BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048393
(369 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 181 bits (459), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 122/375 (32%), Positives = 192/375 (51%), Gaps = 37/375 (9%)
Query: 22 LQTFTELVERMND------VDCIVYDSFLPWALDVAKKFGLTGAAFLTQS-CAVASIYHH 74
L+ + EL+ R+N V C+V D + + + A++F L + + S C++ ++ H
Sbjct: 100 LKPYCELLTRLNHSTNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHF 159
Query: 75 ---VNKGLIKLP----LTGDEVXXXX-----XXXXXXQDTPSFI---NDPASYPAFFDMI 119
V +G+I LT + +D FI N FF +
Sbjct: 160 RSFVERGIIPFKDESYLTNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEV 219
Query: 120 VTRQFYNIDKADWILCNTFYELEKEVTEWLGKQHWLLRTIGPTLPSIYLD-KQIEDDKEY 178
R ++K IL NTF ELE +V L + IGP LPS+ QI
Sbjct: 220 ADR----VNKDTTILLNTFNELESDVINALSSTIPSIYPIGP-LPSLLKQTPQIHQLDSL 274
Query: 179 GFSIFETNIESCMKWLNDRANGSVVYVSFGSMATLKMEQMEELAWGLKASDKYFLWVVRE 238
++++ + E C+ WL + GSVVYV+FGS + EQ+ E AWGL K FLW++R
Sbjct: 275 DSNLWKEDTE-CLDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRP 333
Query: 239 S----EQSKLPENFSDETSQKGLVVNWCPQLGVLAHEATGCFLTHCGWNSTMEALGLGVP 294
F++E + +GL+ +WCPQ VL H + G FLTHCGWNST E++ GVP
Sbjct: 334 DLVIGGSVIFSSEFTNEIADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVP 393
Query: 295 MLAMPQWSDQSTNAKYIMDVGKMGLKVPADEKGIVRREAIAHCINEILEGERGKEIKQNA 354
ML P ++DQ T+ ++I + ++G+++ + V+RE +A INE++ G++GK++KQ A
Sbjct: 394 MLCWPFFADQPTDCRFICNEWEIGMEIDTN----VKREELAKLINEVIAGDKGKKMKQKA 449
Query: 355 DKWRNFAKEAVAKGG 369
+ + A+E GG
Sbjct: 450 MELKKKAEENTRPGG 464
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 115/374 (30%), Positives = 174/374 (46%), Gaps = 45/374 (12%)
Query: 23 QTFTELVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAFLTQSCAVASIYHHVNKGLIKL 82
+ F VE +V D F A DVA +F + F + V S + H L
Sbjct: 99 KVFDSFVEGGRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLH-------L 151
Query: 83 PLTGDEVXXXXXXXXXXQDTPSFINDPASYPAFFDMIVTRQ-------FYNIDK---ADW 132
P + V P + P + F D R+ +N + A+
Sbjct: 152 PKLDETVSCEFRELTEPLMLPGCV--PVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEG 209
Query: 133 ILCNTFYELEKEVTEWLGKQHWLLRTIGPTLPSIYLDKQIEDDKEYGFSIFETNIESCMK 192
IL NTF+ELE + L + + P P + + KQ +T C+K
Sbjct: 210 ILVNTFFELEPNAIKALQEPGLDKPPVYPVGPLVNIGKQ---------EAKQTEESECLK 260
Query: 193 WLNDRANGSVVYVSFGSMATLKMEQMEELAWGLKASDKYFLWVVRESEQ----------- 241
WL+++ GSV+YVSFGS TL EQ+ ELA GL S++ FLWV+R
Sbjct: 261 WLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHS 320
Query: 242 -----SKLPENFSDETSQKGLVVN-WCPQLGVLAHEATGCFLTHCGWNSTMEALGLGVPM 295
+ LP F + T ++G V+ W PQ VLAH +TG FLTHCGWNST+E++ G+P+
Sbjct: 321 QTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPL 380
Query: 296 LAMPQWSDQSTNAKYIMDVGKMGLKVPADEKGIVRREAIAHCINEILEGERGKEIKQNAD 355
+A P +++Q NA + + + L+ A + G+VRRE +A + ++EGE GK ++
Sbjct: 381 IAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMK 440
Query: 356 KWRNFAKEAVAKGG 369
+ + A + G
Sbjct: 441 ELKEAACRVLKDDG 454
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 111/386 (28%), Positives = 185/386 (47%), Gaps = 43/386 (11%)
Query: 3 GSAQAESNQAYVDRFWKIGLQTFTE-----LVERMNDVDCIVYDSFLPWALDVAKKFGLT 57
G A Q ++ F + ++F + + E V C+V D+F+ +A D+A + G+
Sbjct: 76 GYVFAGRPQEDIELFTRAAPESFRQGMVMAVAETGRPVSCLVADAFIWFAADMAAEMGVA 135
Query: 58 GAAFLTQSCAVASIYHHVNKGLIKLPLTG-----DEVX-----XXXXXXXXXQDTPSFIN 107
F T S + ++++ K+ ++G DE+ Q+ F N
Sbjct: 136 WLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDELLNFIPGMSKVRFRDLQEGIVFGN 195
Query: 108 DPASYPAFFDMIVTRQFYNIDKADWILCNTFYELEKEVTEWLGKQHWLLRTIGP----TL 163
+ F ++ R + KA + N+F EL+ +T L + IGP T
Sbjct: 196 ----LNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKLKTYLNIGPFNLITP 251
Query: 164 PSIYLDKQIEDDKEYGFSIFETNIESCMKWLNDRANGSVVYVSFGSMATLKMEQMEELAW 223
P + N C++WL +R SVVY+SFG++ T ++ L+
Sbjct: 252 PPVV-----------------PNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSE 294
Query: 224 GLKASDKYFLWVVRESEQSKLPENFSDETSQKGLVVNWCPQLGVLAHEATGCFLTHCGWN 283
L+AS F+W +R+ + LPE F ++T G+VV W PQ VLAHEA G F+THCGWN
Sbjct: 295 ALEASRVPFIWSLRDKARVHLPEGFLEKTRGYGMVVPWAPQAEVLAHEAVGAFVTHCGWN 354
Query: 284 STMEALGLGVPMLAMPQWSDQSTNAKYIMDVGKMGLKVPADEKGIVRREAIAHCINEILE 343
S E++ GVP++ P + DQ N + + DV ++G+++ E G+ + + C ++IL
Sbjct: 355 SLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRI---EGGVFTKSGLMSCFDQILS 411
Query: 344 GERGKEIKQNADKWRNFAKEAVAKGG 369
E+GK++++N R A AV G
Sbjct: 412 QEKGKKLRENLRALRETADRAVGPKG 437
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 137 bits (346), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 96/352 (27%), Positives = 161/352 (45%), Gaps = 33/352 (9%)
Query: 28 LVERMNDVDCIVYDSFLPWALDVAKKFGLTGAAFLTQSCAVASIYHHVNKGLIKLPLTGD 87
+ E ++ C+V D+F + D+A++ T S+ HV LI+
Sbjct: 111 VAETGKNITCLVTDAFFWFGADLAEEMHAKWVPLWT--AGPHSLLTHVYTDLIREKTGSK 168
Query: 88 EVXXXXXX-------XXXXQDTPSFINDPASYPAFFDMIVTRQFYNIDKADWILCNTFYE 140
EV D P + P F ++ + + +A+ + N+F
Sbjct: 169 EVHDVKSIDVLPGFPELKASDLPEGVIKDIDVP--FATMLHKMGLELPRANAVAINSFAT 226
Query: 141 LEKEVTEWLGKQHWLLRTIGP---TLPSIYLDKQIEDDKEYGFSIFETNIESCMKWLNDR 197
+ + L + LL +GP T P +++ D E+G C++WL+
Sbjct: 227 IHPLIENELNSKFKLLLNVGPFNLTTP----QRKVSD--EHG----------CLEWLDQH 270
Query: 198 ANGSVVYVSFGSMATLKMEQMEELAWGLKASDKYFLWVVRESEQSKLPENFSDETSQKGL 257
N SVVY+SFGS+ T ++ LA L+ F+W R + KLP+ F + T KG
Sbjct: 271 ENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGDPKEKLPKGFLERTKTKGK 330
Query: 258 VVNWCPQLGVLAHEATGCFLTHCGWNSTMEALGLGVPMLAMPQWSDQSTNAKYIMDVGKM 317
+V W PQ+ +L H + G FLTH GWNS +E + GVPM++ P + DQ N V ++
Sbjct: 331 IVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEI 390
Query: 318 GLKVPADEKGIVRREAIAHCINEILEGERGKEIKQNADKWRNFAKEAVAKGG 369
G+ V + G++ +E+I + + E+G ++Q K + A +AV + G
Sbjct: 391 GVGV---DNGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNG 439
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 97/351 (27%), Positives = 167/351 (47%), Gaps = 29/351 (8%)
Query: 33 NDVDCIVYDSFLPWALDVAKKFGLTGAAFLTQSCAVASIYHHV-NKGLIKLPLTGDEVXX 91
N V +V D F +DV +FG+ FLT + S+ + N+ + ++ D
Sbjct: 113 NKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQ 172
Query: 92 XXXXXXXXQDTPSFI------NDPASYPAFFDMIVTRQFYNIDKADWILCNTFYELEKEV 145
PS + N Y A++ + +F + I+ NTF +LE+
Sbjct: 173 LLNIPGISNQVPSNVLPDACFNKDGGYIAYYKL--AERFRD---TKGIIVNTFSDLEQSS 227
Query: 146 TEWLGKQHWLLRTIGPTLPSIYLDKQIEDDK-EYGFSIFETNIESCMKWLNDRANGSVVY 204
+ L +P IY + D K + + + + +KWL+++ + SVV+
Sbjct: 228 IDALYDHD-------EKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVF 280
Query: 205 VSFGSMA-TLKMEQMEELAWGLKASDKYFLWVVRESEQSKLPENFSD--ETSQKGLVVNW 261
+ FGSM + Q+ E+A GLK S FLW +E+ PE F + E KG++ W
Sbjct: 281 LCFGSMGVSFGPSQIREIALGLKHSGVRFLWS-NSAEKKVFPEGFLEWMELEGKGMICGW 339
Query: 262 CPQLGVLAHEATGCFLTHCGWNSTMEALGLGVPMLAMPQWSDQSTNAKYIMDVGKMGLKV 321
PQ+ VLAH+A G F++HCGWNS +E++ GVP+L P +++Q NA ++ +GL +
Sbjct: 340 APQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGL 399
Query: 322 PAD-EKG--IVRREAIAHCINEILEGERGKEIKQNADKWRNFAKEAVAKGG 369
D KG +V E I + +++ ++ + + + + ++ AV GG
Sbjct: 400 RVDYRKGSDVVAAEEIEKGLKDLM--DKDSIVHKKVQEMKEMSRNAVVDGG 448
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 97/351 (27%), Positives = 167/351 (47%), Gaps = 29/351 (8%)
Query: 33 NDVDCIVYDSFLPWALDVAKKFGLTGAAFLTQSCAVASIYHHV-NKGLIKLPLTGDEVXX 91
N V +V D F +DV +FG+ FLT + S+ + N+ + ++ D
Sbjct: 113 NKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQ 172
Query: 92 XXXXXXXXQDTPSFI------NDPASYPAFFDMIVTRQFYNIDKADWILCNTFYELEKEV 145
PS + N Y A++ + +F + I+ NTF +LE+
Sbjct: 173 LLNIPGISNQVPSNVLPDACFNKDGGYIAYYKL--AERFRD---TKGIIVNTFSDLEQSS 227
Query: 146 TEWLGKQHWLLRTIGPTLPSIYLDKQIEDDK-EYGFSIFETNIESCMKWLNDRANGSVVY 204
+ L +P IY + D K + + + + +KWL+++ + SVV+
Sbjct: 228 IDALYDHD-------EKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVF 280
Query: 205 VSFGSMA-TLKMEQMEELAWGLKASDKYFLWVVRESEQSKLPENFSD--ETSQKGLVVNW 261
+ FGSM + Q+ E+A GLK S FLW +E+ PE F + E KG++ W
Sbjct: 281 LCFGSMGVSFGPSQIREIALGLKHSGVRFLWS-NSAEKKVFPEGFLEWMELEGKGMICGW 339
Query: 262 CPQLGVLAHEATGCFLTHCGWNSTMEALGLGVPMLAMPQWSDQSTNAKYIMDVGKMGLKV 321
PQ+ VLAH+A G F++HCGWNS +E++ GVP+L P +++Q NA ++ +GL +
Sbjct: 340 APQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGL 399
Query: 322 PAD-EKG--IVRREAIAHCINEILEGERGKEIKQNADKWRNFAKEAVAKGG 369
D KG +V E I + +++ ++ + + + + ++ AV GG
Sbjct: 400 RVDYRKGSDVVAAEEIEKGLKDLM--DKDSIVHKKVQEMKEMSRNAVVDGG 448
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 57/96 (59%), Gaps = 4/96 (4%)
Query: 258 VVNWCPQLGVLAHEATGCFLTHCGWNSTMEALGLGVPMLAMPQWSDQSTNAKYIMDVGKM 317
V W PQL +L + F+TH G STMEAL VPM+A+PQ ++Q+ NA+ I+++G +
Sbjct: 309 VHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELG-L 365
Query: 318 GLKVPADEKGIVR-REAIAHCINEILEGERGKEIKQ 352
G +P D+ + REA+ ++ ER ++Q
Sbjct: 366 GRHIPRDQVTAEKLREAVLAVASDPGVAERLAAVRQ 401
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 8/112 (7%)
Query: 199 NGSVVYVSFGSMATLKMEQMEELAWGLKASDKYFLWVVRESEQSKLPENFSDETSQKGLV 258
NG VV+ ++ E+ +A L + LW + N D +
Sbjct: 21 NGVVVFSLGSXVSNXTEERANVIASALAQIPQKVLW--------RFDGNKPDTLGLNTRL 72
Query: 259 VNWCPQLGVLAHEATGCFLTHCGWNSTMEALGLGVPMLAMPQWSDQSTNAKY 310
W PQ +L H T F+TH G N EA+ G+P + +P ++DQ N +
Sbjct: 73 YKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIAH 124
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 193 WLNDRANGSVVYVSFGSMATLKMEQMEELAWGLKASDKYFLWV-----VRESEQSKLPEN 247
W VV VS GS T + E + L + V +E +LP+N
Sbjct: 225 WQRPAGAEKVVLVSLGSAFTKQPAFYRECVRAFGNLPGWHLVLQIGRKVTPAELGELPDN 284
Query: 248 FSDETSQKGLVVNWCPQLGVLAHEATGCFLTHCGWNSTMEALGLGVPMLAMPQWSDQSTN 307
V +W PQL +L F+TH G + E L PM+A+PQ DQ N
Sbjct: 285 VE--------VHDWVPQLAILRQ--ADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGN 334
Query: 308 AKYIMDVG 315
A + +G
Sbjct: 335 ADMLQGLG 342
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 16/118 (13%)
Query: 193 WLNDRANG-SVVYVSFGSMATLKMEQMEELAWGLKASDKYFLWV----VRESEQSKLPEN 247
WL+ R +VY++ G+ + +E + GL D L + S ++P N
Sbjct: 234 WLSSRDTARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSLDVSGLGEVPAN 293
Query: 248 FSDETSQKGLVVNWCPQLGVLAHEATGCFLTHCGWNSTMEALGLGVPMLAMPQWSDQS 305
E+ W PQ +L H + H G +T+ ALG GVP L+ P W+ S
Sbjct: 294 VRLES--------WVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFP-WAGDS 340
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 260 NWCPQLGVLAHEATGCFLTHCGWNSTMEALGLGVPMLAMPQWSDQST-NAKYIMDVGKMG 318
W P VLAH A C LTH + +EA GVP++ +P ++ ++ +A+ ++++G
Sbjct: 287 QWIPFHSVLAH-ARAC-LTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGS 344
Query: 319 LKVPADEKGIVRREAI 334
+ P + REA+
Sbjct: 345 VLRPDQLEPASIREAV 360
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 260 NWCPQLGVLAHEATGCFLTHCGWNSTMEALGLGVPMLAMPQWSDQSTNAKYIMDVGKMGL 319
W P + VL +AT C +TH G + EAL G P++ +PQ D A+ + +G +G
Sbjct: 303 RWVPHVKVL-EQATVC-VTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQLG-LGA 359
Query: 320 KVPADE 325
+P ++
Sbjct: 360 VLPGEK 365
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 260 NWCPQLGVLAHEATGCFLTHCGWNSTMEALGLGVPMLAMPQWSDQSTNAKYIMDVGKMGL 319
W P + VL +AT C +TH G + EAL G P++ +PQ D A+ + +G +G
Sbjct: 303 RWVPHVKVL-EQATVC-VTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQLG-LGA 359
Query: 320 KVPADE 325
+P ++
Sbjct: 360 VLPGEK 365
>pdb|2P6P|A Chain A, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
pdb|2P6P|B Chain B, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
Length = 384
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 259 VNWCPQLGVLAHEATGCFLTHCGWNSTMEALGLGVPMLAMPQWSDQSTNAKYIMDVGKMG 318
V W P L V+A + H G ST+ L GVP L +P+ S A+ + D G
Sbjct: 268 VGWTP-LDVVA-PTCDLLVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAI 325
Query: 319 LKVPADEKGIVRREAIAHCINEI 341
+P ++ EAIA E+
Sbjct: 326 ALLPGEDST----EAIADSCQEL 344
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 258 VVNWCPQLGVLAHEATGCFLTHCGWNSTMEALGLGVPMLAMPQWSDQSTNAKYIMDVG 315
VV W P LG L E + H G + + AL GVP +P S Q TN + +G
Sbjct: 292 VVEWIP-LGALL-ETCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLG 347
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 258 VVNWCPQLGVLAHEATGCFLTHCGWNSTMEALGLGVPMLAMPQWSDQSTNAKYIMDVG 315
VV W P LG L E + H G + + AL GVP +P S Q TN + +G
Sbjct: 292 VVEWIP-LGALL-ETCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLG 347
>pdb|1VBM|A Chain A, Crystal Structure Of The Escherichia Coli Tyrosyl-Trna
Synthetase Complexed With Tyr-Ams
pdb|1VBM|B Chain B, Crystal Structure Of The Escherichia Coli Tyrosyl-Trna
Synthetase Complexed With Tyr-Ams
Length = 318
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 247 NFSDETSQKGLVVNWCPQLGVLAHEATGCFLTHCGWNSTMEALGLG--VPMLAMPQWSDQ 304
N + ++GLV + + A G +CG++ T ++L LG VP+L + ++ Q
Sbjct: 1 NLIKQLQERGLVAQVTDEEALAERLAQGPIALYCGFDPTADSLHLGHLVPLLCLKRFQ-Q 59
Query: 305 STNAKYIMDVGKMGL----KVPADEKGIVRREAIAHCINEI 341
+ + + G GL A E+ + E + +++I
Sbjct: 60 AGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKI 100
>pdb|1X8X|A Chain A, Tyrosyl T-Rna Synthetase From E.Coli Complexed With
Tyrosine
Length = 322
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 247 NFSDETSQKGLVVNWCPQLGVLAHEATGCFLTHCGWNSTMEALGLG--VPMLAMPQWSDQ 304
N + ++GLV + + A G +CG++ T ++L LG VP+L + ++ Q
Sbjct: 5 NLIKQLQERGLVAQVTDEEALAERLAQGPIALYCGFDPTADSLHLGHLVPLLCLKRFQ-Q 63
Query: 305 STNAKYIMDVGKMGL----KVPADEKGIVRREAIAHCINEI 341
+ + + G GL A E+ + E + +++I
Sbjct: 64 AGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKI 104
>pdb|3UYK|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
Aglycone
pdb|3UYK|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
Aglycone
pdb|3UYL|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With
Thymidine Diphosphate
pdb|3UYL|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With
Thymidine Diphosphate
Length = 387
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 275 CFLTHC--GWNSTMEALGLGVPMLAMPQWSDQSTNAKYIMDVGKMGLKVPADEKGIVRRE 332
C L C G + A LG+P L +PQ+ DQ A+ + G G+ +P DE+ E
Sbjct: 287 CELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGA-GICLP-DEQAQSDHE 344
Query: 333 AIAHCINEILEGERG 347
I +L G+ G
Sbjct: 345 QFTDSIATVL-GDTG 358
>pdb|3TSA|A Chain A, Spinosyn Rhamnosyltransferase Spng
pdb|3TSA|B Chain B, Spinosyn Rhamnosyltransferase Spng
Length = 391
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 275 CFLTHC--GWNSTMEALGLGVPMLAMPQWSDQSTNAKYIMDVGKMGLKVPADEKGIVRRE 332
C L C G + A LG+P L +PQ+ DQ A+ + G G+ +P DE+ E
Sbjct: 287 CELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGA-GICLP-DEQAQSDHE 344
Query: 333 AIAHCINEILEGERG 347
I +L G+ G
Sbjct: 345 QFTDSIATVL-GDTG 358
>pdb|1HX1|B Chain B, Crystal Structure Of A Bag Domain In Complex With The
Hsc70 Atpase Domain
pdb|3FZF|B Chain B, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP
pdb|3FZH|B Chain B, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3FZK|B Chain B, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3FZL|B Chain B, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3FZM|B Chain B, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3LDQ|B Chain B, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH SMALL
MOLECULE Inhibitor
pdb|3M3Z|B Chain B, Crystal Structure Of Hsc70/bag1 In Complex With Small
Molecule Inhibitor
Length = 114
Score = 28.1 bits (61), Expect = 8.8, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 213 LKMEQMEELAWGLKASDKYFLWVVRESEQSKLPENFSDET-SQKGLV 258
L+ E + +L +KA+ + F+ ++ E + LPENF D +KGLV
Sbjct: 46 LQAEALCKLDRRVKATIEQFMKILEEIDTLILPENFKDSRLKRKGLV 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,263,836
Number of Sequences: 62578
Number of extensions: 466395
Number of successful extensions: 962
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 931
Number of HSP's gapped (non-prelim): 30
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)