02600 97 GAALGGGLELAL-----SCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRL-----------VGRSR--A-KELIFT-- 155 (251)
T ss_pred CeecchhHHHHH-----hCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHH-----------hCHHH--H-HHHHHh--
Confidence 999999864 33 358888887777665 2222222222110 00000 0 011100
Q ss_pred HhhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 517 EKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 517 ~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
-+..++..+.+.|+||+|+++.++.+......+.+...
T Consensus 156 g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~ 193 (251)
T PLN02600 156 GRRIGAREAASMGLVNYCVPAGEAYEKALELAQEINQK 193 (251)
T ss_pred CCccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhC
Confidence 12357778889999999999988766655555544443
No 91
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=97.06 E-value=0.028 Score=57.29 Aligned_cols=157 Identities=9% Similarity=0.046 Sum_probs=94.8
Q ss_pred CccCHHHHHHHHHHHHHHhc-CCCcEEEEEecC-CCCCchHHH-hc--------ch---HHHHHHHHHHHHcCCCCEEEE
Q 048389 377 GILFHESALKGAHFIELCTQ-RKIPLVFLQNIT-GFMVGSRSE-AN--------GI---AKAGAKMVMAVSCAKVPKVTI 442 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~-~~iPlV~l~dt~-G~~~g~~~E-~~--------g~---~~~~a~~~~a~~~a~vP~isv 442 (566)
.+++.+..+.+.+.++.++. ..+-+|.|.-.+ .|..|.+-. .. .. .+....++.++.....|+|+.
T Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 105 (262)
T PRK05995 26 NAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIAR 105 (262)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEEE
Confidence 67899999999998887654 566777776544 244443211 00 00 123355677888999999999
Q ss_pred EcCCCCchhhhhhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHH
Q 048389 443 IVGGSFGAGNYAMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEA 515 (566)
Q Consensus 443 i~g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 515 (566)
|-|.|+|||.--.+ .+|+++|.+++++++ .+.-+... +.+. +... ...++. .
T Consensus 106 v~G~a~GgG~~lal----acD~ria~~~a~f~~pe~~~Gl~p~~g~~~-l~~~-----------vg~~----~a~~l~-l 164 (262)
T PRK05995 106 VHGDAYAGGMGLVA----ACDIAVAADHAVFCLSEVRLGLIPATISPY-VIRA-----------MGER----AARRYF-L 164 (262)
T ss_pred ECCEEEhhHHHHHH----hCCEEEeeCCCEEeCcccccccCccchHHH-HHHH-----------hCHH----HHHHHH-H
Confidence 99999998864222 358887776665554 32222222 2110 1110 001110 0
Q ss_pred HHhhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 516 YEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 516 ~~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
.-+..++..+.+.|+||+|+++.++.+...+..+.+...
T Consensus 165 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 203 (262)
T PRK05995 165 TAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVAN 203 (262)
T ss_pred cCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhC
Confidence 011247778889999999999888887776666555543
No 92
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=97.06 E-value=0.028 Score=57.23 Aligned_cols=158 Identities=12% Similarity=0.082 Sum_probs=94.3
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC--CCCCchHHH---------hcchHHHHHHHHHHHHcCCCCEEEEEc
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT--GFMVGSRSE---------ANGIAKAGAKMVMAVSCAKVPKVTIIV 444 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~--G~~~g~~~E---------~~g~~~~~a~~~~a~~~a~vP~isvi~ 444 (566)
.+++.+....+.++++.+. ...+-+|.|.-.+ .|..|.+-. .........+++..+....+|+|+.|-
T Consensus 26 Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 105 (260)
T PRK05809 26 NALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAIN 105 (260)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 6788999888888888665 4556666665433 244443211 111122334567788899999999999
Q ss_pred CCCCchhhhhhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHH
Q 048389 445 GGSFGAGNYAMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYE 517 (566)
Q Consensus 445 g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 517 (566)
|.|+|||..-.+ ..|+++|.+++++++ .+.-+....+.+. +... ...++. ..-
T Consensus 106 G~a~GgG~~lal----~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-----------vG~~----~a~~l~-l~g 165 (260)
T PRK05809 106 GFALGGGCELSM----ACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARI-----------VGPG----KAKELI-YTG 165 (260)
T ss_pred CeeecHHHHHHH----hCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHH-----------hCHH----HHHHHH-HhC
Confidence 999999864322 358888887776654 2222222222110 0000 001110 001
Q ss_pred hhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 518 KEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 518 ~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
+..++..+.+.|++|+|+++.++.+......+.+...
T Consensus 166 ~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 202 (260)
T PRK05809 166 DMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAAN 202 (260)
T ss_pred CCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhC
Confidence 2257778889999999999888776666666555543
No 93
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=97.05 E-value=0.035 Score=56.40 Aligned_cols=156 Identities=10% Similarity=0.050 Sum_probs=97.0
Q ss_pred CccCHHHHHHHHHHHHHHhc-CCCcEEEEEecCC-CCCchHHH-hc------c------hHHHHHHHHHHHHcCCCCEEE
Q 048389 377 GILFHESALKGAHFIELCTQ-RKIPLVFLQNITG-FMVGSRSE-AN------G------IAKAGAKMVMAVSCAKVPKVT 441 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~-~~iPlV~l~dt~G-~~~g~~~E-~~------g------~~~~~a~~~~a~~~a~vP~is 441 (566)
.+++.+....+.++++.++. ..+-+|.|.-.+. |..|.+-. .. . ..+...+++.++.....|+|+
T Consensus 24 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 103 (255)
T PRK07260 24 NGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIM 103 (255)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 67899999999998886654 5556777765442 34443311 10 1 112234566788889999999
Q ss_pred EEcCCCCchhhh-hhccCCCCCCEEEEecCceeeccC------HH-HHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHH
Q 048389 442 IIVGGSFGAGNY-AMCGRAYSPNFMFLWPNARISVMG------GA-QAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVV 513 (566)
Q Consensus 442 vi~g~~~Ggg~~-am~~~~~~~d~~~A~p~A~i~vmg------~e-~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 513 (566)
.|-|.+.|||.. ++ ..|+++|.+++.++... |. +....+.+. +... ...++.
T Consensus 104 av~G~a~GgG~~lal-----a~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-----------vg~~----~a~~l~ 163 (255)
T PRK07260 104 CVDGAVAGAAANMAV-----AADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRA-----------IGLN----RATHLA 163 (255)
T ss_pred EecCeeehhhHHHHH-----hCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHh-----------hCHH----HHHHHH
Confidence 999999998764 44 36999999988877521 11 111111110 0110 001111
Q ss_pred HHHH-hhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 514 EAYE-KEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 514 ~~~~-~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
+. +..++..+.+.|+||+|+++.++.+......+.+...
T Consensus 164 --l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 203 (255)
T PRK07260 164 --MTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRG 203 (255)
T ss_pred --HhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcC
Confidence 11 2357888899999999999988887777666666544
No 94
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=97.05 E-value=0.032 Score=56.96 Aligned_cols=156 Identities=7% Similarity=0.013 Sum_probs=93.3
Q ss_pred CccCHHHHHHHHHHHHHHhcCCCcEEEEEecC---CCCCchHHHh--------cchHHHHHHHHHHHHcCCCCEEEEEcC
Q 048389 377 GILFHESALKGAHFIELCTQRKIPLVFLQNIT---GFMVGSRSEA--------NGIAKAGAKMVMAVSCAKVPKVTIIVG 445 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~~~iPlV~l~dt~---G~~~g~~~E~--------~g~~~~~a~~~~a~~~a~vP~isvi~g 445 (566)
.+++.+....+..+++.++...+-+|.|.-.. -|..|.+-.. .........++..+.....|+|+.|-|
T Consensus 26 Nal~~~~~~~l~~al~~~~~d~v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav~G 105 (261)
T PRK11423 26 NALSKVLIDDLMQALSDLNRPEIRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMVEG 105 (261)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHHHHHHhCCCCEEEEEec
Confidence 67899999988888887765556667776321 2433332111 111223345677788899999999999
Q ss_pred CCCchhh-hhhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHH
Q 048389 446 GSFGAGN-YAMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYE 517 (566)
Q Consensus 446 ~~~Ggg~-~am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 517 (566)
.|+|||. ++++ .|+++|-+++++++ ..+-+....+.+. +... ...++. +.
T Consensus 106 ~a~GgG~~lala-----cD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~-----------vg~~----~a~~l~--l~ 163 (261)
T PRK11423 106 SVWGGAFELIMS-----CDLIIAASTSTFAMTPANLGVPYNLSGILNFTND-----------AGFH----IVKEMF--FT 163 (261)
T ss_pred EEechHHHHHHh-----CCEEEecCCCEecCchhhcCCCCCccHHHHHHHH-----------hHHH----HHHHHH--Hc
Confidence 9999986 4443 58888877776654 2221222111110 0000 001110 11
Q ss_pred -hhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 518 -KEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 518 -~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
+..++..+.+.|+||.|+++.++.+......+.+..+
T Consensus 164 g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~ 201 (261)
T PRK11423 164 ASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEK 201 (261)
T ss_pred CCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhc
Confidence 1246777889999999999888776666555555443
No 95
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=97.05 E-value=0.011 Score=56.43 Aligned_cols=91 Identities=21% Similarity=0.178 Sum_probs=67.3
Q ss_pred eCCccCHHHHHHHHHHHHHHhcC--CCcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchhh
Q 048389 375 NNGILFHESALKGAHFIELCTQR--KIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGN 452 (566)
Q Consensus 375 n~G~l~~~~a~K~ar~i~l~~~~--~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~ 452 (566)
-+|.++...+..+...+...+.. .-||++.+|+||-. ...+-.+.+.+...+.|+.+++.|.++++|+
T Consensus 14 i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~----------v~~~~~i~~~l~~~~~~v~t~~~g~aaS~~~ 83 (171)
T cd07017 14 LGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGS----------VTAGLAIYDTMQYIKPPVSTICLGLAASMGA 83 (171)
T ss_pred EcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCCCC----------HHHHHHHHHHHHhcCCCEEEEEEeEehhHHH
Confidence 34777788777776666655543 37999999999963 3344456677777889999999999999987
Q ss_pred hhhccCCCCCC--EEEEecCceeeccCHH
Q 048389 453 YAMCGRAYSPN--FMFLWPNARISVMGGA 479 (566)
Q Consensus 453 ~am~~~~~~~d--~~~A~p~A~i~vmg~e 479 (566)
+-+++ +| -.++.|++.+.+-.|.
T Consensus 84 ~i~~~----g~~~~r~~~~~a~~~~h~~~ 108 (171)
T cd07017 84 LLLAA----GTKGKRYALPNSRIMIHQPL 108 (171)
T ss_pred HHHHc----CCCCCEEEccchHHHHcCCC
Confidence 75443 24 5899999988876654
No 96
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=97.02 E-value=0.032 Score=56.74 Aligned_cols=156 Identities=16% Similarity=0.130 Sum_probs=94.3
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC-CCCCchHH-Hh------cchHHHHHHHHHHHHcCCCCEEEEEcCCC
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT-GFMVGSRS-EA------NGIAKAGAKMVMAVSCAKVPKVTIIVGGS 447 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~-G~~~g~~~-E~------~g~~~~~a~~~~a~~~a~vP~isvi~g~~ 447 (566)
.+++.+....+.+.++.++ ...+-+|.|.-.+ .|..|.+- +. .........++..+....+|+|+.|-|.+
T Consensus 24 Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a 103 (255)
T PRK09674 24 NALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGYA 103 (255)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 7789999999999888765 4556677776543 24444321 11 01112234567778889999999999999
Q ss_pred Cchhhh-hhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHH-h
Q 048389 448 FGAGNY-AMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYE-K 518 (566)
Q Consensus 448 ~Ggg~~-am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~ 518 (566)
+|||.. ++ ..|+++|.++++++. .++-+....+.+. +... ...++. +. +
T Consensus 104 ~GgG~~lal-----acD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-----------ig~~----~a~~l~--l~g~ 161 (255)
T PRK09674 104 LGAGCELAL-----LCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRS-----------VGKS----LASQMV--LTGE 161 (255)
T ss_pred ehHHHHHHH-----hCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHH-----------hCHH----HHHHHH--HcCC
Confidence 999764 33 358888887766654 3332222222110 0110 001110 11 1
Q ss_pred hCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 519 EGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 519 ~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
..++..+.+.|+||.|+++.++-+......+.+...
T Consensus 162 ~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~ 197 (255)
T PRK09674 162 SITAQQAQQAGLVSEVFPPELTLERALQLASKIARH 197 (255)
T ss_pred ccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhC
Confidence 257788889999999999987766655555555544
No 97
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=96.96 E-value=0.04 Score=56.69 Aligned_cols=158 Identities=10% Similarity=0.063 Sum_probs=93.2
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC-CCCCchHHH-h-------------------cchHHHHHHHHHHHHc
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT-GFMVGSRSE-A-------------------NGIAKAGAKMVMAVSC 434 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~-G~~~g~~~E-~-------------------~g~~~~~a~~~~a~~~ 434 (566)
.+++.+....+.+.++.++ ...+-+|+|.-.+ .|..|-+-. . ........+++..+..
T Consensus 30 Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 109 (275)
T PLN02664 30 NALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIEQ 109 (275)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 6799999999999888765 4567777776543 233333211 0 0011223456677888
Q ss_pred CCCCEEEEEcCCCCchhhhhhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHH
Q 048389 435 AKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEM 507 (566)
Q Consensus 435 a~vP~isvi~g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~ 507 (566)
...|+|+.|-|.|+|||..-.+ .+|+++|.++++++. ..+-+....+.+. +.... +
T Consensus 110 ~~kPvIaav~G~a~GgG~~lal----~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-----------vG~~~--A 172 (275)
T PLN02664 110 CRKPVIAAIHGACIGGGVDIVT----ACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSI-----------VGYGN--A 172 (275)
T ss_pred CCCCEEEEECCccccchHHHHH----hCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHH-----------hCHHH--H
Confidence 9999999999999999875222 358888887777665 2211111111110 00000 0
Q ss_pred HHHHHHHHHHhhCCHHHHHhCcccceecCc-hhhHHHHHHHHHHhhCC
Q 048389 508 FKAKVVEAYEKEGNAYYSTARLWDDGIIDP-ADTRKIIGFCISAALNR 554 (566)
Q Consensus 508 ~~~~l~~~~~~~~~~~~aa~~g~iD~II~p-~~tR~~L~~~L~~~~~~ 554 (566)
++-+.. -+..++..+.+.|++|+|+++ .++.+.+.+..+.+..+
T Consensus 173 -~~l~lt--g~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~ 217 (275)
T PLN02664 173 -MELALT--GRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAK 217 (275)
T ss_pred -HHHHHh--CCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhC
Confidence 011110 112577888999999999985 77776655554444433
No 98
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=96.94 E-value=0.0094 Score=60.59 Aligned_cols=163 Identities=14% Similarity=0.169 Sum_probs=92.8
Q ss_pred CCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhCCCcEEEEEcC-----CCCCCCccccc---cCch-hhHHHHHHH
Q 048389 124 HGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDS-----GGAYLPKQAEV---FPDK-ENFGRIFYN 194 (566)
Q Consensus 124 ~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~lPlV~l~ds-----gGarl~~~~~~---~~~~-~~~~~i~~~ 194 (566)
+|.-+.|.-|++... -++.......+..+++.+.+..+-+|.|.-+ +|+.+.+-... .... ..+...+..
T Consensus 6 ~~~v~~itlnrp~~~-Nal~~~~~~~l~~~l~~~~~d~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 84 (256)
T TIGR02280 6 EAGVARLTLNRPDKL-NSFTAEMHLELREALERVERDDARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNP 84 (256)
T ss_pred ECCEEEEEecCcccc-cCCCHHHHHHHHHHHHHHhcCCcEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHH
Confidence 343344455555433 3788999999999999887666555666433 23333210000 0000 001111111
Q ss_pred -HHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------c----cHHHHHhhhccc------ccccC
Q 048389 195 -QAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------A----GPPLVKAATGEE------ISAED 256 (566)
Q Consensus 195 -~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~----GP~vv~~~~ge~------v~~e~ 256 (566)
...+.....|+|++|-|.|+|||..++..||++|+. +++++++ . |...+....|.. ++.+.
T Consensus 85 ~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~-~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~l~g~~ 163 (256)
T TIGR02280 85 LVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAA-ESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEK 163 (256)
T ss_pred HHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEec-CCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCC
Confidence 122444578999999999999999998899998875 4566653 1 111122222221 13344
Q ss_pred CCcccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 257 LGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 257 lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
+.+.+.+ .-|++|.+++++ +..+.+.++...+
T Consensus 164 ~~a~eA~--~~Glv~~vv~~~-~l~~~a~~~a~~l 195 (256)
T TIGR02280 164 LDARTAA--SWGLIWQVVDDA-ALMDEAQALAVHL 195 (256)
T ss_pred CCHHHHH--HcCCcceeeChH-HHHHHHHHHHHHH
Confidence 4455556 489999999765 5666666666544
No 99
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=96.94 E-value=0.047 Score=55.81 Aligned_cols=158 Identities=13% Similarity=0.058 Sum_probs=94.5
Q ss_pred CccCHHHHHHHHHHHHHHhcC-C-CcEEEEEecC-CCCCchHH-Hhc--------------chHHHHHHHHHHHHcCCCC
Q 048389 377 GILFHESALKGAHFIELCTQR-K-IPLVFLQNIT-GFMVGSRS-EAN--------------GIAKAGAKMVMAVSCAKVP 438 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~~-~-iPlV~l~dt~-G~~~g~~~-E~~--------------g~~~~~a~~~~a~~~a~vP 438 (566)
.+++.+..+.+.+.++.++.. . +-+|+|.-.+ .|..|.+- |.. ........++.++.....|
T Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 105 (266)
T PRK05981 26 NAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCP 105 (266)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 678899999999888877653 3 5666665433 34444321 100 0111234567788899999
Q ss_pred EEEEEcCCCCchhhhhhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHH
Q 048389 439 KVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAK 511 (566)
Q Consensus 439 ~isvi~g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (566)
+|+.|-|.|+|||.--. +..|+++|.+++.++. ...-+....+.+. +... ...+
T Consensus 106 vIaav~G~a~GgG~~la----lacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~-----------vg~~----~a~~ 166 (266)
T PRK05981 106 IVTAVNGPAAGVGMSFA----LMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRL-----------VGKA----RAME 166 (266)
T ss_pred EEEEECCEeehHHHHHH----HhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHH-----------hHHH----HHHH
Confidence 99999999999986422 1369999998887763 2221222222110 0000 0011
Q ss_pred HHHHHH-hhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCCC
Q 048389 512 VVEAYE-KEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNRP 555 (566)
Q Consensus 512 l~~~~~-~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~~ 555 (566)
+. +. +..++..+.+.|+||.|+++.++-+......+.+...+
T Consensus 167 l~--l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~ 209 (266)
T PRK05981 167 LS--LLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANGP 209 (266)
T ss_pred HH--HhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcCC
Confidence 10 11 12577788899999999998877666665555554443
No 100
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=96.94 E-value=0.03 Score=57.10 Aligned_cols=156 Identities=15% Similarity=0.062 Sum_probs=92.3
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC-CCCCchHH-H------hcchHHHHHHHHHHHHcCCCCEEEEEcCCC
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT-GFMVGSRS-E------ANGIAKAGAKMVMAVSCAKVPKVTIIVGGS 447 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~-G~~~g~~~-E------~~g~~~~~a~~~~a~~~a~vP~isvi~g~~ 447 (566)
.+++.+....+.+.++.++ ...+-+|.|.-.+ .|..|.+- + .....+....++..+.....|+|+.|-|.|
T Consensus 30 Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 109 (261)
T PRK08138 30 NALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVNGYA 109 (261)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEE
Confidence 6789999999988888665 4566777776543 23433321 1 011123334567788889999999999999
Q ss_pred Cchhhh-hhccCCCCCCEEEEecCcee-------eccCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHHhh
Q 048389 448 FGAGNY-AMCGRAYSPNFMFLWPNARI-------SVMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEKE 519 (566)
Q Consensus 448 ~Ggg~~-am~~~~~~~d~~~A~p~A~i-------~vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 519 (566)
+|||.. ++ ..|+++|.+++++ |+...-+....+.+. +.... .++-+.. -+.
T Consensus 110 ~GgG~~lal-----acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-----------vG~~~---a~~l~l~--g~~ 168 (261)
T PRK08138 110 LGGGCELAM-----HADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRA-----------VGKFK---AMRMALT--GCM 168 (261)
T ss_pred EcHHHHHHH-----hCCEEEecCCCEeeCcccccccCCCCcHHHHHHHH-----------hCHHH---HHHHHHc--CCC
Confidence 999864 33 3577777665554 444333322222210 00100 0011100 123
Q ss_pred CCHHHHHhCcccceecCchhhHHHHHHHHHHhhC
Q 048389 520 GNAYYSTARLWDDGIIDPADTRKIIGFCISAALN 553 (566)
Q Consensus 520 ~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~ 553 (566)
.++..+.+.|+||.|+++.++.+......+.+..
T Consensus 169 ~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~ 202 (261)
T PRK08138 169 VPAPEALAIGLVSEVVEDEQTLPRALELAREIAR 202 (261)
T ss_pred CCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHh
Confidence 5788889999999999998766655554444443
No 101
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=96.93 E-value=0.036 Score=54.59 Aligned_cols=143 Identities=18% Similarity=0.152 Sum_probs=87.7
Q ss_pred CccCHHHHHHHHHHHHHHhc--CCCcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhhh
Q 048389 377 GILFHESALKGAHFIELCTQ--RKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYA 454 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~--~~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~a 454 (566)
+.++.+.+..+..-+.+.+. ..-||-+.+|+||- -.-.+-.+.+++...+.|+.|++.|-+++.|++-
T Consensus 34 ~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG----------~v~~GlaIyd~m~~~~~~V~Ti~~G~AaS~As~i 103 (201)
T PRK14513 34 TPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGG----------EVYAGLAIYDTMRYIKAPVSTICVGIAMSMGSVL 103 (201)
T ss_pred CEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCC----------chhhHHHHHHHHHhcCCCEEEEEEeeehhhHHHH
Confidence 66777777777554444443 35799999999994 3445567788899999999999999999987764
Q ss_pred -hccCCCCCCEEEEecCceeeccCHHH-----HHHHHhhh-h---------hhhhhhcCCCCchHHHHHHHHHHHHHHHh
Q 048389 455 -MCGRAYSPNFMFLWPNARISVMGGAQ-----AAGVLSQV-E---------KDKKKKQGIEWTKQEEEMFKAKVVEAYEK 518 (566)
Q Consensus 455 -m~~~~~~~d~~~A~p~A~i~vmg~e~-----aa~i~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 518 (566)
+++. ....+|.|+|++-+=.|.+ +..+.... + ....++-|+ +.+ ++.+.+... .
T Consensus 104 l~aG~---kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~--~~~---~I~~~~~rd--~ 173 (201)
T PRK14513 104 LMAGD---KGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDL--PHE---KLLRDMERD--Y 173 (201)
T ss_pred HhcCC---CCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCc--CHH---HHHHHhccC--c
Confidence 5542 1235677777766544421 11111100 0 001222222 122 232333221 2
Q ss_pred hCCHHHHHhCcccceecCchh
Q 048389 519 EGNAYYSTARLWDDGIIDPAD 539 (566)
Q Consensus 519 ~~~~~~aa~~g~iD~II~p~~ 539 (566)
..+|..+.+.|++|.|+++..
T Consensus 174 ~msa~EA~eyGliD~I~~~~~ 194 (201)
T PRK14513 174 FMSPEEAKAYGLIDSVIEPTR 194 (201)
T ss_pred ccCHHHHHHcCCCcEEeccCC
Confidence 368999999999999999854
No 102
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=96.93 E-value=0.013 Score=59.39 Aligned_cols=154 Identities=17% Similarity=0.187 Sum_probs=90.1
Q ss_pred EEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcCC-----CCCCCccccccCchhhH--HHHHHHHHHHcCC
Q 048389 130 FVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDSG-----GAYLPKQAEVFPDKENF--GRIFYNQAIMSAE 201 (566)
Q Consensus 130 v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~dsg-----Garl~~~~~~~~~~~~~--~~i~~~~a~ls~~ 201 (566)
+.-|++. ..=+++..-.+-+..+++.+.+. .+.+|.|.-.+ |..+.+-...-.....+ ..++.. +...
T Consensus 18 i~ln~p~-~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~---l~~~ 93 (249)
T PRK07110 18 VTMQDRV-NKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLYSL---ALNC 93 (249)
T ss_pred EEecCCC-ccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHHHH---HHcC
Confidence 3444444 34578888888888888877665 45667665533 33332100000000001 123322 3345
Q ss_pred CcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------c----cHHHHHhhhccc------ccccCCCcccccc
Q 048389 202 GIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------A----GPPLVKAATGEE------ISAEDLGGAAVHC 264 (566)
Q Consensus 202 ~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~----GP~vv~~~~ge~------v~~e~lGga~~h~ 264 (566)
..|+|+.|-|.|+|||..++..||++|+.+ ++++.+ . |...+....|.. ++.+.+.+.+.+
T Consensus 94 ~kPvIaav~G~a~GgG~~lal~cD~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~llltg~~~~a~eA~- 171 (249)
T PRK07110 94 PIPVIAAMQGHAIGGGLVLGLYADIVVLSR-ESVYTANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAELK- 171 (249)
T ss_pred CCCEEEEecCceechHHHHHHhCCEEEEeC-CCEecCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHH-
Confidence 789999999999999999999999998865 454432 1 112222222311 133444455555
Q ss_pred cccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 265 KTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 265 ~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
..|++|.+++++ +..+.+.++...+
T Consensus 172 -~~Glv~~vv~~~-~l~~~a~~~a~~l 196 (249)
T PRK07110 172 -KRGVPFPVLPRA-EVLEKALELARSL 196 (249)
T ss_pred -HcCCCeEEeChH-HHHHHHHHHHHHH
Confidence 489999999754 5667777776655
No 103
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=96.93 E-value=0.012 Score=59.83 Aligned_cols=145 Identities=17% Similarity=0.182 Sum_probs=82.5
Q ss_pred EEEEEecCccccccCChHHHHHHHHHHHHHHhCCCcEEEEEc-----CCCCCCCccccc----cCc---hhhHHHHHHHH
Q 048389 128 CMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVD-----SGGAYLPKQAEV----FPD---KENFGRIFYNQ 195 (566)
Q Consensus 128 v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~lPlV~l~d-----sgGarl~~~~~~----~~~---~~~~~~i~~~~ 195 (566)
..|.-|++. ..-+++....+.+..+++.+.. .+-+|.+.- |+|+.+.+-... ... ...+.+++.
T Consensus 15 ~~itlnrp~-~~Nal~~~~~~~L~~~l~~~~~-~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-- 90 (255)
T PRK07112 15 CFLQLHRPE-AQNTINDRLIAECMDVLDRCEH-AATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWH-- 90 (255)
T ss_pred EEEEEcCCC-ccCCCCHHHHHHHHHHHHHhhc-CceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhHHHHHHHHH--
Confidence 334444454 3358899999999999988773 566666643 344444321000 000 000112222
Q ss_pred HHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEec------cHH----HHHhhhcccc------cccCCCc
Q 048389 196 AIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLA------GPP----LVKAATGEEI------SAEDLGG 259 (566)
Q Consensus 196 a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~------GP~----vv~~~~ge~v------~~e~lGg 259 (566)
.+....+|+|+.|-|.|+|||..+...||++|+. +++++.+. -|. .+....|... +.+.+.+
T Consensus 91 -~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~-~~a~f~~pe~~~Gl~p~~~~~~l~~~vg~~~a~~l~l~g~~~~a 168 (255)
T PRK07112 91 -RLATGPYVTIAHVRGKVNAGGIGFVAASDIVIAD-ETAPFSLSELLFGLIPACVLPFLIRRIGTQKAHYMTLMTQPVTA 168 (255)
T ss_pred -HHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEc-CCCEEeCchhhhccCcchhhHHHHHHhCHHHHHHHHHhCCcccH
Confidence 2344578999999999999999998899998875 46666441 111 1111112111 2233334
Q ss_pred ccccccccCcceEEEcchhHH
Q 048389 260 AAVHCKTSGVSDYFAQDELHG 280 (566)
Q Consensus 260 a~~h~~~sG~~d~v~~de~~a 280 (566)
.+.+ ..|++|.+++++++.
T Consensus 169 ~eA~--~~Glv~~vv~~~~~~ 187 (255)
T PRK07112 169 QQAF--SWGLVDAYGANSDTL 187 (255)
T ss_pred HHHH--HcCCCceecCcHHHH
Confidence 3444 589999999866543
No 104
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=96.93 E-value=0.0063 Score=62.17 Aligned_cols=161 Identities=13% Similarity=0.140 Sum_probs=91.7
Q ss_pred ECCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhCCCcEEEEEc-------CCCCCCCcccc---ccCc-hhhHHHH
Q 048389 123 VHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVD-------SGGAYLPKQAE---VFPD-KENFGRI 191 (566)
Q Consensus 123 I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~lPlV~l~d-------sgGarl~~~~~---~~~~-~~~~~~i 191 (566)
++|.-+.|.-|++.. --+++..-...+..+++.+.+..+-+|.|.- |+|..+.+-.. .... ...+.++
T Consensus 10 ~~~~v~~itlnrp~~-~Nal~~~~~~~l~~al~~~~~d~v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l 88 (261)
T PRK11423 10 TINKIATITFNNPAK-RNALSKVLIDDLMQALSDLNRPEIRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQI 88 (261)
T ss_pred eECCEEEEEEcCccc-cCCCCHHHHHHHHHHHHHHhcCCceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHH
Confidence 344444555666654 3478888889999999888776655566542 23333321000 0000 0111122
Q ss_pred HHHHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------c----cHHHHHhhhccc------ccc
Q 048389 192 FYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------A----GPPLVKAATGEE------ISA 254 (566)
Q Consensus 192 ~~~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~----GP~vv~~~~ge~------v~~ 254 (566)
+. .+.....|+|+.|-|.|+|||.-+...||++|+. +++++++ . |...+-...|.. ++.
T Consensus 89 ~~---~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~a~~l~l~g 164 (261)
T PRK11423 89 LR---MIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAA-STSTFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMFFTA 164 (261)
T ss_pred HH---HHHhCCCCEEEEEecEEechHHHHHHhCCEEEec-CCCEecCchhhcCCCCCccHHHHHHHHhHHHHHHHHHHcC
Confidence 32 2344578999999999999999988889998875 4676643 1 111111111211 122
Q ss_pred cCCCcccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 255 EDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 255 e~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
+-+.+.+.+ ..|++|.++++ ++..+.++++...|
T Consensus 165 ~~~~a~eA~--~~GLv~~vv~~-~~l~~~a~~~a~~l 198 (261)
T PRK11423 165 SPITAQRAL--AVGILNHVVEV-EELEDFTLQMAHHI 198 (261)
T ss_pred CCcCHHHHH--HcCCcCcccCH-HHHHHHHHHHHHHH
Confidence 333344445 47999999975 45656666665544
No 105
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=96.93 E-value=0.036 Score=57.87 Aligned_cols=157 Identities=10% Similarity=0.076 Sum_probs=95.7
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC-CCCCchHH-Hh---c-------------------------c-----
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT-GFMVGSRS-EA---N-------------------------G----- 420 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~-G~~~g~~~-E~---~-------------------------g----- 420 (566)
.+++.+....+.+.++.++ ...+-+|.|.-.+ .|..|.+- |. . .
T Consensus 32 Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (302)
T PRK08272 32 NAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQ 111 (302)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccccccccccccccccccccccchhhHH
Confidence 7889999999999888765 4566777775433 23332221 10 0 0
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhhhhccCCCCCCEEEEecCceeeccCHH-----HHHHHHhhhhhhhhhh
Q 048389 421 IAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGA-----QAAGVLSQVEKDKKKK 495 (566)
Q Consensus 421 ~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~vmg~e-----~aa~i~~~~~~~~~~~ 495 (566)
.+....+++.++....+|+|+.|-|.|+|||..-. +.+|++||-++++++.-... ......+.+
T Consensus 112 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~la----lacD~~ias~~a~f~~pe~~~gg~~~~~~~~~~v------- 180 (302)
T PRK08272 112 MMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIA----LHCDQVIAADDAKIGYPPTRVWGVPATGMWAYRL------- 180 (302)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHH----HhCCEEEEeCCCEecCcchhcccCChHHHHHHHh-------
Confidence 12223456677888999999999999999987522 24699999988887653222 111111110
Q ss_pred cCCCCchHHHHHHHHHHHHHHH-hhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCCC
Q 048389 496 QGIEWTKQEEEMFKAKVVEAYE-KEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNRP 555 (566)
Q Consensus 496 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~~ 555 (566)
... ...++. +. +..++..+.+.|+||.|+++.++.+......+.+..++
T Consensus 181 -----G~~----~A~~ll--ltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~~ 230 (302)
T PRK08272 181 -----GPQ----RAKRLL--FTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAVP 230 (302)
T ss_pred -----hHH----HHHHHH--HcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcCC
Confidence 010 001110 11 12477788899999999999888776666665555443
No 106
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=96.92 E-value=0.052 Score=55.33 Aligned_cols=158 Identities=12% Similarity=0.091 Sum_probs=94.6
Q ss_pred CccCHHHHHHHHHHHHHHhcCCCcEEEEEecC-CCCCchHH-Hhc------------chHHHHHHHHHHHHcCCCCEEEE
Q 048389 377 GILFHESALKGAHFIELCTQRKIPLVFLQNIT-GFMVGSRS-EAN------------GIAKAGAKMVMAVSCAKVPKVTI 442 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~~~iPlV~l~dt~-G~~~g~~~-E~~------------g~~~~~a~~~~a~~~a~vP~isv 442 (566)
.+++.+....+.+.++.++...+.+|.|.-.+ .|..|.+- +.. .......+++..+.....|+|+.
T Consensus 26 Nal~~~~~~~l~~~~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 105 (262)
T PRK08140 26 NSFTREMHRELREALDQVEDDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIAA 105 (262)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 67889999999888887765556777775433 33333321 100 01112234667788899999999
Q ss_pred EcCCCCchhhh-hhccCCCCCCEEEEecCceee-------ccCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHH
Q 048389 443 IVGGSFGAGNY-AMCGRAYSPNFMFLWPNARIS-------VMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVE 514 (566)
Q Consensus 443 i~g~~~Ggg~~-am~~~~~~~d~~~A~p~A~i~-------vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 514 (566)
|-|.|+|||.. ++ ..|+++|.++++++ ++.+-+....+.+. +... ...++.
T Consensus 106 v~G~a~GgG~~lal-----acD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~-----------vG~~----~a~~l~- 164 (262)
T PRK08140 106 VNGVAAGAGANLAL-----ACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRL-----------VGMA----RALGLA- 164 (262)
T ss_pred ECCeeehhHHHHHH-----hCCEEEecCCCEEeccccccCCCCCccHHHHHHHH-----------hCHH----HHHHHH-
Confidence 99999999864 33 35888888777665 33222222222110 0000 001110
Q ss_pred HHHhhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCCC
Q 048389 515 AYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNRP 555 (566)
Q Consensus 515 ~~~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~~ 555 (566)
..-+..++..+.+.|+||+|+++.++.+...+..+.+..++
T Consensus 165 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~ 205 (262)
T PRK08140 165 LLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQP 205 (262)
T ss_pred HcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCC
Confidence 00112567778899999999999887777666666555443
No 107
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=96.91 E-value=0.052 Score=55.69 Aligned_cols=158 Identities=10% Similarity=0.053 Sum_probs=93.9
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC-CCCCchHHH-hc-------------------chHHHHHHHHHHHHc
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT-GFMVGSRSE-AN-------------------GIAKAGAKMVMAVSC 434 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~-G~~~g~~~E-~~-------------------g~~~~~a~~~~a~~~ 434 (566)
.+++.+....+.++++.++ ...+-+|.|.-.+ .|..|.+-. .. .......+++..+..
T Consensus 28 Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 107 (272)
T PRK06142 28 NAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAVAD 107 (272)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccccccchHHHHHHHHHHHHHHHHHHh
Confidence 6789999999999888775 4567788887654 344444211 00 011223456777888
Q ss_pred CCCCEEEEEcCCCCchhhhhhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHH
Q 048389 435 AKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEM 507 (566)
Q Consensus 435 a~vP~isvi~g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~ 507 (566)
...|+|+.|-|.|+|||.--.+ ..|+++|-++++++. ...-+....+.+. +.... +
T Consensus 108 ~~kpvIAav~G~a~GgG~~lal----acD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-----------~G~~~--a 170 (272)
T PRK06142 108 CRKPVIAAVQGWCIGGGVDLIS----ACDMRYASADAKFSVREVDLGMVADVGSLQRLPRI-----------IGDGH--L 170 (272)
T ss_pred CCCCEEEEecCccccchHHHHH----hCCEEEecCCCeecchhhhhCCCCCchHHHHHHHH-----------hCHHH--H
Confidence 9999999999999998864222 358888777766654 3222211111110 00000 0
Q ss_pred HHHHHHHHHHhhCCHHHHHhCcccceecCc-hhhHHHHHHHHHHhhCC
Q 048389 508 FKAKVVEAYEKEGNAYYSTARLWDDGIIDP-ADTRKIIGFCISAALNR 554 (566)
Q Consensus 508 ~~~~l~~~~~~~~~~~~aa~~g~iD~II~p-~~tR~~L~~~L~~~~~~ 554 (566)
.++. ..-+..++..+.+.|+||+|+++ .++.+......+.+...
T Consensus 171 --~~l~-l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~ 215 (272)
T PRK06142 171 --RELA-LTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAK 215 (272)
T ss_pred --HHHH-HhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhC
Confidence 1110 00122577888899999999986 66666665555555443
No 108
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=96.90 E-value=0.038 Score=56.12 Aligned_cols=157 Identities=13% Similarity=0.116 Sum_probs=92.0
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC-CCCCchH-HHh---------cchHHHHHHHHHHHHcCCCCEEEEEc
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT-GFMVGSR-SEA---------NGIAKAGAKMVMAVSCAKVPKVTIIV 444 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~-G~~~g~~-~E~---------~g~~~~~a~~~~a~~~a~vP~isvi~ 444 (566)
.+++.+..+.+.++++.++ ...+-+|.|.-.+ .|..|.+ .|. ........+++..+.....|+|+.|-
T Consensus 23 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~ 102 (257)
T PRK07658 23 NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIH 102 (257)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 6888999999998887665 4567777776433 1333332 111 11123345577888899999999999
Q ss_pred CCCCchhhhhhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHH
Q 048389 445 GGSFGAGNYAMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYE 517 (566)
Q Consensus 445 g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 517 (566)
|.++|||.--.+ ..|+++|.+++++++ .+.-+....+.+. -| .. ...++. ..-
T Consensus 103 G~a~GgG~~lal----acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-------vG----~~----~a~~l~-l~g 162 (257)
T PRK07658 103 GAALGGGLELAM----SCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRY-------VG----KA----KALEMM-LTS 162 (257)
T ss_pred CeeeeHHHHHHH----hCCEEEecCCCcccCcccccCCCCCCcHHHHHHHH-------hC----HH----HHHHHH-HcC
Confidence 999999864221 358888887766554 3222222212110 00 00 001110 001
Q ss_pred hhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhC
Q 048389 518 KEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALN 553 (566)
Q Consensus 518 ~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~ 553 (566)
+..++..+.+.|++|.|+++.++-+......+.+..
T Consensus 163 ~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~ 198 (257)
T PRK07658 163 EPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAG 198 (257)
T ss_pred CCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHh
Confidence 124677788999999999987665555555444443
No 109
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=96.90 E-value=0.038 Score=56.03 Aligned_cols=157 Identities=14% Similarity=0.050 Sum_probs=93.7
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC-CCCCchH-HHhc------c---hHHHHHHHHHHHHcCCCCEEEEEc
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT-GFMVGSR-SEAN------G---IAKAGAKMVMAVSCAKVPKVTIIV 444 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~-G~~~g~~-~E~~------g---~~~~~a~~~~a~~~a~vP~isvi~ 444 (566)
.+++.+....+.++++.++ ..++-+|.|.-.+ .|..|.+ .|.. . ..+...+++..+....+|+|+.|-
T Consensus 23 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~ 102 (249)
T PRK07938 23 NALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAVH 102 (249)
T ss_pred ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 6788999999999888765 4556677776533 3333332 1110 0 112234567778899999999999
Q ss_pred CCCCchhhh-hhccCCCCCCEEEEecCceeeccCHH----HHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHHhh
Q 048389 445 GGSFGAGNY-AMCGRAYSPNFMFLWPNARISVMGGA----QAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEKE 519 (566)
Q Consensus 445 g~~~Ggg~~-am~~~~~~~d~~~A~p~A~i~vmg~e----~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 519 (566)
|.++|||.- ++ ..|++++.++++++.-... +....+.+. +.... .++-+.. -+.
T Consensus 103 G~a~GgG~~Lal-----~cD~ria~~~a~f~~pe~~~G~~g~~~~l~~~-----------vg~~~---a~~l~lt--g~~ 161 (249)
T PRK07938 103 GFCLGGGIGLVG-----NADVIVASDDATFGLPEVDRGALGAATHLQRL-----------VPQHL---MRALFFT--AAT 161 (249)
T ss_pred CEEeehHHHHHH-----hCCEEEEeCCCEeeCccceecCchhHHHHHHh-----------cCHHH---HHHHHHh--CCc
Confidence 999999864 33 3588887776665542111 111111110 01100 0011100 123
Q ss_pred CCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 520 GNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 520 ~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
.++..+.+.|+||.|+++.++-+...+..+.+...
T Consensus 162 ~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 196 (249)
T PRK07938 162 ITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAK 196 (249)
T ss_pred CCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhC
Confidence 57888899999999999988777766666555543
No 110
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=96.89 E-value=0.0095 Score=60.58 Aligned_cols=155 Identities=17% Similarity=0.206 Sum_probs=88.5
Q ss_pred EEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcC-----CCCCCCccccc--cCch-hhHHHHHHHHHHHc
Q 048389 129 MFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDS-----GGAYLPKQAEV--FPDK-ENFGRIFYNQAIMS 199 (566)
Q Consensus 129 ~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~ds-----gGarl~~~~~~--~~~~-~~~~~i~~~~a~ls 199 (566)
.|.-|.+. ..-++...-.+.+..+++.+.+. .+-+|.|.-. .|..+.+-... .... ..+.+.+. .+.
T Consensus 14 ~itlnrp~-~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~---~l~ 89 (255)
T PRK09674 14 LLTLNRPE-ARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQ---RLQ 89 (255)
T ss_pred EEEEcCCC-ccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHHHH---HHH
Confidence 33444444 45688899999999999888755 4556666442 23333211000 0000 01112222 234
Q ss_pred CCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------c----cHHHHHhhhccc------ccccCCCcccc
Q 048389 200 AEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------A----GPPLVKAATGEE------ISAEDLGGAAV 262 (566)
Q Consensus 200 ~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~----GP~vv~~~~ge~------v~~e~lGga~~ 262 (566)
....|+|+.|-|+|+|||..+...||++|+.+ ++++++ . |...+...+|.. ++.+.+.+.+.
T Consensus 90 ~~~kPvIAav~G~a~GgG~~lalacD~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA 168 (255)
T PRK09674 90 AFNKPLIAAVNGYALGAGCELALLCDIVIAGE-NARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQA 168 (255)
T ss_pred hCCCCEEEEECCEeehHHHHHHHhCCEEEecC-CCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHH
Confidence 45789999999999999999988999988764 565543 1 111121122211 13334445455
Q ss_pred cccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 263 HCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 263 h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
+ ..|++|.+++++ +..+.++++...|
T Consensus 169 ~--~~Glv~~vv~~~-~~~~~a~~~a~~l 194 (255)
T PRK09674 169 Q--QAGLVSEVFPPE-LTLERALQLASKI 194 (255)
T ss_pred H--HcCCCcEecChH-HHHHHHHHHHHHH
Confidence 6 479999999764 3455555555544
No 111
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=96.89 E-value=0.075 Score=54.11 Aligned_cols=157 Identities=13% Similarity=0.089 Sum_probs=92.3
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC-CCCCchH-HH-----------hcchHHHHHHHHHHHHcCCCCEEEE
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT-GFMVGSR-SE-----------ANGIAKAGAKMVMAVSCAKVPKVTI 442 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~-G~~~g~~-~E-----------~~g~~~~~a~~~~a~~~a~vP~isv 442 (566)
.+++.+....+.+.++.++ ...+-+|.|.-.+ .|..|.+ .+ ..........++..+....+|+|+.
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAa 104 (260)
T PRK07511 25 NALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIAA 104 (260)
T ss_pred cCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 6788999999999888775 3556667665422 2333321 11 1112233455677888899999999
Q ss_pred EcCCCCchhhhhhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHH
Q 048389 443 IVGGSFGAGNYAMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEA 515 (566)
Q Consensus 443 i~g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 515 (566)
|-|.++|||..-.. ..|+++|.+++++++ ..+-+....+.+. +... ...++.-
T Consensus 105 v~G~a~GgG~~lal----a~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-----------vg~~----~a~~l~l- 164 (260)
T PRK07511 105 VEGAAAGAGFSLAL----ACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARA-----------LPRQ----LATELLL- 164 (260)
T ss_pred ECCeeehHHHHHHH----hCCEEEeeCCCEEeccccccCcCCCchHHHHHHHH-----------hCHH----HHHHHHH-
Confidence 99999999875222 368888887776664 2222322222210 0000 0011100
Q ss_pred HHhhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhC
Q 048389 516 YEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALN 553 (566)
Q Consensus 516 ~~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~ 553 (566)
.-+..++..+.+.|++|.|+++.++-+......+.+..
T Consensus 165 tg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~ 202 (260)
T PRK07511 165 EGKPISAERLHALGVVNRLAEPGQALAEALALADQLAA 202 (260)
T ss_pred hCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHh
Confidence 01125777888999999999987765554444444433
No 112
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=96.88 E-value=0.03 Score=57.13 Aligned_cols=157 Identities=13% Similarity=0.132 Sum_probs=93.8
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC--CCCCchHHHh---------cchH-HHHHHHHHHHHcCCCCEEEEE
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT--GFMVGSRSEA---------NGIA-KAGAKMVMAVSCAKVPKVTII 443 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~--G~~~g~~~E~---------~g~~-~~~a~~~~a~~~a~vP~isvi 443 (566)
.+++.+....+.+.++..+ ...+-+|.|.-.+ .|..|.+-.. .+.. .....++..+.....|+|+.|
T Consensus 25 Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 104 (259)
T TIGR01929 25 NAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMV 104 (259)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 6788888888888887665 4556677776544 2555443210 0000 112345667888999999999
Q ss_pred cCCCCchhhh-hhccCCCCCCEEEEecCceeecc-------CHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHH
Q 048389 444 VGGSFGAGNY-AMCGRAYSPNFMFLWPNARISVM-------GGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEA 515 (566)
Q Consensus 444 ~g~~~Ggg~~-am~~~~~~~d~~~A~p~A~i~vm-------g~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 515 (566)
-|.++|||.. ++ ..|+++|.+++++++- .+-+....+.+. +... . .++-+..
T Consensus 105 ~G~a~GgG~~lal-----acD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~-----------vG~~-~--a~~l~l~- 164 (259)
T TIGR01929 105 NGYAIGGGHVLHV-----VCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARI-----------VGQK-K--AREIWFL- 164 (259)
T ss_pred cCEEehHHHHHHH-----hCCEEEecCCCEecCcccccccCCCccHHHHHHHH-----------hHHH-H--HHHHHHh-
Confidence 9999999875 33 3588888877666552 222222222211 0000 0 0011100
Q ss_pred HHhhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 516 YEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 516 ~~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
-+..++..+.+.|++|+|+++.++.+......+.+...
T Consensus 165 -g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 202 (259)
T TIGR01929 165 -CRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQK 202 (259)
T ss_pred -CCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhC
Confidence 11257778889999999999988777666665555543
No 113
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=96.88 E-value=0.0085 Score=57.65 Aligned_cols=89 Identities=21% Similarity=0.245 Sum_probs=62.3
Q ss_pred CccCHHHHHHHHHHHHHH--hcCCCcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhhh
Q 048389 377 GILFHESALKGAHFIELC--TQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYA 454 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~--~~~~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~a 454 (566)
|.++.+.+..+..-+... ...+-||.++.||||- .+..+-.+.+++...+.|+.+++.|.+.+.|.+.
T Consensus 23 g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG----------~v~~g~~i~~~i~~~~~~v~t~~~G~aaSaa~~i 92 (182)
T PF00574_consen 23 GPIDEESANRLISQLLYLENEDKNKPINIYINSPGG----------DVDAGLAIYDAIRSSKAPVTTVVLGLAASAATLI 92 (182)
T ss_dssp SSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEB----------CHHHHHHHHHHHHHSSSEEEEEEEEEEETHHHHH
T ss_pred CccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCC----------ccHHHHHHHHHHHhcCCCeEEEEeCccccceehh
Confidence 778888888877644433 3567899999999994 4566778889999999999999999999888764
Q ss_pred hc-cCCCCCCEEEEecCceeeccCH
Q 048389 455 MC-GRAYSPNFMFLWPNARISVMGG 478 (566)
Q Consensus 455 m~-~~~~~~d~~~A~p~A~i~vmg~ 478 (566)
++ +.. .-.++.|++.+.+-.|
T Consensus 93 ~~ag~~---~~R~~~~~s~~m~H~p 114 (182)
T PF00574_consen 93 FLAGDK---GKRYASPNSRFMIHQP 114 (182)
T ss_dssp HHTSST---TTEEE-TT-EEEES-C
T ss_pred hhcCCc---CceeeeecCEEEeecc
Confidence 43 321 1135666666654333
No 114
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=96.87 E-value=0.012 Score=59.99 Aligned_cols=160 Identities=14% Similarity=0.125 Sum_probs=92.6
Q ss_pred CCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcC-----CCCCCCccccccCc---hhhHHHHHHH
Q 048389 124 HGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDS-----GGAYLPKQAEVFPD---KENFGRIFYN 194 (566)
Q Consensus 124 ~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~ds-----gGarl~~~~~~~~~---~~~~~~i~~~ 194 (566)
+|.-..|.-|++. ..-++...-.+.+..+++.+... .+-+|.|.-. +|+.+.+-...-.. ...+..++..
T Consensus 11 ~~~va~Itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (258)
T PRK06190 11 HDRVRTLTLNRPE-ARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPA 89 (258)
T ss_pred eCCEEEEEEcCCc-ccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHH
Confidence 3333334445544 44589999999999999887765 4555666442 34443211000000 0011223332
Q ss_pred HHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------c----cHHHHHhhhccc------ccccCC
Q 048389 195 QAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------A----GPPLVKAATGEE------ISAEDL 257 (566)
Q Consensus 195 ~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~----GP~vv~~~~ge~------v~~e~l 257 (566)
+.....|+|+.|-|.|+|||..++..||++|+.+ ++++.+ . |...+....|.. ++.+.+
T Consensus 90 ---i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~ 165 (258)
T PRK06190 90 ---WPAMRKPVIGAINGAAVTGGLELALACDILIASE-RARFADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFL 165 (258)
T ss_pred ---HHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeC-CCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCcc
Confidence 3444789999999999999999988999988764 566543 1 111122222221 133445
Q ss_pred CcccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 258 GGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 258 Gga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
.+.+.+ ..|++|.+++++ +..+.+.++...+
T Consensus 166 ~a~eA~--~~GLv~~vv~~~-~l~~~a~~~a~~l 196 (258)
T PRK06190 166 DAADAL--RAGLVTEVVPHD-ELLPRARRLAASI 196 (258)
T ss_pred CHHHHH--HcCCCeEecCHh-HHHHHHHHHHHHH
Confidence 555555 489999999753 5566666666554
No 115
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=96.87 E-value=0.049 Score=55.56 Aligned_cols=157 Identities=13% Similarity=0.070 Sum_probs=93.8
Q ss_pred CccCHHHHHHHHHHHHHHhc-CCCcEEEEEecC-CCCCchHH-Hhc-----------chHHHHHHHHHHHHcCCCCEEEE
Q 048389 377 GILFHESALKGAHFIELCTQ-RKIPLVFLQNIT-GFMVGSRS-EAN-----------GIAKAGAKMVMAVSCAKVPKVTI 442 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~-~~iPlV~l~dt~-G~~~g~~~-E~~-----------g~~~~~a~~~~a~~~a~vP~isv 442 (566)
.+++.+..+.+.++++.++. ..+-+|.|.-.+ .|..|.+- |.. ...+....++..+.....|+|+.
T Consensus 27 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 106 (262)
T PRK07468 27 NALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIGR 106 (262)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 67899999999998887764 456667776533 34444321 110 01122345677888999999999
Q ss_pred EcCCCCchhhhhhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHH
Q 048389 443 IVGGSFGAGNYAMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEA 515 (566)
Q Consensus 443 i~g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 515 (566)
|-|.++|||..-.+ .+|+++|.++++++. .+.-+....+.+ +... ...++. .
T Consensus 107 v~G~a~GgG~~lal----a~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~~~------------vG~~----~a~~ll-l 165 (262)
T PRK07468 107 IQGQAFGGGVGLIS----VCDVAIAVSGARFGLTETRLGLIPATISPYVVAR------------MGEA----NARRVF-M 165 (262)
T ss_pred ECCEEEhHHHHHHH----hCCEEEEeCCCEEeCchhccCCCcccchhhHHhh------------ccHH----HHHHHH-H
Confidence 99999999864222 358888887765553 322222221111 1110 001111 0
Q ss_pred HHhhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 516 YEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 516 ~~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
.-+..++..+.+.|+||+|+++.++.+......+.+...
T Consensus 166 ~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~ 204 (262)
T PRK07468 166 SARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSC 204 (262)
T ss_pred hCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhc
Confidence 012357778889999999999888777665555544433
No 116
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=96.87 E-value=0.045 Score=55.68 Aligned_cols=156 Identities=11% Similarity=0.051 Sum_probs=93.2
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC-CCCCchH-HHh---c---chHHHHHHHHHHHHcCCCCEEEEEcCCC
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT-GFMVGSR-SEA---N---GIAKAGAKMVMAVSCAKVPKVTIIVGGS 447 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~-G~~~g~~-~E~---~---g~~~~~a~~~~a~~~a~vP~isvi~g~~ 447 (566)
.+++.+..+.+.++++.++ ...+-+|.|.-.+ .|..|.+ .+. . .......+++..+.....|+|+.|-|.+
T Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a 105 (257)
T PRK05862 26 NALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAGYA 105 (257)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEE
Confidence 6789999999999887665 4566778887654 2333332 110 0 1112334566778889999999999999
Q ss_pred Cchhhh-hhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHHhh
Q 048389 448 FGAGNY-AMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEKE 519 (566)
Q Consensus 448 ~Ggg~~-am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 519 (566)
+|||.. ++ .+|+++|.+++++++ .+.-+....+.+. +.... .++-+.. -+.
T Consensus 106 ~GgG~~lal-----acD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-----------vG~~~---a~~l~l~--g~~ 164 (257)
T PRK05862 106 LGGGCELAM-----MCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRA-----------VGKAK---AMDLCLT--GRM 164 (257)
T ss_pred eHHHHHHHH-----HCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHH-----------hCHHH---HHHHHHh--CCc
Confidence 999864 33 358888887666554 3222222222110 00100 0011110 113
Q ss_pred CCHHHHHhCcccceecCchhhHHHHHHHHHHhhC
Q 048389 520 GNAYYSTARLWDDGIIDPADTRKIIGFCISAALN 553 (566)
Q Consensus 520 ~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~ 553 (566)
.++..+.+.|++|+|+++.++-+......+.+..
T Consensus 165 ~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~ 198 (257)
T PRK05862 165 MDAAEAERAGLVSRVVPADKLLDEALAAATTIAS 198 (257)
T ss_pred cCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHh
Confidence 5788889999999999987766655555544443
No 117
>PRK11778 putative inner membrane peptidase; Provisional
Probab=96.86 E-value=0.013 Score=61.79 Aligned_cols=163 Identities=13% Similarity=0.062 Sum_probs=95.3
Q ss_pred EEEEEEeCCccCHHHHHHH----HHHHHHHhcCCCcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEc
Q 048389 369 PVGIIGNNGILFHESALKG----AHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIV 444 (566)
Q Consensus 369 ~Vgvvan~G~l~~~~a~K~----ar~i~l~~~~~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~ 444 (566)
.|.||-.+|.+.+...... ...++.+... --||+-+|+||-++..- ...+..+..+.+.+.|+++.+-
T Consensus 91 ~v~VI~~~G~I~~~~~~~l~e~i~a~l~~A~~~-~aVvLridSpGG~v~~s-------~~a~~~l~~lr~~~kpVva~v~ 162 (330)
T PRK11778 91 RLFVLDFKGDIDASEVESLREEITAILAVAKPG-DEVLLRLESPGGVVHGY-------GLAASQLQRLRDAGIPLTVAVD 162 (330)
T ss_pred eEEEEEEEEEECCCcchhhHHHHHHHHHhccCC-CeEEEEEeCCCCchhHH-------HHHHHHHHHHHhcCCCEEEEEC
Confidence 4666666666654333222 2233334322 45899999999865221 1123335567778899999888
Q ss_pred CCCCchhhhhhccCCCCCCEEEEecCceeeccCHHHHH----HHHhhh--hh-----hhhhhcCC---CCchHHHHHHHH
Q 048389 445 GGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGAQAA----GVLSQV--EK-----DKKKKQGI---EWTKQEEEMFKA 510 (566)
Q Consensus 445 g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~vmg~e~aa----~i~~~~--~~-----~~~~~~~~---~~~~~~~~~~~~ 510 (566)
+-+..||||..| .+|-+||-|.+.+|..|.-... ..+.+. +. ..-+.... +.++++++.+++
T Consensus 163 ~~AASggY~iAs----aAD~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~~~see~Re~~q~ 238 (330)
T PRK11778 163 KVAASGGYMMAC----VADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFGENTEEGREKFRE 238 (330)
T ss_pred CchhhHHHHHHH----hCCEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCCCCCHHHHHHHHH
Confidence 888888888654 3699999999999887763211 111110 00 01111111 335666666666
Q ss_pred HHHHHHHhh------C---------------CHHHHHhCcccceecCchhhHHH
Q 048389 511 KVVEAYEKE------G---------------NAYYSTARLWDDGIIDPADTRKI 543 (566)
Q Consensus 511 ~l~~~~~~~------~---------------~~~~aa~~g~iD~II~p~~tR~~ 543 (566)
.|.+.|+.. . ++..+.+.|+||+|-...|.-..
T Consensus 239 ~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~ 292 (330)
T PRK11778 239 ELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLE 292 (330)
T ss_pred HHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHH
Confidence 665444321 1 24456789999999987665433
No 118
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=96.85 E-value=0.011 Score=60.10 Aligned_cols=163 Identities=17% Similarity=0.197 Sum_probs=91.4
Q ss_pred ECCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcCC-----CCCCCccccccCchhhH-HHHHHHH
Q 048389 123 VHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDSG-----GAYLPKQAEVFPDKENF-GRIFYNQ 195 (566)
Q Consensus 123 I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~dsg-----Garl~~~~~~~~~~~~~-~~i~~~~ 195 (566)
++|.-..|.-|.+. ..-+++....+.+..+++.+... .+-+|.|.-.+ |+.+.+-.. ......+ ...+...
T Consensus 10 ~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~-~~~~~~~~~~~~~~~ 87 (257)
T PRK05862 10 TRGRVGLITLNRPK-ALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMAD-LSFMDVYKGDYITNW 87 (257)
T ss_pred eeCCEEEEEEcCCc-ccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhc-cchhHHHHHHHHHHH
Confidence 34443344445554 34588999999999998877654 45566665433 333321000 0000011 1112222
Q ss_pred HHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------c----cHHHHHhhhccc------ccccCCC
Q 048389 196 AIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------A----GPPLVKAATGEE------ISAEDLG 258 (566)
Q Consensus 196 a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~----GP~vv~~~~ge~------v~~e~lG 258 (566)
..+.....|+|++|-|.|+|||..++..||++|+. +++++.+ . |...+...+|.. ++.+.+.
T Consensus 88 ~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~ 166 (257)
T PRK05862 88 EKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAA-DTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMD 166 (257)
T ss_pred HHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEe-CCCEEeCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccC
Confidence 23444578999999999999999998899998875 4565543 1 111122222211 1223333
Q ss_pred cccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 259 GAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 259 ga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
+.+.+ ..|++|.+++++ +..+.++++...|
T Consensus 167 a~eA~--~~Glv~~vv~~~-~l~~~a~~~a~~l 196 (257)
T PRK05862 167 AAEAE--RAGLVSRVVPAD-KLLDEALAAATTI 196 (257)
T ss_pred HHHHH--HcCCCCEeeCHh-HHHHHHHHHHHHH
Confidence 44445 479999999753 4555555555444
No 119
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=96.84 E-value=0.058 Score=54.91 Aligned_cols=157 Identities=12% Similarity=0.131 Sum_probs=95.1
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC--CCCCchHH-Hhcc-------hHHHHHHHHHHHHcCCCCEEEEEcC
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT--GFMVGSRS-EANG-------IAKAGAKMVMAVSCAKVPKVTIIVG 445 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~--G~~~g~~~-E~~g-------~~~~~a~~~~a~~~a~vP~isvi~g 445 (566)
.+++.+....+.++++.++ ...+-+|.|.-.. .|..|.+- +..+ .......++..+.....|+|+.|-|
T Consensus 24 Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G 103 (256)
T TIGR03210 24 NAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQG 103 (256)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 6789999998988888775 4556677776544 25444431 1110 1112345667888899999999999
Q ss_pred CCCchhhh-hhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHH
Q 048389 446 GSFGAGNY-AMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYE 517 (566)
Q Consensus 446 ~~~Ggg~~-am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 517 (566)
.|+|||.- ++ ..|+++|-+++++++ ..|......+.+. +... ...++. ..-
T Consensus 104 ~a~GgG~~lal-----~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~-----------vG~~----~A~~ll-l~g 162 (256)
T TIGR03210 104 YAIGGGNVLVT-----ICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARV-----------VGEK----KAREIW-YLC 162 (256)
T ss_pred EEehhhHHHHH-----hCCEEEEeCCCEEecccccccccCCccHHHHHHHH-----------hCHH----HHHHHH-HhC
Confidence 99999864 33 358887777666654 3333333222211 0010 001111 001
Q ss_pred hhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 518 KEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 518 ~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
+..++..+.+.|+||+|+++.++-+......+.+...
T Consensus 163 ~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~ 199 (256)
T TIGR03210 163 RRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEK 199 (256)
T ss_pred CCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhC
Confidence 1257778888999999999887766666655555543
No 120
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=96.79 E-value=0.014 Score=59.52 Aligned_cols=162 Identities=16% Similarity=0.122 Sum_probs=91.0
Q ss_pred CCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcCC-----CCCCCccccccCchhhHHHHH-HHHH
Q 048389 124 HGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDSG-----GAYLPKQAEVFPDKENFGRIF-YNQA 196 (566)
Q Consensus 124 ~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~dsg-----Garl~~~~~~~~~~~~~~~i~-~~~a 196 (566)
+|.-..|.-|.+.. .-++...-...+..+++.+.+. .+-+|.|.-.+ |+.+.+-.. ......+.+.+ ....
T Consensus 15 ~~~v~~itlnrp~~-~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~-~~~~~~~~~~~~~~~~ 92 (261)
T PRK08138 15 ADGVALLRLNRPEA-RNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFAT-AGAIEMYLRHTERYWE 92 (261)
T ss_pred cCCEEEEEEcCCcc-cCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhc-cchhHHHHHHHHHHHH
Confidence 44334445555553 3478888888898888877654 45566665432 233321000 00000111111 1122
Q ss_pred HHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------c----cHHHHHhhhccc------ccccCCCc
Q 048389 197 IMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------A----GPPLVKAATGEE------ISAEDLGG 259 (566)
Q Consensus 197 ~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~----GP~vv~~~~ge~------v~~e~lGg 259 (566)
.+.....|+|+.|-|.|+|||..+...||++|+. +++++.+ . |...+...+|.. ++.+.+.+
T Consensus 93 ~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a 171 (261)
T PRK08138 93 AIAQCPKPVIAAVNGYALGGGCELAMHADIIVAG-ESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPA 171 (261)
T ss_pred HHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEec-CCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCH
Confidence 3444578999999999999999998899998875 4565543 1 111122222211 12334444
Q ss_pred ccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 260 AAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 260 a~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
.+.+ .-|++|.+++++ +..+.++++...+
T Consensus 172 ~eA~--~~Glv~~vv~~~-~l~~~a~~~a~~l 200 (261)
T PRK08138 172 PEAL--AIGLVSEVVEDE-QTLPRALELAREI 200 (261)
T ss_pred HHHH--HCCCCcEecCch-HHHHHHHHHHHHH
Confidence 4556 479999999764 4566666666544
No 121
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=96.79 E-value=0.055 Score=55.11 Aligned_cols=156 Identities=10% Similarity=0.067 Sum_probs=94.0
Q ss_pred CccCHHHHHHHHHHHHHHhc-CCCcEEEEEecC--CCCCchHHHh-c------------chHHHHHHHHHHHHcCCCCEE
Q 048389 377 GILFHESALKGAHFIELCTQ-RKIPLVFLQNIT--GFMVGSRSEA-N------------GIAKAGAKMVMAVSCAKVPKV 440 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~-~~iPlV~l~dt~--G~~~g~~~E~-~------------g~~~~~a~~~~a~~~a~vP~i 440 (566)
.+++.+....+.++++.+++ ..+-+|.|.-.+ .|..|.+-.. . ...+...+++..+....+|+|
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 104 (260)
T PRK05980 25 NALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVI 104 (260)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 67888999999888887654 566777776654 3555543211 0 111122346677888999999
Q ss_pred EEEcCCCCchhhh-hhccCCCCCCEEEEecCceee-------ccCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHH
Q 048389 441 TIIVGGSFGAGNY-AMCGRAYSPNFMFLWPNARIS-------VMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKV 512 (566)
Q Consensus 441 svi~g~~~Ggg~~-am~~~~~~~d~~~A~p~A~i~-------vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 512 (566)
+.|-|.|+|||.- ++ .+|+++|-++++++ +..+-+....+.+. +.... +. +-+
T Consensus 105 aav~G~a~GgG~~lal-----~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-----------vG~~~--a~-~l~ 165 (260)
T PRK05980 105 AAVNGLAFGGGCEITE-----AVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRL-----------AGRKR--AL-ELL 165 (260)
T ss_pred EEEcCEEEhhhhHHhH-----hCCEEEecCCCEecCcccccCCCCCchHhhHHHhh-----------cCHHH--HH-HHH
Confidence 9999999999864 33 35888777666554 33332333222210 00100 00 101
Q ss_pred HHHHHhhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhC
Q 048389 513 VEAYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALN 553 (566)
Q Consensus 513 ~~~~~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~ 553 (566)
.. -+..++..+.+.|+||+|+++.++.+......+.+..
T Consensus 166 l~--g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~ 204 (260)
T PRK05980 166 LT--GDAFSAERALEIGLVNAVVPHEELLPAARALARRIIR 204 (260)
T ss_pred Hc--CCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHh
Confidence 00 1125777888999999999998877766555544443
No 122
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=96.78 E-value=0.06 Score=54.70 Aligned_cols=157 Identities=14% Similarity=0.127 Sum_probs=95.9
Q ss_pred CccCHHHHHHHHHHHHHHhc-CCCcEEEEEecC-CCCCchHHH----h----cchHHHHHHHHHHHHcCCCCEEEEEcCC
Q 048389 377 GILFHESALKGAHFIELCTQ-RKIPLVFLQNIT-GFMVGSRSE----A----NGIAKAGAKMVMAVSCAKVPKVTIIVGG 446 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~-~~iPlV~l~dt~-G~~~g~~~E----~----~g~~~~~a~~~~a~~~a~vP~isvi~g~ 446 (566)
.+++.+..+.+.+.++..+. ..+-+|.|.-.+ .|..|.+-. . ........+++..+.....|+|+.|-|.
T Consensus 27 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~ 106 (259)
T PRK06688 27 NALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVNGP 106 (259)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCCCEEEEECCe
Confidence 67889998888888876654 567778886543 233333211 0 1123344567788889999999999999
Q ss_pred CCchhhh-hhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHHh
Q 048389 447 SFGAGNY-AMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEK 518 (566)
Q Consensus 447 ~~Ggg~~-am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 518 (566)
++|||.. ++ ..|+++|-+++++++ .++-+....+.+. +... ...++. ..-+
T Consensus 107 a~GgG~~lal-----~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~-----------~G~~----~a~~l~-l~g~ 165 (259)
T PRK06688 107 AVGVGVSLAL-----ACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRL-----------IGRA----RAAEML-LLGE 165 (259)
T ss_pred eecHHHHHHH-----hCCEEEecCCCEecCchhhcCCCCCcchhhHHHHH-----------hhHH----HHHHHH-HhCC
Confidence 9999875 33 358888877766654 3222222222110 0000 001110 0012
Q ss_pred hCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 519 EGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 519 ~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
..++..+.+.|+||+|+++.++.+......+.+...
T Consensus 166 ~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~ 201 (259)
T PRK06688 166 PLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAG 201 (259)
T ss_pred ccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhC
Confidence 247778889999999999888777766666555544
No 123
>PRK05869 enoyl-CoA hydratase; Validated
Probab=96.77 E-value=0.07 Score=53.21 Aligned_cols=159 Identities=18% Similarity=0.132 Sum_probs=95.1
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecCC-CCCchH-HHh--------cchHHHHHHHHHHHHcCCCCEEEEEcC
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNITG-FMVGSR-SEA--------NGIAKAGAKMVMAVSCAKVPKVTIIVG 445 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~G-~~~g~~-~E~--------~g~~~~~a~~~~a~~~a~vP~isvi~g 445 (566)
.+++++....+.+.++-.+ ..++-+|.|.-.+. |..|.+ .+. .-..+...+++..+....+|+|+.|-|
T Consensus 29 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G 108 (222)
T PRK05869 29 NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITG 108 (222)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 6788888888888777544 57777777764332 333322 111 111223345778888999999999999
Q ss_pred CCCchhhhhhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHHh
Q 048389 446 GSFGAGNYAMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEK 518 (566)
Q Consensus 446 ~~~Ggg~~am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 518 (566)
.++|||..-.+ ..|+++|-++++++. ..+-+....+.+. +.... .++-+.. -+
T Consensus 109 ~a~GgG~~lal----acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-----------ig~~~---a~~l~lt--g~ 168 (222)
T PRK05869 109 YALGAGLTLAL----AADWRVSGDNVKFGATEILAGLAPSGDGMARLTRA-----------AGPSR---AKELVFS--GR 168 (222)
T ss_pred EeecHHHHHHH----hCCEEEecCCCEEcCchhccCCCCCccHHHHHHHH-----------hCHHH---HHHHHHc--CC
Confidence 99999875322 257777766655544 3333322222210 11110 0011110 11
Q ss_pred hCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCCC
Q 048389 519 EGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNRP 555 (566)
Q Consensus 519 ~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~~ 555 (566)
..++..+.+.|++|+|+++.++.+...+..+.+...+
T Consensus 169 ~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~ 205 (222)
T PRK05869 169 FFDAEEALALGLIDEMVAPDDVYDAAAAWARRFLDGP 205 (222)
T ss_pred CcCHHHHHHCCCCCEeeCchHHHHHHHHHHHHHHcCC
Confidence 2578888999999999999887777666665555543
No 124
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=96.77 E-value=0.05 Score=55.93 Aligned_cols=156 Identities=12% Similarity=0.162 Sum_probs=94.1
Q ss_pred CccCHHHHHHHHHHHHHHhc-CCCcEEEEEecC--CCCCchHHHh---------cchHH-HHHHHHHHHHcCCCCEEEEE
Q 048389 377 GILFHESALKGAHFIELCTQ-RKIPLVFLQNIT--GFMVGSRSEA---------NGIAK-AGAKMVMAVSCAKVPKVTII 443 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~-~~iPlV~l~dt~--G~~~g~~~E~---------~g~~~-~~a~~~~a~~~a~vP~isvi 443 (566)
.+++.+....+...++.++. ..+-+|.|.-.+ -|..|.+-.. .+... ....++..+....+|+|+.|
T Consensus 35 Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 114 (273)
T PRK07396 35 NAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAMV 114 (273)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhhHHHHHHHHHHhCCCCEEEEE
Confidence 68999999999998887654 446677776544 2544443111 01111 11235567888999999999
Q ss_pred cCCCCchhhh-hhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHH
Q 048389 444 VGGSFGAGNY-AMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEA 515 (566)
Q Consensus 444 ~g~~~Ggg~~-am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 515 (566)
-|.++|||.- ++ ..|+++|-+++++++ +.+-+....+.+. +... ...++.
T Consensus 115 ~G~a~GgG~~lal-----acD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~-----------vG~~----~a~~l~-- 172 (273)
T PRK07396 115 AGYAIGGGHVLHL-----VCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARI-----------VGQK----KAREIW-- 172 (273)
T ss_pred CCEEehHHHHHHH-----hCCEEEeeCCcEEecccccccccCCchHHHHHHHH-----------hhHH----HHHHHH--
Confidence 9999999864 33 358888887766665 3222222222110 0000 001110
Q ss_pred HH-hhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 516 YE-KEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 516 ~~-~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
+. +..++..+.+.|+||+|+++.++.+......+.+..+
T Consensus 173 ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~ 212 (273)
T PRK07396 173 FLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQN 212 (273)
T ss_pred HhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhC
Confidence 11 1357788889999999999988776666655555543
No 125
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=96.74 E-value=0.1 Score=52.89 Aligned_cols=165 Identities=14% Similarity=0.087 Sum_probs=98.7
Q ss_pred EEEEEEeC-----CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecCC-CCCchHH-Hhc-------chHHHHHHHHHHHH
Q 048389 369 PVGIIGNN-----GILFHESALKGAHFIELCT-QRKIPLVFLQNITG-FMVGSRS-EAN-------GIAKAGAKMVMAVS 433 (566)
Q Consensus 369 ~Vgvvan~-----G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~G-~~~g~~~-E~~-------g~~~~~a~~~~a~~ 433 (566)
.|.+|.-| .+++.+..+.+.+.++..+ ...+-+|.|.-.++ |..|.+- |.. ........++..+.
T Consensus 15 ~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (251)
T PRK06023 15 GVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALA 94 (251)
T ss_pred cEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHHHH
Confidence 36655543 6789999999999888665 45677777765542 3333321 110 11223345677888
Q ss_pred cCCCCEEEEEcCCCCchhhh-hhccCCCCCCEEEEecCce-------eeccCHHHHHHHHhhhhhhhhhhcCCCCchHHH
Q 048389 434 CAKVPKVTIIVGGSFGAGNY-AMCGRAYSPNFMFLWPNAR-------ISVMGGAQAAGVLSQVEKDKKKKQGIEWTKQEE 505 (566)
Q Consensus 434 ~a~vP~isvi~g~~~Ggg~~-am~~~~~~~d~~~A~p~A~-------i~vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~~ 505 (566)
...+|+|+.|-|.++|||.. ++ ..|+++|-++++ +|..+.-+....+.+. +... .
T Consensus 95 ~~~kPvIAav~G~a~GgG~~la~-----acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-----------~g~~-~ 157 (251)
T PRK06023 95 EAEKPIVSGVDGLAIGIGTTIHL-----HCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRL-----------MGHQ-R 157 (251)
T ss_pred hCCCCEEEEeCCceecHHHHHHH-----hCCEEEEeCCCEecCcccccCCCCCchHHHHHHHH-----------HhHH-H
Confidence 99999999999999999864 33 358887766665 4544333333222211 0000 0
Q ss_pred HHHHHHHHHHHHhhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 506 EMFKAKVVEAYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 506 ~~~~~~l~~~~~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
.++-+.. -+..++..+.+.|+||+|+++.++-+...+..+.+...
T Consensus 158 --a~~l~l~--g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~ 202 (251)
T PRK06023 158 --AFALLAL--GEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAK 202 (251)
T ss_pred --HHHHHHh--CCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhC
Confidence 0011100 12357788889999999999887766655555555443
No 126
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=96.73 E-value=0.016 Score=59.27 Aligned_cols=160 Identities=14% Similarity=0.125 Sum_probs=90.1
Q ss_pred EEEEEecCccccccCChHHHHHHHHHHHHHHhC-C-CcEEEEEcC-----CCCCCCcccccc------Cc-hhhHHHHHH
Q 048389 128 CMFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-K-LPCIYLVDS-----GGAYLPKQAEVF------PD-KENFGRIFY 193 (566)
Q Consensus 128 v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~-lPlV~l~ds-----gGarl~~~~~~~------~~-~~~~~~i~~ 193 (566)
|+++-.|.--..-++...-.+.+..+++.+.+. . +-+|.|.-. .|+.+.+-.... .. ...+...+.
T Consensus 14 i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (266)
T PRK05981 14 VAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETAYH 93 (266)
T ss_pred EEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccchhHHHHHHHHH
Confidence 333333333345688898999999999887764 2 555666443 333332100000 00 001111111
Q ss_pred -HHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEec-----------cHHHHHhhhccc------cccc
Q 048389 194 -NQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLA-----------GPPLVKAATGEE------ISAE 255 (566)
Q Consensus 194 -~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~-----------GP~vv~~~~ge~------v~~e 255 (566)
....+.....|+|++|-|.|+|||..++..||++|+.+ ++.+.+. +...+....|.. ++.+
T Consensus 94 ~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~-~a~f~~~e~~lG~~p~~g~~~~l~~~vg~~~a~~l~l~g~ 172 (266)
T PRK05981 94 PFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCAR-SAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGE 172 (266)
T ss_pred HHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecC-CCEEechHhhcCCCCCccHHHHHHHHhHHHHHHHHHHhCC
Confidence 12234445789999999999999999988999988754 5665421 111122112211 1333
Q ss_pred CCCcccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 256 DLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 256 ~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
.+.+.+.+ ..|++|.+++++ +..+.+.++..-+
T Consensus 173 ~~~a~eA~--~~Glv~~vv~~~-~~~~~a~~~a~~l 205 (266)
T PRK05981 173 KLPAETAL--QWGLVNRVVDDA-ELMAEAMKLAHEL 205 (266)
T ss_pred CcCHHHHH--HcCCceEeeCHh-HHHHHHHHHHHHH
Confidence 44455555 489999999764 4566777666544
No 127
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=96.73 E-value=0.016 Score=58.84 Aligned_cols=148 Identities=18% Similarity=0.204 Sum_probs=85.0
Q ss_pred ECCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhCC-CcEEEEEcC-----CCCCCCcccccc-Cc-hhhHHHHHHH
Q 048389 123 VHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCK-LPCIYLVDS-----GGAYLPKQAEVF-PD-KENFGRIFYN 194 (566)
Q Consensus 123 I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~-lPlV~l~ds-----gGarl~~~~~~~-~~-~~~~~~i~~~ 194 (566)
++|.-+.|.-|++. . =+++....+.+..+++.+.+.. +-+|.|.-. +|+.+.+-.... .. ...+.+++.
T Consensus 7 ~~~~v~~itlnrp~-~-Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~- 83 (251)
T TIGR03189 7 RDGKLLRLRLARPK-A-NIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVI- 83 (251)
T ss_pred eeCCEEEEEeCCCC-c-CCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHH-
Confidence 44543345555564 3 5899999999999888877554 455666432 333443200000 00 011112222
Q ss_pred HHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------ccHH---HHHhhhccc------ccccCCC
Q 048389 195 QAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------AGPP---LVKAATGEE------ISAEDLG 258 (566)
Q Consensus 195 ~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~GP~---vv~~~~ge~------v~~e~lG 258 (566)
.+....+|+|+.|-|.|+|||..+...||++|+.+ ++++++ ..|. .+....|.. ++.+.+.
T Consensus 84 --~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~-~a~f~~pe~~~Gl~p~~~~~~l~~~vg~~~a~~l~ltg~~~~ 160 (251)
T TIGR03189 84 --AMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAP-DAKLGQPEIVLGVFAPAASCLLPERMGRVAAEDLLYSGRSID 160 (251)
T ss_pred --HHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcC-CCEEeCchhhcCCCCCchHHHHHHHhCHHHHHHHHHcCCCCC
Confidence 24445789999999999999999988999988754 565543 2111 111112211 1334455
Q ss_pred cccccccccCcceEEEcchh
Q 048389 259 GAAVHCKTSGVSDYFAQDEL 278 (566)
Q Consensus 259 ga~~h~~~sG~~d~v~~de~ 278 (566)
+.+.+ .-|++|.++++++
T Consensus 161 a~eA~--~~Glv~~v~~~~~ 178 (251)
T TIGR03189 161 GAEGA--RIGLANAVAEDPE 178 (251)
T ss_pred HHHHH--HCCCcceecCcHH
Confidence 55556 4899999997644
No 128
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=96.70 E-value=0.0053 Score=58.96 Aligned_cols=89 Identities=25% Similarity=0.232 Sum_probs=69.5
Q ss_pred ccCChHHHHHHHHHHHHHHhCCC-cEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEe---ccccc
Q 048389 140 GTYFPITIKKHLRAQEIAAQCKL-PCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVL---GSCTA 215 (566)
Q Consensus 140 Gs~g~~~~~K~~r~~~lA~~~~l-PlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~---G~~~G 215 (566)
|.+.+....-+.|.++.|.+.+. +++..+||+|..+.. .-.++..+ ....+|+++++. |.+.+
T Consensus 8 G~I~~~~~~~l~~~l~~A~~~~~~~i~l~inSPGG~v~~----------~~~I~~~i---~~~~~pvv~~v~p~g~~AaS 74 (172)
T cd07015 8 GQITSYTYDQFDRYITIAEQDNAEAIIIELDTPGGRADA----------AGNIVQRI---QQSKIPVIIYVYPPGASAAS 74 (172)
T ss_pred eEECHhHHHHHHHHHHHHhcCCCCeEEEEEECCCCCHHH----------HHHHHHHH---HhcCcCEEEEEecCCCeehh
Confidence 77888889999999999988764 688889999975521 12333332 223689999999 99999
Q ss_pred cccccccCCCeeEEEecceeEEeccHH
Q 048389 216 GGAYIPAMADESVMVKGNGTIFLAGPP 242 (566)
Q Consensus 216 G~ay~~a~~d~vi~v~~~a~i~~~GP~ 242 (566)
+|+++...||.++| .|++.++..+|-
T Consensus 75 ag~~I~~a~~~i~m-~p~s~iG~~~pi 100 (172)
T cd07015 75 AGTYIALGSHLIAM-APGTSIGACRPI 100 (172)
T ss_pred HHHHHHHhcCceEE-CCCCEEEEcccc
Confidence 99999888999766 678999999983
No 129
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=96.70 E-value=0.014 Score=59.29 Aligned_cols=154 Identities=17% Similarity=0.171 Sum_probs=90.4
Q ss_pred EEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcC-----CCCCCCccccccCc----hhhHHHHHHHHHHHc
Q 048389 130 FVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDS-----GGAYLPKQAEVFPD----KENFGRIFYNQAIMS 199 (566)
Q Consensus 130 v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~ds-----gGarl~~~~~~~~~----~~~~~~i~~~~a~ls 199 (566)
|.-|++. .--++.....+.+..+++.+.+. .+-+|.|.-. .|+.+.+-...... ...+.+++. .+.
T Consensus 18 i~lnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~---~l~ 93 (259)
T PRK06688 18 ITINRPD-KKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLR---AIA 93 (259)
T ss_pred EEecCcc-cccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHH---HHH
Confidence 3444443 44588999999999999877764 5666777543 33333210000000 111222332 344
Q ss_pred CCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------c----cHHHHHhhhccc------ccccCCCcccc
Q 048389 200 AEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------A----GPPLVKAATGEE------ISAEDLGGAAV 262 (566)
Q Consensus 200 ~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~----GP~vv~~~~ge~------v~~e~lGga~~ 262 (566)
....|+|++|-|.|+|||..+...||++|+. +++++++ . |...+....|.. ++.+.+.+.+.
T Consensus 94 ~~~kp~Iaav~G~a~GgG~~lal~cD~ria~-~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA 172 (259)
T PRK06688 94 ALPKPVVAAVNGPAVGVGVSLALACDLVYAS-ESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEA 172 (259)
T ss_pred cCCCCEEEEECCeeecHHHHHHHhCCEEEec-CCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHHHHHhCCccCHHHH
Confidence 4578999999999999999998899998875 4666544 1 111111112210 12233444445
Q ss_pred cccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 263 HCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 263 h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
+ ..|++|.++++ ++..+.++++...+
T Consensus 173 ~--~~Glv~~v~~~-~~l~~~a~~~a~~i 198 (259)
T PRK06688 173 L--RIGLVNRVVPA-AELDAEADAQAAKL 198 (259)
T ss_pred H--HcCCcceecCH-HHHHHHHHHHHHHH
Confidence 5 47999999975 45667777777655
No 130
>PRK05869 enoyl-CoA hydratase; Validated
Probab=96.70 E-value=0.021 Score=56.92 Aligned_cols=154 Identities=14% Similarity=0.143 Sum_probs=92.1
Q ss_pred EEEEecCccccccCChHHHHHHHHHHHHHHh-CCCcEEEEEcC-----CCCCCCccccc-cCc----hhhHHHHHHHHHH
Q 048389 129 MFVANDPTVKGGTYFPITIKKHLRAQEIAAQ-CKLPCIYLVDS-----GGAYLPKQAEV-FPD----KENFGRIFYNQAI 197 (566)
Q Consensus 129 ~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~-~~lPlV~l~ds-----gGarl~~~~~~-~~~----~~~~~~i~~~~a~ 197 (566)
.+.-|++. . =+++......+..+++.+.+ ..+-+|.|.-. +|+.+.+-... ... ...+.+++. +
T Consensus 20 ~itlnrp~-~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~---~ 94 (222)
T PRK05869 20 TLLLSRPP-T-NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVD---A 94 (222)
T ss_pred EEEECCCC-C-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHH---H
Confidence 34455555 3 47888888999888887664 55666766543 33333210000 000 001112232 3
Q ss_pred HcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------c----cHHHHHhhhccc------ccccCCCcc
Q 048389 198 MSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------A----GPPLVKAATGEE------ISAEDLGGA 260 (566)
Q Consensus 198 ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~----GP~vv~~~~ge~------v~~e~lGga 260 (566)
+....+|+|+.|-|.|+|||..+...||++|+. +++++++ . |...+...+|.. ++.+.+.+.
T Consensus 95 i~~~~kPvIAav~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~ 173 (222)
T PRK05869 95 VAAIPKPTVAAITGYALGAGLTLALAADWRVSG-DNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAE 173 (222)
T ss_pred HHhCCCCEEEEEcCEeecHHHHHHHhCCEEEec-CCCEEcCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHH
Confidence 444578999999999999999998999998875 4666544 1 112222233321 133445555
Q ss_pred cccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 261 AVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 261 ~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
+.. .-|++|.+++++ +..+.+.++...+
T Consensus 174 eA~--~~Glv~~vv~~~-~l~~~a~~~a~~i 201 (222)
T PRK05869 174 EAL--ALGLIDEMVAPD-DVYDAAAAWARRF 201 (222)
T ss_pred HHH--HCCCCCEeeCch-HHHHHHHHHHHHH
Confidence 555 479999999754 5777777777655
No 131
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=96.68 E-value=0.086 Score=53.63 Aligned_cols=142 Identities=13% Similarity=0.081 Sum_probs=84.8
Q ss_pred CccCHHHHHHHHHHHHHHhcCCCcEEEEEecC-CCCCchHHHh------cc-----hHHHHHHHHHHHHcCCCCEEEEEc
Q 048389 377 GILFHESALKGAHFIELCTQRKIPLVFLQNIT-GFMVGSRSEA------NG-----IAKAGAKMVMAVSCAKVPKVTIIV 444 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~~~iPlV~l~dt~-G~~~g~~~E~------~g-----~~~~~a~~~~a~~~a~vP~isvi~ 444 (566)
.+++.+....+.+.++.++ ..+-+|+|.-.+ -|..|.+-.. .+ ......+++..+....+|+|+.|-
T Consensus 26 Nal~~~~~~~L~~~l~~~~-~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 104 (255)
T PRK07112 26 NTINDRLIAECMDVLDRCE-HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVR 104 (255)
T ss_pred CCCCHHHHHHHHHHHHHhh-cCceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEe
Confidence 6789999999999888777 356677776533 2333321110 00 122234567788889999999999
Q ss_pred CCCCchhhhhhccCCCCCCEEEEecCceeeccC------HHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHHh
Q 048389 445 GGSFGAGNYAMCGRAYSPNFMFLWPNARISVMG------GAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEK 518 (566)
Q Consensus 445 g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~vmg------~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 518 (566)
|.++|||..-.+ .+|+++|.+++++++.. |......+.+ + +.... .. +-+.. -+
T Consensus 105 G~a~GgG~~lal----a~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~l~~-------~----vg~~~--a~-~l~l~--g~ 164 (255)
T PRK07112 105 GKVNAGGIGFVA----ASDIVIADETAPFSLSELLFGLIPACVLPFLIR-------R----IGTQK--AH-YMTLM--TQ 164 (255)
T ss_pred cEEEcchhHHHH----cCCEEEEcCCCEEeCchhhhccCcchhhHHHHH-------H----hCHHH--HH-HHHHh--CC
Confidence 999999865322 36888888887776621 2211111110 0 01100 00 11100 12
Q ss_pred hCCHHHHHhCcccceecCchh
Q 048389 519 EGNAYYSTARLWDDGIIDPAD 539 (566)
Q Consensus 519 ~~~~~~aa~~g~iD~II~p~~ 539 (566)
..++..+.+.|+||+|+++.+
T Consensus 165 ~~~a~eA~~~Glv~~vv~~~~ 185 (255)
T PRK07112 165 PVTAQQAFSWGLVDAYGANSD 185 (255)
T ss_pred cccHHHHHHcCCCceecCcHH
Confidence 257778889999999999766
No 132
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=96.66 E-value=0.098 Score=53.01 Aligned_cols=158 Identities=12% Similarity=0.100 Sum_probs=94.5
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC-CCCCchHHHh-----cchHHH-HHHHHHHHHcCCCCEEEEEcCCCC
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT-GFMVGSRSEA-----NGIAKA-GAKMVMAVSCAKVPKVTIIVGGSF 448 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~-G~~~g~~~E~-----~g~~~~-~a~~~~a~~~a~vP~isvi~g~~~ 448 (566)
.+++.+....+.+.++-++ ...+.+|.|.-.+ .|..|.+-.. .+.... ...++..+.....|+|+.|-|.|+
T Consensus 27 Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 106 (249)
T PRK07110 27 NAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLYSLALNCPIPVIAAMQGHAI 106 (249)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHHHHHHcCCCCEEEEecCcee
Confidence 5788888888888888665 4556777776543 3444442111 011000 135677888999999999999999
Q ss_pred chhhh-hhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHHhhC
Q 048389 449 GAGNY-AMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEKEG 520 (566)
Q Consensus 449 Ggg~~-am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 520 (566)
|||.. ++ .+|++++.+++++++ ..+-+....+.+. +.... .++-+.. -+..
T Consensus 107 GgG~~lal-----~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-----------~g~~~---a~~lllt--g~~~ 165 (249)
T PRK07110 107 GGGLVLGL-----YADIVVLSRESVYTANFMKYGFTPGMGATAILPEK-----------LGLAL---GQEMLLT--ARYY 165 (249)
T ss_pred chHHHHHH-----hCCEEEEeCCCEecCchhccCCCCCchHHHHHHHH-----------hCHHH---HHHHHHc--CCcc
Confidence 99864 44 358888887665543 3222222222210 00000 0000100 0124
Q ss_pred CHHHHHhCcccceecCchhhHHHHHHHHHHhhCCC
Q 048389 521 NAYYSTARLWDDGIIDPADTRKIIGFCISAALNRP 555 (566)
Q Consensus 521 ~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~~ 555 (566)
++..+.+.|++|.|+++.++.+......+.+..++
T Consensus 166 ~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~ 200 (249)
T PRK07110 166 RGAELKKRGVPFPVLPRAEVLEKALELARSLAEKP 200 (249)
T ss_pred CHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhCC
Confidence 67778899999999999887766666666555443
No 133
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=96.65 E-value=0.083 Score=53.98 Aligned_cols=157 Identities=13% Similarity=0.085 Sum_probs=90.9
Q ss_pred CccCH-HHHHHHHHHHHHHh-cCCCcEEEEEecC-CCCCchH-HHhc--------------chHH-HHHHHHHHHHcCCC
Q 048389 377 GILFH-ESALKGAHFIELCT-QRKIPLVFLQNIT-GFMVGSR-SEAN--------------GIAK-AGAKMVMAVSCAKV 437 (566)
Q Consensus 377 G~l~~-~~a~K~ar~i~l~~-~~~iPlV~l~dt~-G~~~g~~-~E~~--------------g~~~-~~a~~~~a~~~a~v 437 (566)
.+++. +..+.+.++++.++ ...+-+|.|.-.+ .|..|.+ .+.. .... ....++..+....+
T Consensus 25 Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 104 (266)
T PRK09245 25 NALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPADIRQGYRHGIQRIPLALYNLEV 104 (266)
T ss_pred cCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccchhHHHHHHHHHHHHHHHHHcCCC
Confidence 56774 67777888777665 4567777776433 2333332 1110 0111 13356677888999
Q ss_pred CEEEEEcCCCCchhhh-hhccCCCCCCEEEEecCceee-------ccCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHH
Q 048389 438 PKVTIIVGGSFGAGNY-AMCGRAYSPNFMFLWPNARIS-------VMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFK 509 (566)
Q Consensus 438 P~isvi~g~~~Ggg~~-am~~~~~~~d~~~A~p~A~i~-------vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (566)
|+|+.|-|.|+|||.- ++ .+|+++|.++++++ +...-+....+.+. +... ..
T Consensus 105 pvIaav~G~a~GgG~~lal-----acD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~-----------vG~~----~a 164 (266)
T PRK09245 105 PVIAAVNGPAIGAGCDLAC-----MCDIRIASETARFAESFVKLGLIPGDGGAWLLPRI-----------IGMA----RA 164 (266)
T ss_pred CEEEEECCEeecHHHHHHH-----hCCEEEecCCCEEcccccccCcCCCcchhhhHHHH-----------hhHH----HH
Confidence 9999999999999864 33 35888777666555 33322222222110 0000 00
Q ss_pred HHHHHHHHhhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 510 AKVVEAYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 510 ~~l~~~~~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
.++.= .-+..++..+.+.|+||.|+++.++.+......+.+...
T Consensus 165 ~~l~l-~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~ 208 (266)
T PRK09245 165 AEMAF-TGDAIDAATALEWGLVSRVVPADQLLPAARALAERIAAN 208 (266)
T ss_pred HHHHH-cCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhC
Confidence 11100 011257788889999999999988776666655555544
No 134
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=96.64 E-value=0.059 Score=54.34 Aligned_cols=158 Identities=11% Similarity=-0.024 Sum_probs=90.1
Q ss_pred CccCHHHHHHHHHHHHHHhcC-C-CcEEEEEecC-CCCCchHH-Hh----------cchHHHHHHHHHHHHcCCCCEEEE
Q 048389 377 GILFHESALKGAHFIELCTQR-K-IPLVFLQNIT-GFMVGSRS-EA----------NGIAKAGAKMVMAVSCAKVPKVTI 442 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~~-~-iPlV~l~dt~-G~~~g~~~-E~----------~g~~~~~a~~~~a~~~a~vP~isv 442 (566)
.+++.+....+.++++..+.. . ..+|++...+ -|..|.+- +. ....+..-+++.++.....|+|+.
T Consensus 21 Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 100 (239)
T PLN02267 21 HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAA 100 (239)
T ss_pred CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 468888888888888766543 3 3466665543 23333321 10 112223445677888999999999
Q ss_pred EcCCCCchhhhhhccCCCCCCEEEEec-C-------ceeeccCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHH
Q 048389 443 IVGGSFGAGNYAMCGRAYSPNFMFLWP-N-------ARISVMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVE 514 (566)
Q Consensus 443 i~g~~~Ggg~~am~~~~~~~d~~~A~p-~-------A~i~vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 514 (566)
|-|.|+|||..-.+ ..|+++|.+ + .++|+..|......+.+. +.... .. .++.
T Consensus 101 V~G~a~GgG~~lal----acD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~-----------vG~~~--a~-~~ll- 161 (239)
T PLN02267 101 VTGHASAAGFILAL----SHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAK-----------IGSPA--AR-RDVL- 161 (239)
T ss_pred ECCcchHHHHHHHH----HCCEEEecCCCCeEeccccccCCCCChHHHHHHHHH-----------cChHH--HH-HHHH-
Confidence 99999999874222 357777763 3 445554444443333211 11100 00 0111
Q ss_pred HHH-hhCCHHHHHhCcccceecCc-hhhHHHHHHHHHHhhCC
Q 048389 515 AYE-KEGNAYYSTARLWDDGIIDP-ADTRKIIGFCISAALNR 554 (566)
Q Consensus 515 ~~~-~~~~~~~aa~~g~iD~II~p-~~tR~~L~~~L~~~~~~ 554 (566)
+. +..++..+.+.|++|+|+++ .++.+...+..+.+..+
T Consensus 162 -ltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~ 202 (239)
T PLN02267 162 -LRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAAR 202 (239)
T ss_pred -HcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhc
Confidence 11 12467788899999999985 45655555555444444
No 135
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=96.64 E-value=0.0093 Score=57.18 Aligned_cols=94 Identities=22% Similarity=0.138 Sum_probs=64.2
Q ss_pred cccCChHHHHHHHHHHHHHHhC-CCcEEEE-EcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEecccccc
Q 048389 139 GGTYFPITIKKHLRAQEIAAQC-KLPCIYL-VDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAG 216 (566)
Q Consensus 139 gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l-~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG 216 (566)
++..+......+.+.++.|.+. ++-.|.| .+|+|..+.. ...+.+.+ ..+...+.|+|+.+-|.|.||
T Consensus 16 ~~~~~~~~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~-------~~~~~~~i---~~~~~~~kpVia~v~G~a~g~ 85 (177)
T cd07014 16 SDTQGNVSGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTA-------SEVIRAEL---AAARAAGKPVVASGGGNAASG 85 (177)
T ss_pred cCCCCCcCHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHH-------HHHHHHHH---HHHHhCCCCEEEEECCchhHH
Confidence 4445556678888888877665 4655444 6676653321 11122223 334445789999999999999
Q ss_pred ccccccCCCeeEEEecceeEEeccHHH
Q 048389 217 GAYIPAMADESVMVKGNGTIFLAGPPL 243 (566)
Q Consensus 217 ~ay~~a~~d~vi~v~~~a~i~~~GP~v 243 (566)
|.+++..||+++| .+++.+++.|...
T Consensus 86 g~~la~a~D~i~a-~~~a~~~~~G~~~ 111 (177)
T cd07014 86 GYWISTPANYIVA-NPSTLVGSIGIFG 111 (177)
T ss_pred HHHHHHhCCEEEE-CCCCeEEEechHh
Confidence 9999999999876 5789999988653
No 136
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=96.63 E-value=0.027 Score=57.37 Aligned_cols=163 Identities=17% Similarity=0.082 Sum_probs=91.5
Q ss_pred ECCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhCC-CcEEEEEcCC------CCCCCccccccCchhhHHHHHHHH
Q 048389 123 VHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCK-LPCIYLVDSG------GAYLPKQAEVFPDKENFGRIFYNQ 195 (566)
Q Consensus 123 I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~-lPlV~l~dsg------Garl~~~~~~~~~~~~~~~i~~~~ 195 (566)
++|.-..|.-|++..+. +++..-.+-+.++++.+.+.. +-+|.|.-++ |+.+.+-.. ..........+...
T Consensus 10 ~~~~v~~itlnrp~~~N-al~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~-~~~~~~~~~~~~~~ 87 (259)
T PRK06494 10 RKGHVTIVTLNRPEVMN-ALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAA-GGKRGWPESGFGGL 87 (259)
T ss_pred eECCEEEEEEcCccccC-CCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhh-cCcchhhhHHHHHH
Confidence 34443445556665544 788888888988888776544 5555554333 333321100 00000001112112
Q ss_pred HHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------c----cHHHHHhhhccc------ccccCCC
Q 048389 196 AIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------A----GPPLVKAATGEE------ISAEDLG 258 (566)
Q Consensus 196 a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~----GP~vv~~~~ge~------v~~e~lG 258 (566)
..+.....|+|+.|-|.|+|||..+...||++|+. +++++.+ . |...+...+|.. ++.+.+.
T Consensus 88 ~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~lll~g~~~~ 166 (259)
T PRK06494 88 TSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAA-ENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVT 166 (259)
T ss_pred HHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEe-CCCEEeCcccccCCCCCchHHHHHHHHcCHHHHHHHHHcCCcCC
Confidence 22223468999999999999999998899998875 4566544 1 111111112211 1223344
Q ss_pred cccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 259 GAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 259 ga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
+.+.+ .-|++|.++++ ++..+.++++...+
T Consensus 167 a~eA~--~~GLv~~vv~~-~~l~~~a~~~a~~l 196 (259)
T PRK06494 167 AREGL--ELGFVNEVVPA-GELLAAAERWADDI 196 (259)
T ss_pred HHHHH--HcCCCcEecCH-hHHHHHHHHHHHHH
Confidence 44455 47999999975 45666666666655
No 137
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=96.62 E-value=0.019 Score=58.51 Aligned_cols=164 Identities=16% Similarity=0.229 Sum_probs=91.8
Q ss_pred ECCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhCC-CcEEEEEc-----CCCCCCCcccccc--C--chhh-HHHH
Q 048389 123 VHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCK-LPCIYLVD-----SGGAYLPKQAEVF--P--DKEN-FGRI 191 (566)
Q Consensus 123 I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~-lPlV~l~d-----sgGarl~~~~~~~--~--~~~~-~~~i 191 (566)
++|.-..|.-|++. +.-+++..-.+.+..+++.+.+.. +-+|.|.- |+|+.+.+-.... . .... ....
T Consensus 9 ~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~ 87 (260)
T PRK07511 9 REGSTLVLTLSNPG-ARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGL 87 (260)
T ss_pred eECCEEEEEECCcc-cccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHH
Confidence 34444445555555 345788999999999999887653 45555543 3344442210000 0 0000 1111
Q ss_pred HHHHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------c----cHHHHHhhhccc------ccc
Q 048389 192 FYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------A----GPPLVKAATGEE------ISA 254 (566)
Q Consensus 192 ~~~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~----GP~vv~~~~ge~------v~~ 254 (566)
......+....+|+|++|-|.|+|||..+...||++|+.+ ++++.+ . +...+...+|.. ++.
T Consensus 88 ~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ltg 166 (260)
T PRK07511 88 HDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAAR-DAKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLLEG 166 (260)
T ss_pred HHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeC-CCEEeccccccCcCCCchHHHHHHHHhCHHHHHHHHHhC
Confidence 1111233445789999999999999999988999988755 565543 1 111122222211 123
Q ss_pred cCCCcccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 255 EDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 255 e~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
+.+.+.+.+ ..|++|.+++++ +..+.+.++..-+
T Consensus 167 ~~~~a~eA~--~~Glv~~vv~~~-~~~~~a~~~a~~l 200 (260)
T PRK07511 167 KPISAERLH--ALGVVNRLAEPG-QALAEALALADQL 200 (260)
T ss_pred CCCCHHHHH--HcCCccEeeCch-HHHHHHHHHHHHH
Confidence 344444444 589999999764 3556666665444
No 138
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=96.61 E-value=0.075 Score=55.29 Aligned_cols=155 Identities=12% Similarity=0.115 Sum_probs=91.2
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC-CCCCchHH-Hh------------------------c-chHHHHHHH
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT-GFMVGSRS-EA------------------------N-GIAKAGAKM 428 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~-G~~~g~~~-E~------------------------~-g~~~~~a~~ 428 (566)
.+++.+....+.+.++.++ ...+-+|.|.-.+ -|..|.+- +. . ........+
T Consensus 26 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (296)
T PRK08260 26 NAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPSDDGVRDGGGRV 105 (296)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccccccccccccchhHHHHHHHHHHH
Confidence 7889999999999888775 4566777775533 23232211 10 0 011112346
Q ss_pred HHHHHcCCCCEEEEEcCCCCchhhh-hhccCCCCCCEEEEecCceeeccCH------H-HHHHHHhhhhhhhhhhcCCCC
Q 048389 429 VMAVSCAKVPKVTIIVGGSFGAGNY-AMCGRAYSPNFMFLWPNARISVMGG------A-QAAGVLSQVEKDKKKKQGIEW 500 (566)
Q Consensus 429 ~~a~~~a~vP~isvi~g~~~Ggg~~-am~~~~~~~d~~~A~p~A~i~vmg~------e-~aa~i~~~~~~~~~~~~~~~~ 500 (566)
+..+.....|+|+.|-|.|+|||.. ++ .+|++||.+++++++-.. . +....+.+. +
T Consensus 106 ~~~l~~~pkPvIAav~G~a~GgG~~Lal-----acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~-----------v 169 (296)
T PRK08260 106 TLRIFDSLKPVIAAVNGPAVGVGATMTL-----AMDIRLASTAARFGFVFGRRGIVPEAASSWFLPRL-----------V 169 (296)
T ss_pred HHHHHhCCCCEEEEECCeeehHhHHHHH-----hCCEEEeeCCCEEecchhhcCcCCCcchhhhHHHh-----------h
Confidence 6778889999999999999999864 44 358998888877765221 1 111111100 0
Q ss_pred chHHHHHHHHHHHHHHHhhCCHHHHHhCcccceecCchhhHHHHHHHHHHhh
Q 048389 501 TKQEEEMFKAKVVEAYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAAL 552 (566)
Q Consensus 501 ~~~~~~~~~~~l~~~~~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~ 552 (566)
.... + .+-+.. -+..++..+.+.|+||+|+++.++.+......+.+.
T Consensus 170 G~~~--A-~~lllt--g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~ 216 (296)
T PRK08260 170 GLQT--A-LEWVYS--GRVFDAQEALDGGLVRSVHPPDELLPAARALAREIA 216 (296)
T ss_pred CHHH--H-HHHHHc--CCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHH
Confidence 0000 0 011100 112467778899999999998877655555544444
No 139
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=96.60 E-value=0.021 Score=60.08 Aligned_cols=153 Identities=15% Similarity=0.089 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhhhhccCCC
Q 048389 381 HESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAY 460 (566)
Q Consensus 381 ~~~a~K~ar~i~l~~~~~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~am~~~~~ 460 (566)
.+...+..+.++.. ..--+||..+||||-++.. ...+++.+..+...+ |+++.+-+-|..||||.-|
T Consensus 82 ~~~~~~~l~~~~~~-~~vk~vvL~inSPGG~v~a-------s~~i~~~l~~l~~~~-PV~v~v~~~AASGGY~IA~---- 148 (317)
T COG0616 82 GDDIEEILRAARAD-PSVKAVVLRINSPGGSVVA-------SELIARALKRLRAKK-PVVVSVGGYAASGGYYIAL---- 148 (317)
T ss_pred HHHHHHHHHHHhcC-CCCceEEEEEECcCCchhH-------HHHHHHHHHHHhhcC-CEEEEECCeecchhhhhhc----
Confidence 34444333333332 3456899999999976522 223677788888888 9999888999999998644
Q ss_pred CCCEEEEecCceeeccCHHHH----HHHHhhhhhh-------hhhh---cCCCCchHHHHHHHHHHHHHHHhhC------
Q 048389 461 SPNFMFLWPNARISVMGGAQA----AGVLSQVEKD-------KKKK---QGIEWTKQEEEMFKAKVVEAYEKEG------ 520 (566)
Q Consensus 461 ~~d~~~A~p~A~i~vmg~e~a----a~i~~~~~~~-------~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~------ 520 (566)
.+|-+||-|++.+|-+|+-.. ...+.+.-.+ ..+. .-.++++++.+.+++.+.+.|+...
T Consensus 149 aAd~I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~y~~F~~~V~~~ 228 (317)
T COG0616 149 AADKIVADPSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDETYDEFVDKVAEG 228 (317)
T ss_pred cCCEEEecCCceeeeceeEEecCCHHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 479999999999987776432 2222111000 0011 1123456666666666666555321
Q ss_pred -----------------CHHHHHhCcccceecCchhhHHHHHH
Q 048389 521 -----------------NAYYSTARLWDDGIIDPADTRKIIGF 546 (566)
Q Consensus 521 -----------------~~~~aa~~g~iD~II~p~~tR~~L~~ 546 (566)
+...+.+.|.||++-+-.+....+..
T Consensus 229 R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~~~ 271 (317)
T COG0616 229 RGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAE 271 (317)
T ss_pred CCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHHHHHHH
Confidence 23335688899999886555444433
No 140
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=96.59 E-value=0.019 Score=58.45 Aligned_cols=163 Identities=15% Similarity=0.185 Sum_probs=91.9
Q ss_pred CCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhCCCcEEEEEcC-----CCCCCCccccc----cCchh-hHHHHHH
Q 048389 124 HGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDS-----GGAYLPKQAEV----FPDKE-NFGRIFY 193 (566)
Q Consensus 124 ~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~lPlV~l~ds-----gGarl~~~~~~----~~~~~-~~~~i~~ 193 (566)
+|.-..|.-|++.. .-+++....+.+..+++.+....+.+|.|.-+ +|+.+.+-... ..... .+...+.
T Consensus 11 ~~~v~~itlnrp~~-~Nal~~~~~~~l~~~~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (262)
T PRK08140 11 EAGVATLTLNRPDK-LNSFTREMHRELREALDQVEDDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYN 89 (262)
T ss_pred ECCEEEEEecCCcc-cCCCCHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHH
Confidence 34333344455443 34788888888888888877555666776543 33333211000 00000 0111111
Q ss_pred -HHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------c----cHHHHHhhhccc------cccc
Q 048389 194 -NQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------A----GPPLVKAATGEE------ISAE 255 (566)
Q Consensus 194 -~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~----GP~vv~~~~ge~------v~~e 255 (566)
....+....+|+|+.|-|.|+|||..++..||++|+.+ ++++++ . |...+....|.. ++.+
T Consensus 90 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~-~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~ 168 (262)
T PRK08140 90 PLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAAR-SASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGE 168 (262)
T ss_pred HHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecC-CCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCC
Confidence 11234445789999999999999999989999988764 565532 1 111122222211 1334
Q ss_pred CCCcccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 256 DLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 256 ~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
.+.+.+.+ ..|++|.+++++ +..+.+.++...+
T Consensus 169 ~~~a~eA~--~~Glv~~vv~~~-~l~~~a~~~a~~i 201 (262)
T PRK08140 169 KLSAEQAE--QWGLIWRVVDDA-ALADEAQQLAAHL 201 (262)
T ss_pred CcCHHHHH--HcCCccEeeChH-HHHHHHHHHHHHH
Confidence 44455556 489999999764 4666777666655
No 141
>PRK08321 naphthoate synthase; Validated
Probab=96.58 E-value=0.092 Score=54.86 Aligned_cols=157 Identities=9% Similarity=0.050 Sum_probs=94.2
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC--------CCCCchHHHhc----------------chHH----HHHH
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT--------GFMVGSRSEAN----------------GIAK----AGAK 427 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~--------G~~~g~~~E~~----------------g~~~----~~a~ 427 (566)
.+++++....+.++++.++ ...+-+|.|.-.+ .|..|.+-... ...+ ..-.
T Consensus 47 Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (302)
T PRK08321 47 NAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHILE 126 (302)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccccchhhhHHHHHHHHH
Confidence 6799999999998888765 4566777776432 24444431110 0000 1112
Q ss_pred HHHHHHcCCCCEEEEEcCCCCchhhh-hhccCCCCCCEEEEe-cCceeecc-------CHHHHHHHHhhhhhhhhhhcCC
Q 048389 428 MVMAVSCAKVPKVTIIVGGSFGAGNY-AMCGRAYSPNFMFLW-PNARISVM-------GGAQAAGVLSQVEKDKKKKQGI 498 (566)
Q Consensus 428 ~~~a~~~a~vP~isvi~g~~~Ggg~~-am~~~~~~~d~~~A~-p~A~i~vm-------g~e~aa~i~~~~~~~~~~~~~~ 498 (566)
+...+.....|+|+.|-|.|+|||.- +++ .|+++|. +++++++. .+-+....+.+.
T Consensus 127 ~~~~l~~~pkP~IAaV~G~a~GgG~~lala-----cD~ria~~~~a~f~~pe~~~Gl~p~~~~~~~L~r~---------- 191 (302)
T PRK08321 127 VQRLIRFMPKVVIAVVPGWAAGGGHSLHVV-----CDLTLASREHARFKQTDADVGSFDGGYGSAYLARQ---------- 191 (302)
T ss_pred HHHHHHcCCCCEEEEEcCeeehHHHHHHHh-----CCEEEEecCCCEEECCccccccCCCchHHHHHHHH----------
Confidence 44567788999999999999999864 332 5888887 57776653 222222222110
Q ss_pred CCchHHHHHHHHHHHHHHH-hhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCCC
Q 048389 499 EWTKQEEEMFKAKVVEAYE-KEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNRP 555 (566)
Q Consensus 499 ~~~~~~~~~~~~~l~~~~~-~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~~ 555 (566)
+.... + .++. +. +..++..+.+.|+||.|+++.++.+......+.+..++
T Consensus 192 -vG~~~--A--~~l~--ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~ 242 (302)
T PRK08321 192 -VGQKF--A--REIF--FLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKS 242 (302)
T ss_pred -hCHHH--H--HHHH--HcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCC
Confidence 00000 0 1110 11 12477788899999999999888877777666666543
No 142
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=96.56 E-value=0.03 Score=57.19 Aligned_cols=154 Identities=17% Similarity=0.154 Sum_probs=84.1
Q ss_pred EEEecCccccccCChHHHHHHHHHHHHHHhCC-CcEEEEEcC-----CCCCCCccccccC----ch-hhHHHHHHHHHHH
Q 048389 130 FVANDPTVKGGTYFPITIKKHLRAQEIAAQCK-LPCIYLVDS-----GGAYLPKQAEVFP----DK-ENFGRIFYNQAIM 198 (566)
Q Consensus 130 v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~-lPlV~l~ds-----gGarl~~~~~~~~----~~-~~~~~i~~~~a~l 198 (566)
|.-|.+.. -=++.....+.+..+++.+.+.. +-+|.|.-+ +|+.+.+-..... .. .....+......+
T Consensus 18 itlnrp~~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l 96 (262)
T PRK07468 18 LTLNRPEK-HNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKAL 96 (262)
T ss_pred EEEcCccc-ccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHH
Confidence 34444443 34899999999999998776543 455555442 3333321000000 00 0011111112234
Q ss_pred cCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------c----cHHHHHhhhccc------ccccCCCccc
Q 048389 199 SAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------A----GPPLVKAATGEE------ISAEDLGGAA 261 (566)
Q Consensus 199 s~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~----GP~vv~~~~ge~------v~~e~lGga~ 261 (566)
.....|+|++|-|.|+|||..+...||++|+.+ ++++.+ . |+..... +|.. ++.+.+.+.+
T Consensus 97 ~~~~kPvIaav~G~a~GgG~~lala~D~ria~~-~a~f~~pe~~~Gl~p~~g~~~~~~~-vG~~~a~~lll~g~~~~a~e 174 (262)
T PRK07468 97 NDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVS-GARFGLTETRLGLIPATISPYVVAR-MGEANARRVFMSARLFDAEE 174 (262)
T ss_pred HcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeC-CCEEeCchhccCCCcccchhhHHhh-ccHHHHHHHHHhCCccCHHH
Confidence 445789999999999999999988899988764 565432 1 1111111 2211 1223344444
Q ss_pred ccccccCcceEEEcchhHHHHHHHHHHH
Q 048389 262 VHCKTSGVSDYFAQDELHGLSLGRNIIK 289 (566)
Q Consensus 262 ~h~~~sG~~d~v~~de~~a~~~~r~~ls 289 (566)
.+ .-|++|.+++++ +..+.+.++..
T Consensus 175 A~--~~Glv~~v~~~~-~l~~~~~~~a~ 199 (262)
T PRK07468 175 AV--RLGLLSRVVPAE-RLDAAVEAEVT 199 (262)
T ss_pred HH--HcCCcceecCHH-HHHHHHHHHHH
Confidence 55 489999999765 33444444433
No 143
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=96.56 E-value=0.004 Score=58.64 Aligned_cols=88 Identities=16% Similarity=0.103 Sum_probs=64.8
Q ss_pred ccCCh---HHHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEecccccc
Q 048389 140 GTYFP---ITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAG 216 (566)
Q Consensus 140 Gs~g~---~~~~K~~r~~~lA~~~~lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG 216 (566)
|.+.. ..+..+.+.++.+.+. -|++.+++|+|..+-. .-.++..+.. ...|+++++.|.|.|+
T Consensus 7 g~I~~~~~~~~~~~~~~l~~~~~~-~~i~l~inspGG~~~~----------~~~i~~~i~~---~~~pvi~~v~g~a~s~ 72 (160)
T cd07016 7 GDIGSDWGVTAKEFKDALDALGDD-SDITVRINSPGGDVFA----------GLAIYNALKR---HKGKVTVKIDGLAASA 72 (160)
T ss_pred eEeCCCcccCHHHHHHHHHhccCC-CCEEEEEECCCCCHHH----------HHHHHHHHHh---cCCCEEEEEcchHHhH
Confidence 55555 5778888888877666 7999999999975411 1233433322 3689999999999999
Q ss_pred ccccccCCCeeEEEecceeEEeccHH
Q 048389 217 GAYIPAMADESVMVKGNGTIFLAGPP 242 (566)
Q Consensus 217 ~ay~~a~~d~vi~v~~~a~i~~~GP~ 242 (566)
|++++..||++++ .+++.+++..|.
T Consensus 73 g~~ia~a~d~~~~-~~~a~~~~~~~~ 97 (160)
T cd07016 73 ASVIAMAGDEVEM-PPNAMLMIHNPS 97 (160)
T ss_pred HHHHHhcCCeEEE-CCCcEEEEECCc
Confidence 9999999999776 567888876653
No 144
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=96.55 E-value=0.012 Score=59.90 Aligned_cols=162 Identities=16% Similarity=0.174 Sum_probs=89.4
Q ss_pred ECCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhCCCcEEEEEcCC-----CCCCCccccccCchhhHHHHHHH---
Q 048389 123 VHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSG-----GAYLPKQAEVFPDKENFGRIFYN--- 194 (566)
Q Consensus 123 I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~lPlV~l~dsg-----Garl~~~~~~~~~~~~~~~i~~~--- 194 (566)
++|.-+.+.-|.+. ..-+++....+.+..+++.+....+-+|.|.-.+ |+.+.+-.. ......+.+.+..
T Consensus 12 ~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~-~~~~~~~~~~~~~~~~ 89 (260)
T PRK07659 12 YEGRVATIMLNRPE-ALNALDEPMLKELLQALKEVAESSAHIVVLRGNGRGFSAGGDIKMMLS-SNDESKFDGVMNTISE 89 (260)
T ss_pred eeCCEEEEEeCCcc-cccCCCHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccccCHHHHhh-ccCchhHHHHHHHHHH
Confidence 34433334444443 4568888999999999988854566666665433 333321000 0000111111111
Q ss_pred -HHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------c----cHHHHHhhhccc------ccccC
Q 048389 195 -QAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------A----GPPLVKAATGEE------ISAED 256 (566)
Q Consensus 195 -~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~----GP~vv~~~~ge~------v~~e~ 256 (566)
...+....+|+|+.|-|.|+|||..+...||++|+. +++++++ . |...+....|.. ++.+.
T Consensus 90 ~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l~ltg~~ 168 (260)
T PRK07659 90 IVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIAD-ISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKK 168 (260)
T ss_pred HHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEc-CCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHHHHhCCc
Confidence 112334478999999999999999998889998875 4565443 1 111122222211 12334
Q ss_pred CCcccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 257 LGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 257 lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
+.+.+.+ .-|++|.++ + .+..+.++++...+
T Consensus 169 ~~a~eA~--~~Glv~~vv-~-~~~~~~a~~~a~~l 199 (260)
T PRK07659 169 LSATEAL--DLGLIDEVI-G-GDFQTAAKQKISEW 199 (260)
T ss_pred cCHHHHH--HcCChHHHh-h-hHHHHHHHHHHHHH
Confidence 4444555 479999998 3 33445555555544
No 145
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=96.52 E-value=0.032 Score=56.82 Aligned_cols=103 Identities=19% Similarity=0.189 Sum_probs=63.0
Q ss_pred EEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcCCC-----CCCCccccc--cCc------hhhHHHHHHHHH
Q 048389 131 VANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDSGG-----AYLPKQAEV--FPD------KENFGRIFYNQA 196 (566)
Q Consensus 131 ~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~dsgG-----arl~~~~~~--~~~------~~~~~~i~~~~a 196 (566)
.-|.+. .--++.......+.++++.+.+. .+-+|.|.-+|+ +.+.+-... -+. ...+.+++.
T Consensus 20 ~lnrp~-~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--- 95 (260)
T PRK07827 20 TLDSPH-NRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLR--- 95 (260)
T ss_pred EEcCcc-ccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHHHHHHHHHHHHH---
Confidence 334443 44588899999999988877754 455566644332 223210000 000 011122232
Q ss_pred HHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe
Q 048389 197 IMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL 238 (566)
Q Consensus 197 ~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~ 238 (566)
.+....+|+|+.|-|+|+|||..+...||++|+. +++.+++
T Consensus 96 ~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~-~~a~f~~ 136 (260)
T PRK07827 96 AIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAG-PESTFAL 136 (260)
T ss_pred HHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEc-CCCEEeC
Confidence 2334578999999999999999998899999876 4566544
No 146
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=96.52 E-value=0.042 Score=56.25 Aligned_cols=157 Identities=18% Similarity=0.164 Sum_probs=89.4
Q ss_pred EEEecCccccccCChHHHHHHHHHHHHHHhCC-CcEEEEEcC-----CCCCCCcc----c-cccCchhhHHHHHHHHHHH
Q 048389 130 FVANDPTVKGGTYFPITIKKHLRAQEIAAQCK-LPCIYLVDS-----GGAYLPKQ----A-EVFPDKENFGRIFYNQAIM 198 (566)
Q Consensus 130 v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~-lPlV~l~ds-----gGarl~~~----~-~~~~~~~~~~~i~~~~a~l 198 (566)
|.-|.+... =++...-...+.++++.+.... +-+|.|.-. +|+.+.+- + +..........+......+
T Consensus 19 itlnrp~~~-Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (265)
T PRK05674 19 LWLSRADKN-NAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNL 97 (265)
T ss_pred EEecCcccc-cCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHH
Confidence 334445433 3788888888888888776554 445555443 23333210 0 0000000011111112234
Q ss_pred cCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------c---cHHHHHhhhccc------ccccCCCcccc
Q 048389 199 SAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------A---GPPLVKAATGEE------ISAEDLGGAAV 262 (566)
Q Consensus 199 s~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~---GP~vv~~~~ge~------v~~e~lGga~~ 262 (566)
.....|+|+.|-|.|+|||..+...||++|+. +++++++ . |...+-..+|.. ++.+.+.+.+.
T Consensus 98 ~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~-~~a~f~~pe~~~Gi~p~~~~~~l~~~vG~~~a~~l~ltg~~~~a~eA 176 (265)
T PRK05674 98 YRLKIPTLAVVQGAAFGGALGLISCCDMAIGA-DDAQFCLSEVRIGLAPAVISPFVVKAIGERAARRYALTAERFDGRRA 176 (265)
T ss_pred HcCCCCEEEEEcCEEEechhhHhhhcCEEEEe-CCCEEeCcccccCCCcchhHHHHHHHhCHHHHHHHHHhCcccCHHHH
Confidence 44578999999999999999999999998875 4565543 2 111121122311 13344555555
Q ss_pred cccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 263 HCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 263 h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
+ .-|++|.++++ .+..+.+.++..-+
T Consensus 177 ~--~~Glv~~vv~~-~~l~~~a~~~a~~l 202 (265)
T PRK05674 177 R--ELGLLAESYPA-AELEAQVEAWIANL 202 (265)
T ss_pred H--HCCCcceecCH-HHHHHHHHHHHHHH
Confidence 6 47999999985 45667777776655
No 147
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=96.51 E-value=0.11 Score=52.74 Aligned_cols=156 Identities=12% Similarity=-0.006 Sum_probs=88.5
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC-CCCCchHH-Hh-----cc---hHHHHHHHH-HHHHcCCCCEEEEEc
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT-GFMVGSRS-EA-----NG---IAKAGAKMV-MAVSCAKVPKVTIIV 444 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~-G~~~g~~~-E~-----~g---~~~~~a~~~-~a~~~a~vP~isvi~ 444 (566)
.+++.+....+.+.++.++ ..++-+|.|.-.+ .|..|.+- +. .. ......+.+ ..+....+|+|+.|-
T Consensus 21 Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 100 (255)
T PRK06563 21 NAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRRLSKPLVVAVQ 100 (255)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhcCCCCEEEEEc
Confidence 6799999999999887654 4556677776544 23333321 10 01 111112222 346778999999999
Q ss_pred CCCCchhhhhhccCCCCCCEEEEecCceeecc------CHH-HHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHH
Q 048389 445 GGSFGAGNYAMCGRAYSPNFMFLWPNARISVM------GGA-QAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYE 517 (566)
Q Consensus 445 g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~vm------g~e-~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 517 (566)
|.|+|||..-.+ ..|+++|.++++++.- .|. +....+.+. +.... + .++. ..-
T Consensus 101 G~a~GgG~~lal----~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-----------vG~~~--a--~~l~-ltg 160 (255)
T PRK06563 101 GYCLTLGIELML----AADIVVAADNTRFAQLEVQRGILPFGGATLRFPQA-----------AGWGN--A--MRYL-LTG 160 (255)
T ss_pred CeeecHHHHHHH----hCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHH-----------hhHHH--H--HHHH-HcC
Confidence 999999875322 3589988888776651 122 111111110 00000 0 1110 001
Q ss_pred hhCCHHHHHhCcccceecCchhhHHHHHHHHHHhh
Q 048389 518 KEGNAYYSTARLWDDGIIDPADTRKIIGFCISAAL 552 (566)
Q Consensus 518 ~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~ 552 (566)
+..++..+.+.|+||+|+++.++.+......+.+.
T Consensus 161 ~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la 195 (255)
T PRK06563 161 DEFDAQEALRLGLVQEVVPPGEQLERAIELAERIA 195 (255)
T ss_pred CCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHH
Confidence 12477788899999999998776555554444444
No 148
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=96.50 E-value=0.019 Score=58.44 Aligned_cols=157 Identities=13% Similarity=0.156 Sum_probs=86.9
Q ss_pred EEEecCccccccCChHHHHHHHHHHHHHHhCC-CcEEEEEcCC------CCCCCccccccC-chhhHHHHHH-HHHHHcC
Q 048389 130 FVANDPTVKGGTYFPITIKKHLRAQEIAAQCK-LPCIYLVDSG------GAYLPKQAEVFP-DKENFGRIFY-NQAIMSA 200 (566)
Q Consensus 130 v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~-lPlV~l~dsg------Garl~~~~~~~~-~~~~~~~i~~-~~a~ls~ 200 (566)
|.-|.+. ..-++.....+-+.++++.+.... +-+|.|.-++ |+.+.+-..... ....+...+. ....+..
T Consensus 17 itlnrp~-~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (260)
T PRK05809 17 VTINRPK-ALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLEN 95 (260)
T ss_pred EEECCCc-ccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHc
Confidence 3344444 445788999999999988776543 4455554323 222211000000 0000111111 1123444
Q ss_pred CCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------c----cHHHHHhhhccc------ccccCCCccccc
Q 048389 201 EGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------A----GPPLVKAATGEE------ISAEDLGGAAVH 263 (566)
Q Consensus 201 ~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~----GP~vv~~~~ge~------v~~e~lGga~~h 263 (566)
..+|+|++|-|.|+|||..++..||++|+. +++++++ . |...+....|.. ++.+.+.+.+.+
T Consensus 96 ~~kPvIaav~G~a~GgG~~lal~cD~~va~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~ 174 (260)
T PRK05809 96 LDKPVIAAINGFALGGGCELSMACDIRIAS-EKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINAEEAL 174 (260)
T ss_pred CCCCEEEEEcCeeecHHHHHHHhCCEEEee-CCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHH
Confidence 578999999999999999998899998875 4565543 1 111122222311 123344444455
Q ss_pred ccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 264 CKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 264 ~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
.-|++|.++++ .+..+.+.++...|
T Consensus 175 --~~Glv~~vv~~-~~l~~~a~~~a~~l 199 (260)
T PRK05809 175 --RIGLVNKVVEP-EKLMEEAKALANKI 199 (260)
T ss_pred --HcCCCCcccCh-HHHHHHHHHHHHHH
Confidence 47999999975 45666666666544
No 149
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=96.50 E-value=0.097 Score=53.56 Aligned_cols=156 Identities=10% Similarity=0.068 Sum_probs=93.3
Q ss_pred CccCHHHHHHHHHHHHHHhc-CCCcEEEEEecC-CCCCchHHHh---------cc---hHHHHHHHHHHHHcCCCCEEEE
Q 048389 377 GILFHESALKGAHFIELCTQ-RKIPLVFLQNIT-GFMVGSRSEA---------NG---IAKAGAKMVMAVSCAKVPKVTI 442 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~-~~iPlV~l~dt~-G~~~g~~~E~---------~g---~~~~~a~~~~a~~~a~vP~isv 442 (566)
.+++.+....+.++++.++. ..+-+|.|.-.+ .|..|.+-.. .. ..+...+++..+.....|+|+.
T Consensus 28 Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 107 (265)
T PRK05674 28 NAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLAV 107 (265)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEEE
Confidence 67888999989998887653 445567775543 2333332110 00 1123346777888999999999
Q ss_pred EcCCCCchhhh-hhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHH
Q 048389 443 IVGGSFGAGNY-AMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVE 514 (566)
Q Consensus 443 i~g~~~Ggg~~-am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 514 (566)
|-|.|+|||.. ++ .+|+++|.+++++++ .+.-+.......+ ... ...++.
T Consensus 108 V~G~a~GgG~~lal-----~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~~l~~~v------------G~~----~a~~l~- 165 (265)
T PRK05674 108 VQGAAFGGALGLIS-----CCDMAIGADDAQFCLSEVRIGLAPAVISPFVVKAI------------GER----AARRYA- 165 (265)
T ss_pred EcCEEEechhhHhh-----hcCEEEEeCCCEEeCcccccCCCcchhHHHHHHHh------------CHH----HHHHHH-
Confidence 99999999864 33 358887776665554 3322222211111 000 001110
Q ss_pred HHHhhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 515 AYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 515 ~~~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
..-+..++..+.+.|+||+|+++.++.+......+.+...
T Consensus 166 ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 205 (265)
T PRK05674 166 LTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLN 205 (265)
T ss_pred HhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhc
Confidence 0011247777889999999999988877776666655543
No 150
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=96.49 E-value=0.033 Score=57.34 Aligned_cols=160 Identities=16% Similarity=0.154 Sum_probs=88.8
Q ss_pred EEEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcCC-----CCCCCccccccC--c---hhhHHHHHH-HH
Q 048389 128 CMFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDSG-----GAYLPKQAEVFP--D---KENFGRIFY-NQ 195 (566)
Q Consensus 128 v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~dsg-----Garl~~~~~~~~--~---~~~~~~i~~-~~ 195 (566)
|+++-.|..-+.-++...-..-+..+++.+... .+-+|.|.-.| |+.+.+-..... . .....+.+. ..
T Consensus 18 va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (275)
T PRK09120 18 IAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWW 97 (275)
T ss_pred EEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHH
Confidence 444444433344578888888899998877654 45566665433 333321000000 0 000000111 12
Q ss_pred HHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------c----cHHHHHhhhccc------ccccCCC
Q 048389 196 AIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------A----GPPLVKAATGEE------ISAEDLG 258 (566)
Q Consensus 196 a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~----GP~vv~~~~ge~------v~~e~lG 258 (566)
..+....+|+|+.|-|.|+|||..+...||++|+. +++++.+ . +...+...+|.. ++.+.+.
T Consensus 98 ~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~llltg~~~~ 176 (275)
T PRK09120 98 RRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAA-DEAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFT 176 (275)
T ss_pred HHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEe-CCcEecCCccccCCCCCcchHHHHHHHcCHHHHHHHHhcCCccC
Confidence 23444578999999999999999998899998875 4676644 1 111122222211 1223333
Q ss_pred cccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 259 GAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 259 ga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
+.+.+ .-|++|.+++++ +..+.+.++..-|
T Consensus 177 A~eA~--~~Glv~~vv~~~-~l~~~a~~~a~~l 206 (275)
T PRK09120 177 GRKAA--EMGLVNESVPLA-QLRARTRELAAKL 206 (275)
T ss_pred HHHHH--HcCCcceecCHH-HHHHHHHHHHHHH
Confidence 44445 589999999754 4556666665544
No 151
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=96.49 E-value=0.04 Score=56.09 Aligned_cols=154 Identities=19% Similarity=0.222 Sum_probs=91.2
Q ss_pred CCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhCCCcEEEEEcCC-----CCCCCccccccC-c----hhhHHHHHH
Q 048389 124 HGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSG-----GAYLPKQAEVFP-D----KENFGRIFY 193 (566)
Q Consensus 124 ~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~lPlV~l~dsg-----Garl~~~~~~~~-~----~~~~~~i~~ 193 (566)
+|.-+.|.-|++. +.=++.......+.++++.+. ..+-+|.|.-.| |+.+.+-...-. . ...+.+++.
T Consensus 9 ~~~v~~itlnrp~-~~Nal~~~~~~~l~~al~~~~-~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
T PRK08150 9 DGGVATIGLNRPA-KRNALNDGLIAALRAAFARLP-EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFD 86 (255)
T ss_pred eCCEEEEEEcCCc-cccCCCHHHHHHHHHHHHHhh-cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHH
Confidence 3433334445544 334788999999999998876 566666665432 333321000000 0 011112222
Q ss_pred HHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEec-----------cHHHHHh-----------hhccc
Q 048389 194 NQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLA-----------GPPLVKA-----------ATGEE 251 (566)
Q Consensus 194 ~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~-----------GP~vv~~-----------~~ge~ 251 (566)
.+.....|+|+.|-|.|+|||..+...||++|+. +++++++. |...+.. .+|+.
T Consensus 87 ---~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ltg~~ 162 (255)
T PRK08150 87 ---KIQYGRVPVIAALHGAVVGGGLELASAAHIRVAD-ESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRV 162 (255)
T ss_pred ---HHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEe-CCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCc
Confidence 3444578999999999999999998889998876 46766541 1111111 23444
Q ss_pred ccccCCCcccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 252 ISAEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 252 v~~e~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
++ +.+.+ .-|++|.+++++ +..+.++++...+
T Consensus 163 ~~-----a~eA~--~~Glv~~vv~~~-~l~~~a~~~a~~l 194 (255)
T PRK08150 163 YD-----AQEGE--RLGLAQYLVPAG-EALDKAMELARRI 194 (255)
T ss_pred CC-----HHHHH--HcCCccEeeCch-HHHHHHHHHHHHH
Confidence 44 44444 489999999864 5667776666555
No 152
>PRK08321 naphthoate synthase; Validated
Probab=96.48 E-value=0.037 Score=57.83 Aligned_cols=164 Identities=15% Similarity=0.232 Sum_probs=93.8
Q ss_pred CCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEc------------CCCCCCCcccc---ccC----
Q 048389 124 HGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVD------------SGGAYLPKQAE---VFP---- 183 (566)
Q Consensus 124 ~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~d------------sgGarl~~~~~---~~~---- 183 (566)
+|.-+.|--|++. ..-+++.....-+..+++.+... .+-+|.|.- |+|+.+.+-.+ .+.
T Consensus 32 ~~~va~itlnrP~-~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~ 110 (302)
T PRK08321 32 DQGTVRIAFDRPE-VRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDE 110 (302)
T ss_pred CCCEEEEEeCCcc-cccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhcccccccccccc
Confidence 4443445555554 34588898889999998887654 455666642 34444421000 000
Q ss_pred ----chhhHHHH-HH-HHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEec-----------cHHHHHh
Q 048389 184 ----DKENFGRI-FY-NQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLA-----------GPPLVKA 246 (566)
Q Consensus 184 ----~~~~~~~i-~~-~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~-----------GP~vv~~ 246 (566)
........ +. ....+.....|+|++|-|.|+|||..+...||++|+.++++++.+. |...+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~~~~~L~r 190 (302)
T PRK08321 111 ADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLAR 190 (302)
T ss_pred ccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCchHHHHHHH
Confidence 00001110 01 1122444568999999999999999998899999886445666542 1111222
Q ss_pred hhccc------ccccCCCcccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 247 ATGEE------ISAEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 247 ~~ge~------v~~e~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
..|.. ++.+.+.+.+.+ .-|++|.++++ ++..+.+.++..-|
T Consensus 191 ~vG~~~A~~l~ltG~~~~A~eA~--~~GLv~~vv~~-~~l~~~a~~~a~~l 238 (302)
T PRK08321 191 QVGQKFAREIFFLGRTYSAEEAH--DMGAVNAVVPH-AELETEALEWAREI 238 (302)
T ss_pred HhCHHHHHHHHHcCCccCHHHHH--HCCCceEeeCH-HHHHHHHHHHHHHH
Confidence 22321 133445555556 48999999975 44666666666554
No 153
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=96.48 E-value=0.1 Score=53.28 Aligned_cols=157 Identities=11% Similarity=0.094 Sum_probs=95.2
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC--CCCCchHHHhc--------chHHHHHHHHHHHHcCCCCEEEEEcC
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT--GFMVGSRSEAN--------GIAKAGAKMVMAVSCAKVPKVTIIVG 445 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~--G~~~g~~~E~~--------g~~~~~a~~~~a~~~a~vP~isvi~g 445 (566)
.+++.+....+.++++..+ ...+-+|.|.-.+ .|..|.+-... ........++.++....+|+|+.|-|
T Consensus 24 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G 103 (261)
T PRK03580 24 NAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVNG 103 (261)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHHHHHHhCCCCEEEEECC
Confidence 6788888888888887665 4566777776554 26555432210 01111223567788899999999999
Q ss_pred CCCchhhh-hhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHH
Q 048389 446 GSFGAGNY-AMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYE 517 (566)
Q Consensus 446 ~~~Ggg~~-am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 517 (566)
.|+|||.. +++ .|+++|-++++++. ..+-+....+.+. +... ...++.- .-
T Consensus 104 ~a~GgG~~lala-----cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~-----------vg~~----~a~~l~l-~g 162 (261)
T PRK03580 104 YAFGGGFELALA-----ADFIVCADNASFALPEAKLGIVPDSGGVLRLPKR-----------LPPA----IANEMVM-TG 162 (261)
T ss_pred eeehHHHHHHHH-----CCEEEecCCCEEeCcccccCcCCCccHHHHHHHH-----------hCHH----HHHHHHH-hC
Confidence 99999864 333 57887776666553 3322222222110 1110 0011110 01
Q ss_pred hhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 518 KEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 518 ~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
+..++..+.+.|+||+|+++.++.+......+.+...
T Consensus 163 ~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 199 (261)
T PRK03580 163 RRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNS 199 (261)
T ss_pred CccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhC
Confidence 2357888889999999999988877776666555544
No 154
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=96.48 E-value=0.025 Score=57.77 Aligned_cols=161 Identities=17% Similarity=0.217 Sum_probs=91.8
Q ss_pred ECCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcCC------CCCCCccccccC-c-h----hhHH
Q 048389 123 VHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDSG------GAYLPKQAEVFP-D-K----ENFG 189 (566)
Q Consensus 123 I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~dsg------Garl~~~~~~~~-~-~----~~~~ 189 (566)
++|.-..|.-|++.. --+++....+.+..+++.+.+. .+-+|.|.-++ |+.+.+-..... . . ..+.
T Consensus 14 ~~~~v~~itlnrp~~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 92 (262)
T PRK06144 14 VRGGIARITFNRPAA-RNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRID 92 (262)
T ss_pred eeCCEEEEEecCCcc-cCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHH
Confidence 455434444555543 3488888899999998887765 35566554322 333321000000 0 0 0111
Q ss_pred HHHHHHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEeccH------------HHHHhhhccc------
Q 048389 190 RIFYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGP------------PLVKAATGEE------ 251 (566)
Q Consensus 190 ~i~~~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~GP------------~vv~~~~ge~------ 251 (566)
+++. .+.....|+|+.|-|.|+|||..+...||++|+. +++.+.+.-. ..+....|..
T Consensus 93 ~~~~---~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~-~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a~~l~ 168 (262)
T PRK06144 93 RVLG---ALEQLRVPTIAAIAGACVGGGAAIAAACDLRIAT-PSARFGFPIARTLGNCLSMSNLARLVALLGAARVKDML 168 (262)
T ss_pred HHHH---HHHhCCCCEEEEECCeeeehHHHHHHhCCEEEec-CCCEeechhHHhccCCCCccHHHHHHHHhCHHHHHHHH
Confidence 2222 2334468999999999999999998899998875 4676654211 0111112211
Q ss_pred ccccCCCcccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 252 ISAEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 252 v~~e~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
++.+.+.+.+.+ .-|++|.++++ ++..+.+.++...+
T Consensus 169 l~g~~~~a~eA~--~~Glv~~vv~~-~~l~~~a~~~a~~i 205 (262)
T PRK06144 169 FTARLLEAEEAL--AAGLVNEVVED-AALDARADALAELL 205 (262)
T ss_pred HcCCCcCHHHHH--HcCCcCeecCH-HHHHHHHHHHHHHH
Confidence 133444455555 47999999976 45555565555544
No 155
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=96.48 E-value=0.033 Score=56.68 Aligned_cols=162 Identities=16% Similarity=0.174 Sum_probs=90.1
Q ss_pred CCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcCC------CCCCCccccc-cCchhhHHHHH-HH
Q 048389 124 HGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDSG------GAYLPKQAEV-FPDKENFGRIF-YN 194 (566)
Q Consensus 124 ~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~dsg------Garl~~~~~~-~~~~~~~~~i~-~~ 194 (566)
+|.-+.|.-|++. . =++.......+..+++.+.+. .+-+|.|.-++ |+.+.+-... ......+...+ ..
T Consensus 10 ~~~v~~itlnrp~-~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 87 (258)
T PRK09076 10 DGHVAILTLNNPP-A-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEA 87 (258)
T ss_pred ECCEEEEEECCCC-c-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHH
Confidence 3433334445554 3 578899999999999887754 45555554323 2222110000 00000111111 11
Q ss_pred HHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------c----cHHHHHhhhccc------ccccCC
Q 048389 195 QAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------A----GPPLVKAATGEE------ISAEDL 257 (566)
Q Consensus 195 ~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~----GP~vv~~~~ge~------v~~e~l 257 (566)
...+.....|+|++|-|.|+|||..++..||++|+. +++++++ . |...+...+|.. ++.+.+
T Consensus 88 ~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~l~g~~~ 166 (258)
T PRK09076 88 FEALSAFRGVSIAAINGYAMGGGLECALACDIRIAE-EQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERV 166 (258)
T ss_pred HHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEec-CCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcC
Confidence 223444578999999999999999998899998865 5676644 1 111122222311 133444
Q ss_pred CcccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 258 GGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 258 Gga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
.+.+.+ .-|++|.+++++ +..+.+.++..-+
T Consensus 167 ~a~eA~--~~Glv~~vv~~~-~l~~~a~~~a~~l 197 (258)
T PRK09076 167 DAATAL--RIGLVEEVVEKG-EAREAALALAQKV 197 (258)
T ss_pred CHHHHH--HCCCCceecCch-hHHHHHHHHHHHH
Confidence 444455 479999999764 4555665555443
No 156
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=96.47 E-value=0.039 Score=55.99 Aligned_cols=157 Identities=11% Similarity=0.072 Sum_probs=91.2
Q ss_pred EEEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcCC-----CCCCCcccc-ccC--c-hhhHHHHHHHHHH
Q 048389 128 CMFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDSG-----GAYLPKQAE-VFP--D-KENFGRIFYNQAI 197 (566)
Q Consensus 128 v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~dsg-----Garl~~~~~-~~~--~-~~~~~~i~~~~a~ 197 (566)
|+++-.|.--+.-++.....+.+.++++.+... .+-+|.|.-.+ |..+.+-.. ... . ...+.+++. .
T Consensus 16 v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~---~ 92 (251)
T PRK06023 16 VQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLI---A 92 (251)
T ss_pred EEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHH---H
Confidence 555544443345688899999999999877654 45666665433 333321000 000 0 011112232 3
Q ss_pred HcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------c---c-HHHHHhhhccc------ccccCCCcc
Q 048389 198 MSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------A---G-PPLVKAATGEE------ISAEDLGGA 260 (566)
Q Consensus 198 ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~---G-P~vv~~~~ge~------v~~e~lGga 260 (566)
+....+|+|++|-|.|+|||..+...||++|+. +++++.+ . | .-.+....|.. ++.+.+++.
T Consensus 93 l~~~~kPvIAav~G~a~GgG~~la~acD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~ 171 (251)
T PRK06023 93 LAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFAS-PRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAE 171 (251)
T ss_pred HHhCCCCEEEEeCCceecHHHHHHHhCCEEEEe-CCCEecCcccccCCCCCchHHHHHHHHHhHHHHHHHHHhCCCCCHH
Confidence 444579999999999999999999999999875 4565432 1 1 11122222211 123344455
Q ss_pred cccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 261 AVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 261 ~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
+.+ ..|++|.+++++ +..+.++++...|
T Consensus 172 eA~--~~Glv~~vv~~~-~l~~~a~~~a~~l 199 (251)
T PRK06023 172 AAQ--EAGLIWKIVDEE-AVEAETLKAAEEL 199 (251)
T ss_pred HHH--HcCCcceeeCHH-HHHHHHHHHHHHH
Confidence 556 489999999754 4556666665554
No 157
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=96.47 E-value=0.033 Score=56.71 Aligned_cols=162 Identities=17% Similarity=0.144 Sum_probs=92.2
Q ss_pred CCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcCC-----CCCCCccccc---cCchhhHHHHH-H
Q 048389 124 HGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDSG-----GAYLPKQAEV---FPDKENFGRIF-Y 193 (566)
Q Consensus 124 ~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~dsg-----Garl~~~~~~---~~~~~~~~~i~-~ 193 (566)
+|.-..|.-|.+. . -+++....+.+..+++.+.+. .+-+|.|.-.| |..+.+-... ......+...+ .
T Consensus 11 ~~~v~~itlnrp~-~-Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (257)
T PRK06495 11 SDHVAVVTLDNPP-V-NALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRE 88 (257)
T ss_pred eCCEEEEEECCCc-c-ccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHH
Confidence 3333334455554 3 789999999999999887765 45556665433 2233210000 00001111111 1
Q ss_pred HHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeE-------EeccHH-HHHhhhccc------ccccCCCc
Q 048389 194 NQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTI-------FLAGPP-LVKAATGEE------ISAEDLGG 259 (566)
Q Consensus 194 ~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i-------~~~GP~-vv~~~~ge~------v~~e~lGg 259 (566)
....+.....|+|++|-|.|+|||..++..||++|+. +++++ ++.|+. .+...+|.. ++.+.+.+
T Consensus 89 ~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~~~~~~l~~~~g~~~a~~lll~g~~~~a 167 (257)
T PRK06495 89 CFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVAS-ENAVFGLPEIDVGLAGGGKHAMRLFGHSLTRRMMLTGYRVPA 167 (257)
T ss_pred HHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEec-CCCEeeChhhccCccccHHHHHHHhCHHHHHHHHHcCCeeCH
Confidence 1123444578999999999999999998899998876 45544 333332 122222311 13334445
Q ss_pred ccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 260 AAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 260 a~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
.+-+ .-|++|.++++ .+..+.++++..-+
T Consensus 168 ~eA~--~~GLv~~vv~~-~~~~~~a~~~a~~l 196 (257)
T PRK06495 168 AELY--RRGVIEACLPP-EELMPEAMEIAREI 196 (257)
T ss_pred HHHH--HcCCcceecCH-HHHHHHHHHHHHHH
Confidence 5555 47999999975 44666666666555
No 158
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=96.47 E-value=0.15 Score=52.04 Aligned_cols=156 Identities=10% Similarity=0.070 Sum_probs=91.0
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC--CCCCchHHHh-c-----ch-HHHHHHHHHHHHcCCCCEEEEEcCC
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT--GFMVGSRSEA-N-----GI-AKAGAKMVMAVSCAKVPKVTIIVGG 446 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~--G~~~g~~~E~-~-----g~-~~~~a~~~~a~~~a~vP~isvi~g~ 446 (566)
.+++.+....+.++++.++ ...+-+|.|.-.+ .|..|.+-.. . +. ...... +..+.....|+|+.|-|.
T Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~kPvIaav~G~ 104 (259)
T PRK06494 26 NALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFGG-LTSRFDLDKPIIAAVNGV 104 (259)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHHHH-HHHHhcCCCCEEEEECCE
Confidence 6788999998988888665 4556777776544 3555543221 0 00 011112 233446789999999999
Q ss_pred CCchhhh-hhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHHh
Q 048389 447 SFGAGNY-AMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEK 518 (566)
Q Consensus 447 ~~Ggg~~-am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 518 (566)
|+|||.- ++ ..|+++|-+++++++ ..+-+....+.+. +.... +. +-+.. -+
T Consensus 105 a~GgG~~lal-----acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-----------vg~~~--a~-~lll~--g~ 163 (259)
T PRK06494 105 AMGGGFELAL-----ACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQ-----------IGLKR--AM-GMILT--GR 163 (259)
T ss_pred EecHHHHHHH-----hCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHH-----------cCHHH--HH-HHHHc--CC
Confidence 9999864 33 357777766665554 3333333222210 11100 00 10100 11
Q ss_pred hCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 519 EGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 519 ~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
..++..+.+.|+||.|+++.++-+......+.+...
T Consensus 164 ~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~ 199 (259)
T PRK06494 164 RVTAREGLELGFVNEVVPAGELLAAAERWADDILAC 199 (259)
T ss_pred cCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhc
Confidence 257778889999999999988776666665555543
No 159
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=96.47 E-value=0.12 Score=53.21 Aligned_cols=158 Identities=8% Similarity=0.057 Sum_probs=92.8
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC-CCCCchHHHhc----------------chHHHHHHHHHHHHcCCCC
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT-GFMVGSRSEAN----------------GIAKAGAKMVMAVSCAKVP 438 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~-G~~~g~~~E~~----------------g~~~~~a~~~~a~~~a~vP 438 (566)
.+++.+....+.++++.++ ...+-+|.|.-.+ .|..|.+-... ...+...+++..+....+|
T Consensus 32 Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP 111 (276)
T PRK05864 32 NSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQP 111 (276)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccchhHHHHHHHHHHHHHHHHHhCCCC
Confidence 6788888888888887665 3556677776433 33333321100 0112234566778889999
Q ss_pred EEEEEcCCCCchhhhhhccCCCCCCEEEEecCcee-------eccCHH-HHHHHHhhhhhhhhhhcCCCCchHHHHHHHH
Q 048389 439 KVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARI-------SVMGGA-QAAGVLSQVEKDKKKKQGIEWTKQEEEMFKA 510 (566)
Q Consensus 439 ~isvi~g~~~Ggg~~am~~~~~~~d~~~A~p~A~i-------~vmg~e-~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (566)
+|+.|-|.++|||.--.+ ..|+++|-+++++ |+..+. +....+.+. +.... + ++
T Consensus 112 vIaav~G~a~GgG~~Lal----acD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~-----------vG~~~--A-~~ 173 (276)
T PRK05864 112 VIAAVNGPAIGGGLCLAL----AADIRVASSSAYFRAAGINNGLTASELGLSYLLPRA-----------IGSSR--A-FE 173 (276)
T ss_pred EEEEECCEeehhHHHHHH----hCCEEEeeCCCEecCcccccCCCCCCcchheehHhh-----------hCHHH--H-HH
Confidence 999999999999864222 3588888777655 444333 222222110 00000 0 01
Q ss_pred HHHHHHHhhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 511 KVVEAYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 511 ~l~~~~~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
-+.. -+..++..+.+.|+||+|+++.++-+......+.+...
T Consensus 174 l~l~--g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 215 (276)
T PRK05864 174 IMLT--GRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGF 215 (276)
T ss_pred HHHc--CCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhC
Confidence 1100 11247778889999999999988766655555555443
No 160
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=96.46 E-value=0.12 Score=53.17 Aligned_cols=157 Identities=15% Similarity=0.157 Sum_probs=93.8
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC-CCCCchHHHh-------------cchHHHHHHHHHHHHcCCCCEEE
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT-GFMVGSRSEA-------------NGIAKAGAKMVMAVSCAKVPKVT 441 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~-G~~~g~~~E~-------------~g~~~~~a~~~~a~~~a~vP~is 441 (566)
.+++.+....+..+++.++ ...+-+|.|.-.+ .|..|.+-.. .........++.++.....|+|+
T Consensus 39 Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 118 (277)
T PRK08258 39 NPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPIIA 118 (277)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 6788888888888887665 4566677775543 2333332111 01112234567788899999999
Q ss_pred EEcCCCCchhhh-hhccCCCCCCEEEEecCceeec-------cCHH-HHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHH
Q 048389 442 IIVGGSFGAGNY-AMCGRAYSPNFMFLWPNARISV-------MGGA-QAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKV 512 (566)
Q Consensus 442 vi~g~~~Ggg~~-am~~~~~~~d~~~A~p~A~i~v-------mg~e-~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 512 (566)
.|-|.|+|||.. +++ .|+++|.+++++++ .++. +....+.+. +.... .++-+
T Consensus 119 aV~G~a~GgG~~Lala-----cD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~-----------vG~~~---a~~l~ 179 (277)
T PRK08258 119 AVDGVCAGAGAILAMA-----SDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRI-----------IGQGR---ASELL 179 (277)
T ss_pred EECCeeehHHHHHHHh-----CCEEEecCCCEEeccccccCcCCCCchHHHHHHHH-----------hCHHH---HHHHH
Confidence 999999999864 443 58888777666654 3222 222222110 00100 00111
Q ss_pred HHHHHhhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 513 VEAYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 513 ~~~~~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
.. -+..++..+.+.|+||+|+++.++.+......+.+...
T Consensus 180 lt--g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 219 (277)
T PRK08258 180 YT--GRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLAAG 219 (277)
T ss_pred Hc--CCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhC
Confidence 00 11257888899999999999888777666665555443
No 161
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=96.45 E-value=0.17 Score=52.19 Aligned_cols=158 Identities=8% Similarity=0.002 Sum_probs=93.3
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC---CCCCchHHHh-c----c------hHHHHHHHHHHHHcCCCCEEE
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT---GFMVGSRSEA-N----G------IAKAGAKMVMAVSCAKVPKVT 441 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~---G~~~g~~~E~-~----g------~~~~~a~~~~a~~~a~vP~is 441 (566)
.+++.+....+.++++..+ ...+=+|+|.-.+ .|..|.+-.. . . .......++..+.....|+|+
T Consensus 33 Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 112 (278)
T PLN03214 33 NSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATVC 112 (278)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 6788888888988887665 3456667775543 2655543211 0 0 001112356778889999999
Q ss_pred EEcCCCCchhhhhhccCCCCCCEEEEecCceeec-------c-CHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHH
Q 048389 442 IIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISV-------M-GGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVV 513 (566)
Q Consensus 442 vi~g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~v-------m-g~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 513 (566)
.|-|.|+|||..-.+ .+|++++.++++++. . ..-+....+.+. +.... .++-+.
T Consensus 113 aV~G~a~GgG~~lal----acD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~-----------~G~~~---a~~lll 174 (278)
T PLN03214 113 AIRGACPAGGCAVSL----CCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRV-----------IDRKV---AESLLL 174 (278)
T ss_pred EEcCcccchHHHHHH----hCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHh-----------cCHHH---HHHHHH
Confidence 999999999865322 368998888776664 1 222222222110 01100 001111
Q ss_pred HHHHhhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 514 EAYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 514 ~~~~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
. -+..++..+.+.|+||.|+++.++.+......+.+...
T Consensus 175 t--g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~ 213 (278)
T PLN03214 175 R--GRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALKL 213 (278)
T ss_pred c--CCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHcC
Confidence 0 01246778889999999999887766655555554443
No 162
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=96.45 E-value=0.031 Score=57.03 Aligned_cols=160 Identities=16% Similarity=0.238 Sum_probs=91.0
Q ss_pred CCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcCC------CCCCCccccc-cCchh-----hHHH
Q 048389 124 HGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDSG------GAYLPKQAEV-FPDKE-----NFGR 190 (566)
Q Consensus 124 ~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~dsg------Garl~~~~~~-~~~~~-----~~~~ 190 (566)
+|.-..|.-|++..+ -++...-.+.+..+++.+... .+-+|.|.-++ |+.+.+-... ..... .+..
T Consensus 10 ~~~v~~itlnrp~~~-Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 88 (259)
T TIGR01929 10 TDGIAKITINRPQVR-NAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLD 88 (259)
T ss_pred CCCEEEEEecCCccc-cCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHH
Confidence 343334455555543 388888888999888877654 45555554333 2233210000 00000 0112
Q ss_pred HHHHHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEec-----------cHHHHHhhhccc------cc
Q 048389 191 IFYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLA-----------GPPLVKAATGEE------IS 253 (566)
Q Consensus 191 i~~~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~-----------GP~vv~~~~ge~------v~ 253 (566)
++. .+.....|+|+.|-|.|+|||..+...||++|+. +++++++. |...+....|.. ++
T Consensus 89 ~~~---~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~l~l~ 164 (259)
T TIGR01929 89 VQR---QIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAA-ENARFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFL 164 (259)
T ss_pred HHH---HHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEec-CCCEecCcccccccCCCccHHHHHHHHhHHHHHHHHHHh
Confidence 222 2344578999999999999999998899998876 45666442 111222222311 12
Q ss_pred ccCCCcccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 254 AEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 254 ~e~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
.+.+.+.+.+ .-|++|.+++++ +..+.+.++...|
T Consensus 165 g~~~~a~eA~--~~Glv~~vv~~~-~l~~~a~~~a~~l 199 (259)
T TIGR01929 165 CRQYDAEQAL--DMGLVNTVVPLA-DLEKETVRWCREI 199 (259)
T ss_pred CCccCHHHHH--HcCCcccccCHH-HHHHHHHHHHHHH
Confidence 3344455556 489999999764 5566666665544
No 163
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=96.45 E-value=0.023 Score=57.91 Aligned_cols=113 Identities=12% Similarity=0.137 Sum_probs=83.5
Q ss_pred ccccccceEEEEEEEECCeEEEEEEe--CCccCHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHhcchHHHHHH
Q 048389 350 FKKLYGTTLVTGFAKIFGQPVGIIGN--NGILFHESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAK 427 (566)
Q Consensus 350 ~~~~~g~~vv~G~arI~G~~Vgvvan--~G~l~~~~a~K~ar~i~l~~~~~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~ 427 (566)
+....|..+||-.-|-+ .+++.+. ...++.+.+..+-|.|+...+. .||.++.||||-. ....-+
T Consensus 43 ie~kr~srvI~~Ihrqe--~~~~~giPi~~~I~i~dse~v~raI~~~~~~-~~IdLii~TpGG~----------v~AA~~ 109 (285)
T PF01972_consen 43 IEEKRGSRVITLIHRQE--RVSFLGIPIYRYIDIDDSEFVLRAIREAPKD-KPIDLIIHTPGGL----------VDAAEQ 109 (285)
T ss_pred HHHHhCCEEEEEEEecc--ccceeccccceeEcHhhHHHHHHHHHhcCCC-CceEEEEECCCCc----------HHHHHH
Confidence 34446777887776632 2333332 3778888999999999988754 4899999999963 333345
Q ss_pred HHHHHHcCCCCEEEEEcCCCCchhhhhhccCCCCCCEEEEecCceeeccCHH
Q 048389 428 MVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGA 479 (566)
Q Consensus 428 ~~~a~~~a~vP~isvi~g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~vmg~e 479 (566)
+..++.+...|+.++|...|+++|.+-. +++|-++|-|+|.+|..+|.
T Consensus 110 I~~~l~~~~~~v~v~VP~~A~SAGTlIA----LaADeIvM~p~a~LGpiDPq 157 (285)
T PF01972_consen 110 IARALREHPAKVTVIVPHYAMSAGTLIA----LAADEIVMGPGAVLGPIDPQ 157 (285)
T ss_pred HHHHHHhCCCCEEEEECcccccHHHHHH----HhCCeEEECCCCccCCCCcc
Confidence 6677777888999999899999987632 24799999999999988874
No 164
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=96.44 E-value=0.04 Score=56.53 Aligned_cols=161 Identities=15% Similarity=0.137 Sum_probs=91.0
Q ss_pred EEEEEecCccccccCChHHHHHHHHHHHHHHhCC-CcEEEEEcCC------CCCCCccccccCc---hhhHHHHHH-HHH
Q 048389 128 CMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCK-LPCIYLVDSG------GAYLPKQAEVFPD---KENFGRIFY-NQA 196 (566)
Q Consensus 128 v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~-lPlV~l~dsg------Garl~~~~~~~~~---~~~~~~i~~-~~a 196 (566)
|+++--|.--..-++.....+.+..+++.+.+.. +=+|.|.-.+ |+.+.+-...... ...+...+. ...
T Consensus 21 v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (269)
T PRK06127 21 LGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQA 100 (269)
T ss_pred EEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 3434444333456889999999999999887664 3344443333 2222110000000 011111111 122
Q ss_pred HHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEec-----------cHHHHHhhhccc------ccccCCCc
Q 048389 197 IMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLA-----------GPPLVKAATGEE------ISAEDLGG 259 (566)
Q Consensus 197 ~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~-----------GP~vv~~~~ge~------v~~e~lGg 259 (566)
.+.....|+|+.|-|.|+|||..+...||++|+. +++++.+. |...+....|.. ++.+.+.+
T Consensus 101 ~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a 179 (269)
T PRK06127 101 ALADYAKPTIACIRGYCIGGGMGIALACDIRIAA-EDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDA 179 (269)
T ss_pred HHHhCCCCEEEEECCEEecHHHHHHHhCCEEEee-CCCEeeCchhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCH
Confidence 3445578999999999999999999999998875 45666441 111122222211 12233334
Q ss_pred ccccccccCcceEEEcchhHHHHHHHHHHHhcc
Q 048389 260 AAVHCKTSGVSDYFAQDELHGLSLGRNIIKNLH 292 (566)
Q Consensus 260 a~~h~~~sG~~d~v~~de~~a~~~~r~~ls~Lp 292 (566)
.+.+ .-|++|.++++ ++..+.++++...+-
T Consensus 180 ~eA~--~~Glv~~vv~~-~~l~~~a~~~a~~l~ 209 (269)
T PRK06127 180 AEAL--RIGLVHRVTAA-DDLETALADYAATIA 209 (269)
T ss_pred HHHH--HcCCCCEeeCH-HHHHHHHHHHHHHHH
Confidence 4445 47999999975 467777777776654
No 165
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=96.43 E-value=0.051 Score=55.22 Aligned_cols=162 Identities=18% Similarity=0.160 Sum_probs=90.6
Q ss_pred ECCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcCC-----CCCCCccccccCchhhHHHHHHHHH
Q 048389 123 VHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDSG-----GAYLPKQAEVFPDKENFGRIFYNQA 196 (566)
Q Consensus 123 I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~dsg-----Garl~~~~~~~~~~~~~~~i~~~~a 196 (566)
++|.-+.|.-|.+... -++...-.+.+..+++.+.+. .+-+|.|.-+| |+.+.+-.. ........+.+....
T Consensus 9 ~~~~v~~itlnrp~~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~-~~~~~~~~~~~~~~~ 86 (254)
T PRK08252 9 RRGRVLIITINRPEAR-NAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFAR-GERPSIPGRGFGGLT 86 (254)
T ss_pred EECCEEEEEECCCccc-CCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhc-ccchhhhHHHHHHHH
Confidence 3443344445555543 478888889899888887654 56677775433 332321000 000001112222221
Q ss_pred HHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------cc----HHHHHhhhccc------ccccCCCc
Q 048389 197 IMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------AG----PPLVKAATGEE------ISAEDLGG 259 (566)
Q Consensus 197 ~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~G----P~vv~~~~ge~------v~~e~lGg 259 (566)
. ....+|+|+.|-|.|+|||..++..||++|+. +++.+.+ .. ...+....|.. ++.+.+.+
T Consensus 87 ~-~~~~kPvIaav~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a 164 (254)
T PRK08252 87 E-RPPRKPLIAAVEGYALAGGFELALACDLIVAA-RDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTA 164 (254)
T ss_pred H-hcCCCCEEEEECCEEehHHHHHHHhCCEEEEe-CCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHHHHHcCCccCH
Confidence 1 23468999999999999999998899998875 4666543 10 00111111211 12233444
Q ss_pred ccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 260 AAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 260 a~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
.+.+ .-|++|.+++++ +.++.+.++...+
T Consensus 165 ~eA~--~~Glv~~vv~~~-~l~~~a~~~a~~l 193 (254)
T PRK08252 165 ERAH--ELGLVNRLTEPG-QALDAALELAERI 193 (254)
T ss_pred HHHH--HcCCcceecCcc-hHHHHHHHHHHHH
Confidence 4455 479999999754 4566666665544
No 166
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=96.41 E-value=0.039 Score=56.33 Aligned_cols=164 Identities=15% Similarity=0.122 Sum_probs=90.3
Q ss_pred ECCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhCC-CcEEEEEcCC-----CCCCCccccccC--chh--hH-HHH
Q 048389 123 VHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCK-LPCIYLVDSG-----GAYLPKQAEVFP--DKE--NF-GRI 191 (566)
Q Consensus 123 I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~-lPlV~l~dsg-----Garl~~~~~~~~--~~~--~~-~~i 191 (566)
++|.-..|.-|.+.. .-++...-.+.+..+++.+.... +-+|.|.-.| |+.+.+-...-. ... .+ -..
T Consensus 11 ~~~~v~~itlnrp~~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 89 (263)
T PRK07799 11 QRGHTLIVTMNRPEA-RNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDPSR 89 (263)
T ss_pred EECCEEEEEECCCcc-cCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhhhhhhhH
Confidence 344333445555543 34888999999999998877554 5556554432 333321000000 000 00 001
Q ss_pred HHHHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------c----cHHHHHhhhccc------ccc
Q 048389 192 FYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------A----GPPLVKAATGEE------ISA 254 (566)
Q Consensus 192 ~~~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~----GP~vv~~~~ge~------v~~ 254 (566)
+..+..+.....|+|+.|-|.|+|||.-+...||++|+. +++++++ . |...+...+|.. ++.
T Consensus 90 ~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg 168 (263)
T PRK07799 90 IDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAG-ESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTG 168 (263)
T ss_pred HHHHHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEec-CCCEecCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcC
Confidence 111222334468999999999999999998899998876 4565543 1 111121122211 123
Q ss_pred cCCCcccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 255 EDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 255 e~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
+.+.+.+.+ ..|++|.+++++ +..+.+.++..-+
T Consensus 169 ~~~~a~eA~--~~Glv~~vv~~~-~l~~~a~~~a~~~ 202 (263)
T PRK07799 169 RHITAAEAK--EIGLIGHVVPDG-QALDKALELAELI 202 (263)
T ss_pred CCCCHHHHH--HcCCccEecCcc-hHHHHHHHHHHHH
Confidence 334444455 489999999765 3556666665544
No 167
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=96.40 E-value=0.041 Score=55.92 Aligned_cols=163 Identities=17% Similarity=0.157 Sum_probs=91.9
Q ss_pred CCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhCC-CcEEEEEcCCC-----CCCCcccc-----ccCchhhHHHHH
Q 048389 124 HGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCK-LPCIYLVDSGG-----AYLPKQAE-----VFPDKENFGRIF 192 (566)
Q Consensus 124 ~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~-lPlV~l~dsgG-----arl~~~~~-----~~~~~~~~~~i~ 192 (566)
++.-+.+.-|++. ..-++...-.+.+..+++.+.+.. +-+|.|.-.+. ..+.+-.. .......+.+.+
T Consensus 9 ~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 87 (255)
T PRK07260 9 EDDLATLTLNRPE-VSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELV 87 (255)
T ss_pred ECCEEEEEeCCcc-cccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhHHHHHHHH
Confidence 3433334444444 334688899999999998776554 45565544332 23221000 000000111111
Q ss_pred H-HHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEec-----------cHHHHHhhhccc------ccc
Q 048389 193 Y-NQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLA-----------GPPLVKAATGEE------ISA 254 (566)
Q Consensus 193 ~-~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~-----------GP~vv~~~~ge~------v~~ 254 (566)
. ....+....+|+|+.|-|.|+|||.-++..||++|+. +++.+++. ++..+....|.. ++.
T Consensus 88 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g 166 (255)
T PRK07260 88 NEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIAS-TKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTG 166 (255)
T ss_pred HHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEe-CCCEEechHhhcCCCCCCchhhhhHHhhCHHHHHHHHHhC
Confidence 1 1123445578999999999999999999999998876 45665431 111222222311 133
Q ss_pred cCCCcccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 255 EDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 255 e~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
+.+.+.+.+ ..|++|.+++++ +..+.+.++...+
T Consensus 167 ~~~sa~eA~--~~Glv~~vv~~~-~l~~~a~~~a~~l 200 (255)
T PRK07260 167 EALTAEKAL--EYGFVYRVAESE-KLEKTCEQLLKKL 200 (255)
T ss_pred CccCHHHHH--HcCCcceecCHh-HHHHHHHHHHHHH
Confidence 445555556 489999999754 4566666666554
No 168
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=96.40 E-value=0.037 Score=56.40 Aligned_cols=157 Identities=12% Similarity=0.130 Sum_probs=88.7
Q ss_pred EEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcCCC-C-----CCCcccc-ccCchhhHHHH-HHHHHHHcC
Q 048389 130 FVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDSGG-A-----YLPKQAE-VFPDKENFGRI-FYNQAIMSA 200 (566)
Q Consensus 130 v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~dsgG-a-----rl~~~~~-~~~~~~~~~~i-~~~~a~ls~ 200 (566)
|.-|.+. ..=+++..-...+.++++.+.+. .+-+|.|.-.++ + .+.+-.. .......+... ......+..
T Consensus 17 itlnrp~-~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (260)
T PRK07657 17 ITLNRPR-AANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQ 95 (260)
T ss_pred EEEeCCc-ccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHh
Confidence 4445444 33478888889999999877654 445555544343 2 2211000 00000111111 111222334
Q ss_pred CCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------c---c-HHHHHhhhccc------ccccCCCccccc
Q 048389 201 EGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------A---G-PPLVKAATGEE------ISAEDLGGAAVH 263 (566)
Q Consensus 201 ~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~---G-P~vv~~~~ge~------v~~e~lGga~~h 263 (566)
..+|+|+.|-|.|+|||..+...||++|+.+ ++++.+ . | ...+....|.. ++.+.+.+.+.+
T Consensus 96 ~~kPvIaav~G~a~GgG~~lal~cD~~ia~~-~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~ 174 (260)
T PRK07657 96 LPQPVIAAINGIALGGGLELALACDFRIAAE-SASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAK 174 (260)
T ss_pred CCCCEEEEEcCEeechHHHHHHhCCEEEeeC-CCEEcCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHH
Confidence 4689999999999999999988999998764 565533 1 1 11122222211 123344455556
Q ss_pred ccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 264 CKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 264 ~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
.-|++|.++++ ++..+.++++..-+
T Consensus 175 --~~Glv~~vv~~-~~l~~~a~~~a~~l 199 (260)
T PRK07657 175 --EIGLVEFVVPA-HLLEEKAIEIAEKI 199 (260)
T ss_pred --HcCCCCeecCH-HHHHHHHHHHHHHH
Confidence 47999999975 45667777666554
No 169
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=96.40 E-value=0.022 Score=57.73 Aligned_cols=154 Identities=16% Similarity=0.147 Sum_probs=88.4
Q ss_pred EEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEc-----CCCCCCCccccc--cCch----hhHHHHHHHHH
Q 048389 129 MFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVD-----SGGAYLPKQAEV--FPDK----ENFGRIFYNQA 196 (566)
Q Consensus 129 ~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~d-----sgGarl~~~~~~--~~~~----~~~~~i~~~~a 196 (566)
.|.-|.+. + -++.......+..+++.+.+. .+-+|.|.- |+|+.+.+-... .... ..+.+.+.
T Consensus 14 ~itlnrp~-~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~--- 88 (249)
T PRK07938 14 EVTVDYPP-V-NALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFR--- 88 (249)
T ss_pred EEEECCCC-c-ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHH---
Confidence 34445554 3 688899999999999887655 455555543 234444221000 0000 01112232
Q ss_pred HHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------ccHH-HHHhhhccc------ccccCCCcccc
Q 048389 197 IMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------AGPP-LVKAATGEE------ISAEDLGGAAV 262 (566)
Q Consensus 197 ~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~GP~-vv~~~~ge~------v~~e~lGga~~ 262 (566)
.+....+|+|+.|-|.|+|||..+...||++|+.+ ++++++ .|.. .+...+|.. ++.+.+.+.+.
T Consensus 89 ~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~-~a~f~~pe~~~G~~g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA 167 (249)
T PRK07938 89 AVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASD-DATFGLPEVDRGALGAATHLQRLVPQHLMRALFFTAATITAAEL 167 (249)
T ss_pred HHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeC-CCEeeCccceecCchhHHHHHHhcCHHHHHHHHHhCCcCCHHHH
Confidence 34445799999999999999999988999988754 554433 2211 111111211 12333444445
Q ss_pred cccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 263 HCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 263 h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
+ ..|++|.++++ ++..+.+.++..-+
T Consensus 168 ~--~~Glv~~vv~~-~~l~~~a~~~a~~l 193 (249)
T PRK07938 168 H--HFGSVEEVVPR-DQLDEAALEVARKI 193 (249)
T ss_pred H--HCCCccEEeCH-HHHHHHHHHHHHHH
Confidence 5 58999999974 45566666665544
No 170
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=96.39 E-value=0.055 Score=54.03 Aligned_cols=148 Identities=18% Similarity=0.092 Sum_probs=85.6
Q ss_pred ccCChHHHHHHHHHHHHHHhCCCcEEEEEcCC-----CCCCCccccccCc-hhhHHHHHHHHHHHcCCCcCEEEEEeccc
Q 048389 140 GTYFPITIKKHLRAQEIAAQCKLPCIYLVDSG-----GAYLPKQAEVFPD-KENFGRIFYNQAIMSAEGIPQIALVLGSC 213 (566)
Q Consensus 140 Gs~g~~~~~K~~r~~~lA~~~~lPlV~l~dsg-----Garl~~~~~~~~~-~~~~~~i~~~~a~ls~~~VP~isvv~G~~ 213 (566)
-+++......+..+++.+. ...-+|.+.-.+ |+.+.+-...... ...+........++.....|+|+.|-|.|
T Consensus 24 Nal~~~~~~~l~~~l~~~~-~~~~vvvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a 102 (229)
T PRK06213 24 NALSPAMIDALNAALDQAE-DDRAVVVITGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACTGHA 102 (229)
T ss_pred CCCCHHHHHHHHHHHHHhh-ccCcEEEEeCCCCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCCCEEEEEcCee
Confidence 5789999999999998876 455666665543 3322110000000 00011111112234445789999999999
Q ss_pred cccccccccCCCeeEEEecceeEEe-------ccHH-H---HHhhhccc------ccccCCCcccccccccCcceEEEcc
Q 048389 214 TAGGAYIPAMADESVMVKGNGTIFL-------AGPP-L---VKAATGEE------ISAEDLGGAAVHCKTSGVSDYFAQD 276 (566)
Q Consensus 214 ~GG~ay~~a~~d~vi~v~~~a~i~~-------~GP~-v---v~~~~ge~------v~~e~lGga~~h~~~sG~~d~v~~d 276 (566)
+|||..++..||++|+.++.+++++ .-|. . +...+|.. ++.+.+.+.+.+ ..|++|.++++
T Consensus 103 ~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~--~~Glv~~vv~~ 180 (229)
T PRK06213 103 IAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQRAVINAEMFDPEEAV--AAGFLDEVVPP 180 (229)
T ss_pred eHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHHHHHHHcCcccCHHHHH--HCCCceeccCh
Confidence 9999999889999988654265543 1111 1 11111111 122334444445 47999999975
Q ss_pred hhHHHHHHHHHHHhc
Q 048389 277 ELHGLSLGRNIIKNL 291 (566)
Q Consensus 277 e~~a~~~~r~~ls~L 291 (566)
++..+.+.++...|
T Consensus 181 -~~l~~~a~~~a~~l 194 (229)
T PRK06213 181 -EQLLARAQAAAREL 194 (229)
T ss_pred -HHHHHHHHHHHHHH
Confidence 45677777777655
No 171
>PLN02888 enoyl-CoA hydratase
Probab=96.39 E-value=0.18 Score=51.60 Aligned_cols=155 Identities=13% Similarity=0.082 Sum_probs=91.9
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC-CCCCchHH-Hh----cchH-HHHHHHHHHHHcCCCCEEEEEcCCCC
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT-GFMVGSRS-EA----NGIA-KAGAKMVMAVSCAKVPKVTIIVGGSF 448 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~-G~~~g~~~-E~----~g~~-~~~a~~~~a~~~a~vP~isvi~g~~~ 448 (566)
.+++.+....+.++++.++ ...+-+|.|.-.+ .|..|.+- |. .+-. ....+++..+....+|+|+.|-|.++
T Consensus 32 Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~ 111 (265)
T PLN02888 32 NALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFAI 111 (265)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHHHHHHhCCCCEEEEECCeee
Confidence 6788999999999888665 4556667776433 34444432 11 1111 11234566788899999999999999
Q ss_pred chhhh-hhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHHhhC
Q 048389 449 GAGNY-AMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEKEG 520 (566)
Q Consensus 449 Ggg~~-am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 520 (566)
|||.. ++ .+|+++|.+++.++. ..+-+....+.+. +.... + ++-+.. -+..
T Consensus 112 GgG~~lal-----~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-----------vG~~~--a-~~l~lt--g~~~ 170 (265)
T PLN02888 112 TAGFEIAL-----ACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRI-----------IGANR--A-REVSLT--AMPL 170 (265)
T ss_pred chHHHHHH-----hCCEEEecCCCEecCccccccCCCCccHhhHHHHH-----------hCHHH--H-HHHHHh--CCcc
Confidence 99864 33 358888887766654 3222222222110 01100 0 011100 1235
Q ss_pred CHHHHHhCcccceecCchhhHHHHHHHHHHhh
Q 048389 521 NAYYSTARLWDDGIIDPADTRKIIGFCISAAL 552 (566)
Q Consensus 521 ~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~ 552 (566)
++..+.+.|+||+|+++.++.+...+..+.+.
T Consensus 171 ~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la 202 (265)
T PLN02888 171 TAETAERWGLVNHVVEESELLKKAREVAEAII 202 (265)
T ss_pred CHHHHHHcCCccEeeChHHHHHHHHHHHHHHH
Confidence 77788899999999999877666555544444
No 172
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=96.38 E-value=0.043 Score=55.82 Aligned_cols=155 Identities=15% Similarity=0.177 Sum_probs=88.6
Q ss_pred EEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcCC------CCCCCccccccCch----hhHHHHHHHHHH
Q 048389 129 MFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDSG------GAYLPKQAEVFPDK----ENFGRIFYNQAI 197 (566)
Q Consensus 129 ~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~dsg------Garl~~~~~~~~~~----~~~~~i~~~~a~ 197 (566)
.|--|++. +-=++.....+.+..+++.+... .+-+|.|.-++ |+.+.+-....... ..+..++. .
T Consensus 14 ~itlnrp~-~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~---~ 89 (256)
T TIGR03210 14 WIMINRPA-KMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHS---A 89 (256)
T ss_pred EEEEcCCc-cccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHH---H
Confidence 34445554 33478888888888888877644 45556554333 23332100000000 01112222 2
Q ss_pred HcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------ccHH----HHHhhhcccc------cccCCCcc
Q 048389 198 MSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------AGPP----LVKAATGEEI------SAEDLGGA 260 (566)
Q Consensus 198 ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~GP~----vv~~~~ge~v------~~e~lGga 260 (566)
+.....|+|+.|-|.|+|||..++..||++|+. +++++.+ ..|. .+...+|... +.+.+.+.
T Consensus 90 l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~-~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~~lll~g~~~~a~ 168 (256)
T TIGR03210 90 IRDVPKPVIARVQGYAIGGGNVLVTICDLTIAS-EKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAREIWYLCRRYTAQ 168 (256)
T ss_pred HHhCCCCEEEEECCEEehhhHHHHHhCCEEEEe-CCCEEecccccccccCCccHHHHHHHHhCHHHHHHHHHhCCCcCHH
Confidence 344578999999999999999999999998876 4666654 2121 1222222211 33444555
Q ss_pred cccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 261 AVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 261 ~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
+.+ .-|++|.+++++ +..+.+.++...+
T Consensus 169 eA~--~~Glv~~vv~~~-~l~~~a~~~a~~i 196 (256)
T TIGR03210 169 EAL--AMGLVNAVVPHD-QLDAEVQKWCDEI 196 (256)
T ss_pred HHH--HcCCceeeeCHH-HHHHHHHHHHHHH
Confidence 566 479999999754 4556666665544
No 173
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=96.38 E-value=0.048 Score=55.97 Aligned_cols=161 Identities=17% Similarity=0.218 Sum_probs=90.7
Q ss_pred CCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcCC-----CCCCCccccc---c------Cc---h
Q 048389 124 HGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDSG-----GAYLPKQAEV---F------PD---K 185 (566)
Q Consensus 124 ~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~dsg-----Garl~~~~~~---~------~~---~ 185 (566)
+|.-..|.-|.+. +.-++...-.+-+.++++.+.+. .+-+|.|.-.| |+.+.+-... . .. .
T Consensus 13 ~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 91 (272)
T PRK06142 13 ADHVAQVTLNRPG-KGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDL 91 (272)
T ss_pred cCCEEEEEEcCCC-ccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccccccchHHH
Confidence 3433334444444 44578888999999999877654 46677775533 3333210000 0 00 0
Q ss_pred ----hhHHHHHHHHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEec-----------cHHHHHhhhcc
Q 048389 186 ----ENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLA-----------GPPLVKAATGE 250 (566)
Q Consensus 186 ----~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~-----------GP~vv~~~~ge 250 (566)
..+.+++.. +.....|+|++|-|.|+|||..+...||++|+.+ ++++++. |...+-..+|.
T Consensus 92 ~~~~~~~~~~~~~---i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~ 167 (272)
T PRK06142 92 RREILRLQAAINA---VADCRKPVIAAVQGWCIGGGVDLISACDMRYASA-DAKFSVREVDLGMVADVGSLQRLPRIIGD 167 (272)
T ss_pred HHHHHHHHHHHHH---HHhCCCCEEEEecCccccchHHHHHhCCEEEecC-CCeecchhhhhCCCCCchHHHHHHHHhCH
Confidence 011122222 3334689999999999999999988999988754 5665431 11111111121
Q ss_pred c------ccccCCCcccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 251 E------ISAEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 251 ~------v~~e~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
. ++.+.+.+.+.+ .-|++|.++++.++..+.+.++..-+
T Consensus 168 ~~a~~l~l~g~~~~a~eA~--~~GLv~~vv~~~~~l~~~a~~~a~~i 212 (272)
T PRK06142 168 GHLRELALTGRDIDAAEAE--KIGLVNRVYDDADALLAAAHATAREI 212 (272)
T ss_pred HHHHHHHHhCCCcCHHHHH--HcCCccEecCCHHHHHHHHHHHHHHH
Confidence 0 122333344445 48999999986455556666665544
No 174
>PLN02921 naphthoate synthase
Probab=96.38 E-value=0.13 Score=54.51 Aligned_cols=157 Identities=9% Similarity=0.084 Sum_probs=94.7
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC--CCCCchHHHhc------c--hHHH--HHHHHHHHHcCCCCEEEEE
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT--GFMVGSRSEAN------G--IAKA--GAKMVMAVSCAKVPKVTII 443 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~--G~~~g~~~E~~------g--~~~~--~a~~~~a~~~a~vP~isvi 443 (566)
.+++.+....+.+.++.++ ...+-+|+|.-.+ .|..|.+-... + .... ...++.++....+|+|+.|
T Consensus 89 Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAaV 168 (327)
T PLN02921 89 NAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMV 168 (327)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 6789999999988888665 4557778777654 35444432110 0 0111 1234567788999999999
Q ss_pred cCCCCchhhh-hhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHH
Q 048389 444 VGGSFGAGNY-AMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEA 515 (566)
Q Consensus 444 ~g~~~Ggg~~-am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 515 (566)
-|.++|||.. ++ ..|+++|-+++.++. .++.+....+.+. +.... ..++. .
T Consensus 169 nG~a~GGG~~Lal-----acD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rl-----------iG~~~----A~ell-l 227 (327)
T PLN02921 169 AGYAVGGGHILHM-----VCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARL-----------VGQKK----AREMW-F 227 (327)
T ss_pred CCEEecHHHHHHH-----hCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHH-----------hCHHH----HHHHH-H
Confidence 9999999874 33 368998888777765 2222222222110 00000 01110 0
Q ss_pred HHhhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 516 YEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 516 ~~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
.-+..++..+.+.|+||+|+++.++.+....+.+.+..+
T Consensus 228 tG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~ 266 (327)
T PLN02921 228 LARFYTASEALKMGLVNTVVPLDELEGETVKWCREILRN 266 (327)
T ss_pred cCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHHHHHHcc
Confidence 011257778889999999999988777666666555543
No 175
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=96.38 E-value=0.059 Score=55.41 Aligned_cols=158 Identities=15% Similarity=0.120 Sum_probs=87.9
Q ss_pred EEEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcC-----CCCCCCccccc-------cC-----chhhHH
Q 048389 128 CMFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDS-----GGAYLPKQAEV-------FP-----DKENFG 189 (566)
Q Consensus 128 v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~ds-----gGarl~~~~~~-------~~-----~~~~~~ 189 (566)
+.|.-|.+.. .=+++..-.+.+..+++.+... .+-+|.|.-+ +|+.+.+-... .. ....+.
T Consensus 19 ~~itlnrp~~-~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (275)
T PLN02664 19 FHLNLNRPSQ-RNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKI 97 (275)
T ss_pred EEEEECCCCc-cCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhhHHHHHHHH
Confidence 3344555554 3488999999999998877644 4666666543 33433211000 00 000000
Q ss_pred HHHH-HHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------c---c-HHHHHhhhccc------
Q 048389 190 RIFY-NQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------A---G-PPLVKAATGEE------ 251 (566)
Q Consensus 190 ~i~~-~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~---G-P~vv~~~~ge~------ 251 (566)
..+. ....+.....|+|+.|-|.|+|||..+...||++|+. +++++.+ . | ...+....|..
T Consensus 98 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ 176 (275)
T PLN02664 98 KFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCS-EDAFFSVKEVDLAITADLGTLQRLPSIVGYGNAMELA 176 (275)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEec-CCCEeccHHHhhCCCCCccHHHHHHHHhCHHHHHHHH
Confidence 0111 1122334478999999999999999999999998875 4566544 1 1 11111222211
Q ss_pred ccccCCCcccccccccCcceEEEcchhHHHHHHHHHHH
Q 048389 252 ISAEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIK 289 (566)
Q Consensus 252 v~~e~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls 289 (566)
++.+.+.+.+.+ ..|++|.+++++++..+.++++..
T Consensus 177 ltg~~~~a~eA~--~~GLv~~vv~~~~~l~~~~~~~a~ 212 (275)
T PLN02664 177 LTGRRFSGSEAK--ELGLVSRVFGSKEDLDEGVRLIAE 212 (275)
T ss_pred HhCCCCCHHHHH--HcCCCceeeCChhHHHHHHHHHHH
Confidence 133444454555 489999999754444444444443
No 176
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=96.37 E-value=0.055 Score=54.96 Aligned_cols=161 Identities=16% Similarity=0.140 Sum_probs=90.0
Q ss_pred CCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcCC-----CCCCCcccccc--Cc--h-hhHHHHH
Q 048389 124 HGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDSG-----GAYLPKQAEVF--PD--K-ENFGRIF 192 (566)
Q Consensus 124 ~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~dsg-----Garl~~~~~~~--~~--~-~~~~~i~ 192 (566)
+|.-..|.-|.+. +.-++.....+.+..+++.+.+. .+-+|.|.-+| |+.+.+-.... .. . ...-+.+
T Consensus 6 ~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 84 (255)
T PRK06563 6 RGHVLLIGLDRPA-KRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPW 84 (255)
T ss_pred ECCEEEEEECCcc-cccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhhHHH
Confidence 3433334445554 33488899999999999877654 45556665433 33332100000 00 0 0011112
Q ss_pred HHHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------c---c-HHHHHhhhcc----c--cccc
Q 048389 193 YNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------A---G-PPLVKAATGE----E--ISAE 255 (566)
Q Consensus 193 ~~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~---G-P~vv~~~~ge----~--v~~e 255 (566)
. ..+....+|+|++|-|.|+|||..+...||++|+.+ ++++.+ . | ...+...+|. + ++.+
T Consensus 85 ~--~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~-~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~ 161 (255)
T PRK06563 85 G--TVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAAD-NTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGD 161 (255)
T ss_pred H--HHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecC-CCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHHcCC
Confidence 1 124445789999999999999999988999988764 566543 1 1 1111112221 1 1333
Q ss_pred CCCcccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 256 DLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 256 ~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
.+.+.+.+ .-|++|.+++++ +..+.+.++...+
T Consensus 162 ~~~a~eA~--~~Glv~~vv~~~-~l~~~a~~~a~~l 194 (255)
T PRK06563 162 EFDAQEAL--RLGLVQEVVPPG-EQLERAIELAERI 194 (255)
T ss_pred CcCHHHHH--HcCCCcEeeCHH-HHHHHHHHHHHHH
Confidence 44444455 479999999764 4555555555443
No 177
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=96.37 E-value=0.036 Score=56.17 Aligned_cols=149 Identities=15% Similarity=0.131 Sum_probs=83.5
Q ss_pred EEEEecCccccccCChHHHHHHHHHHHHHHhCC-CcEEEEEcCC-----CCCCCccccccC-c-hhhHHHHHHHHHHHcC
Q 048389 129 MFVANDPTVKGGTYFPITIKKHLRAQEIAAQCK-LPCIYLVDSG-----GAYLPKQAEVFP-D-KENFGRIFYNQAIMSA 200 (566)
Q Consensus 129 ~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~-lPlV~l~dsg-----Garl~~~~~~~~-~-~~~~~~i~~~~a~ls~ 200 (566)
.|.-|.+. +.-+++....+.+..+++.+.... +-+|.|.-++ |..+.+-..... . ...+..++. .+..
T Consensus 12 ~itlnrp~-~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~---~l~~ 87 (248)
T PRK06072 12 IVTMSRPD-KLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIR---EIRF 87 (248)
T ss_pred EEEECCcc-cccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHHH---HHHh
Confidence 34444444 345899999999999998877554 4455554432 222211000000 0 001112222 2344
Q ss_pred CCcCEEEEEeccccccccccccCCCeeEEEecceeEE-------ecc----HHHHHh----------hhcccccccCCCc
Q 048389 201 EGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIF-------LAG----PPLVKA----------ATGEEISAEDLGG 259 (566)
Q Consensus 201 ~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~-------~~G----P~vv~~----------~~ge~v~~e~lGg 259 (566)
...|+|+.|-|.|+|||..+...||++|+.+ ++.++ +.. +..+.. .+|+.++ +
T Consensus 88 ~~kPvIaav~G~a~GgG~~lal~cD~~ia~~-~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~~a~~lll~g~~~~-----a 161 (248)
T PRK06072 88 SDKIYISAINGVTAGACIGIALSTDFKFASR-DVKFVTAFQRLGLASDTGVAYFLLKLTGQRFYEILVLGGEFT-----A 161 (248)
T ss_pred CCCCEEEEECCeeehHHHHHHHhCCEEEEcC-CCEEecchhhcCcCCCchHHHHHHHHhhHHHHHHHHhCCccC-----H
Confidence 4689999999999999999888999988764 55443 221 101111 2344444 3
Q ss_pred ccccccccCcceEEEcchhHHHHHHHHHHH
Q 048389 260 AAVHCKTSGVSDYFAQDELHGLSLGRNIIK 289 (566)
Q Consensus 260 a~~h~~~sG~~d~v~~de~~a~~~~r~~ls 289 (566)
.+.+ .-|++|.+.+..+++.+.++++.+
T Consensus 162 ~eA~--~~Glv~~~~~~~~~a~~~a~~la~ 189 (248)
T PRK06072 162 EEAE--RWGLLKISEDPLSDAEEMANRISN 189 (248)
T ss_pred HHHH--HCCCccccchHHHHHHHHHHHHHh
Confidence 3444 479999643334556666666554
No 178
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=96.35 E-value=0.059 Score=54.94 Aligned_cols=154 Identities=21% Similarity=0.236 Sum_probs=86.8
Q ss_pred EEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcCC-----CCCCCcccc----ccC-ch---hhHHHHHHHH
Q 048389 130 FVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDSG-----GAYLPKQAE----VFP-DK---ENFGRIFYNQ 195 (566)
Q Consensus 130 v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~dsg-----Garl~~~~~----~~~-~~---~~~~~i~~~~ 195 (566)
|.-|.+..+ -++...-.+.+..+++.+... .+-+|.|.-.| |..+.+-.. ... .. ..+.+++.
T Consensus 17 itlnrp~~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-- 93 (262)
T PRK05995 17 VTLNRPDVR-NAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLR-- 93 (262)
T ss_pred EEEcCcccc-cCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHH--
Confidence 344445433 388999999999999887654 45566665433 333321000 000 00 01122222
Q ss_pred HHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEec----------cHHHHHhhhccc------ccccCCCc
Q 048389 196 AIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLA----------GPPLVKAATGEE------ISAEDLGG 259 (566)
Q Consensus 196 a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~----------GP~vv~~~~ge~------v~~e~lGg 259 (566)
.+.....|+|++|-|.|+|||.-++..||++|+.+ ++++++. |...+-..+|.. ++.+.+.+
T Consensus 94 -~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~-~a~f~~pe~~~Gl~p~~g~~~l~~~vg~~~a~~l~l~g~~~~a 171 (262)
T PRK05995 94 -AIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAAD-HAVFCLSEVRLGLIPATISPYVIRAMGERAARRYFLTAERFDA 171 (262)
T ss_pred -HHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeC-CCEEeCcccccccCccchHHHHHHHhCHHHHHHHHHcCCccCH
Confidence 34445789999999999999999988999988754 5655431 111111112211 12233444
Q ss_pred ccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 260 AAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 260 a~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
.+.+ ..|++|.+++++ +..+.+.++...+
T Consensus 172 ~eA~--~~Glv~~vv~~~-~l~~~a~~~a~~l 200 (262)
T PRK05995 172 AEAL--RLGLVHEVVPAE-ALDAKVDELLAAL 200 (262)
T ss_pred HHHH--HcCCCCeecCHH-HHHHHHHHHHHHH
Confidence 4445 479999999643 4555565555444
No 179
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=96.34 E-value=0.028 Score=57.87 Aligned_cols=164 Identities=16% Similarity=0.177 Sum_probs=92.0
Q ss_pred ECCEEEEEEEecCccccccCChHHHHHHHHHHHHHHh-CCCcEEEEEcC-----CCCCCCcccc-----ccCchhhHHHH
Q 048389 123 VHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQ-CKLPCIYLVDS-----GGAYLPKQAE-----VFPDKENFGRI 191 (566)
Q Consensus 123 I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~-~~lPlV~l~ds-----gGarl~~~~~-----~~~~~~~~~~i 191 (566)
++|.-..|.-|++. ..-++.......+..+++.+.+ ..+-+|.|.-. +|+.+.+-.. .......+.+.
T Consensus 23 ~~~~v~~itlnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~ 101 (277)
T PRK08258 23 VDDGVATITLNRPE-RKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRM 101 (277)
T ss_pred EECCEEEEEeCCcc-cccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHH
Confidence 44433444444444 4457888888888888887764 34555666432 3333321100 00000111111
Q ss_pred HH-HHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEE-------eccHH-----HHHhhhccc------c
Q 048389 192 FY-NQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIF-------LAGPP-----LVKAATGEE------I 252 (566)
Q Consensus 192 ~~-~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~-------~~GP~-----vv~~~~ge~------v 252 (566)
+. ....+....+|+|++|-|.|+|||..++..||++|+.+ +++++ +.+|. .+....|.. +
T Consensus 102 ~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~-~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~l~l 180 (277)
T PRK08258 102 TGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTP-SAKTAFLFTRVGLAGADMGACALLPRIIGQGRASELLY 180 (277)
T ss_pred HHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecC-CCEEeccccccCcCCCCchHHHHHHHHhCHHHHHHHHH
Confidence 11 11223445789999999999999999988999988764 55553 32111 222222211 1
Q ss_pred cccCCCcccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 253 SAEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 253 ~~e~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
+.+.+.+.+.+ .-|++|.++++ ++..+.+.++...+
T Consensus 181 tg~~~~a~eA~--~~Glv~~vv~~-~~l~~~a~~~a~~l 216 (277)
T PRK08258 181 TGRSMSAEEGE--RWGFFNRLVEP-EELLAEAQALARRL 216 (277)
T ss_pred cCCCCCHHHHH--HcCCCcEecCH-HHHHHHHHHHHHHH
Confidence 33344444455 48999999975 45667777776655
No 180
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=96.33 E-value=0.2 Score=51.14 Aligned_cols=157 Identities=13% Similarity=0.021 Sum_probs=93.4
Q ss_pred CccCHHHHHHHHHHHHHHhc-CCCcEEEEEecC-CCCCchHH-Hhc------chHHHHHHHHHHHHcCCCCEEEEEcCCC
Q 048389 377 GILFHESALKGAHFIELCTQ-RKIPLVFLQNIT-GFMVGSRS-EAN------GIAKAGAKMVMAVSCAKVPKVTIIVGGS 447 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~-~~iPlV~l~dt~-G~~~g~~~-E~~------g~~~~~a~~~~a~~~a~vP~isvi~g~~ 447 (566)
.+++.+....+...++.++. ..+-+|.|.-.+ .|..|.+- +.. ........++..+.....|+|+.|-|.+
T Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a 105 (258)
T PRK06190 26 NALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGAA 105 (258)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 67899999999998887754 456677776533 23333221 100 0011234567788899999999999999
Q ss_pred Cchhhh-hhccCCCCCCEEEEecCcee-------eccCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHHhh
Q 048389 448 FGAGNY-AMCGRAYSPNFMFLWPNARI-------SVMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEKE 519 (566)
Q Consensus 448 ~Ggg~~-am~~~~~~~d~~~A~p~A~i-------~vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 519 (566)
+|||.- ++ ..|+++|-+++++ |+.++-+....+.+. +... ...++.- --+.
T Consensus 106 ~GgG~~lal-----acD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~-----------vG~~----~a~~l~l-tg~~ 164 (258)
T PRK06190 106 VTGGLELAL-----ACDILIASERARFADTHARVGILPGWGLSVRLPQK-----------VGIG----RARRMSL-TGDF 164 (258)
T ss_pred ecHHHHHHH-----hCCEEEEeCCCEEECcccccCcCCCccHHHHHHHH-----------hCHH----HHHHHHH-hCCc
Confidence 999864 33 3577776655554 444443333332210 0010 0011110 0112
Q ss_pred CCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 520 GNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 520 ~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
.++..+.+.|+||.|+++.++.+...+..+.+..+
T Consensus 165 ~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~ 199 (258)
T PRK06190 165 LDAADALRAGLVTEVVPHDELLPRARRLAASIAGN 199 (258)
T ss_pred cCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcC
Confidence 47888889999999999887766665555555443
No 181
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=96.33 E-value=0.19 Score=53.61 Aligned_cols=143 Identities=13% Similarity=0.064 Sum_probs=88.0
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC--CCCCchH-HH-----------hcchHHHHHHHHHHHHcCCCCEEE
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT--GFMVGSR-SE-----------ANGIAKAGAKMVMAVSCAKVPKVT 441 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~--G~~~g~~-~E-----------~~g~~~~~a~~~~a~~~a~vP~is 441 (566)
.+++.+....+..+++.++ ...+-+|+|.-.+ -|..|.+ .| .......+-.++..+..+..|+|+
T Consensus 50 NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVIA 129 (360)
T TIGR03200 50 NSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVIC 129 (360)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 5788999989988887554 5678888887765 2544442 11 111122233566778889999999
Q ss_pred EEcCCCCchhhh-hhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHH
Q 048389 442 IIVGGSFGAGNY-AMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVV 513 (566)
Q Consensus 442 vi~g~~~Ggg~~-am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 513 (566)
.|-|.|+|||.- ++ .+|+++|.++|+++. ...-+....+.+. +.... +. .-+.
T Consensus 130 AVnG~AiGGGleLAL-----aCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprl-----------vG~~r--A~-~lll 190 (360)
T TIGR03200 130 RVNGMRIGGGQEIGM-----AADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLM-----------IGCEQ--AM-VSGT 190 (360)
T ss_pred EECCEeeeHHHHHHH-----hCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHh-----------hCHHH--HH-HHHH
Confidence 999999999764 44 358888887766665 3222222222211 01110 00 0010
Q ss_pred HHHHhhCCHHHHHhCcccceecCchhh
Q 048389 514 EAYEKEGNAYYSTARLWDDGIIDPADT 540 (566)
Q Consensus 514 ~~~~~~~~~~~aa~~g~iD~II~p~~t 540 (566)
. -+..++..+.+.|+||+|+++.+.
T Consensus 191 t--Ge~~sA~EA~~~GLVd~VVp~~~~ 215 (360)
T TIGR03200 191 L--CEPWSAHKAKRLGIIMDVVPALKV 215 (360)
T ss_pred h--CCcCcHHHHHHcCChheecCchhc
Confidence 0 112577888999999999998665
No 182
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=96.29 E-value=0.21 Score=50.66 Aligned_cols=140 Identities=16% Similarity=0.217 Sum_probs=84.6
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC-CCCCchH-HHh-----cchHHHHHHHHHHHHcCCCCEEEEEcCCCC
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT-GFMVGSR-SEA-----NGIAKAGAKMVMAVSCAKVPKVTIIVGGSF 448 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~-G~~~g~~-~E~-----~g~~~~~a~~~~a~~~a~vP~isvi~g~~~ 448 (566)
.+++.+....+.+.++.++ ...+-+|.|.-.+ .|..|.+ .|. ....+....++..+....+|+|+.|-|.++
T Consensus 22 Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 101 (251)
T TIGR03189 22 NIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPILVAVRGQCL 101 (251)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCeee
Confidence 5788999999998888765 4556677776543 2333332 111 112333445677888999999999999999
Q ss_pred chhhh-hhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHH-hh
Q 048389 449 GAGNY-AMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYE-KE 519 (566)
Q Consensus 449 Ggg~~-am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 519 (566)
|||.- ++ ..|+++|.+++++++ ..+ +....+.+. +.... . .++. +. +.
T Consensus 102 GgG~~lal-----~cD~~ia~~~a~f~~pe~~~Gl~p~-~~~~~l~~~-----------vg~~~---a-~~l~--ltg~~ 158 (251)
T TIGR03189 102 GGGLEVAA-----AGNLMFAAPDAKLGQPEIVLGVFAP-AASCLLPER-----------MGRVA---A-EDLL--YSGRS 158 (251)
T ss_pred eHHHHHHH-----hCCEEEEcCCCEEeCchhhcCCCCC-chHHHHHHH-----------hCHHH---H-HHHH--HcCCC
Confidence 98764 44 358888877766554 333 222222110 11110 0 1110 11 12
Q ss_pred CCHHHHHhCcccceecCchh
Q 048389 520 GNAYYSTARLWDDGIIDPAD 539 (566)
Q Consensus 520 ~~~~~aa~~g~iD~II~p~~ 539 (566)
.++..+.+.|++|+|+++.+
T Consensus 159 ~~a~eA~~~Glv~~v~~~~~ 178 (251)
T TIGR03189 159 IDGAEGARIGLANAVAEDPE 178 (251)
T ss_pred CCHHHHHHCCCcceecCcHH
Confidence 57778889999999998654
No 183
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=96.29 E-value=0.05 Score=53.27 Aligned_cols=137 Identities=18% Similarity=0.141 Sum_probs=83.1
Q ss_pred HHHHHHHHHHH--HhcCCCcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhh-hhccCC
Q 048389 383 SALKGAHFIEL--CTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNY-AMCGRA 459 (566)
Q Consensus 383 ~a~K~ar~i~l--~~~~~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~-am~~~~ 459 (566)
.+..+...+.+ ++...-||.+.+||||- ....|-.+.+.+...+-|+.|+++|.+.+.|++ +|++.
T Consensus 40 ~a~~i~aqll~Lea~~~~k~I~lyINSpGG----------~V~aG~AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~- 108 (200)
T COG0740 40 MANLIVAQLLFLEAEDPDKDIYLYINSPGG----------SVTAGLAIYDTMQFIKPPVSTICMGQAASMGSVLLMAGD- 108 (200)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEeCCCc----------ccchhHHHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCC-
Confidence 34444443333 23457899999999994 555677788899999999999999988877654 67662
Q ss_pred CCCCEEEEecCceeeccCHHHHH-----HHH-hhhhh---------hhhhhcCCCCchHHHHHHHHHHHHHHHhhCCHHH
Q 048389 460 YSPNFMFLWPNARISVMGGAQAA-----GVL-SQVEK---------DKKKKQGIEWTKQEEEMFKAKVVEAYEKEGNAYY 524 (566)
Q Consensus 460 ~~~d~~~A~p~A~i~vmg~e~aa-----~i~-~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 524 (566)
..-.|+.|++++-+=.|.+.+ .+- +..+. ..+++-|++ .+ .+.+.+ ++ +...+|..
T Consensus 109 --~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~--~e---~i~~d~-dr-d~~msa~e 179 (200)
T COG0740 109 --KGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQT--LE---KIEKDT-DR-DTWMSAEE 179 (200)
T ss_pred --CCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--HH---HHHHhh-cc-cccCCHHH
Confidence 333588999988665444211 111 00000 012222222 11 121111 11 22368999
Q ss_pred HHhCcccceecCchh
Q 048389 525 STARLWDDGIIDPAD 539 (566)
Q Consensus 525 aa~~g~iD~II~p~~ 539 (566)
+.+.|+||.|+...+
T Consensus 180 A~~yGLiD~V~~~~~ 194 (200)
T COG0740 180 AKEYGLIDKVIESRE 194 (200)
T ss_pred HHHcCCcceeccccc
Confidence 999999999998753
No 184
>PLN02600 enoyl-CoA hydratase
Probab=96.27 E-value=0.051 Score=55.13 Aligned_cols=156 Identities=17% Similarity=0.226 Sum_probs=87.1
Q ss_pred EEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcC------CCCCCCccccc-cCchhhHHHHHH-HHHHHcCC
Q 048389 131 VANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDS------GGAYLPKQAEV-FPDKENFGRIFY-NQAIMSAE 201 (566)
Q Consensus 131 ~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~ds------gGarl~~~~~~-~~~~~~~~~i~~-~~a~ls~~ 201 (566)
.-|.+... =++...-.+-+.++++.+.+. .+-+|.|.-. +|+.+.+-... ......+...+. ....+...
T Consensus 9 tlnrp~~~-Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 87 (251)
T PLN02600 9 RLDRPEAK-NAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEAL 87 (251)
T ss_pred EEcCCccc-CCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhC
Confidence 34444433 378888888888888776654 4556666432 23333210000 000001111111 12234445
Q ss_pred CcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------c----cHHHHHhhhccc------ccccCCCcccccc
Q 048389 202 GIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------A----GPPLVKAATGEE------ISAEDLGGAAVHC 264 (566)
Q Consensus 202 ~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~----GP~vv~~~~ge~------v~~e~lGga~~h~ 264 (566)
..|+|+.|-|.|+|||..+...||++|+.+ ++++++ . |...+....|.. ++.+.+.+.+.+
T Consensus 88 ~kPvIAav~G~a~GgG~~lala~D~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~- 165 (251)
T PLN02600 88 SIPTIAVVEGAALGGGLELALSCDLRICGE-EAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAA- 165 (251)
T ss_pred CCCEEEEecCeecchhHHHHHhCCEEEeeC-CCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHHHH-
Confidence 789999999999999999988999998765 565544 1 111222222211 133444455556
Q ss_pred cccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 265 KTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 265 ~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
..|++|.+++++ +..+.+.++...+
T Consensus 166 -~~Glv~~vv~~~-~~~~~a~~~a~~l 190 (251)
T PLN02600 166 -SMGLVNYCVPAG-EAYEKALELAQEI 190 (251)
T ss_pred -HcCCCcEeeChh-HHHHHHHHHHHHH
Confidence 479999999754 4555555555444
No 185
>PLN02888 enoyl-CoA hydratase
Probab=96.23 E-value=0.075 Score=54.41 Aligned_cols=159 Identities=16% Similarity=0.139 Sum_probs=89.3
Q ss_pred CEEEEEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcC-----CCCCCCccccccCc-h-hhHHHHHHHHH
Q 048389 125 GRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDS-----GGAYLPKQAEVFPD-K-ENFGRIFYNQA 196 (566)
Q Consensus 125 Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~ds-----gGarl~~~~~~~~~-~-~~~~~i~~~~a 196 (566)
|.-..|.-|.+.. --++...-...+..+++.+.+. .+-+|.|.-. +|+.+.+-.+.... . ....+.+.
T Consensus 18 ~~v~~itlnrp~~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~--- 93 (265)
T PLN02888 18 NGIATITINRPKA-LNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVA--- 93 (265)
T ss_pred CCEEEEEEcCCCc-ccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHHH---
Confidence 3333344455443 3478888889999888877654 4555655432 23333211000000 0 00112222
Q ss_pred HHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEec-----------cHHHHHhhhccc------ccccCCCc
Q 048389 197 IMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLA-----------GPPLVKAATGEE------ISAEDLGG 259 (566)
Q Consensus 197 ~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~-----------GP~vv~~~~ge~------v~~e~lGg 259 (566)
.+....+|+|++|-|.|+|||..++..||++|+.+ ++.+++. +...+...+|.. ++.+.+.+
T Consensus 94 ~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~-~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a 172 (265)
T PLN02888 94 QMERCRKPIIGAINGFAITAGFEIALACDILVASR-GAKFIDTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTA 172 (265)
T ss_pred HHHhCCCCEEEEECCeeechHHHHHHhCCEEEecC-CCEecCccccccCCCCccHhhHHHHHhCHHHHHHHHHhCCccCH
Confidence 24445789999999999999999988999988754 5655331 111122222211 12233334
Q ss_pred ccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 260 AAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 260 a~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
.+-+ .-|++|.+++++ +..+.++++...+
T Consensus 173 ~eA~--~~Glv~~vv~~~-~l~~~a~~~a~~l 201 (265)
T PLN02888 173 ETAE--RWGLVNHVVEES-ELLKKAREVAEAI 201 (265)
T ss_pred HHHH--HcCCccEeeChH-HHHHHHHHHHHHH
Confidence 4445 489999999765 5667777766655
No 186
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=96.22 E-value=0.07 Score=54.66 Aligned_cols=153 Identities=16% Similarity=0.128 Sum_probs=87.3
Q ss_pred EEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcCC-----CCCCCccccccCc---hhh-HHHHHHHHHHH
Q 048389 129 MFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDSG-----GAYLPKQAEVFPD---KEN-FGRIFYNQAIM 198 (566)
Q Consensus 129 ~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~dsg-----Garl~~~~~~~~~---~~~-~~~i~~~~a~l 198 (566)
.|.-|++.. .-+++..-...+..+++.+... .+-+|.|.-.+ |..+.+-...... ... +.........+
T Consensus 24 ~itlnrp~~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l 102 (268)
T PRK07327 24 EIVLNGPGA-LNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNV 102 (268)
T ss_pred EEEEcCCCc-cCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHH
Confidence 344555543 3478888888888888877654 45556664432 3333210000000 000 11111112223
Q ss_pred cCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------c-------------cHH-HHHh-hhcccccccC
Q 048389 199 SAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------A-------------GPP-LVKA-ATGEEISAED 256 (566)
Q Consensus 199 s~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~-------------GP~-vv~~-~~ge~v~~e~ 256 (566)
.....|+|++|-|.|+|||..+...||++|+.+ ++++++ . |+. +.+. .+|+.++
T Consensus 103 ~~~~kPvIAav~G~a~GgG~~lalacD~ria~~-~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~--- 178 (268)
T PRK07327 103 INCDKPIVSAIHGPAVGAGLVAALLADISIAAK-DARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVS--- 178 (268)
T ss_pred HcCCCCEEEEEcCeeeehhhHHHHhCCEEEecC-CCEEeCcccccCCCCCcchhhHHHHHhCHHHHHHHHHcCCccC---
Confidence 345789999999999999999988999988764 566543 2 111 1111 1344444
Q ss_pred CCcccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 257 LGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 257 lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
+.+.+ .-|++|.++++ ++..+.+.++...|
T Consensus 179 --a~eA~--~~Glv~~vv~~-~~l~~~a~~~a~~l 208 (268)
T PRK07327 179 --GEEAE--RIGLVSLAVDD-DELLPKALEVAERL 208 (268)
T ss_pred --HHHHH--HcCCcceecCH-HHHHHHHHHHHHHH
Confidence 44455 47999999975 44666666666555
No 187
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=96.22 E-value=0.014 Score=54.79 Aligned_cols=91 Identities=20% Similarity=0.170 Sum_probs=66.3
Q ss_pred cccCChHHHHHHHHHHHHHHhCC--CcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEecccccc
Q 048389 139 GGTYFPITIKKHLRAQEIAAQCK--LPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAG 216 (566)
Q Consensus 139 gGs~g~~~~~K~~r~~~lA~~~~--lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG 216 (566)
.|.+.+...+.+.+.++.+.+.. -++|...+|+|.... ....+...+..+ ..|+++++.|.|.++
T Consensus 5 ~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~----------~~~~i~~~l~~~---~kpvva~~~g~~~s~ 71 (161)
T cd00394 5 NGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVD----------AGMNIVDALQAS---RKPVIAYVGGQAASA 71 (161)
T ss_pred EeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCCcCHH----------HHHHHHHHHHHh---CCCEEEEECChhHHH
Confidence 46677788888999998887654 455566788775331 122344444333 479999999999999
Q ss_pred ccccccCCCeeEEEecceeEEeccHHH
Q 048389 217 GAYIPAMADESVMVKGNGTIFLAGPPL 243 (566)
Q Consensus 217 ~ay~~a~~d~vi~v~~~a~i~~~GP~v 243 (566)
+.+++..||.+++ .|++.+.+.||..
T Consensus 72 g~~la~~~d~~~~-~~~a~~~~~g~~~ 97 (161)
T cd00394 72 GYYIATAANKIVM-APGTRVGSHGPIG 97 (161)
T ss_pred HHHHHhCCCEEEE-CCCCEEEEeeeEE
Confidence 9888888998776 6789999998754
No 188
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=96.19 E-value=0.028 Score=55.55 Aligned_cols=86 Identities=22% Similarity=0.162 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHhC-CCcEEEE-EcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEecccccccccccc
Q 048389 145 ITIKKHLRAQEIAAQC-KLPCIYL-VDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAYIPA 222 (566)
Q Consensus 145 ~~~~K~~r~~~lA~~~-~lPlV~l-~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG~ay~~a 222 (566)
...+-+.+.++.+.+. ++-.|.| .+|+|..+... .++...+..+...+.|+|+.+-|.|.|+|.+++.
T Consensus 21 ~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~----------~~~~~~l~~~~~~~kpVia~v~g~a~s~gy~la~ 90 (211)
T cd07019 21 VGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTAS----------EVIRAELAAARAAGKPVVVSAGGAAASGGYWIST 90 (211)
T ss_pred cCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHH----------HHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHH
Confidence 3456677777777666 6666665 78888755321 1122222334445789999999999999999999
Q ss_pred CCCeeEEEecceeEEeccH
Q 048389 223 MADESVMVKGNGTIFLAGP 241 (566)
Q Consensus 223 ~~d~vi~v~~~a~i~~~GP 241 (566)
.||++++ .+++.++..|.
T Consensus 91 ~aD~i~a-~~~a~~gsiGv 108 (211)
T cd07019 91 PANYIVA-NPSTLTGSIGI 108 (211)
T ss_pred hCCEEEE-cCCCEEEEeEE
Confidence 9999876 56788876664
No 189
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=96.19 E-value=0.18 Score=51.25 Aligned_cols=158 Identities=11% Similarity=0.013 Sum_probs=88.9
Q ss_pred CccCHHHHHHHHHHHHHHhc-CCCcEEEEEecC-CCCCchHHHh-c---c--hHHH-HHHHHHHHHcCCCCEEEEEcCCC
Q 048389 377 GILFHESALKGAHFIELCTQ-RKIPLVFLQNIT-GFMVGSRSEA-N---G--IAKA-GAKMVMAVSCAKVPKVTIIVGGS 447 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~-~~iPlV~l~dt~-G~~~g~~~E~-~---g--~~~~-~a~~~~a~~~a~vP~isvi~g~~ 447 (566)
.+++.+....+.+.++..++ ..+=+|+|.-.+ -|..|.+-.. . . .... ...+.........|+|+.|-|.+
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a 104 (254)
T PRK08259 25 NAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDGPMGPSRMRLSKPVIAAVSGYA 104 (254)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhhcchhhhHHhcCCCCEEEEECCEE
Confidence 67999999999998887654 445566665433 2333332111 0 0 0000 01112222367899999999999
Q ss_pred CchhhhhhccCCCCCCEEEEecCceeeccC------HH-HHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHHhhC
Q 048389 448 FGAGNYAMCGRAYSPNFMFLWPNARISVMG------GA-QAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEKEG 520 (566)
Q Consensus 448 ~Ggg~~am~~~~~~~d~~~A~p~A~i~vmg------~e-~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 520 (566)
+|||.--.. ..|+++|.++++++... |. +....+.+. +.... + ++-+.. -+..
T Consensus 105 ~GgG~~lal----acD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-----------iG~~~--a-~~lll~--g~~~ 164 (254)
T PRK08259 105 VAGGLELAL----WCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRL-----------IGHSR--A-MDLILT--GRPV 164 (254)
T ss_pred EhHHHHHHH----hCCEEEecCCCEecCcccccCCCCCccHHHHHHHH-----------hCHHH--H-HHHHHc--CCcc
Confidence 998864222 36999999888776421 22 211112110 00100 0 011100 1124
Q ss_pred CHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 521 NAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 521 ~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
++..+.+.|+||+|+++.++-+......+.+...
T Consensus 165 ~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 198 (254)
T PRK08259 165 DADEALAIGLANRVVPKGQARAAAEELAAELAAF 198 (254)
T ss_pred CHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhC
Confidence 7778889999999999988776666555555443
No 190
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=96.19 E-value=0.045 Score=55.71 Aligned_cols=163 Identities=16% Similarity=0.189 Sum_probs=90.8
Q ss_pred CCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcCC------CCCCCcccccc---C--chhhHHHH
Q 048389 124 HGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDSG------GAYLPKQAEVF---P--DKENFGRI 191 (566)
Q Consensus 124 ~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~dsg------Garl~~~~~~~---~--~~~~~~~i 191 (566)
+|.-..|.-|++.. .-++...-.+-+.++++.+.+. .+-+|.|.-++ |..+.+-.... . ....+.+.
T Consensus 10 ~~~v~~itlnrp~~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 88 (260)
T PRK05980 10 RDGIALLTLNRPEK-LNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRR 88 (260)
T ss_pred ECCEEEEEECCccc-ccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHH
Confidence 34333444455543 3478888999999999887754 45566554433 22221100000 0 01111111
Q ss_pred HH-HHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------c----cHHHHHhhhccc------cc
Q 048389 192 FY-NQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------A----GPPLVKAATGEE------IS 253 (566)
Q Consensus 192 ~~-~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~----GP~vv~~~~ge~------v~ 253 (566)
+. ....+....+|+|+.|-|.|+|||..++..||++|+. +++++++ . |...+...+|.. ++
T Consensus 89 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~ 167 (260)
T PRK05980 89 GQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIAS-ERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLT 167 (260)
T ss_pred HHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEec-CCCEecCcccccCCCCCchHhhHHHhhcCHHHHHHHHHc
Confidence 11 1123444578999999999999999998899998875 4565543 1 111122222211 12
Q ss_pred ccCCCcccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 254 AEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 254 ~e~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
.+.+.+.+.+ .-|++|.+++++ +..+.+.++...+
T Consensus 168 g~~~~a~eA~--~~Glv~~vv~~~-~l~~~a~~~a~~l 202 (260)
T PRK05980 168 GDAFSAERAL--EIGLVNAVVPHE-ELLPAARALARRI 202 (260)
T ss_pred CCccCHHHHH--HcCCCCcccCHH-HHHHHHHHHHHHH
Confidence 3334444555 479999999764 5666666666544
No 191
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=96.19 E-value=0.26 Score=49.77 Aligned_cols=94 Identities=22% Similarity=0.248 Sum_probs=63.9
Q ss_pred CccCHHHHHHHHHHHHHHhcCCCcEEEEEecC-CCCCchHH----HhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchh
Q 048389 377 GILFHESALKGAHFIELCTQRKIPLVFLQNIT-GFMVGSRS----EANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAG 451 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~~~iPlV~l~dt~-G~~~g~~~----E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg 451 (566)
.+++.+....+.++++.++...+-+|.|.-.+ .|..|.+- ..........+++..+.....|+|+.|-|.++|||
T Consensus 22 Nal~~~~~~~l~~al~~~~~~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG 101 (243)
T PRK07854 22 NALNAELCEELREAVRKAVDESARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVIAAINGPAIGAG 101 (243)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEEEEecCcccccH
Confidence 68899999999888887765577777775433 22222221 11122233456778888899999999999999998
Q ss_pred hh-hhccCCCCCCEEEEecCceeec
Q 048389 452 NY-AMCGRAYSPNFMFLWPNARISV 475 (566)
Q Consensus 452 ~~-am~~~~~~~d~~~A~p~A~i~v 475 (566)
.. ++ ..|+++|.+++++++
T Consensus 102 ~~lal-----~cD~~ia~~~a~f~~ 121 (243)
T PRK07854 102 LQLAM-----ACDLRVVAPEAYFQF 121 (243)
T ss_pred HHHHH-----hCCEEEEcCCCEEec
Confidence 64 33 358888877766654
No 192
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=96.18 E-value=0.31 Score=49.92 Aligned_cols=168 Identities=11% Similarity=0.062 Sum_probs=96.3
Q ss_pred ECCeEEEEEEeC-----CccCHHHHHHHHHHHHHHhc-CCCcEEEEEecC-CCCCchHH-Hhcc--------------hH
Q 048389 365 IFGQPVGIIGNN-----GILFHESALKGAHFIELCTQ-RKIPLVFLQNIT-GFMVGSRS-EANG--------------IA 422 (566)
Q Consensus 365 I~G~~Vgvvan~-----G~l~~~~a~K~ar~i~l~~~-~~iPlV~l~dt~-G~~~g~~~-E~~g--------------~~ 422 (566)
+++..|.++-.| .+++.+....+.+.++.... ..+-+|.|.-.+ .|..|.+- |... ..
T Consensus 11 ~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 90 (272)
T PRK06210 11 VADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFV 90 (272)
T ss_pred ECCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccccccccchhhh
Confidence 444245555433 67889999998888886653 455566666543 24333321 1100 00
Q ss_pred H----HHHHHHHHHHcCCCCEEEEEcCCCCchhhhhhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhh
Q 048389 423 K----AGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKD 491 (566)
Q Consensus 423 ~----~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~ 491 (566)
. ..-+++..+.....|+|+.|-|.|+|||..-.+ .+|+++|-++++++. ...-+....+.+.
T Consensus 91 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal----a~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~--- 163 (272)
T PRK06210 91 GNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHAL----MCDVRFAADGAKFTTAFARRGLIAEHGISWILPRL--- 163 (272)
T ss_pred hhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHH----hCCEEEEeCCCEEechHHhcCCCCCCchhhhhHhh---
Confidence 0 112345678889999999999999999864322 369999998887764 2221222112110
Q ss_pred hhhhcCCCCchHHHHHHHHHHHHHHHhhCCHHHHHhCcccceecCchhhHHHHHHHHHHhh
Q 048389 492 KKKKQGIEWTKQEEEMFKAKVVEAYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAAL 552 (566)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~ 552 (566)
+.... .++-+.. -+..++..+.+.|+||.|+++.++.+...+..+.+.
T Consensus 164 --------ig~~~---a~~l~lt--g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~ 211 (272)
T PRK06210 164 --------VGHAN---ALDLLLS--ARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLA 211 (272)
T ss_pred --------hCHHH---HHHHHHc--CCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHH
Confidence 01100 0011100 112477788899999999999877666555555444
No 193
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=96.18 E-value=0.23 Score=51.48 Aligned_cols=156 Identities=8% Similarity=-0.007 Sum_probs=90.5
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC-CCCCchHH-Hh---c-----------------------chH----H
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT-GFMVGSRS-EA---N-----------------------GIA----K 423 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~-G~~~g~~~-E~---~-----------------------g~~----~ 423 (566)
.+++.+....+.+.++.++ ..++=+|.|.-.+ .|..|.+- |. . ... .
T Consensus 26 Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (288)
T PRK08290 26 NAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQHPTLWWDGATKPGVEQRYAREWE 105 (288)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccccccccccccccccccchhhHHHHHHH
Confidence 6788899998988887654 4567777775433 22222211 10 0 000 1
Q ss_pred HHHHHHHHHHcCCCCEEEEEcCCCCchhhh-hhccCCCCCCEEEEecCce-------eeccCHHHHHHHHhhhhhhhhhh
Q 048389 424 AGAKMVMAVSCAKVPKVTIIVGGSFGAGNY-AMCGRAYSPNFMFLWPNAR-------ISVMGGAQAAGVLSQVEKDKKKK 495 (566)
Q Consensus 424 ~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~-am~~~~~~~d~~~A~p~A~-------i~vmg~e~aa~i~~~~~~~~~~~ 495 (566)
..-.++..+....+|+|+.|-|.|+|||.- ++ .+|++||-++++ +|+.+ ........ .
T Consensus 106 ~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lal-----acD~ria~e~a~f~~pe~~lGl~~---~~~~~l~~------~ 171 (288)
T PRK08290 106 VYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAW-----VCDLIVASDDAFFSDPVVRMGIPG---VEYFAHPW------E 171 (288)
T ss_pred HHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHH-----hCCEEEeeCCCEecCcccccCcCc---chHHHHHH------H
Confidence 112344567889999999999999999864 43 358887776654 44422 11111100 0
Q ss_pred cCCCCchHHHHHHHHHHHHHHHhhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCCC
Q 048389 496 QGIEWTKQEEEMFKAKVVEAYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNRP 555 (566)
Q Consensus 496 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~~ 555 (566)
+.... .++-+.. -+..++..+.+.|+||+|+++.++.+......+.+...+
T Consensus 172 ----iG~~~---A~~lllt--G~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~ 222 (288)
T PRK08290 172 ----LGPRK---AKELLFT--GDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMP 222 (288)
T ss_pred ----hhHHH---HHHHHHc--CCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCC
Confidence 00000 0011100 123578888899999999999888877776666665543
No 194
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=96.17 E-value=0.059 Score=56.07 Aligned_cols=150 Identities=15% Similarity=0.134 Sum_probs=84.8
Q ss_pred EEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcC-----CCCCCCcccccc-----------------C-ch
Q 048389 130 FVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDS-----GGAYLPKQAEVF-----------------P-DK 185 (566)
Q Consensus 130 v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~ds-----gGarl~~~~~~~-----------------~-~~ 185 (566)
|.-|++. ..-+++..-..-+..+++.+.+. .+-+|.|.-+ +|+.+.+-...+ . ..
T Consensus 17 itlnrp~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (296)
T PRK08260 17 ITLNRPD-KLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPSD 95 (296)
T ss_pred EEeCCCc-ccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccccccccccccchhH
Confidence 3334444 45688998899999999887654 4556666442 344443210000 0 00
Q ss_pred hhHHHHHH-HHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEec-----------cHHHHHh-------
Q 048389 186 ENFGRIFY-NQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLA-----------GPPLVKA------- 246 (566)
Q Consensus 186 ~~~~~i~~-~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~-----------GP~vv~~------- 246 (566)
..+...+. ....+....+|+|++|-|.|+|||..++..||++|+.+ ++++++. |...+..
T Consensus 96 ~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~-~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A 174 (296)
T PRK08260 96 DGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLAST-AARFGFVFGRRGIVPEAASSWFLPRLVGLQTA 174 (296)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeC-CCEEecchhhcCcCCCcchhhhHHHhhCHHHH
Confidence 01111111 11223445789999999999999999999999988754 5666431 1111111
Q ss_pred ----hhcccccccCCCcccccccccCcceEEEcchhHHHHHHHHHHH
Q 048389 247 ----ATGEEISAEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIK 289 (566)
Q Consensus 247 ----~~ge~v~~e~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls 289 (566)
.+|+.+++ .+.+ .-|++|.+++++ +....+.++..
T Consensus 175 ~~llltg~~~~a-----~eA~--~~GLv~~vv~~~-~l~~~a~~~a~ 213 (296)
T PRK08260 175 LEWVYSGRVFDA-----QEAL--DGGLVRSVHPPD-ELLPAARALAR 213 (296)
T ss_pred HHHHHcCCccCH-----HHHH--HCCCceeecCHH-HHHHHHHHHHH
Confidence 13444443 3344 589999999754 44444444443
No 195
>PRK08139 enoyl-CoA hydratase; Validated
Probab=96.16 E-value=0.07 Score=54.63 Aligned_cols=158 Identities=16% Similarity=0.129 Sum_probs=86.8
Q ss_pred EEEEEecCccccccCChHHHHHHHHHHHHHHhCC-CcEEEEEcC-----CCCCCCccccccCchhhHHHHHH----HHHH
Q 048389 128 CMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCK-LPCIYLVDS-----GGAYLPKQAEVFPDKENFGRIFY----NQAI 197 (566)
Q Consensus 128 v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~-lPlV~l~ds-----gGarl~~~~~~~~~~~~~~~i~~----~~a~ 197 (566)
..|.-|++. ..-++...-.+.+..+++.+.... +-+|.|.-. +|+.+.+-.. ......+.+.+. ....
T Consensus 22 ~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~ 99 (266)
T PRK08139 22 ATLTLNRPQ-AFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRA-ARGLAYFRALFARCSRVMQA 99 (266)
T ss_pred EEEEeCCcc-cccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhc-ccchhHHHHHHHHHHHHHHH
Confidence 334444444 334788888899999888776553 455555432 2333321000 000001111111 1112
Q ss_pred HcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------cc--HH-HHHhhhccc------ccccCCCccc
Q 048389 198 MSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------AG--PP-LVKAATGEE------ISAEDLGGAA 261 (566)
Q Consensus 198 ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~G--P~-vv~~~~ge~------v~~e~lGga~ 261 (566)
+.....|+|++|-|+|+|||..+...||++|+. +++++.+ .. +. .+....|.. ++.+.+.+.+
T Consensus 100 l~~~~kPvIAav~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~~~~~l~r~vG~~~A~~l~ltg~~~~a~e 178 (266)
T PRK08139 100 IVALPQPVIARVHGIATAAGCQLVASCDLAVAA-DTARFAVPGVNIGLFCSTPMVALSRNVPRKQAMEMLLTGEFIDAAT 178 (266)
T ss_pred HHhCCCCEEEEECceeeHHHHHHHHhCCEEEEe-CCCEEeCcccCcCCCCCccHHHHHHHhCHHHHHHHHHcCCccCHHH
Confidence 334468999999999999999998899998875 4565543 10 10 111111210 1223333444
Q ss_pred ccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 262 VHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 262 ~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
.+ .-|++|.+++++ +..+.++++...|
T Consensus 179 A~--~~GLv~~vv~~~-~l~~~a~~~a~~l 205 (266)
T PRK08139 179 AR--EWGLVNRVVPAD-ALDAAVARLAAVI 205 (266)
T ss_pred HH--HcCCccEeeChh-HHHHHHHHHHHHH
Confidence 45 589999999854 4556666666544
No 196
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=96.16 E-value=0.042 Score=55.90 Aligned_cols=163 Identities=15% Similarity=0.111 Sum_probs=88.8
Q ss_pred ECCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhCC-CcEEEEEc-----CCCCCCCccccccCc-hhhHHHHHHHH
Q 048389 123 VHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCK-LPCIYLVD-----SGGAYLPKQAEVFPD-KENFGRIFYNQ 195 (566)
Q Consensus 123 I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~-lPlV~l~d-----sgGarl~~~~~~~~~-~~~~~~i~~~~ 195 (566)
++|.-..|.-|.+. +.=+++..-...+..+++.+.... +-+|.|.- |+|+.+.+-...-.. ...........
T Consensus 9 ~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 87 (254)
T PRK08259 9 RNGPVTTVILNRPE-VRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDGPMGP 87 (254)
T ss_pred EECCEEEEEecCCc-cccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhhcchhhh
Confidence 34433334444444 334889999999999998876554 34555543 233333210000000 00000000011
Q ss_pred HHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEec----------c-HHHHHhhhccc------ccccCCC
Q 048389 196 AIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLA----------G-PPLVKAATGEE------ISAEDLG 258 (566)
Q Consensus 196 a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~----------G-P~vv~~~~ge~------v~~e~lG 258 (566)
..+. ...|+|+.|-|.|+|||..++..||++|+.+ ++++++. | ...+....|.. ++.+.+.
T Consensus 88 ~~~~-~~kPvIaav~G~a~GgG~~lalacD~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~ 165 (254)
T PRK08259 88 SRMR-LSKPVIAAVSGYAVAGGLELALWCDLRVAEE-DAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRPVD 165 (254)
T ss_pred HHhc-CCCCEEEEECCEEEhHHHHHHHhCCEEEecC-CCEecCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccC
Confidence 2232 4689999999999999999988899988764 5655431 1 11121122211 1223333
Q ss_pred cccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 259 GAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 259 ga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
+.+.+ ..|++|.+++++ +..+.++++..-|
T Consensus 166 a~eA~--~~Glv~~vv~~~-~l~~~a~~~a~~l 195 (254)
T PRK08259 166 ADEAL--AIGLANRVVPKG-QARAAAEELAAEL 195 (254)
T ss_pred HHHHH--HcCCCCEeeChh-HHHHHHHHHHHHH
Confidence 44455 489999999764 5666666666544
No 197
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=96.15 E-value=0.075 Score=54.63 Aligned_cols=164 Identities=16% Similarity=0.225 Sum_probs=91.8
Q ss_pred ECCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhCC-CcEEEEEcC------CCCCCCcccc-ccCchhhHHH--HH
Q 048389 123 VHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCK-LPCIYLVDS------GGAYLPKQAE-VFPDKENFGR--IF 192 (566)
Q Consensus 123 I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~-lPlV~l~ds------gGarl~~~~~-~~~~~~~~~~--i~ 192 (566)
++|.-+.|.-|++..+ -+++....+.+..+++.+.... +-+|.|.-+ +|+.+.+-.. ......+... ..
T Consensus 19 ~~~~v~~itlnrp~~~-Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 97 (273)
T PRK07396 19 SADGIAKITINRPEVR-NAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVL 97 (273)
T ss_pred ecCCEEEEEEcCCccc-CCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhhHHH
Confidence 4444444455555543 4899999999999998877554 455555432 3333322100 0000000111 11
Q ss_pred HHHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEeccHH-----------HHHhhhccc------cccc
Q 048389 193 YNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPP-----------LVKAATGEE------ISAE 255 (566)
Q Consensus 193 ~~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~GP~-----------vv~~~~ge~------v~~e 255 (566)
.....+....+|+|+.|-|.|+|||.-++..||++|+.+ ++++.+..+. .+....|.. ++.+
T Consensus 98 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~-~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a~~l~ltg~ 176 (273)
T PRK07396 98 DLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAAD-NAIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFLCR 176 (273)
T ss_pred HHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeC-CcEEecccccccccCCchHHHHHHHHhhHHHHHHHHHhCC
Confidence 111224445789999999999999999988999998764 5666542211 111112211 1233
Q ss_pred CCCcccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 256 DLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 256 ~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
.+.+.+.+ .-|++|.++++ ++..+.+.++..-|
T Consensus 177 ~~~A~eA~--~~GLv~~vv~~-~~l~~~a~~~a~~l 209 (273)
T PRK07396 177 QYDAQEAL--DMGLVNTVVPL-ADLEKETVRWCREM 209 (273)
T ss_pred CcCHHHHH--HcCCcCeecCH-HHHHHHHHHHHHHH
Confidence 44444455 47999999975 35556665555444
No 198
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.031 Score=56.16 Aligned_cols=150 Identities=22% Similarity=0.203 Sum_probs=93.4
Q ss_pred CccCHHHHH-HHHHHHHH-HhcCCCcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhhh
Q 048389 377 GILFHESAL-KGAHFIEL-CTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYA 454 (566)
Q Consensus 377 G~l~~~~a~-K~ar~i~l-~~~~~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~a 454 (566)
+.++.+.+. -+++++-| .+...-||..++|+||-.+ -.+-.+.+++...+-|+-|+-+|.+++-|++-
T Consensus 99 ~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~v----------taglAIYDtMq~ik~~V~Tic~G~Aas~aalL 168 (275)
T KOG0840|consen 99 QPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSV----------TAGLAIYDTMQYIKPDVSTICVGLAASMAALL 168 (275)
T ss_pred CcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCcc----------chhhhHHHHHHhhCCCceeeehhhHHhHHHHH
Confidence 556665554 45566655 3567899999999999754 34446678888899999999999999988876
Q ss_pred hccCCCCCCEEEEecCceeeccCHHHHHH-----HHhhhhh----------hhhhhcCCCCchHHHHHHHHHHHHHHHhh
Q 048389 455 MCGRAYSPNFMFLWPNARISVMGGAQAAG-----VLSQVEK----------DKKKKQGIEWTKQEEEMFKAKVVEAYEKE 519 (566)
Q Consensus 455 m~~~~~~~d~~~A~p~A~i~vmg~e~aa~-----i~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 519 (566)
++... .-..++.|+++|-+=-|-+.+. |.-+.++ ..++.-|++ .+ ++.+.+.. ...
T Consensus 169 LaaG~--KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~--~e---~i~~d~dR--d~f 239 (275)
T KOG0840|consen 169 LAAGA--KGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQP--LE---VIEKDMDR--DRF 239 (275)
T ss_pred HhcCC--CcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCc--HH---HHHhhhcc--ccc
Confidence 55422 2346899999998755543321 1111100 011111211 11 11111110 123
Q ss_pred CCHHHHHhCcccceecC-chhhHHHHH
Q 048389 520 GNAYYSTARLWDDGIID-PADTRKIIG 545 (566)
Q Consensus 520 ~~~~~aa~~g~iD~II~-p~~tR~~L~ 545 (566)
.+|..+.+.|.||.||+ |-++|.+..
T Consensus 240 msa~EA~eyGliD~v~~~p~~~~~~~~ 266 (275)
T KOG0840|consen 240 MSAEEAKEYGLIDKVIDHPPETRVDDG 266 (275)
T ss_pred CCHHHHHHhcchhhhhcCCcccccccc
Confidence 78999999999999999 766665543
No 199
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=96.15 E-value=0.048 Score=55.92 Aligned_cols=160 Identities=16% Similarity=0.132 Sum_probs=88.6
Q ss_pred ECCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhCC-CcEEEEEcCC-----CCCCCcccc--c--cCch---hhHH
Q 048389 123 VHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCK-LPCIYLVDSG-----GAYLPKQAE--V--FPDK---ENFG 189 (566)
Q Consensus 123 I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~-lPlV~l~dsg-----Garl~~~~~--~--~~~~---~~~~ 189 (566)
++|..|+.+-.|.--+.-++.....+.+..+++.+.+.. +-+|.|.-+| |+.+.+-.. . .... ..+.
T Consensus 11 ~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 90 (272)
T PRK06210 11 VADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFV 90 (272)
T ss_pred ECCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccccccccchhhh
Confidence 454234444433323456788888899999998776543 4455554432 333321000 0 0000 0000
Q ss_pred -----HHHHHHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEec--------------------cHHHH
Q 048389 190 -----RIFYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLA--------------------GPPLV 244 (566)
Q Consensus 190 -----~i~~~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~--------------------GP~vv 244 (566)
........+....+|+|++|-|.|+|||..++..||++|+. +++++++. |+...
T Consensus 91 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a 169 (272)
T PRK06210 91 GNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAA-DGAKFTTAFARRGLIAEHGISWILPRLVGHANA 169 (272)
T ss_pred hhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEe-CCCEEechHHhcCCCCCCchhhhhHhhhCHHHH
Confidence 00011123434578999999999999999999999998876 45665421 11111
Q ss_pred Hh--hhcccccccCCCcccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 245 KA--ATGEEISAEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 245 ~~--~~ge~v~~e~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
.. .+|+.++++ +.+ .-|++|.+++++ +..+.+.++..-+
T Consensus 170 ~~l~ltg~~~~a~-----eA~--~~Glv~~vv~~~-~l~~~a~~~a~~i 210 (272)
T PRK06210 170 LDLLLSARTFYAE-----EAL--RLGLVNRVVPPD-ELMERTLAYAEDL 210 (272)
T ss_pred HHHHHcCCccCHH-----HHH--HcCCcceecCHH-HHHHHHHHHHHHH
Confidence 11 244555543 344 489999999764 4556666655433
No 200
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=96.13 E-value=0.22 Score=50.83 Aligned_cols=156 Identities=10% Similarity=-0.016 Sum_probs=88.1
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC-CCCCchHH-Hhc----c-hH-------HHHHHHHHHHHcCCCCEEE
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT-GFMVGSRS-EAN----G-IA-------KAGAKMVMAVSCAKVPKVT 441 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~-G~~~g~~~-E~~----g-~~-------~~~a~~~~a~~~a~vP~is 441 (566)
.+++.+..+.+.+.++.++ ...+-+|.|.-.+ -|..|.+- |.. + .. ..... +..+.....|+|+
T Consensus 27 Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~kpvIa 105 (263)
T PRK07799 27 NALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDA-LLKGRRLTKPLIA 105 (263)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhhhhhhhHHHH-HHHHhcCCCCEEE
Confidence 6789999999999888775 3456667775443 23333321 100 0 00 11111 2345678999999
Q ss_pred EEcCCCCchhhh-hhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHH
Q 048389 442 IIVGGSFGAGNY-AMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVV 513 (566)
Q Consensus 442 vi~g~~~Ggg~~-am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 513 (566)
.|-|.++|||.- ++ ..|+++|.++++++. ...-+....+.+. +... ...++.
T Consensus 106 av~G~a~GgG~~lal-----acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~-----------vG~~----~a~~l~ 165 (263)
T PRK07799 106 AVEGPAIAGGTEILQ-----GTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQ-----------IPYT----VACDLL 165 (263)
T ss_pred EECCeEeccHHHHHH-----hCCEEEecCCCEecCcccccCcCCCccHHHHHHHH-----------hCHH----HHHHHH
Confidence 999999998764 33 358888887776554 3222222112110 0000 001110
Q ss_pred HHHHhhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 514 EAYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 514 ~~~~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
= .-+..++..+.+.|+||+|+++.++-+......+.+...
T Consensus 166 l-tg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~ 205 (263)
T PRK07799 166 L-TGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINAN 205 (263)
T ss_pred H-cCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhc
Confidence 0 011257778889999999999977655554444444433
No 201
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=96.11 E-value=0.068 Score=54.53 Aligned_cols=162 Identities=17% Similarity=0.141 Sum_probs=92.4
Q ss_pred CCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcCC------CCCCCccccccCchhhHH-HHHHHH
Q 048389 124 HGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDSG------GAYLPKQAEVFPDKENFG-RIFYNQ 195 (566)
Q Consensus 124 ~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~dsg------Garl~~~~~~~~~~~~~~-~i~~~~ 195 (566)
+|.-..|.-|++. . -+++..-.+.+..+++.+... .+-+|.|.-++ |+.+.+-...-.....+. ..+..+
T Consensus 10 ~~~v~~itlnrp~-~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 87 (261)
T PRK03580 10 NGSILEITLDRPK-A-NAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGL 87 (261)
T ss_pred ECCEEEEEECCcc-c-cCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHH
Confidence 4433445555663 3 689999999999999877654 45556654333 233321000000000010 011122
Q ss_pred HHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------c----cHHHHHhhhccc------ccccCCC
Q 048389 196 AIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------A----GPPLVKAATGEE------ISAEDLG 258 (566)
Q Consensus 196 a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~----GP~vv~~~~ge~------v~~e~lG 258 (566)
..+....+|+|+.|-|.|+|||..+...||++|+. +++++++ . +...+-...|.. ++.+.+.
T Consensus 88 ~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~ 166 (261)
T PRK03580 88 TEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCA-DNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMD 166 (261)
T ss_pred HHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEec-CCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccC
Confidence 23444578999999999999999998899998875 4666543 1 111111122211 1334455
Q ss_pred cccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 259 GAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 259 ga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
+.+.+ .-|++|.++++ ++..+.+.++...+
T Consensus 167 a~eA~--~~Glv~~vv~~-~~l~~~a~~~a~~l 196 (261)
T PRK03580 167 AEEAL--RWGIVNRVVPQ-AELMDRARELAQQL 196 (261)
T ss_pred HHHHH--HcCCCcEecCH-hHHHHHHHHHHHHH
Confidence 55556 47999999975 45667777776555
No 202
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=96.11 E-value=0.032 Score=55.26 Aligned_cols=92 Identities=20% Similarity=0.148 Sum_probs=65.1
Q ss_pred cccCChHHHHHHHHHHHHHHhC-CCcEEEE-EcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEecccccc
Q 048389 139 GGTYFPITIKKHLRAQEIAAQC-KLPCIYL-VDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAG 216 (566)
Q Consensus 139 gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l-~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG 216 (566)
++.++......+.+.++.|.+. ++-.|.| .+|+|... .+...+...+.+++. +.|+|+.+-|.|.||
T Consensus 19 ~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~----------~~~~~l~~~l~~~~~-~KpViA~v~g~a~s~ 87 (214)
T cd07022 19 EASSGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEV----------AGVFELADAIRAARA-GKPIVAFVNGLAASA 87 (214)
T ss_pred cCCCCcccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcH----------HHHHHHHHHHHHHhc-CCCEEEEECCchhhH
Confidence 3446667778888888877654 5666665 67776432 112334445555665 789999999999999
Q ss_pred ccccccCCCeeEEEecceeEEeccHH
Q 048389 217 GAYIPAMADESVMVKGNGTIFLAGPP 242 (566)
Q Consensus 217 ~ay~~a~~d~vi~v~~~a~i~~~GP~ 242 (566)
|.|++..||.+++ .+++.++..|.-
T Consensus 88 gy~lA~~aD~i~a-~~~a~~g~iG~~ 112 (214)
T cd07022 88 AYWIASAADRIVV-TPTAGVGSIGVV 112 (214)
T ss_pred HHHHHhcCCEEEE-cCCCeEEeeeEE
Confidence 9999999999775 578887766643
No 203
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=96.10 E-value=0.14 Score=51.21 Aligned_cols=146 Identities=15% Similarity=0.103 Sum_probs=84.2
Q ss_pred HHHHHHHH-HHHHHh-cCCCcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhhh-hccC
Q 048389 382 ESALKGAH-FIELCT-QRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYA-MCGR 458 (566)
Q Consensus 382 ~~a~K~ar-~i~l~~-~~~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~a-m~~~ 458 (566)
+.+..+.. ++-+-. ..+-||-+.+|+||-.+- .-|-.|....+-.+.+++...+-|+.|+++|-+++.|++- +++.
T Consensus 52 ~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~-~G~~iG~v~~glaIyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~ 130 (222)
T PRK12552 52 DVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWY-TGDAIGFETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSAGT 130 (222)
T ss_pred hHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCcc-ccccccccccHHHHHHHHHhcCCCeEEEEEeehhhHHHHHHhCCC
Confidence 35555443 333332 346899999999996320 0122234555667788888899999999999999988764 4442
Q ss_pred CCCCCEEEEecCceeeccCHHH-----HHHHHhhh-hhh---------hhhhcCCCCchHHHHHHHHHHHHHHHhhCCHH
Q 048389 459 AYSPNFMFLWPNARISVMGGAQ-----AAGVLSQV-EKD---------KKKKQGIEWTKQEEEMFKAKVVEAYEKEGNAY 523 (566)
Q Consensus 459 ~~~~d~~~A~p~A~i~vmg~e~-----aa~i~~~~-~~~---------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 523 (566)
....+|+|++++-+=.|.+ +..+..+. +.. ..++-|+. .+ ++.+.+.. +...+|.
T Consensus 131 ---kg~R~alpns~iMIHqP~~~~~G~A~di~~~a~el~~~r~~l~~iya~~TG~~--~e---~I~~d~~r--d~wmsA~ 200 (222)
T PRK12552 131 ---KGQRASLPHATIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEILSRNTGQT--VE---KLSKDTDR--MFYLTPQ 200 (222)
T ss_pred ---CCceecCCCcEEEeccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HH---HHHHHhcC--CCcCCHH
Confidence 2235778888876544432 22221110 000 11111211 11 22222211 1137899
Q ss_pred HHHhCcccceecCch
Q 048389 524 YSTARLWDDGIIDPA 538 (566)
Q Consensus 524 ~aa~~g~iD~II~p~ 538 (566)
.+.+.|++|.|+.+.
T Consensus 201 EA~eyGliD~Ii~~~ 215 (222)
T PRK12552 201 EAKEYGLIDRVLESR 215 (222)
T ss_pred HHHHcCCCcEEeccC
Confidence 999999999999873
No 204
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.019 Score=61.98 Aligned_cols=141 Identities=21% Similarity=0.209 Sum_probs=97.4
Q ss_pred CCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhCC-CcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCC
Q 048389 124 HGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCK-LPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEG 202 (566)
Q Consensus 124 ~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~-lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~ 202 (566)
.+.+|+|+--| |.+++....-+.|.++.|.+.+ -.+|...||+|.++. ++ -++..+ .....
T Consensus 24 ~~~~v~vi~i~-----g~I~~~s~~~l~r~l~~A~~~~a~~vvl~ldTPGGl~~-------sm---~~iv~~---i~~s~ 85 (436)
T COG1030 24 AEKKVYVIEID-----GAIDPASADYLQRALQSAEEENAAAVVLELDTPGGLLD-------SM---RQIVRA---ILNSP 85 (436)
T ss_pred cCCeEEEEEec-----CccCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCchHH-------HH---HHHHHH---HHcCC
Confidence 66778888877 8999999999999999999999 888889999998651 22 334433 23347
Q ss_pred cCEEEEEecc---ccccccccccCCCeeEEEecceeEEeccHHHHH-----------hhh----------cccc------
Q 048389 203 IPQIALVLGS---CTAGGAYIPAMADESVMVKGNGTIFLAGPPLVK-----------AAT----------GEEI------ 252 (566)
Q Consensus 203 VP~isvv~G~---~~GG~ay~~a~~d~vi~v~~~a~i~~~GP~vv~-----------~~~----------ge~v------ 252 (566)
||++.+|.=+ |...|+|..-.||...|+ |.+.|+-+-|-.+. ... |++.
T Consensus 86 vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMA-PgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN~~~ae~~ 164 (436)
T COG1030 86 VPVIGYVVPDGARAASAGTYILMATHIAAMA-PGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRNPTWAERF 164 (436)
T ss_pred CCEEEEEcCCCcchhchhhHHHHhcChhhhC-CCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 9988888766 778889987779998886 45666654443322 000 1110
Q ss_pred --cccCCCcccccccccCcceEEEcchhHHHHHHH
Q 048389 253 --SAEDLGGAAVHCKTSGVSDYFAQDELHGLSLGR 285 (566)
Q Consensus 253 --~~e~lGga~~h~~~sG~~d~v~~de~~a~~~~r 285 (566)
.+-++...+-. +-|++|+++.|..|.++++.
T Consensus 165 v~~~~~l~a~eA~--~~~vid~iA~~~~ell~~~~ 197 (436)
T COG1030 165 VTENLSLTAEEAL--RQGVIDLIARDLNELLKKLD 197 (436)
T ss_pred hhhccCCChhHHH--hcCccccccCCHHHHHHHcc
Confidence 11234444444 46899999888777766553
No 205
>PRK08788 enoyl-CoA hydratase; Validated
Probab=96.07 E-value=0.29 Score=50.84 Aligned_cols=155 Identities=14% Similarity=0.081 Sum_probs=88.5
Q ss_pred CccCHHHHHHHHHHHHHHhc------CCCcEEEEEec-C-CCCCchHH-Hh---------cchHHHHHHH---HHHHH--
Q 048389 377 GILFHESALKGAHFIELCTQ------RKIPLVFLQNI-T-GFMVGSRS-EA---------NGIAKAGAKM---VMAVS-- 433 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~------~~iPlV~l~dt-~-G~~~g~~~-E~---------~g~~~~~a~~---~~a~~-- 433 (566)
.+++.+....+.+.++-+++ ..+-+|.|.-. + .|..|.+- +. ..+......+ +..+.
T Consensus 38 Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 117 (287)
T PRK08788 38 PCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHRG 117 (287)
T ss_pred CCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHh
Confidence 57888888888888886654 45566666554 2 24444321 10 0111111122 22222
Q ss_pred -cCCCCEEEEEcCCCCchhhh-hhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHH
Q 048389 434 -CAKVPKVTIIVGGSFGAGNY-AMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQE 504 (566)
Q Consensus 434 -~a~vP~isvi~g~~~Ggg~~-am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~ 504 (566)
....|+|+.|-|.|+|||.- ++ ..|+++|.++++++. ..+-+....+.+. +...
T Consensus 118 ~~~pkPvIAaV~G~a~GgG~~Lal-----acD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~~-----------vG~~- 180 (287)
T PRK08788 118 FGAGAISIALVQGDALGGGFEAAL-----SHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARR-----------VGPK- 180 (287)
T ss_pred cCCCCCEEEEECCeeehHHHHHHH-----hCCEEEecCCCEeeCchhhhCcCCCchHHHHHHHH-----------hhHH-
Confidence 67899999999999999864 44 358888888776664 2222222222110 0000
Q ss_pred HHHHHHHHHHHHH-hhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhC
Q 048389 505 EEMFKAKVVEAYE-KEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALN 553 (566)
Q Consensus 505 ~~~~~~~l~~~~~-~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~ 553 (566)
...++. +. +..++..+.+.|+||.|+++.+.-+...+..+.+..
T Consensus 181 ---~A~ell--ltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~ 225 (287)
T PRK08788 181 ---LAEELI--LSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKR 225 (287)
T ss_pred ---HHHHHH--HcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhc
Confidence 001110 11 125777888999999999998776666655555554
No 206
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=96.04 E-value=0.066 Score=54.71 Aligned_cols=163 Identities=14% Similarity=0.219 Sum_probs=89.2
Q ss_pred CCEEEEEEEecCccccccCCh-HHHHHHHHHHHHHHhC-CCcEEEEEcC-----CCCCCCcccccc------C-c-hhhH
Q 048389 124 HGRLCMFVANDPTVKGGTYFP-ITIKKHLRAQEIAAQC-KLPCIYLVDS-----GGAYLPKQAEVF------P-D-KENF 188 (566)
Q Consensus 124 ~Gr~v~v~a~D~tv~gGs~g~-~~~~K~~r~~~lA~~~-~lPlV~l~ds-----gGarl~~~~~~~------~-~-~~~~ 188 (566)
+|.-..|.-|++.. .-++.. .-.+.+..+++.+.+. .+-+|.|.-. +|+.+.+-.+.. + . ...+
T Consensus 10 ~~~v~~itlnrp~~-~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 88 (266)
T PRK09245 10 DGHIVTLTMNRPET-RNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPADIRQGY 88 (266)
T ss_pred ECCEEEEEECCccc-ccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccchhHHHHH
Confidence 44334444555543 336764 6667788887776654 4566666442 344332110000 0 0 0001
Q ss_pred HHHHH-HHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------c----cHHHHHhhhccc-----
Q 048389 189 GRIFY-NQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------A----GPPLVKAATGEE----- 251 (566)
Q Consensus 189 ~~i~~-~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~----GP~vv~~~~ge~----- 251 (566)
...+. ....+....+|+|+.|-|.|+|||..++..||++|+.+ ++++.+ . |...+....|..
T Consensus 89 ~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~-~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l 167 (266)
T PRK09245 89 RHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASE-TARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEM 167 (266)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecC-CCEEcccccccCcCCCcchhhhHHHHhhHHHHHHH
Confidence 11111 11223344689999999999999999988999988754 565543 1 111122222221
Q ss_pred -ccccCCCcccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 252 -ISAEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 252 -v~~e~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
++.+.+.+.+.+ .-|++|.+++++ +..+.++++...|
T Consensus 168 ~l~g~~~~a~eA~--~~Glv~~vv~~~-~l~~~a~~~a~~l 205 (266)
T PRK09245 168 AFTGDAIDAATAL--EWGLVSRVVPAD-QLLPAARALAERI 205 (266)
T ss_pred HHcCCCcCHHHHH--HcCCcceecCHH-HHHHHHHHHHHHH
Confidence 133444455556 489999999754 5566666666544
No 207
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=96.02 E-value=0.071 Score=55.31 Aligned_cols=158 Identities=16% Similarity=0.161 Sum_probs=88.9
Q ss_pred EEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcC-----CCCCCCccc--ccc-----------------Cc
Q 048389 130 FVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDS-----GGAYLPKQA--EVF-----------------PD 184 (566)
Q Consensus 130 v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~ds-----gGarl~~~~--~~~-----------------~~ 184 (566)
|.-|.+. ..-+++....+.+..+++.+... .+=+|.|.-+ .|+.+.+-. ... ..
T Consensus 17 ItlnrP~-~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (288)
T PRK08290 17 ITLNRPE-ARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQHPTLWWDGATKPG 95 (288)
T ss_pred EEecCcc-ccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccccccccccccccccccc
Confidence 3334433 34578888889999988877644 4556666432 344443210 000 00
Q ss_pred -hhhHH---HHH-HHHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEeccee-------EEeccHHH--HHhhhcc
Q 048389 185 -KENFG---RIF-YNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGT-------IFLAGPPL--VKAATGE 250 (566)
Q Consensus 185 -~~~~~---~i~-~~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~-------i~~~GP~v--v~~~~ge 250 (566)
...+. ..+ .....+....+|+|+.|-|.|+|||..++..||++|+.+ +++ +++.|... ....+|.
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e-~a~f~~pe~~lGl~~~~~~~l~~~iG~ 174 (288)
T PRK08290 96 VEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASD-DAFFSDPVVRMGIPGVEYFAHPWELGP 174 (288)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeC-CCEecCcccccCcCcchHHHHHHHhhH
Confidence 00000 111 111234445789999999999999999988999988764 454 44432110 1111221
Q ss_pred c------ccccCCCcccccccccCcceEEEcchhHHHHHHHHHHHhcc
Q 048389 251 E------ISAEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNLH 292 (566)
Q Consensus 251 ~------v~~e~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~Lp 292 (566)
. ++.+.+.+.+.+ .-|++|.++++ ++..+.++++...|-
T Consensus 175 ~~A~~llltG~~i~A~eA~--~~GLV~~vv~~-~~l~~~a~~~a~~la 219 (288)
T PRK08290 175 RKAKELLFTGDRLTADEAH--RLGMVNRVVPR-DELEAETLELARRIA 219 (288)
T ss_pred HHHHHHHHcCCCCCHHHHH--HCCCccEeeCH-HHHHHHHHHHHHHHH
Confidence 1 133344444455 48999999975 456777777776663
No 208
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=96.02 E-value=0.09 Score=54.86 Aligned_cols=161 Identities=22% Similarity=0.222 Sum_probs=91.3
Q ss_pred ECCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEc-----CCCCCCCcccccc--------------
Q 048389 123 VHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVD-----SGGAYLPKQAEVF-------------- 182 (566)
Q Consensus 123 I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~d-----sgGarl~~~~~~~-------------- 182 (566)
++|.-..|.-|.+. +--++.......+..+++.+... .+-+|.|.- |+|+.+.+-....
T Consensus 16 ~~~~V~~Itlnrp~-~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 94 (302)
T PRK08272 16 VTGRIARITLNRPE-KGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQ 94 (302)
T ss_pred eECCEEEEEecCcc-ccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccccccccccc
Confidence 34433333344443 44688899999999999888754 466666654 3344442210000
Q ss_pred ----------Cc------hhhHHHHHHHHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-----cc-
Q 048389 183 ----------PD------KENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-----AG- 240 (566)
Q Consensus 183 ----------~~------~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-----~G- 240 (566)
.. ...+.+++.. +....+|+|+.|-|.|+|||..++..||++|+.+ ++.+++ .|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~-~a~f~~pe~~~gg~ 170 (302)
T PRK08272 95 AVNHLPDDPWDPMIDYQMMSRFVRGFMS---LWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAAD-DAKIGYPPTRVWGV 170 (302)
T ss_pred cccccccccccchhhHHHHHHHHHHHHH---HHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeC-CCEecCcchhcccC
Confidence 00 0011122332 3345799999999999999999988999988764 565542 11
Q ss_pred -HH-HHHhhhccc------ccccCCCcccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 241 -PP-LVKAATGEE------ISAEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 241 -P~-vv~~~~ge~------v~~e~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
|. .....+|.. ++.+.+.+.+.+ .-|++|.++++ ++..+.+.++...+
T Consensus 171 ~~~~~~~~~vG~~~A~~llltG~~i~a~eA~--~~GLv~~vv~~-~~l~~~a~~la~~i 226 (302)
T PRK08272 171 PATGMWAYRLGPQRAKRLLFTGDCITGAQAA--EWGLAVEAVPP-EELDERTERLVERI 226 (302)
T ss_pred ChHHHHHHHhhHHHHHHHHHcCCccCHHHHH--HcCCCceecCH-HHHHHHHHHHHHHH
Confidence 11 111111211 133344454555 58999999974 44556666665544
No 209
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=96.00 E-value=0.34 Score=49.21 Aligned_cols=157 Identities=10% Similarity=0.020 Sum_probs=88.6
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC-CCCCchHHHh-c-c-hHHHHHHHHHH--HHcCCCCEEEEEcCCCCc
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT-GFMVGSRSEA-N-G-IAKAGAKMVMA--VSCAKVPKVTIIVGGSFG 449 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~-G~~~g~~~E~-~-g-~~~~~a~~~~a--~~~a~vP~isvi~g~~~G 449 (566)
.+++.+....+.+.++.++ ...+-+|.|.-.+ .|..|.+-.. . . ......+.+.. ......|+|+.|-|.++|
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~G 104 (254)
T PRK08252 25 NAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGLTERPPRKPLIAAVEGYALA 104 (254)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHHHHHHhcCCCCEEEEECCEEeh
Confidence 6789999999998888765 4567788776543 2333332111 0 0 00000111111 135789999999999999
Q ss_pred hhhh-hhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHHhhCC
Q 048389 450 AGNY-AMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEKEGN 521 (566)
Q Consensus 450 gg~~-am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 521 (566)
||.- +++ .|+++|.+++.++. ..+-+....+.+. +.... ..++.= .-+..+
T Consensus 105 gG~~lala-----cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-----------vg~~~----a~~l~l-~g~~~~ 163 (254)
T PRK08252 105 GGFELALA-----CDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRR-----------IPYHI----AMELAL-TGDMLT 163 (254)
T ss_pred HHHHHHHh-----CCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHH-----------cCHHH----HHHHHH-cCCccC
Confidence 8764 443 58888777666554 3332322222110 11110 011110 011257
Q ss_pred HHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 522 AYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 522 ~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
+..+.+.|+||.|+++.++-+...+..+.+...
T Consensus 164 a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~ 196 (254)
T PRK08252 164 AERAHELGLVNRLTEPGQALDAALELAERIAAN 196 (254)
T ss_pred HHHHHHcCCcceecCcchHHHHHHHHHHHHHhC
Confidence 778889999999999987766655555555443
No 210
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=96.00 E-value=0.069 Score=54.24 Aligned_cols=159 Identities=13% Similarity=0.184 Sum_probs=89.8
Q ss_pred CCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcC-----CCCCCCcccccc--CchhhH----HHH
Q 048389 124 HGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDS-----GGAYLPKQAEVF--PDKENF----GRI 191 (566)
Q Consensus 124 ~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~ds-----gGarl~~~~~~~--~~~~~~----~~i 191 (566)
+|.-..|.-|.+. . -+++....+.+..+++.+.+. .+-+|.|.-. +|+.+.+-...- .....+ .++
T Consensus 9 ~~~v~~itl~rp~-~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 86 (257)
T PRK07658 9 EDHVAVITLNHPP-A-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVT 86 (257)
T ss_pred eCCEEEEEECCCC-C-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHH
Confidence 3433334445554 3 789999999999999877654 4556666432 333332110000 000001 122
Q ss_pred HHHHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------c----cHHHHHhhhccc------ccc
Q 048389 192 FYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------A----GPPLVKAATGEE------ISA 254 (566)
Q Consensus 192 ~~~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~----GP~vv~~~~ge~------v~~ 254 (566)
+. .+.....|+|+.|-|.|+|||..++..||++|+. +++++++ . |...+....|.. ++.
T Consensus 87 ~~---~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g 162 (257)
T PRK07658 87 FE---RVEKFSKPVIAAIHGAALGGGLELAMSCHIRFAT-ESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTS 162 (257)
T ss_pred HH---HHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEec-CCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHHcC
Confidence 22 2444578999999999999999998889998876 4565533 1 111111112211 122
Q ss_pred cCCCcccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 255 EDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 255 e~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
+.+.+.+.+ ..|++|.++++ ++..+.+.++...+
T Consensus 163 ~~~~a~eA~--~~Glv~~vv~~-~~l~~~a~~~a~~l 196 (257)
T PRK07658 163 EPITGAEAL--KWGLVNGVFPE-ETLLDDAKKLAKKI 196 (257)
T ss_pred CCcCHHHHH--HcCCcCeecCh-hHHHHHHHHHHHHH
Confidence 333344455 48999999974 45566666666554
No 211
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=95.99 E-value=0.059 Score=54.57 Aligned_cols=156 Identities=16% Similarity=0.189 Sum_probs=86.2
Q ss_pred EEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcC-----CCCCCCcccccc--CchhhHHHHHHHHHHHcC
Q 048389 129 MFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDS-----GGAYLPKQAEVF--PDKENFGRIFYNQAIMSA 200 (566)
Q Consensus 129 ~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~ds-----gGarl~~~~~~~--~~~~~~~~i~~~~a~ls~ 200 (566)
.+.-|++.. --++.....+.+.++++.+.+. .+-+|.|.-+ +|+.+.+-...- .....+.........+..
T Consensus 15 ~itlnrp~~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 93 (249)
T PRK05870 15 LITVNDPDR-RNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVAS 93 (249)
T ss_pred EEEEcCCCc-cCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHHHHHHHHHHHh
Confidence 344455443 3478899999999999887654 4566666543 333332100000 000111111112223444
Q ss_pred CCcCEEEEEeccccccccccccCCCeeEEEecceeEEec-----------cHHHHHhhhccc------ccccCCCccccc
Q 048389 201 EGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLA-----------GPPLVKAATGEE------ISAEDLGGAAVH 263 (566)
Q Consensus 201 ~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~-----------GP~vv~~~~ge~------v~~e~lGga~~h 263 (566)
...|+|+.|-|.|+|||..++..||++|+. +++++.+. +...+....|.. ++.+.+.+.+.+
T Consensus 94 ~~kPvIaav~G~a~GgG~~lal~cD~ria~-~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~ 172 (249)
T PRK05870 94 CPLPTIAAVNGAAVGAGLNLALAADVRIAG-PKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAV 172 (249)
T ss_pred CCCCEEEEECCEeEchhHHHHHhCCEEEEc-CCCEEeCcccccCcCCCCcceeeHHhhhCHHHHHHHHHhCCccCHHHHH
Confidence 578999999999999999999999998875 45655421 000111111210 122334444555
Q ss_pred ccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 264 CKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 264 ~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
.-|++|.++ + +..+.++++...+
T Consensus 173 --~~Glv~~vv-~--~l~~~a~~~a~~l 195 (249)
T PRK05870 173 --RHGLALMVA-D--DPVAAALELAAGP 195 (249)
T ss_pred --HcCCHHHHH-h--hHHHHHHHHHHHH
Confidence 479999988 3 3445555555444
No 212
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=95.96 E-value=0.074 Score=54.19 Aligned_cols=160 Identities=16% Similarity=0.165 Sum_probs=86.9
Q ss_pred CCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhCC-CcEEEEEcCC-----CCCCCccccc-cCchhhHH-------
Q 048389 124 HGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCK-LPCIYLVDSG-----GAYLPKQAEV-FPDKENFG------- 189 (566)
Q Consensus 124 ~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~-lPlV~l~dsg-----Garl~~~~~~-~~~~~~~~------- 189 (566)
+|.-+.|.-|++. +.-+++....+.+..+++.+.+.. +-+|.|.-+| |+.+.+-... ........
T Consensus 10 ~~~v~~itlnrp~-~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (262)
T PRK07509 10 EDGIADVRLNRPD-KMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNA 88 (262)
T ss_pred eCCEEEEEecCcc-cccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhhhHHHH
Confidence 3433334444444 445899999999999998887654 5566664433 3322210000 00000000
Q ss_pred HHHHH-HHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEec-----------cHHHHHhhhccc------
Q 048389 190 RIFYN-QAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLA-----------GPPLVKAATGEE------ 251 (566)
Q Consensus 190 ~i~~~-~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~-----------GP~vv~~~~ge~------ 251 (566)
..+.. ...+.....|+|+.|-|.|+|||..+...||++|+. +++.+.+. |...+....|..
T Consensus 89 ~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~ 167 (262)
T PRK07509 89 NLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAA-PDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELT 167 (262)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEec-CCCEeecchhccCCCCCchHHHHHHHHhCHHHHHHHH
Confidence 01110 112334578999999999999999998899998876 45655441 111122222211
Q ss_pred ccccCCCcccccccccCcceEEEcch-hHHHHHHHHH
Q 048389 252 ISAEDLGGAAVHCKTSGVSDYFAQDE-LHGLSLGRNI 287 (566)
Q Consensus 252 v~~e~lGga~~h~~~sG~~d~v~~de-~~a~~~~r~~ 287 (566)
++.+.+.+.+.+ ..|++|.++++. +++.+.++++
T Consensus 168 ltg~~~~a~eA~--~~Glv~~vv~~~~~~a~~~a~~l 202 (262)
T PRK07509 168 YTARVFSAEEAL--ELGLVTHVSDDPLAAALALAREI 202 (262)
T ss_pred HcCCCcCHHHHH--HcCChhhhhchHHHHHHHHHHHH
Confidence 133344454555 489999998642 3333444444
No 213
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=95.94 E-value=0.076 Score=57.30 Aligned_cols=151 Identities=17% Similarity=0.186 Sum_probs=85.2
Q ss_pred ECCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcCC-----CCCCCccccccCchhhHHHHHHH--
Q 048389 123 VHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDSG-----GAYLPKQAEVFPDKENFGRIFYN-- 194 (566)
Q Consensus 123 I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~dsg-----Garl~~~~~~~~~~~~~~~i~~~-- 194 (566)
++|.-..|.-|++..+. ++.....+.+..+++.+... .+-+|.|.-+| |+.+.+-.............+..
T Consensus 17 ~~~~v~~ItLnrP~~~N-al~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 95 (379)
T PLN02874 17 EKGRVRVITLNRPRQLN-VISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYRMY 95 (379)
T ss_pred EECCEEEEEECCCcccc-CCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHHHHHHHHH
Confidence 45554555666666444 78888889999999877654 56666665433 23332100000000000111111
Q ss_pred --HHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------c---c-HHHHHhhhcc---c--ccccC
Q 048389 195 --QAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------A---G-PPLVKAATGE---E--ISAED 256 (566)
Q Consensus 195 --~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~---G-P~vv~~~~ge---~--v~~e~ 256 (566)
...+.....|+|++|-|.|+|||..+...||++|+.+ ++++.+ . | .-.+....|. + ++.+.
T Consensus 96 ~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~-~a~f~~pe~~iGl~p~~g~~~~L~rl~g~~a~~l~ltG~~ 174 (379)
T PLN02874 96 WLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTE-KTVFATPEASVGFHTDCGFSYILSRLPGHLGEYLALTGAR 174 (379)
T ss_pred HHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeC-CeEEeccccccCcCCChhHHHHHHhhhHHHHHHHHHcCCc
Confidence 1223345789999999999999999988899988764 565543 2 1 1111111111 1 13344
Q ss_pred CCcccccccccCcceEEEcch
Q 048389 257 LGGAAVHCKTSGVSDYFAQDE 277 (566)
Q Consensus 257 lGga~~h~~~sG~~d~v~~de 277 (566)
+.+.+.+ .-|++|.+++++
T Consensus 175 i~a~eA~--~~GLv~~vv~~~ 193 (379)
T PLN02874 175 LNGKEMV--ACGLATHFVPSE 193 (379)
T ss_pred ccHHHHH--HcCCccEEeCHH
Confidence 4455555 489999999753
No 214
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=95.90 E-value=0.1 Score=53.11 Aligned_cols=159 Identities=16% Similarity=0.142 Sum_probs=88.6
Q ss_pred EEEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcCC------CCCCCccccc-cCchhhHHHHHH-HHHHH
Q 048389 128 CMFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDSG------GAYLPKQAEV-FPDKENFGRIFY-NQAIM 198 (566)
Q Consensus 128 v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~dsg------Garl~~~~~~-~~~~~~~~~i~~-~~a~l 198 (566)
..|.-|++. +.-++.......+..+++.+... .+-+|.|.-++ |+.+.+-... ......+...+. ....+
T Consensus 18 ~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l 96 (256)
T PRK06143 18 ATLTIRNAG-SLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAV 96 (256)
T ss_pred EEEEEcCCc-ccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHH
Confidence 334444443 34578899999999999887754 44555554333 2222210000 000011111111 11223
Q ss_pred cCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEec----------cHHHHHhhhccc------ccccCCCcccc
Q 048389 199 SAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLA----------GPPLVKAATGEE------ISAEDLGGAAV 262 (566)
Q Consensus 199 s~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~----------GP~vv~~~~ge~------v~~e~lGga~~ 262 (566)
....+|+|+.|-|.|+|||.-++..||++|+.+ ++++.+. |...+...+|.. ++.+.+.+.+.
T Consensus 97 ~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~-~a~f~~pe~~~G~p~~~~~~~l~~~iG~~~a~~l~l~g~~~~a~eA 175 (256)
T PRK06143 97 RHFPVPVIARIPGWCLGGGLELAAACDLRIAAH-DAQFGMPEVRVGIPSVIHAALLPRLIGWARTRWLLLTGETIDAAQA 175 (256)
T ss_pred HhCCCCEEEEECCEEeehhHHHHHhCCEEEecC-CCEEeCCccccCCCCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHH
Confidence 345789999999999999999988999988764 5655431 111122222211 13334444445
Q ss_pred cccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 263 HCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 263 h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
+ .-|++|.++++ ++..+.+.++...+
T Consensus 176 ~--~~Glv~~vv~~-~~l~~~a~~~a~~l 201 (256)
T PRK06143 176 L--AWGLVDRVVPL-AELDAAVERLAASL 201 (256)
T ss_pred H--HCCCcCeecCH-HHHHHHHHHHHHHH
Confidence 5 47999999975 45666666666555
No 215
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=95.89 E-value=0.025 Score=55.69 Aligned_cols=89 Identities=18% Similarity=0.151 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHHHhC-CCcEEE-EEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEeccccccccccc
Q 048389 144 PITIKKHLRAQEIAAQC-KLPCIY-LVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAYIP 221 (566)
Q Consensus 144 ~~~~~K~~r~~~lA~~~-~lPlV~-l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG~ay~~ 221 (566)
+...+.+.+.++.+.+. ++-.|. -.+|+|..+.. ...+...+..++..+.|+++++-|.|.|+|.+++
T Consensus 16 ~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~----------~~~i~~~i~~~~~~~kpvia~v~g~~~s~g~~lA 85 (208)
T cd07023 16 GIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVA----------SEEIYREIRRLRKAKKPVVASMGDVAASGGYYIA 85 (208)
T ss_pred CCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHH----------HHHHHHHHHHHHhcCCcEEEEECCcchhHHHHHH
Confidence 66778888888877654 455544 47788864421 1122223334444478999999999999999998
Q ss_pred cCCCeeEEEecceeEEeccHHH
Q 048389 222 AMADESVMVKGNGTIFLAGPPL 243 (566)
Q Consensus 222 a~~d~vi~v~~~a~i~~~GP~v 243 (566)
..||.+++ .+++.++..|.-.
T Consensus 86 ~aaD~i~a-~~~s~~g~iG~~~ 106 (208)
T cd07023 86 AAADKIVA-NPTTITGSIGVIG 106 (208)
T ss_pred hhCCEEEE-CCCCeEEeCcEEE
Confidence 89999776 5678888777543
No 216
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=95.88 E-value=0.12 Score=53.25 Aligned_cols=159 Identities=11% Similarity=0.072 Sum_probs=89.5
Q ss_pred EEEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcCC-------CCCCCccccccCch---hhHHHHHH-HH
Q 048389 128 CMFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDSG-------GAYLPKQAEVFPDK---ENFGRIFY-NQ 195 (566)
Q Consensus 128 v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~dsg-------Garl~~~~~~~~~~---~~~~~i~~-~~ 195 (566)
|+++-.|.. .--++.......+.++++...+. .+-+|.|.-.+ |..+.+-.....+. ..+.+.+. .+
T Consensus 22 Va~itlnr~-~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 100 (278)
T PLN03214 22 IAVVWLAKE-PVNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFL 100 (278)
T ss_pred EEEEEECCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHH
Confidence 444444322 23689999999999999877755 35555554322 22222100000000 01111111 12
Q ss_pred HHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------ccHH-----HHHhhhccc------ccccCC
Q 048389 196 AIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------AGPP-----LVKAATGEE------ISAEDL 257 (566)
Q Consensus 196 a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~GP~-----vv~~~~ge~------v~~e~l 257 (566)
..+....+|+|+.|-|.|+|||..++..||++|+.+ ++++++ .-|. .+...+|.. ++.+.+
T Consensus 101 ~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~-~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a~~llltg~~~ 179 (278)
T PLN03214 101 VRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTT-EGTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESLLLRGRLV 179 (278)
T ss_pred HHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecC-CCEecCcHHHhCCCCCChhHHHHHHHhcCHHHHHHHHHcCCcc
Confidence 234455789999999999999999988999988754 565543 1111 122223321 133445
Q ss_pred CcccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 258 GGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 258 Gga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
.+.+.+ .-|++|.++++ ++..+.++++...|
T Consensus 180 ~a~eA~--~~Glv~~vv~~-~~l~~~a~~~a~~l 210 (278)
T PLN03214 180 RPAEAK--QLGLIDEVVPA-AALMEAAASAMERA 210 (278)
T ss_pred CHHHHH--HcCCCcEecCh-HHHHHHHHHHHHHH
Confidence 555555 48999999975 45566676666654
No 217
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=95.88 E-value=0.29 Score=49.59 Aligned_cols=94 Identities=14% Similarity=0.193 Sum_probs=63.8
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC-CCCCchHH-Hh--------cchHHHHHHHHHHHHcCCCCEEEEEcC
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT-GFMVGSRS-EA--------NGIAKAGAKMVMAVSCAKVPKVTIIVG 445 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~-G~~~g~~~-E~--------~g~~~~~a~~~~a~~~a~vP~isvi~g 445 (566)
.+++.+..+.+.++++.++ ...+-+|.|.-.+ .|..|.+- |. ....+...+++..+.....|+|+.|-|
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G 104 (249)
T PRK05870 25 NAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVNG 104 (249)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 6789999999999888765 4566777776543 23333321 11 111223344567788899999999999
Q ss_pred CCCchhhh-hhccCCCCCCEEEEecCceeec
Q 048389 446 GSFGAGNY-AMCGRAYSPNFMFLWPNARISV 475 (566)
Q Consensus 446 ~~~Ggg~~-am~~~~~~~d~~~A~p~A~i~v 475 (566)
.++|||.. ++ .+|+++|.+++++++
T Consensus 105 ~a~GgG~~lal-----~cD~ria~~~a~f~~ 130 (249)
T PRK05870 105 AAVGAGLNLAL-----AADVRIAGPKALFDA 130 (249)
T ss_pred EeEchhHHHHH-----hCCEEEEcCCCEEeC
Confidence 99999864 33 358888887776653
No 218
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=95.84 E-value=0.093 Score=53.99 Aligned_cols=160 Identities=18% Similarity=0.186 Sum_probs=90.6
Q ss_pred CCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEc-----CCCCCCCcccc-----cc--Cc--h---
Q 048389 124 HGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVD-----SGGAYLPKQAE-----VF--PD--K--- 185 (566)
Q Consensus 124 ~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~d-----sgGarl~~~~~-----~~--~~--~--- 185 (566)
+|.-..|.-|.+..+ -+++..-.+.+.++++.+.+. .+-+|.|.- |+|+.+.+-.. .. .. .
T Consensus 17 ~~~v~~itlnrp~~~-Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 95 (276)
T PRK05864 17 RPEIALITLNRPERM-NSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYALRSM 95 (276)
T ss_pred cCCEEEEEecCCccc-cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccchhHHHHHH
Confidence 443333444555433 488888888899888877654 455666643 23444432100 00 00 0
Q ss_pred hhHHHHHHHHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEE-------eccH-----HHHHhhhccc--
Q 048389 186 ENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIF-------LAGP-----PLVKAATGEE-- 251 (566)
Q Consensus 186 ~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~-------~~GP-----~vv~~~~ge~-- 251 (566)
..+.+++. .+....+|+|+.|-|.|+|||..+...||++|+.+ ++++. +..| ..+....|..
T Consensus 96 ~~~~~~~~---~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~-~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~A 171 (276)
T PRK05864 96 ELLDDVIL---ALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASS-SAYFRAAGINNGLTASELGLSYLLPRAIGSSRA 171 (276)
T ss_pred HHHHHHHH---HHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeC-CCEecCcccccCCCCCCcchheehHhhhCHHHH
Confidence 01112222 34445789999999999999999988999988764 55442 2211 1122222321
Q ss_pred ----ccccCCCcccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 252 ----ISAEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 252 ----v~~e~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
++.+.+.+.+.+ .-|++|.+++++ +..+.+.++..-|
T Consensus 172 ~~l~l~g~~~~a~eA~--~~Glv~~vv~~~-~l~~~a~~~a~~l 212 (276)
T PRK05864 172 FEIMLTGRDVDAEEAE--RIGLVSRQVPDE-QLLDTCYAIAARM 212 (276)
T ss_pred HHHHHcCCccCHHHHH--HcCCcceeeCHH-HHHHHHHHHHHHH
Confidence 133344455555 479999999764 4555666555544
No 219
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=95.80 E-value=0.28 Score=49.79 Aligned_cols=162 Identities=13% Similarity=0.138 Sum_probs=101.5
Q ss_pred EEEEEeC-----CccCHHHHHHHHHHHHHHhcC-CCcEEEEEecC-CCCCchHHHh-c---------chHHHHHHHHHHH
Q 048389 370 VGIIGNN-----GILFHESALKGAHFIELCTQR-KIPLVFLQNIT-GFMVGSRSEA-N---------GIAKAGAKMVMAV 432 (566)
Q Consensus 370 Vgvvan~-----G~l~~~~a~K~ar~i~l~~~~-~iPlV~l~dt~-G~~~g~~~E~-~---------g~~~~~a~~~~a~ 432 (566)
|++|--| .+++.+....+...++.++.. .+.+|.|.-.+ .|..|.+-.. . .......+++..+
T Consensus 15 v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (257)
T COG1024 15 IAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRAL 94 (257)
T ss_pred EEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHH
Confidence 6666554 489999999999999888764 78888887654 3544432211 1 1223344578899
Q ss_pred HcCCCCEEEEEcCCCCchhhh-hhccCCCCCCEEEEe-------cCceeeccCHHHHHHHHhhhhhhhhhhcCCCCchHH
Q 048389 433 SCAKVPKVTIIVGGSFGAGNY-AMCGRAYSPNFMFLW-------PNARISVMGGAQAAGVLSQVEKDKKKKQGIEWTKQE 504 (566)
Q Consensus 433 ~~a~vP~isvi~g~~~Ggg~~-am~~~~~~~d~~~A~-------p~A~i~vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~ 504 (566)
..+..|+|+.|-|.++|||.- ++ .+|+++|- |...+|+++..+....+.+. +....
T Consensus 95 ~~~~kPvIAav~G~a~GgG~eLal-----~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~-----------~G~~~ 158 (257)
T COG1024 95 ADLPKPVIAAVNGYALGGGLELAL-----ACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRL-----------LGRGR 158 (257)
T ss_pred HhCCCCEEEEEcceEeechhhhhh-----cCCeEEecCCcEecCcccccccCCCCcHHHHHHHh-----------cCHHH
Confidence 999999999999999999864 44 34666555 55566666644544444321 00000
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHhCcccceecCc-hhhHHHHHHHHHHhh
Q 048389 505 EEMFKAKVVEAYEKEGNAYYSTARLWDDGIIDP-ADTRKIIGFCISAAL 552 (566)
Q Consensus 505 ~~~~~~~l~~~~~~~~~~~~aa~~g~iD~II~p-~~tR~~L~~~L~~~~ 552 (566)
..++. -.-+..++..+.+.|+||.|+++ .++.+......+.+.
T Consensus 159 ----a~~l~-ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a 202 (257)
T COG1024 159 ----AKELL-LTGEPISAAEALELGLVDEVVPDAEELLERALELARRLA 202 (257)
T ss_pred ----HHHHH-HcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHc
Confidence 00100 01123578888899999999985 566666555555443
No 220
>PRK08788 enoyl-CoA hydratase; Validated
Probab=95.79 E-value=0.085 Score=54.81 Aligned_cols=154 Identities=16% Similarity=0.169 Sum_probs=87.0
Q ss_pred ecCccccccCChHHHHHHHHHHHHHHh------CCCcEEEEEcC------CCCCCCccccc--cCc---hhhHH-HHHHH
Q 048389 133 NDPTVKGGTYFPITIKKHLRAQEIAAQ------CKLPCIYLVDS------GGAYLPKQAEV--FPD---KENFG-RIFYN 194 (566)
Q Consensus 133 ~D~tv~gGs~g~~~~~K~~r~~~lA~~------~~lPlV~l~ds------gGarl~~~~~~--~~~---~~~~~-~i~~~ 194 (566)
.|+.... +++..-.+.+..+++-+.+ ..+-+|.|.-. +|+.+.+-... ... +..+. ..+..
T Consensus 32 l~p~~~N-al~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (287)
T PRK08788 32 MRAQPRP-CFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYARACVDG 110 (287)
T ss_pred ECCCCCC-CCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHHHHHHH
Confidence 3555444 8999999999999987765 34555666443 22222110000 000 00111 11111
Q ss_pred HHHHc---CCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------c----cHHHHHhhhccc------ccc
Q 048389 195 QAIMS---AEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------A----GPPLVKAATGEE------ISA 254 (566)
Q Consensus 195 ~a~ls---~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~----GP~vv~~~~ge~------v~~ 254 (566)
+.++. ....|+|+.|-|.|+|||.-+...||++|+.+ ++++++ . |...+....|.. ++.
T Consensus 111 ~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~-~a~f~~pev~lGl~p~~g~~~~l~~~vG~~~A~ellltG 189 (287)
T PRK08788 111 VHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAER-GAKMGFPEILFNLFPGMGAYSFLARRVGPKLAEELILSG 189 (287)
T ss_pred HHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecC-CCEeeCchhhhCcCCCchHHHHHHHHhhHHHHHHHHHcC
Confidence 11111 34689999999999999999988999988764 565543 1 111122222211 133
Q ss_pred cCCCcccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 255 EDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 255 e~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
+.+.+.+.+ .-|++|.+++++ +..+.++++..-+
T Consensus 190 ~~l~A~eA~--~~GLV~~vv~~~-el~~~a~~~a~~i 223 (287)
T PRK08788 190 KLYTAEELH--DMGLVDVLVEDG-QGEAAVRTFIRKS 223 (287)
T ss_pred CCCCHHHHH--HCCCCcEecCch-HHHHHHHHHHHHH
Confidence 445555556 479999999754 4566666666654
No 221
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=95.70 E-value=0.04 Score=56.17 Aligned_cols=149 Identities=17% Similarity=0.199 Sum_probs=91.4
Q ss_pred EecCccccccCChHHHHHHHHHHHHHHh-CCCcEEEEEcCCCCCCCccc-----c-ccCchhhHHHHHHHHHHHcCCCcC
Q 048389 132 ANDPTVKGGTYFPITIKKHLRAQEIAAQ-CKLPCIYLVDSGGAYLPKQA-----E-VFPDKENFGRIFYNQAIMSAEGIP 204 (566)
Q Consensus 132 a~D~tv~gGs~g~~~~~K~~r~~~lA~~-~~lPlV~l~dsgGarl~~~~-----~-~~~~~~~~~~i~~~~a~ls~~~VP 204 (566)
-|.+.-+. ++.......+.++.....+ .-.|+|.|.=+++++-...+ . .+... .-+..++....++....|
T Consensus 52 lNRP~~~N-al~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~-~~~~~~~~~~~~~~~~KP 129 (290)
T KOG1680|consen 52 LNRPKALN-ALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDV-SDGIFLRVWDLVSRLKKP 129 (290)
T ss_pred eCChHHhc-cccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhcccccc-ccccccchhhhhhhcccc
Confidence 34444443 6777777777776665554 45899999887666442111 0 00000 001122333334445679
Q ss_pred EEEEEeccccccccccccCCCeeEEEecceeEEeccHHH---------------------HHh-hhcccccccCCCcccc
Q 048389 205 QIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPL---------------------VKA-ATGEEISAEDLGGAAV 262 (566)
Q Consensus 205 ~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~GP~v---------------------v~~-~~ge~v~~e~lGga~~ 262 (566)
+|+.|-|.|.|||.-+.-|||+++| .++|.+++..+++ ++. .||..++++| -
T Consensus 130 vIaainG~AlgGG~ELalmCDirva-~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg~~~~Aqe-----A 203 (290)
T KOG1680|consen 130 VIAAINGFALGGGLELALMCDIRVA-GEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTGRRLGAQE-----A 203 (290)
T ss_pred eeEeeeceeeccchhhhhhcceEec-cCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHHhcCcccHHH-----H
Confidence 9999999999999999999999886 5578888765542 222 1233444333 3
Q ss_pred cccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 263 HCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 263 h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
+ .-|+++.|++.+ +++..+.+|...+
T Consensus 204 ~--~~GlVn~Vvp~~-~~l~eAv~l~~~I 229 (290)
T KOG1680|consen 204 K--KIGLVNKVVPSG-DALGEAVKLAEQI 229 (290)
T ss_pred H--hCCceeEeecch-hHHHHHHHHHHHH
Confidence 3 689999999754 4666666666554
No 222
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=95.66 E-value=0.5 Score=48.12 Aligned_cols=95 Identities=16% Similarity=0.149 Sum_probs=64.1
Q ss_pred CccCHHHHHHHHHHHHHHhc-CCCcEEEEEecCC-CCCchHH-Hh-----------cchHHHHHHHHHHHHcCCCCEEEE
Q 048389 377 GILFHESALKGAHFIELCTQ-RKIPLVFLQNITG-FMVGSRS-EA-----------NGIAKAGAKMVMAVSCAKVPKVTI 442 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~-~~iPlV~l~dt~G-~~~g~~~-E~-----------~g~~~~~a~~~~a~~~a~vP~isv 442 (566)
.+++.+....+.++++..+. ..+-+|.|.-.++ |..|.+- +. ....+...+++..+....+|+|+.
T Consensus 28 Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 107 (260)
T PRK07827 28 NALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAA 107 (260)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 67899999999888887653 4566777765443 3333321 10 011233456778888999999999
Q ss_pred EcCCCCchhhhhhccCCCCCCEEEEecCceeec
Q 048389 443 IVGGSFGAGNYAMCGRAYSPNFMFLWPNARISV 475 (566)
Q Consensus 443 i~g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~v 475 (566)
|-|.++|||.--.+ ..|+++|.+++++++
T Consensus 108 v~G~a~GgG~~lal----acD~ria~~~a~f~~ 136 (260)
T PRK07827 108 IDGHVRAGGFGLVG----ACDIVVAGPESTFAL 136 (260)
T ss_pred EcCeeecchhhHHH----hCCEEEEcCCCEEeC
Confidence 99999999875222 358888887776665
No 223
>PLN02921 naphthoate synthase
Probab=95.62 E-value=0.17 Score=53.61 Aligned_cols=159 Identities=18% Similarity=0.237 Sum_probs=90.3
Q ss_pred EEEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcCC------CCCCCcccc-ccCchhhHHH--HHHHHHH
Q 048389 128 CMFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDSG------GAYLPKQAE-VFPDKENFGR--IFYNQAI 197 (566)
Q Consensus 128 v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~dsg------Garl~~~~~-~~~~~~~~~~--i~~~~a~ 197 (566)
..|.-|++.. .=+++......+.++++.+... .+-+|.|.-++ |+.+.+-.. .......... .......
T Consensus 78 a~ItLnrP~~-~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (327)
T PLN02921 78 AKITINRPER-RNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQ 156 (327)
T ss_pred EEEEECCCCC-CCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHH
Confidence 3344455553 3488999999999999887654 45566665433 233321000 0000001111 0111223
Q ss_pred HcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEeccH-----------HHHHhhhccc------ccccCCCcc
Q 048389 198 MSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGP-----------PLVKAATGEE------ISAEDLGGA 260 (566)
Q Consensus 198 ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~GP-----------~vv~~~~ge~------v~~e~lGga 260 (566)
+....+|+|+.|-|.|+|||..+...||++|+. +++.+++..+ ..+...+|.. ++.+-+.+.
T Consensus 157 l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~-~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ellltG~~~~A~ 235 (327)
T PLN02921 157 IRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAA-DNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTAS 235 (327)
T ss_pred HHhCCCCEEEEECCEEecHHHHHHHhCCEEEEe-CCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHH
Confidence 444578999999999999999998899999875 4676654221 1122222311 122334444
Q ss_pred cccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 261 AVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 261 ~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
+.+ .-|++|.+++++ +..+.+.++..-|
T Consensus 236 eA~--~~GLV~~vv~~~-~l~~~a~~~a~~l 263 (327)
T PLN02921 236 EAL--KMGLVNTVVPLD-ELEGETVKWCREI 263 (327)
T ss_pred HHH--HCCCceEEeCHH-HHHHHHHHHHHHH
Confidence 555 489999999754 4556666665544
No 224
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=95.48 E-value=0.17 Score=53.85 Aligned_cols=151 Identities=19% Similarity=0.235 Sum_probs=82.3
Q ss_pred ECCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcCC------CCCCCcccc----ccCc-h-hhHH
Q 048389 123 VHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDSG------GAYLPKQAE----VFPD-K-ENFG 189 (566)
Q Consensus 123 I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~dsg------Garl~~~~~----~~~~-~-~~~~ 189 (566)
++|.-..|.-|++.. .=++...-...+.++++.+... .+-+|.|.-++ |+.+.+-.. .... . ..+.
T Consensus 9 ~~~~v~~itLnrP~~-~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 87 (342)
T PRK05617 9 VEGGVGVITLNRPKA-LNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFR 87 (342)
T ss_pred EECCEEEEEECCCcc-ccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHH
Confidence 345444455555543 3468888888888888776654 35556665433 333321000 0000 0 0011
Q ss_pred HHHHHHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEecc------H-----HHHHhhhcc---c--cc
Q 048389 190 RIFYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAG------P-----PLVKAATGE---E--IS 253 (566)
Q Consensus 190 ~i~~~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~G------P-----~vv~~~~ge---~--v~ 253 (566)
........+.....|+|++|-|.|+|||..+...||++|+. +++++++.- | ..+....|. + ++
T Consensus 88 ~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~-~~a~f~~pe~~lGl~P~~g~~~~L~r~~g~~a~~lllt 166 (342)
T PRK05617 88 EEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVT-ERTKMAMPETGIGFFPDVGGTYFLSRAPGALGTYLALT 166 (342)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEc-CCCEeeCCccccCcCCCccceeEehhcccHHHHHHHHc
Confidence 11111123344578999999999999999998899999876 456554311 0 001111110 0 12
Q ss_pred ccCCCcccccccccCcceEEEcch
Q 048389 254 AEDLGGAAVHCKTSGVSDYFAQDE 277 (566)
Q Consensus 254 ~e~lGga~~h~~~sG~~d~v~~de 277 (566)
.+.+.+.+.+ .-|++|.+++++
T Consensus 167 G~~i~A~eA~--~~GLv~~vv~~~ 188 (342)
T PRK05617 167 GARISAADAL--YAGLADHFVPSA 188 (342)
T ss_pred CCCCCHHHHH--HcCCcceecCHH
Confidence 3344455556 479999999754
No 225
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=95.43 E-value=0.43 Score=49.78 Aligned_cols=158 Identities=11% Similarity=0.015 Sum_probs=93.6
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC-CCCCchHHH---------h--cc---hHHHH----------HHHHH
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT-GFMVGSRSE---------A--NG---IAKAG----------AKMVM 430 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~-G~~~g~~~E---------~--~g---~~~~~----------a~~~~ 430 (566)
.+++.+....+.+.++.++ ...+-+|.|.-.+ .|..|.+-. . .+ ..... ...+.
T Consensus 27 NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (298)
T PRK12478 27 NTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGRWDPGKDFAMVTARETGPTQKFM 106 (298)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcccccccCchhhhhhhhhhhcchHHHHH
Confidence 7899999999999888765 4567788886543 233222100 0 00 00110 12455
Q ss_pred HHHcCCCCEEEEEcCCCCchhhh-hhccCCCCCCEEEEecCceeeccCHHH--HH-HHHhhhhhhhhhhcCCCCchHHHH
Q 048389 431 AVSCAKVPKVTIIVGGSFGAGNY-AMCGRAYSPNFMFLWPNARISVMGGAQ--AA-GVLSQVEKDKKKKQGIEWTKQEEE 506 (566)
Q Consensus 431 a~~~a~vP~isvi~g~~~Ggg~~-am~~~~~~~d~~~A~p~A~i~vmg~e~--aa-~i~~~~~~~~~~~~~~~~~~~~~~ 506 (566)
.+.....|+|+.|-|.|+|||.- ++ .+|+++|-++++++.-...- .. ...+.. + +...
T Consensus 107 ~l~~~~kPvIAaV~G~a~GgG~~Lal-----acD~ria~~~A~f~~pe~~l~G~~~~~~~~~------~----vG~~--- 168 (298)
T PRK12478 107 AIWRASKPVIAQVHGWCVGGASDYAL-----CADIVIASDDAVIGTPYSRMWGAYLTGMWLY------R----LSLA--- 168 (298)
T ss_pred HHHhCCCCEEEEEccEEehhHHHHHH-----HCCEEEEcCCcEEeccccccccCCchhHHHH------H----hhHH---
Confidence 67889999999999999999864 33 36899988887776522220 00 000000 0 0010
Q ss_pred HHHHHHHHHHHhhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCC
Q 048389 507 MFKAKVVEAYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNR 554 (566)
Q Consensus 507 ~~~~~l~~~~~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~ 554 (566)
...++.- .-+..++..+.+.|+|++|+++.++-+......+.+..+
T Consensus 169 -~A~~lll-tg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~ 214 (298)
T PRK12478 169 -KVKWHSL-TGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARI 214 (298)
T ss_pred -HHHHHHH-cCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhC
Confidence 0011100 012247778889999999999988877776666655544
No 226
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=95.39 E-value=0.52 Score=55.10 Aligned_cols=156 Identities=17% Similarity=0.182 Sum_probs=94.5
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC-CCCCchHH-Hhc-----------chHHHHHHHHHHHHcCCCCEEEE
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT-GFMVGSRS-EAN-----------GIAKAGAKMVMAVSCAKVPKVTI 442 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~-G~~~g~~~-E~~-----------g~~~~~a~~~~a~~~a~vP~isv 442 (566)
.+++.+....+.++++.++ ...+-+|.|.-.+ .|..|.+- |.. ...+.+.+++.++..+..|+|+.
T Consensus 29 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAa 108 (715)
T PRK11730 29 NKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAA 108 (715)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 6788888898888888765 4556677776543 34444321 111 12223445677888999999999
Q ss_pred EcCCCCchhhh-hhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHH
Q 048389 443 IVGGSFGAGNY-AMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVE 514 (566)
Q Consensus 443 i~g~~~Ggg~~-am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 514 (566)
|-|.|+|||.- ++ .+|+++|.+++++++ .+.-+....+.+. +.... +. +-+..
T Consensus 109 v~G~a~GgG~~LAl-----acD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rl-----------vG~~~--A~-~lllt 169 (715)
T PRK11730 109 INGYALGGGCECVL-----ATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRL-----------IGADN--AL-EWIAA 169 (715)
T ss_pred ECCEeehHHHHHHH-----hCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHh-----------cCHHH--HH-HHHHc
Confidence 99999999864 44 358888887766655 3322222222110 00100 00 00100
Q ss_pred HHHhhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhC
Q 048389 515 AYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALN 553 (566)
Q Consensus 515 ~~~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~ 553 (566)
-+..++..+.+.|++|+|+++.++.+...+..+.+..
T Consensus 170 --G~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~ 206 (715)
T PRK11730 170 --GKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIA 206 (715)
T ss_pred --CCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhh
Confidence 1125778888999999999998877665555544443
No 227
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=95.37 E-value=0.045 Score=53.92 Aligned_cols=86 Identities=19% Similarity=0.188 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHhC-CC-cEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEeccccccccccccC
Q 048389 146 TIKKHLRAQEIAAQC-KL-PCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAYIPAM 223 (566)
Q Consensus 146 ~~~K~~r~~~lA~~~-~l-PlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG~ay~~a~ 223 (566)
..+.+.+.++.|.+. ++ .+|.-.+|+|..+. +..++..++..++ .+.|+++.+-|.|.|+|.+++..
T Consensus 14 s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~----------~~~~l~~~i~~~~-~~kpvia~v~g~a~s~g~~la~a 82 (207)
T TIGR00706 14 SPEDFDKKIKRIKDDKSIKALLLRINSPGGTVV----------ASEEIYEKLKKLK-AKKPVVASMGGVAASGGYYIAMA 82 (207)
T ss_pred CHHHHHHHHHHHhhCCCccEEEEEecCCCCCHH----------HHHHHHHHHHHhc-CCCCEEEEECCccchHHHHHHhc
Confidence 456777788777654 33 56666888886441 2234455555555 36899999999999999999889
Q ss_pred CCeeEEEecceeEEeccHHH
Q 048389 224 ADESVMVKGNGTIFLAGPPL 243 (566)
Q Consensus 224 ~d~vi~v~~~a~i~~~GP~v 243 (566)
||.++| .|++.++..|+-.
T Consensus 83 aD~i~a-~p~a~vg~iGv~~ 101 (207)
T TIGR00706 83 ADEIVA-NPGTITGSIGVIL 101 (207)
T ss_pred CCEEEE-CCCCeEEeeeEEE
Confidence 999776 5788888877654
No 228
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=95.34 E-value=1 Score=45.82 Aligned_cols=95 Identities=18% Similarity=0.220 Sum_probs=61.7
Q ss_pred CccCHHHHHHHHHHHHHHhc-CCCcEEEEEecCC-CCCchHHH---------hcchH-------HHHHHHHHHHHcCCCC
Q 048389 377 GILFHESALKGAHFIELCTQ-RKIPLVFLQNITG-FMVGSRSE---------ANGIA-------KAGAKMVMAVSCAKVP 438 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~-~~iPlV~l~dt~G-~~~g~~~E---------~~g~~-------~~~a~~~~a~~~a~vP 438 (566)
.+++.+....+.++++.++. ..+-+|.|.-.++ |..|.+-. ..... ....+++..+.....|
T Consensus 25 Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp 104 (262)
T PRK07509 25 NALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVP 104 (262)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHHHHHHHhCCCC
Confidence 78899999999998887664 4566777755442 33333211 00111 1122344556789999
Q ss_pred EEEEEcCCCCchhhhhhccCCCCCCEEEEecCceeec
Q 048389 439 KVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISV 475 (566)
Q Consensus 439 ~isvi~g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~v 475 (566)
+|+.|-|.++|||..-.+ ..|+++|.++++++.
T Consensus 105 vIaav~G~a~GgG~~lal----acD~~ia~~~a~f~~ 137 (262)
T PRK07509 105 VIAALEGVCFGGGLQIAL----GADIRIAAPDTKLSI 137 (262)
T ss_pred EEEEECCeeecchHHHHH----hCCEEEecCCCEeec
Confidence 999999999999764222 368888888777665
No 229
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=95.20 E-value=0.02 Score=68.83 Aligned_cols=167 Identities=21% Similarity=0.266 Sum_probs=107.4
Q ss_pred HHHhccCCCCCceeccccccccccccccCCCcEEEEEEEECCEEEEEEEecCcc---------------------ccccC
Q 048389 84 RIDRLTDPGSSFLELSQLAGHELYEETLQSGGIITGIGPVHGRLCMFVANDPTV---------------------KGGTY 142 (566)
Q Consensus 84 ri~~L~D~gS~F~El~~l~~~~~~~~~~~~~gvvtG~G~I~Gr~v~v~a~D~tv---------------------~gGs~ 142 (566)
++.-|||.|| |.|+... .+.+||||.+|++|-||+|+|-+... -|=-|
T Consensus 1818 ~~~GlFDk~S-F~Eil~~----------WAktVV~GRArLgGIPvGVIavEtrtve~~vPADPan~dS~e~i~q~AGQVW 1886 (2196)
T KOG0368|consen 1818 WLSGLFDKGS-FDEILSG----------WAKTVVTGRARLGGIPVGVIAVETRTVENIVPADPANLDSEEQITQEAGQVW 1886 (2196)
T ss_pred cccccccCcc-HHHHHhH----------HhhHheecceecCCcceEEEEEEeeeeeeeccCCCCCCCcHhhhhhcCCcee
Confidence 5667999999 9998543 36789999999999999999987521 24579
Q ss_pred ChHHHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccccccCc-hhhHHHHHHHHHHHcCCCcCEEEEEe--ccccccccc
Q 048389 143 FPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPD-KENFGRIFYNQAIMSAEGIPQIALVL--GSCTAGGAY 219 (566)
Q Consensus 143 g~~~~~K~~r~~~lA~~~~lPlV~l~dsgGarl~~~~~~~~~-~~~~~~i~~~~a~ls~~~VP~isvv~--G~~~GG~ay 219 (566)
.+..+-|..+++.==...++|++.|..==|+. +.|-+.+.. +.-.+.|..+++.. .-|++.+|- |.-= ||++
T Consensus 1887 yPdSAfKTaQAInDFNrEqLPLmIiAnwRGFS-GGqkDMy~~VLkfGa~IVDaL~~Y---kQPv~vYIPp~gELR-GGsW 1961 (2196)
T KOG0368|consen 1887 YPDSAFKTAQAINDFNREQLPLMIIANWRGFS-GGQKDMYDQVLKFGAYIVDALRQY---KQPVLVYIPPMGELR-GGSW 1961 (2196)
T ss_pred cCchHHHHHHHHhhhccccCCeEEeecccccC-ccchHHHHHHHHHHHHHHHHHHHh---CCceEEEcCcchhhc-CceE
Confidence 99999999999865566899999999844432 222222221 22234566665554 458887763 3322 3343
Q ss_pred cccCCCeeEEEecceeEEeccHHHHHhhhcccccccCCCcccccccccCcceEEEcchhHHHHHHHHH
Q 048389 220 IPAMADESVMVKGNGTIFLAGPPLVKAATGEEISAEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNI 287 (566)
Q Consensus 220 ~~a~~d~vi~v~~~a~i~~~GP~vv~~~~ge~v~~e~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ 287 (566)
. | ++++ --|+-+++..-+ +.-|| ++ +..|++-....- ++.++..||+
T Consensus 1962 v-------V-vD~t-----In~~~memyAD~----~sRgg--VL-EPeg~v~IKfRr-e~Lle~MrR~ 2008 (2196)
T KOG0368|consen 1962 V-------V-VDPT-----INPDQMEMYADE----ESRGG--VL-EPEGVVEIKFRR-EMLLEMMRRL 2008 (2196)
T ss_pred E-------E-EcCc-----cCHHHHHHHhhh----hhccc--cc-cCCceEEEEeeH-HHHHHHHHhc
Confidence 2 2 2322 125555554322 23345 33 368999887754 4477777776
No 230
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=94.76 E-value=0.34 Score=52.77 Aligned_cols=172 Identities=15% Similarity=0.165 Sum_probs=97.5
Q ss_pred CCCcEEEEEEEECCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcCC-----CCCCCcc-----cc
Q 048389 112 QSGGIITGIGPVHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDSG-----GAYLPKQ-----AE 180 (566)
Q Consensus 112 ~~~gvvtG~G~I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~dsg-----Garl~~~-----~~ 180 (566)
..+.|+.- + .|.--.|.-|.+..+. ++.......+.++++...+. .+-+|.|.-+| |..+.+- .+
T Consensus 40 ~~~~v~~e--~-~~~~~~ItLNRP~~lN-ALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~ 115 (407)
T PLN02851 40 LQDQVLVE--G-RAKSRAAILNRPSSLN-ALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEG 115 (407)
T ss_pred CCCCeEEE--E-ECCEEEEEECCCCcCC-CCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhcccc
Confidence 44556532 2 3333345566666544 89999999999999877654 56666665433 2222110 00
Q ss_pred ccCchhh-HHHHHHHHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEeccee-------EEec---cH-HHHHhhh
Q 048389 181 VFPDKEN-FGRIFYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGT-------IFLA---GP-PLVKAAT 248 (566)
Q Consensus 181 ~~~~~~~-~~~i~~~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~-------i~~~---GP-~vv~~~~ 248 (566)
....... +...+.....+.....|+|++|-|.|+|||..+...||+.|..+ ++. |++. |. -.+....
T Consensus 116 ~~~~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate-~a~famPE~~iGl~PdvG~s~~L~rl~ 194 (407)
T PLN02851 116 NVEECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTD-KTVFAHPEVQMGFHPDAGASYYLSRLP 194 (407)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeC-CceEecchhccCCCCCccHHHHHHHhc
Confidence 0000000 11111111223345789999999999999999988899988764 444 3332 11 1122111
Q ss_pred c---cc--ccccCCCcccccccccCcceEEEcchhHHHHHHHHHHHhcc
Q 048389 249 G---EE--ISAEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNLH 292 (566)
Q Consensus 249 g---e~--v~~e~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~Lp 292 (566)
| .. ++.+.++|.+.+ ..|++|++++++. +..+.++|.-+.
T Consensus 195 g~~g~~L~LTG~~i~a~eA~--~~GLa~~~v~~~~--l~~l~~~l~~~~ 239 (407)
T PLN02851 195 GYLGEYLALTGQKLNGVEMI--ACGLATHYCLNAR--LPLIEERLGKLL 239 (407)
T ss_pred CHHHHHHHHhCCcCCHHHHH--HCCCceeecCHhh--HHHHHHHHHhhc
Confidence 1 11 245566677777 4899999998653 466667776553
No 231
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=94.72 E-value=1.3 Score=51.93 Aligned_cols=153 Identities=16% Similarity=0.115 Sum_probs=90.9
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC-CCCCchHH-Hh-----------cchHHHHHHHHHHHHcCCCCEEEE
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT-GFMVGSRS-EA-----------NGIAKAGAKMVMAVSCAKVPKVTI 442 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~-G~~~g~~~-E~-----------~g~~~~~a~~~~a~~~a~vP~isv 442 (566)
.+++.+....+.+.++.++ ...+-.|.|.-.. .|..|.+- |. ....+.+..++..+..+.+|+|+.
T Consensus 29 Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pkPvIAa 108 (714)
T TIGR02437 29 NKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQWLLFANSIFNKLEDLPVPTVAA 108 (714)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 6788888888888887654 4556666665432 23333321 11 112223445778889999999999
Q ss_pred EcCCCCchhhh-hhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHH
Q 048389 443 IVGGSFGAGNY-AMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVE 514 (566)
Q Consensus 443 i~g~~~Ggg~~-am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 514 (566)
|-|.|+|||.- ++ .+|+++|.+++++++ .+.-+....+.+. +.... + .++.-
T Consensus 109 i~G~alGGGleLal-----acD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rl-----------iG~~~--A--~~lll 168 (714)
T TIGR02437 109 INGIALGGGCECVL-----ATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRV-----------IGADN--A--LEWIA 168 (714)
T ss_pred ECCeeecHHHHHHH-----hCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHH-----------hCHHH--H--HHHHH
Confidence 99999999864 44 358888887776664 2222222222110 00000 0 11110
Q ss_pred HHHhhCCHHHHHhCcccceecCchhhHHHHHHHHHH
Q 048389 515 AYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISA 550 (566)
Q Consensus 515 ~~~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~ 550 (566)
.-+..++..+.+.|++|.|+++.++..........
T Consensus 169 -tG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~ 203 (714)
T TIGR02437 169 -SGKENRAEDALKVGAVDAVVTADKLGAAALQLLKD 203 (714)
T ss_pred -cCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHH
Confidence 01125788889999999999988776655444433
No 232
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=94.72 E-value=0.48 Score=50.42 Aligned_cols=146 Identities=11% Similarity=0.059 Sum_probs=87.3
Q ss_pred CccCHHHHHHHHHHHHHHhc-CCCcEEEEEecC--CCCCchHH-Hhc------------chHHHHHHHHHHHHcCCCCEE
Q 048389 377 GILFHESALKGAHFIELCTQ-RKIPLVFLQNIT--GFMVGSRS-EAN------------GIAKAGAKMVMAVSCAKVPKV 440 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~-~~iPlV~l~dt~--G~~~g~~~-E~~------------g~~~~~a~~~~a~~~a~vP~i 440 (566)
.+++.+....+.++++.++. ..+-+|+|.-.+ .|..|.+- +.. ...+...+++..+.....|+|
T Consensus 25 Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvI 104 (342)
T PRK05617 25 NALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEYRLNALIARYPKPYI 104 (342)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 67888988888888876653 456677776644 24444431 100 111222346677888999999
Q ss_pred EEEcCCCCchhhhhhccCCCCCCEEEEecCceeec-------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHH
Q 048389 441 TIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISV-------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVV 513 (566)
Q Consensus 441 svi~g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~v-------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 513 (566)
+.|-|.++|||.--. +.+|+++|-++++++. ...-+....+.+ +... . + .++.
T Consensus 105 AaVnG~a~GgG~~La----lacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r------------~~g~-~-a--~~ll 164 (342)
T PRK05617 105 ALMDGIVMGGGVGIS----AHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSR------------APGA-L-G--TYLA 164 (342)
T ss_pred EEEcCEEEccHhHHh----hhCCEEEEcCCCEeeCCccccCcCCCccceeEehh------------cccH-H-H--HHHH
Confidence 999999999986422 2468887776666554 322222222211 0000 0 0 1111
Q ss_pred HHHHhhCCHHHHHhCcccceecCchhhHHH
Q 048389 514 EAYEKEGNAYYSTARLWDDGIIDPADTRKI 543 (566)
Q Consensus 514 ~~~~~~~~~~~aa~~g~iD~II~p~~tR~~ 543 (566)
..-+..++..+.+.|+||.|+++.++.+.
T Consensus 165 -ltG~~i~A~eA~~~GLv~~vv~~~~l~~~ 193 (342)
T PRK05617 165 -LTGARISAADALYAGLADHFVPSADLPAL 193 (342)
T ss_pred -HcCCCCCHHHHHHcCCcceecCHHHHHHH
Confidence 00123577888899999999999887665
No 233
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=94.65 E-value=0.32 Score=50.70 Aligned_cols=163 Identities=17% Similarity=0.148 Sum_probs=93.2
Q ss_pred ECCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcC-----CCCCCCccc----------cccCchh
Q 048389 123 VHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDS-----GGAYLPKQA----------EVFPDKE 186 (566)
Q Consensus 123 I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~ds-----gGarl~~~~----------~~~~~~~ 186 (566)
++|.-..|.-|++.. -=+++......+..+++.+... .+-+|.|.-. +|+.+.+.. +......
T Consensus 11 ~~~~Va~ItLnrP~~-~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 89 (298)
T PRK12478 11 TAGPVATITLNRPEQ-LNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGRWDPGK 89 (298)
T ss_pred ccCCEEEEEecCCcc-cCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcccccccCchh
Confidence 345444455666553 3478888889999999877654 5667777543 444443200 0000000
Q ss_pred hH----HHH---HHHHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEec-----cH---H-HHHhhhcc
Q 048389 187 NF----GRI---FYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLA-----GP---P-LVKAATGE 250 (566)
Q Consensus 187 ~~----~~i---~~~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~-----GP---~-vv~~~~ge 250 (566)
.+ ... ......+.....|+|+.|-|.|+|||..++..||++|+.+ ++++++. |. . ... .+|.
T Consensus 90 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~-~A~f~~pe~~l~G~~~~~~~~~-~vG~ 167 (298)
T PRK12478 90 DFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASD-DAVIGTPYSRMWGAYLTGMWLY-RLSL 167 (298)
T ss_pred hhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcC-CcEEeccccccccCCchhHHHH-HhhH
Confidence 00 000 0011224445789999999999999999988999988754 5655431 11 0 111 1221
Q ss_pred c------ccccCCCcccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 251 E------ISAEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 251 ~------v~~e~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
. ++.+.+.+.+.+ .-|++|.+++++ +..+.+.++...|
T Consensus 168 ~~A~~llltg~~i~A~eA~--~~GLV~~vv~~~-~l~~~a~~~a~~l 211 (298)
T PRK12478 168 AKVKWHSLTGRPLTGVQAA--EAELINEAVPFE-RLEARVAEVATEL 211 (298)
T ss_pred HHHHHHHHcCCccCHHHHH--HcCCcceecCHH-HHHHHHHHHHHHH
Confidence 1 133445555555 489999999754 4556666665544
No 234
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=94.60 E-value=0.2 Score=52.85 Aligned_cols=86 Identities=20% Similarity=0.120 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHHHhCC--CcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEeccccccccccc
Q 048389 144 PITIKKHLRAQEIAAQCK--LPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAYIP 221 (566)
Q Consensus 144 ~~~~~K~~r~~~lA~~~~--lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG~ay~~ 221 (566)
..+.+.+...++-+...+ -++|..+||||.-. .+...++..+.++++.+ |++..|-+-|+.||.|++
T Consensus 79 ~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v----------~as~~i~~~l~~l~~~~-PV~v~v~~~AASGGY~IA 147 (317)
T COG0616 79 FIGGDDIEEILRAARADPSVKAVVLRINSPGGSV----------VASELIARALKRLRAKK-PVVVSVGGYAASGGYYIA 147 (317)
T ss_pred cccHHHHHHHHHHHhcCCCCceEEEEEECcCCch----------hHHHHHHHHHHHHhhcC-CEEEEECCeecchhhhhh
Confidence 344555555555555443 68999999999633 12356677777788766 999999999999999998
Q ss_pred cCCCeeEEEecceeEEeccH
Q 048389 222 AMADESVMVKGNGTIFLAGP 241 (566)
Q Consensus 222 a~~d~vi~v~~~a~i~~~GP 241 (566)
+-+|.++ +.|++.++--|+
T Consensus 148 ~aAd~I~-a~p~si~GSIGV 166 (317)
T COG0616 148 LAADKIV-ADPSSITGSIGV 166 (317)
T ss_pred ccCCEEE-ecCCceeeecee
Confidence 8899976 577776665554
No 235
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=94.60 E-value=1.2 Score=48.62 Aligned_cols=160 Identities=14% Similarity=0.096 Sum_probs=92.1
Q ss_pred EEEEEeC-----CccCHHHHHHHHHHHHHH-hcCCCcEEEEEecC-CCCCchH-HHh-----cch-------HHHHHHHH
Q 048389 370 VGIIGNN-----GILFHESALKGAHFIELC-TQRKIPLVFLQNIT-GFMVGSR-SEA-----NGI-------AKAGAKMV 429 (566)
Q Consensus 370 Vgvvan~-----G~l~~~~a~K~ar~i~l~-~~~~iPlV~l~dt~-G~~~g~~-~E~-----~g~-------~~~~a~~~ 429 (566)
|++|--| .+++.+....+.+.++.+ +...+-+|+|.-.+ .|..|-+ .+. .+. .+...++.
T Consensus 47 v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~~~~~l~ 126 (401)
T PLN02157 47 SRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFI 126 (401)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHH
Confidence 5555443 789999999999888755 45666777776433 2333322 110 111 11122345
Q ss_pred HHHHcCCCCEEEEEcCCCCchhhh-hhccCCCCCCEEEEe-------cCceeeccCHHHHHHHHhhhhhhhhhhcCCCCc
Q 048389 430 MAVSCAKVPKVTIIVGGSFGAGNY-AMCGRAYSPNFMFLW-------PNARISVMGGAQAAGVLSQVEKDKKKKQGIEWT 501 (566)
Q Consensus 430 ~a~~~a~vP~isvi~g~~~Ggg~~-am~~~~~~~d~~~A~-------p~A~i~vmg~e~aa~i~~~~~~~~~~~~~~~~~ 501 (566)
+.+.....|+|+.|=|.++|||.- ++ .+|+++|- |...||+...-+....+.+. .
T Consensus 127 ~~i~~~pkPvIA~v~G~a~GGG~~Lal-----~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl------------~ 189 (401)
T PLN02157 127 YLLGTYLKPHVAILNGVTMGGGTGVSI-----PGTFRVATDRTIFATPETIIGFHPDAGASFNLSHL------------P 189 (401)
T ss_pred HHHHhCCCCEEEEEeCeEeehhHHHHH-----hCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHh------------h
Confidence 678889999999999999999764 33 24666555 55556655444444333321 0
Q ss_pred hHHHHHHHHHHHHHHHhhCCHHHHHhCcccceecCchhhHHHHHHHHHHhh
Q 048389 502 KQEEEMFKAKVVEAYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAAL 552 (566)
Q Consensus 502 ~~~~~~~~~~l~~~~~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~ 552 (566)
.. ....|.= --+..++..+.+.|++|.|+++.++. .+...++.+.
T Consensus 190 G~----~a~~L~L-TG~~i~A~eA~~~GLv~~vVp~~~l~-~~~~~~~~i~ 234 (401)
T PLN02157 190 GR----LGEYLGL-TGLKLSGAEMLACGLATHYIRSEEIP-VMEEQLKKLL 234 (401)
T ss_pred hH----HHHHHHH-cCCcCCHHHHHHcCCceEEeCHhHHH-HHHHHHHHHH
Confidence 00 0001100 00124677788999999999998874 4445555443
No 236
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=94.49 E-value=0.54 Score=51.18 Aligned_cols=165 Identities=13% Similarity=0.137 Sum_probs=93.4
Q ss_pred EECCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcCC-----CCCCCccccc--cCchhhHHHHHH
Q 048389 122 PVHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDSG-----GAYLPKQAEV--FPDKENFGRIFY 193 (566)
Q Consensus 122 ~I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~dsg-----Garl~~~~~~--~~~~~~~~~i~~ 193 (566)
.++|.-..|.-|.+..+. ++...-...+..+++.+.+. .+-+|.|.-.| |+.+.+-... ..........|.
T Consensus 42 e~~g~v~~ItLNRP~~lN-ALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~ 120 (401)
T PLN02157 42 EGSGCSRTAILNRPPALN-ALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIREFFS 120 (401)
T ss_pred EEECCEEEEEECCCCccC-CCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHH
Confidence 345655555666666544 78888889998888776554 45555554332 3333210000 000000111121
Q ss_pred H----HHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------c----cHHHHHhhhcc---c--cc
Q 048389 194 N----QAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------A----GPPLVKAATGE---E--IS 253 (566)
Q Consensus 194 ~----~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~----GP~vv~~~~ge---~--v~ 253 (566)
. ...+....+|+|+.|-|.|+|||.-+...||++|..+ ++.+.+ . |.-.+....|. . ++
T Consensus 121 ~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate-~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~~a~~L~LT 199 (401)
T PLN02157 121 SLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATD-RTIFATPETIIGFHPDAGASFNLSHLPGRLGEYLGLT 199 (401)
T ss_pred HHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeC-CCEEEChhhhcCCCCCccHHHHHHHhhhHHHHHHHHc
Confidence 1 1224445789999999999999999988999988654 555432 1 11112222221 1 13
Q ss_pred ccCCCcccccccccCcceEEEcchhHHHHHHHHHHHhcc
Q 048389 254 AEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNLH 292 (566)
Q Consensus 254 ~e~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~Lp 292 (566)
.+.+.+.+.+ ..|++|.++++++ +..+..++.-+.
T Consensus 200 G~~i~A~eA~--~~GLv~~vVp~~~--l~~~~~~~~~i~ 234 (401)
T PLN02157 200 GLKLSGAEML--ACGLATHYIRSEE--IPVMEEQLKKLL 234 (401)
T ss_pred CCcCCHHHHH--HcCCceEEeCHhH--HHHHHHHHHHHH
Confidence 4455566666 4899999997653 355556665553
No 237
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=94.46 E-value=1.2 Score=48.52 Aligned_cols=152 Identities=16% Similarity=0.111 Sum_probs=89.9
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC-CCCCchHH-H-----hcc-------hHHHHHHHHHHHHcCCCCEEE
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT-GFMVGSRS-E-----ANG-------IAKAGAKMVMAVSCAKVPKVT 441 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~-G~~~g~~~-E-----~~g-------~~~~~a~~~~a~~~a~vP~is 441 (566)
.+++.+....+.+.++..+ ..++-+|+|.-.+ .|..|-+- + ..+ ..+..-++.+.+..+..|+|+
T Consensus 64 NALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIA 143 (407)
T PLN02851 64 NALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLYKFVYLQGTYLKPNVA 143 (407)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 6899999999999888664 4677777775433 23333221 1 011 112223445667789999999
Q ss_pred EEcCCCCchhhh-hhccCCCCCCEEE-------EecCceeeccCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHH
Q 048389 442 IIVGGSFGAGNY-AMCGRAYSPNFMF-------LWPNARISVMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVV 513 (566)
Q Consensus 442 vi~g~~~Ggg~~-am~~~~~~~d~~~-------A~p~A~i~vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 513 (566)
.|-|.++|||.. +++ +|+.+ +.|...||+...-++...+.+. ... ....|.
T Consensus 144 ~v~G~amGGG~gLal~-----~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl------------~g~----~g~~L~ 202 (407)
T PLN02851 144 IMDGITMGCGAGISIP-----GMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRL------------PGY----LGEYLA 202 (407)
T ss_pred EEcCEEeeHHHHHHHh-----CCEEEEeCCceEecchhccCCCCCccHHHHHHHh------------cCH----HHHHHH
Confidence 999999999864 332 45554 4566667766444444444321 000 001111
Q ss_pred HHHHhhCCHHHHHhCcccceecCchhhHHHHHHHHHHh
Q 048389 514 EAYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAA 551 (566)
Q Consensus 514 ~~~~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~ 551 (566)
.--+..++..+...|++|.+|+..++ +.|...|..+
T Consensus 203 -LTG~~i~a~eA~~~GLa~~~v~~~~l-~~l~~~l~~~ 238 (407)
T PLN02851 203 -LTGQKLNGVEMIACGLATHYCLNARL-PLIEERLGKL 238 (407)
T ss_pred -HhCCcCCHHHHHHCCCceeecCHhhH-HHHHHHHHhh
Confidence 00012467778889999999999877 4455555443
No 238
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=94.45 E-value=1.4 Score=47.73 Aligned_cols=144 Identities=12% Similarity=0.102 Sum_probs=86.0
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC-CCCCchHH-Hh-----cc--hHH---HHHHHHHHHHcCCCCEEEEE
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT-GFMVGSRS-EA-----NG--IAK---AGAKMVMAVSCAKVPKVTII 443 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~-G~~~g~~~-E~-----~g--~~~---~~a~~~~a~~~a~vP~isvi 443 (566)
.+++.+....+.++++.++ ...+-+|+|.-.+ .|..|.+- +. .+ ... ....++..+.....|+|+.|
T Consensus 33 Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAaV 112 (379)
T PLN02874 33 NVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCYHIHTYKKTQVALV 112 (379)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 6789999999999888765 4567788876544 34444321 11 01 111 11233556778999999999
Q ss_pred cCCCCchhhh-hhccCCCCCCEEEEecC-------ceeeccCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHH
Q 048389 444 VGGSFGAGNY-AMCGRAYSPNFMFLWPN-------ARISVMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEA 515 (566)
Q Consensus 444 ~g~~~Ggg~~-am~~~~~~~d~~~A~p~-------A~i~vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 515 (566)
-|.++|||.- ++ .+|+++|.++ .++|+...-+....+.+. ... ...++. .
T Consensus 113 ~G~a~GgG~~Lal-----acD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl------------~g~----~a~~l~-l 170 (379)
T PLN02874 113 HGLVMGGGAGLMV-----PMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRL------------PGH----LGEYLA-L 170 (379)
T ss_pred cCeEEecHHHHHH-----hCCeEEEeCCeEEeccccccCcCCChhHHHHHHhh------------hHH----HHHHHH-H
Confidence 9999999764 33 3577666554 555555444433333211 000 001110 0
Q ss_pred HHhhCCHHHHHhCcccceecCchhhHH
Q 048389 516 YEKEGNAYYSTARLWDDGIIDPADTRK 542 (566)
Q Consensus 516 ~~~~~~~~~aa~~g~iD~II~p~~tR~ 542 (566)
.-+..++..+.+.|++|.|+++.++-+
T Consensus 171 tG~~i~a~eA~~~GLv~~vv~~~~l~~ 197 (379)
T PLN02874 171 TGARLNGKEMVACGLATHFVPSEKLPE 197 (379)
T ss_pred cCCcccHHHHHHcCCccEEeCHHHHHH
Confidence 011257778889999999999987755
No 239
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=94.41 E-value=0.14 Score=48.55 Aligned_cols=90 Identities=11% Similarity=0.116 Sum_probs=62.8
Q ss_pred ccccCChHHHHHHHHHHHHHHhC--CCcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEeccccc
Q 048389 138 KGGTYFPITIKKHLRAQEIAAQC--KLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTA 215 (566)
Q Consensus 138 ~gGs~g~~~~~K~~r~~~lA~~~--~lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~G 215 (566)
..|.+++..++.+.+.+..+... .-|++..+||+|..+.. .-.++..+.. ...|+++++.|.|++
T Consensus 5 i~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~----------~~~i~~~i~~---~~~~v~~~~~g~aaS 71 (162)
T cd07013 5 LTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFA----------GMAIYDTIKF---IKADVVTIIDGLAAS 71 (162)
T ss_pred EccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHH----------HHHHHHHHHh---cCCCceEEEEeehhh
Confidence 35677788889988888777755 26999999999975411 1233433332 257999999999999
Q ss_pred cccccccCCC--eeEEEecceeEEeccH
Q 048389 216 GGAYIPAMAD--ESVMVKGNGTIFLAGP 241 (566)
Q Consensus 216 G~ay~~a~~d--~vi~v~~~a~i~~~GP 241 (566)
++++++..+| ..++. |++++.+..|
T Consensus 72 ~~~~i~~a~~~g~r~~~-p~a~~~ih~~ 98 (162)
T cd07013 72 MGSVIAMAGAKGKRFIL-PNAMMMIHQP 98 (162)
T ss_pred HHHHHHHcCCCCcEEEe-cCEEEEEccC
Confidence 9999888888 23433 5787776443
No 240
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=94.22 E-value=2.8 Score=42.38 Aligned_cols=93 Identities=16% Similarity=0.152 Sum_probs=61.8
Q ss_pred CccCHHHHHHHHHHHHHHhc-CCCcEEEEEecC-CCCCchHHHh------cchHHHHHHHHHHHHcCCCCEEEEEcCCCC
Q 048389 377 GILFHESALKGAHFIELCTQ-RKIPLVFLQNIT-GFMVGSRSEA------NGIAKAGAKMVMAVSCAKVPKVTIIVGGSF 448 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~-~~iPlV~l~dt~-G~~~g~~~E~------~g~~~~~a~~~~a~~~a~vP~isvi~g~~~ 448 (566)
.+++.+....+.++++.++. ..+=+|.|.-.+ .|..|.+-.. .........++..+.....|+|+.|-|.++
T Consensus 22 Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 101 (248)
T PRK06072 22 NALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIREIRFSDKIYISAINGVTA 101 (248)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeee
Confidence 68899999999998887654 445567665533 3444433211 111222345667788899999999999999
Q ss_pred chhh-hhhccCCCCCCEEEEecCceee
Q 048389 449 GAGN-YAMCGRAYSPNFMFLWPNARIS 474 (566)
Q Consensus 449 Ggg~-~am~~~~~~~d~~~A~p~A~i~ 474 (566)
|||. ++++ .|+++|-++++++
T Consensus 102 GgG~~lal~-----cD~~ia~~~a~f~ 123 (248)
T PRK06072 102 GACIGIALS-----TDFKFASRDVKFV 123 (248)
T ss_pred hHHHHHHHh-----CCEEEEcCCCEEe
Confidence 9986 4443 5888777766544
No 241
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=94.14 E-value=0.59 Score=54.81 Aligned_cols=152 Identities=16% Similarity=0.201 Sum_probs=87.9
Q ss_pred EEEecCccccccCChHHHHHHHHHHHHHHhCC-CcE-EEEEcC-----CCCCCCccccccC--ch----hhHHHHHHHHH
Q 048389 130 FVANDPTVKGGTYFPITIKKHLRAQEIAAQCK-LPC-IYLVDS-----GGAYLPKQAEVFP--DK----ENFGRIFYNQA 196 (566)
Q Consensus 130 v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~-lPl-V~l~ds-----gGarl~~~~~~~~--~~----~~~~~i~~~~a 196 (566)
+.-|.+...-=+++.....-+..+++.+.+.. +-. |.+.-. +|+.+.+-...-. .. ..+.+++..
T Consensus 26 itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~-- 103 (737)
T TIGR02441 26 VKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFER-- 103 (737)
T ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHH--
Confidence 33444432335788889999999998887654 433 344443 3344321100000 00 111233333
Q ss_pred HHcCCCcCEEEEEeccccccccccccCCCeeEEEecc-eeEEec--------------------cHH-HHHh-hhccccc
Q 048389 197 IMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGN-GTIFLA--------------------GPP-LVKA-ATGEEIS 253 (566)
Q Consensus 197 ~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~-a~i~~~--------------------GP~-vv~~-~~ge~v~ 253 (566)
+....+|+|+.|-|.|+|||.-++-.||+.|+.+.. +.+++. |+. +.+. .+|+.++
T Consensus 104 -i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~~~A~~l~ltG~~i~ 182 (737)
T TIGR02441 104 -IEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIR 182 (737)
T ss_pred -HHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhCHHHHHHHHHcCCcCC
Confidence 444579999999999999999998889999987542 344331 111 1111 2344444
Q ss_pred ccCCCcccccccccCcceEEEcc--h----------hHHHHHHHHHHHhc
Q 048389 254 AEDLGGAAVHCKTSGVSDYFAQD--E----------LHGLSLGRNIIKNL 291 (566)
Q Consensus 254 ~e~lGga~~h~~~sG~~d~v~~d--e----------~~a~~~~r~~ls~L 291 (566)
+.+.+ ..|++|.++++ + +++.+.++++...|
T Consensus 183 -----a~eA~--~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l 225 (737)
T TIGR02441 183 -----ADRAK--KMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGL 225 (737)
T ss_pred -----HHHHH--HCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHh
Confidence 44455 58999999975 1 44667777776554
No 242
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=94.01 E-value=3.1 Score=47.19 Aligned_cols=160 Identities=9% Similarity=0.059 Sum_probs=90.3
Q ss_pred ccCHHHHHHHHHHHHHHh--cCCCcEEEEEecC--CCCCchHHHh-c-----c---hHH----HHHHHHHHHHcCCCCEE
Q 048389 378 ILFHESALKGAHFIELCT--QRKIPLVFLQNIT--GFMVGSRSEA-N-----G---IAK----AGAKMVMAVSCAKVPKV 440 (566)
Q Consensus 378 ~l~~~~a~K~ar~i~l~~--~~~iPlV~l~dt~--G~~~g~~~E~-~-----g---~~~----~~a~~~~a~~~a~vP~i 440 (566)
+++.+....+.++++.++ ...+-+|.|.-.. .|..|.+-.. . . ... ....+..++....+|+|
T Consensus 48 al~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvI 127 (550)
T PRK08184 48 SYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFI 127 (550)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 688888888888888775 3567777776432 3554442110 0 0 001 11123445667899999
Q ss_pred EEEcCCCCchhhhhhccCCCCCCEEEEecC--ceeec--------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHH
Q 048389 441 TIIVGGSFGAGNYAMCGRAYSPNFMFLWPN--ARISV--------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKA 510 (566)
Q Consensus 441 svi~g~~~Ggg~~am~~~~~~~d~~~A~p~--A~i~v--------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (566)
+.|-|.|+|||..-.+ .+|++++-++ ++++. .+.-+...-+...+. ... . ...
T Consensus 128 AAVnG~a~GGG~~LAL----acD~rIas~~~~a~fg~pEv~~~Gl~P~~gg~~rl~~~~~---------vg~-~---~A~ 190 (550)
T PRK08184 128 AAVNGTCAGGGYELAL----ACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRVTDKRK---------VRR-D---LAD 190 (550)
T ss_pred EEECCEeehHHHHHHH----hCCEEEEecCCCcEEEccchhccccCCCcchHHHhhhhhh---------cCH-H---HHH
Confidence 9999999999875322 3577777765 45443 222111111100000 000 0 001
Q ss_pred HHHHHHHhhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCCC
Q 048389 511 KVVEAYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNRP 555 (566)
Q Consensus 511 ~l~~~~~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~~ 555 (566)
++. ..-+..++..+.+.|+||+|+++.++.+......+.+..++
T Consensus 191 ~ll-ltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~~ 234 (550)
T PRK08184 191 IFC-TIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAAS 234 (550)
T ss_pred HHH-HhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCC
Confidence 110 00112577788899999999999888777766666665543
No 243
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=94.01 E-value=0.31 Score=56.81 Aligned_cols=139 Identities=18% Similarity=0.185 Sum_probs=83.1
Q ss_pred ccCChHHHHHHHHHHHHHHhCC-CcEEEEE-c-----CCCCCCCcccccc--Cchh----hHHHHHHHHHHHcCCCcCEE
Q 048389 140 GTYFPITIKKHLRAQEIAAQCK-LPCIYLV-D-----SGGAYLPKQAEVF--PDKE----NFGRIFYNQAIMSAEGIPQI 206 (566)
Q Consensus 140 Gs~g~~~~~K~~r~~~lA~~~~-lPlV~l~-d-----sgGarl~~~~~~~--~~~~----~~~~i~~~~a~ls~~~VP~i 206 (566)
=+++....+-+..+++.+.+.. +-.|.|. . |+|+.+.+-.... .... .+..++. .+....+|+|
T Consensus 24 Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~kPvI 100 (699)
T TIGR02440 24 NTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFA---ELEALPIPVV 100 (699)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHH---HHHhCCCCEE
Confidence 4788888888888888776543 4445443 2 3455553211000 0000 1112232 3444578999
Q ss_pred EEEeccccccccccccCCCeeEEEec-ceeEEec-----------cHHHH----------H-hhhcccccccCCCccccc
Q 048389 207 ALVLGSCTAGGAYIPAMADESVMVKG-NGTIFLA-----------GPPLV----------K-AATGEEISAEDLGGAAVH 263 (566)
Q Consensus 207 svv~G~~~GG~ay~~a~~d~vi~v~~-~a~i~~~-----------GP~vv----------~-~~~ge~v~~e~lGga~~h 263 (566)
+.|-|.|+|||..++..||++|+.+. ++++++. |...+ + ..+|+.++++ +-+
T Consensus 101 AaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~~~a~-----eA~ 175 (699)
T TIGR02440 101 AAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAK-----QAL 175 (699)
T ss_pred EEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHHcCCcCCHH-----HHH
Confidence 99999999999999888999998763 2444331 11111 1 1245555543 344
Q ss_pred ccccCcceEEEcchhHHHHHHHHHHH
Q 048389 264 CKTSGVSDYFAQDELHGLSLGRNIIK 289 (566)
Q Consensus 264 ~~~sG~~d~v~~de~~a~~~~r~~ls 289 (566)
..|++|.+++++ +..+.++++..
T Consensus 176 --~~GLV~~vv~~~-~l~~~a~~~A~ 198 (699)
T TIGR02440 176 --KLGLVDDVVPQS-ILLDTAVEMAL 198 (699)
T ss_pred --hCCCCcEecChh-HHHHHHHHHHH
Confidence 589999999754 56677777775
No 244
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=93.92 E-value=0.22 Score=49.55 Aligned_cols=92 Identities=26% Similarity=0.344 Sum_probs=62.3
Q ss_pred ccCChHHHHHHHHHHHHHHhC-CCcEEEE-EcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEeccccccc
Q 048389 140 GTYFPITIKKHLRAQEIAAQC-KLPCIYL-VDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGG 217 (566)
Q Consensus 140 Gs~g~~~~~K~~r~~~lA~~~-~lPlV~l-~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG~ 217 (566)
+..+....+.+.+.++.|.+. ++-.|.| .||+|.-.. +...+...+.+++..+.|+|+.+-+ +.+|+
T Consensus 24 ~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~----------~~~el~~~i~~~~~~~kpVia~~~~-~~sgg 92 (222)
T cd07018 24 GESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLA----------KLEELRQALERFRASGKPVIAYADG-YSQGQ 92 (222)
T ss_pred CCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHH----------HHHHHHHHHHHHHHhCCeEEEEeCC-CCchh
Confidence 334456777888888887766 4665555 678776221 1123333344454447899999887 77777
Q ss_pred cccccCCCeeEEEecceeEEeccHHH
Q 048389 218 AYIPAMADESVMVKGNGTIFLAGPPL 243 (566)
Q Consensus 218 ay~~a~~d~vi~v~~~a~i~~~GP~v 243 (566)
.|+++.||.+++ .+++.+++.|.-.
T Consensus 93 y~lasaad~I~a-~p~~~vg~iGv~~ 117 (222)
T cd07018 93 YYLASAADEIYL-NPSGSVELTGLSA 117 (222)
T ss_pred hhhhhhCCEEEE-CCCceEEeeccch
Confidence 888888998775 6789999988654
No 245
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=93.88 E-value=0.22 Score=56.72 Aligned_cols=83 Identities=20% Similarity=0.134 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHHHhCC--CcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEeccccccccccc
Q 048389 144 PITIKKHLRAQEIAAQCK--LPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAYIP 221 (566)
Q Consensus 144 ~~~~~K~~r~~~lA~~~~--lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG~ay~~ 221 (566)
....+.+.+.++.|.+.. -.+|.-+||+|... + ..-.+...+.++...+.|+|+.+-|.|.+||.|++
T Consensus 328 ~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~------~----ase~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA 397 (584)
T TIGR00705 328 NTGGDTVAALLRVARSDPDIKAVVLRINSPGGSV------F----ASEIIRRELARAQARGKPVIVSMGAMAASGGYWIA 397 (584)
T ss_pred ccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCH------H----HHHHHHHHHHHHHhCCCcEEEEECCccccHHHHHH
Confidence 344567777888777664 36777899999633 1 11223344445555568999999999999999999
Q ss_pred cCCCeeEEEecceeEE
Q 048389 222 AMADESVMVKGNGTIF 237 (566)
Q Consensus 222 a~~d~vi~v~~~a~i~ 237 (566)
+.||.+++ .|++.++
T Consensus 398 ~aaD~I~a-~p~t~~G 412 (584)
T TIGR00705 398 SAADYIVA-SPNTITG 412 (584)
T ss_pred HhCCEEEE-CCCCeee
Confidence 99999765 6776553
No 246
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=93.86 E-value=0.41 Score=51.15 Aligned_cols=148 Identities=18% Similarity=0.196 Sum_probs=83.7
Q ss_pred EEEEEE-EecCccccccCChHHHHHHHHHHHHHHh-CCCcEEEEEcCC------CCCCCccccc----cCchhhHHHHHH
Q 048389 126 RLCMFV-ANDPTVKGGTYFPITIKKHLRAQEIAAQ-CKLPCIYLVDSG------GAYLPKQAEV----FPDKENFGRIFY 193 (566)
Q Consensus 126 r~v~v~-a~D~tv~gGs~g~~~~~K~~r~~~lA~~-~~lPlV~l~dsg------Garl~~~~~~----~~~~~~~~~i~~ 193 (566)
.-++.+ -|++..+. ++.....+.+..+++.+.. ..+-+|.|.-++ |+.+.+-.+. -.....+.+.+.
T Consensus 36 ~~~A~ItLNRP~k~N-Als~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~ 114 (360)
T TIGR03200 36 LYNAWIILDNPKQYN-SYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFN 114 (360)
T ss_pred eEEEEEEECCCCccC-CCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHH
Confidence 334433 44455434 7888899999999987764 456677775443 3333211000 000111222221
Q ss_pred H-HHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEeccHH-----------HHHhhhccc------cccc
Q 048389 194 N-QAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPP-----------LVKAATGEE------ISAE 255 (566)
Q Consensus 194 ~-~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~GP~-----------vv~~~~ge~------v~~e 255 (566)
. ...+....+|+|+.|-|.|+|||.-++..||++|+.+ ++++++.... .+....|.. ++.+
T Consensus 115 ~l~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse-~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe 193 (360)
T TIGR03200 115 DMVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQD-LANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCE 193 (360)
T ss_pred HHHHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcC-CCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCC
Confidence 1 1234445789999999999999999988899988654 6766652221 122222211 1223
Q ss_pred CCCcccccccccCcceEEEcch
Q 048389 256 DLGGAAVHCKTSGVSDYFAQDE 277 (566)
Q Consensus 256 ~lGga~~h~~~sG~~d~v~~de 277 (566)
.+.+.+.+ ..|++|.+++++
T Consensus 194 ~~sA~EA~--~~GLVd~VVp~~ 213 (360)
T TIGR03200 194 PWSAHKAK--RLGIIMDVVPAL 213 (360)
T ss_pred cCcHHHHH--HcCChheecCch
Confidence 34444455 489999998754
No 247
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=93.61 E-value=2.2 Score=46.18 Aligned_cols=145 Identities=14% Similarity=0.103 Sum_probs=84.5
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEecC-CCCCchHH-H-----hcch-------HHHHHHHHHHHHcCCCCEEE
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNIT-GFMVGSRS-E-----ANGI-------AKAGAKMVMAVSCAKVPKVT 441 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt~-G~~~g~~~-E-----~~g~-------~~~~a~~~~a~~~a~vP~is 441 (566)
.+++.+....+.+.++-+. ...+-+|+|.-.+ .|.-|.+- + ..+. .+..-.+.+.+.....|+|+
T Consensus 31 NALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIa 110 (381)
T PLN02988 31 NALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVS 110 (381)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 6788999999988887654 5667777776544 34433211 1 1111 11111234567789999999
Q ss_pred EEcCCCCchhhh-hhccCCCCCCEEEEecC-------ceeeccCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHH
Q 048389 442 IIVGGSFGAGNY-AMCGRAYSPNFMFLWPN-------ARISVMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVV 513 (566)
Q Consensus 442 vi~g~~~Ggg~~-am~~~~~~~d~~~A~p~-------A~i~vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 513 (566)
+|-|.++|||.- ++ .+|+.+|-++ +.||+...-+....+.+. ... ....|.
T Consensus 111 ~v~G~a~GGG~~Lal-----~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl------------~G~----~~~~l~ 169 (381)
T PLN02988 111 ILNGIVMGGGAGVSV-----HGRFRIATENTVFAMPETALGLFPDVGASYFLSRL------------PGF----FGEYVG 169 (381)
T ss_pred EecCeEeehhhHHhh-----cCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHH------------HHH----HHHHHH
Confidence 999999999853 33 3466666555 555554433444333221 000 000010
Q ss_pred HHHHhhCCHHHHHhCcccceecCchhhHHH
Q 048389 514 EAYEKEGNAYYSTARLWDDGIIDPADTRKI 543 (566)
Q Consensus 514 ~~~~~~~~~~~aa~~g~iD~II~p~~tR~~ 543 (566)
..-+..++..+...|++|.++++.++-..
T Consensus 170 -LTG~~i~a~eA~~~GLv~~vv~~~~l~~~ 198 (381)
T PLN02988 170 -LTGARLDGAEMLACGLATHFVPSTRLTAL 198 (381)
T ss_pred -HcCCCCCHHHHHHcCCceEecCHhHHHHH
Confidence 00112577788899999999998776654
No 248
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=93.45 E-value=0.55 Score=50.80 Aligned_cols=151 Identities=15% Similarity=0.170 Sum_probs=84.6
Q ss_pred ECCEEEEEEEecCccccccCChHHHHHHHHHHHHHHh-CCCcEEEEEcCC-----CCCCCccccc--cCchhhHHHHH--
Q 048389 123 VHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQ-CKLPCIYLVDSG-----GAYLPKQAEV--FPDKENFGRIF-- 192 (566)
Q Consensus 123 I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~-~~lPlV~l~dsg-----Garl~~~~~~--~~~~~~~~~i~-- 192 (566)
.+|.-..|.-|.+..+. ++...-...+..+++-+.+ ..+-+|.|.-+| |..+.+-... .+........|
T Consensus 15 ~~~~i~~ItLnRP~~lN-ALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~ 93 (381)
T PLN02988 15 EKSSVRILTLNRPKQLN-ALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGANFFSD 93 (381)
T ss_pred EECCEEEEEECCCCccC-CCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHHHHHH
Confidence 34544455566665444 7888888888888876654 456666665433 3333210000 00000001112
Q ss_pred --HHHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-------c----cHHHHHhhhc---cc--ccc
Q 048389 193 --YNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-------A----GPPLVKAATG---EE--ISA 254 (566)
Q Consensus 193 --~~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-------~----GP~vv~~~~g---e~--v~~ 254 (566)
.....+.....|+|++|-|.|+|||..+...||+.|+. +++++.+ . |.-.+....| .. ++.
T Consensus 94 ~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvat-e~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~~~~~l~LTG 172 (381)
T PLN02988 94 EYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIAT-ENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTG 172 (381)
T ss_pred HHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEc-CCcEEeChhhhcCcCCCccHHHHHHHHHHHHHHHHHHcC
Confidence 11123344578999999999999999998899998875 4555432 1 1111211111 11 234
Q ss_pred cCCCcccccccccCcceEEEcch
Q 048389 255 EDLGGAAVHCKTSGVSDYFAQDE 277 (566)
Q Consensus 255 e~lGga~~h~~~sG~~d~v~~de 277 (566)
+.+.+.+.+ ..|++|++++++
T Consensus 173 ~~i~a~eA~--~~GLv~~vv~~~ 193 (381)
T PLN02988 173 ARLDGAEML--ACGLATHFVPST 193 (381)
T ss_pred CCCCHHHHH--HcCCceEecCHh
Confidence 455566666 489999999754
No 249
>PRK11778 putative inner membrane peptidase; Provisional
Probab=93.43 E-value=0.3 Score=51.70 Aligned_cols=82 Identities=16% Similarity=0.178 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEeccccccccccccCCCee
Q 048389 148 KKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADES 227 (566)
Q Consensus 148 ~K~~r~~~lA~~~~lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~v 227 (566)
+.+..+.+.|... --+|.-+||||..... ++.+...+.+++..++|+++.+-+-|..||.|+++.||.+
T Consensus 111 e~i~a~l~~A~~~-~aVvLridSpGG~v~~----------s~~a~~~l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I 179 (330)
T PRK11778 111 EEITAILAVAKPG-DEVLLRLESPGGVVHG----------YGLAASQLQRLRDAGIPLTVAVDKVAASGGYMMACVADKI 179 (330)
T ss_pred HHHHHHHHhccCC-CeEEEEEeCCCCchhH----------HHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHHhCCEE
Confidence 4444445555544 3488889999975521 1222333444555579999999888988888888889986
Q ss_pred EEEecceeEEeccH
Q 048389 228 VMVKGNGTIFLAGP 241 (566)
Q Consensus 228 i~v~~~a~i~~~GP 241 (566)
+ +.|.+.++..|.
T Consensus 180 ~-A~P~a~vGSIGV 192 (330)
T PRK11778 180 I-AAPFAIVGSIGV 192 (330)
T ss_pred E-ECCCCeEEeeee
Confidence 6 578888877774
No 250
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=93.07 E-value=0.97 Score=52.85 Aligned_cols=154 Identities=18% Similarity=0.178 Sum_probs=87.7
Q ss_pred EEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEc------CCCCCCCcccccc--CchhhHHHHHH-HHHHH
Q 048389 129 MFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVD------SGGAYLPKQAEVF--PDKENFGRIFY-NQAIM 198 (566)
Q Consensus 129 ~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~d------sgGarl~~~~~~~--~~~~~~~~i~~-~~a~l 198 (566)
.+.-|++.-..=+++....+.+..+++.+... .+-+|.|.- |+|+.+.+-.... .....+.+.+. ....+
T Consensus 18 ~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 97 (708)
T PRK11154 18 VITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEI 97 (708)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHH
Confidence 34444442233478888888899888877654 445555542 2344443210000 00001111111 12234
Q ss_pred cCCCcCEEEEEeccccccccccccCCCeeEEEec-ceeEEe-----------ccHHHH----------Hh-hhccccccc
Q 048389 199 SAEGIPQIALVLGSCTAGGAYIPAMADESVMVKG-NGTIFL-----------AGPPLV----------KA-ATGEEISAE 255 (566)
Q Consensus 199 s~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~-~a~i~~-----------~GP~vv----------~~-~~ge~v~~e 255 (566)
....+|+|+.|-|.|+|||.-++..||++|+.+. ++++++ .|...+ +. .+|+.++++
T Consensus 98 ~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A~~llltG~~i~a~ 177 (708)
T PRK11154 98 EALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAK 177 (708)
T ss_pred HhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHHHHHHHhCCcCCHH
Confidence 4457999999999999999999888999988753 234432 111111 11 345555543
Q ss_pred CCCcccccccccCcceEEEcchhHHHHHHHHHHHh
Q 048389 256 DLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKN 290 (566)
Q Consensus 256 ~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~ 290 (566)
+.+ .-|++|.++++ ++..+.++++...
T Consensus 178 -----eA~--~~GLv~~vv~~-~~l~~~a~~~A~~ 204 (708)
T PRK11154 178 -----QAL--KLGLVDDVVPH-SILLEVAVELAKK 204 (708)
T ss_pred -----HHH--HCCCCcEecCh-HHHHHHHHHHHHh
Confidence 344 58999999975 4566777777655
No 251
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=92.81 E-value=1.2 Score=52.01 Aligned_cols=146 Identities=16% Similarity=0.153 Sum_probs=84.8
Q ss_pred ccccCChHHHHHHHHHHHHHHhCC-CcEEEEEcC-----CCCCCCccccc--cCc-----h-hhHHHHHHHHHHHcCCCc
Q 048389 138 KGGTYFPITIKKHLRAQEIAAQCK-LPCIYLVDS-----GGAYLPKQAEV--FPD-----K-ENFGRIFYNQAIMSAEGI 203 (566)
Q Consensus 138 ~gGs~g~~~~~K~~r~~~lA~~~~-lPlV~l~ds-----gGarl~~~~~~--~~~-----~-~~~~~i~~~~a~ls~~~V 203 (566)
.--+++....+.+..+++.+.... +-+|.|.-+ +|+.+.+-.+. .+. . ....+++. .+....+
T Consensus 27 ~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~pk 103 (714)
T TIGR02437 27 SVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQWLLFANSIFN---KLEDLPV 103 (714)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHH---HHHhCCC
Confidence 445788999999999998776544 455555443 33333210000 000 0 01112332 3444579
Q ss_pred CEEEEEeccccccccccccCCCeeEEEecceeEEe-----------ccHHHHHhhhccc------ccccCCCcccccccc
Q 048389 204 PQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-----------AGPPLVKAATGEE------ISAEDLGGAAVHCKT 266 (566)
Q Consensus 204 P~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-----------~GP~vv~~~~ge~------v~~e~lGga~~h~~~ 266 (566)
|+|++|-|.|+|||.-++..||++|+.+ ++++++ .|.--+....|.. ++.+.+.+.+.+ .
T Consensus 104 PvIAai~G~alGGGleLalacD~ria~~-~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~llltG~~~~A~eA~--~ 180 (714)
T TIGR02437 104 PTVAAINGIALGGGCECVLATDFRIADD-TAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAEDAL--K 180 (714)
T ss_pred CEEEEECCeeecHHHHHHHhCCEEEEeC-CCEEecchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHH--H
Confidence 9999999999999999988899988764 677654 1111111112211 122333344445 5
Q ss_pred cCcceEEEcchhHHHHHHHHHHHh
Q 048389 267 SGVSDYFAQDELHGLSLGRNIIKN 290 (566)
Q Consensus 267 sG~~d~v~~de~~a~~~~r~~ls~ 290 (566)
.|++|.++++ ++..+.++++..-
T Consensus 181 ~GLvd~vv~~-~~l~~~a~~~a~~ 203 (714)
T TIGR02437 181 VGAVDAVVTA-DKLGAAALQLLKD 203 (714)
T ss_pred CCCCcEeeCh-hHHHHHHHHHHHH
Confidence 8999999965 3566677666644
No 252
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=92.75 E-value=1 Score=52.69 Aligned_cols=153 Identities=17% Similarity=0.161 Sum_probs=87.3
Q ss_pred EEEEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEcCC-----CCCCCcccccc-Cc---hhhHHHHHH-HHHH
Q 048389 129 MFVANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVDSG-----GAYLPKQAEVF-PD---KENFGRIFY-NQAI 197 (566)
Q Consensus 129 ~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~dsg-----Garl~~~~~~~-~~---~~~~~~i~~-~~a~ 197 (566)
.|.-|++. .--+++......+..+++.+... .+-+|.|.-++ |+.+.+-.... .. ...+.+.+. ....
T Consensus 19 ~itlnrp~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
T PRK11730 19 ELVFDAPG-SVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNR 97 (715)
T ss_pred EEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHH
Confidence 33445444 33478888888899988877654 45566665433 33332100000 00 001111111 1223
Q ss_pred HcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEec-----------cHHHHHh-----------hhccccccc
Q 048389 198 MSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLA-----------GPPLVKA-----------ATGEEISAE 255 (566)
Q Consensus 198 ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~-----------GP~vv~~-----------~~ge~v~~e 255 (566)
+.....|+|+.|-|.|+|||.-++..||++|+. +++++++. |...+.. .+|+.+++
T Consensus 98 i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~-~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~llltG~~~~A- 175 (715)
T PRK11730 98 LEDLPVPTVAAINGYALGGGCECVLATDYRVAS-PDARIGLPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRA- 175 (715)
T ss_pred HHcCCCCEEEEECCEeehHHHHHHHhCCEEEEc-CCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHHHHHcCCcCCH-
Confidence 444578999999999999999998899998876 46766541 1111111 23444444
Q ss_pred CCCcccccccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 256 DLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 256 ~lGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
.+.+ .-|++|.+++++ +..+.++++..-+
T Consensus 176 ----~eA~--~~GLv~~vv~~~-~l~~~a~~~a~~l 204 (715)
T PRK11730 176 ----EDAL--KVGAVDAVVAPE-KLQEAALALLKQA 204 (715)
T ss_pred ----HHHH--HCCCCeEecCHH-HHHHHHHHHHHHH
Confidence 4445 489999999754 4555666555443
No 253
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=92.73 E-value=3.5 Score=48.54 Aligned_cols=140 Identities=16% Similarity=0.193 Sum_probs=81.1
Q ss_pred CccCHHHHHHHHHHHHHHhcC-CCc-EEEEEecC-CCCCchHH-H---------hcchHHHHHHHHHHHHcCCCCEEEEE
Q 048389 377 GILFHESALKGAHFIELCTQR-KIP-LVFLQNIT-GFMVGSRS-E---------ANGIAKAGAKMVMAVSCAKVPKVTII 443 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~~-~iP-lV~l~dt~-G~~~g~~~-E---------~~g~~~~~a~~~~a~~~a~vP~isvi 443 (566)
.+++.+....+...++.+++. .+- +|++.-.+ .|..|.+- | ..........++..+..+.+|+|+.|
T Consensus 36 Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav 115 (737)
T TIGR02441 36 NTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAAI 115 (737)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 457888888888888877543 343 44555443 34333321 1 11122344567788999999999999
Q ss_pred cCCCCchhhh-hhccCCCCCCEEEEecCc--e-------eeccCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHH
Q 048389 444 VGGSFGAGNY-AMCGRAYSPNFMFLWPNA--R-------ISVMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVV 513 (566)
Q Consensus 444 ~g~~~Ggg~~-am~~~~~~~d~~~A~p~A--~-------i~vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 513 (566)
-|.|+|||.- ++ .+|+.+|.+++ + +|+...-+....+.+. +... .+ .++.
T Consensus 116 ~G~a~GgG~eLAL-----acD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprl-----------iG~~--~A--~~l~ 175 (737)
T TIGR02441 116 SGSCLGGGLELAL-----ACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKL-----------TGVP--AA--LDMM 175 (737)
T ss_pred CCEeecHHHHHHH-----hCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHh-----------hCHH--HH--HHHH
Confidence 9999999864 44 35777777663 3 3433333322222110 0000 00 0111
Q ss_pred HHHHhhCCHHHHHhCcccceecCc
Q 048389 514 EAYEKEGNAYYSTARLWDDGIIDP 537 (566)
Q Consensus 514 ~~~~~~~~~~~aa~~g~iD~II~p 537 (566)
- .-+..++..+.+.|+||+|+++
T Consensus 176 l-tG~~i~a~eA~~~GLVd~vv~~ 198 (737)
T TIGR02441 176 L-TGKKIRADRAKKMGIVDQLVDP 198 (737)
T ss_pred H-cCCcCCHHHHHHCCCCeEecCC
Confidence 0 0112477788899999999998
No 254
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=92.70 E-value=2.8 Score=47.55 Aligned_cols=159 Identities=10% Similarity=0.084 Sum_probs=89.7
Q ss_pred CccCHHHHHHHHHHHHHHh--cCCCcEEEEEec--CCCCCchHHHhcc---------hHHHH----HHHHHHHHcCCCCE
Q 048389 377 GILFHESALKGAHFIELCT--QRKIPLVFLQNI--TGFMVGSRSEANG---------IAKAG----AKMVMAVSCAKVPK 439 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~--~~~iPlV~l~dt--~G~~~g~~~E~~g---------~~~~~----a~~~~a~~~a~vP~ 439 (566)
.+++.+....+.+.++-.+ ...+.+|.|.-. +.|..|.+-...+ ..... ..+...+.....|+
T Consensus 43 Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPv 122 (546)
T TIGR03222 43 NSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKF 122 (546)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCE
Confidence 4577888888888887665 456788888632 2344443211100 00111 12344566789999
Q ss_pred EEEEcCCCCchhhh-hhccCCCCCCEEEEecC--ceeec--------cCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHH
Q 048389 440 VTIIVGGSFGAGNY-AMCGRAYSPNFMFLWPN--ARISV--------MGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMF 508 (566)
Q Consensus 440 isvi~g~~~Ggg~~-am~~~~~~~d~~~A~p~--A~i~v--------mg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~ 508 (566)
|+.|-|.|+|||.- ++ .+|+++|-++ +++++ .+.-+....+..... ... . .
T Consensus 123 IAAVnG~a~GGG~~LAL-----acD~rvAs~~a~a~f~~pEv~~lGl~P~~gg~~~l~~~~~---------vg~-~---~ 184 (546)
T TIGR03222 123 LAAVNGTCAGGGYELAL-----ACDEIMLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRR---------VRR-D---H 184 (546)
T ss_pred EEEECCEeehHHHHHHH-----hCCEEEEecCCCcEEEccchhccCcCCccchhhhccccch---------hCH-H---H
Confidence 99999999999864 33 3577777764 34443 322222111100000 000 0 0
Q ss_pred HHHHHHHH-HhhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCCC
Q 048389 509 KAKVVEAY-EKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNRP 555 (566)
Q Consensus 509 ~~~l~~~~-~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~~ 555 (566)
..++. + -+..++..+.+.|+||+|+++.++.+...+..+.+...+
T Consensus 185 A~~ll--ltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~ 230 (546)
T TIGR03222 185 ADIFC--TIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQS 230 (546)
T ss_pred HHHHH--HcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhCC
Confidence 01110 1 112467778899999999999988887776666666543
No 255
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=92.30 E-value=2.6 Score=49.30 Aligned_cols=149 Identities=16% Similarity=0.170 Sum_probs=86.5
Q ss_pred CccCHHHHHHHHHHHHHHhc-CCCcEEEE-EecC-CCCCchH-HH---------hcchHHHHHHHHHHHHcCCCCEEEEE
Q 048389 377 GILFHESALKGAHFIELCTQ-RKIPLVFL-QNIT-GFMVGSR-SE---------ANGIAKAGAKMVMAVSCAKVPKVTII 443 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~~-~~iPlV~l-~dt~-G~~~g~~-~E---------~~g~~~~~a~~~~a~~~a~vP~isvi 443 (566)
.+++.+....+.+.++-++. ..+-.|.| ...+ .|..|.+ .| .......+..++..+....+|+|+.|
T Consensus 24 Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV 103 (699)
T TIGR02440 24 NTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAELEALPIPVVAAI 103 (699)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 56888888888888876653 44445544 3332 2333322 11 11112234456778999999999999
Q ss_pred cCCCCchhhh-hhccCCCCCCEEEEe---------cCceeeccCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHH
Q 048389 444 VGGSFGAGNY-AMCGRAYSPNFMFLW---------PNARISVMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVV 513 (566)
Q Consensus 444 ~g~~~Ggg~~-am~~~~~~~d~~~A~---------p~A~i~vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 513 (566)
-|.|+|||.- +++ +|+++|- |..++|+...-+....+.+. +.... + .++.
T Consensus 104 nG~a~GgG~~LaLa-----cD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~-----------vG~~~--A--~~ll 163 (699)
T TIGR02440 104 HGACLGGGLELALA-----CHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRL-----------IGVST--A--LDMI 163 (699)
T ss_pred CCEeecHHHHHHHh-----CCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHh-----------cCHHH--H--HHHH
Confidence 9999999864 443 3555554 55666665544444333211 01100 0 1111
Q ss_pred HHHHhhCCHHHHHhCcccceecCchhhHHHHHH
Q 048389 514 EAYEKEGNAYYSTARLWDDGIIDPADTRKIIGF 546 (566)
Q Consensus 514 ~~~~~~~~~~~aa~~g~iD~II~p~~tR~~L~~ 546 (566)
- .-+..++..+.+.|++|+|+++.++-+...+
T Consensus 164 l-tG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~ 195 (699)
T TIGR02440 164 L-TGKQLRAKQALKLGLVDDVVPQSILLDTAVE 195 (699)
T ss_pred H-cCCcCCHHHHHhCCCCcEecChhHHHHHHHH
Confidence 0 0122578888999999999998776554433
No 256
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=91.73 E-value=3.6 Score=42.30 Aligned_cols=109 Identities=16% Similarity=0.104 Sum_probs=71.4
Q ss_pred CCeEEEEEEeC-----CccCHHHHHHHHHHHH-HHhcCCCcEEEEEecCCC-CCchHHHhcchHHH-------HHHHHHH
Q 048389 366 FGQPVGIIGNN-----GILFHESALKGAHFIE-LCTQRKIPLVFLQNITGF-MVGSRSEANGIAKA-------GAKMVMA 431 (566)
Q Consensus 366 ~G~~Vgvvan~-----G~l~~~~a~K~ar~i~-l~~~~~iPlV~l~dt~G~-~~g~~~E~~g~~~~-------~a~~~~a 431 (566)
....|++|.-| .+++.......++.+. +-+....|++.|.-..+. --|.+-+..-...+ .-+....
T Consensus 43 ~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~ 122 (290)
T KOG1680|consen 43 EDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIFLRVWDL 122 (290)
T ss_pred cCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccccccchhhh
Confidence 34667888765 7888888888888555 555677899999876543 22222111111000 1123344
Q ss_pred HHcCCCCEEEEEcCCCCchhhh-hhccCCCCCCEEEEecCceeeccCHH
Q 048389 432 VSCAKVPKVTIIVGGSFGAGNY-AMCGRAYSPNFMFLWPNARISVMGGA 479 (566)
Q Consensus 432 ~~~a~vP~isvi~g~~~Ggg~~-am~~~~~~~d~~~A~p~A~i~vmg~e 479 (566)
++..+.|+|+.|-|-+.|||.- +| ..|++||-|+|.+++-.++
T Consensus 123 ~~~~~KPvIaainG~AlgGG~ELal-----mCDirva~~~Akfg~~~~~ 166 (290)
T KOG1680|consen 123 VSRLKKPVIAAINGFALGGGLELAL-----MCDIRVAGEGAKFGFFEIR 166 (290)
T ss_pred hhhcccceeEeeeceeeccchhhhh-----hcceEeccCCCeecccccc
Confidence 5577889999999999999874 43 4689999988888875554
No 257
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=91.32 E-value=0.52 Score=46.62 Aligned_cols=90 Identities=13% Similarity=0.143 Sum_probs=64.8
Q ss_pred cccCChHHHHHHHHHHHHHHhC--CCcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEecccccc
Q 048389 139 GGTYFPITIKKHLRAQEIAAQC--KLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAG 216 (566)
Q Consensus 139 gGs~g~~~~~K~~r~~~lA~~~--~lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG 216 (566)
+|.+++..+..+.+.+..+... .-|++..++|+|..+.. .-.++..+.. ...|+++++.|.|.+.
T Consensus 41 ~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~----------g~~I~d~i~~---~~~~v~t~~~G~aaSa 107 (207)
T PRK12553 41 GGQVDDASANDVMAQLLVLESIDPDRDITLYINSPGGSVTA----------GDAIYDTIQF---IRPDVQTVCTGQAASA 107 (207)
T ss_pred cceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHH----------HHHHHHHHHh---cCCCcEEEEEeehhhH
Confidence 4667788899988888777654 57999999999965421 1123333222 3579999999999999
Q ss_pred ccccccCCCe--eEEEecceeEEeccHH
Q 048389 217 GAYIPAMADE--SVMVKGNGTIFLAGPP 242 (566)
Q Consensus 217 ~ay~~a~~d~--vi~v~~~a~i~~~GP~ 242 (566)
|+++...+|. .+| .+++.+.+..|.
T Consensus 108 a~lI~~ag~~~~R~~-~p~s~imiH~p~ 134 (207)
T PRK12553 108 GAVLLAAGTPGKRFA-LPNARILIHQPS 134 (207)
T ss_pred HHHHHHcCCcCcEEE-CCCchhhhcCcc
Confidence 8888777873 454 568888887763
No 258
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=91.17 E-value=0.65 Score=47.61 Aligned_cols=89 Identities=19% Similarity=0.106 Sum_probs=66.1
Q ss_pred ccCChHHHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEeccccccccc
Q 048389 140 GTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAY 219 (566)
Q Consensus 140 Gs~g~~~~~K~~r~~~lA~~~~lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG~ay 219 (566)
..+.....+.+.|+++.+.+.+ |+..+.+|+|...- + .-++...+. ....|+..+|-..|..+|++
T Consensus 70 ~~I~i~dse~v~raI~~~~~~~-~IdLii~TpGG~v~-------A---A~~I~~~l~---~~~~~v~v~VP~~A~SAGTl 135 (285)
T PF01972_consen 70 RYIDIDDSEFVLRAIREAPKDK-PIDLIIHTPGGLVD-------A---AEQIARALR---EHPAKVTVIVPHYAMSAGTL 135 (285)
T ss_pred eeEcHhhHHHHHHHHHhcCCCC-ceEEEEECCCCcHH-------H---HHHHHHHHH---hCCCCEEEEECcccccHHHH
Confidence 4566778889999999987765 89999999997651 1 123333322 23579999999999999999
Q ss_pred cccCCCeeEEEecceeEEeccHHH
Q 048389 220 IPAMADESVMVKGNGTIFLAGPPL 243 (566)
Q Consensus 220 ~~a~~d~vi~v~~~a~i~~~GP~v 243 (566)
.+-.||.++|. ++|.|+-.-|.+
T Consensus 136 IALaADeIvM~-p~a~LGpiDPqi 158 (285)
T PF01972_consen 136 IALAADEIVMG-PGAVLGPIDPQI 158 (285)
T ss_pred HHHhCCeEEEC-CCCccCCCCccc
Confidence 98889999885 578787665543
No 259
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.94 E-value=6.8 Score=45.91 Aligned_cols=150 Identities=13% Similarity=0.176 Sum_probs=87.0
Q ss_pred CccCHHHHHHHHHHHHHHh-cCCCcEEEEEec--CCCCCchHH-Hh---------cchHHHHHHHHHHHHcCCCCEEEEE
Q 048389 377 GILFHESALKGAHFIELCT-QRKIPLVFLQNI--TGFMVGSRS-EA---------NGIAKAGAKMVMAVSCAKVPKVTII 443 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~~-~~~iPlV~l~dt--~G~~~g~~~-E~---------~g~~~~~a~~~~a~~~a~vP~isvi 443 (566)
.+++.+....+.++++.++ ...+-.|.|.-. ..|..|.+- |. ....+....++.++....+|+|+.|
T Consensus 29 Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV 108 (708)
T PRK11154 29 NTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVAAI 108 (708)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 4688888888888888665 445566666532 235444321 11 1111233456788889999999999
Q ss_pred cCCCCchhh-hhhccCCCCCCEEEEecC---------ceeeccCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHH
Q 048389 444 VGGSFGAGN-YAMCGRAYSPNFMFLWPN---------ARISVMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVV 513 (566)
Q Consensus 444 ~g~~~Ggg~-~am~~~~~~~d~~~A~p~---------A~i~vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 513 (566)
-|.|+|||. ++++ +|+++|.++ .++|+...-+....+.+. +... . ++ +-+.
T Consensus 109 ~G~a~GgG~~Lala-----cD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~-----------vG~~-~-A~-~lll 169 (708)
T PRK11154 109 HGACLGGGLELALA-----CHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRL-----------IGVS-T-AL-DMIL 169 (708)
T ss_pred CCeeechHHHHHHh-----CCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhh-----------cCHH-H-HH-HHHH
Confidence 999999986 3443 477766654 344554433333322210 0110 0 00 1111
Q ss_pred HHHHhhCCHHHHHhCcccceecCchhhHHHHHHH
Q 048389 514 EAYEKEGNAYYSTARLWDDGIIDPADTRKIIGFC 547 (566)
Q Consensus 514 ~~~~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~ 547 (566)
. -+..++..+.+.|++|+|+++.++-+.....
T Consensus 170 t--G~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~ 201 (708)
T PRK11154 170 T--GKQLRAKQALKLGLVDDVVPHSILLEVAVEL 201 (708)
T ss_pred h--CCcCCHHHHHHCCCCcEecChHHHHHHHHHH
Confidence 0 1125788889999999999987765443333
No 260
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=90.68 E-value=0.48 Score=45.24 Aligned_cols=91 Identities=16% Similarity=0.151 Sum_probs=64.4
Q ss_pred cccccCChHHHHHHHHHHHHHHhCC--CcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEecccc
Q 048389 137 VKGGTYFPITIKKHLRAQEIAAQCK--LPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCT 214 (566)
Q Consensus 137 v~gGs~g~~~~~K~~r~~~lA~~~~--lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~ 214 (566)
+.+|.+.+..+..+...+..+...+ -|++..++|+|..+.. .-.++..+.. ...|+.+++.|.|.
T Consensus 13 ~i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~----------~~~i~~~l~~---~~~~v~t~~~g~aa 79 (171)
T cd07017 13 FLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTA----------GLAIYDTMQY---IKPPVSTICLGLAA 79 (171)
T ss_pred EEcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCCCCHHH----------HHHHHHHHHh---cCCCEEEEEEeEeh
Confidence 3457777888888888887777653 6899999999975421 1123333222 25899999999999
Q ss_pred ccccccccCCC--eeEEEecceeEEeccH
Q 048389 215 AGGAYIPAMAD--ESVMVKGNGTIFLAGP 241 (566)
Q Consensus 215 GG~ay~~a~~d--~vi~v~~~a~i~~~GP 241 (566)
+.+++..+.+| ..+|. +++.+.+..|
T Consensus 80 S~~~~i~~~g~~~~r~~~-~~a~~~~h~~ 107 (171)
T cd07017 80 SMGALLLAAGTKGKRYAL-PNSRIMIHQP 107 (171)
T ss_pred hHHHHHHHcCCCCCEEEc-cchHHHHcCC
Confidence 99999888888 56664 5777766554
No 261
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=90.03 E-value=1.3 Score=43.49 Aligned_cols=92 Identities=13% Similarity=0.089 Sum_probs=62.5
Q ss_pred cccccCChHHHHHHHHHHHHHHhC--CCcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEecccc
Q 048389 137 VKGGTYFPITIKKHLRAQEIAAQC--KLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCT 214 (566)
Q Consensus 137 v~gGs~g~~~~~K~~r~~~lA~~~--~lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~ 214 (566)
+.+|.++...+..+.+-+...... .-|+..+.+|+|..... .-.++..+ .....|+++++.|.|+
T Consensus 35 ~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~~----------g~~I~d~i---~~~~~~v~t~~~G~aa 101 (200)
T PRK00277 35 FLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTA----------GLAIYDTM---QFIKPDVSTICIGQAA 101 (200)
T ss_pred EECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCcHHH----------HHHHHHHH---HhcCCCEEEEEEeEec
Confidence 346788888888887777666543 56899999999964411 11233332 2235799999999999
Q ss_pred ccccccccCCC--eeEEEecceeEEeccHH
Q 048389 215 AGGAYIPAMAD--ESVMVKGNGTIFLAGPP 242 (566)
Q Consensus 215 GG~ay~~a~~d--~vi~v~~~a~i~~~GP~ 242 (566)
+.|++++..++ ..+| -|++++.+.-|.
T Consensus 102 S~a~~I~~ag~~~~r~~-~p~s~imih~p~ 130 (200)
T PRK00277 102 SMGAFLLAAGAKGKRFA-LPNSRIMIHQPL 130 (200)
T ss_pred cHHHHHHhcCCCCCEEE-cCCceEEeccCc
Confidence 99888755443 4555 467888877653
No 262
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=89.51 E-value=0.56 Score=43.97 Aligned_cols=111 Identities=15% Similarity=0.133 Sum_probs=60.8
Q ss_pred HcCCCCEEEEEcCCCCchhhhhhccCCCCCCEEEEecCceeeccCHHH----HHHHHhh--hhh-----hhhhhc---CC
Q 048389 433 SCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGAQ----AAGVLSQ--VEK-----DKKKKQ---GI 498 (566)
Q Consensus 433 ~~a~vP~isvi~g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~vmg~e~----aa~i~~~--~~~-----~~~~~~---~~ 498 (566)
..++.|+++++-+-+.+++||..+ .+|-+||-|.+.+|..|.-. ....+.+ ++. ..-+.. -.
T Consensus 3 ~~~~KpV~a~~~~~~~S~~Y~lAs----~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~ 78 (154)
T PF01343_consen 3 KASGKPVVAYAEGYAASGAYYLAS----AADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRD 78 (154)
T ss_dssp HHTT--EEEEEEEEEETHHHHHHT----TSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTS
T ss_pred cccCCeEEEEECCcchhHHHHHHH----cCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCC
Confidence 457889999999888878888554 36889999999999877531 1112211 100 011111 12
Q ss_pred CCchHHHHHHHHHHHHHHHhh-----------------------CCHHHHHhCcccceecCchhhHHHHHHH
Q 048389 499 EWTKQEEEMFKAKVVEAYEKE-----------------------GNAYYSTARLWDDGIIDPADTRKIIGFC 547 (566)
Q Consensus 499 ~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~aa~~g~iD~II~p~~tR~~L~~~ 547 (566)
++++++++.+++.|.+.|+.. -++..+.+.|+||+|-...|.-+.|...
T Consensus 79 ~~s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~ 150 (154)
T PF01343_consen 79 PMSEEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAKL 150 (154)
T ss_dssp S--HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHHH
Confidence 345566655555444444321 1345567999999999888777766543
No 263
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.31 E-value=2.2 Score=45.93 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=13.7
Q ss_pred CCEEEEEEEecCccccccCC
Q 048389 124 HGRLCMFVANDPTVKGGTYF 143 (566)
Q Consensus 124 ~Gr~v~v~a~D~tv~gGs~g 143 (566)
.|..|+++|-| ||+.|++.
T Consensus 128 kG~K~~LvcaD-TFRagAfD 146 (483)
T KOG0780|consen 128 KGYKVALVCAD-TFRAGAFD 146 (483)
T ss_pred cCCceeEEeec-ccccchHH
Confidence 56788888888 66666554
No 264
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=88.09 E-value=0.53 Score=47.68 Aligned_cols=161 Identities=19% Similarity=0.140 Sum_probs=92.7
Q ss_pred EECCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCcccc------------ccCchhh--
Q 048389 122 PVHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAE------------VFPDKEN-- 187 (566)
Q Consensus 122 ~I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~lPlV~l~dsgGarl~~~~~------------~~~~~~~-- 187 (566)
+.||--.++.--++.-+. ++....-.-+.|+.+.|...+-=.+.+.-+.|-....+.+ ...+...
T Consensus 13 ~~~g~~~I~~~~~Pkk~N-al~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~~~~~~~~ 91 (266)
T KOG0016|consen 13 RENGPFFIALNIRPKKKN-ALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDANEESDKASK 91 (266)
T ss_pred ecCCcEEEEecCCCcccc-cccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcccccchhhHH
Confidence 455544444443776655 5555666677788888877765455555544421110000 0000000
Q ss_pred HHHHHH-HHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeE---------------EeccHHHH-----H-
Q 048389 188 FGRIFY-NQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTI---------------FLAGPPLV-----K- 245 (566)
Q Consensus 188 ~~~i~~-~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i---------------~~~GP~vv-----~- 245 (566)
+-..+. -.-.+..-.-|.|++|-||++|.|+.+.++||+|+.. ++++. .++.|..+ .
T Consensus 92 ~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~-Dka~F~TPfa~lGq~PEG~Ss~t~p~imG~~~A~E 170 (266)
T KOG0016|consen 92 FVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWAS-DKAWFQTPFAKLGQSPEGCSSVTLPKIMGSASANE 170 (266)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEec-cceEEeccchhcCCCCCcceeeeehHhhchhhHHH
Confidence 001100 0111233357999999999999999999999997754 44433 12334322 1
Q ss_pred h-hhcccccccCCCcccccccccCcceEEEcch---hHHHHHHHHHHHhcc
Q 048389 246 A-ATGEEISAEDLGGAAVHCKTSGVSDYFAQDE---LHGLSLGRNIIKNLH 292 (566)
Q Consensus 246 ~-~~ge~v~~e~lGga~~h~~~sG~~d~v~~de---~~a~~~~r~~ls~Lp 292 (566)
. ..||++++.|+ + .+|+++.+..++ ++++..++++.+ ||
T Consensus 171 ~ll~~~kltA~Ea-----~--~~glVskif~~~tf~~~v~~~ikq~s~-l~ 213 (266)
T KOG0016|consen 171 MLLFGEKLTAQEA-----C--EKGLVSKIFPAETFNEEVLKKIKQYSK-LS 213 (266)
T ss_pred HHHhCCcccHHHH-----H--hcCchhhhcChHHHHHHHHHHHHHHhc-CC
Confidence 1 34677776653 4 489999888764 678888888888 54
No 265
>PRK10949 protease 4; Provisional
Probab=86.06 E-value=3.1 Score=47.85 Aligned_cols=84 Identities=19% Similarity=0.109 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHHHHhC-CC-cEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEeccccccccccc
Q 048389 144 PITIKKHLRAQEIAAQC-KL-PCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAYIP 221 (566)
Q Consensus 144 ~~~~~K~~r~~~lA~~~-~l-PlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG~ay~~ 221 (566)
..+++.+.+.++.|.+. ++ -+|.-+||+|.-.- +.-.+...+.+++..+.|+++.+.+-|..||.|.+
T Consensus 346 ~~~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~----------ase~i~~~i~~~r~~gKPVvas~~~~aASggY~iA 415 (618)
T PRK10949 346 NVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVT----------ASEVIRAELAAARAAGKPVVVSMGGMAASGGYWIS 415 (618)
T ss_pred CcCHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHH----------HHHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHH
Confidence 34456677777777654 33 46777999995331 12234445555555578999988888888888888
Q ss_pred cCCCeeEEEecceeEEe
Q 048389 222 AMADESVMVKGNGTIFL 238 (566)
Q Consensus 222 a~~d~vi~v~~~a~i~~ 238 (566)
+.||.++ +.|++.++.
T Consensus 416 ~aad~I~-a~p~t~tGS 431 (618)
T PRK10949 416 TPANYIV-ASPSTLTGS 431 (618)
T ss_pred HhcCEEE-ECCCCceee
Confidence 8899865 677654443
No 266
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=84.20 E-value=2.2 Score=40.91 Aligned_cols=90 Identities=14% Similarity=0.164 Sum_probs=60.2
Q ss_pred ccccCChHHHHHHHHHHHHH--HhCCCcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEeccccc
Q 048389 138 KGGTYFPITIKKHLRAQEIA--AQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTA 215 (566)
Q Consensus 138 ~gGs~g~~~~~K~~r~~~lA--~~~~lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~G 215 (566)
..|.+.+..+..+..-+... ....-|+..+.+|+|..+.. .-.++.. +.....|+.+++.|.|.+
T Consensus 21 l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~~----------g~~i~~~---i~~~~~~v~t~~~G~aaS 87 (182)
T PF00574_consen 21 LNGPIDEESANRLISQLLYLENEDKNKPINIYINSPGGDVDA----------GLAIYDA---IRSSKAPVTTVVLGLAAS 87 (182)
T ss_dssp EESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCHHH----------HHHHHHH---HHHSSSEEEEEEEEEEET
T ss_pred ECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCCccHH----------HHHHHHH---HHhcCCCeEEEEeCcccc
Confidence 46888888888877654433 34567898899999964411 1123332 222368999999999999
Q ss_pred cccccccCCCee--EEEecceeEEeccH
Q 048389 216 GGAYIPAMADES--VMVKGNGTIFLAGP 241 (566)
Q Consensus 216 G~ay~~a~~d~v--i~v~~~a~i~~~GP 241 (566)
.+++.+..++.. +| .|++.+.+--|
T Consensus 88 aa~~i~~ag~~~~R~~-~~~s~~m~H~p 114 (182)
T PF00574_consen 88 AATLIFLAGDKGKRYA-SPNSRFMIHQP 114 (182)
T ss_dssp HHHHHHHTSSTTTEEE--TT-EEEES-C
T ss_pred ceehhhhcCCcCceee-eecCEEEeecc
Confidence 888888778874 54 56788777765
No 267
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=82.61 E-value=5.8 Score=38.67 Aligned_cols=90 Identities=11% Similarity=0.080 Sum_probs=56.4
Q ss_pred cccCChHHHHHHHHHHHHHHh--CCCcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEecccccc
Q 048389 139 GGTYFPITIKKHLRAQEIAAQ--CKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAG 216 (566)
Q Consensus 139 gGs~g~~~~~K~~r~~~lA~~--~~lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG 216 (566)
+|.+....+..+..-+..... ..-|++...+|+|..+.. .-.++..+ .....|+.+++.|-|.+.
T Consensus 32 ~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~----------g~~I~d~l---~~~~~~v~t~~~G~AaSa 98 (191)
T TIGR00493 32 SGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITA----------GLAIYDTM---QFIKPDVSTICIGQAASM 98 (191)
T ss_pred ccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCCCCHHH----------HHHHHHHH---HhcCCCEEEEEEEeeccH
Confidence 455555566666554444332 247899999999975521 11233332 222468888999999988
Q ss_pred ccccccCCC--eeEEEecceeEEeccHH
Q 048389 217 GAYIPAMAD--ESVMVKGNGTIFLAGPP 242 (566)
Q Consensus 217 ~ay~~a~~d--~vi~v~~~a~i~~~GP~ 242 (566)
++.+...++ ..+| -|++.+.+.-|.
T Consensus 99 aslI~~aG~~~~r~~-~p~s~imiH~p~ 125 (191)
T TIGR00493 99 GAFLLSAGAKGKRFS-LPNSRIMIHQPL 125 (191)
T ss_pred HHHHHhcCCCCcEEe-cCCceEEEecCc
Confidence 887765554 3565 468988888764
No 268
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=82.50 E-value=5.3 Score=39.24 Aligned_cols=88 Identities=17% Similarity=0.090 Sum_probs=58.8
Q ss_pred ccCChHHHHHHHHHHHHHHh-C-CCcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEeccccccc
Q 048389 140 GTYFPITIKKHLRAQEIAAQ-C-KLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGG 217 (566)
Q Consensus 140 Gs~g~~~~~K~~r~~~lA~~-~-~lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG~ 217 (566)
|.+++..+.-+.+.+..+.. . .-|++...+|+|..+.. + -.++..+ .....|+++++.|-|++.|
T Consensus 30 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~a------g----~aI~d~i---~~~~~~V~t~v~G~AaSaa 96 (197)
T PRK14512 30 GEINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDA------G----FAIFNMI---RFVKPKVFTIGVGLVASAA 96 (197)
T ss_pred CEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHH------H----HHHHHHH---HhCCCCEEEEEEeeeHhHH
Confidence 45556667777776665554 3 47999999999975411 1 1233332 2235799999999999999
Q ss_pred cccccCCCe--eEEEecceeEEeccH
Q 048389 218 AYIPAMADE--SVMVKGNGTIFLAGP 241 (566)
Q Consensus 218 ay~~a~~d~--vi~v~~~a~i~~~GP 241 (566)
+++...+|. .++ -|++++.+.-|
T Consensus 97 slIl~ag~~~~R~~-~p~s~imiHqP 121 (197)
T PRK14512 97 ALIFLAAKKESRFS-LPNARYLLHQP 121 (197)
T ss_pred HHHHhcCCcCceeE-CCCCcEEEEcC
Confidence 988777764 333 45777776655
No 269
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=78.04 E-value=4.4 Score=40.22 Aligned_cols=140 Identities=20% Similarity=0.279 Sum_probs=85.1
Q ss_pred EEecCccccccCChHHHHHHHHHHHHH-HhCCCcEEEEEc------CCCCCCCccccccCc-----hhhHHHHHHHHHHH
Q 048389 131 VANDPTVKGGTYFPITIKKHLRAQEIA-AQCKLPCIYLVD------SGGAYLPKQAEVFPD-----KENFGRIFYNQAIM 198 (566)
Q Consensus 131 ~a~D~tv~gGs~g~~~~~K~~r~~~lA-~~~~lPlV~l~d------sgGarl~~~~~~~~~-----~~~~~~i~~~~a~l 198 (566)
+..+--..--|+|..-.+.+..+.+-- ..++.-+|.|-. |+|+.+.+....-++ ....-.+|....+|
T Consensus 44 l~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~lR~~~~dIe~L 123 (291)
T KOG1679|consen 44 LNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNGLRGLFNDIERL 123 (291)
T ss_pred EecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 333333334588888888887777543 445555665533 456666432221111 11112345555555
Q ss_pred cCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEe-----------cc----HHHHHhhhccc--ccccCCCccc
Q 048389 199 SAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFL-----------AG----PPLVKAATGEE--ISAEDLGGAA 261 (566)
Q Consensus 199 s~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~-----------~G----P~vv~~~~ge~--v~~e~lGga~ 261 (566)
.+|+|+.|-|-+.|||--.+-.||.-+... ++.|++ +| |+.+-.+.-++ ++..-|-|++
T Consensus 124 ---p~P~IAAidG~ALGGGLElALACDiRva~s-~akmGLvET~laiiPGaGGtQRLpR~vg~alaKELIftarvl~g~e 199 (291)
T KOG1679|consen 124 ---PQPVIAAIDGAALGGGLELALACDIRVAAS-SAKMGLVETKLAIIPGAGGTQRLPRIVGVALAKELIFTARVLNGAE 199 (291)
T ss_pred ---Cccceehhcchhcccchhhhhhccceehhh-hccccccccceeeecCCCccchhHHHHhHHHHHhHhhhheeccchh
Confidence 589999999999999987766799877543 577765 12 44444444343 3667778888
Q ss_pred ccccccCcceEEEcc
Q 048389 262 VHCKTSGVSDYFAQD 276 (566)
Q Consensus 262 ~h~~~sG~~d~v~~d 276 (566)
-| .-|++.++++.
T Consensus 200 A~--~lGlVnhvv~q 212 (291)
T KOG1679|consen 200 AA--KLGLVNHVVEQ 212 (291)
T ss_pred HH--hcchHHHHHhc
Confidence 87 47999887743
No 270
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=74.59 E-value=7.9 Score=38.57 Aligned_cols=153 Identities=21% Similarity=0.334 Sum_probs=92.8
Q ss_pred EEecCccccccCChHHHHHHHHHHHHHHhC-CCcEEEEEc---------CCCC-CCCccccccCchhhHHH--HHHHHHH
Q 048389 131 VANDPTVKGGTYFPITIKKHLRAQEIAAQC-KLPCIYLVD---------SGGA-YLPKQAEVFPDKENFGR--IFYNQAI 197 (566)
Q Consensus 131 ~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~-~lPlV~l~d---------sgGa-rl~~~~~~~~~~~~~~~--i~~~~a~ 197 (566)
..|.+.+.. ++-+.+...+.++...|+.. ++-+|.|.- |||= ++-.....+.+-.+..+ ++.-+..
T Consensus 33 tinRPevrN-AfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~~rLnvLdlQrl 111 (282)
T COG0447 33 TINRPEVRN-AFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPRLNVLDLQRL 111 (282)
T ss_pred EecChhhhc-cCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCccCcccchhhHHHH
Confidence 345555544 67788888899998888755 688888872 1221 11000000100000111 1111112
Q ss_pred HcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEeccHHHHH-----------hhhccc-----------cccc
Q 048389 198 MSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVK-----------AATGEE-----------ISAE 255 (566)
Q Consensus 198 ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~GP~vv~-----------~~~ge~-----------v~~e 255 (566)
.+..-.|+|++|-|-+.|||--+-..||.+|.++ ++..+=+||.|=+ ...|++ .+++
T Consensus 112 IR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~-nA~FgQTgp~VGSFD~G~Gs~ylar~VGqKkArEIwfLcR~Y~A~ 190 (282)
T COG0447 112 IRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAAD-NAIFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAE 190 (282)
T ss_pred HHhCCcceEEEEeeEeccCccEEEEEeeeeeehh-cchhcCCCCCcccccCcccHHHHHHHhhhhhhHHhhhhhhhccHH
Confidence 2334569999999999999988878899988765 6999999998742 222322 1333
Q ss_pred CCCcccccccccCcceEEEcc---hhHHHHHHHHHHHhcc
Q 048389 256 DLGGAAVHCKTSGVSDYFAQD---ELHGLSLGRNIIKNLH 292 (566)
Q Consensus 256 ~lGga~~h~~~sG~~d~v~~d---e~~a~~~~r~~ls~Lp 292 (566)
+ .+ ..|++..|++- |+|.++.++++|+.-|
T Consensus 191 e-----al--~MGlVN~Vvp~~~LE~e~v~W~~E~l~kSP 223 (282)
T COG0447 191 E-----AL--DMGLVNTVVPHADLEKETVQWAREMLAKSP 223 (282)
T ss_pred H-----HH--hcCceeeeccHHHHHHHHHHHHHHHHhcCh
Confidence 2 22 47888888743 4678888888887544
No 271
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=72.34 E-value=14 Score=36.25 Aligned_cols=92 Identities=11% Similarity=0.092 Sum_probs=63.1
Q ss_pred cccccCChHHHHHHHHHHHHHH-hC-CCcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEecccc
Q 048389 137 VKGGTYFPITIKKHLRAQEIAA-QC-KLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCT 214 (566)
Q Consensus 137 v~gGs~g~~~~~K~~r~~~lA~-~~-~lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~ 214 (566)
|+||.+.+..+..+...+.+-. +. .-|+....+|+|..+.. + -.++..+. ....|+.+++.|-++
T Consensus 29 fl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~---------g-~aIyd~m~---~~~~~V~t~~~G~Aa 95 (196)
T PRK12551 29 FLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYD---------G-LGIFDTMQ---HVKPDVHTVCVGLAA 95 (196)
T ss_pred EECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhh---------H-HHHHHHHH---hcCCCEEEEEEEEeh
Confidence 5678888999988877665544 33 47999999999965521 1 12343332 235689999999999
Q ss_pred ccccccccCCCeeE-EEecceeEEeccH
Q 048389 215 AGGAYIPAMADESV-MVKGNGTIFLAGP 241 (566)
Q Consensus 215 GG~ay~~a~~d~vi-~v~~~a~i~~~GP 241 (566)
+.++.+...++..- .+-|++++.+--|
T Consensus 96 S~AslIl~aG~~~~R~~~p~a~iMIHqP 123 (196)
T PRK12551 96 SMGAFLLCAGAKGKRSSLQHSRIMIHQP 123 (196)
T ss_pred hHHHHHHhCCCCCceecCCCCEEEEecC
Confidence 88888776676422 2356788877766
No 272
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=72.15 E-value=36 Score=34.09 Aligned_cols=158 Identities=12% Similarity=0.121 Sum_probs=91.2
Q ss_pred CccCHHHHHHHHHHHHHH-hcCCCcEEEEEec-CC---CCCchHHHhcc----------hHH-HHHHHHHHHHcCCCCEE
Q 048389 377 GILFHESALKGAHFIELC-TQRKIPLVFLQNI-TG---FMVGSRSEANG----------IAK-AGAKMVMAVSCAKVPKV 440 (566)
Q Consensus 377 G~l~~~~a~K~ar~i~l~-~~~~iPlV~l~dt-~G---~~~g~~~E~~g----------~~~-~~a~~~~a~~~a~vP~i 440 (566)
.+..|..-..+.+....+ +..++-+|.|.-. .| |-.|-++--.| +-+ +.-.+-.-+.....|+|
T Consensus 41 NAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~~rLnvLdlQrlIR~~PKpVi 120 (282)
T COG0447 41 NAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPRLNVLDLQRLIRTMPKPVI 120 (282)
T ss_pred ccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCccCcccchhhHHHHHHhCCcceE
Confidence 566677666676655544 4688999999831 11 11111111111 111 11122233445678999
Q ss_pred EEEcCCCCchhhhhhccCCCCCCEEEEecCceeeccCHHHHHH-------HHhhh-hhhhhhhcCCCCchHHHHHHHHHH
Q 048389 441 TIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGAQAAG-------VLSQV-EKDKKKKQGIEWTKQEEEMFKAKV 512 (566)
Q Consensus 441 svi~g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~vmg~e~aa~-------i~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 512 (566)
++|-|-+.|||..- ++..|+.+|-.+|.++=.||.+.+- -+.++ -.+ ..+ ++ --|
T Consensus 121 A~V~G~AiGGGhvl----hvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VGqK-----------kAr-EI-wfL 183 (282)
T COG0447 121 AMVAGYAIGGGHVL----HVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVGQK-----------KAR-EI-WFL 183 (282)
T ss_pred EEEeeEeccCccEE----EEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhhhh-----------hhH-Hh-hhh
Confidence 99999999998742 2345889999999999888876542 11111 000 000 01 112
Q ss_pred HHHHHhhCCHHHHHhCcccceecCchhhHHHHHHHH-HHhhCCC
Q 048389 513 VEAYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCI-SAALNRP 555 (566)
Q Consensus 513 ~~~~~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L-~~~~~~~ 555 (566)
.++-++..+.++|+|..|++-.++-+.-..|- +++...|
T Consensus 184 ----cR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kSP 223 (282)
T COG0447 184 ----CRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAKSP 223 (282)
T ss_pred ----hhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHHHhcCh
Confidence 23347888999999999999988766555444 3443333
No 273
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=69.01 E-value=13 Score=37.23 Aligned_cols=91 Identities=8% Similarity=0.027 Sum_probs=61.7
Q ss_pred cccccCChHHHHHHHHHH-HHHHhC-CCcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEecccc
Q 048389 137 VKGGTYFPITIKKHLRAQ-EIAAQC-KLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCT 214 (566)
Q Consensus 137 v~gGs~g~~~~~K~~r~~-~lA~~~-~lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~ 214 (566)
|.||.+....+..+..-+ .+-.+. .-|+...++|+|..+.. ++ .++..+ .....|+.+++.|-|.
T Consensus 58 fl~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~a---------Gl-aIyd~m---~~~~~~V~tv~~G~AA 124 (221)
T PRK14514 58 FLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYA---------GL-GIYDTM---QFISSDVATICTGMAA 124 (221)
T ss_pred EECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhh---------HH-HHHHHH---HhcCCCEEEEEEEEeh
Confidence 467888888888887643 333222 57999999999975421 11 233332 2235799999999999
Q ss_pred ccccccccCCCe--eEEEecceeEEeccH
Q 048389 215 AGGAYIPAMADE--SVMVKGNGTIFLAGP 241 (566)
Q Consensus 215 GG~ay~~a~~d~--vi~v~~~a~i~~~GP 241 (566)
+.++.+.+.+|. .+| -|++++.+--|
T Consensus 125 S~AslIl~aG~~gkR~~-~pna~iMiHqP 152 (221)
T PRK14514 125 SMASVLLVAGTKGKRSA-LPHSRVMIHQP 152 (221)
T ss_pred hHHHHHHhcCCCCceee-CCCCEEEeccC
Confidence 988888777774 344 57888887665
No 274
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=65.76 E-value=3.9 Score=38.28 Aligned_cols=41 Identities=24% Similarity=0.375 Sum_probs=28.3
Q ss_pred CCcCEEEEEeccccccccccccCCCeeEEEecceeEEeccHH
Q 048389 201 EGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPP 242 (566)
Q Consensus 201 ~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~GP~ 242 (566)
.+.|+++.+-+.|..++.|+++.||.+++ .|.+.+++.|..
T Consensus 5 ~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~-~p~s~vgsiGv~ 45 (154)
T PF01343_consen 5 SGKPVVAYAEGYAASGAYYLASAADEIYA-NPSSSVGSIGVS 45 (154)
T ss_dssp TT--EEEEEEEEEETHHHHHHTTSSEEEE--TT-EEE---EE
T ss_pred cCCeEEEEECCcchhHHHHHHHcCCEEEe-cCCCEEEEeChh
Confidence 36899999999999777888889999775 788988888854
No 275
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=65.00 E-value=21 Score=35.12 Aligned_cols=91 Identities=11% Similarity=0.120 Sum_probs=62.2
Q ss_pred cccccCChHHHHHHH-HHHHHHHhC-CCcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEecccc
Q 048389 137 VKGGTYFPITIKKHL-RAQEIAAQC-KLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCT 214 (566)
Q Consensus 137 v~gGs~g~~~~~K~~-r~~~lA~~~-~lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~ 214 (566)
|.+|.+....+..+. +++.+..+. .-|+..+.+|+|..+.. ++ .++.. +.....|+.+++.|-|+
T Consensus 34 fl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~---------g~-aIyd~---m~~~~~~V~Tv~~G~Aa 100 (200)
T CHL00028 34 FLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVIS---------GL-AIYDT---MQFVKPDVHTICLGLAA 100 (200)
T ss_pred EECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchhh---------HH-HHHHH---HHhcCCCEEEEEEEehH
Confidence 457778888887775 455556554 58999999999965421 11 23333 33336799999999999
Q ss_pred ccccccccCCC--eeEEEecceeEEeccH
Q 048389 215 AGGAYIPAMAD--ESVMVKGNGTIFLAGP 241 (566)
Q Consensus 215 GG~ay~~a~~d--~vi~v~~~a~i~~~GP 241 (566)
+.++.+.+.++ ..+| -|++++.+--|
T Consensus 101 S~aslIl~aG~kg~R~~-~p~s~imiHqp 128 (200)
T CHL00028 101 SMASFILAGGEITKRLA-FPHARVMIHQP 128 (200)
T ss_pred HHHHHHHhCCCCCCEEe-cCCCeEEEecC
Confidence 98888877776 3455 46788877665
No 276
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=59.63 E-value=43 Score=33.04 Aligned_cols=92 Identities=11% Similarity=0.107 Sum_probs=61.8
Q ss_pred cccccCChHHHHHHHHHH-HHHHhC-CCcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEecccc
Q 048389 137 VKGGTYFPITIKKHLRAQ-EIAAQC-KLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCT 214 (566)
Q Consensus 137 v~gGs~g~~~~~K~~r~~-~lA~~~-~lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~ 214 (566)
|.||.+....+.-++.-+ .+-.+. .-|+..+++|+|..+.. + + .++..+. ...-|+.+++.|-|+
T Consensus 31 fl~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~------G---l-aIyd~m~---~~~~~V~Ti~~G~Aa 97 (201)
T PRK14513 31 FVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYA------G---L-AIYDTMR---YIKAPVSTICVGIAM 97 (201)
T ss_pred EECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhh------H---H-HHHHHHH---hcCCCEEEEEEeeeh
Confidence 457778888888885444 444333 47998889999965421 1 1 2333332 234699999999999
Q ss_pred ccccccccCCCe--eEEEecceeEEeccHH
Q 048389 215 AGGAYIPAMADE--SVMVKGNGTIFLAGPP 242 (566)
Q Consensus 215 GG~ay~~a~~d~--vi~v~~~a~i~~~GP~ 242 (566)
+.++.+.+.+|. .++ -|++++.+--|.
T Consensus 98 S~As~il~aG~kgkR~~-~pna~iMIHqp~ 126 (201)
T PRK14513 98 SMGSVLLMAGDKGKRMA-LPNSRIMIHQGS 126 (201)
T ss_pred hhHHHHHhcCCCCcEEe-cCCeEEEEecCC
Confidence 988888777774 344 578988887763
No 277
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=44.72 E-value=18 Score=35.66 Aligned_cols=145 Identities=21% Similarity=0.241 Sum_probs=79.0
Q ss_pred CCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhCCCcEEEEEc-----CCCCCCCccccccCchhhHHHHHHH----
Q 048389 124 HGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVD-----SGGAYLPKQAEVFPDKENFGRIFYN---- 194 (566)
Q Consensus 124 ~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~lPlV~l~d-----sgGarl~~~~~~~~~~~~~~~i~~~---- 194 (566)
||.+-.++.|+-++.-=|+... ..-...+...++.+.+-+|.+.. |+|-.+.+-... ++..--+.+|..
T Consensus 40 ~gvR~i~l~npKk~NtLSLaM~-~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e-~g~d~haevFqtc~dv 117 (287)
T KOG1682|consen 40 NGVREITLNNPKKLNTLSLAMM-CALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNE-PGSDIHAEVFQTCTDV 117 (287)
T ss_pred cceeeeeecCccccchhhHHHH-HHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcC-ccchHHHHHHHHHHHH
Confidence 5666666666655543232211 12222333444555677777765 345444322111 111111233322
Q ss_pred HHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeE---------EeccHHH--H---------H-hhhccccc
Q 048389 195 QAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTI---------FLAGPPL--V---------K-AATGEEIS 253 (566)
Q Consensus 195 ~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i---------~~~GP~v--v---------~-~~~ge~v~ 253 (566)
+.......||+|+-|-|.+++.|-.+.+.||.+|..+ ++.. |-.-|.+ . . -.||+.++
T Consensus 118 mn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k-~SkF~tPG~~vGlFCSTPGvAlaRavpRkva~~ML~Tg~Pi~ 196 (287)
T KOG1682|consen 118 MNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATK-NSKFSTPGAGVGLFCSTPGVALARAVPRKVAAYMLMTGLPIT 196 (287)
T ss_pred HHHHhcCCCceEEEecchhhhccceEEEeeeEEEEec-CccccCCCCceeeEecCcchhHhhhcchhHHHHHHHhCCCCc
Confidence 1123445899999999999988888888999887644 4433 3333432 1 1 13566666
Q ss_pred ccCCCcccccccccCcceEEEcchh
Q 048389 254 AEDLGGAAVHCKTSGVSDYFAQDEL 278 (566)
Q Consensus 254 ~e~lGga~~h~~~sG~~d~v~~de~ 278 (566)
.|+ -. .||++-.++++|+
T Consensus 197 ~ee-----Al--~sGlvskvVp~~e 214 (287)
T KOG1682|consen 197 GEE-----AL--ISGLVSKVVPAEE 214 (287)
T ss_pred hHH-----HH--HhhhhhhcCCHHH
Confidence 554 22 5899999997654
No 278
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=41.63 E-value=4.1e+02 Score=27.36 Aligned_cols=120 Identities=15% Similarity=0.179 Sum_probs=67.0
Q ss_pred EECCeEEEEEEeC----CccCHHHHHHHHHHHHHHhcCCC-cEEEEEecC-----CCCCch-------HHHhcc--hHHH
Q 048389 364 KIFGQPVGIIGNN----GILFHESALKGAHFIELCTQRKI-PLVFLQNIT-----GFMVGS-------RSEANG--IAKA 424 (566)
Q Consensus 364 rI~G~~Vgvvan~----G~l~~~~a~K~ar~i~l~~~~~i-PlV~l~dt~-----G~~~g~-------~~E~~g--~~~~ 424 (566)
|.||-...++-.+ -++..+...-+.++.+.++...- -++++.-.+ |...+. ..+... ..+.
T Consensus 13 ~~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~~~~~~~~~ 92 (266)
T KOG0016|consen 13 RENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDANEESDKASKF 92 (266)
T ss_pred ecCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcccccchhhHHH
Confidence 4566555544423 88999999999999998876554 444444322 111111 111111 1111
Q ss_pred ---HHHHHHHHHcCCCCEEEEEcCCCCchhhh--hhccCCCCCCE-EEEecCceeeccCHHHHHHH
Q 048389 425 ---GAKMVMAVSCAKVPKVTIIVGGSFGAGNY--AMCGRAYSPNF-MFLWPNARISVMGGAQAAGV 484 (566)
Q Consensus 425 ---~a~~~~a~~~a~vP~isvi~g~~~Ggg~~--am~~~~~~~d~-~~A~p~A~i~vmg~e~aa~i 484 (566)
+.-.+.++....-|.|++|-|++.|-|.- ++|+--+..|- -|..|=|.+|. .||+.+.+
T Consensus 93 v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq-~PEG~Ss~ 157 (266)
T KOG0016|consen 93 VKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQ-SPEGCSSV 157 (266)
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCC-CCCcceee
Confidence 12266889999999999999999998654 44432221221 12336566664 23444443
No 279
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=39.51 E-value=1.5e+02 Score=29.48 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=39.2
Q ss_pred HHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhhhhccCCCCCCEEE-------EecCceeec
Q 048389 416 SEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMF-------LWPNARISV 475 (566)
Q Consensus 416 ~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~am~~~~~~~d~~~-------A~p~A~i~v 475 (566)
+-+..+.+...++++-+.+..||+|.-|-|-+..+|-.-.. ..|+++ +.|++.+|+
T Consensus 105 d~haevFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVa----SCD~vVa~k~SkF~tPG~~vGl 167 (287)
T KOG1682|consen 105 DIHAEVFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVA----SCDMVVATKNSKFSTPGAGVGL 167 (287)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCceEEEecchhhhccceEEE----eeeEEEEecCccccCCCCceee
Confidence 44555788888999999999999999988865555543222 246654 457776665
No 280
>COG3222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.94 E-value=70 Score=31.18 Aligned_cols=68 Identities=19% Similarity=0.345 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEE-EecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhhhhccCCC
Q 048389 382 ESALKGAHFIELCTQRKIPLVFL-QNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAY 460 (566)
Q Consensus 382 ~~a~K~ar~i~l~~~~~iPlV~l-~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~am~~~~~ 460 (566)
+-++.++|....+-..+-|+|.+ .|+||.. +| ..+.++.++- ++| +|+|+++-||||.|+-+.+
T Consensus 88 d~gdRlars~~~a~~~~~~VliIg~DcP~lt----~e------lLa~a~taL~--~~p---aVLGpa~dGGy~llgLrr~ 152 (211)
T COG3222 88 DLGDRLARSHVDAFDGSYPVLIIGMDCPGLT----AE------LLADAFTALL--QIP---AVLGPAFDGGYYLLGLRRF 152 (211)
T ss_pred CHHHHHHHHHHHHhcCCCcEEEEecCCCccC----HH------HHHHHHHHHh--cCc---ceecccccCcEEEEEeecc
Confidence 45778888776665555787777 8999972 22 3344444443 344 6899999999999987766
Q ss_pred CCCE
Q 048389 461 SPNF 464 (566)
Q Consensus 461 ~~d~ 464 (566)
+|..
T Consensus 153 ~pe~ 156 (211)
T COG3222 153 APEL 156 (211)
T ss_pred CHHH
Confidence 6543
No 281
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=33.33 E-value=42 Score=28.15 Aligned_cols=29 Identities=10% Similarity=0.163 Sum_probs=26.9
Q ss_pred ccccccCChHHHHHHHHHHHHHHhCCCcE
Q 048389 136 TVKGGTYFPITIKKHLRAQEIAAQCKLPC 164 (566)
Q Consensus 136 tv~gGs~g~~~~~K~~r~~~lA~~~~lPl 164 (566)
..+||++-...-+-+.++.++|.++++|+
T Consensus 40 keRgG~IP~~V~~sl~kL~~La~~N~v~f 68 (82)
T PF11020_consen 40 KERGGQIPEKVMDSLSKLYKLAKENNVSF 68 (82)
T ss_pred HhhCCCCCHHHHHHHHHHHHHHHHcCCCH
Confidence 56899999999999999999999999886
No 282
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=31.17 E-value=90 Score=33.20 Aligned_cols=42 Identities=21% Similarity=0.219 Sum_probs=32.9
Q ss_pred EEEEEECCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhCCCcEEEEEcCC
Q 048389 118 TGIGPVHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSG 171 (566)
Q Consensus 118 tG~G~I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~lPlV~l~dsg 171 (566)
.|+-...+.|=+|+..|... =..++.-|.+.+||+|.|+||-
T Consensus 144 ~Gi~~m~~~Pd~viv~d~~~------------e~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 144 GGIKDMGGLPDLLFVIDTNK------------EDIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred cchhhcccCCCEEEEeCCcc------------chHHHHHHHHcCCCEEEEeeCC
Confidence 35566777777888888653 2467888999999999999984
No 283
>PRK06186 hypothetical protein; Validated
Probab=30.45 E-value=45 Score=33.64 Aligned_cols=32 Identities=16% Similarity=0.016 Sum_probs=27.5
Q ss_pred ccccCChHHHHHHHHHHHHHHhCCCcEEEEEcC
Q 048389 138 KGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDS 170 (566)
Q Consensus 138 ~gGs~g~~~~~K~~r~~~lA~~~~lPlV~l~ds 170 (566)
-|| +|..+.+-...++++|+++++|++.+|=+
T Consensus 60 pgG-fg~rg~~Gki~ai~~Are~~iP~LGIClG 91 (229)
T PRK06186 60 VPG-SPYRNDDGALTAIRFARENGIPFLGTCGG 91 (229)
T ss_pred CCC-CCcccHhHHHHHHHHHHHcCCCeEeechh
Confidence 456 78888888899999999999999998743
No 284
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=29.90 E-value=83 Score=30.88 Aligned_cols=48 Identities=19% Similarity=0.333 Sum_probs=28.2
Q ss_pred CCCcEEEEEecCCCCCchHHH--hcchHHHHHHHHHHHHcCCCCEEEEEc
Q 048389 397 RKIPLVFLQNITGFMVGSRSE--ANGIAKAGAKMVMAVSCAKVPKVTIIV 444 (566)
Q Consensus 397 ~~iPlV~l~dt~G~~~g~~~E--~~g~~~~~a~~~~a~~~a~vP~isvi~ 444 (566)
.++|+++|.||.|-|.|..-| ..|+...+..+..-=.....-++++|+
T Consensus 2 rRlP~~lllDtSgSM~Ge~IealN~Glq~m~~~Lkqdp~Ale~v~lsIVT 51 (207)
T COG4245 2 RRLPCYLLLDTSGSMIGEPIEALNAGLQMMIDTLKQDPYALERVELSIVT 51 (207)
T ss_pred CCCCEEEEEecCcccccccHHHHHHHHHHHHHHHHhChhhhheeEEEEEE
Confidence 579999999999999887544 334433333333111112334666664
No 285
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=26.31 E-value=2.4e+02 Score=27.85 Aligned_cols=77 Identities=14% Similarity=0.214 Sum_probs=49.2
Q ss_pred HHHHHHHhC-CCcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEeccccccccccccCCCee--E
Q 048389 152 RAQEIAAQC-KLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADES--V 228 (566)
Q Consensus 152 r~~~lA~~~-~lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~v--i 228 (566)
++..+..+. .-|+...++|+|..+.. ++ .|+..+ ....-|+.++++|-+..-|+.++..++.- +
T Consensus 47 qll~Lea~~~~k~I~lyINSpGG~V~a---------G~-AIydtm---~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~ 113 (200)
T COG0740 47 QLLFLEAEDPDKDIYLYINSPGGSVTA---------GL-AIYDTM---QFIKPPVSTICMGQAASMGSVLLMAGDKGKRF 113 (200)
T ss_pred HHHHHHhcCCCCCeEEEEeCCCcccch---------hH-HHHHHH---HhcCCCeEEEEecHHHhHHHHHHhcCCCCCce
Confidence 444444444 67888889999965521 11 233332 22356899999999888888776666643 4
Q ss_pred EEecceeEEeccHH
Q 048389 229 MVKGNGTIFLAGPP 242 (566)
Q Consensus 229 ~v~~~a~i~~~GP~ 242 (566)
+ -|+++|.+--|.
T Consensus 114 ~-lPnsrimIHqP~ 126 (200)
T COG0740 114 A-LPNARIMIHQPS 126 (200)
T ss_pred e-CCCceEEEecCC
Confidence 3 468888776654
No 286
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.04 E-value=2.5e+02 Score=31.57 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=35.0
Q ss_pred CCEEEEEEEecCccccccCC--hHHHHHH-----------------------HHHHHHHHhCCCcEEEEEcCCCCCCCc
Q 048389 124 HGRLCMFVANDPTVKGGTYF--PITIKKH-----------------------LRAQEIAAQCKLPCIYLVDSGGAYLPK 177 (566)
Q Consensus 124 ~Gr~v~v~a~D~tv~gGs~g--~~~~~K~-----------------------~r~~~lA~~~~lPlV~l~dsgGarl~~ 177 (566)
|+..|.|+|.| ||+.|++- ..|.+.+ ..++++|...+--+| |+||+| ||+.
T Consensus 405 NkfrVLIAACD-TFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~vak~AI~~a~~~gfDVv-LiDTAG-R~~~ 480 (587)
T KOG0781|consen 405 NKFRVLIAACD-TFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVAKEAIQEARNQGFDVV-LIDTAG-RMHN 480 (587)
T ss_pred CCceEEEEecc-chhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHHHHHHHHHHHhcCCCEE-EEeccc-cccC
Confidence 56699999999 66666543 1233333 357788888887655 789999 8854
No 287
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=24.78 E-value=3.5e+02 Score=27.15 Aligned_cols=92 Identities=13% Similarity=0.080 Sum_probs=54.4
Q ss_pred HHHHH-HHHHHHHHhC-CCcEEEEEcCCCCCCCccccccCchhhHHHHHHHHHHHcCCCcCEEEEEeccccccccccccC
Q 048389 146 TIKKH-LRAQEIAAQC-KLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAYIPAM 223 (566)
Q Consensus 146 ~~~K~-~r~~~lA~~~-~lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG~ay~~a~ 223 (566)
.++.+ ..++-+..+. .-|+-.+++|+|..+-..+ .++.....-.++..+.. ..-|+.++++|-+++.++.+.+.
T Consensus 53 ~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~-~iG~v~~glaIyD~m~~---ik~~V~Tv~~G~AaS~AslIl~a 128 (222)
T PRK12552 53 VTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGD-AIGFETEAFAICDTMRY---IKPPVHTICIGQAMGTAAMILSA 128 (222)
T ss_pred HHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccc-cccccccHHHHHHHHHh---cCCCeEEEEEeehhhHHHHHHhC
Confidence 55554 3444554444 5799999999887542211 11011111123333322 24589999999999988888777
Q ss_pred CCeeE-EEecceeEEeccH
Q 048389 224 ADESV-MVKGNGTIFLAGP 241 (566)
Q Consensus 224 ~d~vi-~v~~~a~i~~~GP 241 (566)
++-.. .+-|++++.+--|
T Consensus 129 G~kg~R~alpns~iMIHqP 147 (222)
T PRK12552 129 GTKGQRASLPHATIVLHQP 147 (222)
T ss_pred CCCCceecCCCcEEEeccC
Confidence 77422 2357888877665
No 288
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=23.07 E-value=1.5e+02 Score=32.73 Aligned_cols=29 Identities=17% Similarity=0.341 Sum_probs=20.7
Q ss_pred HHHhcCCCcEEEEEecCCCCCchHHHhcc
Q 048389 392 ELCTQRKIPLVFLQNITGFMVGSRSEANG 420 (566)
Q Consensus 392 ~l~~~~~iPlV~l~dt~G~~~g~~~E~~g 420 (566)
+++..+++|||.++|..|.+-+..+.-.|
T Consensus 105 ~lAk~l~~PVvLVid~~~~s~S~AAiv~G 133 (451)
T COG1797 105 DLAKLLGAPVVLVVDASGLSRSVAAIVKG 133 (451)
T ss_pred HHHHHhCCCEEEEEeCcchhHHHHHHHHH
Confidence 45557899999999998875555444444
No 289
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=23.02 E-value=1.5e+02 Score=31.55 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=30.6
Q ss_pred EEECCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhCCCcEEEEEcCC
Q 048389 121 GPVHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSG 171 (566)
Q Consensus 121 G~I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~lPlV~l~dsg 171 (566)
=|||||||++|=.= +.+ +...+-+...-+.|.+.|+|=|+|+..-
T Consensus 154 ikVdGKPv~~Iy~p-----~~~-pd~~~~~~~wr~~a~~~G~~giyii~~~ 198 (345)
T PF14307_consen 154 IKVDGKPVFLIYRP-----GDI-PDIKEMIERWREEAKEAGLPGIYIIAVQ 198 (345)
T ss_pred eeECCEEEEEEECc-----ccc-cCHHHHHHHHHHHHHHcCCCceEEEEEe
Confidence 47899998777554 222 4455556666688899998877766543
No 290
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=22.45 E-value=1.5e+02 Score=31.71 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=39.2
Q ss_pred CCEEEEEEEecCccccc-------------------cCChHHHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccc
Q 048389 124 HGRLCMFVANDPTVKGG-------------------TYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQA 179 (566)
Q Consensus 124 ~Gr~v~v~a~D~tv~gG-------------------s~g~~~~~K~~r~~~lA~~~~lPlV~l~dsgGarl~~~~ 179 (566)
+|..|++.|-| ||++| .-|..-+.=+..+++.|...++=+| |+||+| ||+...
T Consensus 166 ~g~~VllaA~D-TFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~Dvv-liDTAG-RLhnk~ 237 (340)
T COG0552 166 QGKSVLLAAGD-TFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAKARGIDVV-LIDTAG-RLHNKK 237 (340)
T ss_pred CCCeEEEEecc-hHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHHHcCCCEE-EEeCcc-cccCch
Confidence 78899999999 45443 3455556667788888888887765 689999 996543
No 291
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=21.12 E-value=46 Score=33.63 Aligned_cols=87 Identities=17% Similarity=0.200 Sum_probs=58.0
Q ss_pred CcCEEEEEeccccccccccccCCCeeEEEecceeEEeccHH-----------HHHhhhc-----cc--ccccCCCccccc
Q 048389 202 GIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPP-----------LVKAATG-----EE--ISAEDLGGAAVH 263 (566)
Q Consensus 202 ~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~GP~-----------vv~~~~g-----e~--v~~e~lGga~~h 263 (566)
.-|+|+.|.|.|.|+|.=+...||+-+..+ .+.+.+---. =+..+.| .+ +++-.+++.+-|
T Consensus 126 pKPVIaavHg~CiGagvDLiTAcDIRycsq-DAffsvkEVDvglaADvGTL~RlpkvVGn~s~~~elafTar~f~a~EAl 204 (292)
T KOG1681|consen 126 PKPVIAAVHGACIGAGVDLITACDIRYCSQ-DAFFSVKEVDVGLAADVGTLNRLPKVVGNQSLARELAFTARKFSADEAL 204 (292)
T ss_pred ChhHHHHHHhhhccccccceeecceeeecc-cceeeeeeeeeehhhchhhHhhhhHHhcchHHHHHHHhhhhhcchhhhh
Confidence 569999999999999988877888766543 4533321100 1122223 12 356677787888
Q ss_pred ccccCcceEEEcchhHHHHHHHHHHHhc
Q 048389 264 CKTSGVSDYFAQDELHGLSLGRNIIKNL 291 (566)
Q Consensus 264 ~~~sG~~d~v~~de~~a~~~~r~~ls~L 291 (566)
.+|++-.|.+|.++.+..+..+-...
T Consensus 205 --~~GLvSrvf~dk~~ll~~~l~mA~~I 230 (292)
T KOG1681|consen 205 --DSGLVSRVFPDKEELLNGALPMAELI 230 (292)
T ss_pred --hcCcchhhcCCHHHHHhhhHHHHHHh
Confidence 49999999999888877765554433
No 292
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=20.70 E-value=38 Score=34.61 Aligned_cols=89 Identities=15% Similarity=0.081 Sum_probs=62.5
Q ss_pred CHHHHHHhccCCCCCceeccccccccccccccCCCcEEEEEEEECCEEEEEEEecCccccccCChHHHHHHHHHHHHHHh
Q 048389 80 LPRERIDRLTDPGSSFLELSQLAGHELYEETLQSGGIITGIGPVHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQ 159 (566)
Q Consensus 80 ~areri~~L~D~gS~F~El~~l~~~~~~~~~~~~~gvvtG~G~I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~ 159 (566)
++|+..+.|...+. +.-+..+++++.-.-...+.-+++|++-.+|..-.+--+++...=-+..+..++=-.-+++.|.+
T Consensus 13 Dar~la~~L~~~~~-~~~~ss~t~~g~~l~~~~~~~~~~G~l~~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake 91 (257)
T COG2099 13 DARALAKKLAAAPV-DIILSSLTGYGAKLAEQIGPVRVGGFLGAEGLAAFLREEGIDLLIDATHPYAARISQNAARAAKE 91 (257)
T ss_pred HHHHHHHHhhccCc-cEEEEEcccccccchhccCCeeecCcCCHHHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHH
Confidence 45666677766665 44455554443211122344788999988888777766666666667778888888899999999
Q ss_pred CCCcEEEEEc
Q 048389 160 CKLPCIYLVD 169 (566)
Q Consensus 160 ~~lPlV~l~d 169 (566)
.++|++.|--
T Consensus 92 ~gipy~r~eR 101 (257)
T COG2099 92 TGIPYLRLER 101 (257)
T ss_pred hCCcEEEEEC
Confidence 9999999864
No 293
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=20.40 E-value=1.2e+02 Score=32.15 Aligned_cols=46 Identities=24% Similarity=0.315 Sum_probs=34.7
Q ss_pred CEEEEEEEecCccccccCChHHHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCc
Q 048389 125 GRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPK 177 (566)
Q Consensus 125 Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~lPlV~l~dsgGarl~~ 177 (566)
|..|.+...+.. ...-+++....+.+.+.+.-.|+++||.|...|.
T Consensus 127 G~~v~~~l~~s~-------~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~ 172 (333)
T TIGR03217 127 GMDTVGFLMMSH-------MTPPEKLAEQAKLMESYGADCVYIVDSAGAMLPD 172 (333)
T ss_pred CCeEEEEEEccc-------CCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCHH
Confidence 445555555532 3456788999999999999999999999987654
Done!