BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048392
(515 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 525 bits (1353), Expect = e-149, Method: Compositional matrix adjust.
Identities = 253/511 (49%), Positives = 349/511 (68%), Gaps = 14/511 (2%)
Query: 7 FVQCLLENSEDSTSISKLIYTRTNSSFSSILDFSIQNLRFSTPTTPKPQVIVTPVKESHV 66
F++C ++ ++ + KL+YT+ + + SIL+ +IQNLRF + TTPKP VIVTP SH+
Sbjct: 7 FLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNSHI 66
Query: 67 QAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTAWVQA 126
QA + CS+K GLQ+R RSGGHD EG+SY+S VPFV++D N+ S+ +D ++TAWV+A
Sbjct: 67 QATILCSKKVGLQIRTRSGGHDAEGMSYIS--QVPFVVVDLRNMHSIKIDVHSQTAWVEA 124
Query: 127 GATNGKVYHTIAEKSKTLAFPAGVCPTXXXXXXXXXXXXXXXMRKYGLAADNVVDAHLID 186
GAT G+VY+ I EK++ L+FP G CPT MR YGLAADN++DAHL++
Sbjct: 125 GATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLVN 184
Query: 187 VNGRLLDRKSMGEDLFWAIRGGGGASFGVIIAWKIKLVTVPEIVTAFTVNRTLE-QNATK 245
V+G++LDRKSMGEDLFWAIRGGGG +FG+I AWKIKLV VP T F+V + +E K
Sbjct: 185 VDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVK 244
Query: 246 IVDRWQHVADNLDEDLYIRVFLRSAN---SSTQGKKTIRASFESLFLGGADVLLPLMQHS 302
+ ++WQ++A D+DL + + N + + K T+ F S+F GG D L+ LM S
Sbjct: 245 LFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKS 304
Query: 303 FPELGLVKEDCIEMSWIESIMYFAG---FRGQSL--DVLLNRTQPNVRFFKAKSDFVYDP 357
FPELG+ K DC E SWI++ ++++G F + ++LL+R+ F K D+V P
Sbjct: 305 FPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKKP 364
Query: 358 MPEIAFQGIYERFYEKEAEAAEMILSPYGGVMNQISDSATPFPHRAGTRYKIQHIVYWEE 417
+PE A I E+ YE++ A +L PYGG+M +IS+SA PFPHRAG Y++ + WE+
Sbjct: 365 IPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTASWEK 424
Query: 418 EGSEASQRHISWIRRLYDYVAPYVSKNPRAAYLNYRDLDIG-TNNKGYTSYKQASIWGLK 476
+ E +++HI+W+R +Y++ PYVS+NPR AYLNYRDLD+G TN+ +Y QA IWG K
Sbjct: 425 Q--EDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIWGEK 482
Query: 477 YFKNNFKRLVDVKTMVDPGNFFRNEQSIPPL 507
YF NF RLV VKT VDP NFFRNEQSIPPL
Sbjct: 483 YFGKNFNRLVKVKTKVDPNNFFRNEQSIPPL 513
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 454 bits (1167), Expect = e-128, Method: Compositional matrix adjust.
Identities = 226/504 (44%), Positives = 320/504 (63%), Gaps = 21/504 (4%)
Query: 7 FVQCLLENSEDSTSISKLIYTRTNSSFSSILDFSIQNLRFSTPTTPKPQVIVTPVKESHV 66
F+ CL++ +L+Y +++ ++ S+L +I+N R+S+P KP I+TP + SH+
Sbjct: 11 FLGCLVKEIP-----PRLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQVSHI 65
Query: 67 QAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTAWVQA 126
Q+AV C +++ +++RVRSGGHDYEGLSY S F ++D + +V VD +A+TAWV +
Sbjct: 66 QSAVVCGRRHSVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKARTAWVDS 125
Query: 127 GATNGKVYHTIAEKSKTLAFPAGVCPTXXXXXXXXXXXXXXXMRKYGLAADNVVDAHLID 186
GA G++Y+ I + S TLAFPAGVCPT +RKYG+AA+NV+D L+D
Sbjct: 126 GAQLGELYYAIYKASPTLAFPAGVCPTIGVGGNFAGGGFGMLLRKYGIAAENVIDVKLVD 185
Query: 187 VNGRLLDRKSMGEDLFWAIRGGGGASFGVIIAWKIKLVTVPEIVTAFTVNRTLEQNATKI 246
NG+L D+KSMG+D FWA+RGGGG SFG+++AW++KL+ VP VT F +++T+ + A I
Sbjct: 186 ANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSEGAVDI 245
Query: 247 VDRWQHVADNLDEDLYIRVFLRSANSSTQGKKTIRASFESLFLGGADVLLPLMQHSFPEL 306
+++WQ VA L DL IR+ QG K A+FE+++LG L PLM FPEL
Sbjct: 246 INKWQVVAPQLPADLMIRII-------AQGPK---ATFEAMYLGTCKTLTPLMSSKFPEL 295
Query: 307 GLVKEDCIEMSWIESIMYF-AGFRGQSLDVLLNRTQPNVRFFKAKSDFVYDPMPEIAFQG 365
G+ C EMSWI+SI + G R D LLNR F + KSD+VY P P+ ++
Sbjct: 296 GMNPSHCNEMSWIQSIPFVHLGHRDALEDDLLNRQNSFKPFAEYKSDYVYQPFPKTVWEQ 355
Query: 366 IYERFYEKEAEAAEMILSPYGGVMNQISDSATPFPHRAGTRYKIQHIVYWEEEGSEASQR 425
I + K A MI PYG ++ +SATPFPHR G + IQ++ YW G+ A+
Sbjct: 356 ILNTWLVKPG-AGIMIFDPYGATISATPESATPFPHRKGVLFNIQYVNYWFAPGAAAAP- 413
Query: 426 HISWIRRLYDYVAPYVSKNPRAAYLNYRDLDIGTNN--KGYTSYKQASIWGLKYFKNNFK 483
+SW + +Y+Y+ PYVSKNPR AY NYRD+D+G N ++Y +WG KYFK NF+
Sbjct: 414 -LSWSKDIYNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWGQKYFKGNFE 472
Query: 484 RLVDVKTMVDPGNFFRNEQSIPPL 507
RL K VDP ++FRNEQSIPPL
Sbjct: 473 RLAITKGKVDPTDYFRNEQSIPPL 496
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 451 bits (1160), Expect = e-127, Method: Compositional matrix adjust.
Identities = 227/504 (45%), Positives = 321/504 (63%), Gaps = 23/504 (4%)
Query: 7 FVQCLLENSEDSTSISKLIYTRTNSSFSSILDFSIQNLRFSTPTTPKPQVIVTPVKESHV 66
F+ CL ++ + +Y +++ +++S+ +++N++F + T KP I+TP SH+
Sbjct: 13 FLTCLTKDIP-----PRQLYAKSSPAYASVWSSTVRNIKFLSDKTVKPLYIITPTNASHI 67
Query: 67 QAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTAWVQA 126
QAAV C +++G+++RVRSGGHDYEGLSY S PF ++D + +VS+D +A TAWV +
Sbjct: 68 QAAVVCGRRHGMRIRVRSGGHDYEGLSYRSEKPEPFAVVDMNKMRAVSIDGKAATAWVDS 127
Query: 127 GATNGKVYHTIAEKSKTLAFPAGVCPTXXXXXXXXXXXXXXXMRKYGLAADNVVDAHLID 186
GA G +Y+ IA+ S L FPAGVC T +RKYG AADNV+DA ++D
Sbjct: 128 GAQLGDLYYGIAKASPKLGFPAGVCTTIGVGGHFSGGGFGMLLRKYGTAADNVIDAKVVD 187
Query: 187 VNGRLLDRKSMGEDLFWAIRGGGGASFGVIIAWKIKLVTVPEIVTAFTVNRTLEQNATKI 246
GRLLDRK+MGED FWAIRGGGG SFG++ +W++KL+ VP VT F V++ +++ A +
Sbjct: 188 AQGRLLDRKAMGEDHFWAIRGGGGESFGIVASWQVKLLPVPPKVTVFQVHKGIKEGAIDL 247
Query: 247 VDRWQHVADNLDEDLYIRVFLRSANSSTQGKKTIRASFESLFLGGADVLLPLMQHSFPEL 306
V +WQ VA L +DL IR+ + QG A FE+L+LG L+ LM FPEL
Sbjct: 248 VTKWQTVAPALPDDLMIRIM-----AMGQG-----AMFEALYLGTCKDLVLLMTARFPEL 297
Query: 307 GLVKEDCIEMSWIESIMYFA-GFRGQSLDVLLNRTQPNVRFFKAKSDFVYDPMPEIAFQG 365
G+ C EM+WIES+ Y G +G D LLNRT F K KSD+V +P+P+ ++
Sbjct: 298 GMNATHCKEMTWIESVPYIPMGPKGTVRD-LLNRTSNIKAFGKYKSDYVLEPIPKSDWEK 356
Query: 366 IYERFYEKEAEAAEMILSPYGGVMNQISDSATPFPHRAGTRYKIQHIVYWEEEGSEASQR 425
I+ + + A MI+ PYGG + + +SATPFP R+G + IQ++VYW EG+ A
Sbjct: 357 IFT--WLVKPGAGVMIMDPYGGGIASVPESATPFPRRSGVLFNIQYVVYWFGEGAAALPT 414
Query: 426 HISWIRRLYDYVAPYVSKNPRAAYLNYRDLDIGTNN--KGYTSYKQASIWGLKYFKNNFK 483
W R +YD++ PYVSKNPR AY+NYRDLD+G N ++Y +WG KYFK NF+
Sbjct: 415 Q--WTRDIYDFMTPYVSKNPRQAYVNYRDLDLGVNQVVGNVSTYASGKVWGEKYFKGNFE 472
Query: 484 RLVDVKTMVDPGNFFRNEQSIPPL 507
RL K +DP ++FRNEQSIPPL
Sbjct: 473 RLARTKGKIDPEDYFRNEQSIPPL 496
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 380 bits (977), Expect = e-106, Method: Compositional matrix adjust.
Identities = 205/488 (42%), Positives = 292/488 (59%), Gaps = 19/488 (3%)
Query: 29 TNSSFSSILDFSIQNLRFSTPTTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHD 88
++S F+ L SIQN F KP I+ P + + ++C +K +R+RSGGH
Sbjct: 46 SDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHS 105
Query: 89 YEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTAWVQAGATNGKVYHTIAEKSKTLAFPA 148
YEGLSY S+ PF++ID +NL+ VS+D E++TAWV++G+T G++Y+ I E S L F A
Sbjct: 106 YEGLSYTSD--TPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTA 163
Query: 149 GVCPTXXXXXXXXXXXXXXXMRKYGLAADNVVDAHLIDVNGRLLDRKSMGEDLFWAIRGG 208
G CPT RKYGLAADNVVDA LID NG +LDR++MGED+FWAIRGG
Sbjct: 164 GWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGG 223
Query: 209 GGASFGVIIAWKIKLVTVPEIVTAFTVNRTLE-QNATKIVDRWQHVADNLDEDLYIRVFL 267
GG +G I AWKIKL+ VPE VT F V + + AT ++ +WQ VA+ L+ED + V
Sbjct: 224 GGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVL- 282
Query: 268 RSANSSTQGKKTIRASFESLFLGGADVLLPLMQHSFPELGLVKEDCIEMSWIESIMYFAG 327
+K + + G V FPELGLV+ED +EMSW ES Y AG
Sbjct: 283 -----GGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAG 337
Query: 328 FRGQSLDVLLNR-TQPNVRFFKAKSDFVYDPMPEIAFQGIYERFYEKEAEAAEMILSPYG 386
+++ L NR + + R FK K D +P+P AF G+ ER KE + L+ +G
Sbjct: 338 L--ETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERL-SKEPNGF-IALNGFG 393
Query: 387 GVMNQISDSATPFPHRAGTRYKIQHIVYWEEEGSEASQRHISWIRRLYDYVAPYVSKNPR 446
G M++IS TPFPHR+GTR +++IV W + + + W+ ++Y+++ P+VSKNPR
Sbjct: 394 GQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPR 453
Query: 447 AAYLNYRDLDIGTNNKGYTSYKQASI-----WGLKYFKNNFKRLVDVKTMVDPGNFFRNE 501
Y+N+ DLD+G + G + +I WG YF +N++RL+ KT++DP N F +
Sbjct: 454 LGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHP 513
Query: 502 QSIPPLSS 509
QSIPP+++
Sbjct: 514 QSIPPMAN 521
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 380 bits (977), Expect = e-106, Method: Compositional matrix adjust.
Identities = 205/487 (42%), Positives = 291/487 (59%), Gaps = 19/487 (3%)
Query: 29 TNSSFSSILDFSIQNLRFSTPTTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHD 88
++S F+ L SIQN F KP I+ P + + ++C +K +R+RSGGH
Sbjct: 21 SDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHS 80
Query: 89 YEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTAWVQAGATNGKVYHTIAEKSKTLAFPA 148
YEGLSY S+ PF++ID +NL+ VS+D E++TAWV++G+T G++Y+ I E S L F A
Sbjct: 81 YEGLSYTSD--TPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTA 138
Query: 149 GVCPTXXXXXXXXXXXXXXXMRKYGLAADNVVDAHLIDVNGRLLDRKSMGEDLFWAIRGG 208
G CPT RKYGLAADNVVDA LID NG +LDR++MGED+FWAIRGG
Sbjct: 139 GWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGG 198
Query: 209 GGASFGVIIAWKIKLVTVPEIVTAFTVNRTLE-QNATKIVDRWQHVADNLDEDLYIRVFL 267
GG +G I AWKIKL+ VPE VT F V + + AT ++ +WQ VA+ L+ED + V
Sbjct: 199 GGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVL- 257
Query: 268 RSANSSTQGKKTIRASFESLFLGGADVLLPLMQHSFPELGLVKEDCIEMSWIESIMYFAG 327
+K + + G V FPELGLV+ED +EMSW ES Y AG
Sbjct: 258 -----GGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAG 312
Query: 328 FRGQSLDVLLNR-TQPNVRFFKAKSDFVYDPMPEIAFQGIYERFYEKEAEAAEMILSPYG 386
+++ L NR + + R FK K D +P+P AF G+ ER KE + L+ +G
Sbjct: 313 L--ETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERL-SKEPNGF-IALNGFG 368
Query: 387 GVMNQISDSATPFPHRAGTRYKIQHIVYWEEEGSEASQRHISWIRRLYDYVAPYVSKNPR 446
G M++IS TPFPHR+GTR +++IV W + + + W+ ++Y+++ P+VSKNPR
Sbjct: 369 GQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPR 428
Query: 447 AAYLNYRDLDIGTNNKGYTSYKQASI-----WGLKYFKNNFKRLVDVKTMVDPGNFFRNE 501
Y+N+ DLD+G + G + +I WG YF +N++RL+ KT++DP N F +
Sbjct: 429 LGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHP 488
Query: 502 QSIPPLS 508
QSIPP++
Sbjct: 489 QSIPPMA 495
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 380 bits (977), Expect = e-106, Method: Compositional matrix adjust.
Identities = 205/488 (42%), Positives = 292/488 (59%), Gaps = 19/488 (3%)
Query: 29 TNSSFSSILDFSIQNLRFSTPTTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHD 88
++S F+ L SIQN F KP I+ P + + ++C +K +R+RSGGH
Sbjct: 27 SDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHS 86
Query: 89 YEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTAWVQAGATNGKVYHTIAEKSKTLAFPA 148
YEGLSY S+ PF++ID +NL+ VS+D E++TAWV++G+T G++Y+ I E S L F A
Sbjct: 87 YEGLSYTSD--TPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTA 144
Query: 149 GVCPTXXXXXXXXXXXXXXXMRKYGLAADNVVDAHLIDVNGRLLDRKSMGEDLFWAIRGG 208
G CPT RKYGLAADNVVDA LID NG +LDR++MGED+FWAIRGG
Sbjct: 145 GWCPTVGTGGAISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGG 204
Query: 209 GGASFGVIIAWKIKLVTVPEIVTAFTVNRTLE-QNATKIVDRWQHVADNLDEDLYIRVFL 267
GG +G I AWKIKL+ VPE VT F V + + AT ++ +WQ VA+ L+ED + V
Sbjct: 205 GGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVL- 263
Query: 268 RSANSSTQGKKTIRASFESLFLGGADVLLPLMQHSFPELGLVKEDCIEMSWIESIMYFAG 327
+K + + G V FPELGLV+ED +EMSW ES Y AG
Sbjct: 264 -----GGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAG 318
Query: 328 FRGQSLDVLLNR-TQPNVRFFKAKSDFVYDPMPEIAFQGIYERFYEKEAEAAEMILSPYG 386
+++ L NR + + R FK K D +P+P AF G+ ER KE + L+ +G
Sbjct: 319 L--ETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERL-SKEPNGF-IALNGFG 374
Query: 387 GVMNQISDSATPFPHRAGTRYKIQHIVYWEEEGSEASQRHISWIRRLYDYVAPYVSKNPR 446
G M++IS TPFPHR+GTR +++IV W + + + W+ ++Y+++ P+VSKNPR
Sbjct: 375 GQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPR 434
Query: 447 AAYLNYRDLDIGTNNKGYTSYKQASI-----WGLKYFKNNFKRLVDVKTMVDPGNFFRNE 501
Y+N+ DLD+G + G + +I WG YF +N++RL+ KT++DP N F +
Sbjct: 435 LGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHP 494
Query: 502 QSIPPLSS 509
QSIPP+++
Sbjct: 495 QSIPPMAN 502
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 380 bits (977), Expect = e-106, Method: Compositional matrix adjust.
Identities = 205/488 (42%), Positives = 292/488 (59%), Gaps = 19/488 (3%)
Query: 29 TNSSFSSILDFSIQNLRFSTPTTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHD 88
++S F+ L SIQN F KP I+ P + + ++C +K +R+RSGGH
Sbjct: 27 SDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHS 86
Query: 89 YEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTAWVQAGATNGKVYHTIAEKSKTLAFPA 148
YEGLSY S+ PF++ID +NL+ VS+D E++TAWV++G+T G++Y+ I E S L F A
Sbjct: 87 YEGLSYTSD--TPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTA 144
Query: 149 GVCPTXXXXXXXXXXXXXXXMRKYGLAADNVVDAHLIDVNGRLLDRKSMGEDLFWAIRGG 208
G CPT RKYGLAADNVVDA LID NG +LDR++MGED+FWAIRGG
Sbjct: 145 GWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGG 204
Query: 209 GGASFGVIIAWKIKLVTVPEIVTAFTVNRTLE-QNATKIVDRWQHVADNLDEDLYIRVFL 267
GG +G I AWKIKL+ VPE VT F V + + AT ++ +WQ VA+ L+ED + V
Sbjct: 205 GGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVL- 263
Query: 268 RSANSSTQGKKTIRASFESLFLGGADVLLPLMQHSFPELGLVKEDCIEMSWIESIMYFAG 327
+K + + G V FPELGLV+ED +EMSW ES Y AG
Sbjct: 264 -----GGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAG 318
Query: 328 FRGQSLDVLLNR-TQPNVRFFKAKSDFVYDPMPEIAFQGIYERFYEKEAEAAEMILSPYG 386
+++ L NR + + R FK K D +P+P AF G+ ER KE + L+ +G
Sbjct: 319 L--ETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERL-SKEPNGF-IALNGFG 374
Query: 387 GVMNQISDSATPFPHRAGTRYKIQHIVYWEEEGSEASQRHISWIRRLYDYVAPYVSKNPR 446
G M++IS TPFPHR+GTR +++IV W + + + W+ ++Y+++ P+VSKNPR
Sbjct: 375 GQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPR 434
Query: 447 AAYLNYRDLDIGTNNKGYTSYKQASI-----WGLKYFKNNFKRLVDVKTMVDPGNFFRNE 501
Y+N+ DLD+G + G + +I WG YF +N++RL+ KT++DP N F +
Sbjct: 435 LGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHP 494
Query: 502 QSIPPLSS 509
QSIPP+++
Sbjct: 495 QSIPPMAN 502
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 377 bits (967), Expect = e-104, Method: Compositional matrix adjust.
Identities = 204/487 (41%), Positives = 290/487 (59%), Gaps = 19/487 (3%)
Query: 29 TNSSFSSILDFSIQNLRFSTPTTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHD 88
++S F+ L SIQN F KP I+ P + + ++C +K +R+RSGG
Sbjct: 24 SDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGAS 83
Query: 89 YEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTAWVQAGATNGKVYHTIAEKSKTLAFPA 148
YEGLSY S+ PF++ID +NL+ VS+D E++TAWV++G+T G++Y+ I E S L F A
Sbjct: 84 YEGLSYTSD--TPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTA 141
Query: 149 GVCPTXXXXXXXXXXXXXXXMRKYGLAADNVVDAHLIDVNGRLLDRKSMGEDLFWAIRGG 208
G CPT RKYGLAADNVVDA LID NG +LDR++MGED+FWAIRGG
Sbjct: 142 GWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGG 201
Query: 209 GGASFGVIIAWKIKLVTVPEIVTAFTVNRTLE-QNATKIVDRWQHVADNLDEDLYIRVFL 267
GG +G I AWKIKL+ VPE VT F V + + AT ++ +WQ VA+ L+ED + V
Sbjct: 202 GGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVL- 260
Query: 268 RSANSSTQGKKTIRASFESLFLGGADVLLPLMQHSFPELGLVKEDCIEMSWIESIMYFAG 327
+K + + G V FPELGLV+ED +EMSW ES Y AG
Sbjct: 261 -----GGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAG 315
Query: 328 FRGQSLDVLLNR-TQPNVRFFKAKSDFVYDPMPEIAFQGIYERFYEKEAEAAEMILSPYG 386
+++ L NR + + R FK K D +P+P AF G+ ER KE + L+ +G
Sbjct: 316 L--ETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERL-SKEPNGF-IALNGFG 371
Query: 387 GVMNQISDSATPFPHRAGTRYKIQHIVYWEEEGSEASQRHISWIRRLYDYVAPYVSKNPR 446
G M++IS TPFPHR+GTR +++IV W + + + W+ ++Y+++ P+VSKNPR
Sbjct: 372 GQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPR 431
Query: 447 AAYLNYRDLDIGTNNKGYTSYKQASI-----WGLKYFKNNFKRLVDVKTMVDPGNFFRNE 501
Y+N+ DLD+G + G + +I WG YF +N++RL+ KT++DP N F +
Sbjct: 432 LGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHP 491
Query: 502 QSIPPLS 508
QSIPP++
Sbjct: 492 QSIPPMA 498
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 377 bits (967), Expect = e-104, Method: Compositional matrix adjust.
Identities = 204/488 (41%), Positives = 291/488 (59%), Gaps = 19/488 (3%)
Query: 29 TNSSFSSILDFSIQNLRFSTPTTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHD 88
++S F+ L SIQN F KP I+ P + + ++C +K +R+RSGGH
Sbjct: 21 SDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHS 80
Query: 89 YEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTAWVQAGATNGKVYHTIAEKSKTLAFPA 148
YEGLSY S+ PF++ID +NL+ VS+D E++TAWV++G+T G++Y+ I E S L F A
Sbjct: 81 YEGLSYTSD--TPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTA 138
Query: 149 GVCPTXXXXXXXXXXXXXXXMRKYGLAADNVVDAHLIDVNGRLLDRKSMGEDLFWAIRGG 208
G PT RKYGLAADNVVDA LID NG +LDR++MGED+FWAIRGG
Sbjct: 139 GWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGG 198
Query: 209 GGASFGVIIAWKIKLVTVPEIVTAFTVNRTLE-QNATKIVDRWQHVADNLDEDLYIRVFL 267
GG +G I AWKIKL+ VPE VT F V + + AT ++ +WQ VA+ L+ED + V
Sbjct: 199 GGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVL- 257
Query: 268 RSANSSTQGKKTIRASFESLFLGGADVLLPLMQHSFPELGLVKEDCIEMSWIESIMYFAG 327
+K + + G V FPELGLV+ED +EMSW ES Y AG
Sbjct: 258 -----GGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAG 312
Query: 328 FRGQSLDVLLNR-TQPNVRFFKAKSDFVYDPMPEIAFQGIYERFYEKEAEAAEMILSPYG 386
+++ L NR + + R FK K D +P+P AF G+ ER KE + L+ +G
Sbjct: 313 L--ETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERL-SKEPNGF-IALNGFG 368
Query: 387 GVMNQISDSATPFPHRAGTRYKIQHIVYWEEEGSEASQRHISWIRRLYDYVAPYVSKNPR 446
G M++IS TPFPHR+GTR +++IV W + + + W+ ++Y+++ P+VSKNPR
Sbjct: 369 GQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPR 428
Query: 447 AAYLNYRDLDIGTNNKGYTSYKQASI-----WGLKYFKNNFKRLVDVKTMVDPGNFFRNE 501
Y+N+ DLD+G + G + +I WG YF +N++RL+ KT++DP N F +
Sbjct: 429 LGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHP 488
Query: 502 QSIPPLSS 509
QSIPP+++
Sbjct: 489 QSIPPMAN 496
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 376 bits (966), Expect = e-104, Method: Compositional matrix adjust.
Identities = 204/487 (41%), Positives = 290/487 (59%), Gaps = 19/487 (3%)
Query: 29 TNSSFSSILDFSIQNLRFSTPTTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHD 88
++S F+ L SIQN F KP I+ P + + ++C +K +R+RSGGH
Sbjct: 21 SDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHS 80
Query: 89 YEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTAWVQAGATNGKVYHTIAEKSKTLAFPA 148
YEGLSY S+ PF++ID +NL+ VS+D E++TAWV++G+T G++Y+ I E S L F A
Sbjct: 81 YEGLSYTSD--TPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTA 138
Query: 149 GVCPTXXXXXXXXXXXXXXXMRKYGLAADNVVDAHLIDVNGRLLDRKSMGEDLFWAIRGG 208
G PT RKYGLAADNVVDA LID NG +LDR++MGED+FWAIRGG
Sbjct: 139 GWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGG 198
Query: 209 GGASFGVIIAWKIKLVTVPEIVTAFTVNRTLE-QNATKIVDRWQHVADNLDEDLYIRVFL 267
GG +G I AWKIKL+ VPE VT F V + + AT ++ +WQ VA+ L+ED + V
Sbjct: 199 GGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVL- 257
Query: 268 RSANSSTQGKKTIRASFESLFLGGADVLLPLMQHSFPELGLVKEDCIEMSWIESIMYFAG 327
+K + + G V FPELGLV+ED +EMSW ES Y AG
Sbjct: 258 -----GGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAG 312
Query: 328 FRGQSLDVLLNR-TQPNVRFFKAKSDFVYDPMPEIAFQGIYERFYEKEAEAAEMILSPYG 386
+++ L NR + + R FK K D +P+P AF G+ ER KE + L+ +G
Sbjct: 313 L--ETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERL-SKEPNGF-IALNGFG 368
Query: 387 GVMNQISDSATPFPHRAGTRYKIQHIVYWEEEGSEASQRHISWIRRLYDYVAPYVSKNPR 446
G M++IS TPFPHR+GTR +++IV W + + + W+ ++Y+++ P+VSKNPR
Sbjct: 369 GQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPR 428
Query: 447 AAYLNYRDLDIGTNNKGYTSYKQASI-----WGLKYFKNNFKRLVDVKTMVDPGNFFRNE 501
Y+N+ DLD+G + G + +I WG YF +N++RL+ KT++DP N F +
Sbjct: 429 LGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHP 488
Query: 502 QSIPPLS 508
QSIPP++
Sbjct: 489 QSIPPMA 495
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 111/470 (23%), Positives = 201/470 (42%), Gaps = 50/470 (10%)
Query: 54 PQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVS-NYHVPFVIIDFINLSS 112
P I +H+Q+AV+C++K L+V +SGGH Y + N H+ + I++
Sbjct: 37 PTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENGHLMVQLDRMIDV-- 94
Query: 113 VSVDPEAKTAWVQAGATNGKVYHTIAEKSKTLAFPAGVCPTXXXXXXXXXXXXXXXMRKY 172
+S + + A V+ GA G + + +K A G CP +
Sbjct: 95 ISYNDKTGIAHVEPGARLGHLATVLNDKYGR-AISHGTCPGVGISGHFAHGGFGFSSHMH 153
Query: 173 GLAADNVVDAHLIDVNGRLLDRKSM-GEDLFWAIRGGGGASFGVIIAWKIKLVTVPEIVT 231
GLA D+VV ++ +GR+++ + DLFW I+ G G++FG++ WK+ P+++T
Sbjct: 154 GLAVDSVVGVTVVLADGRIVEASATENADLFWGIK-GAGSNFGIVAVWKLATFPAPKVLT 212
Query: 232 AFTVNRTLEQNATKIVDRWQHVADNLDEDLYIR-VFLRSANSSTQGKKTIRASFESLFLG 290
F V +N T + + V D Y R V R N E L+ G
Sbjct: 213 RFGVTLNW-KNKTSALKGIEAVED------YARWVAPREVNFRIGDYGAGNPGIEGLYYG 265
Query: 291 GAD----VLLPLMQHSFPELGLVKEDCIEMSWIESIMYFAGFRGQSLDVLLNRTQPNVRF 346
+ PL+ + P G V ++WIES++ ++ F +D + QP V
Sbjct: 266 TPEQWRAAFQPLLD-TLPA-GYVVNPTTSLNWIESVLSYSNF--DHVDFIT--PQP-VEN 318
Query: 347 FKAKSDFVYDPMPEIAFQGIYERFYEKEAEAAEMI----LSPYGGVMNQ---ISDSATPF 399
F AKS + A + + +++ + + L +GG +Q ++++ T +
Sbjct: 319 FYAKS-LTLKSIKGDAVKNFVDYYFDVSNKVKDRFWFYQLDVHGGKNSQVTKVTNAETAY 377
Query: 400 PHRAGTRYKIQHIVYWEEEGSEASQRHIS--WIRRLYDYVAPYVSKNPRAAYLNYRDLDI 457
PHR K+ I +++ + + S ++ + V + K+ Y+NY D +
Sbjct: 378 PHRD----KLWLIQFYDRYDNNQTYPETSFKFLDGWVNSVTKALPKSDWGMYINYADPRM 433
Query: 458 GTNNKGYTSYKQASIWGLKYFKNNFKRLVDVKTMVDPGNFFRNEQSIPPL 507
++ Y + Y+ N RL +K DP + F Q++ P+
Sbjct: 434 ---DRDYAT--------KVYYGENLARLQKLKAKFDPTDRFYYPQAVRPV 472
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
Length = 521
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 118/490 (24%), Positives = 197/490 (40%), Gaps = 61/490 (12%)
Query: 53 KPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSS 112
+P V+ V AV + G ++ VRSGGH +EG +V + V +ID +
Sbjct: 55 RPDVVYVVHTADQVVDAVNQAMAAGQRIAVRSGGHCFEG--FVDDPAV-RAVIDMSQMRQ 111
Query: 113 VSVDPEAKTAWVQAGATNGKVYHTIAEKSKTLAFPAGVCPTXXXXXXXXXXXXXXXMRKY 172
V D + V+ GAT G+ Y + + PAGVCP R+
Sbjct: 112 VFYDSGKRAFAVEPGATLGETYRAL-YLDWGVTIPAGVCPQVGVGGHVLGGGYGPLSRRD 170
Query: 173 GLAADNV--VDAHLIDVNGRLLDRKSMG--------EDLFWAIRGGGGASFGVIIAWKIK 222
G+ AD++ V+ ++D +GR RK + +L+WA GGGG +FG++ + +
Sbjct: 171 GVVADHLYAVEVVVVDASGRA--RKVVATSAADDPNRELWWAHTGGGGGNFGIVTRYWFR 228
Query: 223 LV----TVPEIVTAFTVNRTLEQNATKIVDRWQHVADNLDEDLYIRVFLRSA--NSSTQG 276
T P + TL T W A L E+ + R+ + S
Sbjct: 229 TPGATGTDPSQLLPKAPTSTLRHIVT-----WDWSA--LTEEAFTRIIDNHGAWHQSNSA 281
Query: 277 KKTIRASFESLFLGGADVLLPLMQHSFPELGLVKEDCIEMSWIESIMYFAGFRGQSLDVL 336
T AS S+F + ++ + GL + + ++ ++ G ++
Sbjct: 282 AGTPYASMHSVFYLNSRAAGQILLDIQIDGGLDGAEALLNDFVAAVN-----EGTGVEPA 336
Query: 337 LNR-TQPNVR-----------FFKAKSDFVYDPMPEIAFQG--IYERFYEKEAEAAEMIL 382
+ R T+P +R F + KS Y P A Q +Y E+ L
Sbjct: 337 VQRSTEPWLRATLANKFDTGGFDRTKSKGAYLRKPWTAAQAATLYRHLSADSQVWGEVSL 396
Query: 383 SPYGGVMNQISDSATPFPHRAGTRYKIQHIVYWEEEGSEASQRHISWIRRLYDYV----- 437
YGG +N + ++AT R K+ W + + + +++WIR +Y +
Sbjct: 397 YSYGGKVNSVPETATATAQRDSI-IKVWMSATWMDPAHDDA--NLAWIREIYREIFATTG 453
Query: 438 -APYVSKNPRAAYLNYRDLDIGTNNKGYTSYKQASIWGLKYFKNNFKRLVDVKTMVDPGN 496
P ++NY D+D+ + + TS W Y+K N+ RL VK DP +
Sbjct: 454 GVPVPDDRTEGTFINYPDVDL-VDERWNTS---GVPWYTLYYKGNYPRLQKVKARWDPRD 509
Query: 497 FFRNEQSIPP 506
FR+ S+ P
Sbjct: 510 VFRHALSVRP 519
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDW|B Chain B, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|A Chain A, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|B Chain B, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|C Chain C, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|D Chain D, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
Length = 523
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 120/488 (24%), Positives = 195/488 (39%), Gaps = 79/488 (16%)
Query: 65 HVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTAWV 124
V AV+ + + G +V VRSGGH +E +V N V VIID L+ ++ DP +
Sbjct: 69 QVADAVEETVRTGKRVAVRSGGHCFE--DFVDNPDV-KVIIDMSLLTEIAYDPSMNAFLI 125
Query: 125 QAGATNGKVYHTIAEKSKTLAFPAGVCPTXXXXXXXXXXXXXXXMRKYGLAADNVVDAHL 184
+ G T +VY + + P GVC R++G D + +
Sbjct: 126 EPGNTLSEVYEKLY-LGWNVTIPGGVCGGVGVGGHICGGGYGPLSRQFGSVVDYLYAVEV 184
Query: 185 IDVN----GRLL----DRKSMGEDLFWAIRGGGGASFGVIIAWKIKLVTVPEIVTAFTVN 236
+ VN R++ +R DL+WA GGGG +FGV+ + ++ VPE V
Sbjct: 185 VVVNKQGKARVIVATRERDDPHHDLWWAHTGGGGGNFGVVTKYWMR---VPEDVGRNPER 241
Query: 237 RTLEQNATKIVDRWQHVADNLDEDLYIRVFLRSANSSTQGKKTIRASFESLF-------- 288
+ AT + + E + R LR+ + + + L+
Sbjct: 242 LLPKPPATLLTSTVTFDWAGMTEAAFSR-LLRNHGEWYERNSGPDSPYTGLWSQLMIGNE 300
Query: 289 ---LGGADVLLPL-MQHSFPELGLVKE----------------DCIEMSWIESIMYFAGF 328
+G + ++P+ + + P+ + + + IE W+ S G
Sbjct: 301 VPGMGESGFMMPIQVDATRPDARRLLDAHIEAVIDGVPPAEVPEPIEQRWLASTPGRGG- 359
Query: 329 RGQSLDVLLNRTQPNVRFFKAKSDFVYDPMPEIAFQGIYERFYEKEA-EAAEMILSPYGG 387
RG + K K+ ++ + + Q +YE + + + L YGG
Sbjct: 360 RGPA--------------SKTKAGYLRKRLTDRQIQAVYENMTHMDGIDYGAVWLIGYGG 405
Query: 388 VMNQISDSATPFPHRAGTRYKIQHIVYWEEEGSEASQRHISWIRRLYDYV------APYV 441
+N + +AT P R K+ +I W G+EA +H++W+R+LY V P
Sbjct: 406 KVNTVDPAATALPQRDAI-LKVNYITGWANPGNEA--KHLTWVRKLYADVYAETGGVPVP 462
Query: 442 SKNPRAAYLNYRDLDI---GTNNKGYTSYKQASIWGLKYFKNNFKRLVDVKTMVDPGNFF 498
+ AY+NY D D+ G N G W Y+K N RL VK DP N F
Sbjct: 463 NDVSDGAYINYPDSDLADPGLNTSGVP-------WHDLYYKGNHPRLRKVKAAYDPRNHF 515
Query: 499 RNEQSIPP 506
+ SI P
Sbjct: 516 HHALSIRP 523
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 114/481 (23%), Positives = 182/481 (37%), Gaps = 83/481 (17%)
Query: 53 KPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSS 112
+P +I + V +V+ + GL++ VRSGGH+ G Y +N +++D ++S
Sbjct: 38 RPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNG--YATNDG--GIVLDLRLMNS 93
Query: 113 VSVDPEAKTAWVQAGATNGKVYHTIAEKSK-TLAFPAGVCPTXXXXXXXXXXXXXXXMRK 171
+ +D A + G +G + + E +K LA G+ P K
Sbjct: 94 IHIDTAGSRARIGGGVISGDL---VKEAAKFGLAAVTGMHPKVGFCGLALNGGVGFLTPK 150
Query: 172 YGLAADNVVDAHLIDVNGRLL----DRKSMGEDLFWAIRGGGGASFGVIIAWKIKLVTVP 227
YGLA+DN++ A L+ G ++ D + +LFWA+R G G +FGV+ +++L +P
Sbjct: 151 YGLASDNILGATLVTATGDVIYCSDDERP---ELFWAVR-GAGPNFGVVTEVEVQLYELP 206
Query: 228 EIVTAFTVN-----RTLEQNATKIVDRWQHVADNLDEDLYIRVFLRSANSSTQGKKTIRA 282
+ A + L T ++D +AD++ +++ V A S T
Sbjct: 207 RKMLAGFITWAPSVSELAGLLTSLLDALNEMADHIYPSVFVGVDENRAPSVTVCVG---- 262
Query: 283 SFESLFLGGADVLLPLMQHSFPELGLVKEDCIEMSWIESIMYFAGFRGQSLDVLLNR--- 339
LGG D+ + LG D I + + ++ G D + N
Sbjct: 263 -----HLGGLDIAERDIAR-LRGLGRTVSDSIAVRSYDEVVALNAEVGSFEDGMSNLWID 316
Query: 340 ---TQPNVRFFKAKSDFVYDPMPEIAFQGIYERFYEKEAEAAEMILSPYGGVMNQISDSA 396
PN RF + A G ++F + A + L G
Sbjct: 317 REIAMPNARFAE-------------AIAGNLDKFVSEPASGGSVKLEIEG---------- 353
Query: 397 TPF--PHRAGTRYKIQHIVYWEEEGSEASQRHISWIRRLYDYVAPYVSKNPRAAY-LNYR 453
PF P R R++ V E S A AP K P A L+
Sbjct: 354 MPFGNPKRTPARHRDAMGVLALAEWSGA---------------APGSEKYPELARELDAA 398
Query: 454 DLDIGTNNKGY-----TSYKQASIWGLKYFKNNFKRLVDVKTMVDPGNFFRNEQSIPPLS 508
L G G+ S A + Y + RL VK DP N FR+ +I P
Sbjct: 399 LLRAGVTTSGFGLLNNNSEVTAEMVAEVYKPEVYSRLAAVKREYDPENRFRHNYNIDPEG 458
Query: 509 S 509
S
Sbjct: 459 S 459
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 98/488 (20%), Positives = 190/488 (38%), Gaps = 73/488 (14%)
Query: 54 PQVIVTPVKESHVQAAVKCSQKYGLQVRVRS----------GGHDYEGLSYVSNYHVPFV 103
P I P + AAV+C G+Q+ + GG D +
Sbjct: 43 PAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGED------------GHL 90
Query: 104 IIDFINLSSVSVDPEAKTAWVQAGATNGKVYHTIAEKSKTLAFPAGVCPTXXXXXXXXXX 163
+++ + VSVD + A +Q GA G + ++ A G CP
Sbjct: 91 MLELDRMYRVSVD-DNNVATIQGGARLGYTALELLDQGNR-ALSHGTCPAVGVGGHVLGG 148
Query: 164 XXXXXMRKYGLAADNVVDAHLIDVNGRLLD-RKSMGEDLFWAIRGGGGASFGVIIAWKIK 222
+GL D ++ A ++ + ++ ++ DLFWA+RGGGG F ++ ++
Sbjct: 149 GYGFATHTHGLTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGG-FAIVSEFEFN 207
Query: 223 LVTVPEIVTAFTV----NRTLEQNATKIVDRWQHVADNLDEDLYIRVFLRSANSSTQGKK 278
PEI+T + V NR K + W + + +L +R+ + +AN+
Sbjct: 208 TFEAPEIITTYQVTTTWNRKQHVAGLKALQDWAQ--NTMPRELSMRLEI-NANA------ 258
Query: 279 TIRASFESLFLGGA----DVLLPLMQHSFPELGLVKEDCIEMSWIESIMYFAGFRGQSLD 334
++E F G A +L P+M+ + + + K +E W I + G L+
Sbjct: 259 ---LNWEGNFFGNAKDLKKILQPIMKKAGGKSTISK--LVETDWYGQINTY--LYGADLN 311
Query: 335 VLLNRTQPNVRFFKAKSDFVYDPMPEIAFQGIYERFYE----KEAEAAEMILSPYGG--- 387
+ N +F A S + + A Q + ++ + + +GG
Sbjct: 312 ITYNYDVH--EYFYANS-LTAPRLSDEAIQAFVDYKFDNSSVRPGRGWWIQWDFHGGKNS 368
Query: 388 VMNQISDSATPFPHRAGT-RYKIQHIVY-WEEEGSEASQRHISWIRRLYDYVAPYVSKNP 445
+ +S+ T + HR ++ +Y +E S + +++ + + ++
Sbjct: 369 ALAAVSNDETAYAHRDQLWLWQFYDSIYDYENNTSPYPESGFEFMQGFVATIEDTLPEDR 428
Query: 446 RAAYLNYRDLDIGTNNKGYTSYKQASIWGLKYFKNNFKRLVDVKTMVDPGNFFRNEQSIP 505
+ Y NY D T+ + L Y++ N ++L +K DP + F N S+
Sbjct: 429 KGKYFNYAD----------TTLTKEEAQKL-YWRGNLEKLQAIKAKYDPEDVFGNVVSVE 477
Query: 506 PLSSRKKK 513
P++ ++K
Sbjct: 478 PIAYLEQK 485
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|B Chain B, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|C Chain C, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|D Chain D, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3PQB|A Chain A, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|B Chain B, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|C Chain C, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|D Chain D, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
Length = 501
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 111/491 (22%), Positives = 186/491 (37%), Gaps = 64/491 (13%)
Query: 53 KPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSS 112
+P+ P V A+++ + G V RSGGH G +V V+ D NL +
Sbjct: 34 EPEEFFLPATPDDVVASLQKAVTEGRGVACRSGGHC--GQDFVGTPRRDLVL-DLHNLHA 90
Query: 113 VSVDPEAKTAWVQAGATNGKVYHTIAEKSKTLAFPAGVCPTXXXXXXXXXXXXXXXMRKY 172
+ + V +GAT +V + + A P G C R+
Sbjct: 91 IGPAADGAGVRVGSGATVDQVQKALFRRWNA-ALPLGACSAVGMGGLVAGGGYGPLSRQL 149
Query: 173 GLAADNV--VDAHLID-------VNGRLLDRKSMGEDLFWAIRGGGGASFGVIIAWKIK- 222
GL D++ V+ ++D V R D +GE LFWA GGGG +FGV+ A++ +
Sbjct: 150 GLVVDHLHAVEVAVVDESRTVRLVTARADDTGDLGE-LFWAHTGGGGGNFGVVTAYEFRS 208
Query: 223 ---LVTVPEIVTAFTVNRTLEQNATKIVDRWQHVADNLDEDLYIRVFLRSANSSTQGKKT 279
L T P + R Q K+V W + D +R F ++
Sbjct: 209 PEHLATEP-VGLPRAAGRLHVQ---KVVFPWAMI-DETSFVTVMRRFFEWHERHSEPGSP 263
Query: 280 IRASFESLFLG--GADVLLPLMQHSF---PELGLVKEDCIE---------------MSWI 319
+ F + F+ + VL ++Q PE ++ MSW+
Sbjct: 264 ESSLFATFFVNHVSSGVLQLMVQQDADVDPEGEILARFVASLTEGTGVVGIPRGGVMSWL 323
Query: 320 ESIMYFAGFRGQSLDVLLNRTQPNVRFFKAKSDFVYDPMPEIAFQGIYERFYEKEAEAAE 379
Y + + DV+ R+ + +A D + + ++ + +A+
Sbjct: 324 TGTRYMS--QADCGDVMGARSASKSAYHRAAPT---DEQLSVLHRHLHA---DHPGQASY 375
Query: 380 MILSPYGGVMNQISDSATPFPHRAGTRYKIQHIVYWEEEGSEASQRHISWIRRLYD---- 435
++ + YGG +N+ S P R K W++ +E + H+ W+R LY+
Sbjct: 376 VMFNSYGGEINRRGPSDAAVPQRDSV-VKSSWFSAWQD--AELDELHLGWLRGLYEEFFA 432
Query: 436 --YVAPYVSKNPRAAYLNYRDLDIGTNNKGYTSYKQASIWGLKYFKNNFKRLVDVKTMVD 493
P Y+NY D D+ + + W Y+K+N+ RL K D
Sbjct: 433 GTGGVPVTGGRTDGCYINYPDADLLDPARN----RSGEPWHHLYYKDNYARLRSAKRAWD 488
Query: 494 PGNFFRNEQSI 504
P N F + SI
Sbjct: 489 PLNTFHHSMSI 499
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 96/488 (19%), Positives = 189/488 (38%), Gaps = 73/488 (14%)
Query: 54 PQVIVTPVKESHVQAAVKCSQKYGLQVRVRS----------GGHDYEGLSYVSNYHVPFV 103
P I P + AAV+C G+Q+ + GG D +
Sbjct: 43 PAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGED------------GHL 90
Query: 104 IIDFINLSSVSVDPEAKTAWVQAGATNGKVYHTIAEKSKTLAFPAGVCPTXXXXXXXXXX 163
+++ + VSVD + A +Q GA G + ++ A G P
Sbjct: 91 MLELDRMYRVSVD-DNNVATIQGGARLGYTALELLDQGNR-ALSHGTAPAVGVGGHVLGG 148
Query: 164 XXXXXMRKYGLAADNVVDAHLIDVNGRLLD-RKSMGEDLFWAIRGGGGASFGVIIAWKIK 222
+GL D ++ A ++ + ++ ++ DLFWA+RGGGG F ++ ++
Sbjct: 149 GYGFATHTHGLTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGG-FAIVSEFEFN 207
Query: 223 LVTVPEIVTAFTV----NRTLEQNATKIVDRWQHVADNLDEDLYIRVFLRSANSSTQGKK 278
PEI+T + V NR K + W + + +L +R+ + +AN+
Sbjct: 208 TFEAPEIITTYQVTTTWNRKQHVAGLKALQDWAQ--NTMPRELSMRLEI-NANA------ 258
Query: 279 TIRASFESLFLGGA----DVLLPLMQHSFPELGLVKEDCIEMSWIESIMYFAGFRGQSLD 334
++E F G A +L P+M+ + + + K +E W I + G L+
Sbjct: 259 ---LNWEGNFFGNAKDLKKILQPIMKKAGGKSTISK--LVETDWYGQINTY--LYGADLN 311
Query: 335 VLLNRTQPNVRFFKAKSDFVYDPMPEIAFQGIYERFYE----KEAEAAEMILSPYGG--- 387
+ N +F A S + + A Q + ++ + + +GG
Sbjct: 312 ITYNYDVH--EYFYANS-LTAPRLSDEAIQAFVDYKFDNSSVRPGRGWWIQWDFHGGKNS 368
Query: 388 VMNQISDSATPFPHRAGT-RYKIQHIVY-WEEEGSEASQRHISWIRRLYDYVAPYVSKNP 445
+ +S+ T + HR ++ +Y +E S + +++ + + ++
Sbjct: 369 ALAAVSNDETAYAHRDQLWLWQFYDSIYDYENNTSPYPESGFEFMQGFVATIEDTLPEDR 428
Query: 446 RAAYLNYRDLDIGTNNKGYTSYKQASIWGLKYFKNNFKRLVDVKTMVDPGNFFRNEQSIP 505
+ Y NY D + T + + Y++ N ++L +K DP + F N S+
Sbjct: 429 KGKYFNYADTTL-------TKEEAQKL----YWRGNLEKLQAIKAKYDPEDVFGNVVSVE 477
Query: 506 PLSSRKKK 513
P++ ++K
Sbjct: 478 PIAYLEQK 485
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y08|B Chain B, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y3R|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|C Chain C, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|D Chain D, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3S|A Chain A, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y3S|B Chain B, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y4G|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
pdb|2Y4G|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
Length = 530
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 76/171 (44%), Gaps = 16/171 (9%)
Query: 42 QNLRFSTPTTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVP 101
+NLRF P+ I + ++ + + + G +V VRSGGH YE +V+N V
Sbjct: 51 ENLRF----VGDPEEIHLVGSAAEIEQVLSRAVRSGKRVAVRSGGHCYE--DFVANSDV- 103
Query: 102 FVIIDFINLSSVSVDPEAKTAWVQAGATNGKVYHTIAEKSKTLAFPAGVCPTXXXXXXXX 161
V++D LS+V D E V+AGAT G VY T+ + + P G CP
Sbjct: 104 RVVMDMSRLSAVGFDEERGAFAVEAGATLGAVYKTLF-RVWGVTLPGGACPDVGAGGHIL 162
Query: 162 XXXXXXXMRKYGLAAD--NVVDAHLIDVNGRLLDRKSMGE------DLFWA 204
R +G D + V+ ++D +G + E DL+WA
Sbjct: 163 GGGYGPLSRMHGSIVDYLHAVEVVVVDASGDARTVIATREPSDPNHDLWWA 213
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 15/138 (10%)
Query: 377 AAEMILSPYGGVMNQISDSATPFPHRAGTRYKIQHIVYWEEEGSEASQRHISWIRRLYDY 436
A + L YGG +N + T R KI ++ WE+ + H+ WIR LY
Sbjct: 399 AGVVALIAYGGKVNAVPADRTAVAQRDSI-LKIVYVTTWEDPAQDPV--HVRWIRELYRD 455
Query: 437 V------APYVSKNPRAAYLNYRDLDIGTNNKGYTSYKQASIWGLKYFKNNFKRLVDVKT 490
V P AY+NY D+D+ + W Y+K+ + RL VK
Sbjct: 456 VYADTGGVPVPGGAADGAYVNYPDVDLADEEWNTSGVP----WSELYYKDAYPRLQAVKA 511
Query: 491 MVDPGNFFRNEQS--IPP 506
DP N FR+ S +PP
Sbjct: 512 RWDPRNVFRHALSVRVPP 529
>pdb|1WVE|A Chain A, P-Cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
pdb|1WVE|B Chain B, P-Cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
pdb|1WVF|A Chain A, P-cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
Length = 520
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 54 PQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSV 113
P VT VQ VK ++ + + S G ++ G + VI+D ++ +
Sbjct: 57 PSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNF-GYGSAAPVQRGQVILDLKKMNKI 115
Query: 114 -SVDPEAKTAWVQAGATNGKVYHTIAEKS 141
+DPE A V+ G T G++Y I E +
Sbjct: 116 IKIDPEMCYALVEPGVTFGQMYDYIQENN 144
>pdb|1DII|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DII|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DIQ|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
pdb|1DIQ|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
Length = 521
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 54 PQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSV 113
P VT VQ VK ++ + + S G ++ G + VI+D ++ +
Sbjct: 58 PSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNF-GYGSAAPVQRGQVILDLKKMNKI 116
Query: 114 -SVDPEAKTAWVQAGATNGKVYHTIAEKS 141
+DPE A V+ G T G++Y I E +
Sbjct: 117 IKIDPEMCYALVEPGVTFGQMYDYIQENN 145
>pdb|2QS0|A Chain A, Quinolinate Synthase From Pyrococcus Furiosus
Length = 323
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 307 GLVKEDCIEMSWIESIMYFAGFRGQSLDVLLNRTQPNVRFFKAKSDFVYDPMPEIAFQGI 366
G+++ C W E ++ F + + L++ PN +F+ AK D V M I Q +
Sbjct: 239 GMIRRAC---EWDEWVV----FTEREMVYRLSKLYPNKKFYPAKEDAVCVGMKAITLQHV 291
Query: 367 YERFYEKEAE 376
YE + + E
Sbjct: 292 YESLRDMKYE 301
>pdb|1Y0E|A Chain A, Crystal Structure Of Putative Mannac-6-P Epimerase From
Staphylococcus Aureus (Strain N315)
pdb|1Y0E|B Chain B, Crystal Structure Of Putative Mannac-6-P Epimerase From
Staphylococcus Aureus (Strain N315)
Length = 223
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 457 IGTNNKGYTSYKQASIWGLKYFKNNFKRLVDVKTMVD 493
IGT GYTSY Q + ++N+F+ L DV VD
Sbjct: 143 IGTTLHGYTSYTQGQLL----YQNDFQFLKDVLQSVD 175
>pdb|2ZUS|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase
pdb|2ZUS|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase
pdb|2ZUS|C Chain C, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase
pdb|2ZUS|D Chain D, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase
pdb|2ZUT|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Galnac
pdb|2ZUT|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Galnac
pdb|2ZUT|C Chain C, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Galnac
pdb|2ZUT|D Chain D, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Galnac
pdb|2ZUU|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac
pdb|2ZUU|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac
pdb|2ZUU|C Chain C, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac
pdb|2ZUU|D Chain D, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac
pdb|2ZUV|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac, Ethylene Glycol,
And Nitrate
pdb|2ZUV|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac, Ethylene Glycol,
And Nitrate
pdb|2ZUW|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac And Sulfate
pdb|2ZUW|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac And Sulfate
pdb|2ZUW|C Chain C, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac And Sulfate
pdb|2ZUW|D Chain D, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac And Sulfate
Length = 759
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 89 YEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTAWVQAG 127
Y+ LS V Y P V FI + V VDP A+ AW QAG
Sbjct: 570 YQTLS-VDKYFPPVVPDHFIT-ADVPVDPAAREAWEQAG 606
>pdb|4DHK|A Chain A, Crystal Structure Of A Deoxycytidine Triphosphate
Deaminase (Dctp Deaminase) From Burkholderia
Thailandensis
pdb|4DHK|B Chain B, Crystal Structure Of A Deoxycytidine Triphosphate
Deaminase (Dctp Deaminase) From Burkholderia
Thailandensis
Length = 191
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 429 WIRRL---YDYVAPYVSKNPRAAYLNYRDLDIGTNNKGYTSYKQASIWGLKYFKNNFKRL 485
WIRR+ + + P+V RAA R + GT++ GY K F N +
Sbjct: 10 WIRRMAEEHKMIEPFVPDQVRAAEDGRRIVSYGTSSYGYDIRCADE---FKIFTNINSTI 66
Query: 486 VDVKTMVDPGNF--FRNEQSIPPLSS 509
VD K D G+F F+ + I P +S
Sbjct: 67 VDPKNF-DEGSFVDFKGDVCIIPPNS 91
>pdb|1SMN|A Chain A, Identification Of The Serratia Endonuclease Dimer:
Structural Basis And Implications For Catalysis
pdb|1SMN|B Chain B, Identification Of The Serratia Endonuclease Dimer:
Structural Basis And Implications For Catalysis
pdb|1QAE|A Chain A, The Active Site Of Serratia Endonuclease Contains A
Conserved Magnesium-Water Cluster
pdb|1QAE|B Chain B, The Active Site Of Serratia Endonuclease Contains A
Conserved Magnesium-Water Cluster
pdb|1G8T|A Chain A, Sm Endonuclease From Seratia Marcenscens At 1.1 A
Resolution
pdb|1G8T|B Chain B, Sm Endonuclease From Seratia Marcenscens At 1.1 A
Resolution
Length = 245
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 20 SISKLIYTRTNSSFSSILDFSIQNLRFSTPTTPK-----------PQVIVTPVKESHVQA 68
SI + YT N+S + ++ ++ TP + K P + P + A
Sbjct: 22 SIVRHAYTLNNNSTTKFANWVAYHITKDTPASGKTRNWKTDPALNPADTLAPADYTGANA 81
Query: 69 AVKCSQKYGLQVRVRSGGHDYEGLSYVSN 97
A+K + + + +G D+E L+Y+SN
Sbjct: 82 ALKVDRGHQAPLASLAGVSDWESLNYLSN 110
>pdb|1QL0|A Chain A, Sm Endonuclease From Seratia Marcenscens At Atomic
Resolution
pdb|1QL0|B Chain B, Sm Endonuclease From Seratia Marcenscens At Atomic
Resolution
Length = 241
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 20 SISKLIYTRTNSSFSSILDFSIQNLRFSTPTTPK-----------PQVIVTPVKESHVQA 68
SI + YT N+S + ++ ++ TP + K P + P + A
Sbjct: 18 SIVRHAYTLNNNSTTKFANWVAYHITKDTPASGKTRNWKTDPALNPADTLAPADYTGANA 77
Query: 69 AVKCSQKYGLQVRVRSGGHDYEGLSYVSN 97
A+K + + + +G D+E L+Y+SN
Sbjct: 78 ALKVDRGHQAPLASLAGVSDWESLNYLSN 106
>pdb|3HYV|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYX|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
Length = 430
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 85 GGHDYEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTAWVQAGATNGKVYHTIAEKSKTL 144
G +E +S +P I+FIN + S+DP+A T Q+G Y IA K +
Sbjct: 51 GWRKFEDISVPLAPLLPKFNIEFINEKAESIDPDANTVTTQSGKKIEYDYLVIATGPKLV 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,570,347
Number of Sequences: 62578
Number of extensions: 645706
Number of successful extensions: 1547
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1433
Number of HSP's gapped (non-prelim): 36
length of query: 515
length of database: 14,973,337
effective HSP length: 103
effective length of query: 412
effective length of database: 8,527,803
effective search space: 3513454836
effective search space used: 3513454836
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)