BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048390
         (159 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
           Allergen
 pdb|1N10|B Chain B, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
           Allergen
          Length = 241

 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/136 (47%), Positives = 83/136 (61%), Gaps = 9/136 (6%)

Query: 29  PKHLNLSAV-GTHWSTAGATWYGSPDGAG--NDGGSCGYGNEVSQSPFASFVTAIGPSLY 85
           P   N++A  G  W  A +TWYG P GAG  ++GG+CGY  +V + PF+         ++
Sbjct: 6   PPGPNITATYGDKWLDAKSTWYGKPTGAGPKDNGGACGY-KDVDKPPFSGMTGCGNTPIF 64

Query: 86  KSGKECGGCYQ--CTKHPACSGKAVRVVITDFCGGGPFAPESAHFDLSGTAFGAMAIPSQ 143
           KSG+ CG C++  CTK  ACSG+ V V ITD     P AP   HFDLSG AFGAMA    
Sbjct: 65  KSGRGCGSCFEIKCTKPEACSGEPVVVHITDD-NEEPIAP--YHFDLSGHAFGAMAKKGD 121

Query: 144 EAKLRNAGVLEVQYAR 159
           E KLR+AG LE+Q+ R
Sbjct: 122 EQKLRSAGELELQFRR 137


>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And
           Group-1 Pollen Allergen From Maize
          Length = 245

 Score = 99.4 bits (246), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 55/124 (44%), Positives = 75/124 (60%), Gaps = 8/124 (6%)

Query: 40  HWSTAGATWYGSPDGAG--NDGGSCGYGNEVSQSPFASFVTAIGPSLYKSGKECGGCYQ- 96
            W TA ATWYG P+GAG  ++GG+CG  N V+  P++         ++K GK CG CY+ 
Sbjct: 18  KWLTARATWYGQPNGAGAPDNGGACGIKN-VNLPPYSGMTACGNVPIFKDGKGCGSCYEV 76

Query: 97  -CTKHPACSGKAVRVVITDFCGGGPFAPESAHFDLSGTAFGAMAIPSQEAKLRNAGVLEV 155
            C + P CSG  V V ITD     P AP   HFDLSG AFG++A P    K+R+ G+++V
Sbjct: 77  RCKEKPECSGNPVTVYITDM-NYEPIAP--YHFDLSGKAFGSLAKPGLNDKIRHCGIMDV 133

Query: 156 QYAR 159
           ++ R
Sbjct: 134 EFRR 137


>pdb|2CGJ|A Chain A, Crystal Structure Of L-Rhamnulose Kinase From Escherichia
           Coli In Complex With L-Fructose And Adp.
 pdb|2CGK|A Chain A, Crystal Structure Of L-Rhamnulose Kinase From Escherichia
           Coli In An Open Uncomplexed Conformation.
 pdb|2CGK|B Chain B, Crystal Structure Of L-Rhamnulose Kinase From Escherichia
           Coli In An Open Uncomplexed Conformation.
 pdb|2UYT|A Chain A, Structure Of L-Rhamnulose Kinase In Complex With Adp And
           Beta-L-Rhamnulose
          Length = 489

 Score = 31.2 bits (69), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 41  WSTAGATWYGSPDGAGNDGGS--CGYGNEVSQSPFASFVTA 79
           WS A   W+G P   GN  G   C  GNE+     AS  TA
Sbjct: 199 WSGANKAWFGRPTHPGNVIGHWICPQGNEIPVVAVASHDTA 239


>pdb|2CGL|A Chain A, Crystal Structure Of L-Rhamnulose Kinase From Escherichia
           Coli In Complex With L-Fructose, Adp And A Modeled Atp
           Gamma Phosphate
          Length = 489

 Score = 30.8 bits (68), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 41  WSTAGATWYGSPDGAGNDGGS--CGYGNEVSQSPFASFVTA 79
           WS A   W+G P   GN  G   C  GNE+     AS  TA
Sbjct: 199 WSGANKAWFGRPTHPGNVIGHWICPQGNEIPVVAVASHDTA 239


>pdb|3SUL|A Chain A, Crystal Structure Of Cerato-Platanin 3 From M. Perniciosa
           (Mpcp3)
          Length = 122

 Score = 28.1 bits (61), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 75  SFVTAIGPSLYKSGKECGGCYQCTKHPACSGKAVRVVITDFCGGGPFAPESAHFDLS 131
           S+V A+      + + CG CYQ T     +GK + VV  D  G G    + A  DL+
Sbjct: 44  SYVGAVDTITGWNSESCGTCYQITWSG--TGKTIHVVGVDVAGNGFNVGQRAMDDLT 98


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.134    0.433 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,781,314
Number of Sequences: 62578
Number of extensions: 200668
Number of successful extensions: 383
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 373
Number of HSP's gapped (non-prelim): 12
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)