Query 048392
Match_columns 515
No_of_seqs 263 out of 2281
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 09:06:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048392.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048392hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 100.0 2E-39 4.4E-44 339.8 41.6 190 45-241 56-256 (525)
2 PLN02805 D-lactate dehydrogena 100.0 4.3E-36 9.4E-41 319.5 29.1 192 52-249 132-330 (555)
3 TIGR01678 FAD_lactone_ox sugar 100.0 1.1E-33 2.4E-38 294.8 35.5 195 46-254 7-204 (438)
4 PRK11230 glycolate oxidase sub 100.0 9E-34 1.9E-38 300.3 31.3 196 50-249 52-253 (499)
5 TIGR01677 pln_FAD_oxido plant- 100.0 2.6E-32 5.6E-37 289.9 34.3 180 46-229 24-214 (557)
6 COG0277 GlcD FAD/FMN-containin 100.0 1.2E-32 2.7E-37 292.6 29.2 185 50-239 28-219 (459)
7 TIGR01679 bact_FAD_ox FAD-link 100.0 5.6E-32 1.2E-36 281.8 32.5 172 46-229 4-178 (419)
8 TIGR01676 GLDHase galactonolac 100.0 2.9E-32 6.2E-37 285.5 22.9 176 45-229 53-231 (541)
9 KOG1231 Proteins containing th 100.0 2.4E-30 5.3E-35 255.5 22.7 178 46-228 56-240 (505)
10 TIGR00387 glcD glycolate oxida 100.0 1.9E-30 4.2E-35 270.6 20.5 188 57-250 1-197 (413)
11 PRK11282 glcE glycolate oxidas 100.0 5.7E-30 1.2E-34 257.8 20.4 170 62-238 3-181 (352)
12 PLN02465 L-galactono-1,4-lacto 100.0 1.9E-28 4.1E-33 258.9 24.1 176 45-229 88-266 (573)
13 PF01565 FAD_binding_4: FAD bi 99.9 5.6E-27 1.2E-31 208.1 14.2 136 54-193 1-137 (139)
14 PRK11183 D-lactate dehydrogena 99.9 8.7E-25 1.9E-29 225.7 17.3 197 51-251 36-290 (564)
15 PRK13905 murB UDP-N-acetylenol 99.9 5.1E-25 1.1E-29 219.4 12.9 164 50-227 27-193 (298)
16 KOG4730 D-arabinono-1, 4-lacto 99.9 8.4E-23 1.8E-27 202.3 17.2 183 46-236 42-227 (518)
17 PRK14652 UDP-N-acetylenolpyruv 99.9 3E-22 6.4E-27 198.7 14.1 163 50-227 32-196 (302)
18 TIGR00179 murB UDP-N-acetyleno 99.9 3E-22 6.5E-27 197.5 13.2 163 50-225 9-174 (284)
19 PRK12436 UDP-N-acetylenolpyruv 99.9 3.1E-22 6.6E-27 199.1 13.1 163 50-226 33-197 (305)
20 KOG1232 Proteins containing th 99.9 2.7E-22 5.7E-27 194.0 12.1 212 1-232 53-271 (511)
21 PRK13906 murB UDP-N-acetylenol 99.9 7.6E-22 1.6E-26 196.3 13.0 162 51-226 34-197 (307)
22 PRK13903 murB UDP-N-acetylenol 99.9 3.1E-21 6.7E-26 194.6 15.4 165 50-227 29-197 (363)
23 PRK14649 UDP-N-acetylenolpyruv 99.8 8.4E-20 1.8E-24 180.8 16.3 165 50-226 17-192 (295)
24 KOG1233 Alkyl-dihydroxyacetone 99.8 1.1E-19 2.4E-24 176.2 15.2 189 46-239 153-352 (613)
25 PRK14653 UDP-N-acetylenolpyruv 99.8 2.4E-18 5.1E-23 169.8 13.2 162 50-227 30-194 (297)
26 COG0812 MurB UDP-N-acetylmuram 99.7 2.6E-17 5.6E-22 159.1 13.7 169 46-226 12-183 (291)
27 PRK14650 UDP-N-acetylenolpyruv 99.7 3.5E-17 7.6E-22 160.9 12.2 164 50-227 29-195 (302)
28 PRK00046 murB UDP-N-acetylenol 99.7 4E-17 8.7E-22 162.9 11.4 163 50-226 17-188 (334)
29 PF08031 BBE: Berberine and be 99.7 1.9E-17 4.2E-22 116.7 2.9 47 448-505 1-47 (47)
30 PRK14648 UDP-N-acetylenolpyruv 99.7 4E-16 8.7E-21 155.4 12.7 166 50-227 26-237 (354)
31 PRK14651 UDP-N-acetylenolpyruv 99.5 3E-14 6.6E-19 138.2 11.7 150 52-226 19-170 (273)
32 KOG1262 FAD-binding protein DI 99.5 3.7E-14 8.1E-19 138.3 7.1 127 103-231 104-233 (543)
33 PRK13904 murB UDP-N-acetylenol 99.3 1.5E-11 3.1E-16 118.4 9.5 145 50-227 15-160 (257)
34 PRK09799 putative oxidoreducta 96.1 0.02 4.4E-07 56.0 7.9 139 56-222 4-155 (258)
35 PF00941 FAD_binding_5: FAD bi 96.0 0.0029 6.4E-08 57.9 1.6 104 54-164 2-116 (171)
36 TIGR03312 Se_sel_red_FAD proba 95.4 0.045 9.8E-07 53.5 7.1 100 57-164 4-110 (257)
37 PF09265 Cytokin-bind: Cytokin 95.3 0.09 2E-06 51.6 8.9 34 471-505 248-281 (281)
38 PLN00107 FAD-dependent oxidore 94.1 0.11 2.3E-06 50.0 6.0 47 437-501 151-197 (257)
39 TIGR02963 xanthine_xdhA xanthi 92.3 0.36 7.7E-06 51.5 7.1 153 53-223 191-358 (467)
40 TIGR03195 4hydrxCoA_B 4-hydrox 90.5 0.46 9.9E-06 47.9 5.5 101 56-163 6-117 (321)
41 PRK09971 xanthine dehydrogenas 90.2 0.45 9.8E-06 47.4 5.2 103 56-164 6-119 (291)
42 PF02913 FAD-oxidase_C: FAD li 89.8 0.58 1.3E-05 44.8 5.5 109 357-500 134-245 (248)
43 PF04030 ALO: D-arabinono-1,4- 88.6 0.34 7.4E-06 47.4 2.9 58 426-501 197-254 (259)
44 TIGR03199 pucC xanthine dehydr 87.8 0.72 1.6E-05 45.3 4.6 97 60-163 1-109 (264)
45 PLN00192 aldehyde oxidase 83.3 2.6 5.7E-05 50.9 7.2 107 54-163 233-352 (1344)
46 PLN02906 xanthine dehydrogenas 83.1 1.7 3.7E-05 52.3 5.5 79 55-139 229-309 (1319)
47 COG4630 XdhA Xanthine dehydrog 82.8 2.8 6.1E-05 42.4 5.9 141 53-206 202-352 (493)
48 TIGR00387 glcD glycolate oxida 80.0 2.5 5.4E-05 44.4 4.8 30 471-500 381-411 (413)
49 TIGR02969 mam_aldehyde_ox alde 79.8 4.1 9E-05 49.2 7.2 78 55-138 237-316 (1330)
50 COG1319 CoxM Aerobic-type carb 73.7 10 0.00022 37.6 6.8 75 54-134 3-80 (284)
51 COG0351 ThiD Hydroxymethylpyri 65.2 25 0.00053 34.4 7.3 93 22-140 132-224 (263)
52 COG4981 Enoyl reductase domain 60.5 17 0.00036 38.8 5.5 68 7-82 113-181 (717)
53 COG1519 KdtA 3-deoxy-D-manno-o 46.5 1.2E+02 0.0025 31.8 9.0 35 52-86 259-293 (419)
54 PF02601 Exonuc_VII_L: Exonucl 46.4 29 0.00064 34.9 4.7 59 22-87 17-87 (319)
55 PF03614 Flag1_repress: Repres 45.9 40 0.00087 29.6 4.6 39 57-95 9-48 (165)
56 PLN02465 L-galactono-1,4-lacto 45.1 1.8E+02 0.0038 32.0 10.6 27 472-501 538-564 (573)
57 KOG4730 D-arabinono-1, 4-lacto 45.1 11 0.00025 39.1 1.5 20 480-499 485-504 (518)
58 PRK11282 glcE glycolate oxidas 40.4 17 0.00036 37.4 1.8 21 480-500 324-345 (352)
59 PRK00286 xseA exodeoxyribonucl 39.9 36 0.00077 36.1 4.3 77 4-87 110-204 (438)
60 COG4359 Uncharacterized conser 35.8 40 0.00087 31.0 3.2 26 66-91 78-103 (220)
61 KOG3282 Uncharacterized conser 35.4 49 0.0011 30.2 3.7 36 45-82 118-153 (190)
62 TIGR00237 xseA exodeoxyribonuc 28.3 43 0.00094 35.4 2.6 77 4-87 104-199 (432)
63 cd07033 TPP_PYR_DXS_TK_like Py 27.6 89 0.0019 27.7 4.2 29 55-83 125-153 (156)
64 PF15608 PELOTA_1: PELOTA RNA 27.0 87 0.0019 25.8 3.6 52 23-86 37-89 (100)
65 TIGR01676 GLDHase galactonolac 24.9 42 0.00092 36.4 1.8 26 473-501 509-534 (541)
66 PRK04322 peptidyl-tRNA hydrola 24.6 1.6E+02 0.0036 24.7 5.0 38 51-88 45-83 (113)
67 COG1570 XseA Exonuclease VII, 23.8 53 0.0012 34.5 2.2 76 4-86 110-204 (440)
68 PF02779 Transket_pyr: Transke 23.6 1.2E+02 0.0026 27.5 4.4 32 55-86 139-172 (178)
69 PF10740 DUF2529: Protein of u 23.3 1.8E+02 0.0039 26.5 5.2 65 53-122 83-149 (172)
70 cd02429 PTH2_like Peptidyl-tRN 23.2 1.6E+02 0.0035 25.0 4.6 32 52-83 54-85 (116)
71 PF12108 SF3a60_bindingd: Spli 22.7 47 0.001 20.5 0.9 12 480-491 11-22 (28)
72 PF01981 PTH2: Peptidyl-tRNA h 22.5 1.7E+02 0.0037 24.6 4.8 39 51-89 48-87 (116)
73 PRK06186 hypothetical protein; 21.9 72 0.0016 30.5 2.6 27 61-87 66-92 (229)
74 cd05014 SIS_Kpsf KpsF-like pro 21.8 1.6E+02 0.0034 24.7 4.5 31 58-88 55-85 (128)
75 KOG4656 Copper chaperone for s 21.6 1.6E+02 0.0035 27.6 4.5 35 109-143 33-67 (247)
76 TIGR00178 monomer_idh isocitra 21.2 6.9E+02 0.015 27.5 9.7 133 63-206 312-460 (741)
77 COG1058 CinA Predicted nucleot 21.1 97 0.0021 30.2 3.3 62 18-89 11-72 (255)
78 cd06568 GH20_SpHex_like A subg 21.0 93 0.002 31.6 3.4 28 61-88 72-101 (329)
79 COG1154 Dxs Deoxyxylulose-5-ph 20.9 6.9E+02 0.015 27.6 9.8 78 53-137 440-520 (627)
80 TIGR00283 arch_pth2 peptidyl-t 20.7 2.1E+02 0.0046 24.1 4.9 38 51-88 47-85 (115)
81 KOG2499 Beta-N-acetylhexosamin 20.4 88 0.0019 33.2 3.0 28 61-88 247-276 (542)
82 cd02742 GH20_hexosaminidase Be 20.1 1E+02 0.0022 30.8 3.4 29 60-88 68-98 (303)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=2e-39 Score=339.76 Aligned_cols=190 Identities=23% Similarity=0.300 Sum_probs=169.8
Q ss_pred CCCCCCCCCccEEEecCCHHHHHHHHHHHH--hCCCeEEEEcCCCCCCCCCcccCCCCCEEEEEcCCCCc------E-EE
Q 048392 45 RFSTPTTPKPQVIVTPVKESHVQAAVKCSQ--KYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSS------V-SV 115 (515)
Q Consensus 45 r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~--~~~~~~~~~g~Gh~~~~~~~~~~~~~~gvvIdl~~l~~------v-~~ 115 (515)
.|+......|.+|++|+|++||+++|++|+ +++++|++||+|||+.|.+...+ |++|||++||+ + ++
T Consensus 56 d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~----GivIdms~Ln~i~~~~~ii~v 131 (525)
T PLN02441 56 DFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPG----GVVVDMRSLRGGVRGPPVIVV 131 (525)
T ss_pred CcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCC----eEEEECCCCCCcCccCceEEE
Confidence 488877889999999999999999999997 67999999999999998887655 89999999999 4 78
Q ss_pred cCCCCEEEEcCCCCHHHHHHHHHHhCCcceecC-CCCCcccchhhhhCCCCCCcccccccccceEeEEEEEecCCcEEe-
Q 048392 116 DPEAKTAWVQAGATNGKVYHTIAEKSKTLAFPA-GVCPTVGVGGLFSGGGYGFLMRKYGLAADNVVDAHLIDVNGRLLD- 193 (515)
Q Consensus 116 d~~~~~v~v~aG~~~~~l~~~l~~~g~~l~~~~-g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~- 193 (515)
|.+..+|+|++|++|.+|.+++.++| ++.+. +.+..++|||.++++|.|..+.+||..+|+|++++||+++|++++
T Consensus 132 d~~~~~VtV~aG~~~~dv~~~l~~~G--laP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~~ 209 (525)
T PLN02441 132 SGDGPYVDVSGGELWIDVLKATLKHG--LAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVTC 209 (525)
T ss_pred cCCCCEEEEcCCCCHHHHHHHHHHCC--CccCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEEe
Confidence 88999999999999999999999985 54333 566788999999999999999999999999999999999999997
Q ss_pred cCCCCcchhhhhhcccCCceeEEEEEEEEEEeeCceEEEEEEeecchh
Q 048392 194 RKSMGEDLFWAIRGGGGASFGVIIAWKIKLVTVPEIVTAFTVNRTLEQ 241 (515)
Q Consensus 194 ~~~~~~dL~~a~rg~~~g~~Givt~~~~~l~~~~~~~~~~~~~~~~~~ 241 (515)
+..+|+|||||++||+ |+|||||+++||++|.|+.+.++.+.+...+
T Consensus 210 s~~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~~v~~~~~~y~~~~ 256 (525)
T PLN02441 210 SPTQNSDLFFAVLGGL-GQFGIITRARIALEPAPKRVRWIRVLYSDFS 256 (525)
T ss_pred CCCCChhHHHhhccCC-CCcEEEEEEEEEEEecCCceEEEEEEcCCHH
Confidence 6678999999999987 8999999999999999997777666665433
No 2
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=4.3e-36 Score=319.47 Aligned_cols=192 Identities=24% Similarity=0.344 Sum_probs=170.6
Q ss_pred CCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCcccCCCCCEEEEEcCCCCcE-EEcCCCCEEEEcCCCCH
Q 048392 52 PKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSV-SVDPEAKTAWVQAGATN 130 (515)
Q Consensus 52 ~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~~~~~~~~~~~gvvIdl~~l~~v-~~d~~~~~v~v~aG~~~ 130 (515)
..|.+||+|+|++||+++|++|+++++|++++|||||+.|.+.... ++++|||++||+| ++|+++.+|+||||+++
T Consensus 132 ~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~~G~~~~~~---ggivIdl~~mn~I~~id~~~~~vtVeaGv~~ 208 (555)
T PLN02805 132 NIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAPH---GGVCIDMSLMKSVKALHVEDMDVVVEPGIGW 208 (555)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCccCCC---CEEEEEccCCCCeEEEeCCCCEEEEeCCcCH
Confidence 4799999999999999999999999999999999999998876543 4899999999998 79999999999999999
Q ss_pred HHHHHHHHHhCCcceecCCCCCcccchhhhhCCCCCCcccccccccceEeEEEEEecCCcEEec------CCCCcchhhh
Q 048392 131 GKVYHTIAEKSKTLAFPAGVCPTVGVGGLFSGGGYGFLMRKYGLAADNVVDAHLIDVNGRLLDR------KSMGEDLFWA 204 (515)
Q Consensus 131 ~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~~------~~~~~dL~~a 204 (515)
.+|.++|.++ |+.++...++.++|||.++++++|..+.+||.++|+|++++||++||++++. ...++||+|+
T Consensus 209 ~~L~~~L~~~--Gl~~p~~p~~~~TIGG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l 286 (555)
T PLN02805 209 LELNEYLEPY--GLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRL 286 (555)
T ss_pred HHHHHHHHHc--CCEeCCCCccccChhhHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHH
Confidence 9999999998 4677777777889999999999999999999999999999999999999951 1246899999
Q ss_pred hhcccCCceeEEEEEEEEEEeeCceEEEEEEeecchhHHHHHHHH
Q 048392 205 IRGGGGASFGVIIAWKIKLVTVPEIVTAFTVNRTLEQNATKIVDR 249 (515)
Q Consensus 205 ~rg~~~g~~Givt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (515)
++|+. |+|||||+++|||+|.|+......+.|+..+++.+++..
T Consensus 287 ~~Gse-GtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~ 330 (555)
T PLN02805 287 VIGSE-GTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIA 330 (555)
T ss_pred hccCC-CceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHH
Confidence 99987 899999999999999998777777777755555555544
No 3
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=1.1e-33 Score=294.76 Aligned_cols=195 Identities=22% Similarity=0.350 Sum_probs=168.9
Q ss_pred CCCCCCCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCcccCCCCCEEEEEcCCCCcE-EEcCCCCEEEE
Q 048392 46 FSTPTTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSV-SVDPEAKTAWV 124 (515)
Q Consensus 46 ~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~~~~~~~~~~~gvvIdl~~l~~v-~~d~~~~~v~v 124 (515)
|+......|.+|++|+|++||+++|++|+++++|++++|+|||+.+.... + +++|||++||+| ++|++..+|+|
T Consensus 7 W~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~~-~----gvvIdl~~l~~i~~id~~~~~vtV 81 (438)
T TIGR01678 7 WAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIACT-D----GFLIHLDKMNKVLQFDKEKKQITV 81 (438)
T ss_pred CCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCccC-C----eEEEEhhhcCCceEEcCCCCEEEE
Confidence 77777889999999999999999999999999999999999999876543 3 799999999998 99999999999
Q ss_pred cCCCCHHHHHHHHHHhCCcceec-CCCCCcccchhhhhCCCCCCcccccccccceEeEEEEEecCCcEEe-cCCCCcchh
Q 048392 125 QAGATNGKVYHTIAEKSKTLAFP-AGVCPTVGVGGLFSGGGYGFLMRKYGLAADNVVDAHLIDVNGRLLD-RKSMGEDLF 202 (515)
Q Consensus 125 ~aG~~~~~l~~~l~~~g~~l~~~-~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~-~~~~~~dL~ 202 (515)
+||+++.+|.+.|.++| +.++ .|.++.++|||.+++|++|. +.+||..+|+|+++++|++||++++ +..+++|||
T Consensus 82 ~aG~~l~~L~~~L~~~G--l~l~~~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~~~~dlf 158 (438)
T TIGR01678 82 EAGIRLYQLHEQLDEHG--YSMSNLGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEERNADVF 158 (438)
T ss_pred cCCCCHHHHHHHHHHcC--CEecCCCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCCCChhHH
Confidence 99999999999999985 5666 58889999999999999996 6899999999999999999999997 666789999
Q ss_pred hhhhcccCCceeEEEEEEEEEEeeCceEEEEEEeecchhHHHHHHHHHHHHH
Q 048392 203 WAIRGGGGASFGVIIAWKIKLVTVPEIVTAFTVNRTLEQNATKIVDRWQHVA 254 (515)
Q Consensus 203 ~a~rg~~~g~~Givt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (515)
|+.+|+. |+|||||++|||++|........ .. ....++++.|++..
T Consensus 159 ~a~~~~~-G~lGIIt~vtl~l~p~~~l~~~~--~~---~~~~~~~~~~~~~~ 204 (438)
T TIGR01678 159 QAARVSL-GCLGIIVTVTIQVVPQFHLQETS--FV---STLKELLDNWDSHW 204 (438)
T ss_pred HHHhcCC-CceEeeEEEEEEEEeccceEEEE--ec---CCHHHHHHHHHHHh
Confidence 9999987 89999999999999976533221 11 12345666666544
No 4
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=9e-34 Score=300.32 Aligned_cols=196 Identities=21% Similarity=0.314 Sum_probs=168.4
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCcccCCCCCEEEEEcCCCCcE-EEcCCCCEEEEcCCC
Q 048392 50 TTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSV-SVDPEAKTAWVQAGA 128 (515)
Q Consensus 50 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~~~~~~~~~~~gvvIdl~~l~~v-~~d~~~~~v~v~aG~ 128 (515)
....|.+||+|+|++||+++|++|+++++|+++||+||++.+.+.... ++++|||++||+| ++|+++.+|+||||+
T Consensus 52 ~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~~~~---~gividl~~ln~I~~id~~~~~v~VeaGv 128 (499)
T PRK11230 52 YRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALPLE---KGVLLVMARFNRILDINPVGRRARVQPGV 128 (499)
T ss_pred cCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcccCC---CcEEEEcccCCCceEEcCCCCEEEEcCCc
Confidence 456899999999999999999999999999999999999987666543 3899999999998 999999999999999
Q ss_pred CHHHHHHHHHHhCCcceecCCCCCcccchhhhhCCCCCCcccccccccceEeEEEEEecCCcEEec-----CCCCcchhh
Q 048392 129 TNGKVYHTIAEKSKTLAFPAGVCPTVGVGGLFSGGGYGFLMRKYGLAADNVVDAHLIDVNGRLLDR-----KSMGEDLFW 203 (515)
Q Consensus 129 ~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~~-----~~~~~dL~~ 203 (515)
++.+|.++|.++|+.+...+++...++|||.+++++.|..+.+||..+|+|++++||++||++++. +..++||+|
T Consensus 129 ~~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~~ 208 (499)
T PRK11230 129 RNLAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLKVEILTLDGEALTLGSDALDSPGFDLLA 208 (499)
T ss_pred cHHHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChhhheeEEEEEcCCCcEEEeCCccCCCCccchHh
Confidence 999999999999643222234555688999999999999999999999999999999999999972 134799999
Q ss_pred hhhcccCCceeEEEEEEEEEEeeCceEEEEEEeecchhHHHHHHHH
Q 048392 204 AIRGGGGASFGVIIAWKIKLVTVPEIVTAFTVNRTLEQNATKIVDR 249 (515)
Q Consensus 204 a~rg~~~g~~Givt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (515)
+++|+. |+|||||+++||++|.|+....+.+.|...+++.+++..
T Consensus 209 l~~Gs~-GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~ 253 (499)
T PRK11230 209 LFTGSE-GMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGD 253 (499)
T ss_pred hhccCC-CccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHH
Confidence 999998 899999999999999998777777777654444444443
No 5
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=100.00 E-value=2.6e-32 Score=289.90 Aligned_cols=180 Identities=21% Similarity=0.218 Sum_probs=158.2
Q ss_pred CCCCCCCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEc-CCCCCCCCCcccCCCCCEEEEEcCCCCc-EEEcCCCCEEE
Q 048392 46 FSTPTTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRS-GGHDYEGLSYVSNYHVPFVIIDFINLSS-VSVDPEAKTAW 123 (515)
Q Consensus 46 ~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g-~Gh~~~~~~~~~~~~~~gvvIdl~~l~~-v~~d~~~~~v~ 123 (515)
|+......|.+|++|+|++||+++|++|+++++||+++| +||++.+.+...+. +++++|||++||+ +++|.++.+|+
T Consensus 24 Wag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~~-~ggvvIdL~~Ln~il~iD~~~~tVt 102 (557)
T TIGR01677 24 FPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGS-DGALLISTKRLNHVVAVDATAMTVT 102 (557)
T ss_pred cCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCCC-CCEEEEEcccCCCCEEEeCCCCEEE
Confidence 999999999999999999999999999999999999996 69998765443210 1379999999999 59999999999
Q ss_pred EcCCCCHHHHHHHHHHhCCcceecC-CCCCcccchhhhhCCCCCCcc-cccccccceEeEEEEEecCC------cEEe-c
Q 048392 124 VQAGATNGKVYHTIAEKSKTLAFPA-GVCPTVGVGGLFSGGGYGFLM-RKYGLAADNVVDAHLIDVNG------RLLD-R 194 (515)
Q Consensus 124 v~aG~~~~~l~~~l~~~g~~l~~~~-g~~~~vgigG~~~ggg~g~~~-~~~G~~~d~v~~~~vv~~~G------~~~~-~ 194 (515)
|+||+++.+|.+.|.++| +.++. +.+..++|||.+++|++|... ++||..+|+|++++||+++| ++++ +
T Consensus 103 V~AG~~l~~L~~~L~~~G--lal~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~~s 180 (557)
T TIGR01677 103 VESGMSLRELIVEAEKAG--LALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRILS 180 (557)
T ss_pred ECCCCcHHHHHHHHHHcC--CEeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEEEeC
Confidence 999999999999999985 66665 455678999999999999766 58999999999999999998 7776 6
Q ss_pred CCCCcchhhhhhcccCCceeEEEEEEEEEEeeCce
Q 048392 195 KSMGEDLFWAIRGGGGASFGVIIAWKIKLVTVPEI 229 (515)
Q Consensus 195 ~~~~~dL~~a~rg~~~g~~Givt~~~~~l~~~~~~ 229 (515)
..+++|||||+|||+ |+|||||++|||++|.+..
T Consensus 181 ~~~~~dLf~a~rgsl-G~lGVVtevTL~~~P~~~~ 214 (557)
T TIGR01677 181 EGDTPNEFNAAKVSL-GVLGVISQVTLALQPMFKR 214 (557)
T ss_pred CCCCHHHHHhhccCC-CccEeeeEEEEEEEccccc
Confidence 667899999999998 8999999999999998763
No 6
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=1.2e-32 Score=292.59 Aligned_cols=185 Identities=27% Similarity=0.395 Sum_probs=162.6
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCcccCCCCCEEEEEcCCCCcE-EEcCCCCEEEEcCCC
Q 048392 50 TTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSV-SVDPEAKTAWVQAGA 128 (515)
Q Consensus 50 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~~~~~~~~~~~gvvIdl~~l~~v-~~d~~~~~v~v~aG~ 128 (515)
....|.+|+.|+|++||+++|++|+++++||++||+||++.|.+...+ +|+|||++||+| ++|+++.+++|+||+
T Consensus 28 ~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~~----gvvl~l~~mn~i~~id~~~~~~~v~aGv 103 (459)
T COG0277 28 YRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPDG----GVVLDLSRLNRILEIDPEDGTATVQAGV 103 (459)
T ss_pred hcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCCC----cEEEEchhhcchhccCcCCCEEEEcCCc
Confidence 456899999999999999999999999999999999999998876653 799999999999 899999999999999
Q ss_pred CHHHHHHHHHHhCCcceecCCCCCcccchhhhhCCCCCCcccccccccceEeEEEEEecCCcEEe--c----CCCCcchh
Q 048392 129 TNGKVYHTIAEKSKTLAFPAGVCPTVGVGGLFSGGGYGFLMRKYGLAADNVVDAHLIDVNGRLLD--R----KSMGEDLF 202 (515)
Q Consensus 129 ~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~--~----~~~~~dL~ 202 (515)
++.+|.++|.++|+.+.+.+++...++|||+++++++|..+.+||.++|+|+++++|++||++++ . +..++||+
T Consensus 104 ~l~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~vV~~dG~i~~~~~~~~k~~~g~dl~ 183 (459)
T COG0277 104 TLEDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLT 183 (459)
T ss_pred cHHHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEEEcCCceehhhcCcccCCCCCCCHH
Confidence 99999999999965443333444479999999999999999999999999999999999999996 1 34568999
Q ss_pred hhhhcccCCceeEEEEEEEEEEeeCceEEEEEEeecc
Q 048392 203 WAIRGGGGASFGVIIAWKIKLVTVPEIVTAFTVNRTL 239 (515)
Q Consensus 203 ~a~rg~~~g~~Givt~~~~~l~~~~~~~~~~~~~~~~ 239 (515)
++..|+. |+|||||+++||++|.|+........+..
T Consensus 184 ~l~iGs~-GtlGiit~~tl~l~p~~~~~~~~~~~~~~ 219 (459)
T COG0277 184 ALFVGSE-GTLGIITEATLKLLPLPETKATAVAGFPS 219 (459)
T ss_pred HhcccCC-ccceEEEEEEEEeccCCchheEEEEeCCC
Confidence 9999887 89999999999999998866555554444
No 7
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=5.6e-32 Score=281.78 Aligned_cols=172 Identities=23% Similarity=0.378 Sum_probs=153.6
Q ss_pred CCCCCCCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCcccCCCCCEEEEEcCCCCcE-EEcCCCCEEEE
Q 048392 46 FSTPTTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSV-SVDPEAKTAWV 124 (515)
Q Consensus 46 ~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~~~~~~~~~~~gvvIdl~~l~~v-~~d~~~~~v~v 124 (515)
|+......|.+|++|+|++||+++|+.|++ |++++|+|||+.+.+. .+ +++|||++||+| ++|+++++|+|
T Consensus 4 W~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~-~~----g~~idl~~l~~i~~~d~~~~~v~v 75 (419)
T TIGR01679 4 WSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLAC-TD----GTMISLTGLQGVVDVDQPTGLATV 75 (419)
T ss_pred CCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCccc-CC----CEEEEhhHcCCceeecCCCCEEEE
Confidence 888778899999999999999999999974 7999999999987654 33 699999999998 99999999999
Q ss_pred cCCCCHHHHHHHHHHhCCcceecC-CCCCcccchhhhhCCCCCCcccccccccceEeEEEEEecCCcEEe-cCCCCcchh
Q 048392 125 QAGATNGKVYHTIAEKSKTLAFPA-GVCPTVGVGGLFSGGGYGFLMRKYGLAADNVVDAHLIDVNGRLLD-RKSMGEDLF 202 (515)
Q Consensus 125 ~aG~~~~~l~~~l~~~g~~l~~~~-g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~-~~~~~~dL~ 202 (515)
|||+++.+|.+.|.++|+ .++. |.+..++|||.+++|++|. +..||..+|+|++++||++||++++ +..+++|||
T Consensus 76 ~aG~~l~~l~~~L~~~G~--~l~~~~~~~~~tvGG~ia~~~hG~-g~~~G~~~d~V~~l~vV~a~G~v~~~~~~~~~dLf 152 (419)
T TIGR01679 76 EAGTRLGALGPQLAQRGL--GLENQGDIDPQSIGGALGTATHGT-GVRFQALHARIVSLRLVTAGGKVLDLSEGDDQDMY 152 (419)
T ss_pred cCCCCHHHHHHHHHHcCC--ccccCCCCCCceeccceecCCCCC-CccCCchhhhEEEEEEEcCCCCEEEEcCCCCHHHH
Confidence 999999999999999964 4442 5556688999999999997 4689999999999999999999997 666789999
Q ss_pred hhhhcccCCceeEEEEEEEEEEeeCce
Q 048392 203 WAIRGGGGASFGVIIAWKIKLVTVPEI 229 (515)
Q Consensus 203 ~a~rg~~~g~~Givt~~~~~l~~~~~~ 229 (515)
||+|||+ |+|||||++|||++|....
T Consensus 153 ~a~~g~~-G~lGVIt~vtl~~~p~~~~ 178 (419)
T TIGR01679 153 LAARVSL-GALGVISQVTLQTVALFRL 178 (419)
T ss_pred HHHHhCC-CceEEEEEEEEEeecceEe
Confidence 9999997 8999999999999998753
No 8
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=2.9e-32 Score=285.52 Aligned_cols=176 Identities=19% Similarity=0.287 Sum_probs=161.5
Q ss_pred CCCCCCCCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCcccCCCCCEEEEEcCCCCcE-EEcCCCCEEE
Q 048392 45 RFSTPTTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSV-SVDPEAKTAW 123 (515)
Q Consensus 45 r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~~~~~~~~~~~gvvIdl~~l~~v-~~d~~~~~v~ 123 (515)
+|+.+....|..+++|+|++||+++|++|++++++|+++|+|||+.+.+...+ .+|||++||+| ++|+++++|+
T Consensus 53 NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t~g-----~lldL~~ln~Vl~vD~~~~tVt 127 (541)
T TIGR01676 53 NWSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLSRA-----GMVNLALMDKVLEVDEEKKRVR 127 (541)
T ss_pred ccCCccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccCCC-----eEEEhhhCCCCEEEcCCCCEEE
Confidence 49988889999999999999999999999999999999999999998777554 57999999997 9999999999
Q ss_pred EcCCCCHHHHHHHHHHhCCcceecC-CCCCcccchhhhhCCCCCCcccccccccceEeEEEEEecCCcEEe-cCCCCcch
Q 048392 124 VQAGATNGKVYHTIAEKSKTLAFPA-GVCPTVGVGGLFSGGGYGFLMRKYGLAADNVVDAHLIDVNGRLLD-RKSMGEDL 201 (515)
Q Consensus 124 v~aG~~~~~l~~~l~~~g~~l~~~~-g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~-~~~~~~dL 201 (515)
|+||+++.+|.+.|.++| +.++. |.+..++|||.+++|+||.. .+||..+|+|+++++|+++|+++. +..+++||
T Consensus 128 V~AG~~l~~L~~~L~~~G--lal~n~gsi~~~TIGGaiatgtHGtg-~~~G~l~d~V~~l~lVta~G~vv~~s~~~~pdL 204 (541)
T TIGR01676 128 VQAGIRVQQLVDAIKEYG--ITLQNFASIREQQIGGIIQVGAHGTG-AKLPPIDEQVIAMKLVTPAKGTIEISKDKDPEL 204 (541)
T ss_pred EcCCCCHHHHHHHHHHcC--CEeccCCCCCCceEccccccCCcCCC-CCCCCHHHhEEEEEEEECCCCEEEECCCCCHHH
Confidence 999999999999999995 56654 88888999999999999985 579999999999999999999987 66678999
Q ss_pred hhhhhcccCCceeEEEEEEEEEEeeCce
Q 048392 202 FWAIRGGGGASFGVIIAWKIKLVTVPEI 229 (515)
Q Consensus 202 ~~a~rg~~~g~~Givt~~~~~l~~~~~~ 229 (515)
|||.|||. |+|||||++|||+.|.+..
T Consensus 205 F~Aargsl-G~LGVItevTLr~~Pa~~l 231 (541)
T TIGR01676 205 FFLARCGL-GGLGVVAEVTLQCVERQEL 231 (541)
T ss_pred HHHHhcCC-CceEeEEEEEEEEEeccce
Confidence 99999997 8999999999999998764
No 9
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.97 E-value=2.4e-30 Score=255.49 Aligned_cols=178 Identities=25% Similarity=0.366 Sum_probs=153.0
Q ss_pred CCCCCCCCccEEEecCCHHHHHHHHHHHHhC--CCeEEEEcCCCCCCCCCcccCCCCCEEEEEcC---CCCcE-EEcCCC
Q 048392 46 FSTPTTPKPQVIVTPVKESHVQAAVKCSQKY--GLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFI---NLSSV-SVDPEA 119 (515)
Q Consensus 46 ~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~--~~~~~~~g~Gh~~~~~~~~~~~~~~gvvIdl~---~l~~v-~~d~~~ 119 (515)
|.......|.+|..|+|++||++++|.|... ++||.+||+|||..|++.... +|++|.|+ .|+++ .+..++
T Consensus 56 Fg~~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~~---~GvvV~m~~~~~~~~~~~~~~~~ 132 (505)
T KOG1231|consen 56 FGNRTQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALATR---GGVVVCMDSSLLMKDVPVLVVDD 132 (505)
T ss_pred ccccCCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccCC---CCeEEEEehhhccCCCceeeccc
Confidence 4444566999999999999999999999999 899999999999999888743 48776663 46666 566777
Q ss_pred CEEEEcCCCCHHHHHHHHHHhCCcceecCCCCCcccchhhhhCCCCCCcccccccccceEeEEEEEecCCcEEe-cCCCC
Q 048392 120 KTAWVQAGATNGKVYHTIAEKSKTLAFPAGVCPTVGVGGLFSGGGYGFLMRKYGLAADNVVDAHLIDVNGRLLD-RKSMG 198 (515)
Q Consensus 120 ~~v~v~aG~~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~-~~~~~ 198 (515)
..+.|.||..|-+|.+++.++|..-..+.-..+ .+|||.++.+|.|..+.+||...+||++++||+++|++++ +...|
T Consensus 133 ~yvdV~~g~~Widll~~t~e~GL~p~swtDyl~-ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r~n 211 (505)
T KOG1231|consen 133 LYVDVSAGTLWIDLLDYTLEYGLSPFSWTDYLP-LTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKRAN 211 (505)
T ss_pred ceEEeeCChhHHHHHHHHHHcCCCccCcCCccc-eeecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccccC
Confidence 999999999999999999998531022232233 8899999999999999999999999999999999999997 67789
Q ss_pred cchhhhhhcccCCceeEEEEEEEEEEeeCc
Q 048392 199 EDLFWAIRGGGGASFGVIIAWKIKLVTVPE 228 (515)
Q Consensus 199 ~dL~~a~rg~~~g~~Givt~~~~~l~~~~~ 228 (515)
++||+++.||. |+|||||+++++|+|.|.
T Consensus 212 ~~lf~~vlGgl-GqfGIITrArI~le~aP~ 240 (505)
T KOG1231|consen 212 SNLFFLVLGGL-GQFGIITRARIKLEPAPK 240 (505)
T ss_pred ceeeeeeeccC-cceeeEEEEEEEeccCCc
Confidence 99999999998 899999999999999993
No 10
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.97 E-value=1.9e-30 Score=270.56 Aligned_cols=188 Identities=21% Similarity=0.298 Sum_probs=162.7
Q ss_pred EEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCcccCCCCCEEEEEcCCCCcE-EEcCCCCEEEEcCCCCHHHHHH
Q 048392 57 IVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSV-SVDPEAKTAWVQAGATNGKVYH 135 (515)
Q Consensus 57 vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~~~~~~~~~~~gvvIdl~~l~~v-~~d~~~~~v~v~aG~~~~~l~~ 135 (515)
||+|+|++||+++|++|+++++|++++|+|||+.|.+...+ ++++|||++||+| ++|+++.+++||||+++.+|.+
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~~---~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~ 77 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEE---GGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQ 77 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCCC---CeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHH
Confidence 58999999999999999999999999999999987666543 4899999999998 9999999999999999999999
Q ss_pred HHHHhCCcceec--CCCCCcccchhhhhCCCCCCcccccccccceEeEEEEEecCCcEEec------CCCCcchhhhhhc
Q 048392 136 TIAEKSKTLAFP--AGVCPTVGVGGLFSGGGYGFLMRKYGLAADNVVDAHLIDVNGRLLDR------KSMGEDLFWAIRG 207 (515)
Q Consensus 136 ~l~~~g~~l~~~--~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~~------~~~~~dL~~a~rg 207 (515)
+|.++| +.++ +++...++|||.+++++.|..+.+||.++|+|++++||++||++++. ...++||+|++.|
T Consensus 78 ~l~~~g--l~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~G 155 (413)
T TIGR00387 78 AVEEHN--LFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVG 155 (413)
T ss_pred HHHHcC--CeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhccc
Confidence 999995 4444 34455688999999999999999999999999999999999999962 3457899999999
Q ss_pred ccCCceeEEEEEEEEEEeeCceEEEEEEeecchhHHHHHHHHH
Q 048392 208 GGGASFGVIIAWKIKLVTVPEIVTAFTVNRTLEQNATKIVDRW 250 (515)
Q Consensus 208 ~~~g~~Givt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (515)
+. |+|||||+++|||+|.|+....+.+.|...+++.+++..+
T Consensus 156 s~-GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~ 197 (413)
T TIGR00387 156 SE-GTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDI 197 (413)
T ss_pred CC-ccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHH
Confidence 87 8999999999999999987766666776555555555443
No 11
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.97 E-value=5.7e-30 Score=257.82 Aligned_cols=170 Identities=21% Similarity=0.300 Sum_probs=146.7
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEcCCCC-CCCCCcccCCCCCEEEEEcCCCCcE-EEcCCCCEEEEcCCCCHHHHHHHHHH
Q 048392 62 KESHVQAAVKCSQKYGLQVRVRSGGHD-YEGLSYVSNYHVPFVIIDFINLSSV-SVDPEAKTAWVQAGATNGKVYHTIAE 139 (515)
Q Consensus 62 ~~~dv~~~v~~a~~~~~~~~~~g~Gh~-~~~~~~~~~~~~~gvvIdl~~l~~v-~~d~~~~~v~v~aG~~~~~l~~~l~~ 139 (515)
.++||+++|++|+++++|++++|+||+ +.+.. .+ +++|||++||+| ++|+++.+|+|+||+++.+|.++|.+
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~~--~~----~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~ 76 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGRA--LA----GEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAE 76 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCCC--CC----CeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHH
Confidence 479999999999999999999999974 55552 23 579999999998 99999999999999999999999999
Q ss_pred hCCcceecCC-CCCcccchhhhhCCCCCCcccccccccceEeEEEEEecCCcEEe------cCCCCcchhhhhhcccCCc
Q 048392 140 KSKTLAFPAG-VCPTVGVGGLFSGGGYGFLMRKYGLAADNVVDAHLIDVNGRLLD------RKSMGEDLFWAIRGGGGAS 212 (515)
Q Consensus 140 ~g~~l~~~~g-~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~------~~~~~~dL~~a~rg~~~g~ 212 (515)
+|+.+.+.++ .+..++|||++++|++|..+.+||..+|+|+++++|+++|++++ ++..++||||+++|+. |+
T Consensus 77 ~G~~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~-Gt 155 (352)
T PRK11282 77 AGQMLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSL-GT 155 (352)
T ss_pred cCCeeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCC-ch
Confidence 9755544333 34468999999999999999999999999999999999999996 2345799999999997 89
Q ss_pred eeEEEEEEEEEEeeCceEEEEEEeec
Q 048392 213 FGVIIAWKIKLVTVPEIVTAFTVNRT 238 (515)
Q Consensus 213 ~Givt~~~~~l~~~~~~~~~~~~~~~ 238 (515)
|||||+++||++|.|+....+.+.++
T Consensus 156 LGVitevtlkl~P~p~~~~t~~~~~~ 181 (352)
T PRK11282 156 LGVLLEVSLKVLPRPRAELTLRLEMD 181 (352)
T ss_pred hhhheEEEEEEEecCceEEEEEEecC
Confidence 99999999999999986555444443
No 12
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.96 E-value=1.9e-28 Score=258.90 Aligned_cols=176 Identities=20% Similarity=0.298 Sum_probs=158.6
Q ss_pred CCCCCCCCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCcccCCCCCEEEEEcCCCCcE-EEcCCCCEEE
Q 048392 45 RFSTPTTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSV-SVDPEAKTAW 123 (515)
Q Consensus 45 r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~~~~~~~~~~~gvvIdl~~l~~v-~~d~~~~~v~ 123 (515)
+|+.+....|.+++.|+|++||+++|++|+++++||+++|+|||+.+.....+ .+|||++||+| ++|.+.++|+
T Consensus 88 NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~td~-----glIdL~~l~~Il~vD~e~~~Vt 162 (573)
T PLN02465 88 NWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAFSRE-----GMVNLALMDKVLEVDKEKKRVT 162 (573)
T ss_pred ccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeeeCCC-----EEEECcCCCCcEEEeCCCCEEE
Confidence 49998999999999999999999999999999999999999999988766544 46899999997 9999999999
Q ss_pred EcCCCCHHHHHHHHHHhCCcceecC-CCCCcccchhhhhCCCCCCcccccccccceEeEEEEEecCCcEEe-cCCCCcch
Q 048392 124 VQAGATNGKVYHTIAEKSKTLAFPA-GVCPTVGVGGLFSGGGYGFLMRKYGLAADNVVDAHLIDVNGRLLD-RKSMGEDL 201 (515)
Q Consensus 124 v~aG~~~~~l~~~l~~~g~~l~~~~-g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~-~~~~~~dL 201 (515)
|+||+++.+|.+.|.++| |+++. |.....+|||.+++|+||.. ..+|..+|+|++++||+++|++++ +..+++||
T Consensus 163 V~AG~~l~~L~~~L~~~G--Lal~n~g~I~~~TIGGaIstGtHGtG-~~~g~i~d~V~~l~lVta~G~vv~~s~~~~pdL 239 (573)
T PLN02465 163 VQAGARVQQVVEALRPHG--LTLQNYASIREQQIGGFIQVGAHGTG-ARIPPIDEQVVSMKLVTPAKGTIELSKEDDPEL 239 (573)
T ss_pred EccCCCHHHHHHHHHHcC--CEeccCCCCCCeeecchhhCCCCCcC-CCcCcHhheEEEEEEEECCCCEEEECCCCCHHH
Confidence 999999999999999995 55554 56667899999999999975 468999999999999999999886 55678999
Q ss_pred hhhhhcccCCceeEEEEEEEEEEeeCce
Q 048392 202 FWAIRGGGGASFGVIIAWKIKLVTVPEI 229 (515)
Q Consensus 202 ~~a~rg~~~g~~Givt~~~~~l~~~~~~ 229 (515)
||+.|++. |.|||||++|||+.|....
T Consensus 240 F~aar~gl-G~lGVIteVTLql~P~~~L 266 (573)
T PLN02465 240 FRLARCGL-GGLGVVAEVTLQCVPAHRL 266 (573)
T ss_pred HhHhhccC-CCCcEEEEEEEEEEecCce
Confidence 99999988 8999999999999998863
No 13
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.95 E-value=5.6e-27 Score=208.06 Aligned_cols=136 Identities=36% Similarity=0.575 Sum_probs=123.6
Q ss_pred ccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCcccCCCCCEEEEEcCCCCcE-EEcCCCCEEEEcCCCCHHH
Q 048392 54 PQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSV-SVDPEAKTAWVQAGATNGK 132 (515)
Q Consensus 54 p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~~~~~~~~~~~gvvIdl~~l~~v-~~d~~~~~v~v~aG~~~~~ 132 (515)
|.+|++|++++||+++|++|+++++|++++|+||++.+.+...+ +++|||++|++| ++|++.++++|+||+++.+
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~~~~----~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~ 76 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSSDEG----GIVIDMSRLNKIIEIDPENGTVTVGAGVTWGD 76 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTSSTT----EEEEECTTCGCEEEEETTTTEEEEETTSBHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccccCC----cEEEeeccccccccccccceeEEEeccccchh
Confidence 78999999999999999999999999999999999987766344 899999999994 9999999999999999999
Q ss_pred HHHHHHHhCCcceecCCCCCcccchhhhhCCCCCCcccccccccceEeEEEEEecCCcEEe
Q 048392 133 VYHTIAEKSKTLAFPAGVCPTVGVGGLFSGGGYGFLMRKYGLAADNVVDAHLIDVNGRLLD 193 (515)
Q Consensus 133 l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~ 193 (515)
|+++|.++|+.+.+.++.+..+++||++++|++|..++.||..+|+|+++++|++||++++
T Consensus 77 l~~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~ 137 (139)
T PF01565_consen 77 LYEALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVR 137 (139)
T ss_dssp HHHHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEE
T ss_pred cccccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEE
Confidence 9999999864333336778889999999999999999999999999999999999999985
No 14
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.92 E-value=8.7e-25 Score=225.67 Aligned_cols=197 Identities=15% Similarity=0.139 Sum_probs=162.3
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCcccCC--CCCEEEEEcCCCCcE-EEcCCCCEEEEcCC
Q 048392 51 TPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNY--HVPFVIIDFINLSSV-SVDPEAKTAWVQAG 127 (515)
Q Consensus 51 ~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~~~~~~~~--~~~gvvIdl~~l~~v-~~d~~~~~v~v~aG 127 (515)
...|.+||+|.|++||+++|++|+++++||++||||+++.|.+.+.+. .+++|||||++||+| +|| ++.+++|+||
T Consensus 36 ~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePG 114 (564)
T PRK11183 36 QGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPG 114 (564)
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCC
Confidence 457999999999999999999999999999999999999988877531 023899999999999 888 5678999999
Q ss_pred CCHHHHHHHHHHhCCcceecCCC-CCcccchhhhhCCCCCCcccccccccceEeEEEEEecCCcE-------Ee--c---
Q 048392 128 ATNGKVYHTIAEKSKTLAFPAGV-CPTVGVGGLFSGGGYGFLMRKYGLAADNVVDAHLIDVNGRL-------LD--R--- 194 (515)
Q Consensus 128 ~~~~~l~~~l~~~g~~l~~~~g~-~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~-------~~--~--- 194 (515)
+++.+|.++|.++|+-.....|+ |-.++|||.++.++.|....+||...++++. ++|+++|++ +. .
T Consensus 115 Vtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vlRgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e 193 (564)
T PRK11183 115 TTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMALY-AQIDEDGKLELVNHLGIDLGETPE 193 (564)
T ss_pred CcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhheEcchhhhhhhh-hEECCCCcEEEeeccCcccCCCHH
Confidence 99999999999996422111133 3345788999999999999999999999999 999999999 32 1
Q ss_pred ------CCCCc----------------------------------chhhhh--hcccCCceeEEEEEEEEEEeeCceEEE
Q 048392 195 ------KSMGE----------------------------------DLFWAI--RGGGGASFGVIIAWKIKLVTVPEIVTA 232 (515)
Q Consensus 195 ------~~~~~----------------------------------dL~~a~--rg~~~g~~Givt~~~~~l~~~~~~~~~ 232 (515)
+..+. |+...+ .|+. |.+||| +++|+++|.|+...+
T Consensus 194 ~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaDl~~LfeasGse-GkLgV~-avrLdtfp~p~~~~v 271 (564)
T PRK11183 194 EILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNADPRRLFEASGCA-GKLAVF-AVRLDTFPAEKNTQV 271 (564)
T ss_pred HHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCCHHHHhhccCCC-ceEEEE-EEEeccccCCCcceE
Confidence 11234 888888 7777 899999 999999999999888
Q ss_pred EEEeecchhHHHHHHHHHH
Q 048392 233 FTVNRTLEQNATKIVDRWQ 251 (515)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~ 251 (515)
|.+.++..+.+.++.+.+.
T Consensus 272 f~ig~n~~~~~~~~rr~il 290 (564)
T PRK11183 272 FYIGTNDPAVLTEIRRHIL 290 (564)
T ss_pred EEEeCCCHHHHHHHHHHHH
Confidence 9988877666666655543
No 15
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.92 E-value=5.1e-25 Score=219.38 Aligned_cols=164 Identities=20% Similarity=0.196 Sum_probs=139.8
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCcccCCCCCEEEEEcCC-CCcEEEcCCCCEEEEcCCC
Q 048392 50 TTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFIN-LSSVSVDPEAKTAWVQAGA 128 (515)
Q Consensus 50 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~~~~~~~~~~~gvvIdl~~-l~~v~~d~~~~~v~v~aG~ 128 (515)
....|.+++.|+|++||+++|++|+++++|+.++|+|||+...+.+.+ +++|||++ |+.|++ ++.+++|+||+
T Consensus 27 igg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~d~g~~----gvvI~l~~~l~~i~~--~~~~v~v~aG~ 100 (298)
T PRK13905 27 VGGPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVRDGGIR----GVVIRLGKGLNEIEV--EGNRITAGAGA 100 (298)
T ss_pred cCceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEecCCCcc----eEEEEecCCcceEEe--cCCEEEEECCC
Confidence 345899999999999999999999999999999999999876554444 89999998 999855 45789999999
Q ss_pred CHHHHHHHHHHhCCcceecCCCCCcccchhhhhCCCCCCcccccc-cccceEeEEEEEecCCcEEecCCCCcchhhhhhc
Q 048392 129 TNGKVYHTIAEKSKTLAFPAGVCPTVGVGGLFSGGGYGFLMRKYG-LAADNVVDAHLIDVNGRLLDRKSMGEDLFWAIRG 207 (515)
Q Consensus 129 ~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G-~~~d~v~~~~vv~~~G~~~~~~~~~~dL~~a~rg 207 (515)
+|.+|.++|.++|+ .|.+..++++| +.||+.+++++.|| .++|+|+++++|+++|++++.. +.|++|+||+
T Consensus 101 ~~~~L~~~l~~~Gl-----~gle~~~gipG-TVGGai~~NaG~~G~~~~d~v~~v~vv~~~G~~~~~~--~~e~~~~yR~ 172 (298)
T PRK13905 101 PLIKLARFAAEAGL-----SGLEFAAGIPG-TVGGAVFMNAGAYGGETADVLESVEVLDRDGEIKTLS--NEELGFGYRH 172 (298)
T ss_pred cHHHHHHHHHHcCC-----CcchhccCCCc-chhHHHHHcCCcCceEhheeEEEEEEEeCCCCEEEEE--HHHcCCcCcc
Confidence 99999999999964 35666677777 56777777788888 7899999999999999999743 3599999999
Q ss_pred ccCC-ceeEEEEEEEEEEeeC
Q 048392 208 GGGA-SFGVIIAWKIKLVTVP 227 (515)
Q Consensus 208 ~~~g-~~Givt~~~~~l~~~~ 227 (515)
+..+ .+||||+++||++|..
T Consensus 173 s~~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 173 SALQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred ccCCCCCEEEEEEEEEEcCCC
Confidence 8754 3899999999999963
No 16
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.90 E-value=8.4e-23 Score=202.31 Aligned_cols=183 Identities=23% Similarity=0.304 Sum_probs=158.0
Q ss_pred CCCCCCCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCcccCCCCCEEEEEcCCCCcE-EEcCCCCEEEE
Q 048392 46 FSTPTTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSV-SVDPEAKTAWV 124 (515)
Q Consensus 46 ~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~~~~~~~~~~~gvvIdl~~l~~v-~~d~~~~~v~v 124 (515)
|+.....+.+-|-+|+|++||.++|+.|++++.++++.|.||+.....+.+ |.+|+|.+||+| ++|++..++||
T Consensus 42 fPdr~~c~aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~ctd-----g~lisl~~lnkVv~~dpe~~tvTV 116 (518)
T KOG4730|consen 42 FPDRSTCKAANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVCTD-----GLLISLDKLNKVVEFDPELKTVTV 116 (518)
T ss_pred cCchhhhhhcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCcceecc-----ccEEEhhhhccceeeCchhceEEe
Confidence 444444566677889999999999999999999999999999998877765 589999999997 99999999999
Q ss_pred cCCCCHHHHHHHHHHhCCcceecC-CCCCcccchhhhhCCCCCCcccccccccceEeEEEEEecCCcEEe-cCCCCcchh
Q 048392 125 QAGATNGKVYHTIAEKSKTLAFPA-GVCPTVGVGGLFSGGGYGFLMRKYGLAADNVVDAHLIDVNGRLLD-RKSMGEDLF 202 (515)
Q Consensus 125 ~aG~~~~~l~~~l~~~g~~l~~~~-g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~-~~~~~~dL~ 202 (515)
++|+++.||.+++.+. ||+++. |+-...+|||++..|+||....-|+......+...++.++|.++. +++.+||+|
T Consensus 117 ~aGirlrQLie~~~~~--GlsL~~~~si~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~dpe~F 194 (518)
T KOG4730|consen 117 QAGIRLRQLIEELAKL--GLSLPNAPSISEQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEEKDPELF 194 (518)
T ss_pred ccCcCHHHHHHHHHhc--CccccCCCceecceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEecccCCHHHH
Confidence 9999999999999998 566665 777789999999999999887767777777777777888998775 777889999
Q ss_pred hhhhcccCCceeEEEEEEEEEEeeCceEEEEEEe
Q 048392 203 WAIRGGGGASFGVIIAWKIKLVTVPEIVTAFTVN 236 (515)
Q Consensus 203 ~a~rg~~~g~~Givt~~~~~l~~~~~~~~~~~~~ 236 (515)
.|.+.+. |-+|||.++||++.|.-+....+.+.
T Consensus 195 ~AAkvSL-G~LGVIs~VTl~~vp~Fk~s~t~~v~ 227 (518)
T KOG4730|consen 195 NAAKVSL-GVLGVISQVTLSVVPAFKRSLTYVVT 227 (518)
T ss_pred hhhhhcc-cceeEEEEEEEEEEecceeeeEEEEe
Confidence 9999998 79999999999999987766555553
No 17
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.88 E-value=3e-22 Score=198.73 Aligned_cols=163 Identities=18% Similarity=0.191 Sum_probs=136.8
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCcccCCCCCEEEEEcCC-CCcEEEcCCCCEEEEcCCC
Q 048392 50 TTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFIN-LSSVSVDPEAKTAWVQAGA 128 (515)
Q Consensus 50 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~~~~~~~~~~~gvvIdl~~-l~~v~~d~~~~~v~v~aG~ 128 (515)
....|.+++.|+|++||++++++|+++++|+.++|+|||+...+.+.+ +++|+|++ ++.+.++ +.+++|+||+
T Consensus 32 igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNllv~d~g~~----gvVI~l~~~~~~i~~~--~~~v~v~AG~ 105 (302)
T PRK14652 32 VGGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTLVADAGVR----GVVLRLPQDFPGESTD--GGRLVLGAGA 105 (302)
T ss_pred cCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcceeecCCCEe----eEEEEecCCcceEEec--CCEEEEECCC
Confidence 456899999999999999999999999999999999999875554444 89999976 5666543 5699999999
Q ss_pred CHHHHHHHHHHhCCcceecCCCCCcccchhhhhCCCCCCccc-ccccccceEeEEEEEecCCcEEecCCCCcchhhhhhc
Q 048392 129 TNGKVYHTIAEKSKTLAFPAGVCPTVGVGGLFSGGGYGFLMR-KYGLAADNVVDAHLIDVNGRLLDRKSMGEDLFWAIRG 207 (515)
Q Consensus 129 ~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~-~~G~~~d~v~~~~vv~~~G~~~~~~~~~~dL~~a~rg 207 (515)
.|.+|.+++.++| | .|.++.+||+| +.||+..++++ +||.++|+|+++++|+++| +++.. ..|+.|+||+
T Consensus 106 ~~~~L~~~~~~~G--L---~GlE~l~gIPG-TvGGav~mNaGa~ggei~d~v~~v~vv~~~G-~~~~~--~~e~~f~YR~ 176 (302)
T PRK14652 106 PISRLPARAHAHG--L---VGMEFLAGIPG-TLGGAVAMNAGTKLGEMKDVVTAVELATADG-AGFVP--AAALGYAYRT 176 (302)
T ss_pred cHHHHHHHHHHcC--C---cccccccCCCc-chhHHHHHcCCCCceEhhheEEEEEEECCCC-cEEee--hhhcCcccce
Confidence 9999999999985 4 48888999998 77888888875 6778999999999999999 44332 3599999998
Q ss_pred ccCCceeEEEEEEEEEEeeC
Q 048392 208 GGGASFGVIIAWKIKLVTVP 227 (515)
Q Consensus 208 ~~~g~~Givt~~~~~l~~~~ 227 (515)
+..+..||||+++|||+|.+
T Consensus 177 s~~~~~~II~~a~~~L~~~~ 196 (302)
T PRK14652 177 CRLPPGAVITRVEVRLRPGD 196 (302)
T ss_pred eccCCCeEEEEEEEEEecCC
Confidence 75443489999999999854
No 18
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.88 E-value=3e-22 Score=197.55 Aligned_cols=163 Identities=17% Similarity=0.174 Sum_probs=142.1
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCcccCCCCCEEEEEcCCCCcEEEcCCCCEEEEcCCCC
Q 048392 50 TTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTAWVQAGAT 129 (515)
Q Consensus 50 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~~~~~~~~~~~gvvIdl~~l~~v~~d~~~~~v~v~aG~~ 129 (515)
....|.++++|+|++||++++++|+++++|+.++|+|||+...+.+.+ +++|++++|+.+.+++ +.+++|+||+.
T Consensus 9 igg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d~~~~----gvvi~l~~~~~~~~~~-~~~v~v~aG~~ 83 (284)
T TIGR00179 9 IGGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILDDGRG----GVIINLGKGIDIEDDE-GEYVHVGGGEN 83 (284)
T ss_pred cCceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEccCCcC----eEEEECCCCceEEEec-CCEEEEEcCCc
Confidence 456899999999999999999999999999999999999987776555 8999999999887666 57999999999
Q ss_pred HHHHHHHHHHhCCcceecCCCCCcccchhhhhCCCCCCcccccccccc-eEeEEEEEecCCcEEecCCCCcchhhhhhcc
Q 048392 130 NGKVYHTIAEKSKTLAFPAGVCPTVGVGGLFSGGGYGFLMRKYGLAAD-NVVDAHLIDVNGRLLDRKSMGEDLFWAIRGG 208 (515)
Q Consensus 130 ~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d-~v~~~~vv~~~G~~~~~~~~~~dL~~a~rg~ 208 (515)
|.+|.+++.++| | .|.+..+|++| +.||+.+++++.||..++ .|++++||+++|++++.. ..|+.|+||.+
T Consensus 84 ~~~l~~~~~~~G--l---~GlE~l~giPG-tvGGai~mNAGayG~~i~d~l~~v~vv~~~G~~~~~~--~~~~~f~YR~S 155 (284)
T TIGR00179 84 WHKLVKYALKNG--L---SGLEFLAGIPG-TVGGAVIMNAGAYGVEISEVLVYATILLATGKTEWLT--NEQLGFGYRTS 155 (284)
T ss_pred HHHHHHHHHHCC--C---cccccCCCCCc-hHHHHHHHhcccchhehhheEEEEEEEeCCCCEEEEE--HHHccccCCcc
Confidence 999999999985 4 58999999999 689999999999999875 689999999999998753 35999999976
Q ss_pred cCCc-e-eEEEEEEEEEEe
Q 048392 209 GGAS-F-GVIIAWKIKLVT 225 (515)
Q Consensus 209 ~~g~-~-Givt~~~~~l~~ 225 (515)
.... . .||++++|++.+
T Consensus 156 ~f~~~~~~iil~a~~~l~~ 174 (284)
T TIGR00179 156 IFQHKYVGLVLKAEFQLTL 174 (284)
T ss_pred ccCCCCcEEEEEEEEEecc
Confidence 5432 1 699999999843
No 19
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.88 E-value=3.1e-22 Score=199.10 Aligned_cols=163 Identities=20% Similarity=0.232 Sum_probs=133.7
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCcccCCCCCEEEEEcCCCCcEEEcCCCCEEEEcCCCC
Q 048392 50 TTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTAWVQAGAT 129 (515)
Q Consensus 50 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~~~~~~~~~~~gvvIdl~~l~~v~~d~~~~~v~v~aG~~ 129 (515)
....|.++++|+|++||++++++|+++++|++++|+|||+...+.+.+ +++|+|++|+.|+++ +.+++|+||+.
T Consensus 33 igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll~~d~g~~----GvvI~l~~l~~i~~~--~~~v~v~aG~~ 106 (305)
T PRK12436 33 VGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVIIKDGGIR----GITVSLIHITGVTVT--GTTIVAQCGAA 106 (305)
T ss_pred cCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEEEeCCCee----EEEEEeCCcCcEEEe--CCEEEEEeCCc
Confidence 456799999999999999999999999999999999999875555444 899999889998775 46899999999
Q ss_pred HHHHHHHHHHhCCcceecCCCCCcccchhhhhCCCCCCcccccc-cccceEeEEEEEecCCcEEecCCCCcchhhhhhcc
Q 048392 130 NGKVYHTIAEKSKTLAFPAGVCPTVGVGGLFSGGGYGFLMRKYG-LAADNVVDAHLIDVNGRLLDRKSMGEDLFWAIRGG 208 (515)
Q Consensus 130 ~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G-~~~d~v~~~~vv~~~G~~~~~~~~~~dL~~a~rg~ 208 (515)
+.+|.+++.++|+ .|.+..+|++| +.||+..++++.|| ...|.+.+++|++++|++++.. +.|+.|+||.+
T Consensus 107 ~~~L~~~~~~~gl-----~Gle~~~giPG-tVGGav~~NAGayG~~~~dvl~~v~vv~~~G~v~~~~--~~e~~f~YR~s 178 (305)
T PRK12436 107 IIDVSRIALDHNL-----TGLEFACGIPG-SVGGALYMNAGAYGGEISFVLTEAVVMTGDGELRTLT--KEAFEFGYRKS 178 (305)
T ss_pred HHHHHHHHHHcCC-----ccchhhcCCcc-chhHHHHhcCccchhehheeeeEEEEEeCCCCEEEEE--HHHhcCcCCCC
Confidence 9999999999964 24444455555 34566666677788 5668888999999999999753 34999999987
Q ss_pred cCC-ceeEEEEEEEEEEee
Q 048392 209 GGA-SFGVIIAWKIKLVTV 226 (515)
Q Consensus 209 ~~g-~~Givt~~~~~l~~~ 226 (515)
... ...||++++|++.+.
T Consensus 179 ~~~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 179 VFANNHYIILEARFELEEG 197 (305)
T ss_pred cCCCCCEEEEEEEEEEcCC
Confidence 543 357999999999874
No 20
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.88 E-value=2.7e-22 Score=193.99 Aligned_cols=212 Identities=20% Similarity=0.257 Sum_probs=180.2
Q ss_pred CcchhHHHHHHhhCCCCCCcccceEecCCCCCchhHHhhcccccCCCCCCCCCccEEEecCCHHHHHHHHHHHHhCCCeE
Q 048392 1 SDDAHKFVQCLLENSEDSTSISKLIYTRTNSSFSSILDFSIQNLRFSTPTTPKPQVIVTPVKESHVQAAVKCSQKYGLQV 80 (515)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~ 80 (515)
|+|..-++++|++....+ .|.| -+ .+|.-|...+...-..+..|.++++|++++++|+++++.+
T Consensus 53 ~~Dl~~Fk~iLg~d~~~~--------~~ed--L~------~~n~dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~~kLAV 116 (511)
T KOG1232|consen 53 SKDLAYFKSILGKDEVST--------DKED--LE------NFNTDWMKKYRGQSKLVLKPKSTEEVSAILKYCNDRKLAV 116 (511)
T ss_pred HHHHHHHHHHhccccccc--------ChHH--Hh------hhhhHHHHhccCCceEEecCCCHHHHHHHHHhhccccEEE
Confidence 356777899999855332 1221 11 1244577777889999999999999999999999999999
Q ss_pred EEEcCCCCCCCCCcccCCCCCEEEEEcCCCCcE-EEcCCCCEEEEcCCCCHHHHHHHHHHhCCcceecCCCCCcccchhh
Q 048392 81 RVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSV-SVDPEAKTAWVQAGATNGKVYHTIAEKSKTLAFPAGVCPTVGVGGL 159 (515)
Q Consensus 81 ~~~g~Gh~~~~~~~~~~~~~~gvvIdl~~l~~v-~~d~~~~~v~v~aG~~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~ 159 (515)
++.||-+...|.+.+.- +.|||+|.+||+| ++|+-.+++++++|+.+.++.++|+++|+.+++.-|.-+++-|||.
T Consensus 117 VPQGGNTgLVGgSVPvf---DEiVlsl~~mNKi~sfDevsGil~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~ 193 (511)
T KOG1232|consen 117 VPQGGNTGLVGGSVPVF---DEIVLSLGLMNKILSFDEVSGILKCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGN 193 (511)
T ss_pred ecCCCCcccccCcccch---HHHhhhhhhhccccccccccceEEeccceEehhhHHHHHhcCceeeecCCCcccceecce
Confidence 99999999888887753 3799999999999 9999999999999999999999999997655555577777779999
Q ss_pred hhCCCCCCcccccccccceEeEEEEEecCCcEEe------cCCCCcchhhhhhcccCCceeEEEEEEEEEEeeCceEEE
Q 048392 160 FSGGGYGFLMRKYGLAADNVVDAHLIDVNGRLLD------RKSMGEDLFWAIRGGGGASFGVIIAWKIKLVTVPEIVTA 232 (515)
Q Consensus 160 ~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~------~~~~~~dL~~a~rg~~~g~~Givt~~~~~l~~~~~~~~~ 232 (515)
++..+.|..--+||...-+|+++|+|+|+|+|+. ....+.||-+.+.|+. |++||||++++-+.|.|+.+..
T Consensus 194 vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slRKDNTgydlkhLFIGSE-GtlGVvT~vSil~~~kpksvn~ 271 (511)
T KOG1232|consen 194 VSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLRKDNTGYDLKHLFIGSE-GTLGVVTKVSILAPPKPKSVNV 271 (511)
T ss_pred eeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhcccCccccchhheecCC-ceeeEEeeEEEeecCCCcceeE
Confidence 9999999999999999999999999999999985 3456799999999987 8999999999999999886543
No 21
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.87 E-value=7.6e-22 Score=196.27 Aligned_cols=162 Identities=20% Similarity=0.209 Sum_probs=139.5
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCcccCCCCCEEEEEcCCCCcEEEcCCCCEEEEcCCCCH
Q 048392 51 TPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTAWVQAGATN 130 (515)
Q Consensus 51 ~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~~~~~~~~~~~gvvIdl~~l~~v~~d~~~~~v~v~aG~~~ 130 (515)
...+.+++.|+|++||+++|++|+++++|++++|+|||+...+.+.+ |++|++++|++|+++ +.+++|+||+.+
T Consensus 34 GG~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll~~d~g~~----GvvI~l~~l~~i~~~--~~~v~v~aG~~~ 107 (307)
T PRK13906 34 GGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGGIR----GIVISLLSLDHIEVS--DDAIIAGSGAAI 107 (307)
T ss_pred CceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEeecCCCcc----eEEEEecCccceEEe--CCEEEEECCCcH
Confidence 35799999999999999999999999999999999999886655555 899999889999875 358999999999
Q ss_pred HHHHHHHHHhCCcceecCCCCCcccchhhhhCCCCCCcccccc-cccceEeEEEEEecCCcEEecCCCCcchhhhhhccc
Q 048392 131 GKVYHTIAEKSKTLAFPAGVCPTVGVGGLFSGGGYGFLMRKYG-LAADNVVDAHLIDVNGRLLDRKSMGEDLFWAIRGGG 209 (515)
Q Consensus 131 ~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G-~~~d~v~~~~vv~~~G~~~~~~~~~~dL~~a~rg~~ 209 (515)
.+|.+++.++| | .|.+..+||+| +.||+..++++.|| .++|+|+++++|+++|++++... .|+.|+||.+.
T Consensus 108 ~~l~~~~~~~G--l---~GlE~~~gIPG-tVGGav~mNaGayGg~i~D~l~~v~vv~~~G~~~~~~~--~e~~f~YR~S~ 179 (307)
T PRK13906 108 IDVSRVARDYA--L---TGLEFACGIPG-SIGGAVYMNAGAYGGEVKDCIDYALCVNEQGSLIKLTT--KELELDYRNSI 179 (307)
T ss_pred HHHHHHHHHcC--C---ccchhhcCCCc-cHhHHHHhhCCcchhhhhhheeEEEEEeCCCCEEEEEH--HHccCcCCccc
Confidence 99999999985 4 57777788988 67888888888996 78999999999999999997533 48999999765
Q ss_pred CCc-eeEEEEEEEEEEee
Q 048392 210 GAS-FGVIIAWKIKLVTV 226 (515)
Q Consensus 210 ~g~-~Givt~~~~~l~~~ 226 (515)
... --||++++|+|.|.
T Consensus 180 ~~~~~~ii~~~~~~l~~~ 197 (307)
T PRK13906 180 IQKEHLVVLEAAFTLAPG 197 (307)
T ss_pred CCCCCEEEEEEEEEECCC
Confidence 432 24999999999863
No 22
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.86 E-value=3.1e-21 Score=194.63 Aligned_cols=165 Identities=19% Similarity=0.160 Sum_probs=133.4
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCcccCCCCCEEEEEcCCCCcEEEcCCCCEEEEcCCCC
Q 048392 50 TTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTAWVQAGAT 129 (515)
Q Consensus 50 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~~~~~~~~~~~gvvIdl~~l~~v~~d~~~~~v~v~aG~~ 129 (515)
....+.+++.|+|++||++++++|+++++|+.|+|+|||+...+.+.+ |+||+++ ++.++++.+..+++|+||+.
T Consensus 29 iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNlLv~D~g~~----GvVI~l~-~~~i~i~~~~~~v~vgAG~~ 103 (363)
T PRK13903 29 VGGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLVIADDGFD----GTVVRVA-TRGVTVDCGGGLVRAEAGAV 103 (363)
T ss_pred cCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeEeECCCCcc----EEEEEeC-CCcEEEeCCCCEEEEEcCCC
Confidence 456899999999999999999999999999999999999886665555 8999997 58888876677999999999
Q ss_pred HHHHHHHHHHhCCcceecCCCCCcccchhhhhCCCCCCccccccc-ccceEeEEEEEecC-CcEEecCCCCcchhhhhhc
Q 048392 130 NGKVYHTIAEKSKTLAFPAGVCPTVGVGGLFSGGGYGFLMRKYGL-AADNVVDAHLIDVN-GRLLDRKSMGEDLFWAIRG 207 (515)
Q Consensus 130 ~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vv~~~-G~~~~~~~~~~dL~~a~rg 207 (515)
|.+|.+++.++|+ .|.+..+||+|.+ ||+.-++.+.||. +.|.|.++++++.+ |++++.. +.||+|+||+
T Consensus 104 ~~~l~~~a~~~GL-----~GlE~laGIPGTV-GGAv~mNaGayG~ei~D~l~sV~vvd~~~G~~~~~~--~~el~f~YR~ 175 (363)
T PRK13903 104 WDDVVARTVEAGL-----GGLECLSGIPGSA-GATPVQNVGAYGQEVSDTITRVRLLDRRTGEVRWVP--AADLGFGYRT 175 (363)
T ss_pred HHHHHHHHHHcCC-----ccccccCCCCcch-hhHhhcCCChhHHHHhhhEeEEEEEECCCCEEEEEE--HHHcceeccc
Confidence 9999999999965 4444555555532 4444445555554 58999999999965 9999753 4699999998
Q ss_pred ccC--CceeEEEEEEEEEEeeC
Q 048392 208 GGG--ASFGVIIAWKIKLVTVP 227 (515)
Q Consensus 208 ~~~--g~~Givt~~~~~l~~~~ 227 (515)
+.. ++++|||+++|+|+|..
T Consensus 176 S~f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 176 SVLKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred cccCCCCCEEEEEEEEEEEcCC
Confidence 632 24789999999999864
No 23
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.83 E-value=8.4e-20 Score=180.82 Aligned_cols=165 Identities=18% Similarity=0.188 Sum_probs=137.0
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCcccCCCCCEEEEEcCCCC-cEEEcCCCCEEEEcCCC
Q 048392 50 TTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLS-SVSVDPEAKTAWVQAGA 128 (515)
Q Consensus 50 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~~~~~~~~~~~gvvIdl~~l~-~v~~d~~~~~v~v~aG~ 128 (515)
......+++.|+|++||++++++|+++++|+.++|+|||+...+.+.+ |++|++++++ .+..+.+..+++|+||+
T Consensus 17 iGg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d~g~~----GvVI~l~~~~~~i~~~~~~~~v~v~AG~ 92 (295)
T PRK14649 17 IGGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRDEGFD----GLVARYRGQRWELHEHGDTAEVWVEAGA 92 (295)
T ss_pred eCceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEeCCCcC----eEEEEecCCCcEEEEeCCcEEEEEEcCC
Confidence 445788899999999999999999999999999999999998887776 8999998754 66665555589999999
Q ss_pred CHHHHHHHHHHhCCcceecCCCCCcccchhhhhCC-CCCCcccccccccceEeEEEEEecCCcEEecCCCCcchhhhhhc
Q 048392 129 TNGKVYHTIAEKSKTLAFPAGVCPTVGVGGLFSGG-GYGFLMRKYGLAADNVVDAHLIDVNGRLLDRKSMGEDLFWAIRG 207 (515)
Q Consensus 129 ~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~gg-g~g~~~~~~G~~~d~v~~~~vv~~~G~~~~~~~~~~dL~~a~rg 207 (515)
+|.+|.+++.++| | .|.++.+||+| ++|| .++......+.++|.|.++++++.+|++++... .||+|+||.
T Consensus 93 ~~~~l~~~~~~~G--L---~GlE~l~GIPG-TvGGa~~mNaGayg~ei~d~l~~V~~~~~~g~~~~~~~--~el~f~YR~ 164 (295)
T PRK14649 93 PMAGTARRLAAQG--W---AGLEWAEGLPG-TIGGAIYGNAGCYGGDTATVLIRAWLLLNGSECVEWSV--HDFAYGYRT 164 (295)
T ss_pred cHHHHHHHHHHcC--C---ccccccCCCCc-chhHHHHhhccccceEhheeEEEEEEEeCCCCEEEEeH--HHcCcccce
Confidence 9999999999985 4 67889999999 5566 555555555578899999999999999987533 499999998
Q ss_pred ccCCce---------eEEEEEEEEEEee
Q 048392 208 GGGASF---------GVIIAWKIKLVTV 226 (515)
Q Consensus 208 ~~~g~~---------Givt~~~~~l~~~ 226 (515)
+..... -||++++|++.+.
T Consensus 165 S~~~~~~~~~~~~~~~ii~~~~~~l~~~ 192 (295)
T PRK14649 165 SVLKQLRADGITWRPPLVLAARFRLHRD 192 (295)
T ss_pred eecccccccccccCCeEEEEEEEEECCC
Confidence 753321 3999999999875
No 24
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.82 E-value=1.1e-19 Score=176.21 Aligned_cols=189 Identities=22% Similarity=0.294 Sum_probs=160.2
Q ss_pred CCCCCCCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCC-CCCcccCCCCCEEEEEcCCCCcE-EEcCCCCEEE
Q 048392 46 FSTPTTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYE-GLSYVSNYHVPFVIIDFINLSSV-SVDPEAKTAW 123 (515)
Q Consensus 46 ~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~-~~~~~~~~~~~gvvIdl~~l~~v-~~d~~~~~v~ 123 (515)
|.......|+.||.|+..+||.++|+.|.++++-+.+.|||+|.. +...+.+..+.-+.+|++.||+| -+|.++-++.
T Consensus 153 regkf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~ 232 (613)
T KOG1233|consen 153 REGKFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCR 232 (613)
T ss_pred hcCccCCCCceEecccchHHHHHHHHHHhhcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhheeEeccccceEE
Confidence 444566799999999999999999999999999999999999975 45555442223455788999998 8999999999
Q ss_pred EcCCCCHHHHHHHHHHhCCcceecCCCCC----cccchhhhhCCCCCCcccccccccceEeEEEEEecCCcEEe-----c
Q 048392 124 VQAGATNGKVYHTIAEKSKTLAFPAGVCP----TVGVGGLFSGGGYGFLMRKYGLAADNVVDAHLIDVNGRLLD-----R 194 (515)
Q Consensus 124 v~aG~~~~~l~~~l~~~g~~l~~~~g~~~----~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~-----~ 194 (515)
+++|+.-.+|.+.|.+.| + ..|.+| -.++||+++..+.|+--..||.+-|.|+.+++|++.|.+.. .
T Consensus 233 ~eaGIvGQ~LERqL~~~G--~--t~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq~PR 308 (613)
T KOG1233|consen 233 AEAGIVGQSLERQLNKKG--F--TCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQVPR 308 (613)
T ss_pred EecCcchHHHHHHHhhcC--c--ccCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhhhcCCc
Confidence 999999999999999985 3 234444 46899999999999999999999999999999999998874 3
Q ss_pred CCCCcchhhhhhcccCCceeEEEEEEEEEEeeCceEEEEEEeecc
Q 048392 195 KSMGEDLFWAIRGGGGASFGVIIAWKIKLVTVPEIVTAFTVNRTL 239 (515)
Q Consensus 195 ~~~~~dL~~a~rg~~~g~~Givt~~~~~l~~~~~~~~~~~~~~~~ 239 (515)
-+.+||+-+-+.|+. |++||||++++|+.|+|+....-.+.|+.
T Consensus 309 mS~GPDihh~IlGSE-GTLGVitEvtiKirPiPe~~ryGS~aFPN 352 (613)
T KOG1233|consen 309 MSSGPDIHHIILGSE-GTLGVITEVTIKIRPIPEVKRYGSFAFPN 352 (613)
T ss_pred ccCCCCcceEEeccC-cceeEEEEEEEEEeechhhhhcCccccCc
Confidence 346899999999887 89999999999999999865555566654
No 25
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.77 E-value=2.4e-18 Score=169.78 Aligned_cols=162 Identities=17% Similarity=0.249 Sum_probs=138.2
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCcccCCCCCEEEEEcCCCCcEEEcCCCCEEEEcCCCC
Q 048392 50 TTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTAWVQAGAT 129 (515)
Q Consensus 50 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~~~~~~~~~~~gvvIdl~~l~~v~~d~~~~~v~v~aG~~ 129 (515)
......+++.|++++||++++++|++ ++|+.++|+|+|....+.+.+ ++||.+++|+.++++ +..++|+||+.
T Consensus 30 iGG~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~d~g~~----gvVI~l~~~~~i~i~--~~~v~v~AG~~ 102 (297)
T PRK14653 30 IGGPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPKDEPMD----FVVVSTERLDDIFVD--NDKIICESGLS 102 (297)
T ss_pred eCcEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEecCCcc----EEEEEeCCcCceEEe--CCEEEEeCCCc
Confidence 44577889999999999999999999 999999999999998887776 899999789999886 36899999999
Q ss_pred HHHHHHHHHHhCCcceecCCCCCcccchhhhhCCCCCCccccccc-ccceEeEEEEEecCCcEEecCCCCcchhhhhhcc
Q 048392 130 NGKVYHTIAEKSKTLAFPAGVCPTVGVGGLFSGGGYGFLMRKYGL-AADNVVDAHLIDVNGRLLDRKSMGEDLFWAIRGG 208 (515)
Q Consensus 130 ~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vv~~~G~~~~~~~~~~dL~~a~rg~ 208 (515)
+.+|.+++.++| | .|.+..+||+|. .||+.-++++.||. +.|.|.++++++ +|++++... .|+-|.||.+
T Consensus 103 l~~L~~~~~~~G--L---~GlE~l~gIPGT-VGGAv~mNAGayG~ei~d~l~~V~~~d-~g~v~~~~~--~e~~f~YR~S 173 (297)
T PRK14653 103 LKKLCLVAAKNG--L---SGFENAYGIPGS-VGGAVYMNAGAYGWETAENIVEVVAYD-GKKIIRLGK--NEIKFSYRNS 173 (297)
T ss_pred HHHHHHHHHHCC--C---cchhhhcCCchh-HHHHHHHhCccCchhhheeEEEEEEEC-CCEEEEEch--hhccccCccc
Confidence 999999999995 3 677888888884 68888888888998 889999999999 788886433 4999999976
Q ss_pred cCCc--eeEEEEEEEEEEeeC
Q 048392 209 GGAS--FGVIIAWKIKLVTVP 227 (515)
Q Consensus 209 ~~g~--~Givt~~~~~l~~~~ 227 (515)
..+. -.|||+++|+|.|..
T Consensus 174 ~~~~~~~~iI~~a~f~L~~~~ 194 (297)
T PRK14653 174 IFKEEKDLIILRVTFKLKKGN 194 (297)
T ss_pred cCCCCCcEEEEEEEEEEecCC
Confidence 5432 239999999998753
No 26
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.73 E-value=2.6e-17 Score=159.12 Aligned_cols=169 Identities=21% Similarity=0.239 Sum_probs=145.8
Q ss_pred CCC-CCCCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCcccCCCCCEEEEEcCCCCcEEEcCCCCEEEE
Q 048392 46 FST-PTTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTAWV 124 (515)
Q Consensus 46 ~~~-~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~~~~~~~~~~~gvvIdl~~l~~v~~d~~~~~v~v 124 (515)
|+. .+......++.|++.+|+.++++++.+.++|+.+.|+|+|.+..+.+.+ +++|.+.+++.++++.+...++|
T Consensus 12 ~ttfriGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlLv~d~g~~----gvvi~~~~~~~~~~~~~~~~i~a 87 (291)
T COG0812 12 YTTFRIGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLLVRDGGIG----GVVIKLGKLNFIEIEGDDGLIEA 87 (291)
T ss_pred ceeEecCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEEEecCCCc----eEEEEcccccceeeeccCCeEEE
Confidence 444 3556889999999999999999999999999999999999887777766 89999999988888777779999
Q ss_pred cCCCCHHHHHHHHHHhCCcceecCCCCCcccchhhhhCCCCCCccccccc-ccceEeEEEEEecCCcEEecCCCCcchhh
Q 048392 125 QAGATNGKVYHTIAEKSKTLAFPAGVCPTVGVGGLFSGGGYGFLMRKYGL-AADNVVDAHLIDVNGRLLDRKSMGEDLFW 203 (515)
Q Consensus 125 ~aG~~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vv~~~G~~~~~~~~~~dL~~ 203 (515)
++|+.|.+|.+++.++| | .|.+..+||+| +.||+.-++.+.||. +.|.+.++++++.+|++++.. +.||-|
T Consensus 88 ~aG~~~~~l~~~~~~~g--l---~GlE~l~gIPG-svGgav~mNaGAyG~Ei~d~~~~v~~ld~~G~~~~l~--~~el~f 159 (291)
T COG0812 88 GAGAPWHDLVRFALENG--L---SGLEFLAGIPG-SVGGAVIMNAGAYGVEISDVLVSVEVLDRDGEVRWLS--AEELGF 159 (291)
T ss_pred ccCCcHHHHHHHHHHcC--C---cchhhhcCCCc-ccchhhhccCcccccchheeEEEEEEEcCCCCEEEEE--HHHhCc
Confidence 99999999999999985 3 78888899999 557788888888886 579999999999999999753 359999
Q ss_pred hhhcccCCce-eEEEEEEEEEEee
Q 048392 204 AIRGGGGASF-GVIIAWKIKLVTV 226 (515)
Q Consensus 204 a~rg~~~g~~-Givt~~~~~l~~~ 226 (515)
+||-+....- .||++++|+|.|-
T Consensus 160 ~YR~S~f~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 160 GYRTSPFKKEYLVVLSVEFKLTKG 183 (291)
T ss_pred ccccCcCCCCCEEEEEEEEEeCCC
Confidence 9997764433 8999999999985
No 27
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.72 E-value=3.5e-17 Score=160.88 Aligned_cols=164 Identities=15% Similarity=0.150 Sum_probs=138.8
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCcc-cCCCCCEEEEEcCCCCcEEEcCCCCEEEEcCCC
Q 048392 50 TTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYV-SNYHVPFVIIDFINLSSVSVDPEAKTAWVQAGA 128 (515)
Q Consensus 50 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~~~~~-~~~~~~gvvIdl~~l~~v~~d~~~~~v~v~aG~ 128 (515)
......+++.|+|.+|+++++++++++++|+.+.|+|+|.+..+.+ .+ ++||.+.+|+.++++. ..++|+||+
T Consensus 29 iGG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlLv~D~g~~~----g~vi~~~~~~~i~~~~--~~v~a~AG~ 102 (302)
T PRK14650 29 IGGISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNILINDEEEID----FPIIYTGHLNKIEIHD--NQIVAECGT 102 (302)
T ss_pred eCcEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEECCCccc----eEEEEECCcCcEEEeC--CEEEEEeCC
Confidence 4457788999999999999999999999999999999999887776 65 7889886799998753 479999999
Q ss_pred CHHHHHHHHHHhCCcceecCCCCCcccchhhhhCCCCCCccccccc-ccceEeEEEEEecCCcEEecCCCCcchhhhhhc
Q 048392 129 TNGKVYHTIAEKSKTLAFPAGVCPTVGVGGLFSGGGYGFLMRKYGL-AADNVVDAHLIDVNGRLLDRKSMGEDLFWAIRG 207 (515)
Q Consensus 129 ~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vv~~~G~~~~~~~~~~dL~~a~rg 207 (515)
.|.+|.+++.++| | .|.+..+||+| +.||+.-++.+.||. +.|.|.++++++.+|++++.. ..|+.|+||.
T Consensus 103 ~~~~l~~~~~~~g--l---~GlE~l~gIPG-TVGGAv~mNAGayG~ei~d~l~sV~~~d~~g~~~~~~--~~e~~f~YR~ 174 (302)
T PRK14650 103 NFEDLCKFALQNE--L---SGLEFIYGLPG-TLGGAIWMNARCFGNEISEILDKITFIDEKGKTICKK--FKKEEFKYKI 174 (302)
T ss_pred cHHHHHHHHHHcC--C---chhhhhcCCCc-chhHHHHhhCCccccchheeEEEEEEEECCCCEEEEE--HHHcCccccc
Confidence 9999999999995 3 78888899999 557777788888885 679999999999999998753 3599999997
Q ss_pred ccCCc-eeEEEEEEEEEEeeC
Q 048392 208 GGGAS-FGVIIAWKIKLVTVP 227 (515)
Q Consensus 208 ~~~g~-~Givt~~~~~l~~~~ 227 (515)
+.... -.||++++|+|.|..
T Consensus 175 S~f~~~~~iIl~a~f~L~~~~ 195 (302)
T PRK14650 175 SPFQNKNTFILKATLNLKKGN 195 (302)
T ss_pred ccCCCCCEEEEEEEEEEcCCC
Confidence 65322 259999999998754
No 28
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.71 E-value=4e-17 Score=162.88 Aligned_cols=163 Identities=15% Similarity=0.111 Sum_probs=136.6
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCcccCCCCCEEEEEcCCCCcEEEc-CCC--CEEEEcC
Q 048392 50 TTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSVSVD-PEA--KTAWVQA 126 (515)
Q Consensus 50 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~~~~~~~~~~~gvvIdl~~l~~v~~d-~~~--~~v~v~a 126 (515)
+.....+++.|+|++|+++++++|+++++|+.+.|+|+|....+ +.+ |++|.+ +|+.++++ .++ ..++|+|
T Consensus 17 iGG~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv~D-~~~----g~vI~~-~~~~~~~~~~~~~~~~v~a~A 90 (334)
T PRK00046 17 IDARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFTE-DFD----GTVLLN-RIKGIEVLSEDDDAWYLHVGA 90 (334)
T ss_pred cCcEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEECC-CCC----EEEEEe-cCCceEEEecCCCeEEEEEEc
Confidence 44577889999999999999999999999999999999988777 565 888887 48998773 222 3899999
Q ss_pred CCCHHHHHHHHHHhCCcceecCCCCCcccchhhhhCCCCCCccccccc-ccceEeEEEEEecC-CcEEecCCCCcchhhh
Q 048392 127 GATNGKVYHTIAEKSKTLAFPAGVCPTVGVGGLFSGGGYGFLMRKYGL-AADNVVDAHLIDVN-GRLLDRKSMGEDLFWA 204 (515)
Q Consensus 127 G~~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vv~~~-G~~~~~~~~~~dL~~a 204 (515)
|+.|.+|.+++.++| | .|.+..+||+| +.||+.-++.+.||. +.|.|.++++++.+ |++++.. ..|+.|+
T Consensus 91 G~~~~~l~~~~~~~g--l---~GlE~l~gIPG-TVGGAv~mNaGayG~ei~d~l~~V~v~d~~~g~~~~~~--~~e~~f~ 162 (334)
T PRK00046 91 GENWHDLVLWTLQQG--M---PGLENLALIPG-TVGAAPIQNIGAYGVELKDVCDYVEALDLATGEFVRLS--AAECRFG 162 (334)
T ss_pred CCcHHHHHHHHHHcC--c---hhhHHhcCCCc-chhHHHHhcCCcCcccHheeEEEEEEEECCCCcEEEEE--HHHcCcc
Confidence 999999999999985 4 78888899999 557787888888885 57999999999987 9998743 3599999
Q ss_pred hhcccCCc----eeEEEEEEEEEEee
Q 048392 205 IRGGGGAS----FGVIIAWKIKLVTV 226 (515)
Q Consensus 205 ~rg~~~g~----~Givt~~~~~l~~~ 226 (515)
||-+.... --||++++|+|.|-
T Consensus 163 YR~S~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 163 YRDSIFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred cccccCCCCCcCCEEEEEEEEEecCC
Confidence 99775432 24999999999884
No 29
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=99.67 E-value=1.9e-17 Score=116.72 Aligned_cols=47 Identities=45% Similarity=0.789 Sum_probs=34.9
Q ss_pred eecccCCCccCCCCCCCcchhhhhhhHhhhhcccHHHHHHhhhccCCCCCcccCCCCC
Q 048392 448 AYLNYRDLDIGTNNKGYTSYKQASIWGLKYFKNNFKRLVDVKTMVDPGNFFRNEQSIP 505 (515)
Q Consensus 448 ~YvNYad~~~~~~~~~~~~~~~~~~~~~~yyG~n~~RL~~IK~kyDP~nvF~~~qsI~ 505 (515)
+|+||+|.+++ ..+|.+.|||+||+||++||++|||+|||+++|+|+
T Consensus 1 aY~Ny~d~~~~-----------~~~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I~ 47 (47)
T PF08031_consen 1 AYVNYPDPDLP-----------GDDWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSIP 47 (47)
T ss_dssp --TTS--GGGG-----------SSHHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS--
T ss_pred CcccCCCCccc-----------hhHHHHHHhchhHHHHHHHHHHhCccceeCCCCCcC
Confidence 59999998865 138999999999999999999999999999999996
No 30
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.67 E-value=4e-16 Score=155.37 Aligned_cols=166 Identities=17% Similarity=0.177 Sum_probs=136.3
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCcccCCCCCEEEEEcCCCCcEEEc---CCCCEEEEcC
Q 048392 50 TTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSVSVD---PEAKTAWVQA 126 (515)
Q Consensus 50 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~~~~~~~~~~~gvvIdl~~l~~v~~d---~~~~~v~v~a 126 (515)
+.....+++.|+|.+|+++++++++++++|+.+.|+|+|.+..+.+.+ |+||.+++|+.+++. .+...++|++
T Consensus 26 IGG~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL~~D~g~~----G~VI~l~~~~~i~i~~~~~~~~~v~agA 101 (354)
T PRK14648 26 IGGAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVLIADEGVP----GLMLSLRRFRSLHTQTQRDGSVLVHAGA 101 (354)
T ss_pred eCcEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEeCCCcc----EEEEEeCCcCceEEeeccCCcEEEEEEe
Confidence 445778899999999999999999999999999999999988887776 899999779988752 2224799999
Q ss_pred CCCHHHHHHHHHHhCCcceecCCCCCcccchhhhhCCCCCCccccccc-ccceEeEEEEE--------------------
Q 048392 127 GATNGKVYHTIAEKSKTLAFPAGVCPTVGVGGLFSGGGYGFLMRKYGL-AADNVVDAHLI-------------------- 185 (515)
Q Consensus 127 G~~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vv-------------------- 185 (515)
|+.|.+|.+++.++| | .|.+..+||+| +.||+.-++.+.||. +.|.|.+++++
T Consensus 102 G~~~~~Lv~~~~~~g--l---~GlE~laGIPG-TVGGAv~mNAGAyG~ei~d~l~~V~v~d~~~~~~~~~~~~~~~~~~~ 175 (354)
T PRK14648 102 GLPVAALLAFCAHHA--L---RGLETFAGLPG-SVGGAAYMNARCYGRAIADCFHSARTLVLHPVRSRAKELPEVRKNAQ 175 (354)
T ss_pred CCcHHHHHHHHHHcC--C---cchhhhcCCCc-chhhHhhhcCCccceEhhheEEEEEEEeccCcccccccccccccccc
Confidence 999999999999985 3 78888999999 557777778888885 57999999999
Q ss_pred ecCCcE-------------EecCCCCcchhhhhhcccCCc---------eeEEEEEEEEEEeeC
Q 048392 186 DVNGRL-------------LDRKSMGEDLFWAIRGGGGAS---------FGVIIAWKIKLVTVP 227 (515)
Q Consensus 186 ~~~G~~-------------~~~~~~~~dL~~a~rg~~~g~---------~Givt~~~~~l~~~~ 227 (515)
+.+|++ ++. .+.|+.|+||-+.... --||++++|+|.|..
T Consensus 176 ~~~g~~~~~~~~~~~~~~~~~~--~~~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~~ 237 (354)
T PRK14648 176 DKRGECLGLDGGPFTCSSFQTV--FARAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGN 237 (354)
T ss_pred cCCCceecccccccccccceEe--cHHHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCCC
Confidence 456776 222 2469999999875432 239999999998753
No 31
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.55 E-value=3e-14 Score=138.24 Aligned_cols=150 Identities=17% Similarity=0.182 Sum_probs=122.8
Q ss_pred CCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCcccCCCCCEEEEEcCC-CCcEEEcCCCCEEEEcCCCCH
Q 048392 52 PKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFIN-LSSVSVDPEAKTAWVQAGATN 130 (515)
Q Consensus 52 ~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~~~~~~~~~~~gvvIdl~~-l~~v~~d~~~~~v~v~aG~~~ 130 (515)
....+++ |.|++|+++++ ++|+.+.|+|+|.+..+.+.+ ++||.+.+ ++.++++. +|+||+.|
T Consensus 19 G~A~~~~-p~~~~~l~~~~------~~p~~vlG~GSNlL~~D~g~~----g~vI~l~~~~~~~~~~~-----~a~AG~~~ 82 (273)
T PRK14651 19 GPAELWT-VETHEQLAEAT------EAPYRVLGGGSNLLVSDAGVP----ERVIRLGGEFAEWDLDG-----WVGGGVPL 82 (273)
T ss_pred ceEEEEe-cCCHHHHHHHH------CCCeEEEeceeEEEEcCCCcc----eEEEEECCcceeEeECC-----EEECCCcH
Confidence 3445566 99999999988 589999999999988877776 89898865 67666532 69999999
Q ss_pred HHHHHHHHHhCCcceecCCCCCcccchhhhhCCCCCCccccccc-ccceEeEEEEEecCCcEEecCCCCcchhhhhhccc
Q 048392 131 GKVYHTIAEKSKTLAFPAGVCPTVGVGGLFSGGGYGFLMRKYGL-AADNVVDAHLIDVNGRLLDRKSMGEDLFWAIRGGG 209 (515)
Q Consensus 131 ~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vv~~~G~~~~~~~~~~dL~~a~rg~~ 209 (515)
.+|.+++.++| | .|.+..+||+| +.||+.-++.+.||. +.|.|.++++++ +|++++.. +.|+.|+||.+.
T Consensus 83 ~~l~~~~~~~g--l---~GlE~l~gIPG-TVGGAv~mNaGayG~ei~d~l~~V~~~~-~g~~~~~~--~~e~~f~YR~S~ 153 (273)
T PRK14651 83 PGLVRRAARLG--L---SGLEGLVGIPA-QVGGAVKMNAGTRFGEMADALHTVEIVH-DGGFHQYS--PDELGFGYRHSG 153 (273)
T ss_pred HHHHHHHHHCC--C---cchhhhcCCCc-chhhHHHhhCCccccChheeEEEEEEEE-CCCEEEEE--HHHccccccccC
Confidence 99999999995 4 68888899999 557777788888885 579999999997 89998753 359999999765
Q ss_pred CCceeEEEEEEEEEEee
Q 048392 210 GASFGVIIAWKIKLVTV 226 (515)
Q Consensus 210 ~g~~Givt~~~~~l~~~ 226 (515)
...--||++++|+|.|.
T Consensus 154 ~~~~~iIl~a~f~l~~~ 170 (273)
T PRK14651 154 LPPGHVVTRVRLKLRPS 170 (273)
T ss_pred CCCCEEEEEEEEEECCC
Confidence 43324999999999874
No 32
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.49 E-value=3.7e-14 Score=138.33 Aligned_cols=127 Identities=26% Similarity=0.356 Sum_probs=109.7
Q ss_pred EEEEcCCCCcE-EEcCCCCEEEEcCCCCHHHHHHHHHHhCCcceecCCCCCcccchhhhhCCCCCCcccccccccceEeE
Q 048392 103 VIIDFINLSSV-SVDPEAKTAWVQAGATNGKVYHTIAEKSKTLAFPAGVCPTVGVGGLFSGGGYGFLMRKYGLAADNVVD 181 (515)
Q Consensus 103 vvIdl~~l~~v-~~d~~~~~v~v~aG~~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~ 181 (515)
--|++..|..| ++|.++.+|+|||+++++++.++|-+.|+.|++. ......++||++.|-|.-..|++||+..+.+.+
T Consensus 104 ~~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~-~EldDlTvGGLinG~Gies~ShkyGlfq~~~~a 182 (543)
T KOG1262|consen 104 HQVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVL-PELDDLTVGGLINGVGIESSSHKYGLFQHICTA 182 (543)
T ss_pred ccCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCceeeee-cccccceecceeeecccccccchhhhHHhhhhe
Confidence 33555555555 8999999999999999999999999996555443 445678899999999999999999999999999
Q ss_pred EEEEecCCcEEe--cCCCCcchhhhhhcccCCceeEEEEEEEEEEeeCceEE
Q 048392 182 AHLIDVNGRLLD--RKSMGEDLFWAIRGGGGASFGVIIAWKIKLVTVPEIVT 231 (515)
Q Consensus 182 ~~vv~~~G~~~~--~~~~~~dL~~a~rg~~~g~~Givt~~~~~l~~~~~~~~ 231 (515)
.|||++||++++ .+.+++|||+|+-.+. |++|..+.+++|+.|..+.+.
T Consensus 183 YEvVladGelv~~t~dne~sdLfyaiPWSq-GTlgfLVaatiriIkvK~Yvk 233 (543)
T KOG1262|consen 183 YEVVLADGELVRVTPDNEHSDLFYAIPWSQ-GTLGFLVAATIRIIKVKKYVK 233 (543)
T ss_pred eEEEecCCeEEEecCCcccCceEEEccccc-CchheeeeeEEEEEeccceEE
Confidence 999999999996 4457899999999999 899999999999999988544
No 33
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.27 E-value=1.5e-11 Score=118.43 Aligned_cols=145 Identities=17% Similarity=0.169 Sum_probs=114.7
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCcccCCCCCEEEEEcCCCCcEEEcCCCCEEEEcCCCC
Q 048392 50 TTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTAWVQAGAT 129 (515)
Q Consensus 50 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~~~~~~~~~~~gvvIdl~~l~~v~~d~~~~~v~v~aG~~ 129 (515)
+-....+++.|.+.+ + ++|+.+.|+|+|.+..+.+.+ +++ -+++|+.++++. .+++|+||+.
T Consensus 15 iGG~A~~~~~~~~~~-l----------~~p~~vlG~GSNlLv~D~g~~----~vv-~~~~~~~~~~~~--~~v~~~AG~~ 76 (257)
T PRK13904 15 IGPPLEVLVLEEIDD-F----------SQDGQIIGGANNLLISPNPKN----LAI-LGKNFDYIKIDG--ECLEIGGATK 76 (257)
T ss_pred ECceEEEEEEechhh-h----------CCCeEEEeceeEEEEecCCcc----EEE-EccCcCeEEEeC--CEEEEEcCCc
Confidence 334666778888887 6 899999999999887776644 555 345688888743 5899999999
Q ss_pred HHHHHHHHHHhCCcceecCCCCCcccchhhhhCCCCCCccccccc-ccceEeEEEEEecCCcEEecCCCCcchhhhhhcc
Q 048392 130 NGKVYHTIAEKSKTLAFPAGVCPTVGVGGLFSGGGYGFLMRKYGL-AADNVVDAHLIDVNGRLLDRKSMGEDLFWAIRGG 208 (515)
Q Consensus 130 ~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vv~~~G~~~~~~~~~~dL~~a~rg~ 208 (515)
|.+|.+++.++| | .|.+..+||+| +.||+.-++.+.||. +.|.|.++++++ |+ + ...|+.|+||.+
T Consensus 77 l~~l~~~~~~~g--l---~GlE~l~gIPG-tVGGAv~mNaGa~g~ei~d~l~~V~~~~--~~-~----~~~e~~f~YR~S 143 (257)
T PRK13904 77 SGKIFNYAKKNN--L---GGFEFLGKLPG-TLGGLVKMNAGLKEYEISNNLESICTNG--GW-I----EKEDIGFGYRSS 143 (257)
T ss_pred HHHHHHHHHHCC--C---chhhhhcCCCc-cHHHHHHhcCCcCccchheeEEEEEEEe--eE-E----eHHHCcccccCc
Confidence 999999999995 3 78888889999 557777778888885 579999999998 42 2 245999999976
Q ss_pred cCCceeEEEEEEEEEEeeC
Q 048392 209 GGASFGVIIAWKIKLVTVP 227 (515)
Q Consensus 209 ~~g~~Givt~~~~~l~~~~ 227 (515)
... .||++++|||.|..
T Consensus 144 ~~~--~iIl~a~f~l~~~~ 160 (257)
T PRK13904 144 GIN--GVILEARFKKTHGF 160 (257)
T ss_pred CCC--cEEEEEEEEECCCC
Confidence 532 59999999999854
No 34
>PRK09799 putative oxidoreductase; Provisional
Probab=96.08 E-value=0.02 Score=55.98 Aligned_cols=139 Identities=14% Similarity=0.079 Sum_probs=83.1
Q ss_pred EEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCcccCCCCCEEEEEcCCCCcE-EEcCCCCEEEEcCCCCHHHHH
Q 048392 56 VIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSV-SVDPEAKTAWVQAGATNGKVY 134 (515)
Q Consensus 56 ~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~~~~~~~~~~~gvvIdl~~l~~v-~~d~~~~~v~v~aG~~~~~l~ 134 (515)
.+..|+|.+|+.++++ +++-...+.+||+.+.... ... +..++||++++ .. .+..+++.+++|+++++.++.
T Consensus 4 ~y~~P~sl~Ea~~ll~---~~~~~a~ilAGGT~L~~~~-~~~--~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~ 76 (258)
T PRK09799 4 QFFRPDSVEQALELKR---RYQDEAVWFAGGSKLNATP-TRT--DKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLR 76 (258)
T ss_pred cEeCCCCHHHHHHHHH---hCCCCCEEEecCCChHhhh-CCC--CCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHH
Confidence 4689999999988766 3433467899999974321 111 23689999975 44 344466899999999999998
Q ss_pred HHH------HHhCCcceec-CCCCCcccchhhhhCCCCCCcccccccccce-----EeEEEEEecCCcEEecCCCCcchh
Q 048392 135 HTI------AEKSKTLAFP-AGVCPTVGVGGLFSGGGYGFLMRKYGLAADN-----VVDAHLIDVNGRLLDRKSMGEDLF 202 (515)
Q Consensus 135 ~~l------~~~g~~l~~~-~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~-----v~~~~vv~~~G~~~~~~~~~~dL~ 202 (515)
+.. .+.- ..+- ...-+..+|||.+..+.- .+|. .+..+|+..+++.+.. .|+|
T Consensus 77 ~~~~~~~~L~~a~--~~vas~qIRN~aTiGGNl~~a~p---------~sD~~p~LlAldA~v~l~~~r~vpl----~~f~ 141 (258)
T PRK09799 77 DARFIPAALREAL--GFVYSRHLRNQSTIGGEIAARQE---------ESVLLPVLLALDAELVFGNGETLSI----EDYL 141 (258)
T ss_pred hCcccHHHHHHHH--HHhCCHHHhccchhHHHhhcCCc---------cHHHHHHHHHcCCEEEEecCcEEeH----HHhc
Confidence 632 2210 0011 123356778888875421 1232 2455666666644322 2443
Q ss_pred hhhhcccCCceeEEEEEEEE
Q 048392 203 WAIRGGGGASFGVIIAWKIK 222 (515)
Q Consensus 203 ~a~rg~~~g~~Givt~~~~~ 222 (515)
.|.. -.|||++.+.
T Consensus 142 ---~g~~---~Eil~~I~iP 155 (258)
T PRK09799 142 ---ACPC---DRLLTEIIIP 155 (258)
T ss_pred ---CCCC---CcEEEEEEcC
Confidence 3222 2588888764
No 35
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=96.02 E-value=0.0029 Score=57.89 Aligned_cols=104 Identities=15% Similarity=0.248 Sum_probs=61.9
Q ss_pred ccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCC-CCcccCCCCCEEEEEcCCCCcE-EEcCCCCEEEEcCCCCHH
Q 048392 54 PQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEG-LSYVSNYHVPFVIIDFINLSSV-SVDPEAKTAWVQAGATNG 131 (515)
Q Consensus 54 p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~-~~~~~~~~~~gvvIdl~~l~~v-~~d~~~~~v~v~aG~~~~ 131 (515)
+..+++|+|.+|+.++++ .+-...+.+||+.... ...+.. ....+||++++..+ .|..+++.+++||++++.
T Consensus 2 ~~~~~~P~sl~ea~~ll~----~~~~a~~vaGgT~l~~~~~~~~~--~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~ 75 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA----KGPDARIVAGGTDLGVQMREGIL--SPDVLIDLSRIPELNGISEDDGGLRIGAAVTLS 75 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH----HGTTEEEESS-TTHHHHHHTTS-----SEEEEGTTSGGGG-EEEETSEEEEETTSBHH
T ss_pred CeEEEccCCHHHHHHHHh----cCCCCEEEeCCCccchhcccCcc--ccceEEEeEEecccccEEEeccEEEECCCccHH
Confidence 345799999999999998 2235789999998532 111100 12589999876443 333347899999999999
Q ss_pred HHHHH---------HHHhCCcceecCCCCCcccchhhhhCCC
Q 048392 132 KVYHT---------IAEKSKTLAFPAGVCPTVGVGGLFSGGG 164 (515)
Q Consensus 132 ~l~~~---------l~~~g~~l~~~~g~~~~vgigG~~~ggg 164 (515)
++.+. |.++-... -....-+..++||.+..+.
T Consensus 76 ~l~~~~~~~~~~p~L~~~~~~i-as~~IRn~aTiGGNl~~~~ 116 (171)
T PF00941_consen 76 ELEESPLIQQYFPALAQAARRI-ASPQIRNRATIGGNLCNAS 116 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTS-S-HHHHTT-BHHHHHHHTB
T ss_pred HHhhcchhhhhHHHHHHHHHHh-CCHhHeeeeeeccccccCc
Confidence 99876 22210000 0012225678999885544
No 36
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=95.35 E-value=0.045 Score=53.49 Aligned_cols=100 Identities=11% Similarity=0.099 Sum_probs=62.7
Q ss_pred EEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCcccCCCCCEEEEEcCCCCcE-EEcCCCCEEEEcCCCCHHHHHH
Q 048392 57 IVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSV-SVDPEAKTAWVQAGATNGKVYH 135 (515)
Q Consensus 57 vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~~~~~~~~~~~gvvIdl~~l~~v-~~d~~~~~v~v~aG~~~~~l~~ 135 (515)
++.|+|.+|+.++++ +++-.-.+.+||+++...-... +..++||++++ .. .|..+++.+++|+++++.++.+
T Consensus 4 y~~P~sl~Ea~~ll~---~~~~~a~~lAGGTdL~~~~~~~---~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~ 76 (257)
T TIGR03312 4 FFRPESTIQALELKK---RHTGVAVWFAGGSKLNATPTRT---DKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLID 76 (257)
T ss_pred eECCCCHHHHHHHHH---hCCCCCEEEecCcchhhhhccc---CCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHh
Confidence 578999999988766 3332357789999974221111 13588999875 43 3444567999999999999875
Q ss_pred H------HHHhCCcceecCCCCCcccchhhhhCCC
Q 048392 136 T------IAEKSKTLAFPAGVCPTVGVGGLFSGGG 164 (515)
Q Consensus 136 ~------l~~~g~~l~~~~g~~~~vgigG~~~ggg 164 (515)
. |.+.- ...-....-+..++||.+..+.
T Consensus 77 ~~~~~~~L~~aa-~~va~~qIRN~gTlGGNl~~a~ 110 (257)
T TIGR03312 77 NELTPAALKEAL-GFVYSRHIRNQATIGGEIAAFQ 110 (257)
T ss_pred CcchHHHHHHHH-HHhCCHHHhccccHHHHhhcCC
Confidence 2 22220 0000113345678999887543
No 37
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=95.32 E-value=0.09 Score=51.58 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=25.9
Q ss_pred hhhHhhhhcccHHHHHHhhhccCCCCCcccCCCCC
Q 048392 471 SIWGLKYFKNNFKRLVDVKTMVDPGNFFRNEQSIP 505 (515)
Q Consensus 471 ~~~~~~yyG~n~~RL~~IK~kyDP~nvF~~~qsI~ 505 (515)
++|. ..||++|+|+++.|++|||.+++.-.|.|.
T Consensus 248 ~dW~-~HFG~~W~~f~~~K~~yDP~~IL~PGq~IF 281 (281)
T PF09265_consen 248 EDWR-RHFGPKWERFVERKRRYDPKAILAPGQGIF 281 (281)
T ss_dssp HHHH-HHHGHHHHHHHHHHHHH-TT--B-GGG-SS
T ss_pred HHHH-HHhchHHHHHHHHHHhCCchhhcCCCCCCC
Confidence 4895 678999999999999999999999999874
No 38
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=94.13 E-value=0.11 Score=50.01 Aligned_cols=47 Identities=21% Similarity=0.191 Sum_probs=32.8
Q ss_pred hccccCCCCCceecccCCCccCCCCCCCcchhhhhhhHhhhhcccHHHHHHhhhccCCCCCcccC
Q 048392 437 VAPYVSKNPRAAYLNYRDLDIGTNNKGYTSYKQASIWGLKYFKNNFKRLVDVKTMVDPGNFFRNE 501 (515)
Q Consensus 437 l~~~~~~~~~g~YvNYad~~~~~~~~~~~~~~~~~~~~~~yyG~n~~RL~~IK~kyDP~nvF~~~ 501 (515)
+.++.+.+++|..=|....+ ....| .++.+..+||+++||+++|.++
T Consensus 151 l~kygGRPHWGK~h~l~~~~----------------l~~lY--Pr~~dFlavR~~lDP~G~F~N~ 197 (257)
T PLN00107 151 ILKYGALPHWGKNRNAAFDG----------------AIAKY--KKAGEFLKVKERLDPEGLFSSE 197 (257)
T ss_pred HHhcCCcCCchhccCCCHHH----------------HHHHC--cCHHHHHHHHHHhCCCCccCCH
Confidence 55664445566654444332 33455 6899999999999999999864
No 39
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=92.26 E-value=0.36 Score=51.45 Aligned_cols=153 Identities=15% Similarity=0.109 Sum_probs=87.7
Q ss_pred CccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCC-CcccCCCCCEEEEEcCCCCcE-EEcCCCCEEEEcCCCCH
Q 048392 53 KPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGL-SYVSNYHVPFVIIDFINLSSV-SVDPEAKTAWVQAGATN 130 (515)
Q Consensus 53 ~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~~-~~~~~~~~~gvvIdl~~l~~v-~~d~~~~~v~v~aG~~~ 130 (515)
...-+++|+|.+|+.++++- +. ...+.+||+++... ..... +...+||++++..+ .|..+++.+++||++++
T Consensus 191 ~~~~~~~P~sl~Ea~~ll~~---~~-~a~lvAGGTdl~~~~~~~~~--~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~ 264 (467)
T TIGR02963 191 GGERFIAPTTLDDLAALKAA---HP-DARIVAGSTDVGLWVTKQMR--DLPDVIYVGQVAELKRIEETDDGIEIGAAVTL 264 (467)
T ss_pred CCceEECCCCHHHHHHHHhh---CC-CCEEEecCcchHHHHhcCCC--CCCeEEECCCChhhccEEEcCCEEEEecCCcH
Confidence 34568999999999988763 32 35789999986321 11111 23688999876544 34445678999999999
Q ss_pred HHHHHHHHHhCCcc----eecC--CCCCcccchhhhhCCCCCCcccccccccceE-----e--EEEEEecCCcEEecCCC
Q 048392 131 GKVYHTIAEKSKTL----AFPA--GVCPTVGVGGLFSGGGYGFLMRKYGLAADNV-----V--DAHLIDVNGRLLDRKSM 197 (515)
Q Consensus 131 ~~l~~~l~~~g~~l----~~~~--g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v-----~--~~~vv~~~G~~~~~~~~ 197 (515)
.++.+.+.++--.| ...+ ..-+..+|||.+..+.. ..|.. + .+++...+|+.... -
T Consensus 265 ~el~~~l~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~asP---------~sD~~p~LlALdA~v~l~~~~G~R~vp-l- 333 (467)
T TIGR02963 265 TDAYAALAKRYPELGELLRRFASLQIRNAGTLGGNIANGSP---------IGDSPPALIALGARLTLRKGEGRRTLP-L- 333 (467)
T ss_pred HHHHHHHHHHhHHHHHHHHHhCCHHHcCceecccccccCCC---------chHHHHHHHHcCCEEEEEcCCCcEEEe-H-
Confidence 99987665431000 0011 23456778888765432 13322 2 33444556642211 1
Q ss_pred CcchhhhhhcccCCceeEEEEEEEEE
Q 048392 198 GEDLFWAIRGGGGASFGVIIAWKIKL 223 (515)
Q Consensus 198 ~~dL~~a~rg~~~g~~Givt~~~~~l 223 (515)
.|+|-.++--....--||+++.+..
T Consensus 334 -~dF~~g~~kt~L~~~EiI~~I~iP~ 358 (467)
T TIGR02963 334 -EDFFIDYGKTDRQPGEFVEALHVPR 358 (467)
T ss_pred -HHhhcccccccCCCCceEEEEEecC
Confidence 2555443321111224999888763
No 40
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=90.49 E-value=0.46 Score=47.94 Aligned_cols=101 Identities=17% Similarity=0.189 Sum_probs=62.1
Q ss_pred EEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCC-CCcccCCCCCEEEEEcCCCCcE-EEcCCCCEEEEcCCCCHHHH
Q 048392 56 VIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEG-LSYVSNYHVPFVIIDFINLSSV-SVDPEAKTAWVQAGATNGKV 133 (515)
Q Consensus 56 ~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~-~~~~~~~~~~gvvIdl~~l~~v-~~d~~~~~v~v~aG~~~~~l 133 (515)
-++.|+|.+|..++++- ++ .-.+.+||+++.. .-.+.. ....+||++++..+ .|..+++.+++|+++++.++
T Consensus 6 ~~~~P~sl~eA~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~--~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~l 79 (321)
T TIGR03195 6 RTLRPASLADAVAALAA---HP-AARPLAGGTDLLPNLRRGLG--QPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAAL 79 (321)
T ss_pred eEECCCCHHHHHHHHhh---CC-CCEEEEccchHHHHHhcccC--CCCeEEECCCChhhccEEecCCEEEEeccCcHHHH
Confidence 46899999999887763 22 2468999998532 111111 23688999875443 23344678999999999998
Q ss_pred HHH---------HHHhCCcceecCCCCCcccchhhhhCC
Q 048392 134 YHT---------IAEKSKTLAFPAGVCPTVGVGGLFSGG 163 (515)
Q Consensus 134 ~~~---------l~~~g~~l~~~~g~~~~vgigG~~~gg 163 (515)
.+. |.+.- ...-....-+..+|||.+...
T Consensus 80 ~~~~~i~~~~p~L~~a~-~~ias~qIRN~aTiGGNi~~~ 117 (321)
T TIGR03195 80 AEDALVRTRWPALAQAA-RAVAGPTHRAAATLGGNLCLD 117 (321)
T ss_pred hhChhhHhHhHHHHHHH-HHhCCHHHhCceecHHhhhcc
Confidence 642 22210 000011233567899998853
No 41
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=90.18 E-value=0.45 Score=47.44 Aligned_cols=103 Identities=13% Similarity=0.141 Sum_probs=63.1
Q ss_pred EEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCC-CCcccCCCCCEEEEEcCCCCcE-EEc-CCCCEEEEcCCCCHHH
Q 048392 56 VIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEG-LSYVSNYHVPFVIIDFINLSSV-SVD-PEAKTAWVQAGATNGK 132 (515)
Q Consensus 56 ~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~-~~~~~~~~~~gvvIdl~~l~~v-~~d-~~~~~v~v~aG~~~~~ 132 (515)
-++.|+|.+|+.++++. +. ...+.+||+++.. ...+.. +...+||++++... .|. .+++.+++|+++++.+
T Consensus 6 ~~~~P~sl~Ea~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~--~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~ 79 (291)
T PRK09971 6 EYHEAATLEEAIELLAD---NP-QAKLIAGGTDVLIQLHHHND--RYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQ 79 (291)
T ss_pred ceeCCCCHHHHHHHHHh---CC-CCEEEeccchHHHHHhCCCC--CCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHH
Confidence 57899999999888764 22 3578999998632 111111 23688999876543 333 2446799999999999
Q ss_pred HHH--HHHHhCCc----ce-e-cCCCCCcccchhhhhCCC
Q 048392 133 VYH--TIAEKSKT----LA-F-PAGVCPTVGVGGLFSGGG 164 (515)
Q Consensus 133 l~~--~l~~~g~~----l~-~-~~g~~~~vgigG~~~ggg 164 (515)
+.+ .+.+.-.. +. + .+..-+..+|||.+..+.
T Consensus 80 l~~~~~i~~~~p~L~~a~~~ia~~qIRN~aTiGGNi~~a~ 119 (291)
T PRK09971 80 IIEDPIIQKHLPALAEAAVSIGGPQIRNVATIGGNICNGA 119 (291)
T ss_pred HhcChHHHHHhHHHHHHHHHhCCHHHhcceecccccccCC
Confidence 985 12111000 00 0 113345677888886543
No 42
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=89.80 E-value=0.58 Score=44.79 Aligned_cols=109 Identities=12% Similarity=0.173 Sum_probs=58.6
Q ss_pred CCCHHHHHHHHHHHHhcCC--ceeEEEEEecCCccCCCCCCCCCCcccCCCeEEEEEEEEeCCCChhhhHHHHHHHHHHH
Q 048392 357 PMPEIAFQGIYERFYEKEA--EAAEMILSPYGGVMNQISDSATPFPHRAGTRYKIQHIVYWEEEGSEASQRHISWIRRLY 434 (515)
Q Consensus 357 ~~~~~~~~~l~~~~~~~~~--~~~~i~~~~~GGai~~v~~~~tAf~~Rd~~~~~~~~~~~W~~~~~~~~~~~~~w~~~~~ 434 (515)
.++.+.+.++++.+.+.-. ......+.+.| ++ ..++.+. ++....+..+...++++++.
T Consensus 134 ~vp~~~l~~~~~~~~~~~~~~~~~~~~~gH~~----------------~g-~~h~~~~--~~~~~~~~~~~~~~~~~~~~ 194 (248)
T PF02913_consen 134 AVPPSRLPEFLREIRALLREYGLEVCHFGHAG----------------DG-NLHLYIL--FDPRDPEEPERAEALWDELY 194 (248)
T ss_dssp ESCHHHHHHHHHHHHHHHHHCTEEEEEEEEEE----------------EC-EEEEEEE--EETTSHHHHHHHHHHHHHHH
T ss_pred cccchhhhhHHHhhhhhhhhccccccceEEcc----------------CC-eEEEEee--cccchHHHHHHHHHHHHHHH
Confidence 4677888888887776421 11222222222 22 3343333 33222245567778888887
Q ss_pred HhhccccCCCCCceecccCCCccCCCCCCCcchhhhhhhHhhhhcc-cHHHHHHhhhccCCCCCccc
Q 048392 435 DYVAPYVSKNPRAAYLNYRDLDIGTNNKGYTSYKQASIWGLKYFKN-NFKRLVDVKTMVDPGNFFRN 500 (515)
Q Consensus 435 ~~l~~~~~~~~~g~YvNYad~~~~~~~~~~~~~~~~~~~~~~yyG~-n~~RL~~IK~kyDP~nvF~~ 500 (515)
+.+..+. |.- --.+.. + .....|....+|+ .+.-+++||+.+||+|+++-
T Consensus 195 ~~~~~~g-----G~i-s~eHG~-G---------~~k~~~~~~~~~~~~~~~~~~iK~~~DP~~ilNP 245 (248)
T PF02913_consen 195 ELVLELG-----GSI-SAEHGI-G---------KLKKPYLEEEYGPAALRLMRAIKQAFDPNGILNP 245 (248)
T ss_dssp HHHHHTT------BB-SSSSGG-G---------HHHHHHHCHHCHHHHHHHHHHHHHHH-TTS-BST
T ss_pred HHHHhcc-----ccc-ccccch-h---------hhhHHHHHHhcchHHHHHHHHhhhccCCccCCCC
Confidence 7666552 211 111111 1 0123465566665 79999999999999999874
No 43
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=88.63 E-value=0.34 Score=47.39 Aligned_cols=58 Identities=16% Similarity=0.235 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhccccCCCCCceecccCCCccCCCCCCCcchhhhhhhHhhhhcccHHHHHHhhhccCCCCCcccC
Q 048392 426 HISWIRRLYDYVAPYVSKNPRAAYLNYRDLDIGTNNKGYTSYKQASIWGLKYFKNNFKRLVDVKTMVDPGNFFRNE 501 (515)
Q Consensus 426 ~~~w~~~~~~~l~~~~~~~~~g~YvNYad~~~~~~~~~~~~~~~~~~~~~~yyG~n~~RL~~IK~kyDP~nvF~~~ 501 (515)
..+|.+.+.+.+..+.+..++|.+-. .. .....+.| +++++..++|+++||+|+|.++
T Consensus 197 ~~~~~~~~e~~~~~~ggRpHWgK~~~-~~---------------~~~l~~~Y--p~~~~F~~~r~~~DP~g~F~n~ 254 (259)
T PF04030_consen 197 YEEFFRAFEQILRKYGGRPHWGKNHT-LT---------------AEQLRKLY--PRLDDFLAVRKKLDPQGVFLND 254 (259)
T ss_dssp HHHHHHHHHHHHGGGT-EE-TTS---------------------HHHHHHT---TTHHHHHHHHHHH-TT-TT--H
T ss_pred HHHHHHHHHHHHHHcCCEECcCcCCC-CC---------------HHHHHHHC--cCHHHHHHHHHHhCCCCCCCCH
Confidence 56666666656665533233333211 11 11334444 8999999999999999999763
No 44
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=87.84 E-value=0.72 Score=45.33 Aligned_cols=97 Identities=10% Similarity=0.103 Sum_probs=60.5
Q ss_pred cCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCC-Ccc-cCCCCCEEEEEcCCCCcE-EEcCCCCEEEEcCCCCHHHHHHH
Q 048392 60 PVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGL-SYV-SNYHVPFVIIDFINLSSV-SVDPEAKTAWVQAGATNGKVYHT 136 (515)
Q Consensus 60 p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~~-~~~-~~~~~~gvvIdl~~l~~v-~~d~~~~~v~v~aG~~~~~l~~~ 136 (515)
|+|.+|+.++++- +. ...+.+||+.+... ... .. ....+||++++..+ .|..+++.+++|+++++.++.+.
T Consensus 1 P~sl~ea~~ll~~---~~-~a~ivaGgT~l~~~~~~~~~~--~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~~ 74 (264)
T TIGR03199 1 PAALDEAWSLLEK---AP-DSTFVSGSTLLQLQWEKGTLP--MKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKN 74 (264)
T ss_pred CCCHHHHHHHHHh---CC-CCEEEEccChHHHHHhcCcCC--CCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhhC
Confidence 7888888888774 22 35789999986321 111 01 13688999886655 45556789999999999999642
Q ss_pred ---------HHHhCCcceecCCCCCcccchhhhhCC
Q 048392 137 ---------IAEKSKTLAFPAGVCPTVGVGGLFSGG 163 (515)
Q Consensus 137 ---------l~~~g~~l~~~~g~~~~vgigG~~~gg 163 (515)
|.+.- ...-....-+..++||.+..+
T Consensus 75 ~~i~~~~p~L~~a~-~~ia~~qIRN~aTlGGNl~~~ 109 (264)
T TIGR03199 75 PLIKRALPCFVDAA-SAIAAPGVRNRATIGGNIASG 109 (264)
T ss_pred hHhHhHhHHHHHHH-HHhcCHHHhcceecHHhccCc
Confidence 11110 000001233567899988654
No 45
>PLN00192 aldehyde oxidase
Probab=83.31 E-value=2.6 Score=50.88 Aligned_cols=107 Identities=19% Similarity=0.170 Sum_probs=67.2
Q ss_pred ccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCcccCCCCCEEEEEcCCCCcE-EEcCCCCEEEEcCCCCHHH
Q 048392 54 PQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSV-SVDPEAKTAWVQAGATNGK 132 (515)
Q Consensus 54 p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~~~~~~~~~~~gvvIdl~~l~~v-~~d~~~~~v~v~aG~~~~~ 132 (515)
..-.+.|.|.+|+.++++-....+-.-.+..||+++...-. .. ...++||++++..+ .|..+++.+++||++++.+
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~k~-~~--~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~e 309 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYYKD-EE--LYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISK 309 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceeeec-cC--CCCeEEEcCCChhhhcEEecCCEEEEeecCcHHH
Confidence 45689999999998887642100123677889998632211 21 23689999875554 3444567999999999999
Q ss_pred HHHHHHHhCCc----------ce-ec-CCCCCcccchhhhhCC
Q 048392 133 VYHTIAEKSKT----------LA-FP-AGVCPTVGVGGLFSGG 163 (515)
Q Consensus 133 l~~~l~~~g~~----------l~-~~-~g~~~~vgigG~~~gg 163 (515)
+...+...... +. +- ...-+..+|||.+..+
T Consensus 310 l~~~l~~~~~~~~~~p~L~~~~~~vAs~qIRN~aTlGGNI~~A 352 (1344)
T PLN00192 310 AIEALREESKSEYVFKKIADHMEKIASRFVRNTGSIGGNLVMA 352 (1344)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhcChhhccceechhhhccc
Confidence 98765543100 00 00 1233566788888654
No 46
>PLN02906 xanthine dehydrogenase
Probab=83.12 E-value=1.7 Score=52.34 Aligned_cols=79 Identities=9% Similarity=0.083 Sum_probs=55.3
Q ss_pred cEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCC-CcccCCCCCEEEEEcCCCCcE-EEcCCCCEEEEcCCCCHHH
Q 048392 55 QVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGL-SYVSNYHVPFVIIDFINLSSV-SVDPEAKTAWVQAGATNGK 132 (515)
Q Consensus 55 ~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~~-~~~~~~~~~gvvIdl~~l~~v-~~d~~~~~v~v~aG~~~~~ 132 (515)
..++.|+|.+|+.++++- +. .-++.+||+++... ..... +..++||++++..+ .|..++..+++||++++.+
T Consensus 229 ~~~~~P~tl~ea~~ll~~---~~-~a~ivAGGTdl~~~~~~~~~--~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~e 302 (1319)
T PLN02906 229 LTWYRPTSLQHLLELKAE---YP-DAKLVVGNTEVGIEMRFKNA--QYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSE 302 (1319)
T ss_pred ceEECcCCHHHHHHHHHh---CC-CCEEEEcCchhHHHhhhccC--CCCeEEECCCChhhhcEEecCCEEEEecCCcHHH
Confidence 458999999999987664 22 24788999997321 11111 23689999876554 3444567899999999999
Q ss_pred HHHHHHH
Q 048392 133 VYHTIAE 139 (515)
Q Consensus 133 l~~~l~~ 139 (515)
+.+.|.+
T Consensus 303 l~~~l~~ 309 (1319)
T PLN02906 303 LQNLFRK 309 (1319)
T ss_pred HHHHHHH
Confidence 9986544
No 47
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=82.82 E-value=2.8 Score=42.38 Aligned_cols=141 Identities=17% Similarity=0.117 Sum_probs=82.2
Q ss_pred CccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCcccCCCCCEEEEEcCCCCcE-EEcCCCCEEEEcCCCCHH
Q 048392 53 KPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSV-SVDPEAKTAWVQAGATNG 131 (515)
Q Consensus 53 ~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~~~~~~~~~~~gvvIdl~~l~~v-~~d~~~~~v~v~aG~~~~ 131 (515)
.-..++.|.+.+|+..++.. +-..++..|++.+.-.....-. +-..+|-+..+..+ +|+...+.+++++|+++.
T Consensus 202 ~~~r~~~P~~l~D~a~l~aa----~P~AtivAGsTDvgLwVtk~mr-~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~t 276 (493)
T COG4630 202 GDDRFIVPATLADFADLLAA----HPGATIVAGSTDVGLWVTKQMR-DLNPVIFVGHLAELRRIEVSTGGLEIGAGVTYT 276 (493)
T ss_pred CCceeEeeccHHHHHHHHhh----CCCCEEEecCcchhhHHHHHHh-hcCCeEEecchhhhheeeecCCcEEEccCccHH
Confidence 45568999999999888653 4456777888875322111100 01244444555444 455567899999999999
Q ss_pred HHHHHHHHhCCcce--e-cCCCC---CcccchhhhhCCCCCCcccccccc--cceEeEEEEEecCCcEEe-cCCCCcchh
Q 048392 132 KVYHTIAEKSKTLA--F-PAGVC---PTVGVGGLFSGGGYGFLMRKYGLA--ADNVVDAHLIDVNGRLLD-RKSMGEDLF 202 (515)
Q Consensus 132 ~l~~~l~~~g~~l~--~-~~g~~---~~vgigG~~~ggg~g~~~~~~G~~--~d~v~~~~vv~~~G~~~~-~~~~~~dL~ 202 (515)
+.++.|.+.=-.|. + -.|.. +.-++||.+..|.- -|-+ .=..++.++++-.|+-.+ ..- .|+|
T Consensus 277 ~a~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangSP------IGDtPPaLIALgA~ltLr~g~~~RtlPL--e~~F 348 (493)
T COG4630 277 QAYRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGSP------IGDTPPALIALGATLTLRSGDGRRTLPL--EDYF 348 (493)
T ss_pred HHHHHHHhhCchHHHHHHHhcchhhhccccccccccCCCc------CCCCCchhhhcCcEEEEEecCCcccccH--HHHH
Confidence 99999987510000 0 01222 34456776655431 1211 123477778777665543 222 3788
Q ss_pred hhhh
Q 048392 203 WAIR 206 (515)
Q Consensus 203 ~a~r 206 (515)
-+|+
T Consensus 349 i~Y~ 352 (493)
T COG4630 349 IAYG 352 (493)
T ss_pred HHhh
Confidence 8775
No 48
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=79.96 E-value=2.5 Score=44.45 Aligned_cols=30 Identities=17% Similarity=0.328 Sum_probs=25.1
Q ss_pred hhhHhhhhc-ccHHHHHHhhhccCCCCCccc
Q 048392 471 SIWGLKYFK-NNFKRLVDVKTMVDPGNFFRN 500 (515)
Q Consensus 471 ~~~~~~yyG-~n~~RL~~IK~kyDP~nvF~~ 500 (515)
+.|....|| ..++-+++||+.+||+|+++-
T Consensus 381 ~~~~~~~~~~~~~~~~~~iK~~fDP~~ilNP 411 (413)
T TIGR00387 381 AEFMPYKFNEKELETMRAIKKAFDPDNILNP 411 (413)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHcCcCcCCCC
Confidence 357777777 579999999999999999874
No 49
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=79.83 E-value=4.1 Score=49.19 Aligned_cols=78 Identities=19% Similarity=0.178 Sum_probs=55.2
Q ss_pred cEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCC-CCcccCCCCCEEEEEcCCCCcE-EEcCCCCEEEEcCCCCHHH
Q 048392 55 QVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEG-LSYVSNYHVPFVIIDFINLSSV-SVDPEAKTAWVQAGATNGK 132 (515)
Q Consensus 55 ~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~-~~~~~~~~~~gvvIdl~~l~~v-~~d~~~~~v~v~aG~~~~~ 132 (515)
...+.|.|.+|+.++++- +. .-++.+||+++.. ...... +...+||++++..+ .|..+++.+++||++++.+
T Consensus 237 ~~~~~P~tl~ea~~ll~~---~~-~a~lvAGGTdl~~~~k~~~~--~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~e 310 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFK---YP-QAPVVMGNTSVGPEVKFKGV--FHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQ 310 (1330)
T ss_pred ceEECCCCHHHHHHHHHh---CC-CCEEEecCcchHHHhhhccC--CCCeEEECCCChhhhcEEEcCCEEEEeccccHHH
Confidence 468999999999988764 22 3577899999732 111111 12588999876554 3444567999999999999
Q ss_pred HHHHHH
Q 048392 133 VYHTIA 138 (515)
Q Consensus 133 l~~~l~ 138 (515)
+.+.|.
T Consensus 311 l~~~l~ 316 (1330)
T TIGR02969 311 VKDILA 316 (1330)
T ss_pred HHHHHH
Confidence 998654
No 50
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=73.66 E-value=10 Score=37.58 Aligned_cols=75 Identities=15% Similarity=0.120 Sum_probs=52.3
Q ss_pred ccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCC-CCcccCCCCCEEEEEcCCCC-cE-EEcCCCCEEEEcCCCCH
Q 048392 54 PQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEG-LSYVSNYHVPFVIIDFINLS-SV-SVDPEAKTAWVQAGATN 130 (515)
Q Consensus 54 p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~-~~~~~~~~~~gvvIdl~~l~-~v-~~d~~~~~v~v~aG~~~ 130 (515)
+-.+++|.|.+|...+++ +.+ --.+.+|||++.. .-.... .+.-+||++++. .. .+..+++.+++||-+++
T Consensus 3 ~f~y~rp~Sv~eA~~ll~---~~~-~a~~laGGt~L~~~~k~~~~--~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~ 76 (284)
T COG1319 3 NFEYYRPASVEEALNLLA---RAP-DAKYLAGGTDLLPLMKLGIE--RPDHLVDINGLDELLGIVTTEGGSLRIGALVTL 76 (284)
T ss_pred ceEEECCCCHHHHHHHHH---hCC-CcEEeeCcchHHHHhhcccC--CcceEEEecCChhhhceEeecCCEEEEeecccH
Confidence 456789999998877776 444 5789999999753 111111 135778998874 22 33346778999999999
Q ss_pred HHHH
Q 048392 131 GKVY 134 (515)
Q Consensus 131 ~~l~ 134 (515)
.++.
T Consensus 77 ~ei~ 80 (284)
T COG1319 77 TEIA 80 (284)
T ss_pred HHHH
Confidence 9986
No 51
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=65.23 E-value=25 Score=34.36 Aligned_cols=93 Identities=14% Similarity=0.031 Sum_probs=59.4
Q ss_pred cceEecCCCCCchhHHhhcccccCCCCCCCCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCcccCCCCC
Q 048392 22 SKLIYTRTNSSFSSILDFSIQNLRFSTPTTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVP 101 (515)
Q Consensus 22 ~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~~~~~~~~~~~ 101 (515)
...|++||-++...+.. . ....+.+|+.++-+...+.|.+-.+.=|||... ...
T Consensus 132 ~a~vvTPNl~EA~~L~g--------------~----~~i~~~~d~~~a~~~i~~~g~~~VliKGGH~~~---~~~----- 185 (263)
T COG0351 132 LATVVTPNLPEAEALSG--------------L----PKIKTEEDMKEAAKLLHELGAKAVLIKGGHLEG---EAV----- 185 (263)
T ss_pred cCeEecCCHHHHHHHcC--------------C----CccCCHHHHHHHHHHHHHhCCCEEEEcCCCCCC---Cce-----
Confidence 67799999998887642 1 377899999999999999999988888899764 112
Q ss_pred EEEEEcCCCCcEEEcCCCCEEEEcCCCCHHHHHHHHHHh
Q 048392 102 FVIIDFINLSSVSVDPEAKTAWVQAGATNGKVYHTIAEK 140 (515)
Q Consensus 102 gvvIdl~~l~~v~~d~~~~~v~v~aG~~~~~l~~~l~~~ 140 (515)
-++.|-..+..++-..=...=+=|.||++......-..+
T Consensus 186 D~l~~~~~~~~f~~~ri~t~~tHGTGCTlSaAIaa~LA~ 224 (263)
T COG0351 186 DVLYDGGSFYTFEAPRIPTKNTHGTGCTLSAAIAANLAK 224 (263)
T ss_pred eEEEcCCceEEEeccccCCCCCCCccHHHHHHHHHHHHc
Confidence 244443211111100001112468899998665544444
No 52
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=60.46 E-value=17 Score=38.82 Aligned_cols=68 Identities=13% Similarity=0.216 Sum_probs=50.7
Q ss_pred HHHHHhhCCCCCCcccceEecCCCCCchhHHhhcccccCCCCCCCCCccEEEecCCHHHHHHHHHHHHhCC-CeEEE
Q 048392 7 FVQCLLENSEDSTSISKLIYTRTNSSFSSILDFSIQNLRFSTPTTPKPQVIVTPVKESHVQAAVKCSQKYG-LQVRV 82 (515)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~-~~~~~ 82 (515)
|.+.+-..+.+ +.+.|+..+-|+-+.+.. ++..+ ....-|-.++.|.|+++|..+|++|+++- .||.+
T Consensus 113 Lv~kara~G~~---I~gvvIsAGIP~le~A~E-lI~~L----~~~G~~yv~fKPGtIeqI~svi~IAka~P~~pIil 181 (717)
T COG4981 113 LVQKARASGAP---IDGVVISAGIPSLEEAVE-LIEEL----GDDGFPYVAFKPGTIEQIRSVIRIAKANPTFPIIL 181 (717)
T ss_pred HHHHHHhcCCC---cceEEEecCCCcHHHHHH-HHHHH----hhcCceeEEecCCcHHHHHHHHHHHhcCCCCceEE
Confidence 44555555554 589999999999998853 22222 23458889999999999999999999984 67765
No 53
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=46.53 E-value=1.2e+02 Score=31.76 Aligned_cols=35 Identities=29% Similarity=0.426 Sum_probs=33.0
Q ss_pred CCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 048392 52 PKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGG 86 (515)
Q Consensus 52 ~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~G 86 (515)
+....|+.|+-.|-..++.+.++++|+++.-|+.|
T Consensus 259 ~~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~ 293 (419)
T COG1519 259 PNLLLILVPRHPERFKAVENLLKRKGLSVTRRSQG 293 (419)
T ss_pred CCceEEEecCChhhHHHHHHHHHHcCCeEEeecCC
Confidence 36789999999999999999999999999999999
No 54
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=46.44 E-value=29 Score=34.90 Aligned_cols=59 Identities=19% Similarity=0.349 Sum_probs=42.4
Q ss_pred cceEecCCCCCchhHHhhcccccCCCCCCCCCccEEEecCC------HHHHHHHHHHHHhCC------CeEEEEcCCC
Q 048392 22 SKLIYTRTNSSFSSILDFSIQNLRFSTPTTPKPQVIVTPVK------ESHVQAAVKCSQKYG------LQVRVRSGGH 87 (515)
Q Consensus 22 ~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~~------~~dv~~~v~~a~~~~------~~~~~~g~Gh 87 (515)
.+.|..|+.+.|.+.+... +.||. ....+++|.. +++|.++++.+.+.+ +=|.+||||+
T Consensus 17 I~vITs~~gAa~~D~~~~~--~~r~~-----~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 17 IAVITSPTGAAIQDFLRTL--KRRNP-----IVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred EEEEeCCchHHHHHHHHHH--HHhCC-----CcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 4566677888998887643 44765 4556677765 579999999998754 5567788884
No 55
>PF03614 Flag1_repress: Repressor of phase-1 flagellin; InterPro: IPR003223 Flagellin is the subunit which polymerises to form the filaments of bacterial flagella. The proteins in this family are transcriptional repressors of phase-1 flagellin genes.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent
Probab=45.94 E-value=40 Score=29.62 Aligned_cols=39 Identities=21% Similarity=0.104 Sum_probs=32.0
Q ss_pred EEecCCHHHHHHHHHHHHhCCCeEEEEc-CCCCCCCCCcc
Q 048392 57 IVTPVKESHVQAAVKCSQKYGLQVRVRS-GGHDYEGLSYV 95 (515)
Q Consensus 57 vv~p~~~~dv~~~v~~a~~~~~~~~~~g-~Gh~~~~~~~~ 95 (515)
=+.|++.+-+...+.+++.+.+|+++.. .|+.+.+.-.+
T Consensus 9 Evwprdys~ler~l~f~r~~~~pVrvv~~ng~~f~myV~g 48 (165)
T PF03614_consen 9 EVWPRDYSMLERRLQFWRFNDIPVRVVSENGQVFCMYVSG 48 (165)
T ss_pred ccCcchHHHHHHHHHHHHhcCCceEEEecCCcEEEEEEec
Confidence 3789999999999999999999998876 48887654433
No 56
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=45.10 E-value=1.8e+02 Score=32.03 Aligned_cols=27 Identities=11% Similarity=0.287 Sum_probs=22.3
Q ss_pred hhHhhhhcccHHHHHHhhhccCCCCCcccC
Q 048392 472 IWGLKYFKNNFKRLVDVKTMVDPGNFFRNE 501 (515)
Q Consensus 472 ~~~~~yyG~n~~RL~~IK~kyDP~nvF~~~ 501 (515)
.+.+.| + +.+.+++++++||+++|.++
T Consensus 538 ~L~~~Y-P--~d~F~~~R~~lDP~g~f~N~ 564 (573)
T PLN02465 538 RLRKRF-P--VDAFNKARKELDPKGILSNN 564 (573)
T ss_pred HHHhhC-C--HHHHHHHHHHhCCCCccCCH
Confidence 455544 5 99999999999999999764
No 57
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=45.10 E-value=11 Score=39.15 Aligned_cols=20 Identities=25% Similarity=0.675 Sum_probs=18.9
Q ss_pred ccHHHHHHhhhccCCCCCcc
Q 048392 480 NNFKRLVDVKTMVDPGNFFR 499 (515)
Q Consensus 480 ~n~~RL~~IK~kyDP~nvF~ 499 (515)
.|+.+..++|+++||.++|.
T Consensus 485 ~n~~~flkvr~~lDP~~lFs 504 (518)
T KOG4730|consen 485 KNLDKFLKVRKELDPKGLFS 504 (518)
T ss_pred cChHHHHHHHHhcCccchhh
Confidence 69999999999999999995
No 58
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=40.45 E-value=17 Score=37.35 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=17.7
Q ss_pred cc-HHHHHHhhhccCCCCCccc
Q 048392 480 NN-FKRLVDVKTMVDPGNFFRN 500 (515)
Q Consensus 480 ~n-~~RL~~IK~kyDP~nvF~~ 500 (515)
.+ .+-.++||++|||.++|+-
T Consensus 324 ~~~~~l~~~lK~~fDP~~ilnp 345 (352)
T PRK11282 324 APLLRIHRRLKQAFDPAGIFNP 345 (352)
T ss_pred HHHHHHHHHHHHhcCcccCCCC
Confidence 44 6778999999999999974
No 59
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=39.88 E-value=36 Score=36.05 Aligned_cols=77 Identities=21% Similarity=0.281 Sum_probs=50.6
Q ss_pred hhHHHHHHhhCC-CCCC---------cccceEecCCCCCchhHHhhcccccCCCCCCCCCccEEEecCCH------HHHH
Q 048392 4 AHKFVQCLLENS-EDST---------SISKLIYTRTNSSFSSILDFSIQNLRFSTPTTPKPQVIVTPVKE------SHVQ 67 (515)
Q Consensus 4 ~~~~~~~~~~~~-~~~~---------~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~~~------~dv~ 67 (515)
++.|++.|..++ .+.+ .-.+.|..|+.+.+.+.+... +.||+ .-...++|..+ .+|.
T Consensus 110 ~~~lk~~L~~eGlfd~~~k~~lP~~p~~I~viTs~~gAa~~D~~~~~--~~r~p-----~~~~~~~~~~vQG~~A~~~i~ 182 (438)
T PRK00286 110 FEQLKEKLAAEGLFDPERKKPLPFFPKRIGVITSPTGAAIRDILTVL--RRRFP-----LVEVIIYPTLVQGEGAAASIV 182 (438)
T ss_pred HHHHHHHHHHCCCCChhhcCCCCCCCCEEEEEeCCccHHHHHHHHHH--HhcCC-----CCeEEEecCcCcCccHHHHHH
Confidence 455666666654 2211 013456667888888886643 56775 34567777766 8999
Q ss_pred HHHHHHHhC--CCeEEEEcCCC
Q 048392 68 AAVKCSQKY--GLQVRVRSGGH 87 (515)
Q Consensus 68 ~~v~~a~~~--~~~~~~~g~Gh 87 (515)
++++.+.+. .+=|.+||||+
T Consensus 183 ~al~~~~~~~~Dviii~RGGGS 204 (438)
T PRK00286 183 AAIERANARGEDVLIVARGGGS 204 (438)
T ss_pred HHHHHhcCCCCCEEEEecCCCC
Confidence 999998874 55678888883
No 60
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=35.76 E-value=40 Score=31.01 Aligned_cols=26 Identities=19% Similarity=0.060 Sum_probs=22.3
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCCCCC
Q 048392 66 VQAAVKCSQKYGLQVRVRSGGHDYEG 91 (515)
Q Consensus 66 v~~~v~~a~~~~~~~~~~g~Gh~~~~ 91 (515)
..+.++|++++++|+.|.++|.++..
T Consensus 78 fKef~e~ike~di~fiVvSsGm~~fI 103 (220)
T COG4359 78 FKEFVEWIKEHDIPFIVVSSGMDPFI 103 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchHH
Confidence 45678999999999999999998643
No 61
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.41 E-value=49 Score=30.24 Aligned_cols=36 Identities=19% Similarity=0.351 Sum_probs=30.7
Q ss_pred CCCCCCCCCccEEEecCCHHHHHHHHHHHHhCCCeEEE
Q 048392 45 RFSTPTTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRV 82 (515)
Q Consensus 45 r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~ 82 (515)
||-. ...|..||...+++++.++.+.|++.+++..+
T Consensus 118 ~We~--~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~ 153 (190)
T KOG3282|consen 118 RWEN--CGQAKIVVKAESEEELMELQKDAKKLGLYTHL 153 (190)
T ss_pred HHHH--cCCceEEEEcCCHHHHHHHHHHHHHcCCcEEE
Confidence 4754 46999999999999999999999999877543
No 62
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=28.25 E-value=43 Score=35.38 Aligned_cols=77 Identities=16% Similarity=0.240 Sum_probs=47.5
Q ss_pred hhHHHHHHhhCC-CCCC---------cccceEecCCCCCchhHHhhcccccCCCCCCCCCccEEEecCC------HHHHH
Q 048392 4 AHKFVQCLLENS-EDST---------SISKLIYTRTNSSFSSILDFSIQNLRFSTPTTPKPQVIVTPVK------ESHVQ 67 (515)
Q Consensus 4 ~~~~~~~~~~~~-~~~~---------~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~~------~~dv~ 67 (515)
++.|++.|..++ .+.+ .-.+.|..|+.+.+.+.+... +.||+. -..+++|.. +.+|.
T Consensus 104 ~~~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~aa~~D~~~~~--~~r~p~-----~~~~~~~~~vQG~~a~~~i~ 176 (432)
T TIGR00237 104 YEQLKEKLAAEGLFDQEYKKPLPHFPKRVGVITSQTGAALADILHIL--KRRDPS-----LKVVIYPTLVQGEGAVQSIV 176 (432)
T ss_pred HHHHHHHHHHCCCCCchhcCCCCCCCCEEEEEeCCccHHHHHHHHHH--HhhCCC-----ceEEEecccccCccHHHHHH
Confidence 455666666654 2111 013556667888898887633 567753 344455544 47999
Q ss_pred HHHHHHHhC---CCeEEEEcCCC
Q 048392 68 AAVKCSQKY---GLQVRVRSGGH 87 (515)
Q Consensus 68 ~~v~~a~~~---~~~~~~~g~Gh 87 (515)
++++.+.+. .+=|.+||||+
T Consensus 177 ~al~~~~~~~~~dviii~RGGGs 199 (432)
T TIGR00237 177 ESIELANTKNECDVLIVGRGGGS 199 (432)
T ss_pred HHHHHhhcCCCCCEEEEecCCCC
Confidence 999988863 34567777774
No 63
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=27.60 E-value=89 Score=27.74 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=25.7
Q ss_pred cEEEecCCHHHHHHHHHHHHhCCCeEEEE
Q 048392 55 QVIVTPVKESHVQAAVKCSQKYGLQVRVR 83 (515)
Q Consensus 55 ~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ 83 (515)
..|+.|.+.+|+..+++.|-+..-|+.+|
T Consensus 125 ~~v~~Ps~~~~~~~ll~~a~~~~~P~~ir 153 (156)
T cd07033 125 MTVLRPADANETAAALEAALEYDGPVYIR 153 (156)
T ss_pred CEEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 46799999999999999999887788877
No 64
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=27.00 E-value=87 Score=25.77 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=38.8
Q ss_pred ceEecCCCCCchhHHhhcccccCCCCCCCCCcc-EEEecCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 048392 23 KLIYTRTNSSFSSILDFSIQNLRFSTPTTPKPQ-VIVTPVKESHVQAAVKCSQKYGLQVRVRSGG 86 (515)
Q Consensus 23 ~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~-~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~G 86 (515)
-+.+=||-.+=+.++- .| .|. .+|.+.+-.|+..++..|.+.|+|+.+.+.-
T Consensus 37 iN~IKPGIgEaTRvLL-----RR-------vP~~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~d~ 89 (100)
T PF15608_consen 37 INLIKPGIGEATRVLL-----RR-------VPWKVLVRDPDDPDLAHLLLLAEEKGVPVEVYPDL 89 (100)
T ss_pred cccccCChhHHHHHHH-----hc-------CCCEEEECCCCCccHHHHHHHHHHcCCcEEEeCCC
Confidence 3456677776666642 12 444 4577788899999999999999999998755
No 65
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=24.86 E-value=42 Score=36.43 Aligned_cols=26 Identities=15% Similarity=0.322 Sum_probs=21.3
Q ss_pred hHhhhhcccHHHHHHhhhccCCCCCcccC
Q 048392 473 WGLKYFKNNFKRLVDVKTMVDPGNFFRNE 501 (515)
Q Consensus 473 ~~~~yyG~n~~RL~~IK~kyDP~nvF~~~ 501 (515)
|.+.| + +.+.++|++++||+++|.++
T Consensus 509 l~~~Y-P--~d~F~~~R~~lDP~g~F~N~ 534 (541)
T TIGR01676 509 LKKKF-P--VDASNKARKALDPNKILSNN 534 (541)
T ss_pred HHhhC-C--HHHHHHHHHHhCCCCccccH
Confidence 54444 4 89999999999999999764
No 66
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=24.60 E-value=1.6e+02 Score=24.73 Aligned_cols=38 Identities=16% Similarity=0.285 Sum_probs=31.9
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHhCCCeE-EEEcCCCC
Q 048392 51 TPKPQVIVTPVKESHVQAAVKCSQKYGLQV-RVRSGGHD 88 (515)
Q Consensus 51 ~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~-~~~g~Gh~ 88 (515)
...+..|+.+.+++++.++.+-|++.|++. .++=.|+.
T Consensus 45 ~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v~DAG~T 83 (113)
T PRK04322 45 EGQKKVVLKVNSEEELLELKEKAERLGLPTALIRDAGLT 83 (113)
T ss_pred CCCcEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 358999999999999999999999999874 55566654
No 67
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=23.77 E-value=53 Score=34.48 Aligned_cols=76 Identities=22% Similarity=0.324 Sum_probs=49.4
Q ss_pred hhHHHHHHhhCC-CCCC---------cccceEecCCCCCchhHHhhcccccCCCCCCCCCccEEEecCCH------HHHH
Q 048392 4 AHKFVQCLLENS-EDST---------SISKLIYTRTNSSFSSILDFSIQNLRFSTPTTPKPQVIVTPVKE------SHVQ 67 (515)
Q Consensus 4 ~~~~~~~~~~~~-~~~~---------~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~~~------~dv~ 67 (515)
++.|++.|..++ .+.. ...+.|..|+.+...+.++.. ..||+ .-..+|+|..+ ++|.
T Consensus 110 ~E~lK~kL~aEGlFd~~~KkpLP~~p~~IGVITS~tgAairDIl~~~--~rR~P-----~~~viv~pt~VQG~~A~~eIv 182 (440)
T COG1570 110 FEQLKAKLAAEGLFDPERKKPLPFFPKKIGVITSPTGAALRDILHTL--SRRFP-----SVEVIVYPTLVQGEGAAEEIV 182 (440)
T ss_pred HHHHHHHHHhCCCcChhhcCCCCCCCCeEEEEcCCchHHHHHHHHHH--HhhCC-----CCeEEEEeccccCCCcHHHHH
Confidence 466777776655 2111 123556667777888776533 56786 35566777654 7999
Q ss_pred HHHHHHHhCC-Ce--EEEEcCC
Q 048392 68 AAVKCSQKYG-LQ--VRVRSGG 86 (515)
Q Consensus 68 ~~v~~a~~~~-~~--~~~~g~G 86 (515)
++|+.|++.+ +- |..||||
T Consensus 183 ~aI~~an~~~~~DvlIVaRGGG 204 (440)
T COG1570 183 EAIERANQRGDVDVLIVARGGG 204 (440)
T ss_pred HHHHHhhccCCCCEEEEecCcc
Confidence 9999999987 44 4556666
No 68
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=23.57 E-value=1.2e+02 Score=27.46 Aligned_cols=32 Identities=13% Similarity=0.213 Sum_probs=26.6
Q ss_pred cEEEecCCHHHHHHHHHHHHh--CCCeEEEEcCC
Q 048392 55 QVIVTPVKESHVQAAVKCSQK--YGLQVRVRSGG 86 (515)
Q Consensus 55 ~~vv~p~~~~dv~~~v~~a~~--~~~~~~~~g~G 86 (515)
..|+.|.+.+|+..++++|-+ ..-|+.+|-.-
T Consensus 139 ~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~r 172 (178)
T PF02779_consen 139 MKVVVPSDPAEAKGLLRAAIRRESDGPVYIREPR 172 (178)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEES
T ss_pred cccccCCCHHHHHHHHHHHHHhCCCCeEEEEeeH
Confidence 678999999999999999999 56788887643
No 69
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=23.34 E-value=1.8e+02 Score=26.47 Aligned_cols=65 Identities=14% Similarity=0.048 Sum_probs=31.6
Q ss_pred CccEEEecCCHH-HHHHHHHHHHhCCCeEEEEc-CCCCCCCCCcccCCCCCEEEEEcCCCCcEEEcCCCCEE
Q 048392 53 KPQVIVTPVKES-HVQAAVKCSQKYGLQVRVRS-GGHDYEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTA 122 (515)
Q Consensus 53 ~p~~vv~p~~~~-dv~~~v~~a~~~~~~~~~~g-~Gh~~~~~~~~~~~~~~gvvIdl~~l~~v~~d~~~~~v 122 (515)
.-..++.|.+.+ |++++++-+.+.++|++..+ -...- .+...- --+-||++--+.+--+++...+
T Consensus 83 DRVllfs~~~~~~e~~~~a~~L~~~gi~~v~Vs~~~~~~--~~l~~~---~~~~Idl~~~~~LvP~EdG~Ri 149 (172)
T PF10740_consen 83 DRVLLFSPFSTDEEAVALAKQLIEQGIPFVGVSPNKPDE--EDLEDL---ADVHIDLKLPKPLVPTEDGDRI 149 (172)
T ss_dssp -EEEEEES-S--HHHHHHHHHHHHHT--EEEEE-SS-----TTGGG----SSS-EE----S-SEE-TTS-EE
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEEecCCCC--Cchhhh---hhheeecccCCCcccCCCCCEe
Confidence 334566676666 99999999999999999999 22111 122211 1366888777776665555444
No 70
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=23.20 E-value=1.6e+02 Score=24.96 Aligned_cols=32 Identities=6% Similarity=0.091 Sum_probs=29.0
Q ss_pred CCccEEEecCCHHHHHHHHHHHHhCCCeEEEE
Q 048392 52 PKPQVIVTPVKESHVQAAVKCSQKYGLQVRVR 83 (515)
Q Consensus 52 ~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ 83 (515)
.....|+...+++|+.++-+-|++.|++..++
T Consensus 54 g~~KVVLkv~~e~eL~~L~~~a~~~gi~~~l~ 85 (116)
T cd02429 54 NMHKVVLEVPDEAALKNLSSKLTENSIKHKLW 85 (116)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCCeEEE
Confidence 38999999999999999999999999987764
No 71
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=22.69 E-value=47 Score=20.52 Aligned_cols=12 Identities=25% Similarity=0.551 Sum_probs=9.5
Q ss_pred ccHHHHHHhhhc
Q 048392 480 NNFKRLVDVKTM 491 (515)
Q Consensus 480 ~n~~RL~~IK~k 491 (515)
+-|+||++||.-
T Consensus 11 eFY~rlk~Ike~ 22 (28)
T PF12108_consen 11 EFYERLKEIKEY 22 (28)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 358999999963
No 72
>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.
Probab=22.49 E-value=1.7e+02 Score=24.55 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=32.5
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHhCCCeE-EEEcCCCCC
Q 048392 51 TPKPQVIVTPVKESHVQAAVKCSQKYGLQV-RVRSGGHDY 89 (515)
Q Consensus 51 ~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~-~~~g~Gh~~ 89 (515)
...+..|+...+++++.++.+.|++.|+|. .++-.|++-
T Consensus 48 ~g~~Kivlkv~~e~~L~~l~~~a~~~gl~~~~i~Dag~Te 87 (116)
T PF01981_consen 48 NGQKKIVLKVPSEEELLELAKKAKEAGLPHYLIRDAGRTE 87 (116)
T ss_dssp TTTSEEEEEESSHHHHHHHHHHHHHTT-SEEEEEETSSSS
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHCCCCEEEEEECCCCc
Confidence 358899999999999999999999999986 456678763
No 73
>PRK06186 hypothetical protein; Validated
Probab=21.89 E-value=72 Score=30.55 Aligned_cols=27 Identities=15% Similarity=0.326 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEcCCC
Q 048392 61 VKESHVQAAVKCSQKYGLQVRVRSGGH 87 (515)
Q Consensus 61 ~~~~dv~~~v~~a~~~~~~~~~~g~Gh 87 (515)
+..+--..++++|+++++|+.=.+.|=
T Consensus 66 rg~~Gki~ai~~Are~~iP~LGIClGm 92 (229)
T PRK06186 66 RNDDGALTAIRFARENGIPFLGTCGGF 92 (229)
T ss_pred ccHhHHHHHHHHHHHcCCCeEeechhh
Confidence 567889999999999999998777763
No 74
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=21.78 E-value=1.6e+02 Score=24.68 Aligned_cols=31 Identities=6% Similarity=0.117 Sum_probs=26.4
Q ss_pred EecCCHHHHHHHHHHHHhCCCeEEEEcCCCC
Q 048392 58 VTPVKESHVQAAVKCSQKYGLQVRVRSGGHD 88 (515)
Q Consensus 58 v~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~ 88 (515)
=.+....++.++++.|+++|+|+....+.++
T Consensus 55 S~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 55 SNSGETDELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred eCCCCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3455779999999999999999999888665
No 75
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=21.58 E-value=1.6e+02 Score=27.56 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=31.0
Q ss_pred CCCcEEEcCCCCEEEEcCCCCHHHHHHHHHHhCCc
Q 048392 109 NLSSVSVDPEAKTAWVQAGATNGKVYHTIAEKSKT 143 (515)
Q Consensus 109 ~l~~v~~d~~~~~v~v~aG~~~~~l~~~l~~~g~~ 143 (515)
..++|++|.+.+.+.|+.-+.+.++...|...|+.
T Consensus 33 Gi~~vevdle~q~v~v~ts~p~s~i~~~le~tGr~ 67 (247)
T KOG4656|consen 33 GINSVEVDLEQQIVSVETSVPPSEIQNTLENTGRD 67 (247)
T ss_pred CcceEEEEhhhcEEEEEccCChHHHHHHHHhhChh
Confidence 35678899999999999999999999999998764
No 76
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=21.17 E-value=6.9e+02 Score=27.52 Aligned_cols=133 Identities=17% Similarity=0.257 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCcccCCCCCEEEEEcCC--CCc---EEEcCCC---CEEEEcCCCC----H
Q 048392 63 ESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFIN--LSS---VSVDPEA---KTAWVQAGAT----N 130 (515)
Q Consensus 63 ~~dv~~~v~~a~~~~~~~~~~g~Gh~~~~~~~~~~~~~~gvvIdl~~--l~~---v~~d~~~---~~v~v~aG~~----~ 130 (515)
.++|.+.+..+.+++-++....+-.+.+..-.+.+ |+||-|- |=+ --.++++ .+.-|=|--+ .
T Consensus 312 ~~eI~a~i~~~~~~~P~laMVnSdkGITNLHvPsD-----VIIDASMPAmIR~~GkmW~~dG~~~Dt~avIPD~sYA~vY 386 (741)
T TIGR00178 312 QEEIEADLQAVYAQRPELAMVNSDKGITNLHVPSD-----VIVDASMPAMIRASGKMWGPDGKLKDTKAVIPDRCYAGVY 386 (741)
T ss_pred HHHHHHHHHHHHhhCCCEEEeccCCCccccCCCcC-----eEEecCcHHHHhccCCccCCCCCcccceeecCCccchHHH
Confidence 46799999999999999999988777776667766 8898642 211 0123332 2333433333 3
Q ss_pred HHHHHHHHHhCCccee-cCCCCCcccchhhhhCCC--CCCcccccccccceEeEEEEEecCCcEEe-cCCCCcchhhhhh
Q 048392 131 GKVYHTIAEKSKTLAF-PAGVCPTVGVGGLFSGGG--YGFLMRKYGLAADNVVDAHLIDVNGRLLD-RKSMGEDLFWAIR 206 (515)
Q Consensus 131 ~~l~~~l~~~g~~l~~-~~g~~~~vgigG~~~ggg--~g~~~~~~G~~~d~v~~~~vv~~~G~~~~-~~~~~~dL~~a~r 206 (515)
.++.+.+.++|. +-. ..|+.+.||+ ++--+ +|..-..|-...|- .++||+.+|+++. -..+.-|+|+++.
T Consensus 387 q~~I~~ck~nGa-fDp~TmGsV~NVGL---MAqKAEEYGSHdkTFei~~~G--~v~Vvd~~G~vl~eh~Ve~GDIwRmcq 460 (741)
T TIGR00178 387 QVVIEDCKQNGA-FDPTTMGTVPNVGL---MAQKAEEYGSHDKTFQIPADG--VVRVVDSSGEVLLEQSVEAGDIWRMCQ 460 (741)
T ss_pred HHHHHHHHhcCC-CCcccccCCcchhH---hHHHHHHhcCCCcceecCCCc--eEEEEeCCCCEEEEeeccCCcchhhhh
Confidence 466677888862 221 1266666655 32211 22111122222232 3678899999884 3345569988875
No 77
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=21.06 E-value=97 Score=30.18 Aligned_cols=62 Identities=11% Similarity=0.085 Sum_probs=45.2
Q ss_pred CCcccceEecCCCCCchhHHhhcccccCCCCCCCCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q 048392 18 STSISKLIYTRTNSSFSSILDFSIQNLRFSTPTTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDY 89 (515)
Q Consensus 18 ~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~ 89 (515)
++-|.|+++.-+..-..+.+..+... --...+.+.+++++.++|+.|.++ .-+.+.+||-+-
T Consensus 11 ~ElL~G~ivdtNa~~la~~L~~~G~~---------v~~~~~VgD~~~~I~~~l~~a~~r-~D~vI~tGGLGP 72 (255)
T COG1058 11 DELLSGRIVDTNAAFLADELTELGVD---------LARITTVGDNPDRIVEALREASER-ADVVITTGGLGP 72 (255)
T ss_pred cceecCceecchHHHHHHHHHhcCce---------EEEEEecCCCHHHHHHHHHHHHhC-CCEEEECCCcCC
Confidence 34467777766666665554433322 445678999999999999999998 889999988543
No 78
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=21.01 E-value=93 Score=31.55 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEc--CCCC
Q 048392 61 VKESHVQAAVKCSQKYGLQVRVRS--GGHD 88 (515)
Q Consensus 61 ~~~~dv~~~v~~a~~~~~~~~~~g--~Gh~ 88 (515)
-|.+|++++|++|+++||.|.+-= =||+
T Consensus 72 YT~~di~elv~yA~~rgI~vIPEiD~PGH~ 101 (329)
T cd06568 72 YTQEDYKDIVAYAAERHITVVPEIDMPGHT 101 (329)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEecCCcHHH
Confidence 489999999999999999887642 3665
No 79
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=20.89 E-value=6.9e+02 Score=27.61 Aligned_cols=78 Identities=14% Similarity=0.137 Sum_probs=46.5
Q ss_pred Ccc-EEEecCCHHHHHHHHHHHHhCC-CeEEEEcC-CCCCCCCCcccCCCCCEEEEEcCCCCcEEEcCCCCEEEEcCCCC
Q 048392 53 KPQ-VIVTPVKESHVQAAVKCSQKYG-LQVRVRSG-GHDYEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTAWVQAGAT 129 (515)
Q Consensus 53 ~p~-~vv~p~~~~dv~~~v~~a~~~~-~~~~~~g~-Gh~~~~~~~~~~~~~~gvvIdl~~l~~v~~d~~~~~v~v~aG~~ 129 (515)
.|- .|..|++++|+++++.+|..++ -|+.+|== |+......... .-.++.++ ..-+-+..+.+.+.=|..
T Consensus 440 iPnmvi~aP~de~el~~ml~ta~~~~~gP~AiRyPrg~~~~~~~~~~-----~~~~~~Gk--~~i~~~G~~vail~~G~~ 512 (627)
T COG1154 440 IPNMVIMAPRDEEELRQMLYTALAQDDGPVAIRYPRGNGVGVILTPE-----LEPLEIGK--GELLKEGEKVAILAFGTM 512 (627)
T ss_pred CCCcEEecCCCHHHHHHHHHHHHhcCCCCeEEEecCCCCCCCCcccc-----cccccccc--eEEEecCCcEEEEecchh
Confidence 443 5678999999999999999998 59977742 33221111100 11233333 112234567888888888
Q ss_pred HHHHHHHH
Q 048392 130 NGKVYHTI 137 (515)
Q Consensus 130 ~~~l~~~l 137 (515)
+..-....
T Consensus 513 ~~~al~va 520 (627)
T COG1154 513 LPEALKVA 520 (627)
T ss_pred hHHHHHHH
Confidence 87544433
No 80
>TIGR00283 arch_pth2 peptidyl-tRNA hydrolase. This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447.
Probab=20.69 E-value=2.1e+02 Score=24.14 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=31.6
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHhCCCeE-EEEcCCCC
Q 048392 51 TPKPQVIVTPVKESHVQAAVKCSQKYGLQV-RVRSGGHD 88 (515)
Q Consensus 51 ~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~-~~~g~Gh~ 88 (515)
...+..++...+++++.++.+-|++.|++. .++=.|+.
T Consensus 47 ~G~~KVvlk~~~~~el~~l~~~a~~~~l~~~~v~DAG~T 85 (115)
T TIGR00283 47 EGQKKVVLKVNSLEELLEIYHKAESLGLVTGLIRDAGHT 85 (115)
T ss_pred cCCCEEEEEeCCHHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 458889999999999999999999999886 44555654
No 81
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=20.40 E-value=88 Score=33.16 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEE--cCCCC
Q 048392 61 VKESHVQAAVKCSQKYGLQVRVR--SGGHD 88 (515)
Q Consensus 61 ~~~~dv~~~v~~a~~~~~~~~~~--g~Gh~ 88 (515)
-|.+||+++|++|+.+|++|.+- .=||.
T Consensus 247 YT~eDv~evV~yarlRGIRVlpEfD~PgHt 276 (542)
T KOG2499|consen 247 YTREDVSEVVEYARLRGIRVLPEFDTPGHT 276 (542)
T ss_pred ecHHHHHHHHHHHHhccceeeecccCCccc
Confidence 46789999999999999998764 44665
No 82
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=20.06 E-value=1e+02 Score=30.81 Aligned_cols=29 Identities=14% Similarity=0.235 Sum_probs=23.3
Q ss_pred cCCHHHHHHHHHHHHhCCCeEEEE--cCCCC
Q 048392 60 PVKESHVQAAVKCSQKYGLQVRVR--SGGHD 88 (515)
Q Consensus 60 p~~~~dv~~~v~~a~~~~~~~~~~--g~Gh~ 88 (515)
.-|.+|++++|++|+++|+.|.+- .=||.
T Consensus 68 ~yT~~di~elv~yA~~rgI~viPEiD~PGH~ 98 (303)
T cd02742 68 FYTYAQLKDIIEYAAARGIEVIPEIDMPGHS 98 (303)
T ss_pred eECHHHHHHHHHHHHHcCCEEEEeccchHHH
Confidence 458899999999999999988664 33665
Done!