Query 048390
Match_columns 159
No_of_seqs 111 out of 812
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 09:04:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048390.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048390hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03023 Expansin-like B1; Pro 100.0 1.1E-37 2.3E-42 258.8 12.7 134 9-159 3-138 (247)
2 PLN00193 expansin-A; Provision 100.0 2.5E-36 5.3E-41 251.7 13.8 134 10-159 7-155 (256)
3 PLN00050 expansin A; Provision 100.0 2.3E-35 5.1E-40 244.8 11.1 115 37-159 21-147 (247)
4 PLN03024 Putative EG45-like do 100.0 1.3E-29 2.8E-34 191.7 12.0 97 42-159 22-125 (125)
5 smart00837 DPBB_1 Rare lipopro 99.9 8.3E-25 1.8E-29 156.1 6.7 74 77-157 1-87 (87)
6 PF03330 DPBB_1: Rare lipoprot 99.8 2.5E-20 5.5E-25 129.1 6.1 70 77-157 1-78 (78)
7 COG4305 Endoglucanase C-termin 99.1 7.1E-10 1.5E-14 88.7 10.1 97 39-158 28-128 (232)
8 PF00967 Barwin: Barwin family 98.7 9.4E-09 2E-13 76.7 3.0 60 87-158 56-115 (119)
9 TIGR00413 rlpA rare lipoprotei 98.6 4E-07 8.7E-12 74.3 9.7 89 44-158 1-89 (208)
10 COG0797 RlpA Lipoproteins [Cel 98.5 8.6E-07 1.9E-11 73.5 8.8 66 74-158 108-173 (233)
11 PRK10672 rare lipoprotein A; P 98.2 1.4E-05 3E-10 70.1 10.5 89 43-157 80-168 (361)
12 PF07249 Cerato-platanin: Cera 98.1 1.3E-05 2.9E-10 60.4 7.5 68 75-159 43-111 (119)
13 PF02015 Glyco_hydro_45: Glyco 83.2 0.84 1.8E-05 37.4 2.1 41 89-133 82-123 (201)
14 PF11770 GAPT: GRB2-binding ad 21.1 69 0.0015 25.3 1.8 23 5-27 8-30 (158)
No 1
>PLN03023 Expansin-like B1; Provisional
Probab=100.00 E-value=1.1e-37 Score=258.77 Aligned_cols=134 Identities=35% Similarity=0.640 Sum_probs=117.7
Q ss_pred chHHHHHHHHHHHhhccccCCCCCCccccCCCeeEEEEEEeCCCCCCCCCcCCCCCCCCCCCCCCCCeEEEeCccccCCC
Q 048390 9 LSLSFFLDLLCYLELCSCFYPKHLNLSAVGTHWSTAGATWYGSPDGAGNDGGSCGYGNEVSQSPFASFVTAIGPSLYKSG 88 (159)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~g~aT~Y~~~~~~g~~~GACGyg~~~~~~~~~~~iaAls~~l~~~G 88 (159)
||..+||++++++++..+ ..++|.+++||||+++++.|+++|||||++ +..+.++.++||++ .||++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~----------~~~~W~~a~AT~Yg~~~g~gt~gGACGYg~-~~~~~~g~~~aa~s-~Lf~~G 70 (247)
T PLN03023 3 LSHYCCFLCVIVLLPLLC----------KSQDFTYSRATYYGSPDCLGTPTGACGFGE-YGRTVNGGNVAGVS-RLYRNG 70 (247)
T ss_pred chhhHHHHHHHHHhhhhh----------hcCCcccceEEEeCCCCCCCCCCccccCCc-cccCCCcceeeeeh-hhhcCC
Confidence 455566666665555532 233599999999999999999999999999 77788899999998 999999
Q ss_pred CCCCccEE--ecCCCCCCCCcEEEEEeccCCCCCCCCCCCceecCHHHHHHhccCchhhhcccCceeEEEEEC
Q 048390 89 KECGGCYQ--CTKHPACSGKAVRVVITDFCGGGPFAPESAHFDLSGTAFGAMAIPSQEAKLRNAGVLEVQYAR 159 (159)
Q Consensus 89 ~~CG~C~e--c~~~~~C~g~sV~V~VtD~Cp~~~C~~~~~~~DLS~~AF~kia~~~~~~~l~~~G~i~I~~rr 159 (159)
.+||+||| |+++..|.+++|+|+|||.||+ + +.|||||.+||.+||+|+++++|++.|+|+|+|||
T Consensus 71 ~~CGaCy~irC~~~~~C~~~~v~V~iTd~~~~--~---~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrR 138 (247)
T PLN03023 71 TGCGACYQVRCKAPNLCSDDGVNVVVTDYGEG--D---KTDFILSPRAYARLARPNMAAELFAYGVVDVEYRR 138 (247)
T ss_pred chhcccEEeecCCCCccCCCCeEEEEEeCCCC--C---CCccccCHHHHHHHhCccccchhccCcEEEeEEEE
Confidence 99999999 8888889999999999999985 3 58999999999999999999999999999999998
No 2
>PLN00193 expansin-A; Provisional
Probab=100.00 E-value=2.5e-36 Score=251.71 Aligned_cols=134 Identities=33% Similarity=0.769 Sum_probs=111.9
Q ss_pred hHHHHHHHHHHHhhccccCCCCCCccccCCCeeEEEEEEeCCCCCCCCCcCCCCCCCCCCCCCCCCeEEEeCccccCCCC
Q 048390 10 SLSFFLDLLCYLELCSCFYPKHLNLSAVGTHWSTAGATWYGSPDGAGNDGGSCGYGNEVSQSPFASFVTAIGPSLYKSGK 89 (159)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~g~aT~Y~~~~~~g~~~GACGyg~~~~~~~~~~~iaAls~~l~~~G~ 89 (159)
-+-+||.++|.+.-.-... ...+|.+++||||+.+|+.++++|||||++ +..++++.++||+|+.||++|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~--------~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~-l~~~~~g~~~AAls~~lf~~G~ 77 (256)
T PLN00193 7 GLAILLQFCCYLFINVNAF--------TPSGWTKAHATFYGGSDASGTMGGACGYGN-LYSTGYGTRTAALSTALFNDGA 77 (256)
T ss_pred HHHHHHHHHHHHHhhccCc--------CCCCceeeEEEEcCCCCCCCCCCcccCCCC-ccccCCCceeeecCHhHccCCc
Confidence 4555666665544221111 234799999999999999999999999999 6678899999999999999999
Q ss_pred CCCccEE--ec---CCCCCC-CCcEEEEEeccCCC---------CCCCCCCCceecCHHHHHHhccCchhhhcccCceeE
Q 048390 90 ECGGCYQ--CT---KHPACS-GKAVRVVITDFCGG---------GPFAPESAHFDLSGTAFGAMAIPSQEAKLRNAGVLE 154 (159)
Q Consensus 90 ~CG~C~e--c~---~~~~C~-g~sV~V~VtD~Cp~---------~~C~~~~~~~DLS~~AF~kia~~~~~~~l~~~G~i~ 154 (159)
.||+||| |. +++.|. +++|+|+|||+||+ +||++++.|||||++||.+||. ++.|+|+
T Consensus 78 ~CGaCyev~C~~~~~~~~C~~g~sV~Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~-------~~~Giv~ 150 (256)
T PLN00193 78 SCGQCYRIMCDYQADSRWCIKGASVTITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGI-------YRGGIVP 150 (256)
T ss_pred cccCeEEEECCCCCCCccccCCCeEEEEEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhh-------hcCCeEe
Confidence 9999999 63 455685 56999999999995 3899889999999999999998 7999999
Q ss_pred EEEEC
Q 048390 155 VQYAR 159 (159)
Q Consensus 155 I~~rr 159 (159)
|+|||
T Consensus 151 V~yrR 155 (256)
T PLN00193 151 VLFQR 155 (256)
T ss_pred EEEEE
Confidence 99998
No 3
>PLN00050 expansin A; Provisional
Probab=100.00 E-value=2.3e-35 Score=244.83 Aligned_cols=115 Identities=37% Similarity=0.792 Sum_probs=105.2
Q ss_pred cCCCeeEEEEEEeCCCCCCCCCcCCCCCCCCCCCCCCCCeEEEeCccccCCCCCCCccEE--ecCC-CCCCCCcEEEEEe
Q 048390 37 VGTHWSTAGATWYGSPDGAGNDGGSCGYGNEVSQSPFASFVTAIGPSLYKSGKECGGCYQ--CTKH-PACSGKAVRVVIT 113 (159)
Q Consensus 37 ~~~~w~~g~aT~Y~~~~~~g~~~GACGyg~~~~~~~~~~~iaAls~~l~~~G~~CG~C~e--c~~~-~~C~g~sV~V~Vt 113 (159)
+..+|.+++||||+.+++.++++|||||++ +..++++.++||+|+.||++|..||+||| |.+. ..|.+++|+|+||
T Consensus 21 ~~~~W~~a~AT~Yg~~dg~gt~gGACGYg~-l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~~~~C~~gsV~V~it 99 (247)
T PLN00050 21 YGSGWTGAHATFYGGGDASGTMGGACGYGN-LYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDNIWCLPGSIIITAT 99 (247)
T ss_pred cCCCccccEEEEcCCCCCCCCCCcccCCCC-ccccCCCceeeeccHhHccCCccccceEEEEcCCCCcccCCCcEEEEEe
Confidence 356899999999999999999999999999 66678999999999999999999999999 7543 3588889999999
Q ss_pred ccCCC---------CCCCCCCCceecCHHHHHHhccCchhhhcccCceeEEEEEC
Q 048390 114 DFCGG---------GPFAPESAHFDLSGTAFGAMAIPSQEAKLRNAGVLEVQYAR 159 (159)
Q Consensus 114 D~Cp~---------~~C~~~~~~~DLS~~AF~kia~~~~~~~l~~~G~i~I~~rr 159 (159)
|+||+ +||.+++.|||||++||.+||. ++.|+|+|+|||
T Consensus 100 d~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~-------~~aGii~V~yRR 147 (247)
T PLN00050 100 NFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQ-------YKAGIVPVQYRR 147 (247)
T ss_pred cCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhh-------hcCCeeeeEEEE
Confidence 99995 4899889999999999999998 899999999998
No 4
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.96 E-value=1.3e-29 Score=191.74 Aligned_cols=97 Identities=33% Similarity=0.640 Sum_probs=83.6
Q ss_pred eEEEEEEeCCCCCCCCCcCCCCCCCCCCCCCCCCeEEEeCccccCCCCCCCccEE--ecCC-----CCCCCCcEEEEEec
Q 048390 42 STAGATWYGSPDGAGNDGGSCGYGNEVSQSPFASFVTAIGPSLYKSGKECGGCYQ--CTKH-----PACSGKAVRVVITD 114 (159)
Q Consensus 42 ~~g~aT~Y~~~~~~g~~~GACGyg~~~~~~~~~~~iaAls~~l~~~G~~CG~C~e--c~~~-----~~C~g~sV~V~VtD 114 (159)
.+|+||||+++ ..|||+ ++ .+++.++||+|+.+|++|+.||+||| |.++ ..|++++|+|+|+|
T Consensus 22 ~~G~AT~Y~~~-----~~gAC~-~~----~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~~~c~gksV~V~VtD 91 (125)
T PLN03024 22 TPGIATFYTSY-----TPSACY-RG----TSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVPHPCTGKSVTVKIVD 91 (125)
T ss_pred cceEEEEeCCC-----CCcccc-CC----CCCCCEeEEeCHHHcCCCcccCceEEEEECCCCccccccccCCeEEEEEEc
Confidence 56999999874 368994 44 26789999999999999999999999 6664 35899999999999
Q ss_pred cCCCCCCCCCCCceecCHHHHHHhccCchhhhcccCceeEEEEEC
Q 048390 115 FCGGGPFAPESAHFDLSGTAFGAMAIPSQEAKLRNAGVLEVQYAR 159 (159)
Q Consensus 115 ~Cp~~~C~~~~~~~DLS~~AF~kia~~~~~~~l~~~G~i~I~~rr 159 (159)
+||++ |. +|||||++||++||+ .+.|+|+|+|.+
T Consensus 92 ~CP~~-C~---~~~DLS~~AF~~iA~-------~~aG~v~V~y~~ 125 (125)
T PLN03024 92 HCPSG-CA---STLDLSREAFAQIAN-------PVAGIINIDYIP 125 (125)
T ss_pred CCCCC-CC---CceEcCHHHHHHhcC-------ccCCEEEEEEeC
Confidence 99942 64 599999999999999 799999999975
No 5
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.91 E-value=8.3e-25 Score=156.11 Aligned_cols=74 Identities=36% Similarity=0.776 Sum_probs=66.6
Q ss_pred EEEeCccccCCCCCCCccEE--ec-CCCCCCC-CcEEEEEeccCCC---------CCCCCCCCceecCHHHHHHhccCch
Q 048390 77 VTAIGPSLYKSGKECGGCYQ--CT-KHPACSG-KAVRVVITDFCGG---------GPFAPESAHFDLSGTAFGAMAIPSQ 143 (159)
Q Consensus 77 iaAls~~l~~~G~~CG~C~e--c~-~~~~C~g-~sV~V~VtD~Cp~---------~~C~~~~~~~DLS~~AF~kia~~~~ 143 (159)
+||+|+.||++|+.||+||| |. ++..|.+ ++|+|+|||+||+ +||.+++.|||||++||.+||+
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~--- 77 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQ--- 77 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCCCCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhh---
Confidence 58999999999999999999 64 4556864 6999999999996 3898888999999999999999
Q ss_pred hhhcccCceeEEEE
Q 048390 144 EAKLRNAGVLEVQY 157 (159)
Q Consensus 144 ~~~l~~~G~i~I~~ 157 (159)
++.|+|+|+|
T Consensus 78 ----~~~Gvi~v~y 87 (87)
T smart00837 78 ----YKAGIVPVKY 87 (87)
T ss_pred ----hcCCEEeeEC
Confidence 8999999998
No 6
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.81 E-value=2.5e-20 Score=129.12 Aligned_cols=70 Identities=40% Similarity=0.765 Sum_probs=58.4
Q ss_pred EEEeCccccCCCCCCCccEE--ec--CCCC--CCC--CcEEEEEeccCCCCCCCCCCCceecCHHHHHHhccCchhhhcc
Q 048390 77 VTAIGPSLYKSGKECGGCYQ--CT--KHPA--CSG--KAVRVVITDFCGGGPFAPESAHFDLSGTAFGAMAIPSQEAKLR 148 (159)
Q Consensus 77 iaAls~~l~~~G~~CG~C~e--c~--~~~~--C~g--~sV~V~VtD~Cp~~~C~~~~~~~DLS~~AF~kia~~~~~~~l~ 148 (159)
+||++..+|++|..||+||+ |. .... |.. ++|+|+|+|+||+ |. .+|||||+.||++|+. +
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~--~~--~~~lDLS~~aF~~la~-------~ 69 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPG--CP--PNHLDLSPAAFKALAD-------P 69 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TT--SS--SSEEEEEHHHHHHTBS-------T
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCC--Cc--CCEEEeCHHHHHHhCC-------C
Confidence 68999999999999999999 41 1222 665 9999999999998 86 4899999999999999 7
Q ss_pred cCceeEEEE
Q 048390 149 NAGVLEVQY 157 (159)
Q Consensus 149 ~~G~i~I~~ 157 (159)
+.|+|+|+|
T Consensus 70 ~~G~i~V~w 78 (78)
T PF03330_consen 70 DAGVIPVEW 78 (78)
T ss_dssp TCSSEEEEE
T ss_pred CceEEEEEC
Confidence 999999999
No 7
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.10 E-value=7.1e-10 Score=88.68 Aligned_cols=97 Identities=26% Similarity=0.331 Sum_probs=78.1
Q ss_pred CCeeEEEEEEeCCCCCCCCCcCCCCCCCCCCCCCCCCeEEEeCccccCCC----CCCCccEEecCCCCCCCCcEEEEEec
Q 048390 39 THWSTAGATWYGSPDGAGNDGGSCGYGNEVSQSPFASFVTAIGPSLYKSG----KECGGCYQCTKHPACSGKAVRVVITD 114 (159)
Q Consensus 39 ~~w~~g~aT~Y~~~~~~g~~~GACGyg~~~~~~~~~~~iaAls~~l~~~G----~~CG~C~ec~~~~~C~g~sV~V~VtD 114 (159)
.+-+.|-|||-+..+ .+||=- +++-+....|.|+++..-+-| +.-|+-.++.+| ++..+|-|||
T Consensus 28 d~~f~G~ATyTgsGY----sGGAfl----LDPI~sd~eITAlNPaqlNlGGipAAmAGaYLrVqGP----KG~TTVYVTD 95 (232)
T COG4305 28 DDLFEGYATYTGSGY----SGGAFL----LDPIPSDMEITALNPAQLNLGGIPAAMAGAYLRVQGP----KGKTTVYVTD 95 (232)
T ss_pred ccccceeEEEecccc----cCceEE----ecCcCCcceeeecCHHHcccCCchhhhccceEEEECC----CCceEEEEec
Confidence 446789999977643 366642 344556788999999877754 457888889988 6788999999
Q ss_pred cCCCCCCCCCCCceecCHHHHHHhccCchhhhcccCceeEEEEE
Q 048390 115 FCGGGPFAPESAHFDLSGTAFGAMAIPSQEAKLRNAGVLEVQYA 158 (159)
Q Consensus 115 ~Cp~~~C~~~~~~~DLS~~AF~kia~~~~~~~l~~~G~i~I~~r 158 (159)
+-|++ .++.||||+.||.+|.+ ++.|+|||+||
T Consensus 96 lYPeg----asGaLDLSpNAFakIGn-------m~qGrIpvqWr 128 (232)
T COG4305 96 LYPEG----ASGALDLSPNAFAKIGN-------MKQGRIPVQWR 128 (232)
T ss_pred ccccc----cccccccChHHHhhhcc-------hhcCccceeEE
Confidence 99982 25899999999999999 99999999998
No 8
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=98.70 E-value=9.4e-09 Score=76.74 Aligned_cols=60 Identities=32% Similarity=0.565 Sum_probs=43.5
Q ss_pred CCCCCCccEEecCCCCCCCCcEEEEEeccCCCCCCCCCCCceecCHHHHHHhccCchhhhcccCceeEEEEE
Q 048390 87 SGKECGGCYQCTKHPACSGKAVRVVITDFCGGGPFAPESAHFDLSGTAFGAMAIPSQEAKLRNAGVLEVQYA 158 (159)
Q Consensus 87 ~G~~CG~C~ec~~~~~C~g~sV~V~VtD~Cp~~~C~~~~~~~DLS~~AF~kia~~~~~~~l~~~G~i~I~~r 158 (159)
.-..||+|+++++. -+|.+++|+|+|+|+. .+|||.+.+|.+|-..+++ ...|.+.|.|+
T Consensus 56 gq~~CGkClrVTNt--~tga~~~~RIVDqCsn-------GGLDld~~vF~~iDtdG~G---~~~Ghl~V~y~ 115 (119)
T PF00967_consen 56 GQDSCGKCLRVTNT--ATGAQVTVRIVDQCSN-------GGLDLDPTVFNQIDTDGQG---YAQGHLIVDYE 115 (119)
T ss_dssp SGGGTT-EEEEE-T--TT--EEEEEEEEE-SS-------SSEES-SSSHHHH-SSSHH---HHHTEEEEEEE
T ss_pred CcccccceEEEEec--CCCcEEEEEEEEcCCC-------CCcccChhHHhhhccCCcc---cccceEEEEEE
Confidence 34679999999986 3689999999999975 4999999999999865554 67788888875
No 9
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=98.59 E-value=4e-07 Score=74.29 Aligned_cols=89 Identities=20% Similarity=0.181 Sum_probs=65.4
Q ss_pred EEEEEeCCCCCCCCCcCCCCCCCCCCCCCCCCeEEEeCccccCCCCCCCccEEecCCCCCCCCcEEEEEeccCCCCCCCC
Q 048390 44 AGATWYGSPDGAGNDGGSCGYGNEVSQSPFASFVTAIGPSLYKSGKECGGCYQCTKHPACSGKAVRVVITDFCGGGPFAP 123 (159)
Q Consensus 44 g~aT~Y~~~~~~g~~~GACGyg~~~~~~~~~~~iaAls~~l~~~G~~CG~C~ec~~~~~C~g~sV~V~VtD~Cp~~~C~~ 123 (159)
|.|+||+..-. ...-|.|-.. ....++||..+-. .|..+++++. -+|++|+|+|+|++|- .
T Consensus 1 G~ASwYg~~f~--G~~TAnGe~y-----~~~~~tAAHktLP------lgT~V~VtNl--~ngrsviVrVnDRGPf---~- 61 (208)
T TIGR00413 1 GLASWYGPKFH--GRKTANGEVY-----NMKALTAAHKTLP------FNTYVKVTNL--HNNRSVIVRINDRGPF---S- 61 (208)
T ss_pred CEEeEeCCCCC--CCcCCCCeec-----CCCccccccccCC------CCCEEEEEEC--CCCCEEEEEEeCCCCC---C-
Confidence 67999997421 1234444332 2346888876544 4578888875 3689999999999995 3
Q ss_pred CCCceecCHHHHHHhccCchhhhcccCceeEEEEE
Q 048390 124 ESAHFDLSGTAFGAMAIPSQEAKLRNAGVLEVQYA 158 (159)
Q Consensus 124 ~~~~~DLS~~AF~kia~~~~~~~l~~~G~i~I~~r 158 (159)
+..-+|||+.|+++|.. .+.|+.+|+.+
T Consensus 62 ~gRiIDLS~aAA~~Lg~-------~~~G~a~V~ve 89 (208)
T TIGR00413 62 DDRIIDLSHAAAREIGL-------ISRGVGQVRIE 89 (208)
T ss_pred CCCEEECCHHHHHHcCC-------CcCceEEEEEE
Confidence 34799999999999999 89999988865
No 10
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=98.47 E-value=8.6e-07 Score=73.46 Aligned_cols=66 Identities=23% Similarity=0.236 Sum_probs=52.7
Q ss_pred CCeEEEeCccccCCCCCCCccEEecCCCCCCCCcEEEEEeccCCCCCCCCCCCceecCHHHHHHhccCchhhhcccCcee
Q 048390 74 ASFVTAIGPSLYKSGKECGGCYQCTKHPACSGKAVRVVITDFCGGGPFAPESAHFDLSGTAFGAMAIPSQEAKLRNAGVL 153 (159)
Q Consensus 74 ~~~iaAls~~l~~~G~~CG~C~ec~~~~~C~g~sV~V~VtD~Cp~~~C~~~~~~~DLS~~AF~kia~~~~~~~l~~~G~i 153 (159)
..++||.-+-.|. .-.+++|- -+|++|+|+|.|++| +.. ...||||..|+++|+. .+.|+.
T Consensus 108 ~~~tAAH~TLP~~------t~v~VtNl--~NgrsvvVRINDRGP---f~~-gRiIDlS~aAA~~l~~-------~~~G~a 168 (233)
T COG0797 108 NALTAAHKTLPLP------TYVRVTNL--DNGRSVVVRINDRGP---FVS-GRIIDLSKAAADKLGM-------IRSGVA 168 (233)
T ss_pred cccccccccCCCC------CEEEEEEc--cCCcEEEEEEeCCCC---CCC-CcEeEcCHHHHHHhCC-------ccCceE
Confidence 4677877766664 45667764 368999999999999 454 4799999999999999 899998
Q ss_pred EEEEE
Q 048390 154 EVQYA 158 (159)
Q Consensus 154 ~I~~r 158 (159)
+|+.+
T Consensus 169 ~V~i~ 173 (233)
T COG0797 169 KVRIE 173 (233)
T ss_pred EEEEE
Confidence 87765
No 11
>PRK10672 rare lipoprotein A; Provisional
Probab=98.21 E-value=1.4e-05 Score=70.12 Aligned_cols=89 Identities=17% Similarity=0.116 Sum_probs=62.8
Q ss_pred EEEEEEeCCCCCCCCCcCCCCCCCCCCCCCCCCeEEEeCccccCCCCCCCccEEecCCCCCCCCcEEEEEeccCCCCCCC
Q 048390 43 TAGATWYGSPDGAGNDGGSCGYGNEVSQSPFASFVTAIGPSLYKSGKECGGCYQCTKHPACSGKAVRVVITDFCGGGPFA 122 (159)
Q Consensus 43 ~g~aT~Y~~~~~~g~~~GACGyg~~~~~~~~~~~iaAls~~l~~~G~~CG~C~ec~~~~~C~g~sV~V~VtD~Cp~~~C~ 122 (159)
.|.|+||+..... ..-|-|-.. ....++||...-.|. ..+++++. -+|++|+|+|+|++|- .
T Consensus 80 ~G~ASwYg~~f~G--~~TA~Ge~~-----~~~~~tAAH~tLPlp------s~vrVtNl--~ngrsvvVrVnDRGP~---~ 141 (361)
T PRK10672 80 AGLAAIYDAEAGS--NLTASGERF-----DPNALTAAHPTLPIP------SYVRVTNL--ANGRMIVVRINDRGPY---G 141 (361)
T ss_pred EEEEEEeCCccCC--CcCcCceee-----cCCcCeeeccCCCCC------CEEEEEEC--CCCcEEEEEEeCCCCC---C
Confidence 7899999975211 122333222 234688887665553 66778875 3689999999999995 3
Q ss_pred CCCCceecCHHHHHHhccCchhhhcccCceeEEEE
Q 048390 123 PESAHFDLSGTAFGAMAIPSQEAKLRNAGVLEVQY 157 (159)
Q Consensus 123 ~~~~~~DLS~~AF~kia~~~~~~~l~~~G~i~I~~ 157 (159)
+..-||||..|+++|.. ...+.|.|++
T Consensus 142 -~gRiiDLS~aAA~~Lg~-------~~~~~V~ve~ 168 (361)
T PRK10672 142 -PGRVIDLSRAAADRLNT-------SNNTKVRIDP 168 (361)
T ss_pred -CCCeeEcCHHHHHHhCC-------CCCceEEEEE
Confidence 35799999999999998 5667777765
No 12
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.12 E-value=1.3e-05 Score=60.40 Aligned_cols=68 Identities=21% Similarity=0.495 Sum_probs=48.4
Q ss_pred CeEEEeCcc-ccCCCCCCCccEEecCCCCCCCCcEEEEEeccCCCCCCCCCCCceecCHHHHHHhccCchhhhcccCcee
Q 048390 75 SFVTAIGPS-LYKSGKECGGCYQCTKHPACSGKAVRVVITDFCGGGPFAPESAHFDLSGTAFGAMAIPSQEAKLRNAGVL 153 (159)
Q Consensus 75 ~~iaAls~~-l~~~G~~CG~C~ec~~~~~C~g~sV~V~VtD~Cp~~~C~~~~~~~DLS~~AF~kia~~~~~~~l~~~G~i 153 (159)
..|.+.... -| |...||.|+|.+- ++++|.|..+|.-+ ..|+|+.+||+.|.+ ++. .+.|+|
T Consensus 43 p~IGg~~~V~gW-nS~~CGtC~~lty----~g~si~vlaID~a~--------~gfnis~~A~n~LT~-g~a---~~lG~V 105 (119)
T PF07249_consen 43 PYIGGAPAVAGW-NSPNCGTCWKLTY----NGRSIYVLAIDHAG--------GGFNISLDAMNDLTN-GQA---VELGRV 105 (119)
T ss_dssp TSEEEETT--ST-T-TTTT-EEEEEE----TTEEEEEEEEEE-S--------SSEEE-HHHHHHHHT-S-C---CCC-EE
T ss_pred CeeccccccccC-CCCCCCCeEEEEE----CCeEEEEEEEecCC--------CcccchHHHHHHhcC-Ccc---cceeEE
Confidence 567777663 46 5589999999874 48999999999954 369999999999997 233 467999
Q ss_pred EEEEEC
Q 048390 154 EVQYAR 159 (159)
Q Consensus 154 ~I~~rr 159 (159)
+++|++
T Consensus 106 ~a~~~q 111 (119)
T PF07249_consen 106 DATYTQ 111 (119)
T ss_dssp E-EEEE
T ss_pred EEEEEE
Confidence 999974
No 13
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=83.17 E-value=0.84 Score=37.40 Aligned_cols=41 Identities=32% Similarity=0.446 Sum_probs=26.7
Q ss_pred CCCCccEEecCC-CCCCCCcEEEEEeccCCCCCCCCCCCceecCHH
Q 048390 89 KECGGCYQCTKH-PACSGKAVRVVITDFCGGGPFAPESAHFDLSGT 133 (159)
Q Consensus 89 ~~CG~C~ec~~~-~~C~g~sV~V~VtD~Cp~~~C~~~~~~~DLS~~ 133 (159)
..|++|||.+=. ..-.||..+|+||+.--+ ...+||||..+
T Consensus 82 ~~Cc~Cy~LtFt~g~l~GKkmiVQ~tNtG~d----lg~n~FDl~iP 123 (201)
T PF02015_consen 82 SWCCACYELTFTSGPLKGKKMIVQVTNTGGD----LGSNQFDLAIP 123 (201)
T ss_dssp HHTT-EEEEEE-SSTTTT-EEEEEEEEE-TT----TTTTEEEEE-T
T ss_pred CcccceEEEEEcCCCcCCCEeEEEecccCCC----CCCCeEEEEeC
Confidence 569999994321 234689999999998754 23589999765
No 14
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=21.05 E-value=69 Score=25.33 Aligned_cols=23 Identities=35% Similarity=0.415 Sum_probs=17.4
Q ss_pred ccccchHHHHHHHHHHHhhcccc
Q 048390 5 SSVSLSLSFFLDLLCYLELCSCF 27 (159)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~ 27 (159)
+++-++..+.|++++|+++.+|.
T Consensus 8 ~sv~i~igi~Ll~lLl~cgiGcv 30 (158)
T PF11770_consen 8 TSVAISIGISLLLLLLLCGIGCV 30 (158)
T ss_pred chHHHHHHHHHHHHHHHHhcceE
Confidence 45556788888888888888884
Done!