BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048394
(485 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein At1g02370,
mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2
SV=1
Length = 537
Score = 449 bits (1154), Expect = e-125, Method: Compositional matrix adjust.
Identities = 234/475 (49%), Positives = 309/475 (65%), Gaps = 7/475 (1%)
Query: 16 LVRQLCSTPTETVSQRIAAPTPFPTGNEDKLYKRLSALGATGGSVTGALNAYIMEGKTVR 75
+V S+P R + P + +LYK+LS L TGG+V LN +IMEG TVR
Sbjct: 43 VVEASVSSPAAENGVRTSVAAPTVASRQRELYKKLSMLSVTGGTVAETLNQFIMEGITVR 102
Query: 76 KDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFN 135
KD L C ++LRKF R +HA E+ +WME RKM FS +D A+ LDL KT G+ AAE YFN
Sbjct: 103 KDDLFRCAKTLRKFRRPQHAFEIFDWMEKRKMTFSVSDHAICLDLIGKTKGLEAAENYFN 162
Query: 136 GLSEYAKN-RYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQ 194
L AKN + TYGAL+NCYC EL E+A A FE MDEL F+ N++ FNN+ +MY+RL Q
Sbjct: 163 NLDPSAKNHQSTYGALMNCYCVELEEEKAKAHFEIMDELNFVNNSLPFNNMMSMYMRLSQ 222
Query: 195 PEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYS 254
PEKV LV+ MKQR IS +TY +WMQS LND+DG+E++ EM + E K W T+S
Sbjct: 223 PEKVPVLVDAMKQRGISPCGVTYSIWMQSCGSLNDLDGLEKIIDEMGKDSEAKTTWNTFS 282
Query: 255 NLASIYVKAELFEKAELALKKLEE-MKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKST 313
NLA+IY KA L+EKA+ ALK +EE M P +R ++HFL+SLY S V RVW LK
Sbjct: 283 NLAAIYTKAGLYEKADSALKSMEEKMNPNNRDSHHFLMSLYAGISKGPEVYRVWESLKKA 342
Query: 314 FPPTNT-SYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEA 372
P N SYLV+LQA++KL +D +K+ F EWES+C +YDMRLA++ I YL+ +MYEEA
Sbjct: 343 RPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEWESKCWAYDMRLANIAINTYLKGNMYEEA 402
Query: 373 ALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQF--HWRPMQV 430
I + A K++ F K+R+ MI+ L + + DLA+ +EAA+S++ + W
Sbjct: 403 EKILDGAMKKSKGP--FSKARQLLMIHLLENDKADLAMKHLEAAVSDSAENKDEWGWSSE 460
Query: 431 TVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDMRQ 485
V FF FE+ KDVDGAE+FCK+L + LD + LIKTY AA K + DMR+
Sbjct: 461 LVSLFFLHFEKAKDVDGAEDFCKILSNWKPLDSETMTFLIKTYAAAEKTSPDMRE 515
>sp|Q93WC5|PP300_ARATH Pentatricopeptide repeat-containing protein At4g01990,
mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2
SV=1
Length = 502
Score = 411 bits (1056), Expect = e-114, Method: Compositional matrix adjust.
Identities = 223/485 (45%), Positives = 313/485 (64%), Gaps = 13/485 (2%)
Query: 9 LISTGSYLVRQLCST---PTETVSQRIAAPTPFPTGNEDKLYKRLSALGATGGS-VTGAL 64
++ + S L R+ C+T T +S AA P +YK+LS+LG GG + L
Sbjct: 1 MMHSVSRLARRFCATLATATAEISGEAAASVPTKAKKHRSIYKKLSSLGTRGGGKMEETL 60
Query: 65 NAYIMEGKTVRK-DMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAK 123
N ++MEG V+K D++ Y + LRKF + + ALE+ EWME +++ F+ +D A+ L+L AK
Sbjct: 61 NQFVMEGVPVKKHDLIRY-AKDLRKFRQPQRALEIFEWMERKEIAFTGSDHAIRLNLIAK 119
Query: 124 TNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFN 183
+ G+ AAE YFN L + KN+ TYG+LLNCYC E +A A FE M +L + N++ FN
Sbjct: 120 SKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVKAKAHFENMVDLNHVSNSLPFN 179
Query: 184 NLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNE 243
NL MY+ LGQPEKV LV MK+++I+ ++TY +W+QS L D+DGVE+V EM E
Sbjct: 180 NLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVEKVLDEMKAE 239
Query: 244 CEDKCRWTTYSNLASIYVKAELFEKAELALKKLE-EMKPRDRKAYHFLISLYCNTSNLDA 302
E W T++NLA+IY+K L+ KAE ALK LE M P R YHFLI+LY +N
Sbjct: 240 GEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLENNMNPDVRDCYHFLINLYTGIANASE 299
Query: 303 VNRVWGILKSTFPPT-NTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIR 361
V RVW +LK +P N+SYL +L+AL+KL+ ID +K+ F EWES C +YDMR+A+V I
Sbjct: 300 VYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKVFAEWESTCWTYDMRMANVAIS 359
Query: 362 AYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAA-LSEA 420
+YL+++MYEEA +FN A K+ +F K+R+ M++ L++ Q DLAL EAA L +
Sbjct: 360 SYLKQNMYEEAEAVFNGAMKKCK--GQFSKARQLLMMHLLKNDQADLALKHFEAAVLDQD 417
Query: 421 KQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLA 480
K + W ++ +FF FEE KDVDGAEEFCK L + L Y+LL+KTY+AAGK
Sbjct: 418 KNWTWSSELIS--SFFLHFEEAKDVDGAEEFCKTLTKWSPLSSETYTLLMKTYLAAGKAC 475
Query: 481 SDMRQ 485
DM++
Sbjct: 476 PDMKK 480
>sp|O22714|PPR86_ARATH Pentatricopeptide repeat-containing protein At1g60770
OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1
Length = 491
Score = 310 bits (794), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 186/452 (41%), Positives = 265/452 (58%), Gaps = 15/452 (3%)
Query: 43 EDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWM 102
E+ LY RL G T V LN ++ K V K + ++ LR G Y AL++ E M
Sbjct: 22 EEPLYNRLFKDGGTEVKVRQQLNQFLKGTKHVFKWEVGDTIKKLRNRGLYYPALKLSEVM 81
Query: 103 ESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTER 162
E R M+ + +D A++LDL AK I A E YF L E +K TYG+LLNCYCKEL+TE+
Sbjct: 82 EERGMNKTVSDQAIHLDLVAKAREITAGENYFVDLPETSKTELTYGSLLNCYCKELLTEK 141
Query: 163 ALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQ 222
A L KM EL +++++N+L T+Y + G+ EKV ++ ++K N+ D+ TY VWM+
Sbjct: 142 AEGLLNKMKELNITPSSMSYNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYNVWMR 201
Query: 223 SYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMK-- 280
+ + NDI GVERV EM + WTTYSN+ASIYV A L +KAE AL++L EMK
Sbjct: 202 ALAATNDISGVERVIEEMNRDGRVAPDWTTYSNMASIYVDAGLSQKAEKALQEL-EMKNT 260
Query: 281 PRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPT-NTSYLVLLQALAKLNAIDILKQ 339
RD AY FLI+LY L V R+W L+ P T N +YL ++Q L KLN + +
Sbjct: 261 QRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPGAET 320
Query: 340 CFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRA---NASARFFKSRESF 396
F+EW++ CS+YD+R+ +V+I AY Q+ + ++A + A +R NA K+ E F
Sbjct: 321 LFKEWQANCSTYDIRIVNVLIGAYAQEGLIQKANELKEKAPRRGGKLNA-----KTWEIF 375
Query: 397 MIYYLRSRQLDLALNEMEAALSEAK--QFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKV 454
M YY++S + AL M A+S K W P TV +FE++KDV+GAE ++
Sbjct: 376 MDYYVKSGDMARALECMSKAVSIGKGDGGKWLPSPETVRALMSYFEQKKDVNGAENLLEI 435
Query: 455 LKS-LNCLDFSAYSLLIKTYIAAGKLASDMRQ 485
LK+ + + + LI+TY AAGK MR+
Sbjct: 436 LKNGTDNIGAEIFEPLIRTYAAAGKSHPAMRR 467
>sp|Q8LPS6|PPR3_ARATH Pentatricopeptide repeat-containing protein At1g02150
OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2
Length = 524
Score = 231 bits (589), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 142/436 (32%), Positives = 233/436 (53%), Gaps = 6/436 (1%)
Query: 39 PTGNEDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEV 98
P + +YK++S + LN + G+ + K L V+ LRK+ R ALEV
Sbjct: 62 PIVQWNAIYKKISLMEKPELGAASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQALEV 121
Query: 99 IEWMESRKMHF--SYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCK 156
+WM +R F S +D A+ LDL K GI AE++F L E K+R YG+LLN Y +
Sbjct: 122 YDWMNNRGERFRLSASDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVR 181
Query: 157 ELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLT 216
E+A AL M + + + + FN + T+Y+ L + +KV +V +MKQ++I LD +
Sbjct: 182 AKSREKAEALLNTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYS 241
Query: 217 YIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKL 276
Y +W+ S L ++ +E V+ +M ++ WTT+S +A++Y+K EKAE AL+K+
Sbjct: 242 YNIWLSSCGSLGSVEKMELVYQQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRKV 301
Query: 277 E-EMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP-TNTSYLVLLQALAKLNAI 334
E + R+R YH+L+SLY + N + RVW + KS P N Y L+ +L ++ I
Sbjct: 302 EARITGRNRIPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDI 361
Query: 335 DILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRE 394
+ ++ +EEW SSYD R+ ++++ AY++ D E A +F++ + + + E
Sbjct: 362 EGAEKVYEEWLPVKSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSS--STWE 419
Query: 395 SFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKV 454
+ + R R + AL + A S +WRP + + FF+ EEE DV E ++
Sbjct: 420 ILAVGHTRKRCISEALTCLRNAFSAEGSSNWRPKVLMLSGFFKLCEEESDVTSKEAVLEL 479
Query: 455 LKSLNCLDFSAYSLLI 470
L+ L+ +Y LI
Sbjct: 480 LRQSGDLEDKSYLALI 495
>sp|Q9SY07|PP302_ARATH Pentatricopeptide repeat-containing protein At4g02820,
mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2
SV=1
Length = 532
Score = 228 bits (582), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 146/445 (32%), Positives = 244/445 (54%), Gaps = 11/445 (2%)
Query: 40 TGNEDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVI 99
G D L RL +L T S + + EG +VRK L VR LRK RY+HALE+
Sbjct: 57 VGGRDTLGGRLLSLVYTKRSAVVTIRKWKEEGHSVRKYELNRIVRELRKIKRYKHALEIC 116
Query: 100 EWMESRK-MHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKEL 158
EWM ++ + D+AV+LDL +K G+ +AEK+F + + + +LL+ Y +
Sbjct: 117 EWMVVQEDIKLQAGDYAVHLDLISKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNK 176
Query: 159 MTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYI 218
++++A ALFEKM E FL + + +N++ +MY+ GQ EKV L+ ++K R S D +TY
Sbjct: 177 LSDKAEALFEKMGECGFLKSCLPYNHMLSMYISRGQFEKVPVLIKELKIRT-SPDIVTYN 235
Query: 219 VWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEE 278
+W+ +++ ND++G E+V+ + E + W TYS L ++Y K + EKA LALK++E+
Sbjct: 236 LWLTAFASGNDVEGAEKVYLK-AKEEKLNPDWVTYSVLTNLYAKTDNVEKARLALKEMEK 294
Query: 279 M-KPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTS-YLVLLQALAKLNAIDI 336
+ ++R AY LISL+ N + D VN W +KS+F N + YL ++ A+ KL +
Sbjct: 295 LVSKKNRVAYASLISLHANLGDKDGVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQ 354
Query: 337 LKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNN-AKKRANASARFFKSRES 395
K ++EWES + D R+ ++I+ Y+ +D + +K N S + + E
Sbjct: 355 AKGLYDEWESVSGTGDARIPNLILAEYMNRDEVLLGEKFYERIVEKGINPS---YSTWEI 411
Query: 396 FMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVL 455
YL+ + ++ L+ A+ K+ W V + EE+ +V GAE+ +L
Sbjct: 412 LTWAYLKRKDMEKVLDCFGKAIDSVKK--WTVNVRLVKGACKELEEQGNVKGAEKLMTLL 469
Query: 456 KSLNCLDFSAYSLLIKTYIAAGKLA 480
+ ++ Y+ L++TY AG++A
Sbjct: 470 QKAGYVNTQLYNSLLRTYAKAGEMA 494
>sp|Q9SKU6|PP166_ARATH Pentatricopeptide repeat-containing protein At2g20710,
mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2
SV=1
Length = 490
Score = 218 bits (554), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 133/447 (29%), Positives = 236/447 (52%), Gaps = 13/447 (2%)
Query: 36 TPFPTGNEDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHA 95
TP P D L +R++ G S+ L+ ++ +G V+ L ++ LRKF R+ HA
Sbjct: 30 TPSPLDPYDTLQRRVARSGDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHA 89
Query: 96 LEVIEWMESRKMH-FSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCY 154
L++ +WM ++H S D A+ LDL AK G+ AEK+F + +N + YGALLNCY
Sbjct: 90 LQISDWMSEHRVHEISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCY 149
Query: 155 CKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDN 214
+ + +A +F++M EL FL + +N + +Y+R G+ V L+ +M+ + D
Sbjct: 150 ASKKVLHKAEQVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDI 209
Query: 215 LTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALK 274
T + +YS ++D++G+E+ + W TY++ A+ Y+KA L EKA L+
Sbjct: 210 FTVNTRLHAYSVVSDVEGMEKFLMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLR 269
Query: 275 KLEEM--KPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLN 332
K E+M + + AY L+S Y + V R+W + K NT Y+ ++ AL K++
Sbjct: 270 KSEQMVNAQKRKHAYEVLMSFYGAAGKKEEVYRLWSLYKELDGFYNTGYISVISALLKMD 329
Query: 333 AIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFN--NAKKRANASARFF 390
I+ +++ EEWE+ S +D+R+ ++I Y +K M E+A + N K R ++ +
Sbjct: 330 DIEEVEKIMEEWEAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTW- 388
Query: 391 KSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEE 450
E + Y + +++ A+ + + A+ E + WRP QV + + + E ++D++G
Sbjct: 389 ---ERLALGYKMAGKMEKAVEKWKRAI-EVSKPGWRPHQVVLMSCVDYLEGQRDMEG--- 441
Query: 451 FCKVLKSLNCLDFSAYSLLIKTYIAAG 477
K+L+ L+ +Y L+ AG
Sbjct: 442 LRKILRLLSERGHISYDQLLYDMNGAG 468
>sp|Q84JR3|PP334_ARATH Pentatricopeptide repeat-containing protein At4g21705,
mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2
SV=1
Length = 492
Score = 216 bits (549), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 138/436 (31%), Positives = 222/436 (50%), Gaps = 6/436 (1%)
Query: 46 LYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWM-ES 104
LY ++S LG SV L ++ GK V L V LR+ R+ HALEV +WM E+
Sbjct: 27 LYSKISPLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRRKRFLHALEVSKWMNET 86
Query: 105 RKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERAL 164
FS T+ AV+LDL + G AE+YF L E KN TYGALLNCY ++ E++L
Sbjct: 87 GVCVFSPTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQNVEKSL 146
Query: 165 ALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSY 224
FEKM E+ F+ +++ +NN+ +Y +GQ EKV ++ +MK+ N++ DN +Y + + ++
Sbjct: 147 LHFEKMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRICINAF 206
Query: 225 SHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLE-EMKPRD 283
+ D++ + +M + W TY+ A Y+ ++A LK E ++ +D
Sbjct: 207 GAMYDLERIGGTLRDMERRQDITMDWNTYAVAAKFYIDGGDCDRAVELLKMSENRLEKKD 266
Query: 284 RKAYHFLISLYCNTSNLDAVNRVWGILKSTFP-PTNTSYLVLLQALAKLNAIDILKQCFE 342
+ Y+ LI+LY V R+W + K N YL +LQ+L K++A+ ++
Sbjct: 267 GEGYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSLVKIDALVEAEEVLT 326
Query: 343 EWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLR 402
EW+S + YD R+ + +IR Y+ K M E+A + + +R A+ +S E Y
Sbjct: 327 EWKSSGNCYDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKATTP--ESWELVATAYAE 384
Query: 403 SRQLDLALNEMEAALS-EAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCL 461
L+ A M+ AL E WRP V + + +E + E F L++ +
Sbjct: 385 KGTLENAFKCMKTALGVEVGSRKWRPGLTLVTSVLSWVGDEGSLKEVESFVASLRNCIGV 444
Query: 462 DFSAYSLLIKTYIAAG 477
+ Y L+K I G
Sbjct: 445 NKQMYHALVKADIREG 460
>sp|Q3E911|PP400_ARATH Pentatricopeptide repeat-containing protein At5g27460
OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1
Length = 491
Score = 204 bits (519), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 132/432 (30%), Positives = 224/432 (51%), Gaps = 9/432 (2%)
Query: 59 SVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRK-MHFSYTDFAVY 117
SVT L I G V L + L + RY AL+++EWME++K + FS D A+
Sbjct: 53 SVTSLLQERIDSGHAVSLSELRLISKRLIRSNRYDLALQMMEWMENQKDIEFSVYDIALR 112
Query: 118 LDLTAKTNGIAAAEKYFNGLSEYAKN----RYTYGALLNCYCKELMTERALALFEKMDEL 173
LDL KT+G+ E+YF L + + + Y LL Y K M + A AL EK++ L
Sbjct: 113 LDLIIKTHGLKQGEEYFEKLLHSSVSMRVAKSAYLPLLRAYVKNKMVKEAEALMEKLNGL 172
Query: 174 KFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGV 233
FL FN + +Y GQ EKV +V+ MK I + L+Y +WM + ++ + V
Sbjct: 173 GFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYNLWMNACCEVSGVAAV 232
Query: 234 ERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPR-DRKAYHFLIS 292
E V+ EM + + W++ LA++Y+K+ EKA L L+ E+M R +R Y FLI+
Sbjct: 233 ETVYKEMVGDKSVEVGWSSLCTLANVYIKSGFDEKARLVLEDAEKMLNRSNRLGYFFLIT 292
Query: 293 LYCNTSNLDAVNRVWGILKSTFPPTN-TSYLVLLQALAKLNAIDILKQCFEEWESRCSSY 351
LY + N + V R+W + KS + +Y+ +L +L K ++ ++ F EWE++C +Y
Sbjct: 293 LYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDLEEAERVFSEWEAQCFNY 352
Query: 352 DMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALN 411
D+R+++V++ AY++ +A + +R +K+ E M +++ ++ A++
Sbjct: 353 DVRVSNVLLGAYVRNGEIRKAESLHGCVLERGGTPN--YKTWEILMEGWVKCENMEKAID 410
Query: 412 EMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIK 471
M ++ HWRP V +FE+E+ ++ A + + L L Y LL++
Sbjct: 411 AMHQVFVLMRRCHWRPSHNIVMAIAEYFEKEEKIEEATAYVRDLHRLGLASLPLYRLLLR 470
Query: 472 TYIAAGKLASDM 483
+ A + A D+
Sbjct: 471 MHEHAKRPAYDI 482
>sp|Q94B59|PP372_ARATH Pentatricopeptide repeat-containing protein At5g09450,
mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2
SV=1
Length = 409
Score = 156 bits (394), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 102/329 (31%), Positives = 172/329 (52%), Gaps = 10/329 (3%)
Query: 43 EDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWM 102
+D L R+ L S T L +I EG + + L + LR+ RY+HALEV EWM
Sbjct: 54 KDDLKSRIFRLRLPKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEVTEWM 113
Query: 103 -ESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTE 161
+ + S D+A +DL +K GI AAE+YF GL +K TY +LL+ Y TE
Sbjct: 114 VQHEESKISDADYASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTE 173
Query: 162 RALALFEKM---DELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYI 218
RA ALF+++ D L F + +N + T+Y+ +GQ EKV ++ +KQ+ +S D TY
Sbjct: 174 RAEALFKRIIESDSLTF--GAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYN 231
Query: 219 VWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAE--LALKKL 276
+W+ S + +ID + ++ EM ++ W Y +L SIY+ + AE L ++
Sbjct: 232 LWLSSCAATFNIDELRKILEEMRHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEAE 291
Query: 277 EEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP-TNTSYLVLLQALAKLNAID 335
+ + R+ Y FL+ L+ N ++++W L++T ++ SY+ +L + L +
Sbjct: 292 KSISQREWITYDFLMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLR 351
Query: 336 ILKQCFEEW-ESRCSSYDMRLADVIIRAY 363
++ +W ES+ + +D I+ A+
Sbjct: 352 EAEEIIHQWKESKTTEFDASACLRILNAF 380
>sp|Q9C7F1|PPR61_ARATH Putative pentatricopeptide repeat-containing protein At1g28020
OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2
Length = 566
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/326 (27%), Positives = 156/326 (47%), Gaps = 5/326 (1%)
Query: 58 GSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKM-HFSYTDFAV 116
+ L + +G V + ++ LR + AL+V EWM K+ + DFA
Sbjct: 50 AQIIPVLEQWRQQGNQVNPSHVRVIIKKLRDSDQSLQALQVSEWMSKEKICNLIPEDFAA 109
Query: 117 YLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTE-RALALFEKMDELKF 175
L L G+ AEK+F + + A+ Y +LLN Y + T +A A F+KM +L
Sbjct: 110 RLHLIENVVGLEEAEKFFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDLGL 169
Query: 176 LGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVER 235
L V +N + ++Y L EKV L+ +MK ++ DN+T ++ YS + D+ +E+
Sbjct: 170 LLRPVPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEMEK 229
Query: 236 VFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRD--RKAYHFLISL 293
+ K W T ++A Y++A KA L+ E++ + + AY L+ L
Sbjct: 230 FLNKWEGIHGIKLEWHTTLDMAKAYLRARSSGKAMKMLRLTEQLVDQKSLKSAYDHLMKL 289
Query: 294 YCNTSNLDAVNRVWGILKSTFPP-TNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYD 352
Y N + V RVW + KS N Y ++++L K++ I ++ ++ WES +D
Sbjct: 290 YGEAGNREEVLRVWKLYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKVWESLPLEFD 349
Query: 353 MRLADVIIRAYLQKDMYEEAALIFNN 378
R+ ++ Y + M E+A + N+
Sbjct: 350 HRIPTMLASGYRDRGMTEKAEKLMNS 375
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 84/200 (42%), Gaps = 34/200 (17%)
Query: 71 GKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKM-HFSYTDFAVYLDLTAKTNGIAA 129
G ++ L+ +++LR ++ AL+V EWM +++ + D+A L LT G+
Sbjct: 395 GDQMKPSDLKCLIKNLRDSKQFSKALQVSEWMGEKQVCNLYLEDYAARLYLTENVLGLEE 454
Query: 130 AEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMY 189
AEKYF + E K+ Y ALL+ Y K K LGN V
Sbjct: 455 AEKYFENIPENMKDYSVYVALLSSYAK---------------SDKNLGNMVD-------- 491
Query: 190 LRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCR 249
++ +M++ N+ D +T ++ Y+ + I +E E K
Sbjct: 492 ----------EILREMEENNVDPDLITVNHVLKVYAAESKIQAMEMFMRRWGTEDGIKLE 541
Query: 250 WTTYSNLASIYVKAELFEKA 269
T +A YVKA L +K+
Sbjct: 542 RGTMIAMAKAYVKAGLTKKS 561
>sp|Q9C977|PP135_ARATH Pentatricopeptide repeat-containing protein At1g80270,
mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=1
SV=1
Length = 596
Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 113/440 (25%), Positives = 207/440 (47%), Gaps = 22/440 (5%)
Query: 53 LGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMES-RKMHFSY 111
+ A G S+ AL+ ++ EG + + + + LR+ Y AL++ EW+E+ +K+ +
Sbjct: 137 VSAPGLSIGSALDKWVEEGNEITRVEIAKAMLQLRRRRMYGRALQMSEWLEANKKIEMTE 196
Query: 112 TDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALL-NCYCKELMTERALALFEKM 170
D+A LDLT K G+ E + + K Y LL NC + + L +F KM
Sbjct: 197 RDYASRLDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVAAGNVKKSEL-VFNKM 255
Query: 171 DELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDI 230
+L F + + + ++ R+ + +K+ ++ M++ NI LTY + + NDI
Sbjct: 256 KDLGFPLSGFTCDQMLLLHKRIDR-KKIADVLLLMEKENIKPSLLTYKILIDVKGATNDI 314
Query: 231 DGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLE-EMKPRDRKAYHF 289
G+E++ M +E + + T + A Y A L +KAE LK++E E +R+A+
Sbjct: 315 SGMEQILETMKDEGVE-LDFQTQALTARHYSGAGLKDKAEKVLKEMEGESLEANRRAFKD 373
Query: 290 LISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFE---EWES 346
L+S+Y + D V R+W I +S P L +QA KLN + + FE + +
Sbjct: 374 LLSIYASLGREDEVKRIWKICES--KPYFEESLAAIQAFGKLNKVQEAEAIFEKIVKMDR 431
Query: 347 RCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSR-ESFMIYYLRSRQ 405
R SS V++R Y+ M + + K+ A + R + ++ + Y+ + +
Sbjct: 432 RASSSTY---SVLLRVYVDHKMLSKGKDLV---KRMAESGCRIEATTWDALIKLYVEAGE 485
Query: 406 LDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEE-FCKVLKSLNCLDFS 464
++ A + ++ A +KQ H + M + + + DV E+ F K+ ++
Sbjct: 486 VEKADSLLDKA---SKQSHTKLMMNSFMYIMDEYSKRGDVHNTEKIFLKMREAGYTSRLR 542
Query: 465 AYSLLIKTYIAAGKLASDMR 484
+ L++ YI A A MR
Sbjct: 543 QFQALMQAYINAKSPAYGMR 562
>sp|Q9XI21|PPR44_ARATH Pentatricopeptide repeat-containing protein At1g15480,
mitochondrial OS=Arabidopsis thaliana GN=At1g15480 PE=2
SV=2
Length = 594
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 106/437 (24%), Positives = 195/437 (44%), Gaps = 14/437 (3%)
Query: 53 LGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWM-ESRKMHFSY 111
+ +G SV AL+ ++ +GK + E + LRK + AL++ EW+ E+++
Sbjct: 135 VSVSGLSVGSALDKWVEQGKDTNRKEFESAMLQLRKRRMFGRALQMTEWLDENKQFEMEE 194
Query: 112 TDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMD 171
D+A LDL +K G E Y + E + Y LL + A A+F KM
Sbjct: 195 RDYACRLDLISKVRGWYKGEAYIKTIPESFRGELVYRTLLANHVATSNVRTAEAVFNKMK 254
Query: 172 ELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDID 231
+L F +T N + +Y R+ + +K+ ++ +++ N+ + TY + + + NDI
Sbjct: 255 DLGFPLSTFTCNQMLILYKRVDK-KKIADVLLLLEKENLKPNLNTYKILIDTKGSSNDIT 313
Query: 232 GVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLE-EMKPRDRKAYHFL 290
G+E++ M +E + + +A Y A L EKAE LK++E E +R L
Sbjct: 314 GMEQIVETMKSEGVE-LDLRARALIARHYASAGLKEKAEKVLKEMEGESLEENRHMCKDL 372
Query: 291 ISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSS 350
+S+Y D V RVW I + P L + A K++ + + FE+
Sbjct: 373 LSVYGYLQREDEVRRVWKICEEN--PRYNEVLAAILAFGKIDKVKDAEAVFEKVLKMSHR 430
Query: 351 YDMRLADVIIRAYLQKDMYEEAA-LIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLA 409
+ V++R Y+ M E L+ + N A + ++ + Y+ + +++ A
Sbjct: 431 VSSNVYSVLLRVYVDHKMVSEGKDLVKQMSDSGCNIGALTW---DAVIKLYVEAGEVEKA 487
Query: 410 LNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLD-FSAYSL 468
+ + A+ ++KQ +P+ + + DV E+ + +K F AY
Sbjct: 488 ESSLSKAI-QSKQI--KPLMSSFMYLMHEYVRRGDVHNTEKIFQRMKQAGYQSRFWAYQT 544
Query: 469 LIKTYIAAGKLASDMRQ 485
LI+ Y+ A A M++
Sbjct: 545 LIQAYVNAKAPAYGMKE 561
>sp|Q940Q2|PPR19_ARATH Pentatricopeptide repeat-containing protein At1g07590,
mitochondrial OS=Arabidopsis thaliana GN=At1g07590 PE=2
SV=1
Length = 534
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 93/430 (21%), Positives = 190/430 (44%), Gaps = 17/430 (3%)
Query: 57 GGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEW-MESRKMHFSYTDFA 115
G +V AL +++ +G V + + + LRK GR + ALE++EW + R +++
Sbjct: 78 GVTVGSALQSWMGDGFPVHGGDVYHAINRLRKLGRNKRALELMEWIIRERPYRLGELEYS 137
Query: 116 VYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKF 175
L+ T K +G++ EK F + + +N Y L+ + + AL +KM EL +
Sbjct: 138 YLLEFTVKLHGVSQGEKLFTRVPQEFQNELLYNNLVIACLDQGVIRLALEYMKKMRELGY 197
Query: 176 LGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVER 235
+ + +N L G+ + + + MK + TY + M+ ++ ++IDGV +
Sbjct: 198 RTSHLVYNRLIIRNSAPGRRKLIAKDLALMKADKATPHVSTYHILMKLEANEHNIDGVLK 257
Query: 236 VFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDR-KAYHFLISLY 294
F M + + +Y LA + A L+ AE +++E+ D L+ LY
Sbjct: 258 AFDGM-KKAGVEPNEVSYCILAMAHAVARLYTVAEAYTEEIEKSITGDNWSTLDILMILY 316
Query: 295 CNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMR 354
+ R W +++ + SYL+ +A A++ +D ++ + E ++ +
Sbjct: 317 GRLGKEKELARTWNVIRGFHHVRSKSYLLATEAFARVGNLDRAEELWLEMKNVKGLKETE 376
Query: 355 LADVIIRAYLQKDMYEEAALIF----NNAKKRANASARFFK---SRESFMIYYLRSRQLD 407
+ ++ Y + + E+A +F N K + + R ++ M L++ ++
Sbjct: 377 QFNSLLSVYCKDGLIEKAIGVFREMTGNGFKPNSITYRHLALGCAKAKLMKEALKNIEMG 436
Query: 408 LALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFS-AY 466
L L ++ S P T + F E+ DV+ +E+ + +K+ ++ Y
Sbjct: 437 LNLKTSKSIGSST------PWLETTLSIIECFAEKGDVENSEKLFEEVKNAKYNRYAFVY 490
Query: 467 SLLIKTYIAA 476
+ L K Y+ A
Sbjct: 491 NALFKAYVKA 500
>sp|Q9LRP6|PP234_ARATH Pentatricopeptide repeat-containing protein At3g15590,
mitochondrial OS=Arabidopsis thaliana GN=At3g15590 PE=2
SV=1
Length = 610
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 120/251 (47%), Gaps = 6/251 (2%)
Query: 59 SVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESR-KMHFSYTDFAVY 117
SV L ++ EGK + + + + +LRK Y L++ EW+ + + F+ ++A
Sbjct: 156 SVKHVLEKWVKEGKDLSQAEVTLAIHNLRKRKSYAMCLQLWEWLGANTQFEFTEANYASQ 215
Query: 118 LDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALL-NCYCKELMTERALALFEKMDELKFL 176
LDL AK + + AE + + E ++ Y LL NC K + +A +F KM ELKF
Sbjct: 216 LDLVAKVHSLQKAEIFLKDIPESSRGEVVYRTLLANCVLKHHVN-KAEDIFNKMKELKFP 274
Query: 177 GNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERV 236
+ A N L +Y + +K+ ++ M++ NI TY + S DI G+E++
Sbjct: 275 TSVFACNQLLLLY-SMHDRKKISDVLLLMERENIKPSRATYHFLINSKGLAGDITGMEKI 333
Query: 237 FYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRK-AYHFLISLYC 295
E E + S LA Y++A L E+A+ +K++E + L+ LY
Sbjct: 334 V-ETIKEEGIELDPELQSILAKYYIRAGLKERAQDLMKEIEGKGLQQTPWVCRSLLPLYA 392
Query: 296 NTSNLDAVNRV 306
+ + D V R+
Sbjct: 393 DIGDSDNVRRL 403
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 117/250 (46%), Gaps = 9/250 (3%)
Query: 59 SVTGALNAYI-MEGKTVRKDMLEY--CVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFA 115
+V ALN + M+ K +R +++ Y +R L +GR+ A ++ M RK++ + F+
Sbjct: 270 NVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFS 329
Query: 116 VYLDLTAKTNGIAAAEKYFNGLSEYA--KNRYTYGALLNCYCKELMTERALALFEKMDEL 173
+D K + AEK ++ + + + + +TY +L+N +C + A +FE M
Sbjct: 330 ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK 389
Query: 174 KFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGV 233
N V +N L + + + E+ L +M QR + + +TY +Q D D
Sbjct: 390 DCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMA 449
Query: 234 ERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLE--EMKPRDRKAYHFLI 291
+++F +M ++ TYS L K EKA + + L+ +M+P D Y+ +I
Sbjct: 450 QKIFKKMVSDGVPP-DIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEP-DIYTYNIMI 507
Query: 292 SLYCNTSNLD 301
C ++
Sbjct: 508 EGMCKAGKVE 517
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 88/415 (21%), Positives = 161/415 (38%), Gaps = 26/415 (6%)
Query: 69 MEGKTVRKDMLEY--CVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNG 126
M + + D+ Y V L K G AL +++ ME K+ + +D
Sbjct: 211 MVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKN 270
Query: 127 IAAAEKYFNGLSEYA--KNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNN 184
+ A F + N TY +L+ C C A L M E K N V F+
Sbjct: 271 VNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 330
Query: 185 LSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNEC 244
L +++ G+ + L ++M +R+I D TY + + + +D + +F M ++
Sbjct: 331 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK- 389
Query: 245 EDKC--RWTTYSNLASIYVKAELFEKAELALKKLEEMKPR----DRKAYHFLISLYCNTS 298
C TY+ L + KA+ + E ++ EM R + Y+ LI
Sbjct: 390 --DCFPNVVTYNTLIKGFCKAK---RVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAG 444
Query: 299 NLDAVNRVWG-ILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLAD 357
+ D +++ ++ PP +Y +LL L K ++ FE + D+ +
Sbjct: 445 DCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYN 504
Query: 358 VIIRAYLQKDMYEEAALIFNN-AKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAA 416
++I + E+ +F + + K + + + MI + L E +A
Sbjct: 505 IMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTT----MISGFCRKGLK---EEADAL 557
Query: 417 LSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCL-DFSAYSLLI 470
E K+ P T +T R + D + E K ++S + D S S++I
Sbjct: 558 FREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVI 612
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 90/398 (22%), Positives = 166/398 (41%), Gaps = 29/398 (7%)
Query: 100 EWMESRKMHFSYTDFAVYLDLTAKTNG----IAAAEKYFNGLSEYAKNRYTYGALLNCYC 155
E ++SR + S +F L AK N I+ E+ N Y + Y+Y L+NC+C
Sbjct: 70 EMVQSRPLP-SIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISY--DLYSYNILINCFC 126
Query: 156 KELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQM-----KQRNI 210
+ ALA+ KM +L + + V ++L Y + + LV+QM + +
Sbjct: 127 RRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTV 186
Query: 211 SLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAE 270
+ + L + +++ + + + ++R+ C TY + + K + A
Sbjct: 187 TFNTLIHGLFLHNKAS-EAVALIDRMVARGCQP-----DLFTYGTVVNGLCKRGDIDLAL 240
Query: 271 LALKKLEEMKPR-DRKAYHFLISLYCNTSNL-DAVNRVWGILKSTFPPTNTSYLVLLQAL 328
LKK+E+ K D Y +I CN N+ DA+N + P +Y L++ L
Sbjct: 241 SLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 300
Query: 329 AKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASAR 388
+ + R + ++ +I A++++ EA +++ KR+
Sbjct: 301 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 360
Query: 389 FFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDV-DG 447
F S S + + +LD A + E +S+ P VT +T + F + K V +G
Sbjct: 361 FTYS--SLINGFCMHDRLDEAKHMFELMISK----DCFPNVVTYNTLIKGFCKAKRVEEG 414
Query: 448 AEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDMRQ 485
E F ++ + + Y+ LI+ AG DM Q
Sbjct: 415 MELFREMSQRGLVGNTVTYNTLIQGLFQAGD--CDMAQ 450
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 72/326 (22%), Positives = 139/326 (42%), Gaps = 11/326 (3%)
Query: 59 SVTGALNAYI-MEGKTVRKDMLEY--CVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFA 115
+V ALN + M+ K +R +++ Y +R L +GR+ A ++ M RK++ + F+
Sbjct: 271 NVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFS 330
Query: 116 VYLDLTAKTNGIAAAEKYFNGLSEYA--KNRYTYGALLNCYCKELMTERALALFEKMDEL 173
+D K + AEK ++ + + + + +TY +L+N +C + A +FE M
Sbjct: 331 ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK 390
Query: 174 KFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGV 233
N V +N L + + + ++ L +M QR + + +TY + + + D
Sbjct: 391 DCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNA 450
Query: 234 ERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLE--EMKPRDRKAYHFLI 291
+ VF +M ++ TYS L E A + + L+ +M+P D Y+ +I
Sbjct: 451 QIVFKQMVSDGVLP-DIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEP-DIYTYNIMI 508
Query: 292 SLYCNTSNL-DAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSS 350
C + D + + P +Y ++ + + F E +
Sbjct: 509 EGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPL 568
Query: 351 YDMRLADVIIRAYLQK-DMYEEAALI 375
D + +IRA+L+ D A LI
Sbjct: 569 PDSGTYNTLIRAHLRDGDKAASAELI 594
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 85/351 (24%), Positives = 144/351 (41%), Gaps = 20/351 (5%)
Query: 110 SYTDFAVYLDLTAKTNG----IAAAEKYFN-GLSEYAKNRYTYGALLNCYCKELMTERAL 164
S +F+ L AK N I+ E+ N G+S N YTY L+NC+C+ AL
Sbjct: 80 SIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISH---NLYTYSILINCFCRRSQLSLAL 136
Query: 165 ALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQS- 223
A+ KM +L + + V N+L + + LV QM + D+ T+ +
Sbjct: 137 AVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGL 196
Query: 224 YSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRD 283
+ H + V V + C+ TY + + K + A LKK+E+ K
Sbjct: 197 FRHNRASEAVALVDRMVVKGCQPD--LVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEP 254
Query: 284 RKA-YHFLISLYCNTSNL-DAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCF 341
Y+ +I CN N+ DA+N + P +Y L++ L +
Sbjct: 255 GVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLL 314
Query: 342 EEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYL 401
+ R + ++ +I A++++ EA +++ KR+ F S S + +
Sbjct: 315 SDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYS--SLINGFC 372
Query: 402 RSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVD-GAEEF 451
+LD A + E +S+ P VT +T + F + K VD G E F
Sbjct: 373 MHDRLDEAKHMFELMISK----DCFPNVVTYNTLIKGFCKAKRVDEGMELF 419
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 20/183 (10%)
Query: 45 KLYKRLSALGATGGSVTGAL------------NAYI----MEGKTVRKDMLEYCV--RSL 86
+L++ +S G G +VT NA I M V D++ Y + L
Sbjct: 417 ELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGL 476
Query: 87 RKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLS--EYAKNR 144
G+ AL V E+++ KM + + ++ K + F LS N
Sbjct: 477 CNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNV 536
Query: 145 YTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQ 204
TY +++ +C++ + E A ALF +M E L ++ +N L +LR G L+ +
Sbjct: 537 VTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIRE 596
Query: 205 MKQ 207
M+
Sbjct: 597 MRS 599
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 67/297 (22%), Positives = 123/297 (41%), Gaps = 13/297 (4%)
Query: 88 KFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNG--LSEYAKNRY 145
K G+ A+E++ ME RK+ +++ +D K + A FN + + +
Sbjct: 224 KSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADII 283
Query: 146 TYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQM 205
Y L+ +C + L M + K + VAF+ L +++ G+ + L +M
Sbjct: 284 IYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEM 343
Query: 206 KQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNE-CEDKCRWTTYSNLASIYVKAE 264
QR IS D +TY + + N +D + M ++ C R T++ L + Y KA
Sbjct: 344 IQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIR--TFNILINGYCKAN 401
Query: 265 LFEKAELALKKLEEMKPR----DRKAYHFLISLYCNTSNLDAVNRVWG-ILKSTFPPTNT 319
L + L+ +M R D Y+ LI +C L+ ++ ++ P
Sbjct: 402 LIDDG---LELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIV 458
Query: 320 SYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIF 376
SY +LL L + + FE+ E D+ + ++II ++A +F
Sbjct: 459 SYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLF 515
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 121/303 (39%), Gaps = 17/303 (5%)
Query: 90 GRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGL--------SEYA 141
GR ALE+++ M +M T + L A NG+ K + + + +
Sbjct: 156 GRVSEALELVDRMV--EMGHKPT----LITLNALVNGLCLNGKVSDAVLLIDRMVETGFQ 209
Query: 142 KNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPL 201
N TYG +L CK T A+ L KM+E K + V ++ + + G + L
Sbjct: 210 PNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNL 269
Query: 202 VNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYV 261
N+M+ + D + Y ++ + + D ++ +M + +S L +V
Sbjct: 270 FNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKR-KITPDVVAFSALIDCFV 328
Query: 262 K-AELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKS-TFPPTNT 319
K +L E EL + ++ D Y LI +C + LD N + ++ S P
Sbjct: 329 KEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIR 388
Query: 320 SYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNA 379
++ +L+ K N ID + F + R D + +I+ + + E A +F
Sbjct: 389 TFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEM 448
Query: 380 KKR 382
R
Sbjct: 449 VSR 451
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 121/297 (40%), Gaps = 49/297 (16%)
Query: 88 KFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYA--KNRY 145
K G+ R A E+ + M R + + +D K N + A + + N
Sbjct: 329 KEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIR 388
Query: 146 TYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQM 205
T+ L+N YCK + + L LF KM + +TV +N L + LG+ E + L +M
Sbjct: 389 TFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEM 448
Query: 206 KQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKA-E 264
R + D ++Y + + DG +C+ E + KA E
Sbjct: 449 VSRRVRPDIVSYKILL---------DG-------LCDNGEPE--------------KALE 478
Query: 265 LFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGI-----LKSTFPPTNT 319
+FEK E + +L D Y+ +I CN S +D W + LK P T
Sbjct: 479 IFEKIEKSKMEL------DIGIYNIIIHGMCNASKVDD---AWDLFCSLPLKGVKPDVKT 529
Query: 320 SYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYL-QKDMYEEAALI 375
Y +++ L K ++ F + E S + +++IRA+L + D + A LI
Sbjct: 530 -YNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLI 585
Score = 41.2 bits (95), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 66/165 (40%), Gaps = 6/165 (3%)
Query: 69 MEGKTVRKDMLEYCV--RSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNG 126
M + VR D++ Y + L G ALE+ E +E KM + + + +
Sbjct: 448 MVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASK 507
Query: 127 IAAAEKYFNGLS--EYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNN 184
+ A F L + TY ++ CK+ A LF KM+E N +N
Sbjct: 508 VDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNI 567
Query: 185 LSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTY--IVWMQSYSHL 227
L +L G K L+ ++K+ S+D T +V M S L
Sbjct: 568 LIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVDMLSDGRL 612
Score = 35.4 bits (80), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 71/347 (20%), Positives = 129/347 (37%), Gaps = 53/347 (15%)
Query: 137 LSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPE 196
L A N YT ++NC C+ A + K+ +L + +TV F+ L G+
Sbjct: 100 LKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVS 159
Query: 197 KVRPLVNQM-----KQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWT 251
+ LV++M K I+L+ L + + D V + + E +
Sbjct: 160 EALELVDRMVEMGHKPTLITLNALVNGLCLNGKVS----DAV--LLIDRMVETGFQPNEV 213
Query: 252 TYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILK 311
TY + + K+ A L+K+EE K + LDAV
Sbjct: 214 TYGPVLKVMCKSGQTALAMELLRKMEERKIK-----------------LDAVK------- 249
Query: 312 STFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEE 371
Y +++ L K ++D F E E + D+ + +IR + +++
Sbjct: 250 ---------YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDD 300
Query: 372 AA-LIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQV 430
A L+ + K++ F + + +++ + L E E E Q P V
Sbjct: 301 GAKLLRDMIKRKITPDVVAF---SALIDCFVKEGK----LREAEELHKEMIQRGISPDTV 353
Query: 431 TVDTFFRFFEEEKDVDGAEEFCKVLKSLNC-LDFSAYSLLIKTYIAA 476
T + F +E +D A ++ S C + +++LI Y A
Sbjct: 354 TYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKA 400
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 123/297 (41%), Gaps = 13/297 (4%)
Query: 88 KFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGL--SEYAKNRY 145
K G+ A+E++ ME R + +++ +D K + A FN + N
Sbjct: 240 KSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNII 299
Query: 146 TYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQM 205
TY L+ +C + L M + K N V F+ L +++ G+ + L +M
Sbjct: 300 TYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEM 359
Query: 206 KQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNE-CEDKCRWTTYSNLASIYVKAE 264
R I+ D +TY + + N +D ++ M ++ C+ R T++ L + Y KA
Sbjct: 360 IHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIR--TFNILINGYCKAN 417
Query: 265 LFEKAELALKKLEEMKPR----DRKAYHFLISLYCNTSNLDAVNRVWG-ILKSTFPPTNT 319
+ + L+ +M R D Y+ LI +C L+ ++ ++ PP
Sbjct: 418 ---RIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIV 474
Query: 320 SYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIF 376
+Y +LL L + + FE+ E D+ + ++II ++A +F
Sbjct: 475 TYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLF 531
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 135/318 (42%), Gaps = 16/318 (5%)
Query: 58 GSVTGALNAYI-MEGKTVRKDMLEY--CVRSLRKFGRYRHALEVIEWMESRKMHFSYTDF 114
GS+ A N + ME K + +++ Y + GR+ +++ M RK++ + F
Sbjct: 277 GSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTF 336
Query: 115 AVYLDLTAKTNGIAAAEKYFNGLSE--YAKNRYTYGALLNCYCKELMTERALALFEKMDE 172
+V +D K + AE+ + A + TY +L++ +CKE ++A + + M
Sbjct: 337 SVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVS 396
Query: 173 LKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDG 232
N FN L Y + + + L +M R + D +TY +Q + L ++
Sbjct: 397 KGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNV 456
Query: 233 VERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPR-DRKAYHFLI 291
+ +F EM + + TY L EKA +K+E+ K D Y+ +I
Sbjct: 457 AKELFQEMVSR-KVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIII 515
Query: 292 SLYCNTSNLDAVNRVWGI-----LKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWES 346
CN S +D W + LK P T Y +++ L K + + F + E
Sbjct: 516 HGMCNASKVD---DAWDLFCSLPLKGVKPGVKT-YNIMIGGLCKKGPLSEAELLFRKMEE 571
Query: 347 RCSSYDMRLADVIIRAYL 364
+ D +++IRA+L
Sbjct: 572 DGHAPDGWTYNILIRAHL 589
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 116/280 (41%), Gaps = 5/280 (1%)
Query: 90 GRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYA--KNRYTY 147
GR ALE+++ M ++ + A A + + EY N TY
Sbjct: 172 GRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTY 231
Query: 148 GALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQ 207
G +LN CK T A+ L KM+E + V ++ + + G + L N+M+
Sbjct: 232 GPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEM 291
Query: 208 RNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVK-AELF 266
+ I+ + +TY + + + + D ++ +M + T+S L +VK +L
Sbjct: 292 KGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKR-KINPNVVTFSVLIDSFVKEGKLR 350
Query: 267 EKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKS-TFPPTNTSYLVLL 325
E EL + + D Y LI +C ++LD N++ ++ S P ++ +L+
Sbjct: 351 EAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILI 410
Query: 326 QALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQ 365
K N ID + F + R D + +I+ + +
Sbjct: 411 NGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 450
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 68/345 (19%), Positives = 134/345 (38%), Gaps = 14/345 (4%)
Query: 140 YAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVR 199
+ + T L+N C A+ L +KM E N V + + + + GQ
Sbjct: 189 HKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAM 248
Query: 200 PLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWT---TYSNL 256
L+ +M++RNI LD + Y + + +D +F EM E K T TY+ L
Sbjct: 249 ELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEM----EMKGITTNIITYNIL 304
Query: 257 ASIYVKAELFEKAELALKKLEEMKPR-DRKAYHFLISLYCNTSNLDAVNRVWG-ILKSTF 314
+ A ++ L+ + + K + + LI + L + ++
Sbjct: 305 IGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGI 364
Query: 315 PPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAAL 374
P +Y L+ K N +D Q + S+ ++R +++I Y + + ++
Sbjct: 365 APDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLE 424
Query: 375 IFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDT 434
+F R + + + + + +L++A + +S + ++ +D
Sbjct: 425 LFRKMSLRGVVADTV--TYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDG 482
Query: 435 FFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKL 479
E EK + E F K+ KS LD Y+++I A K+
Sbjct: 483 LCDNGESEKAL---EIFEKIEKSKMELDIGIYNIIIHGMCNASKV 524
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 68/353 (19%), Positives = 138/353 (39%), Gaps = 59/353 (16%)
Query: 137 LSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPE 196
L A N YT ++NC+C+ A + K+ +L + NT+ F+ L G+
Sbjct: 116 LKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVS 175
Query: 197 KVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNL 256
+ LV++M + D +T + L+ + + + E + TY +
Sbjct: 176 EALELVDRMVEMGHKPDLITINTLVNGLC-LSGKEAEAMLLIDKMVEYGCQPNAVTYGPV 234
Query: 257 ASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP 316
++ K+ + LA++ L +M+ R+ K LDAV
Sbjct: 235 LNVMCKS---GQTALAMELLRKMEERNIK--------------LDAV------------- 264
Query: 317 TNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAA-LI 375
Y +++ L K ++D F E E + + ++ +++I + +++ A L+
Sbjct: 265 ---KYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLL 321
Query: 376 FNNAKKRANASARFFKSR-ESFMIYYLRSRQLDLALNEMEAALSEAKQFHWR-------P 427
+ K++ N + F +SF+ E L EA++ H P
Sbjct: 322 RDMIKRKINPNVVTFSVLIDSFV---------------KEGKLREAEELHKEMIHRGIAP 366
Query: 428 MQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNC-LDFSAYSLLIKTYIAAGKL 479
+T + F +E +D A + ++ S C + +++LI Y A ++
Sbjct: 367 DTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRI 419
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 2/126 (1%)
Query: 90 GRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLS--EYAKNRYTY 147
G ALE+ E +E KM + + + + + A F L TY
Sbjct: 487 GESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTY 546
Query: 148 GALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQ 207
++ CK+ A LF KM+E + +N L +L G K L+ ++K+
Sbjct: 547 NIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKR 606
Query: 208 RNISLD 213
S+D
Sbjct: 607 CGFSVD 612
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/325 (20%), Positives = 133/325 (40%), Gaps = 51/325 (15%)
Query: 63 ALNAYI-MEGKTVRKDMLEYC--VRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLD 119
ALN + ME K VR +++ Y + L + R+ A ++ M RK++ + F +D
Sbjct: 279 ALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALID 338
Query: 120 LTAKTNGIAAAEKYFNGLSEYA--KNRYTYGALLNCYCKELMTERALALFEKMDELKFLG 177
K + AEK ++ + + + + +TY +L+N +C + A +FE M
Sbjct: 339 AFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP 398
Query: 178 NTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVF 237
N V +N L + + + ++ L +M QR + + +TY + + D D + VF
Sbjct: 399 NVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVF 458
Query: 238 YEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNT 297
+M ++ TY+ L K EKA + + L+
Sbjct: 459 KQMVSDGVHP-NIMTYNTLLDGLCKNGKLEKAMVVFEYLQ-------------------- 497
Query: 298 SNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCS------SY 351
+S PT +Y ++++ + K ++ + W+ CS
Sbjct: 498 -------------RSKMEPTIYTYNIMIEGMCKAGKVE------DGWDLFCSLSLKGVKP 538
Query: 352 DMRLADVIIRAYLQKDMYEEAALIF 376
D+ + + +I + +K + EEA +F
Sbjct: 539 DVIIYNTMISGFCRKGLKEEADALF 563
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 99/245 (40%), Gaps = 15/245 (6%)
Query: 140 YAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVR 199
Y + T +LLN YC A+AL ++M E+ + +T+ F L + +
Sbjct: 151 YEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAV 210
Query: 200 PLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECED---KCRWTTYSNL 256
LV++M QR + +TY V + DID + + + N+ E + YS +
Sbjct: 211 ALVDRMVQRGCQPNLVTYGVVVNGLCKRGDID----LAFNLLNKMEAAKIEANVVIYSTV 266
Query: 257 ASIYVKAELFEKAELALKKLEEMKPRDRK----AYHFLISLYCNTSNLDAVNRVWG-ILK 311
K + + AL EM+ + + Y LIS CN +R+ +++
Sbjct: 267 IDSLCK---YRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIE 323
Query: 312 STFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEE 371
P ++ L+ A K + ++ ++E R D+ +I + D +E
Sbjct: 324 RKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 383
Query: 372 AALIF 376
A +F
Sbjct: 384 AKHMF 388
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/315 (22%), Positives = 125/315 (39%), Gaps = 12/315 (3%)
Query: 141 AKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRP 200
+ N YTY L+NC+C+ ALAL KM +L + + V ++L Y +
Sbjct: 117 SHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVA 176
Query: 201 LVNQMKQRNISLDNLTYIVWMQS-YSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASI 259
LV+QM + D +T+ + + H + V V + C+ TY + +
Sbjct: 177 LVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPN--LVTYGVVVNG 234
Query: 260 YVKAELFEKAELALKKLEEMKPR-DRKAYHFLISLYCNTSNL-DAVNRVWGILKSTFPPT 317
K + A L K+E K + Y +I C + DA+N + P
Sbjct: 235 LCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPN 294
Query: 318 NTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFN 377
+Y L+ L + + R + ++ + +I A++++ EA +++
Sbjct: 295 VITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYD 354
Query: 378 NAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFR 437
KR+ F S S + + +LD A + E +S+ P VT +T
Sbjct: 355 EMIKRSIDPDIFTYS--SLINGFCMHDRLDEAKHMFELMISK----DCFPNVVTYNTLIN 408
Query: 438 FFEEEKDVD-GAEEF 451
F + K +D G E F
Sbjct: 409 GFCKAKRIDEGVELF 423
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 90/189 (47%), Gaps = 5/189 (2%)
Query: 60 VTGALNAYI-MEGKTVRKDMLEYC--VRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAV 116
V ALN + ME K +R +++ Y + L +GR+ A +++ M +K++ + F
Sbjct: 276 VDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNA 335
Query: 117 YLDLTAKTNGIAAAEKYFNGLSEYA--KNRYTYGALLNCYCKELMTERALALFEKMDELK 174
+D K AEK ++ + + + + +TY +L+N +C ++A +FE M
Sbjct: 336 LIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKD 395
Query: 175 FLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVE 234
+ V +N L + + + E L +M R + D +TY +Q H D D +
Sbjct: 396 CFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQ 455
Query: 235 RVFYEMCNE 243
+VF +M ++
Sbjct: 456 KVFKQMVSD 464
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 76/343 (22%), Positives = 137/343 (39%), Gaps = 12/343 (3%)
Query: 139 EYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKV 198
E YTY L+NC+C+ ALAL KM +L + + V ++L Y +
Sbjct: 115 EIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDA 174
Query: 199 RPLVNQMKQRNISLDNLTYIVWMQS-YSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLA 257
LV+QM + D +T+ + + H + V V + C+ TY +
Sbjct: 175 VALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPN--LVTYGVVV 232
Query: 258 SIYVKAELFEKAELALKKLEEMKPR-DRKAYHFLISLYCNTSNL-DAVNRVWGILKSTFP 315
+ K + A L K+E K D ++ +I C ++ DA+N +
Sbjct: 233 NGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIR 292
Query: 316 PTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALI 375
P +Y L+ L Q + + + ++ + +I A++++ + EA +
Sbjct: 293 PNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKL 352
Query: 376 FNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTF 435
+++ KR+ F + S + + +LD A E +S+ P VT +T
Sbjct: 353 YDDMIKRSIDPDIF--TYNSLVNGFCMHDRLDKAKQMFEFMVSK----DCFPDVVTYNTL 406
Query: 436 FRFFEEEKDV-DGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAG 477
+ F + K V DG E F ++ D Y+ LI+ G
Sbjct: 407 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDG 449
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 16/149 (10%)
Query: 69 MEGKTVRKDMLEYCV--RSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNG 126
M V D++ Y + L G+ ALEV ++M+ ++ D +Y T G
Sbjct: 461 MVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL---DIYIY---TTMIEG 514
Query: 127 IAAAEKYFNG--------LSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGN 178
+ A K +G L N TY +++ C + + + A AL +KM E L N
Sbjct: 515 MCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPN 574
Query: 179 TVAFNNLSTMYLRLGQPEKVRPLVNQMKQ 207
+ +N L +LR G L+ +M+
Sbjct: 575 SGTYNTLIRAHLRDGDKAASAELIREMRS 603
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 81/353 (22%), Positives = 135/353 (38%), Gaps = 16/353 (4%)
Query: 138 SEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEK 197
S N YT ++N CK+ E+ ++ E + V +N L + Y G E+
Sbjct: 229 SGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEE 288
Query: 198 VRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLA 257
L+N M + S TY + + + VF EM T S L
Sbjct: 289 AFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLM 348
Query: 258 SIYVKAELFEKAELALKKLEEMKPRDRKA----YHFLISLYCNTSNLD-AVNRVWGILKS 312
K ++ E K +M+ RD + ++SL+ + NLD A+ + ++
Sbjct: 349 EACKKGDVVETE----KVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEA 404
Query: 313 TFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEA 372
P N Y +L+Q + I + E + + D+ + I+ ++ M EA
Sbjct: 405 GLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEA 464
Query: 373 ALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTV 432
+FN +RA F + I +L N ME + K+ R VT
Sbjct: 465 DKLFNEMTERA-----LFPDSYTLTILIDGHCKLGNLQNAME-LFQKMKEKRIRLDVVTY 518
Query: 433 DTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFS-AYSLLIKTYIAAGKLASDMR 484
+T F + D+D A+E + S L +YS+L+ + G LA R
Sbjct: 519 NTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFR 571
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 109/253 (43%), Gaps = 17/253 (6%)
Query: 141 AKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRP 200
A + TY +L+ CK M A LF +M E ++ L + +LG +
Sbjct: 442 AMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAME 501
Query: 201 LVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLA-SI 259
L +MK++ I LD +TY + + + DID + ++ +M ++ E +YS L ++
Sbjct: 502 LFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSK-EILPTPISYSILVNAL 560
Query: 260 YVKAELFEKAELALKKLEEMKPRDRKAY----HFLISLYCNTSNL-DAVNRVWGILKSTF 314
K L E A + +EM ++ K + +I YC + N D + + ++ F
Sbjct: 561 CSKGHLAE----AFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGF 616
Query: 315 PPTNTSYLVLLQALAK----LNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYE 370
P SY L+ + A ++K+ EE D+ + I+ + +++ +
Sbjct: 617 VPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVP--DVFTYNSILHGFCRQNQMK 674
Query: 371 EAALIFNNAKKRA 383
EA ++ +R
Sbjct: 675 EAEVVLRKMIERG 687
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/267 (20%), Positives = 113/267 (42%), Gaps = 15/267 (5%)
Query: 127 IAAAEKYFNGLSEYA--KNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNN 184
+ A+K FN ++E A + YT L++ +CK + A+ LF+KM E + + V +N
Sbjct: 461 LGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNT 520
Query: 185 LSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNEC 244
L + ++G + + + M + I ++Y + + + + RV+ EM ++
Sbjct: 521 LLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISK- 579
Query: 245 EDKCRWTTYSNLASIYVKAELFEKAELALKKL--EEMKPRDRKAYHFLISLYCNTSNLDA 302
K +++ Y ++ E L+K+ E P D +Y+ LI + N+
Sbjct: 580 NIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVP-DCISYNTLIYGFVREENM-- 636
Query: 303 VNRVWGILK------STFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLA 356
++ +G++K P +Y +L + N + + + R + D
Sbjct: 637 -SKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTY 695
Query: 357 DVIIRAYLQKDMYEEAALIFNNAKKRA 383
+I ++ +D EA I + +R
Sbjct: 696 TCMINGFVSQDNLTEAFRIHDEMLQRG 722
Score = 40.4 bits (93), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 45/240 (18%), Positives = 99/240 (41%), Gaps = 13/240 (5%)
Query: 88 KFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGL--SEYAKNRY 145
K G ++A+E+ + M+ +++ + LD K I A++ + + E
Sbjct: 492 KLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPI 551
Query: 146 TYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQM 205
+Y L+N C + A ++++M + N++ Y R G + +M
Sbjct: 552 SYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKM 611
Query: 206 KQRNISLDNLTYIVWMQSYSHLNDIDG----VERVFYEMCNECEDKCRWTTYSNLASIYV 261
D ++Y + + ++ V+++ E D TY+++ +
Sbjct: 612 ISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPD---VFTYNSILHGFC 668
Query: 262 KAELFEKAELALKKLEE--MKPRDRKAYHFLISLYCNTSNLDAVNRVWG-ILKSTFPPTN 318
+ ++AE+ L+K+ E + P DR Y +I+ + + NL R+ +L+ F P +
Sbjct: 669 RQNQMKEAEVVLRKMIERGVNP-DRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPDD 727
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 94/435 (21%), Positives = 170/435 (39%), Gaps = 52/435 (11%)
Query: 69 MEGKTVRKDMLEY--CVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNG 126
M + + D++ Y V L K G AL ++ ME+ ++ + F +D K
Sbjct: 214 MVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRH 273
Query: 127 IAAAEKYFNGLSEYA--KNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNN 184
+ A F + N TY +L+NC C A L M E K N V FN
Sbjct: 274 VEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNA 333
Query: 185 LSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVF-YEMCNE 243
L + + G+ + L +M QR+I D +TY + + + N +D +++F + + +
Sbjct: 334 LIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKD 393
Query: 244 CEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPR----DRKAYHFLISLYCNTSN 299
C + TY+ L + + K ++ E ++ EM R + Y +I + +
Sbjct: 394 CLPNIQ--TYNTLINGFCKC---KRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGD 448
Query: 300 LDAVNRVWGILKSTFPPTNT-SYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADV 358
D+ V+ + S PT+ +Y +LL L +D +
Sbjct: 449 CDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLD--------------------TAL 488
Query: 359 IIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESF--------------MIYYLRSR 404
+I YLQK E I+N + + + ++ + F MI L S+
Sbjct: 489 VIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLSIKPDVVTYNTMISGLCSK 548
Query: 405 QLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFS 464
+L L E + + K+ P T +T R + D + E K ++S + +
Sbjct: 549 RL---LQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFVGDA 605
Query: 465 AYSLLIKTYIAAGKL 479
+ L+ + G+L
Sbjct: 606 STISLVTNMLHDGRL 620
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 75/403 (18%), Positives = 160/403 (39%), Gaps = 18/403 (4%)
Query: 85 SLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE--YAK 142
++ K ++ + + E M++ + ++++++ + + ++ A + + Y
Sbjct: 92 AVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEP 151
Query: 143 NRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLV 202
+ T +LLN YC A+AL ++M E+ + +T F L + + LV
Sbjct: 152 DIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALV 211
Query: 203 NQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVK 262
+QM QR D +TY + DID + +M K ++ + K
Sbjct: 212 DQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKM-EAARIKANVVIFNTIIDSLCK 270
Query: 263 AELFEKAELALKKLEEMKPRDRK----AYHFLISLYCNTSNL-DAVNRVWGILKSTFPPT 317
+ E+A+ EM+ + + Y+ LI+ CN DA + +L+ P
Sbjct: 271 ---YRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPN 327
Query: 318 NTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFN 377
++ L+ A K + ++ EE R D +++I + + +EA +F
Sbjct: 328 VVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFK 387
Query: 378 NAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFR 437
+ ++ + + + + ++++ + E Q VT T +
Sbjct: 388 FMVSKDCLPN--IQTYNTLINGFCKCKRVEDGVE----LFREMSQRGLVGNTVTYTTIIQ 441
Query: 438 FFEEEKDVDGAE-EFCKVLKSLNCLDFSAYSLLIKTYIAAGKL 479
F + D D A+ F +++ + D YS+L+ + GKL
Sbjct: 442 GFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKL 484
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 68/346 (19%), Positives = 134/346 (38%), Gaps = 33/346 (9%)
Query: 160 TERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIV 219
+ A+ LF M + + + V FN L + ++ + E V L QM+ IS D TY +
Sbjct: 64 VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSI 123
Query: 220 WMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEM 279
++ + + + V +M + T S+L + Y ++ A + ++ EM
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEP-DIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182
Query: 280 --KPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDIL 337
KP + L+ + +AV V +++ P +Y ++ L K ID+
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242
Query: 338 KQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRA-NASARFFKSRESF 396
+ E+ ++ + + II + + E A +F + + + + S +
Sbjct: 243 LNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINC 302
Query: 397 MIYYLR--------SRQLDLALNE-------------MEAALSEAKQFHWRPMQVTVDT- 434
+ Y R S L+ +N E L EA++ H +Q ++D
Sbjct: 303 LCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPD 362
Query: 435 ------FFRFFEEEKDVDGAEEFCKVLKSLNCL-DFSAYSLLIKTY 473
F +D A++ K + S +CL + Y+ LI +
Sbjct: 363 TITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGF 408
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 106/240 (44%), Gaps = 9/240 (3%)
Query: 63 ALNAYI-MEGKTVRKDMLEYC--VRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLD 119
ALN + ME K VR +++ Y + L +GR+ A ++ M RK++ + F+ +D
Sbjct: 272 ALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALID 331
Query: 120 LTAKTNGIAAAEKYFNGLSEYA--KNRYTYGALLNCYCKELMTERALALFEKMDELKFLG 177
K + AEK + + + + N +TY +L+N +C A + E M L
Sbjct: 332 AFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLP 391
Query: 178 NTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVF 237
N V +N L + + + +K L +M QR + + +TY + + D D + VF
Sbjct: 392 NVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVF 451
Query: 238 YEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEE--MKPRDRKAYHFLISLYC 295
+M + TY+ L K KA + + L+ M+P D Y+ +I C
Sbjct: 452 KQMVSVGVHP-NILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEP-DIYTYNIMIEGMC 509
Score = 40.4 bits (93), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 85/435 (19%), Positives = 159/435 (36%), Gaps = 59/435 (13%)
Query: 95 ALEVIEWMESRKMHFSYTDFAVYLDLTAKTNG----IAAAEKY-FNGLSEYAKNRYTYGA 149
A+ + M + S +F+ L AK N I+ EK G+S N YTY
Sbjct: 62 AIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISH---NLYTYNI 118
Query: 150 LLNCYCK---------------------ELMT--------------ERALALFEKMDELK 174
L+NC+C+ +++T A+AL ++M E+
Sbjct: 119 LINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMG 178
Query: 175 FLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVE 234
+ +TV F L + + L+++M QR D +TY + D D
Sbjct: 179 YKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLAL 238
Query: 235 RVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRK----AYHFL 290
+ +M + + YS + K + + AL EM+ + + Y L
Sbjct: 239 NLLNKM-EAAKIEANVVIYSTVIDSLCK---YRHEDDALNLFTEMENKGVRPNVITYSSL 294
Query: 291 ISLYCNTSNLDAVNRVWG-ILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCS 349
IS CN +R+ +++ P ++ L+ A K + ++ +EE R
Sbjct: 295 ISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSI 354
Query: 350 SYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLA 409
++ +I + D EA + ++ + + + + +++++D
Sbjct: 355 DPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPN--VVTYNTLINGFCKAKRVDKG 412
Query: 410 LNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNC-LDFSAYSL 468
+ E Q VT T F + +D D A+ K + S+ + Y++
Sbjct: 413 ME----LFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNI 468
Query: 469 LIKTYIAAGKLASDM 483
L+ GKLA M
Sbjct: 469 LLDGLCKNGKLAKAM 483
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 118/255 (46%), Gaps = 14/255 (5%)
Query: 88 KFGR-YRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE--YAKNR 144
K GR +R L V++ M S+ + F + L A+ + A+++F L Y
Sbjct: 257 KMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGT 316
Query: 145 YTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQ 204
TY ALL + K + AL++ ++M+E ++V +N L Y+R G ++ ++
Sbjct: 317 VTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEM 376
Query: 205 MKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAE 264
M ++ + + +TY + +Y D ++FY M E TY+ + S+ K
Sbjct: 377 MTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSM-KEAGCVPNTCTYNAVLSLLGKK- 434
Query: 265 LFEKAELALKKLEEMKPR----DRKAYHFLISLYCNTSNLDA-VNRVWGILKS-TFPPTN 318
++ +K L +MK +R ++ +++L C +D VNRV+ +KS F P
Sbjct: 435 --SRSNEMIKMLCDMKSNGCSPNRATWNTMLAL-CGNKGMDKFVNRVFREMKSCGFEPDR 491
Query: 319 TSYLVLLQALAKLNA 333
++ L+ A + +
Sbjct: 492 DTFNTLISAYGRCGS 506
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 128/285 (44%), Gaps = 12/285 (4%)
Query: 74 VRKDMLEYCVRSLRKFGRYRHALEVIEWM----ESRKMHFSYTDFAVYLDLTAKTNGIAA 129
+R D++ V+ L G + A+ + EW+ S + + +++ + + + +
Sbjct: 135 LRTDLVSL-VKGLDDSGHWERAVFLFEWLVLSSNSGALKLDHQVIEIFVRILGRESQYSV 193
Query: 130 AEKYFN--GLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLST 187
A K + L EY + Y +L+ Y + E+A+ LFE+M E+ V +N +
Sbjct: 194 AAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILD 253
Query: 188 MYLRLGQP-EKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECED 246
++ ++G+ K+ ++++M+ + + D T + + + + + F E+ C
Sbjct: 254 VFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAEL-KSCGY 312
Query: 247 KCRWTTYSNLASIYVKAELFEKAELALKKLEEMK-PRDRKAYHFLISLYCNTS-NLDAVN 304
+ TY+ L ++ KA ++ +A LK++EE P D Y+ L++ Y + +A
Sbjct: 313 EPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAG 372
Query: 305 RVWGILKSTFPPTNTSYLVLLQALAKLNAID-ILKQCFEEWESRC 348
+ + K P +Y ++ A K D LK + E+ C
Sbjct: 373 VIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGC 417
Score = 42.0 bits (97), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/201 (18%), Positives = 87/201 (43%), Gaps = 13/201 (6%)
Query: 123 KTNGIAAAEKYFNGLSE--YAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTV 180
K +A +E+ F + Y + + ++L+ + + M ++A + E + E + V
Sbjct: 608 KCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLV 667
Query: 181 AFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEM 240
+N+L MY+R G+ K ++ +++ + D ++Y ++ + + R+ EM
Sbjct: 668 TYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEM 727
Query: 241 CNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRK-AYHFLISLYCNTSN 299
C + TY+ S Y +F + E ++ + + R + + ++ YC
Sbjct: 728 TERGIRPCIF-TYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTFKMVVDGYCRAGK 786
Query: 300 ----LDAVNRVWGILKSTFPP 316
+D V+++ TF P
Sbjct: 787 YSEAMDFVSKI-----KTFDP 802
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 109/246 (44%), Gaps = 9/246 (3%)
Query: 63 ALNAYI-MEGKTVRKDMLEYC--VRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLD 119
ALN + M+ K +R D+ Y + L +GR+ A ++ M RK++ + F+ +D
Sbjct: 277 ALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALID 336
Query: 120 LTAKTNGIAAAEKYFNGLSEYA--KNRYTYGALLNCYCKELMTERALALFEKMDELKFLG 177
K + AEK ++ + + + + +TY +L+N +C + A +FE M
Sbjct: 337 AFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP 396
Query: 178 NTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVF 237
N V ++ L + + + E+ L +M QR + + +TY + + D D + VF
Sbjct: 397 NVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVF 456
Query: 238 YEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEE--MKPRDRKAYHFLISLYC 295
+M + TY+ L K KA + + L+ M+P D Y+ +I C
Sbjct: 457 KQMVSVGVHP-NILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEP-DIYTYNIMIEGMC 514
Query: 296 NTSNLD 301
++
Sbjct: 515 KAGKVE 520
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 79/412 (19%), Positives = 161/412 (39%), Gaps = 28/412 (6%)
Query: 85 SLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE--YAK 142
++ K ++ + + E M++ + ++++++ + + ++ A + + Y
Sbjct: 92 AVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEP 151
Query: 143 NRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLV 202
+ T +LLN YC A+AL ++M E+ + +T F L + + LV
Sbjct: 152 DIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALV 211
Query: 203 NQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVK 262
+QM QR D +TY + DID + +M + + + Y+ + K
Sbjct: 212 DQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKM-EKGKIEADVVIYNTIIDGLCK 270
Query: 263 AELFEKAELALKKLEEMKPR----DRKAYHFLISLYCNTSNLDAVNRVWG-ILKSTFPPT 317
++ + AL EM + D Y LIS CN +R+ +++ P
Sbjct: 271 ---YKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPN 327
Query: 318 NTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFN 377
++ L+ A K + ++ ++E R D+ +I + D +EA +F
Sbjct: 328 VVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMF- 386
Query: 378 NAKKRANASARFFKSRESF--MIYYLRSRQLDLALNEMEAALSEAKQFHWRPM---QVTV 432
S++ F ++ Y + +E + ++ R + VT
Sbjct: 387 ----------ELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTY 436
Query: 433 DTFFRFFEEEKDVDGAEEFCKVLKSLNC-LDFSAYSLLIKTYIAAGKLASDM 483
T F + +D D A+ K + S+ + Y++L+ GKLA M
Sbjct: 437 TTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAM 488
Score = 41.2 bits (95), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 4/147 (2%)
Query: 74 VRKDMLEYCV--RSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAE 131
V ++L Y + L K G+ A+ V E+++ M + + ++ K +
Sbjct: 464 VHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGW 523
Query: 132 KYFNGLS--EYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMY 189
+ F LS + N Y +++ +C++ E A +L +KM E L N+ +N L
Sbjct: 524 ELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRAR 583
Query: 190 LRLGQPEKVRPLVNQMKQRNISLDNLT 216
LR G E L+ +M+ + D T
Sbjct: 584 LRDGDREASAELIKEMRSCGFAGDAST 610
Score = 38.9 bits (89), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 2/126 (1%)
Query: 94 HALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGL--SEYAKNRYTYGALL 151
+A V + M S +H + + + LD K +A A F L S + YTY ++
Sbjct: 451 NAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMI 510
Query: 152 NCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNIS 211
CK E LF + N +A+N + + + R G E+ L+ +MK+
Sbjct: 511 EGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPL 570
Query: 212 LDNLTY 217
++ TY
Sbjct: 571 PNSGTY 576
Score = 37.0 bits (84), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 69/356 (19%), Positives = 137/356 (38%), Gaps = 33/356 (9%)
Query: 160 TERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIV 219
+ A+ LF M + + + V FN L + ++ + E V L QM+ IS D TY +
Sbjct: 64 VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSI 123
Query: 220 WMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEM 279
++ + + + V +M + T S+L + Y ++ A + ++ EM
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEP-DIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182
Query: 280 --KPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDIL 337
KP + L+ + +AV V +++ P +Y ++ L K ID+
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242
Query: 338 KQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARF-FKSRESF 396
++ E D+ + + II + ++A +F + F + S S
Sbjct: 243 LSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISC 302
Query: 397 MIYYLRSRQLDLALNEM---------------------EAALSEAKQFHWRPMQVTVD-- 433
+ Y R L++M E L EA++ + ++ ++D
Sbjct: 303 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 362
Query: 434 -----TFFRFFEEEKDVDGAEEFCKVLKSLNCL-DFSAYSLLIKTYIAAGKLASDM 483
+ F +D A+ +++ S +C + YS LIK + A ++ M
Sbjct: 363 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGM 418
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 89/193 (46%), Gaps = 8/193 (4%)
Query: 143 NRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLV 202
N T G ++N YC+E E AL F +M EL N FN+L +L + + V +V
Sbjct: 530 NVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVV 589
Query: 203 NQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVK 262
+ M++ + D +T+ M ++S + D+ E ++ +M D +S LA Y +
Sbjct: 590 DLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDP-DIHAFSILAKGYAR 648
Query: 263 AELFEKAELALKKLEEMKPRDRKA-YHFLISLYCNTSNLDAVNRVW----GILKSTFPPT 317
A EKAE L ++ + R Y +IS +C+ + +V+ GI+ P
Sbjct: 649 AGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIV--GLSPN 706
Query: 318 NTSYLVLLQALAK 330
T+Y L+ +
Sbjct: 707 LTTYETLIWGFGE 719
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 80/190 (42%), Gaps = 2/190 (1%)
Query: 90 GRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYA--KNRYTY 147
G+ AL M+ +H + F + N + + + + E+ + T+
Sbjct: 545 GKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTF 604
Query: 148 GALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQ 207
L+N + +R ++ M E + AF+ L+ Y R G+PEK ++NQM++
Sbjct: 605 STLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRK 664
Query: 208 RNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFE 267
+ + + Y + + ++ +V+ +MC TTY L + +A+
Sbjct: 665 FGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPW 724
Query: 268 KAELALKKLE 277
KAE LK +E
Sbjct: 725 KAEELLKDME 734
Score = 36.6 bits (83), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 75/377 (19%), Positives = 144/377 (38%), Gaps = 56/377 (14%)
Query: 127 IAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLS 186
I+ EK NGL + + A++N + ++A+ +FEKM E FN L
Sbjct: 377 ISKVEK--NGLK---PDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLI 431
Query: 187 TMYLRLGQPEKVRPLV-----NQMKQRNISLDNLTYIVW---------------MQSYSH 226
Y ++G+ E+ L+ ++M Q N N+ W MQSY
Sbjct: 432 KGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGV 491
Query: 227 LNDI---DGVERVFYEMCNEC--ED-----------KCRWTTYSNLASIYVKAELFEKAE 270
D+ + + + + + + C ED K T + + Y + E+A
Sbjct: 492 KPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEAL 551
Query: 271 LALKKLEEMKPRDRK-AYHFLISLYCNTSNLDAVNRVWGILKS-TFPPTNTSYLVLLQAL 328
+++E+ ++ LI + N +++D V V +++ P ++ L+ A
Sbjct: 552 RFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAW 611
Query: 329 AKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASAR 388
+ + + ++ + + D+ ++ + Y + E+A I N +K
Sbjct: 612 SSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRK------- 664
Query: 389 FFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQF----HWRPMQVTVDTFFRFFEEEKD 444
F R + +IY + EM+ A+ K+ P T +T F E K
Sbjct: 665 -FGVRPNVVIYTQIISGW-CSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQ 722
Query: 445 VDGAEEFCKVLKSLNCL 461
AEE K ++ N +
Sbjct: 723 PWKAEELLKDMEGKNVV 739
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/299 (20%), Positives = 130/299 (43%), Gaps = 13/299 (4%)
Query: 86 LRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYA--KN 143
L K G AL++ ME R + S +++ +D K A FN + +
Sbjct: 220 LCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKAD 279
Query: 144 RYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVN 203
TY +L+ C + + + +M + + V F+ L ++++ G+ + + L N
Sbjct: 280 VVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYN 339
Query: 204 QMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNE-CEDKCRWTTYSNLASIYVK 262
+M R I+ D +TY + + N + ++F M ++ CE TYS L + Y K
Sbjct: 340 EMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPD--IVTYSILINSYCK 397
Query: 263 AELFEKAELALKKLEEMKPR----DRKAYHFLISLYCNTSNLDAVNRVWG-ILKSTFPPT 317
A+ + + ++ E+ + + Y+ L+ +C + L+A ++ ++ PP+
Sbjct: 398 AK---RVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPS 454
Query: 318 NTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIF 376
+Y +LL L ++ + FE+ + + + + ++II ++A +F
Sbjct: 455 VVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLF 513
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 111/264 (42%), Gaps = 9/264 (3%)
Query: 90 GRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYA--KNRYTY 147
GR A+ +++ M K + ++ ++ A + + EY + TY
Sbjct: 154 GRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTY 213
Query: 148 GALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQ 207
G +LN CK + AL LF KM+E + V ++ + + G + L N+M+
Sbjct: 214 GPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEM 273
Query: 208 RNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMC--NECEDKCRWTTYSNLASIYVK-AE 264
+ I D +TY + + D ++ EM N D T+S L ++VK +
Sbjct: 274 KGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPD---VVTFSALIDVFVKEGK 330
Query: 265 LFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKS-TFPPTNTSYLV 323
L E EL + + D Y+ LI +C + L N+++ ++ S P +Y +
Sbjct: 331 LLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSI 390
Query: 324 LLQALAKLNAIDILKQCFEEWESR 347
L+ + K +D + F E S+
Sbjct: 391 LINSYCKAKRVDDGMRLFREISSK 414
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/304 (20%), Positives = 117/304 (38%), Gaps = 46/304 (15%)
Query: 69 MEGKTVRKDMLEYC--VRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNG 126
M G+ + D++ + + K G+ A E+ M +R + + +D K N
Sbjct: 306 MIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENC 365
Query: 127 IAAAEKYFNGLSEYA--KNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNN 184
+ A + F+ + + TY L+N YCK + + LF ++ + NT+ +N
Sbjct: 366 LHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNT 425
Query: 185 LSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNEC 244
L + + G+ + L +M R + +TY + + DG +C+
Sbjct: 426 LVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILL---------DG-------LCDNG 469
Query: 245 EDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVN 304
E + E+FEK + + L Y+ +I CN S +D
Sbjct: 470 E-------------LNKALEIFEKMQKSRMTL------GIGIYNIIIHGMCNASKVD--- 507
Query: 305 RVWGILKS----TFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVII 360
W + S P +Y V++ L K ++ F + + + D +++I
Sbjct: 508 DAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILI 567
Query: 361 RAYL 364
RA+L
Sbjct: 568 RAHL 571
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 69/319 (21%), Positives = 137/319 (42%), Gaps = 10/319 (3%)
Query: 63 ALNAYI-MEGKTVRKDMLEYC--VRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLD 119
ALN + ME K +R +++ Y + L +GR+ A ++ M RK++ F+ +D
Sbjct: 275 ALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALID 334
Query: 120 LTAKTNGIAAAEKYFNGLSEYAKNR--YTYGALLNCYCKELMTERALALFEKMDELKFLG 177
K + AEK ++ + + + + TY +L+N +C + A +FE M
Sbjct: 335 AFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFP 394
Query: 178 NTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVF 237
+ V +N L + + + E+ + +M QR + + +TY + +Q D D + +F
Sbjct: 395 DVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIF 454
Query: 238 YEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLE--EMKPRDRKAYHFLISLYC 295
EM ++ TY+ L K EKA + + L+ +M+P Y+ +I C
Sbjct: 455 KEMVSDGVPP-NIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPT-IYTYNIMIEGMC 512
Query: 296 NTSNL-DAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMR 354
+ D + + P +Y ++ + + + F+E + + +
Sbjct: 513 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSG 572
Query: 355 LADVIIRAYLQKDMYEEAA 373
+ +IRA L+ E +A
Sbjct: 573 CYNTLIRARLRDGDREASA 591
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 89/399 (22%), Positives = 166/399 (41%), Gaps = 31/399 (7%)
Query: 100 EWMESRKMHFSYTDFAVYLDLTAKTNG----IAAAEKYFN-GLSEYAKNRYTYGALLNCY 154
E ++SR S +F+ L AK N I+ E+ N G+ N YTY L+NC+
Sbjct: 71 EMVKSRPFP-SIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPH---NHYTYSILINCF 126
Query: 155 CKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQM-----KQRN 209
C+ ALA+ KM +L + N V ++L Y + + LV+QM +
Sbjct: 127 CRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNT 186
Query: 210 ISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKA 269
++ + L + +++ + + + ++R+ + C TY + + K + A
Sbjct: 187 VTFNTLIHGLFLHNKAS-EAMALIDRMVAKGCQP-----DLVTYGVVVNGLCKRGDTDLA 240
Query: 270 ELALKKLEEMKPRDRK-AYHFLISLYCNTSNL-DAVNRVWGILKSTFPPTNTSYLVLLQA 327
L K+E+ K Y+ +I C ++ DA+N + P +Y L+
Sbjct: 241 FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 300
Query: 328 LAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASA 387
L + + R + D+ +I A++++ EA +++ KR+ +
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 360
Query: 388 RFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDV-D 446
+ S + + +LD A E +S+ H P VT +T + F + K V +
Sbjct: 361 --IVTYSSLINGFCMHDRLDEAKQMFEFMVSK----HCFPDVVTYNTLIKGFCKYKRVEE 414
Query: 447 GAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDMRQ 485
G E F ++ + + Y++LI+ AG DM Q
Sbjct: 415 GMEVFREMSQRGLVGNTVTYNILIQGLFQAGD--CDMAQ 451
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 104/235 (44%), Gaps = 9/235 (3%)
Query: 147 YGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMK 206
Y +++ CK + AL LF++M+ N V +++L + G+ L++ M
Sbjct: 259 YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 318
Query: 207 QRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELF 266
+R I+ D T+ + ++ + E+++ EM D TYS+L + + +
Sbjct: 319 ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDP-SIVTYSSLINGFCMHDRL 377
Query: 267 EKAELALKKLEEMKPR----DRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNT-SY 321
++A+ + E M + D Y+ LI +C ++ V+ + NT +Y
Sbjct: 378 DEAK---QMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTY 434
Query: 322 LVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIF 376
+L+Q L + D+ ++ F+E S ++ + ++ + E+A ++F
Sbjct: 435 NILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVF 489
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/299 (18%), Positives = 120/299 (40%), Gaps = 11/299 (3%)
Query: 85 SLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE--YAK 142
++ K ++ + + E M++ + ++ +++ ++ + + + A + + Y
Sbjct: 90 AIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEP 149
Query: 143 NRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLV 202
N T +LLN YC A+AL ++M + NTV FN L + + L+
Sbjct: 150 NIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALI 209
Query: 203 NQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECED---KCRWTTYSNLASI 259
++M + D +TY V + D D + + + N+ E + Y+ +
Sbjct: 210 DRMVAKGCQPDLVTYGVVVNGLCKRGDTD----LAFNLLNKMEQGKLEPGVLIYNTIIDG 265
Query: 260 YVKAELFEKAELALKKLEEMKPR-DRKAYHFLISLYCNTSNLDAVNRVWG-ILKSTFPPT 317
K + + A K++E R + Y LIS CN +R+ +++ P
Sbjct: 266 LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPD 325
Query: 318 NTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIF 376
++ L+ A K + ++ ++E R + +I + D +EA +F
Sbjct: 326 VFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 384
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 2/134 (1%)
Query: 85 SLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLS--EYAK 142
L K G+ A+ V E+++ KM + + + ++ K + F LS
Sbjct: 475 GLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKP 534
Query: 143 NRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLV 202
+ Y +++ +C++ E A ALF++M E L N+ +N L LR G E L+
Sbjct: 535 DVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELI 594
Query: 203 NQMKQRNISLDNLT 216
+M+ + D T
Sbjct: 595 KEMRSCGFAGDAST 608
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 129/302 (42%), Gaps = 23/302 (7%)
Query: 91 RYRHALEVIEWMESRKMHFSYTD---FAVYLDLTAKTNGIAAAEKYFNGLSE--YAKNRY 145
++ AL +W +K + S D A+ + + K +++A FNGL E ++ + Y
Sbjct: 150 KFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVY 209
Query: 146 TYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQP-EKVRPLVNQ 204
+Y +L++ + A+ +F+KM+E + +N + ++ ++G P K+ LV +
Sbjct: 210 SYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEK 269
Query: 205 MKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEM--CNECEDKCRWTTYSNLASIYVK 262
MK I+ D TY + + +VF EM DK TY+ L +Y K
Sbjct: 270 MKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDK---VTYNALLDVYGK 326
Query: 263 AELFEKAELALKKLEEM-----KPRDRKAYHFLISLYCNTSNLDAVNRVWGIL--KSTFP 315
+ + + A+K L EM P Y+ LIS Y LD + + K T P
Sbjct: 327 SH---RPKEAMKVLNEMVLNGFSP-SIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKP 382
Query: 316 PTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALI 375
T Y LL + ++ FEE + ++ + I+ Y + + E I
Sbjct: 383 DVFT-YTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKI 441
Query: 376 FN 377
F+
Sbjct: 442 FD 443
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 129/301 (42%), Gaps = 24/301 (7%)
Query: 90 GRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKT----NGIAA-AEKY-FNGLSEYAKN 143
GRYR A+ V + ME + + V L++ K N I + EK +G+ A +
Sbjct: 222 GRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGI---APD 278
Query: 144 RYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVN 203
YTY L+ C + + + A +FE+M F + V +N L +Y + +P++ ++N
Sbjct: 279 AYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLN 338
Query: 204 QMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWT---TYSNLASIY 260
+M S +TY + +Y+ DG+ E+ N+ +K TY+ L S +
Sbjct: 339 EMVLNGFSPSIVTYNSLISAYAR----DGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGF 394
Query: 261 VKAELFEKAELALKKLEEMKPRDRKA----YHFLISLYCNTSNLDAVNRVWG-ILKSTFP 315
+A K E A+ EEM+ K ++ I +Y N + +++ I
Sbjct: 395 ERA---GKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLS 451
Query: 316 PTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALI 375
P ++ LL + + F+E + + + +I AY + +E+A +
Sbjct: 452 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTV 511
Query: 376 F 376
+
Sbjct: 512 Y 512
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/337 (17%), Positives = 138/337 (40%), Gaps = 12/337 (3%)
Query: 143 NRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLV 202
N T+ A + Y + +F++++ + V +N L ++ + G +V +
Sbjct: 418 NICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVF 477
Query: 203 NQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVK 262
+MK+ + T+ + +YS + V+ M + +TY+ + + +
Sbjct: 478 KEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTP-DLSTYNTVLAALAR 536
Query: 263 AELFEKAELALKKLEEMKPRDRK-AYHFLISLYCNTSNLDAVNRVWG-ILKSTFPPTNTS 320
++E++E L ++E+ + + + Y L+ Y N + ++ + + P
Sbjct: 537 GGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVL 596
Query: 321 YLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAK 380
L+ +K + + ++ F E + R S D+ + ++ Y ++ M +A + + K
Sbjct: 597 LKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMK 656
Query: 381 KRANASARFFKSRESF-MIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDT-FFRF 438
+R F S ++ + Y+ SR D + E L E +P ++ +T + +
Sbjct: 657 ERG-----FTPSMATYNSLMYMHSRSADFG--KSEEILREILAKGIKPDIISYNTVIYAY 709
Query: 439 FEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIA 475
+ D + F ++ S D Y+ I +Y A
Sbjct: 710 CRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAA 746
Score = 33.5 bits (75), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 99/240 (41%), Gaps = 16/240 (6%)
Query: 252 TYSNLASIYVKAELFEKAELALKKLEE--MKPRDRKAYHFLISLYCNTSNLDAVNRVWGI 309
+Y++L S + + + +A KK+EE KP Y+ +++++ N++ +
Sbjct: 210 SYTSLISAFANSGRYREAVNVFKKMEEDGCKPT-LITYNVILNVFGKMGT--PWNKITSL 266
Query: 310 LK----STFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQ 365
++ P +Y L+ + + Q FEE ++ SYD + ++ Y +
Sbjct: 267 VEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGK 326
Query: 366 KDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHW 425
+EA + N + N + + S + Y R LD A+ E++ ++E
Sbjct: 327 SHRPKEAMKVLN--EMVLNGFSPSIVTYNSLISAYARDGMLDEAM-ELKNQMAEKGT--- 380
Query: 426 RPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNC-LDFSAYSLLIKTYIAAGKLASDMR 484
+P T T FE V+ A + +++ C + ++ IK Y GK M+
Sbjct: 381 KPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMK 440
>sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protein At5g39980,
chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2
SV=1
Length = 678
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 132/286 (46%), Gaps = 7/286 (2%)
Query: 83 VRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGL--SEY 140
+ S K G + AL ++ ME ++ ++ ++L+ + + A F+ L S
Sbjct: 197 ITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGI 256
Query: 141 AKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRP 200
+ Y +++N Y K + A L ++M+E L NTV+++ L ++Y+ + +
Sbjct: 257 TPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALS 316
Query: 201 LVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIY 260
+ +MK+ N +LD T + + Y L+ + +R+F+ + + + + +Y+ + +Y
Sbjct: 317 VFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSL-RKMDIEPNVVSYNTILRVY 375
Query: 261 VKAELFEKAELALKKLEEMKPRDRKA--YHFLISLYCNTSNLD-AVNRVWGILKSTFPPT 317
+AELF +A + L +L + K ++ Y+ +I +Y T + A N V + P
Sbjct: 376 GEAELFGEA-IHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPN 434
Query: 318 NTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAY 363
+Y ++ K +D F++ S D L +I AY
Sbjct: 435 AITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAY 480
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 115/258 (44%), Gaps = 6/258 (2%)
Query: 75 RKDMLEYCVRSLRKFGRYRHALEVIEWM-ESRKMHFSYTDFAVYLDLTAKTNGIAAAEKY 133
R+ + + V L + ++ +L +++W+ E K S + V L + A
Sbjct: 118 RQLSIRFMVSLLSRENDWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFDIAHGL 177
Query: 134 FNGLSE--YAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLR 191
F+ + + A +RYTY L+ + KE M + AL+ +KM++ + G+ V ++NL + R
Sbjct: 178 FDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRR 237
Query: 192 LGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWT 251
L K + +++K+ I+ D + Y + Y + EM NE
Sbjct: 238 LCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEM-NEAGVLPNTV 296
Query: 252 TYSNLASIYVKAELFEKAELALKKLEEMK-PRDRKAYHFLISLYCNTSNLDAVNRV-WGI 309
+YS L S+YV+ F +A +++E+ D + +I +Y + +R+ W +
Sbjct: 297 SYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSL 356
Query: 310 LKSTFPPTNTSYLVLLQA 327
K P SY +L+
Sbjct: 357 RKMDIEPNVVSYNTILRV 374
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/273 (21%), Positives = 109/273 (39%), Gaps = 13/273 (4%)
Query: 67 YIMEGKTVRKDMLEY--CVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKT 124
Y ME K +R D + Y + L GR+ A ++ M RK+ + F +D K
Sbjct: 208 YCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKE 267
Query: 125 NGIAAAEKYFNGL--SEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAF 182
+ A + + N +TY +L+N +C A +F+ M + V +
Sbjct: 268 GNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTY 327
Query: 183 NNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCN 242
N L T + + + E L +M + + D TY + Y ++ ++VF M
Sbjct: 328 NTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMV- 386
Query: 243 ECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMK-PRDRKAYHFLISLYCNTSNLD 301
+C TY+ L EKA + ++ L++ + D Y+ +I C T D
Sbjct: 387 DCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRT---D 443
Query: 302 AVNRVWGILKS----TFPPTNTSYLVLLQALAK 330
+ W + +S P +Y+ ++ L +
Sbjct: 444 KLKEAWCLFRSLTRKGVKPDAIAYITMISGLCR 476
Score = 41.2 bits (95), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 91/235 (38%), Gaps = 5/235 (2%)
Query: 146 TYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQM 205
T G+LLN +C+ + A++L + MD F+ N V +N + + + M
Sbjct: 151 TLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCM 210
Query: 206 KQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVK-AE 264
+++ I D +TY + S+ R+ +M D ++ L +VK
Sbjct: 211 EKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDP-NVIFFTALIDTFVKEGN 269
Query: 265 LFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGIL--KSTFPPTNTSYL 322
L E L + + + Y+ LI+ +C L ++ ++ K FP T Y
Sbjct: 270 LLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVT-YN 328
Query: 323 VLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFN 377
L+ K ++ + F E + D + +I Y Q A +FN
Sbjct: 329 TLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFN 383
Score = 39.3 bits (90), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 94/228 (41%), Gaps = 13/228 (5%)
Query: 163 ALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQ 222
A L M + K N + F L +++ G + R L +M +R++ + TY +
Sbjct: 238 AARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLIN 297
Query: 223 SYSHLNDIDGVERVFYEMCNECEDKC--RWTTYSNLASIYVKAELFEKAELALKKLEEMK 280
+ + + +F M ++ C TY+ L + + K++ + E +K EM
Sbjct: 298 GFCIHGCLGDAKYMFDLMVSK---GCFPDVVTYNTLITGFCKSK---RVEDGMKLFCEMT 351
Query: 281 PR----DRKAYHFLISLYCNTSNLDAVNRVWG-ILKSTFPPTNTSYLVLLQALAKLNAID 335
+ D Y+ LI YC L+ +V+ ++ P +Y +LL L I+
Sbjct: 352 YQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIE 411
Query: 336 ILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRA 383
E+ + D+ ++II+ + D +EA +F + ++
Sbjct: 412 KALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKG 459
Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 59/283 (20%), Positives = 114/283 (40%), Gaps = 10/283 (3%)
Query: 100 EWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE--YAKNRYTYGALLNCYCKE 157
E ++SR + S DF L + AK N ++ + + + Y++ L++C+C+
Sbjct: 69 EMLQSRPIP-SIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRC 127
Query: 158 LMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTY 217
ALAL KM +L F + V +L + + + ++ LV+ M + + Y
Sbjct: 128 SRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIY 187
Query: 218 IVWMQSYSHLNDIDGVERVFYEMCNECED-KCRWTTYSNLASIYVKAELFEKAELALKKL 276
+ D++ VFY C E + + TY+ L S + + A L+ +
Sbjct: 188 NTVINGLCKNRDLNNALEVFY--CMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDM 245
Query: 277 EEMKPRDRKAYHF--LISLYCNTSN-LDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNA 333
+ K D F LI + N L+A N +++ + P +Y L+
Sbjct: 246 VKRKI-DPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGC 304
Query: 334 IDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIF 376
+ K F+ S+ D+ + +I + + E+ +F
Sbjct: 305 LGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLF 347
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 88/189 (46%), Gaps = 5/189 (2%)
Query: 60 VTGALNAYI-MEGKTVRKDMLEYC--VRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAV 116
V ALN + ME K +R +++ Y + L +GR+ A +++ M +K++ + F
Sbjct: 201 VDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNA 260
Query: 117 YLDLTAKTNGIAAAEKYFNGLSEYA--KNRYTYGALLNCYCKELMTERALALFEKMDELK 174
+D K AEK + + + + + +TY +L+N +C ++A +FE M
Sbjct: 261 LIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKD 320
Query: 175 FLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVE 234
+ +N L + + + E L +M R + D +TY +Q H D D +
Sbjct: 321 CFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQ 380
Query: 235 RVFYEMCNE 243
+VF +M ++
Sbjct: 381 KVFKQMVSD 389
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 70/315 (22%), Positives = 127/315 (40%), Gaps = 12/315 (3%)
Query: 141 AKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRP 200
+ N YTY L+NC+C+ ALAL KM +L + + V ++L Y +
Sbjct: 42 SHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVA 101
Query: 201 LVNQMKQRNISLDNLTYIVWMQS-YSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASI 259
LV+QM + D +T+ + + H + V V + C+ TY + +
Sbjct: 102 LVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQP--NLVTYGVVVNG 159
Query: 260 YVKAELFEKAELALKKLEEMKPR-DRKAYHFLISLYCNTSNL-DAVNRVWGILKSTFPPT 317
K + A L K+E K D ++ +I C ++ DA+N + P
Sbjct: 160 LCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPN 219
Query: 318 NTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFN 377
+Y L+ L Q + + + ++ + +I A++++ + EA + +
Sbjct: 220 VVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHD 279
Query: 378 NAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFR 437
+ KR+ F + S + + +LD A E +S+ P T +T +
Sbjct: 280 DMIKRSIDPDIF--TYNSLINGFCMHDRLDKAKQMFEFMVSK----DCFPDLDTYNTLIK 333
Query: 438 FFEEEKDV-DGAEEF 451
F + K V DG E F
Sbjct: 334 GFCKSKRVEDGTELF 348
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 16/148 (10%)
Query: 69 MEGKTVRKDMLEYCV--RSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNG 126
M V D++ Y + L G+ ALEV ++M+ ++ D +Y T G
Sbjct: 386 MVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL---DIYIY---TTMIEG 439
Query: 127 IAAAEKYFNG--------LSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGN 178
+ A K +G L N TY +++ C + + + A AL +KM E L +
Sbjct: 440 MCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPD 499
Query: 179 TVAFNNLSTMYLRLGQPEKVRPLVNQMK 206
+ +N L +LR G L+ +M+
Sbjct: 500 SGTYNTLIRAHLRDGDKAASAELIREMR 527
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 78/363 (21%), Positives = 137/363 (37%), Gaps = 50/363 (13%)
Query: 140 YAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVR 199
Y + T +LLN YC A+AL ++M E+ + +T+ F L + +
Sbjct: 76 YEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAV 135
Query: 200 PLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASI 259
LV++M QR + +TY V + DID + + + N+ E +I
Sbjct: 136 ALVDRMVQRGCQPNLVTYGVVVNGLCKRGDID----LAFNLLNKMEAAKIEADVVIFNTI 191
Query: 260 YVKAELFEKAELALKKLEEMKPRDRK----AYHFLISLYCNTSNL-DAVNRVWGILKSTF 314
+ + AL +EM+ + + Y LIS C+ DA + +++
Sbjct: 192 IDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI 251
Query: 315 PPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAAL 374
P ++ L+ A K F E E +L D +I+ + D++ +L
Sbjct: 252 NPNLVTFNALIDAFVKEGK-------FVEAE--------KLHDDMIKRSIDPDIFTYNSL 296
Query: 375 I----FNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFH-----W 425
I ++ +A F S++ F LD N + ++K+ +
Sbjct: 297 INGFCMHDRLDKAKQMFEFMVSKDCF-------PDLD-TYNTLIKGFCKSKRVEDGTELF 348
Query: 426 RPMQ--------VTVDTFFRFFEEEKDVDGAEEFCKVLKSLNC-LDFSAYSLLIKTYIAA 476
R M VT T + + D D A++ K + S D YS+L+
Sbjct: 349 REMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNN 408
Query: 477 GKL 479
GKL
Sbjct: 409 GKL 411
>sp|Q8GZ63|PP397_ARATH Pentatricopeptide repeat-containing protein At5g25630
OS=Arabidopsis thaliana GN=At5g25630 PE=2 SV=2
Length = 574
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 87/173 (50%), Gaps = 4/173 (2%)
Query: 137 LSEYAK-NRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQP 195
+ E AK N T G ++ YC+E L +M E++ N V FN+L ++ +
Sbjct: 252 MKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFVEVMDR 311
Query: 196 EKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSN 255
+ + ++ MK+ N+ D +TY M ++S ++ +VF EM + K YS
Sbjct: 312 DGIDEVLTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMV-KAGVKPDAHAYSI 370
Query: 256 LASIYVKAELFEKAELALKKL-EEMKPRDRKAYHFLISLYCNTSNLDAVNRVW 307
LA YV+A+ +KAE L+ L E +P + + +IS +C+ ++D RV+
Sbjct: 371 LAKGYVRAKEPKKAEELLETLIVESRP-NVVIFTTVISGWCSNGSMDDAMRVF 422
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 80/198 (40%), Gaps = 41/198 (20%)
Query: 136 GLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQP 195
G + N T+ L+ +CK+ E A + +KM+E +TV +N ++T Y++ G+
Sbjct: 180 GNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIATCYVQKGET 239
Query: 196 --------------EKVRP-----------------------LVNQMKQRNISLDNLTYI 218
EK +P V +MK+ + + + +
Sbjct: 240 VRAESEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFN 299
Query: 219 VWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEE 278
+ + + D DG++ V M EC K TYS + + + A EKA K++ +
Sbjct: 300 SLINGFVEVMDRDGIDEVLTLM-KECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVK 358
Query: 279 --MKPRDRKAYHFLISLY 294
+KP D AY L Y
Sbjct: 359 AGVKP-DAHAYSILAKGY 375
Score = 32.7 bits (73), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/88 (20%), Positives = 40/88 (45%)
Query: 137 LSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPE 196
+ E N + +++ +C + A+ +F KM + N F L YL + QP
Sbjct: 392 IVESRPNVVIFTTVISGWCSNGSMDDAMRVFNKMCKFGVSPNIKTFETLMWGYLEVKQPW 451
Query: 197 KVRPLVNQMKQRNISLDNLTYIVWMQSY 224
K ++ M+ + +N T+++ +++
Sbjct: 452 KAEEVLQMMRGCGVKPENSTFLLLAEAW 479
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 128/296 (43%), Gaps = 19/296 (6%)
Query: 86 LRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLT---AKTNGIAAAEKYFN--GLSEY 140
+ R R A E + +S K F D VY +L + I+ AEK F L+
Sbjct: 228 ISNLSRKRRASEAQSFFDSLKDRFE-PDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGI 286
Query: 141 AKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRP 200
N YTY +++ C+ RA +F M + N + FNNL ++++ G+ EKV
Sbjct: 287 EPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQ 346
Query: 201 LVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMC-NECEDKCRWTTYSNLASI 259
+ NQMK+ D +TY ++++ +++ +V M +CE +T++ +
Sbjct: 347 VYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCE--VNASTFNTIFRY 404
Query: 260 YVKAELFEKAELALKKLEEMK-PRDRKAYHFLISLYCNTSNLDAVNRVWGIL--KSTFPP 316
K A K+ E K + Y+ L+ ++ + + D V ++ + K P
Sbjct: 405 IEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPN 464
Query: 317 TNTSYLVLLQALAKL----NAIDILKQCFEE--WESRCSSYDMRLADVIIRAYLQK 366
NT Y +L+ + NA + K+ EE S Y+M LA + L+K
Sbjct: 465 VNT-YRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKK 519
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 57/292 (19%), Positives = 123/292 (42%), Gaps = 25/292 (8%)
Query: 201 LVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEM----CNECEDKCRWT-TYSN 255
L++ MK RN+ + T+ + ++ Y F M C DK ++ SN
Sbjct: 173 LIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGC--VPDKIAFSIVISN 230
Query: 256 LASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILK-STF 314
L+ +E A+ L++ D Y L+ +C + +V+ +K +
Sbjct: 231 LSRKRRASE----AQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGI 286
Query: 315 PPTNTSYLVLLQALAKLNAIDILKQCFEEW-ESRCSSYDMRLADVIIRAYLQKDMYEEAA 373
P +Y +++ AL + I F + +S C+ + + ++R +++ E+
Sbjct: 287 EPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNN-LMRVHVKAGRTEKVL 345
Query: 374 LIFNNAKKRANASARFFKSRESFMI-YYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTV 432
++N KK +F+I + R L+ A+ + + + + + T
Sbjct: 346 QVYNQMKKLGCEPDTI---TYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNAS----TF 398
Query: 433 DTFFRFFEEEKDVDGAEEFCKVLKSLNC-LDFSAYSLLIKTYIAAGKLASDM 483
+T FR+ E+++DV+GA + C + Y++L++ ++ G ++DM
Sbjct: 399 NTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFV--GSKSTDM 448
>sp|O81908|PPR2_ARATH Pentatricopeptide repeat-containing protein At1g02060,
chloroplastic OS=Arabidopsis thaliana GN=At1g02060 PE=2
SV=2
Length = 710
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 117/271 (43%), Gaps = 12/271 (4%)
Query: 83 VRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE--- 139
+RS G ++ ++++ + M+ + S F L + K A F+ +
Sbjct: 145 IRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTYG 204
Query: 140 YAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVR 199
+ YT+ L+N +CK M + A +F+ M+ + V +N + R G+ +
Sbjct: 205 VTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAH 264
Query: 200 PLVNQM--KQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLA 257
+++ M K ++ + ++Y ++ Y +ID VF++M + K TY+ L
Sbjct: 265 NVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGL-KPNAVTYNTLI 323
Query: 258 SIYVKAELFEKAELAL----KKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWG-ILKS 312
+A +++ + L P D ++ LI +C+ +LDA +V+ +L
Sbjct: 324 KGLSEAHRYDEIKDILIGGNDAFTTFAP-DACTFNILIKAHCDAGHLDAAMKVFQEMLNM 382
Query: 313 TFPPTNTSYLVLLQALAKLNAIDILKQCFEE 343
P + SY VL++ L N D + F E
Sbjct: 383 KLHPDSASYSVLIRTLCMRNEFDRAETLFNE 413
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 79/419 (18%), Positives = 169/419 (40%), Gaps = 34/419 (8%)
Query: 83 VRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYF-------N 135
+++LR L +W+ ++ F + L+ + + A + N
Sbjct: 72 LQTLRLIKVPADGLRFFDWVSNKGFSHKEQSFFLMLEFLGRARNLNVARNFLFSIERRSN 131
Query: 136 GLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQP 195
G + ++RY + +L+ Y + + ++ LF+ M ++ + + FN+L ++ L+ G+
Sbjct: 132 GCVKL-QDRY-FNSLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRT 189
Query: 196 EKVRPLVNQMKQR-NISLDNLTYIVWMQSYSHLNDIDGVERVFYEM----CNECEDKCRW 250
L ++M++ ++ D+ T+ + + + +D R+F +M CN
Sbjct: 190 GMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNP-----DV 244
Query: 251 TTYSNLASIYVKAELFEKAELA----LKKLEEMKPRDRKAYHFLISLYCNTSNLD-AVNR 305
TY+ + +A + A LKK ++ P + +Y L+ YC +D AV
Sbjct: 245 VTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHP-NVVSYTTLVRGYCMKQEIDEAVLV 303
Query: 306 VWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSY--DMRLADVIIRAY 363
+L P +Y L++ L++ + D +K +++ D +++I+A+
Sbjct: 304 FHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAH 363
Query: 364 LQKDMYEEAALIFN---NAKKRANASARFFKSRESFMIY-YLRSRQLDLALNEMEAALSE 419
+ A +F N K ++++ R M + R+ L L E E L +
Sbjct: 364 CDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLGK 423
Query: 420 AKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGK 478
+ +P+ + F + AE+ + L D +Y LI + GK
Sbjct: 424 DE---CKPLAAAYNPMFEYLCANGKTKQAEKVFRQLMKRGVQDPPSYKTLITGHCREGK 479
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 81/378 (21%), Positives = 147/378 (38%), Gaps = 64/378 (16%)
Query: 44 DKLYKRLSALGATGGSV--TGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEW 101
DK K + G V TG +N Y +GK + E C YR
Sbjct: 542 DKYVKEMRECGVLPNKVLCTGLINEYCKKGKVI-----EAC-------SAYRS------- 582
Query: 102 MESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGL--SEYAKNRYTYGALLNCYCKELM 159
M + + + V ++ K + + AE+ F + A + ++YG L+N + K
Sbjct: 583 MVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGN 642
Query: 160 TERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIV 219
++A ++F++M E N + +N L + R G+ EK + L+++M + + + +TY
Sbjct: 643 MQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCT 702
Query: 220 WMQSYSHLNDIDGVERVFYEM------------CNECEDKCRWTTYSNLASIYVKAEL-- 265
+ Y D+ R+F EM + CR +I+ +
Sbjct: 703 IIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGC 762
Query: 266 ----------------FEKAELALKKLEEM---------KPRDRKAYHFLISLYCNTSNL 300
F K EL + L + KP D Y+ +I C NL
Sbjct: 763 ASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDV-TYNIMIDYLCKEGNL 821
Query: 301 DAVNRVWGILK-STFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVI 359
+A ++ ++ + PT +Y LL K+ + F+E + D + VI
Sbjct: 822 EAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVI 881
Query: 360 IRAYLQKDMYEEAALIFN 377
I A+L++ M +A ++ +
Sbjct: 882 INAFLKEGMTTKALVLVD 899
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 97/230 (42%), Gaps = 11/230 (4%)
Query: 128 AAAEKYFNGLSEYA--KNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNL 185
A+A+KY + E N+ L+N YCK+ A + + M + LG+ + L
Sbjct: 539 ASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVL 598
Query: 186 STMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECE 245
+ + + + +M+ + I+ D +Y V + +S L ++ +F EM E
Sbjct: 599 MNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGL 658
Query: 246 DKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPR----DRKAYHFLISLYCNTSNLD 301
Y+ L + ++ EKA+ + L+EM + + Y +I YC + +L
Sbjct: 659 TP-NVIIYNMLLGGFCRSGEIEKAK---ELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLA 714
Query: 302 AVNRVWGILK-STFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSS 350
R++ +K P + Y L+ +LN ++ F + C+S
Sbjct: 715 EAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCAS 764
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 99/244 (40%), Gaps = 10/244 (4%)
Query: 42 NEDKLYKRLSALGATGGSVTGALN---AYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEV 98
+D L+K +V GAL + I +G K + + L K R A +
Sbjct: 240 GKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSL 299
Query: 99 IEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKN--RYTYGALLNCYCK 156
+ M+S + +++ +D K AA+ + + + N Y Y + K
Sbjct: 300 LVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSK 359
Query: 157 ELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLT 216
E + E+A ALF+ M + A+ +L Y R + L+ +MK+RNI + T
Sbjct: 360 EGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYT 419
Query: 217 YIVWMQSYSHLNDIDGVERVFYEMCNECEDKCR--WTTYSNLASIYVKAELFEKAELALK 274
Y ++ D+DG + EM CR Y+ L +++ F A LK
Sbjct: 420 YGTVVKGMCSSGDLDGAYNIVKEM---IASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLK 476
Query: 275 KLEE 278
+++E
Sbjct: 477 EMKE 480
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 97/235 (41%), Gaps = 3/235 (1%)
Query: 145 YTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQ 204
YTYG ++ C + A + ++M N V + L +L+ + ++ +
Sbjct: 418 YTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKE 477
Query: 205 MKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAE 264
MK++ I+ D Y + S +D EM E K TY S Y++A
Sbjct: 478 MKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMV-ENGLKPNAFTYGAFISGYIEAS 536
Query: 265 LFEKAELALKKLEEMKPRDRKAY-HFLISLYCNTSN-LDAVNRVWGILKSTFPPTNTSYL 322
F A+ +K++ E K LI+ YC ++A + ++ +Y
Sbjct: 537 EFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYT 596
Query: 323 VLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFN 377
VL+ L K + +D ++ F E + + D+ V+I + + ++A+ IF+
Sbjct: 597 VLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFD 651
Score = 38.9 bits (89), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 74/164 (45%), Gaps = 9/164 (5%)
Query: 143 NRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLV 202
N TY +++ CKE E A LF +M + + + +L Y ++G+ ++ P+
Sbjct: 804 NDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVF 863
Query: 203 NQMKQRNISLDNLTYIVWMQSY----SHLNDIDGVERVFYEMCNECEDKCRW--TTYSNL 256
++ I D++ Y V + ++ + V+++F + N +D C+ +T L
Sbjct: 864 DEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAK--NAVDDGCKLSISTCRAL 921
Query: 257 ASIYVKAELFEKAELALKKLEEMK-PRDRKAYHFLISLYCNTSN 299
S + K E AE ++ + ++ D LI+ C +SN
Sbjct: 922 LSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESCISSN 965
Score = 33.5 bits (75), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 81/410 (19%), Positives = 149/410 (36%), Gaps = 36/410 (8%)
Query: 77 DMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNG 136
D + L FG + AL V+E M R + + I + F G
Sbjct: 98 DSFSFLALDLCNFGSFEKALSVVERMIERNWPVAEV-----------WSSIVRCSQEFVG 146
Query: 137 LSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPE 196
S+ + +G L + Y + E A+ +F L+ + L LR + +
Sbjct: 147 KSD---DGVLFGILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLD 203
Query: 197 KVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNL 256
+ M +RN+ D TY + + ++ ++ + V ++ E + R T +
Sbjct: 204 LFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKT----EKEFRTATLNVD 259
Query: 257 ASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNL-DAVNRVWGILKSTFP 315
++ +K + K + LK Y LI C L DA + + +
Sbjct: 260 GALKLKESMICKGLVPLK----------YTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVS 309
Query: 316 PTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALI 375
N +Y +L+ L K D K E S + + D I ++ + E+A +
Sbjct: 310 LDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKAL 369
Query: 376 FNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTF 435
F+ A+ ++ S + Y R + + + L E K+ + T T
Sbjct: 370 FDGMI--ASGLIPQAQAYASLIEGYCREKN----VRQGYELLVEMKKRNIVISPYTYGTV 423
Query: 436 FRFFEEEKDVDGAEEFCKVLKSLNC-LDFSAYSLLIKTYIAAGKLASDMR 484
+ D+DGA K + + C + Y+ LIKT++ + MR
Sbjct: 424 VKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMR 473
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2
SV=2
Length = 1440
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 130/288 (45%), Gaps = 14/288 (4%)
Query: 66 AYIMEGKTVRKDMLEYC--VRSLRKFGRYRHALEVIEWMESRKMHFSYTDF-AVYLDLTA 122
A I++ + V+ +YC V+S+ + ++ ALEV EW+ R H A L +
Sbjct: 144 ADILDARLVQMTPTDYCFVVKSVGQ-ESWQRALEVFEWLNLRHWHSPNARMVAAILGVLG 202
Query: 123 KTNGIAAAEKYFNGLSEYAKNRY-TYGALLNCYCKELMTERALALFEKMDELKFLGNTVA 181
+ N + A + F +R Y A++ Y + +A L + M + + + ++
Sbjct: 203 RWNQESLAVEIFTRAEPTVGDRVQVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLIS 262
Query: 182 FNNLSTMYLRLG--QPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYE 239
FN L L+ G P L++ ++ + D +TY + + S +++DG +VF +
Sbjct: 263 FNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFED 322
Query: 240 M-CNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKP--RDRKAYHFLISLYCN 296
M + C+ W TY+ + S+Y + L +AE +L E+K D Y+ L+ +
Sbjct: 323 MEAHRCQPDL-W-TYNAMISVYGRCGLAAEAERLFMEL-ELKGFFPDAVTYNSLLYAFAR 379
Query: 297 TSNLDAVNRVWGIL-KSTFPPTNTSYLVLLQALAKLNAIDILKQCFEE 343
N + V V+ + K F +Y ++ K +D+ Q +++
Sbjct: 380 ERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKD 427
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 101/242 (41%), Gaps = 4/242 (1%)
Query: 95 ALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEY--AKNRYTYGALLN 152
A+E+++ + + + + L ++ + + A K F + + + +TY A+++
Sbjct: 281 AVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMIS 340
Query: 153 CYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISL 212
Y + + A LF +++ F + V +N+L + R EKV+ + QM++
Sbjct: 341 VYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGK 400
Query: 213 DNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKA-ELFEKAEL 271
D +TY + Y +D +++ +M TY+ L KA E A L
Sbjct: 401 DEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAAL 460
Query: 272 ALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWG-ILKSTFPPTNTSYLVLLQALAK 330
+ L+ + Y LI Y + + +L+S P N +Y V+L L +
Sbjct: 461 MSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLR 520
Query: 331 LN 332
N
Sbjct: 521 GN 522
Score = 40.8 bits (94), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 76/378 (20%), Positives = 136/378 (35%), Gaps = 54/378 (14%)
Query: 64 LNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAK 123
L I G + D L + S GR+ A E++E+++ + L K
Sbjct: 597 LKVAITNGYELENDTLLSILGSYSSSGRHSEAFELLEFLKEHASGSKRLITEALIVLHCK 656
Query: 124 TNGIAAA-EKYFNGLSEYA---KNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNT 179
N ++AA ++YF + + Y LL+C A +F + +
Sbjct: 657 VNNLSAALDEYFADPCVHGWCFGSSTMYETLLHCCVANEHYAEASQVFSDLRLSGCEASE 716
Query: 180 VAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYE 239
++ +Y +LG PE +VNQ + + F+
Sbjct: 717 SVCKSMVVVYCKLGFPETAHQVVNQAETKG---------------------------FHF 749
Query: 240 MCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEM-KPRDRKAYHFLISLYCNTS 298
C+ Y+++ Y K +L++KAE + L + + D K ++ L+S Y
Sbjct: 750 ACS--------PMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCG 801
Query: 299 NLDAVNRVWGILKSTFP-PTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLAD 357
+ ++ + P PT S +LL AL ++ L EE + DM
Sbjct: 802 CYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQ------DMGFKI 855
Query: 358 VIIRAYLQKDMYEEAALIFNNAKKRANASA-------RFFKSRESFMIYYLRSRQLDLAL 410
L D + A IF K ++ A R ++ + R R ++ +
Sbjct: 856 SKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMV 915
Query: 411 NEMEAALSEAKQFHWRPM 428
+EME A + + W M
Sbjct: 916 SEMEEANFKVELAIWNSM 933
Score = 32.7 bits (73), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 6/156 (3%)
Query: 161 ERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNL--TYI 218
++ + +++++ E + +N L MY R +PE+ L+ QM RN+ LD TY
Sbjct: 944 KKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQM--RNLGLDPKLDTYK 1001
Query: 219 VWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEE 278
+ ++ ++ E++F E+ ++ K + Y + I + KAE L+ ++
Sbjct: 1002 SLISAFGKQKCLEQAEQLFEELLSKGL-KLDRSFYHTMMKISRDSGSDSKAEKLLQMMKN 1060
Query: 279 MKPRDRKA-YHFLISLYCNTSNLDAVNRVWGILKST 313
A H L+ Y ++ N +V LK T
Sbjct: 1061 AGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDT 1096
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 85/188 (45%), Gaps = 5/188 (2%)
Query: 58 GSVTGALNAY-IMEGKTVRKDMLEYC--VRSLRKFGRYRHALEVIEWMESRKMHFSYTDF 114
G V AL+ + ME +R D++ Y V L GR+R A ++ M RK+ F
Sbjct: 191 GHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITF 250
Query: 115 AVYLDLTAKTNGIAAAEKYFNGL--SEYAKNRYTYGALLNCYCKELMTERALALFEKMDE 172
+D K AE+ +N + A N +TY +L+N +C E + A +F M+
Sbjct: 251 NALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMET 310
Query: 173 LKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDG 232
+ VA+ +L + + + + + +M Q+ ++ + +TY +Q + + +
Sbjct: 311 KGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNV 370
Query: 233 VERVFYEM 240
+ VF M
Sbjct: 371 AQEVFSHM 378
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/238 (19%), Positives = 99/238 (41%), Gaps = 3/238 (1%)
Query: 147 YGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMK 206
Y +++ CK AL+LF++M+ + V + +L G+ L+ M
Sbjct: 180 YTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMT 239
Query: 207 QRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELF 266
+R I D +T+ + ++ E ++ EM TY++L + +
Sbjct: 240 KRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMI-RMSIAPNIFTYTSLINGFCMEGCV 298
Query: 267 EKAELALKKLEEMKP-RDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNT-SYLVL 324
++A +E D AY LI+ +C +D +++ + NT +Y L
Sbjct: 299 DEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTL 358
Query: 325 LQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKR 382
+Q ++ ++ ++ F SR ++R +V++ ++A +IF + +KR
Sbjct: 359 IQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKR 416
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 121/292 (41%), Gaps = 9/292 (3%)
Query: 91 RYRHALEVIEWM-ESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLS--EYAKNRYTY 147
++ AL++ M ESR + S DF L++ AK + L + + YT
Sbjct: 52 QFNEALDLFTHMVESRPLP-SIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTC 110
Query: 148 GALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQ 207
L+NC+C+ A + KM +L F + V F +L + + E+ +VNQM +
Sbjct: 111 NLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVE 170
Query: 208 RNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFE 267
I D + Y + S ++ +F +M N + Y++L + + +
Sbjct: 171 MGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENY-GIRPDVVMYTSLVNGLCNSGRWR 229
Query: 268 KAELALKKL--EEMKPRDRKAYHFLISLYCNTSN-LDAVNRVWGILKSTFPPTNTSYLVL 324
A+ L+ + ++KP D ++ LI + LDA +++ + P +Y L
Sbjct: 230 DADSLLRGMTKRKIKP-DVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSL 288
Query: 325 LQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIF 376
+ +D +Q F E++ D+ +I + + ++A IF
Sbjct: 289 INGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIF 340
>sp|Q9SF38|PP222_ARATH Pentatricopeptide repeat-containing protein At3g09650,
chloroplastic OS=Arabidopsis thaliana GN=HCF152 PE=2
SV=1
Length = 778
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 85/197 (43%), Gaps = 6/197 (3%)
Query: 88 KFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAK----- 142
K GR ++E M + S+ D Y + + ++ L+E A+
Sbjct: 426 KNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVNAGLMDRARQVLAEMARMGVPA 485
Query: 143 NRYTYGALLNCYCKELMTERALALFEKMDELKFL-GNTVAFNNLSTMYLRLGQPEKVRPL 201
NR TY LL YCK+L +RA L +M E + + V++N + + +
Sbjct: 486 NRITYNVLLKGYCKQLQIDRAEDLLREMTEDAGIEPDVVSYNIIIDGCILIDDSAGALAF 545
Query: 202 VNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYV 261
N+M+ R I+ ++Y M++++ RVF EM N+ K ++ L Y
Sbjct: 546 FNEMRTRGIAPTKISYTTLMKAFAMSGQPKLANRVFDEMMNDPRVKVDLIAWNMLVEGYC 605
Query: 262 KAELFEKAELALKKLEE 278
+ L E A+ + +++E
Sbjct: 606 RLGLIEDAQRVVSRMKE 622
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/247 (18%), Positives = 95/247 (38%), Gaps = 39/247 (15%)
Query: 140 YAKNRYTYGALLNCYCKE---LMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPE 196
+A + Y L+ Y K T R L + D+ + V + + + ++ G +
Sbjct: 410 FAPDSRIYTTLMKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVNAGLMD 469
Query: 197 KVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNL 256
+ R ++ +M + + + +TY V ++ Y ID E + EM + + +Y+ +
Sbjct: 470 RARQVLAEMARMGVPANRITYNVLLKGYCKQLQIDRAEDLLREMTEDAGIEPDVVSYNII 529
Query: 257 ASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP 316
+ L + + AL EM+ R GI P
Sbjct: 530 IDGCI---LIDDSAGALAFFNEMRTR-------------------------GIA-----P 556
Query: 317 TNTSYLVLLQALAKLNAIDILKQCFEEW--ESRCSSYDMRLADVIIRAYLQKDMYEEAAL 374
T SY L++A A + + F+E + R D+ ++++ Y + + E+A
Sbjct: 557 TKISYTTLMKAFAMSGQPKLANRVFDEMMNDPRV-KVDLIAWNMLVEGYCRLGLIEDAQR 615
Query: 375 IFNNAKK 381
+ + K+
Sbjct: 616 VVSRMKE 622
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/305 (22%), Positives = 128/305 (41%), Gaps = 9/305 (2%)
Query: 83 VRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYA- 141
V +L K G + A + ++ M + + + + + + + + A + F +
Sbjct: 370 VDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGV 429
Query: 142 -KNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRP 200
YTY ++ Y K + AL FEKM N VA N + G+ + +
Sbjct: 430 KPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQ 489
Query: 201 LVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMC-NECEDKCRWTTYSNLASI 259
+ +K + D++TY + M+ YS + +ID ++ EM N CE ++L +
Sbjct: 490 IFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDV--IVVNSLINT 547
Query: 260 YVKAELFEKAELALKKLEEM--KPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPT 317
KA+ ++A +++EM KP L L N +A+ G+++ PP
Sbjct: 548 LYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPN 607
Query: 318 NTSYLVLLQALAKLNAIDI-LKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIF 376
++ L L K + + + LK F+ + C D+ + II ++ +EA F
Sbjct: 608 TITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVP-DVFTYNTIIFGLVKNGQVKEAMCFF 666
Query: 377 NNAKK 381
+ KK
Sbjct: 667 HQMKK 671
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/266 (20%), Positives = 110/266 (41%), Gaps = 7/266 (2%)
Query: 121 TAKTNGIAAA----EKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFL 176
+ K N ++ A EK+ L K TY L+ + M E A +F ++ +
Sbjct: 759 SCKHNNVSGARTLFEKFTKDLGVQPK-LPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCI 817
Query: 177 GNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERV 236
+ +N L Y + G+ +++ L +M + +T+ + + ++D +
Sbjct: 818 PDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDL 877
Query: 237 FYEMCNECEDKCRWTTYSNLASIYVK-AELFEKAELALKKLEEMKPRDRKAYHFLISLYC 295
+Y++ ++ + TY L K L+E +L L+ + Y+ LI+ +
Sbjct: 878 YYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFG 937
Query: 296 NTSNLDAVNRVWG-ILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMR 354
DA ++ ++K P +Y VL+ L + +D F+E + + D+
Sbjct: 938 KAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVV 997
Query: 355 LADVIIRAYLQKDMYEEAALIFNNAK 380
++II + EEA ++FN K
Sbjct: 998 CYNLIINGLGKSHRLEEALVLFNEMK 1023
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/328 (19%), Positives = 135/328 (41%), Gaps = 7/328 (2%)
Query: 67 YIMEGKTVRKDMLEY--CVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKT 124
Y M + + D+L Y + + G A ++ M + + F ++ K
Sbjct: 375 YEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKA 434
Query: 125 NGIAAAEKYFNGLSEY--AKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAF 182
+ A + N + + + N TY L++ CKE + A L +M ++ N +
Sbjct: 435 GHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTY 494
Query: 183 NNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCN 242
N++ + G E+ LV + + ++ D +TY M +Y ++D + + EM
Sbjct: 495 NSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLG 554
Query: 243 ECEDKCRWTTYSNLASIYVKAELFEKAELALK-KLEEMKPRDRKAYHFLISLYCNTSNLD 301
+ T++ L + + + E E L L + + ++ L+ YC +NL
Sbjct: 555 KGLQP-TIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLK 613
Query: 302 AVNRVWGILKS-TFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVII 360
A ++ + S P +Y L++ K + F+E + + S + V+I
Sbjct: 614 AATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLI 673
Query: 361 RAYLQKDMYEEAALIFNNAKKRANASAR 388
+ +L++ + EA +F+ ++ A+ +
Sbjct: 674 KGFLKRKKFLEAREVFDQMRREGLAADK 701
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 96/237 (40%), Gaps = 5/237 (2%)
Query: 143 NRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLV 202
N Y YG+++ C+ A F +M L +TV + L + + G
Sbjct: 315 NSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFF 374
Query: 203 NQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEM-CNECEDKCRWTTYSNLASIYV 261
+M R+I+ D LTY + + + D+ ++F+EM C E T++ L + Y
Sbjct: 375 YEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDS--VTFTELINGYC 432
Query: 262 KAELFEKA-ELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWG-ILKSTFPPTNT 319
KA + A + ++ + Y LI C +LD+ N + + K P
Sbjct: 433 KAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIF 492
Query: 320 SYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIF 376
+Y ++ L K I+ + E+E+ + D ++ AY + ++A I
Sbjct: 493 TYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEIL 549
Score = 40.0 bits (92), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 77/397 (19%), Positives = 142/397 (35%), Gaps = 53/397 (13%)
Query: 86 LRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLD-LTAKTNGIAAAEKYFNGLSEYAK-- 142
L FG R A V E M + + S VYL L+ A A F E
Sbjct: 185 LVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCW 244
Query: 143 NRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLV 202
N +Y +++ C+ + A L M+ + + ++++ + Y R G+ +KV L+
Sbjct: 245 NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLI 304
Query: 203 NQMKQR-----------------------------------NISLDNLTYIVWMQSYSHL 227
MK++ I D + Y + +
Sbjct: 305 EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKR 364
Query: 228 NDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVK-AELFEKAELALKKLEEMKPRDRKA 286
DI + FYEM + + TY+ + S + + ++ E +L + + D
Sbjct: 365 GDIRAASKFFYEMHSR-DITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVT 423
Query: 287 YHFLISLYCNTSNLDAVNRVWG-ILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWE 345
+ LI+ YC ++ RV ++++ P +Y L+ L K +D + E
Sbjct: 424 FTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMW 483
Query: 346 SRCSSYDMRLADVIIRAYLQKDMYEEAALI---FNNAKKRANASARFFKSRESFMIYYLR 402
++ + I+ + EEA + F A A+ + + M Y +
Sbjct: 484 KIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTV-----TYTTLMDAYCK 538
Query: 403 SRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFF 439
S ++D A ++ L + Q P VT + F
Sbjct: 539 SGEMDKAQEILKEMLGKGLQ----PTIVTFNVLMNGF 571
>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100
OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2
Length = 666
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/317 (20%), Positives = 132/317 (41%), Gaps = 17/317 (5%)
Query: 69 MEGKTVRKDMLEY--CVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNG 126
M GK + D++ Y V + K G + AL ++ ME + ++ +D K
Sbjct: 252 MVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGH 311
Query: 127 IAAAEKYFNGLSE--YAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNN 184
+ A+ F+ + E A N +TY +++ +C A L M E + + + FN
Sbjct: 312 HSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNA 371
Query: 185 LSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNEC 244
L + ++ G+ + L ++M R I D +TY + + N D + +F M +
Sbjct: 372 LISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASP- 430
Query: 245 EDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPR----DRKAYHFLISLYCNTSNL 300
T++ + +Y +A ++ + ++ L E+ R + Y+ LI +C NL
Sbjct: 431 ----DVVTFNTIIDVYCRA---KRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNL 483
Query: 301 DAVNRVWG-ILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVI 359
+A ++ ++ P + +LL + ++ + FE + D ++I
Sbjct: 484 NAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNII 543
Query: 360 IRAYLQKDMYEEAALIF 376
I + +EA +F
Sbjct: 544 IHGMCKGSKVDEAWDLF 560
Score = 38.9 bits (89), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 58/302 (19%), Positives = 121/302 (40%), Gaps = 20/302 (6%)
Query: 95 ALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE--YAKNRYTYGALLN 152
A+ + ME R++ + F + + + ++ + F L++ + + T+ LL+
Sbjct: 125 AISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLH 184
Query: 153 CYCKE-----------LMTE----RALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEK 197
C E M E A+ALF++M E+ + FN L G+ +
Sbjct: 185 GLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLE 244
Query: 198 VRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLA 257
LVN+M + + +D +TY + + D + +M E K YS +
Sbjct: 245 AAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKM-EETHIKPDVVIYSAII 303
Query: 258 SIYVKAELFEKAE-LALKKLEEMKPRDRKAYHFLISLYCNTSN-LDAVNRVWGILKSTFP 315
K A+ L + LE+ + Y+ +I +C+ DA + +++
Sbjct: 304 DRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREIN 363
Query: 316 PTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALI 375
P ++ L+ A K + ++ +E RC D + +I + + + +++A +
Sbjct: 364 PDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHM 423
Query: 376 FN 377
F+
Sbjct: 424 FD 425
Score = 36.2 bits (82), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 2/128 (1%)
Query: 91 RYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYA--KNRYTYG 148
+ ALE+ E ++ K+ + + + K + + A F L + + TY
Sbjct: 517 KLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYN 576
Query: 149 ALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQR 208
+++ +C + A LF KM + + +N L L+ G+ +K L+++M+
Sbjct: 577 VMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSN 636
Query: 209 NISLDNLT 216
S D T
Sbjct: 637 GFSGDAFT 644
>sp|Q9C545|PPR72_ARATH Putative pentatricopeptide repeat-containing protein At1g43010
OS=Arabidopsis thaliana GN=At1g43010 PE=3 SV=1
Length = 257
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 92/196 (46%), Gaps = 6/196 (3%)
Query: 38 FPTGNEDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALE 97
P N+ L R+ S+ L + +G V L +++L + ALE
Sbjct: 31 LPAANQT-LPSRIKTDINQKASIIPLLEQWRKQGYEVNPSHLRGLIKNLSDCKNFTTALE 89
Query: 98 VIEWMESRKMHFSYT-DFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCK 156
+WM + ++ D A L L G+ AEK F + E ++ Y LL+ Y K
Sbjct: 90 ASKWMFKHSVFDNFPEDCAAQLHLVNTVLGLEEAEKMFKNIPEKMRD---YSVLLSSYTK 146
Query: 157 ELMT-ERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNL 215
+ T ++A A F+KM EL FL FN++ +Y +L + + V L+ ++K+ N+ + +L
Sbjct: 147 PVRTVDKAEATFKKMRELGFLLKPYLFNSMICLYGQLQRLDMVEKLLYKLKKNNMEVGSL 206
Query: 216 TYIVWMQSYSHLNDID 231
+ Y+++N ++
Sbjct: 207 KVNNVSRVYANINAME 222
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 109/262 (41%), Gaps = 9/262 (3%)
Query: 78 MLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGL 137
+L C R G + A + + M +R++ + LD K + A + +
Sbjct: 345 LLAVCSRG----GLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQM 400
Query: 138 S--EYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQP 195
N +Y +++ + K + AL LF +M L + V++N L ++Y ++G+
Sbjct: 401 PVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRS 460
Query: 196 EKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSN 255
E+ ++ +M I D +TY + Y D V++VF EM E TYS
Sbjct: 461 EEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKRE-HVLPNLLTYST 519
Query: 256 LASIYVKAELFEKAELALKKLEEMKPR-DRKAYHFLISLYCNTSNL-DAVNRVWGILKST 313
L Y K L+++A ++ + R D Y LI C + AV+ + + K
Sbjct: 520 LIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEG 579
Query: 314 FPPTNTSYLVLLQALAKLNAID 335
P +Y ++ A + +D
Sbjct: 580 ISPNVVTYNSIIDAFGRSATMD 601
Score = 35.8 bits (81), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 71/317 (22%), Positives = 122/317 (38%), Gaps = 26/317 (8%)
Query: 177 GNTV-AFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLN-DIDGVE 234
GNTV AF+ L + Y R G E+ + N MK+ + + +TY + + + V
Sbjct: 265 GNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVA 324
Query: 235 RVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKA-----ELALKKLEEMKPRDRKAYHF 289
+ F EM R T+++L ++ + L+E A E+ +++E+ D +Y+
Sbjct: 325 KFFDEMQRNGVQPDR-ITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQ----DVFSYNT 379
Query: 290 LISLYCNTSNLDAVNRVWGILK-STFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRC 348
L+ C +D + + P SY ++ AK D F E
Sbjct: 380 LLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLG 439
Query: 349 SSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFK---SRESFMIYYLRSRQ 405
+ D + ++ Y + EEA I R AS K + + + Y + +
Sbjct: 440 IALDRVSYNTLLSIYTKVGRSEEALDIL-----REMASVGIKKDVVTYNALLGGYGKQGK 494
Query: 406 LDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNC-LDFS 464
D E++ +E K+ H P +T T + + A E + KS D
Sbjct: 495 YD----EVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVV 550
Query: 465 AYSLLIKTYIAAGKLAS 481
YS LI G + S
Sbjct: 551 LYSALIDALCKNGLVGS 567
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 67/325 (20%), Positives = 134/325 (41%), Gaps = 14/325 (4%)
Query: 58 GSVTGALN-AYIMEGKTVRKDMLEYC--VRSLRKFGRYRHALEVIEWMESRKMHFSYTDF 114
G ++ AL + +M+ + V+ ++ Y + K + +A V E M M D
Sbjct: 498 GKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMK---PDV 554
Query: 115 AVYLDLTAKTNGIAAAEKYFNGLSEYAKNRY-----TYGALLNCYCKELMTERALALFEK 169
+Y ++ + G+ ++ + E K R+ T+ +++ Y K R+L +F+
Sbjct: 555 ILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDM 614
Query: 170 MDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLND 229
M + FN L + Q EK ++++M +S + TY MQ Y+ + D
Sbjct: 615 MRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGD 674
Query: 230 IDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMK-PRDRKAYH 288
F + NE D TY L K+ + A K++ PR+ Y+
Sbjct: 675 TGKAFEYFTRLQNEGLD-VDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYN 733
Query: 289 FLISLYCNTSNL-DAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESR 347
LI + ++ +A + + + K P +Y + A +K ++ Q EE E+
Sbjct: 734 ILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEAL 793
Query: 348 CSSYDMRLADVIIRAYLQKDMYEEA 372
+++ +I+ + + + E+A
Sbjct: 794 GVKPNIKTYTTLIKGWARASLPEKA 818
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 131/310 (42%), Gaps = 39/310 (12%)
Query: 47 YKRLSALGATGGS--VTGALNAYIMEGKTVRKDMLE--YCVRSLRKFGRYRHALEVIEWM 102
++R+ A G T S T ++AY V +DM E CVR +++ G
Sbjct: 332 FERMRARGITPTSRIYTSLIHAY-----AVGRDMDEALSCVRKMKEEG------------ 374
Query: 103 ESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAK--NRYTYGALLNCYCKELMT 160
+ S ++V + +K AA+ +F+ K N YG ++ +C+
Sbjct: 375 ----IEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNM 430
Query: 161 ERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVW 220
ERA AL +M+E ++ + Y + +K + ++K+ + +TY
Sbjct: 431 ERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCL 490
Query: 221 MQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKL--EE 278
+ Y+ + I V M E K TYS + + +VK + + A + + E
Sbjct: 491 INLYTKVGKISKALEVSRVMKEEGV-KHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEG 549
Query: 279 MKPRDRKAYHFLISLYCNTSNLD-AVNRVWGILKSTFPPTNTSYLVLLQALAK------- 330
MKP D Y+ +IS +C N+D A+ V + K PT +++ ++ AK
Sbjct: 550 MKP-DVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRS 608
Query: 331 LNAIDILKQC 340
L D++++C
Sbjct: 609 LEVFDMMRRC 618
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 4/150 (2%)
Query: 145 YTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQ 204
+TY ALL CK + ALA+ ++M N+ +N L + R G + L+ Q
Sbjct: 695 FTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQ 754
Query: 205 MKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAE 264
MK+ + D TY ++ + S D++ + EM K TY+ L + +A
Sbjct: 755 MKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEM-EALGVKPNIKTYTTLIKGWARAS 813
Query: 265 LFEKAELALKKLEEM--KPRDRKAYHFLIS 292
L EKA ++++ M KP D+ YH L++
Sbjct: 814 LPEKALSCYEEMKAMGIKP-DKAVYHCLLT 842
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 5/194 (2%)
Query: 140 YAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVR 199
+ N Y + L+N +CKE A +F+++ + V+FN L Y ++G ++
Sbjct: 236 FPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGF 295
Query: 200 PLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNE--CEDKCRWTTYSNLA 257
L +QM++ D TY + + N +DG +F EMC + +TT +
Sbjct: 296 RLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGH 355
Query: 258 SIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAV-NRVWGILKSTFPP 316
S + +L + E K L + D Y+ L++ +C +L A N V G+++ P
Sbjct: 356 SRNGEIDLMK--ESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRP 413
Query: 317 TNTSYLVLLQALAK 330
+Y L+ +
Sbjct: 414 DKITYTTLIDGFCR 427
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 75/372 (20%), Positives = 141/372 (37%), Gaps = 66/372 (17%)
Query: 88 KFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGL--SEYAKNRY 145
K G A +V + + R + + F ++ K + + + + S + +
Sbjct: 252 KEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVF 311
Query: 146 TYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLG------------ 193
TY AL+N CKE + A LF++M + + N V F L + R G
Sbjct: 312 TYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKM 371
Query: 194 -----QPEKV------------------RPLVNQMKQRNISLDNLTYIVWMQSYSHLNDI 230
QP+ V R +V+ M +R + D +TY + + D+
Sbjct: 372 LSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDV 431
Query: 231 DGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKL--EEMKPRDRKAYH 288
+ + EM ++ + +S L K AE AL+++ +KP D Y
Sbjct: 432 ETALEIRKEM-DQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKP-DDVTYT 489
Query: 289 FLISLYCNTSNLDAVNRVWGILKS-TFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESR 347
++ +C + ++ ++S P+ +Y VLL L KL
Sbjct: 490 MMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQ-------------- 535
Query: 348 CSSYDMRLADVIIRAYLQKDMYEEAA---LIFNNAKKRANASARFFKSRESFMIYYLRSR 404
M+ AD+++ A L + + + + AN+S R+ + E ++ L S
Sbjct: 536 -----MKNADMLLDAMLNIGVVPDDITYNTLLEGHHRHANSSKRYIQKPEIGIVADLASY 590
Query: 405 QLDLALNEMEAA 416
+ +NE++ A
Sbjct: 591 K--SIVNELDRA 600
Score = 40.0 bits (92), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 79/191 (41%), Gaps = 10/191 (5%)
Query: 46 LYKRLSALGATGGSVTGALNAYIMEG---KTVRKDMLEYC--VRSLRKFGRYRHALEVIE 100
LY L G + A N I++G + +R D + Y + + G ALE+ +
Sbjct: 382 LYNTLVNGFCKNGDLVAARN--IVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRK 439
Query: 101 WMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGL--SEYAKNRYTYGALLNCYCKEL 158
M+ + F+ + K + AE+ + + + TY +++ +CK+
Sbjct: 440 EMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKG 499
Query: 159 MTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYI 218
+ L ++M + + V +N L +LGQ + L++ M + D++TY
Sbjct: 500 DAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYN 559
Query: 219 VWMQSYS-HLN 228
++ + H N
Sbjct: 560 TLLEGHHRHAN 570
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/307 (21%), Positives = 122/307 (39%), Gaps = 40/307 (13%)
Query: 69 MEGKTVRKDMLEYC--VRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNG 126
M K + ++ Y V K G+ A V+ M + + + F + K +
Sbjct: 415 MRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHR 474
Query: 127 IAAAEKYFNGLSEYA--KNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNN 184
I A + F + + YT+ +L++ C+ + AL L M + NTV +N
Sbjct: 475 IPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNT 534
Query: 185 LSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEM---- 240
L +LR G+ ++ R LVN+M + LD +TY ++ ++D +F +M
Sbjct: 535 LINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDG 594
Query: 241 -------CNECEDK-CR----------------------WTTYSNLASIYVKAELFEKAE 270
CN + CR T+++L + +A E
Sbjct: 595 HAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGL 654
Query: 271 LALKKLE-EMKPRDRKAYHFLISLYCNTSNL-DAVNRVWGILKSTFPPTNTSYLVLLQAL 328
+KL+ E P D ++ L+S C + DA + ++ F P + ++ +LLQ++
Sbjct: 655 TMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSI 714
Query: 329 AKLNAID 335
+D
Sbjct: 715 IPQETLD 721
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 60/298 (20%), Positives = 114/298 (38%), Gaps = 12/298 (4%)
Query: 92 YRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYA--KNRYTYGA 149
++ A V M SRK+ + F V + N I +A ++++ N Y
Sbjct: 198 HKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQT 257
Query: 150 LLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRN 209
L++ K AL L E+M + + + FN++ + + + +VN+M R
Sbjct: 258 LIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRG 317
Query: 210 ISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKA 269
+ D++TY M + +D + +FY + K ++ L +V + A
Sbjct: 318 FAPDDITYGYLMNGLCKIGRVDAAKDLFYRI-----PKPEIVIFNTLIHGFVTHGRLDDA 372
Query: 270 ELALKKLEE---MKPRDRKAYHFLISLYCNTSNLD-AVNRVWGILKSTFPPTNTSYLVLL 325
+ L + + P D Y+ LI Y + A+ + + P SY +L+
Sbjct: 373 KAVLSDMVTSYGIVP-DVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILV 431
Query: 326 QALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRA 383
KL ID E + + + +I A+ ++ EA IF ++
Sbjct: 432 DGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKG 489
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 123/293 (41%), Gaps = 15/293 (5%)
Query: 94 HALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYA--KNRYTYGALL 151
H L ++ M +H + F++ + AK + A F+ + + N TYGA++
Sbjct: 356 HGL--LDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVI 413
Query: 152 NCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNIS 211
CK E A+ FE+M + + +N+L + E+ L+ +M R I
Sbjct: 414 GILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGIC 473
Query: 212 LDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAEL 271
L+ + + + S+ + E++F E+ K TY+ L + Y L K +
Sbjct: 474 LNTIFFNSIIDSHCKEGRVIESEKLF-ELMVRIGVKPNVITYNTLINGYC---LAGKMDE 529
Query: 272 ALKKLEEM-----KPRDRKAYHFLISLYCNTSNL-DAVNRVWGILKSTFPPTNTSYLVLL 325
A+K L M KP + Y LI+ YC S + DA+ + S P +Y ++L
Sbjct: 530 AMKLLSGMVSVGLKP-NTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIIL 588
Query: 326 QALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNN 378
Q L + K+ + + ++ ++I+ + + ++A +F N
Sbjct: 589 QGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQN 641
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/288 (19%), Positives = 113/288 (39%), Gaps = 5/288 (1%)
Query: 83 VRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYA- 141
+ L ++ A E+I M R + + F +D K + +EK F +
Sbjct: 448 IHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGV 507
Query: 142 -KNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRP 200
N TY L+N YC + A+ L M + NTV ++ L Y ++ + E
Sbjct: 508 KPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALV 567
Query: 201 LVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIY 260
L +M+ +S D +TY + +Q + ++ + E + +TY+ +
Sbjct: 568 LFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRI-TESGTQIELSTYNIILHGL 626
Query: 261 VKAELFEKAELALKKLEEMKPR-DRKAYHFLISLYCNTSNLDAVNRVWGILKST-FPPTN 318
K +L + A + L M + + + ++ +I D ++ S P
Sbjct: 627 CKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNY 686
Query: 319 TSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQK 366
+Y ++ + + ++ L Q F E + D + + I+R LQ+
Sbjct: 687 WTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQR 734
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 103/248 (41%), Gaps = 10/248 (4%)
Query: 143 NRYTYGALLNCYCKELMTERALALFEKMDELKFLG---NTVAFNNLSTMYLRLGQPEKVR 199
N ++Y LL C E ++ AL L M + + G + V++ + + + G +K
Sbjct: 157 NVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAY 216
Query: 200 PLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMC-NECEDKCRWTTYSNLAS 258
++M R I D +TY + + +D V M N C TY+++
Sbjct: 217 STYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDC--MTYNSILH 274
Query: 259 IYVKAELFEKAELALKKL--EEMKPRDRKAYHFLISLYCNTSNLDAVNRVW-GILKSTFP 315
Y + ++A LKK+ + ++P D Y L+ C +++ + K
Sbjct: 275 GYCSSGQPKEAIGFLKKMRSDGVEP-DVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLK 333
Query: 316 PTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALI 375
P T+Y LLQ A A+ + + D + ++I AY ++ ++A L+
Sbjct: 334 PEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLV 393
Query: 376 FNNAKKRA 383
F+ +++
Sbjct: 394 FSKMRQQG 401
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 53/263 (20%), Positives = 98/263 (37%), Gaps = 14/263 (5%)
Query: 91 RYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGI---AAAEKYFNGLSE-----YAK 142
R + ALE++ M + S D Y T NG ++K ++ E
Sbjct: 173 RSQEALELLHMMADDRGGGSPPDVVSY---TTVINGFFKEGDSDKAYSTYHEMLDRGILP 229
Query: 143 NRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLV 202
+ TY +++ CK ++A+ + M + + + + +N++ Y GQP++ +
Sbjct: 230 DVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFL 289
Query: 203 NQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIY-V 261
+M+ + D +TY + M ++F M K TTY L Y
Sbjct: 290 KKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGL-KPEITTYGTLLQGYAT 348
Query: 262 KAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILK-STFPPTNTS 320
K L E L + D + LI Y +D V+ ++ P +
Sbjct: 349 KGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVT 408
Query: 321 YLVLLQALAKLNAIDILKQCFEE 343
Y ++ L K ++ FE+
Sbjct: 409 YGAVIGILCKSGRVEDAMLYFEQ 431
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 91/221 (41%), Gaps = 39/221 (17%)
Query: 114 FAVYLDLTAKTNGIAAAEKYFNGL---SEYAKNRYTYGALLNCYCKELMTERALALFEKM 170
F+ L++ A TN K F+G S + ALL Y K+ E A +F++
Sbjct: 497 FSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQ 556
Query: 171 DELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDI 230
E + V++N++ + Y + GQ K + +MK+R + +D +T+I + +H +
Sbjct: 557 RE----KDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLV 612
Query: 231 DGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKA--------------------- 269
+ E+ F M +C+ S + +Y +A EKA
Sbjct: 613 EEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILA 672
Query: 270 -----------ELALKKLEEMKPRDRKAYHFLISLYCNTSN 299
LA +K+ MKP D AY L ++Y + +
Sbjct: 673 ACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGD 713
Score = 41.2 bits (95), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 105/240 (43%), Gaps = 21/240 (8%)
Query: 149 ALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQR 208
AL+ Y K AL LF+ E+ +GN V++ + + +L+ E+ L ++MK++
Sbjct: 335 ALMVAYSKCTAMLDALRLFK---EIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRK 391
Query: 209 NISLDNLTYIVWMQSYSHLNDID---GVERVFYEMCNECEDKCRWTTYSNLASIYVKAEL 265
+ + TY V + + ++ + V + YE + T + L YVK
Sbjct: 392 GVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSS--------TVGTALLDAYVK--- 440
Query: 266 FEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGIL-KSTFPPTNTSYLVL 324
K E A K + +D A+ +++ Y T +A +++G L K P ++ +
Sbjct: 441 LGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSI 500
Query: 325 LQALAKLNAIDILKQCFEEW--ESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKR 382
L A NA + F + +SR S + ++ ++ Y +K E A +F +++
Sbjct: 501 LNVCAATNASMGQGKQFHGFAIKSRLDS-SLCVSSALLTMYAKKGNIESAEEVFKRQREK 559
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 132/332 (39%), Gaps = 22/332 (6%)
Query: 159 MTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQM-KQRNISLDNLTY 217
M +AL++F + K + +N++ M ++ GQ EKV + +M + + D +TY
Sbjct: 177 MVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITY 236
Query: 218 IVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLE 277
+ SY L D R+F EM + C Y+ L IY K K E AL E
Sbjct: 237 SALISSYEKLGRNDSAIRLFDEMKDNCMQPTE-KIYTTLLGIYFKV---GKVEKALDLFE 292
Query: 278 EMKPRD-RKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLV----LLQALAKLN 332
EMK + L V+ +G K T +V L+ L K+
Sbjct: 293 EMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVG 352
Query: 333 AIDILKQCFEE---WESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARF 389
++ L F E W RC+ + VI + K E + F+ K + + + F
Sbjct: 353 RVEELTNVFSEMGMW--RCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEF 410
Query: 390 FKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAE 449
S + Y ++ +++ AL L E + + P + + K + A
Sbjct: 411 TYS--ILIDGYCKTNRVEKAL----LLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAAN 464
Query: 450 EFCKVLK-SLNCLDFSAYSLLIKTYIAAGKLA 480
E K LK + + Y+++IK + GKL+
Sbjct: 465 ELFKELKENFGNVSSRVYAVMIKHFGKCGKLS 496
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 93/214 (43%), Gaps = 3/214 (1%)
Query: 141 AKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRP 200
+ + +TY L++ YCK E+AL L E+MDE F A+ +L + + E
Sbjct: 406 SPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANE 465
Query: 201 LVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIY 260
L ++K+ ++ + Y V ++ + + +F EM N+ + Y+ L S
Sbjct: 466 LFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVY-AYNALMSGM 524
Query: 261 VKAELFEKAELALKKLEEMKPR-DRKAYHFLISLYCNTS-NLDAVNRVWGILKSTFPPTN 318
VKA + +A L+K+EE R D +++ +++ + T A+ I S P
Sbjct: 525 VKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDG 584
Query: 319 TSYLVLLQALAKLNAIDILKQCFEEWESRCSSYD 352
+Y LL A + + E + + YD
Sbjct: 585 VTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYD 618
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 113/278 (40%), Gaps = 39/278 (14%)
Query: 146 TYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQM 205
TY AL++ Y K + A+ LF++M + + L +Y ++G+ EK L +M
Sbjct: 235 TYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEM 294
Query: 206 KQRNISLDNLTYIVWM----------QSYSHLNDI--DGV--ERVFY------------- 238
K+ S TY + ++Y D+ DG+ + VF
Sbjct: 295 KRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRV 354
Query: 239 -EMCNECEDKCRWTTYSNLAS--IYVKAELFEKAELA-------LKKLEEMKPRDRKAYH 288
E+ N + W + S +KA KA ++ K + + P + Y
Sbjct: 355 EELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEF-TYS 413
Query: 289 FLISLYCNTSNLD-AVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESR 347
LI YC T+ ++ A+ + + + FPP +Y L+ AL K + + F+E +
Sbjct: 414 ILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKEN 473
Query: 348 CSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANA 385
+ R+ V+I+ + + EA +FN K + +
Sbjct: 474 FGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSG 511
Score = 33.5 bits (75), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 34/72 (47%)
Query: 146 TYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQM 205
++ +LN + + + RA+ +FE + + V +N L + G E+ ++ +M
Sbjct: 551 SHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREM 610
Query: 206 KQRNISLDNLTY 217
K + D +TY
Sbjct: 611 KDKGFEYDAITY 622
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 167,394,493
Number of Sequences: 539616
Number of extensions: 6703353
Number of successful extensions: 20765
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 162
Number of HSP's that attempted gapping in prelim test: 18876
Number of HSP's gapped (non-prelim): 1239
length of query: 485
length of database: 191,569,459
effective HSP length: 121
effective length of query: 364
effective length of database: 126,275,923
effective search space: 45964435972
effective search space used: 45964435972
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)