Query 048394
Match_columns 485
No_of_seqs 703 out of 2670
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 09:07:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048394.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048394hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 3.3E-62 7.2E-67 488.3 51.5 465 10-482 370-866 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 7.4E-61 1.6E-65 478.6 51.1 453 14-474 410-893 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 7.1E-60 1.5E-64 480.2 46.5 458 10-484 222-712 (857)
4 PLN03077 Protein ECB2; Provisi 100.0 1.9E-58 4.2E-63 469.7 44.0 458 11-484 122-646 (857)
5 PLN03081 pentatricopeptide (PP 100.0 9.7E-59 2.1E-63 461.1 40.8 424 41-484 88-549 (697)
6 PLN03081 pentatricopeptide (PP 100.0 2.7E-57 5.8E-62 450.8 45.5 396 71-484 82-483 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.4E-30 5.3E-35 269.7 50.8 394 75-484 498-892 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 9.4E-30 2E-34 265.3 51.1 392 76-483 465-857 (899)
9 KOG4626 O-linked N-acetylgluco 100.0 1.7E-25 3.8E-30 200.0 31.8 387 76-479 116-506 (966)
10 KOG4626 O-linked N-acetylgluco 100.0 4.3E-25 9.3E-30 197.6 33.8 433 32-484 40-477 (966)
11 PRK11447 cellulose synthase su 99.9 1.9E-22 4.1E-27 211.2 48.9 455 18-484 120-732 (1157)
12 TIGR00990 3a0801s09 mitochondr 99.9 5.4E-22 1.2E-26 195.4 48.6 371 78-460 129-573 (615)
13 TIGR00990 3a0801s09 mitochondr 99.9 1.3E-22 2.7E-27 199.8 43.8 366 114-484 130-563 (615)
14 PRK11447 cellulose synthase su 99.9 4.5E-22 9.8E-27 208.4 48.6 366 83-459 276-741 (1157)
15 PRK15174 Vi polysaccharide exp 99.9 1.6E-21 3.5E-26 191.3 45.6 335 76-420 42-382 (656)
16 PRK11788 tetratricopeptide rep 99.9 1.2E-22 2.6E-27 190.3 35.2 301 119-430 43-354 (389)
17 PRK11788 tetratricopeptide rep 99.9 1.8E-22 3.9E-27 189.1 35.9 296 151-459 42-348 (389)
18 PRK10049 pgaA outer membrane p 99.9 2.7E-21 5.8E-26 193.8 42.2 398 73-483 12-447 (765)
19 PRK15174 Vi polysaccharide exp 99.9 1.1E-20 2.4E-25 185.4 43.9 360 87-461 16-384 (656)
20 PRK10049 pgaA outer membrane p 99.9 8.6E-20 1.9E-24 183.0 44.5 397 57-467 28-465 (765)
21 PRK14574 hmsH outer membrane p 99.9 4.6E-18 9.9E-23 167.4 47.0 416 57-483 47-504 (822)
22 PRK09782 bacteriophage N4 rece 99.9 6.2E-18 1.3E-22 170.0 48.2 394 74-484 179-698 (987)
23 KOG2002 TPR-containing nuclear 99.9 1.2E-17 2.5E-22 158.0 38.1 391 75-476 306-763 (1018)
24 PRK14574 hmsH outer membrane p 99.8 5E-16 1.1E-20 153.2 47.6 398 58-466 82-521 (822)
25 PRK09782 bacteriophage N4 rece 99.8 3.5E-16 7.6E-21 157.5 43.6 381 81-484 318-732 (987)
26 KOG4422 Uncharacterized conser 99.8 4.6E-16 9.9E-21 134.3 37.9 290 86-383 125-463 (625)
27 KOG2003 TPR repeat-containing 99.8 5.1E-17 1.1E-21 141.2 29.0 348 121-478 286-709 (840)
28 KOG0495 HAT repeat protein [RN 99.8 2.7E-15 5.8E-20 136.2 39.5 397 64-478 467-866 (913)
29 KOG0495 HAT repeat protein [RN 99.8 2.2E-14 4.7E-19 130.5 39.6 378 76-472 516-894 (913)
30 KOG2002 TPR-containing nuclear 99.8 3.9E-14 8.5E-19 134.6 42.4 411 60-483 146-584 (1018)
31 KOG1155 Anaphase-promoting com 99.8 2.5E-14 5.5E-19 125.0 37.0 353 108-482 161-526 (559)
32 PF13429 TPR_15: Tetratricopep 99.8 5.5E-18 1.2E-22 150.4 14.1 261 116-381 13-276 (280)
33 KOG4422 Uncharacterized conser 99.8 3.8E-14 8.2E-19 122.7 36.0 241 72-316 203-465 (625)
34 KOG1126 DNA-binding cell divis 99.8 1.5E-16 3.2E-21 145.0 21.8 287 159-461 334-623 (638)
35 KOG0547 Translocase of outer m 99.8 1.8E-14 3.8E-19 126.7 32.5 393 79-484 118-558 (606)
36 PRK10747 putative protoheme IX 99.8 1E-14 2.2E-19 135.4 33.1 283 89-418 97-389 (398)
37 KOG2076 RNA polymerase III tra 99.8 7.1E-14 1.5E-18 131.9 38.5 373 79-457 142-554 (895)
38 KOG2003 TPR repeat-containing 99.7 1.1E-14 2.3E-19 127.0 29.4 345 85-443 285-708 (840)
39 KOG1126 DNA-binding cell divis 99.7 8.9E-16 1.9E-20 140.1 23.6 278 194-484 334-612 (638)
40 PF13429 TPR_15: Tetratricopep 99.7 3.2E-17 6.8E-22 145.5 14.0 252 221-483 15-268 (280)
41 PRK10747 putative protoheme IX 99.7 3.1E-14 6.8E-19 132.1 34.2 284 157-458 97-390 (398)
42 KOG1915 Cell cycle control pro 99.7 4E-13 8.7E-18 117.9 38.3 391 77-482 74-526 (677)
43 KOG1155 Anaphase-promoting com 99.7 7.9E-13 1.7E-17 115.8 39.8 362 83-460 171-538 (559)
44 TIGR00540 hemY_coli hemY prote 99.7 4.7E-14 1E-18 131.7 34.6 120 88-210 96-218 (409)
45 KOG2076 RNA polymerase III tra 99.7 4.4E-14 9.5E-19 133.3 33.5 341 125-483 153-503 (895)
46 TIGR00540 hemY_coli hemY prote 99.7 1.5E-13 3.3E-18 128.3 34.4 288 123-418 96-398 (409)
47 KOG1173 Anaphase-promoting com 99.7 6E-13 1.3E-17 119.4 34.5 404 71-484 44-510 (611)
48 KOG1915 Cell cycle control pro 99.7 1.4E-11 3.1E-16 108.4 40.3 384 77-474 108-551 (677)
49 COG2956 Predicted N-acetylgluc 99.7 4.5E-13 9.7E-18 112.0 29.7 286 124-419 48-347 (389)
50 COG2956 Predicted N-acetylgluc 99.7 4.4E-13 9.6E-18 112.0 29.4 288 157-457 48-346 (389)
51 KOG1173 Anaphase-promoting com 99.7 1.6E-12 3.5E-17 116.8 33.4 286 181-475 246-535 (611)
52 COG3071 HemY Uncharacterized e 99.6 7.6E-12 1.7E-16 108.0 31.4 285 88-381 96-389 (400)
53 COG3071 HemY Uncharacterized e 99.6 1.3E-11 2.8E-16 106.6 32.1 287 156-458 96-390 (400)
54 PRK12370 invasion protein regu 99.6 1.6E-12 3.4E-17 126.2 26.1 149 230-380 320-468 (553)
55 TIGR02521 type_IV_pilW type IV 99.6 4.1E-12 8.8E-17 110.1 26.4 201 250-458 31-232 (234)
56 KOG1129 TPR repeat-containing 99.6 6E-13 1.3E-17 111.4 18.7 230 183-419 227-458 (478)
57 KOG4162 Predicted calmodulin-b 99.6 1.1E-09 2.4E-14 102.4 41.9 366 108-483 320-774 (799)
58 PRK12370 invasion protein regu 99.6 5.1E-12 1.1E-16 122.6 27.5 215 229-457 276-501 (553)
59 PF12569 NARP1: NMDA receptor- 99.6 1.7E-10 3.6E-15 108.4 36.3 283 57-346 17-333 (517)
60 KOG0547 Translocase of outer m 99.5 2.3E-10 4.9E-15 101.4 34.4 385 56-460 127-568 (606)
61 KOG1156 N-terminal acetyltrans 99.5 2.9E-10 6.3E-15 104.1 36.3 429 42-484 6-460 (700)
62 KOG1174 Anaphase-promoting com 99.5 2E-09 4.3E-14 93.6 38.8 318 141-473 191-515 (564)
63 KOG1129 TPR repeat-containing 99.5 1.2E-12 2.6E-17 109.6 18.7 233 218-461 227-461 (478)
64 TIGR02521 type_IV_pilW type IV 99.5 1.3E-11 2.8E-16 106.9 26.4 201 213-419 30-232 (234)
65 KOG3785 Uncharacterized conser 99.5 8.9E-10 1.9E-14 93.8 35.1 359 80-460 61-492 (557)
66 KOG1156 N-terminal acetyltrans 99.5 7.6E-10 1.7E-14 101.5 35.8 394 76-485 75-504 (700)
67 KOG2376 Signal recognition par 99.5 1.4E-09 3E-14 98.8 35.7 413 44-476 13-505 (652)
68 PF12569 NARP1: NMDA receptor- 99.5 7.6E-10 1.6E-14 104.0 34.9 259 83-347 11-291 (517)
69 KOG3785 Uncharacterized conser 99.5 4.4E-10 9.6E-15 95.6 29.4 378 83-482 29-447 (557)
70 KOG1174 Anaphase-promoting com 99.5 1.8E-09 3.9E-14 93.8 32.7 296 176-484 191-492 (564)
71 KOG4318 Bicoid mRNA stability 99.4 5.5E-11 1.2E-15 112.4 24.1 365 62-476 11-392 (1088)
72 PRK11189 lipoprotein NlpI; Pro 99.4 1.9E-10 4E-15 102.4 26.4 242 228-478 40-286 (296)
73 COG3063 PilF Tfp pilus assembl 99.4 2.8E-10 6.2E-15 91.2 24.2 204 253-464 38-242 (250)
74 KOG4318 Bicoid mRNA stability 99.4 2.8E-10 6E-15 107.8 27.6 277 97-409 11-290 (1088)
75 KOG1840 Kinesin light chain [C 99.4 3.8E-10 8.2E-15 104.7 28.1 244 214-457 199-478 (508)
76 COG3063 PilF Tfp pilus assembl 99.4 5.4E-10 1.2E-14 89.6 24.4 198 216-419 37-236 (250)
77 KOG2047 mRNA splicing factor [ 99.4 1.1E-07 2.4E-12 87.6 41.3 281 193-478 361-709 (835)
78 KOG1840 Kinesin light chain [C 99.4 4.6E-10 1E-14 104.1 26.3 239 245-484 194-471 (508)
79 PF13041 PPR_2: PPR repeat fam 99.4 1.1E-12 2.5E-17 81.6 6.2 49 142-190 1-49 (50)
80 KOG2047 mRNA splicing factor [ 99.4 3.5E-08 7.5E-13 90.8 36.8 389 83-483 109-606 (835)
81 PF13041 PPR_2: PPR repeat fam 99.4 1.5E-12 3.3E-17 81.0 5.5 50 177-226 1-50 (50)
82 KOG4162 Predicted calmodulin-b 99.4 2.2E-08 4.9E-13 94.0 34.8 383 68-463 315-788 (799)
83 PRK11189 lipoprotein NlpI; Pro 99.3 4E-10 8.6E-15 100.3 22.5 207 264-484 40-257 (296)
84 KOG2376 Signal recognition par 99.3 1.3E-07 2.9E-12 86.3 37.7 376 56-456 58-518 (652)
85 KOG0624 dsRNA-activated protei 99.3 2.5E-08 5.3E-13 84.8 30.6 216 74-316 36-255 (504)
86 KOG0548 Molecular co-chaperone 99.3 1.3E-08 2.8E-13 91.7 30.0 381 84-475 10-472 (539)
87 cd05804 StaR_like StaR_like; a 99.3 2.5E-08 5.3E-13 92.4 32.9 310 146-459 8-337 (355)
88 KOG4340 Uncharacterized conser 99.3 2.5E-08 5.5E-13 83.1 28.2 23 436-458 421-443 (459)
89 KOG0548 Molecular co-chaperone 99.3 3.3E-09 7.1E-14 95.5 24.0 351 119-484 10-447 (539)
90 cd05804 StaR_like StaR_like; a 99.3 2.6E-08 5.7E-13 92.2 31.2 301 179-484 6-328 (355)
91 KOG1125 TPR repeat-containing 99.2 5.4E-10 1.2E-14 101.3 16.4 227 246-484 284-519 (579)
92 PF04733 Coatomer_E: Coatomer 99.2 5.2E-10 1.1E-14 97.9 15.7 81 300-381 183-264 (290)
93 KOG0624 dsRNA-activated protei 99.2 7E-08 1.5E-12 82.1 26.8 324 116-472 43-384 (504)
94 PF04733 Coatomer_E: Coatomer 99.2 8.7E-10 1.9E-14 96.5 16.0 256 187-464 9-271 (290)
95 PRK04841 transcriptional regul 99.2 1.4E-06 3E-11 91.4 41.2 340 120-461 383-763 (903)
96 KOG1125 TPR repeat-containing 99.1 9.7E-09 2.1E-13 93.3 19.9 222 121-345 295-525 (579)
97 PLN02789 farnesyltranstransfer 99.1 2.6E-07 5.7E-12 82.2 27.7 230 228-468 51-312 (320)
98 KOG3616 Selective LIM binding 99.1 1.9E-07 4.1E-12 87.4 27.4 106 260-376 742-847 (1636)
99 PRK04841 transcriptional regul 99.1 5.9E-07 1.3E-11 94.1 35.0 326 153-484 383-752 (903)
100 KOG4340 Uncharacterized conser 99.1 1.7E-06 3.7E-11 72.5 29.7 295 74-379 8-336 (459)
101 PLN02789 farnesyltranstransfer 99.1 1.2E-07 2.5E-12 84.4 24.6 212 256-476 43-268 (320)
102 KOG1070 rRNA processing protei 99.0 3E-07 6.4E-12 92.0 26.1 201 179-384 1458-1665(1710)
103 PRK15359 type III secretion sy 99.0 4.8E-08 1E-12 76.5 16.2 127 338-476 13-139 (144)
104 PRK14720 transcript cleavage f 99.0 2.2E-07 4.8E-12 91.9 24.1 168 178-382 30-198 (906)
105 KOG1127 TPR repeat-containing 99.0 5.5E-07 1.2E-11 87.2 25.6 377 90-481 472-902 (1238)
106 TIGR03302 OM_YfiO outer membra 99.0 1.9E-07 4.2E-12 80.7 21.1 192 246-460 29-234 (235)
107 KOG1070 rRNA processing protei 99.0 5.4E-07 1.2E-11 90.2 25.9 242 129-375 1443-1693(1710)
108 TIGR03302 OM_YfiO outer membra 99.0 1.9E-07 4.1E-12 80.8 20.9 188 212-419 31-232 (235)
109 KOG3081 Vesicle coat complex C 99.0 3.6E-07 7.9E-12 75.2 20.6 255 187-464 16-277 (299)
110 KOG1914 mRNA cleavage and poly 99.0 2.8E-05 6E-10 70.9 36.3 186 266-460 309-503 (656)
111 PRK10370 formate-dependent nit 99.0 2.3E-07 5E-12 76.9 19.8 156 221-393 23-181 (198)
112 COG5010 TadD Flp pilus assembl 99.0 1.1E-07 2.4E-12 78.3 17.4 158 218-378 70-227 (257)
113 KOG0985 Vesicle coat protein c 99.0 1.2E-05 2.7E-10 78.3 33.3 330 64-442 970-1326(1666)
114 COG5010 TadD Flp pilus assembl 98.9 1.9E-07 4E-12 77.0 18.2 179 269-457 52-230 (257)
115 KOG1127 TPR repeat-containing 98.9 2.2E-06 4.8E-11 83.2 27.5 213 267-483 800-1027(1238)
116 PRK15179 Vi polysaccharide bio 98.9 1E-06 2.3E-11 86.4 26.0 136 246-382 82-217 (694)
117 KOG3617 WD40 and TPR repeat-co 98.9 3.2E-06 6.9E-11 80.5 27.7 164 122-310 811-993 (1416)
118 KOG1128 Uncharacterized conser 98.9 5.9E-08 1.3E-12 90.8 16.3 215 245-483 393-607 (777)
119 KOG1128 Uncharacterized conser 98.9 1.1E-07 2.3E-12 89.0 17.9 214 115-346 402-615 (777)
120 PRK15179 Vi polysaccharide bio 98.9 1E-06 2.3E-11 86.4 25.6 195 220-436 34-229 (694)
121 KOG1914 mRNA cleavage and poly 98.9 4.5E-05 9.8E-10 69.5 32.9 403 71-483 15-492 (656)
122 KOG3060 Uncharacterized conser 98.9 2.8E-06 6.1E-11 69.6 22.6 191 226-420 24-221 (289)
123 PRK10370 formate-dependent nit 98.9 7.9E-07 1.7E-11 73.7 19.7 119 297-419 52-173 (198)
124 KOG3616 Selective LIM binding 98.9 6.2E-06 1.3E-10 77.6 27.1 268 151-460 739-1026(1636)
125 COG4783 Putative Zn-dependent 98.8 4.5E-06 9.7E-11 75.1 24.2 142 222-383 314-455 (484)
126 PRK14720 transcript cleavage f 98.8 5.3E-06 1.2E-10 82.4 26.5 168 143-347 30-198 (906)
127 KOG0985 Vesicle coat protein c 98.8 6E-05 1.3E-09 73.8 32.1 312 86-457 1058-1369(1666)
128 KOG3617 WD40 and TPR repeat-co 98.8 8E-05 1.7E-09 71.4 32.2 91 79-172 829-940 (1416)
129 COG4783 Putative Zn-dependent 98.8 2.2E-05 4.9E-10 70.8 26.3 207 126-356 252-462 (484)
130 PRK15359 type III secretion sy 98.7 5.6E-07 1.2E-11 70.5 14.4 103 219-323 29-131 (144)
131 PF12854 PPR_1: PPR repeat 98.7 2.3E-08 5.1E-13 55.6 3.9 32 209-240 2-33 (34)
132 KOG3060 Uncharacterized conser 98.7 4.5E-05 9.7E-10 62.8 23.5 190 191-383 24-221 (289)
133 TIGR02552 LcrH_SycD type III s 98.7 1.3E-06 2.9E-11 68.1 14.7 115 341-464 6-120 (135)
134 PF12854 PPR_1: PPR repeat 98.7 4.9E-08 1.1E-12 54.3 4.2 32 106-137 2-33 (34)
135 TIGR02552 LcrH_SycD type III s 98.6 1.8E-06 3.9E-11 67.3 14.5 94 287-381 20-113 (135)
136 KOG3081 Vesicle coat complex C 98.6 2.1E-05 4.5E-10 65.2 20.2 151 186-346 115-270 (299)
137 KOG2053 Mitochondrial inherita 98.6 0.00077 1.7E-08 65.6 38.5 203 79-283 44-259 (932)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 1.6E-06 3.5E-11 78.7 14.6 123 322-456 173-295 (395)
139 KOG2053 Mitochondrial inherita 98.5 0.0015 3.1E-08 63.8 31.6 221 156-383 21-256 (932)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.9E-05 4E-10 71.9 16.4 124 183-312 173-296 (395)
141 PF09976 TPR_21: Tetratricopep 98.4 1.9E-05 4.2E-10 62.1 14.6 116 297-416 24-144 (145)
142 KOG0553 TPR repeat-containing 98.4 2.9E-05 6.2E-10 65.7 15.4 110 363-480 91-200 (304)
143 TIGR02795 tol_pal_ybgF tol-pal 98.3 2.2E-05 4.8E-10 59.5 13.5 112 355-468 4-115 (119)
144 KOG0550 Molecular chaperone (D 98.3 0.00042 9.2E-09 61.3 20.9 88 329-419 260-350 (486)
145 TIGR00756 PPR pentatricopeptid 98.3 1.5E-06 3.3E-11 49.2 4.2 33 146-178 2-34 (35)
146 PF09976 TPR_21: Tetratricopep 98.3 8.1E-05 1.8E-09 58.6 15.2 114 263-378 24-143 (145)
147 KOG0550 Molecular chaperone (D 98.2 5.5E-05 1.2E-09 66.7 14.8 266 185-459 55-351 (486)
148 PLN03088 SGT1, suppressor of 98.2 5.9E-05 1.3E-09 69.0 15.4 102 363-472 12-113 (356)
149 cd00189 TPR Tetratricopeptide 98.2 4.6E-05 1E-09 54.9 11.6 88 221-310 7-94 (100)
150 PRK15363 pathogenicity island 98.2 4.7E-05 1E-09 58.7 11.5 96 356-459 38-133 (157)
151 TIGR00756 PPR pentatricopeptid 98.2 2.7E-06 5.9E-11 48.1 3.6 33 181-213 2-34 (35)
152 cd00189 TPR Tetratricopeptide 98.2 4.3E-05 9.4E-10 55.0 11.1 93 254-346 4-96 (100)
153 PF13812 PPR_3: Pentatricopept 98.2 3.5E-06 7.6E-11 47.3 3.9 32 146-177 3-34 (34)
154 PF12895 Apc3: Anaphase-promot 98.2 4.8E-06 1E-10 58.5 5.5 79 366-454 2-83 (84)
155 TIGR02795 tol_pal_ybgF tol-pal 98.2 0.0001 2.2E-09 55.8 13.3 60 256-315 45-107 (119)
156 PF14938 SNAP: Soluble NSF att 98.1 0.0004 8.8E-09 61.5 18.7 147 322-469 118-274 (282)
157 PF13812 PPR_3: Pentatricopept 98.1 3.8E-06 8.3E-11 47.1 3.6 33 180-212 2-34 (34)
158 PRK10866 outer membrane biogen 98.1 0.0014 3E-08 56.4 20.6 179 255-456 37-239 (243)
159 PF05843 Suf: Suppressor of fo 98.1 0.00016 3.4E-09 63.8 15.1 131 285-419 2-136 (280)
160 PRK02603 photosystem I assembl 98.1 0.00027 5.9E-09 57.5 15.3 114 355-478 37-166 (172)
161 PRK15363 pathogenicity island 98.1 9.4E-05 2E-09 57.1 11.6 94 254-347 39-132 (157)
162 PF14559 TPR_19: Tetratricopep 98.1 2.2E-05 4.8E-10 52.5 7.1 66 401-471 2-67 (68)
163 PRK10866 outer membrane biogen 98.0 0.0018 3.9E-08 55.6 20.0 176 283-483 31-232 (243)
164 PF10037 MRP-S27: Mitochondria 98.0 7.5E-05 1.6E-09 68.4 12.1 120 108-227 63-186 (429)
165 PF05843 Suf: Suppressor of fo 98.0 0.00036 7.9E-09 61.5 16.1 145 251-400 2-150 (280)
166 KOG2280 Vacuolar assembly/sort 98.0 0.017 3.6E-07 55.6 31.1 402 41-484 336-791 (829)
167 PF13432 TPR_16: Tetratricopep 98.0 3.9E-05 8.6E-10 50.7 7.1 63 396-463 3-65 (65)
168 PLN03088 SGT1, suppressor of 98.0 0.00027 5.9E-09 64.7 14.9 94 189-285 12-105 (356)
169 PF12895 Apc3: Anaphase-promot 98.0 2.6E-05 5.6E-10 54.7 6.4 80 228-308 3-82 (84)
170 PF08579 RPM2: Mitochondrial r 98.0 0.00012 2.5E-09 52.4 9.5 80 147-226 28-116 (120)
171 PF14938 SNAP: Soluble NSF att 98.0 0.0023 5E-08 56.7 20.2 92 187-279 122-225 (282)
172 COG4235 Cytochrome c biogenesi 97.9 0.00082 1.8E-08 57.5 15.6 103 279-382 151-256 (287)
173 COG5107 RNA14 Pre-mRNA 3'-end 97.9 0.015 3.2E-07 52.6 34.0 377 71-461 37-534 (660)
174 PF13414 TPR_11: TPR repeat; P 97.9 9.5E-05 2.1E-09 49.5 8.1 66 390-460 3-69 (69)
175 PRK10153 DNA-binding transcrip 97.9 0.00068 1.5E-08 65.0 16.4 137 279-419 332-482 (517)
176 PF01535 PPR: PPR repeat; Int 97.9 1.8E-05 3.8E-10 43.2 3.5 29 146-174 2-30 (31)
177 PRK02603 photosystem I assembl 97.9 0.00082 1.8E-08 54.7 14.7 81 253-333 38-121 (172)
178 PF13525 YfiO: Outer membrane 97.9 0.0024 5.3E-08 53.4 17.8 61 256-316 11-74 (203)
179 CHL00033 ycf3 photosystem I as 97.9 0.00079 1.7E-08 54.6 14.5 102 353-461 35-152 (168)
180 PRK10153 DNA-binding transcrip 97.9 0.0012 2.6E-08 63.3 17.8 142 314-464 333-488 (517)
181 PF13525 YfiO: Outer membrane 97.9 0.0048 1E-07 51.7 19.4 56 292-347 13-71 (203)
182 PF10037 MRP-S27: Mitochondria 97.9 0.00035 7.6E-09 64.1 13.2 123 279-403 61-186 (429)
183 PF06239 ECSIT: Evolutionarily 97.9 0.0003 6.5E-09 57.0 11.2 61 131-191 34-99 (228)
184 PF04840 Vps16_C: Vps16, C-ter 97.9 0.013 2.8E-07 52.4 22.6 279 113-454 2-287 (319)
185 CHL00033 ycf3 photosystem I as 97.9 0.00044 9.5E-09 56.1 12.5 26 253-278 75-100 (168)
186 KOG1130 Predicted G-alpha GTPa 97.8 0.00022 4.7E-09 63.0 10.9 282 188-484 26-336 (639)
187 COG3898 Uncharacterized membra 97.8 0.021 4.5E-07 50.7 29.3 216 226-457 166-391 (531)
188 PRK10803 tol-pal system protei 97.8 0.00064 1.4E-08 58.8 13.4 106 354-465 144-253 (263)
189 KOG0553 TPR repeat-containing 97.8 0.0004 8.6E-09 59.1 11.6 93 224-318 91-183 (304)
190 PF01535 PPR: PPR repeat; Int 97.8 2.3E-05 5.1E-10 42.7 2.9 29 181-209 2-30 (31)
191 PF08579 RPM2: Mitochondrial r 97.8 0.00048 1E-08 49.3 9.9 79 322-402 29-116 (120)
192 COG3898 Uncharacterized membra 97.8 0.023 5.1E-07 50.4 28.1 282 123-420 96-393 (531)
193 PF13432 TPR_16: Tetratricopep 97.8 0.00015 3.3E-09 47.8 7.1 57 258-314 5-61 (65)
194 KOG2041 WD40 repeat protein [G 97.7 0.036 7.9E-07 53.0 23.9 253 127-420 679-953 (1189)
195 PF13414 TPR_11: TPR repeat; P 97.7 0.00024 5.1E-09 47.6 7.3 62 251-312 4-66 (69)
196 COG4235 Cytochrome c biogenesi 97.7 0.003 6.6E-08 54.1 15.1 105 245-349 151-258 (287)
197 PF14559 TPR_19: Tetratricopep 97.7 0.00022 4.8E-09 47.6 6.9 55 262-316 3-57 (68)
198 PF07079 DUF1347: Protein of u 97.7 0.045 9.7E-07 49.7 35.8 49 401-455 473-521 (549)
199 KOG2280 Vacuolar assembly/sort 97.6 0.078 1.7E-06 51.3 26.5 139 69-208 425-575 (829)
200 PF12688 TPR_5: Tetratrico pep 97.6 0.001 2.3E-08 49.5 9.9 104 359-473 7-116 (120)
201 PF12688 TPR_5: Tetratrico pep 97.6 0.0048 1E-07 46.0 13.3 108 79-190 4-117 (120)
202 KOG2041 WD40 repeat protein [G 97.6 0.086 1.9E-06 50.6 29.4 122 73-204 689-821 (1189)
203 PF13371 TPR_9: Tetratricopept 97.6 0.00067 1.5E-08 46.0 8.0 66 398-468 3-68 (73)
204 COG4700 Uncharacterized protei 97.5 0.031 6.8E-07 44.3 18.1 130 283-418 88-221 (251)
205 KOG1130 Predicted G-alpha GTPa 97.5 0.0051 1.1E-07 54.7 14.3 135 284-420 195-345 (639)
206 PRK10803 tol-pal system protei 97.5 0.0027 5.9E-08 55.0 12.7 98 217-316 146-249 (263)
207 COG4700 Uncharacterized protei 97.5 0.033 7.1E-07 44.1 18.7 124 248-373 87-213 (251)
208 PF13281 DUF4071: Domain of un 97.4 0.043 9.4E-07 49.6 19.8 35 427-461 303-337 (374)
209 PF13431 TPR_17: Tetratricopep 97.4 0.00015 3.3E-09 40.2 2.7 33 452-484 2-34 (34)
210 COG4105 ComL DNA uptake lipopr 97.4 0.063 1.4E-06 45.3 20.4 181 260-463 44-238 (254)
211 PF13428 TPR_14: Tetratricopep 97.3 0.00053 1.2E-08 40.9 4.7 42 430-471 2-43 (44)
212 KOG1538 Uncharacterized conser 97.3 0.1 2.3E-06 49.6 20.9 100 78-204 558-657 (1081)
213 COG5107 RNA14 Pre-mRNA 3'-end 97.3 0.14 3.1E-06 46.6 30.8 371 97-482 30-521 (660)
214 PF13371 TPR_9: Tetratricopept 97.3 0.0019 4.2E-08 43.7 7.4 58 259-316 4-61 (73)
215 PRK15331 chaperone protein Sic 97.3 0.0028 6E-08 49.4 8.8 96 359-463 43-138 (165)
216 KOG2796 Uncharacterized conser 97.2 0.11 2.5E-06 43.7 23.5 133 216-349 179-317 (366)
217 KOG2796 Uncharacterized conser 97.1 0.12 2.6E-06 43.5 22.3 136 181-316 179-318 (366)
218 PF03704 BTAD: Bacterial trans 97.1 0.026 5.6E-07 44.4 13.7 56 289-344 67-122 (146)
219 PF13424 TPR_12: Tetratricopep 97.1 0.0026 5.6E-08 43.7 7.0 67 391-457 6-74 (78)
220 PF13281 DUF4071: Domain of un 97.1 0.19 4.1E-06 45.6 20.1 77 114-190 144-228 (374)
221 PRK15331 chaperone protein Sic 97.1 0.0092 2E-07 46.6 10.1 86 261-346 48-133 (165)
222 COG0457 NrfG FOG: TPR repeat [ 97.1 0.17 3.6E-06 43.4 29.2 204 250-461 59-268 (291)
223 KOG1258 mRNA processing protei 97.0 0.32 6.9E-06 46.2 29.9 85 87-172 90-179 (577)
224 PF04840 Vps16_C: Vps16, C-ter 96.9 0.29 6.3E-06 44.0 28.0 281 78-416 2-288 (319)
225 PF06239 ECSIT: Evolutionarily 96.9 0.01 2.2E-07 48.5 9.2 36 368-405 118-153 (228)
226 KOG1941 Acetylcholine receptor 96.9 0.05 1.1E-06 47.9 13.7 233 225-457 17-274 (518)
227 KOG0543 FKBP-type peptidyl-pro 96.9 0.024 5.1E-07 50.8 11.9 109 222-330 216-337 (397)
228 PF13512 TPR_18: Tetratricopep 96.8 0.051 1.1E-06 41.5 12.0 68 261-328 21-92 (142)
229 PF13424 TPR_12: Tetratricopep 96.8 0.0069 1.5E-07 41.6 6.8 67 353-419 5-75 (78)
230 COG3118 Thioredoxin domain-con 96.8 0.31 6.6E-06 42.1 17.9 145 153-301 143-289 (304)
231 KOG0543 FKBP-type peptidyl-pro 96.8 0.017 3.7E-07 51.7 10.4 76 393-473 260-335 (397)
232 COG1729 Uncharacterized protei 96.8 0.048 1E-06 46.4 12.6 61 256-316 184-247 (262)
233 COG1729 Uncharacterized protei 96.8 0.082 1.8E-06 45.0 14.0 110 355-467 144-253 (262)
234 KOG1585 Protein required for f 96.7 0.27 5.9E-06 41.0 17.2 202 113-340 33-249 (308)
235 COG4105 ComL DNA uptake lipopr 96.7 0.3 6.5E-06 41.3 19.2 51 123-173 46-100 (254)
236 COG0457 NrfG FOG: TPR repeat [ 96.7 0.32 6.9E-06 41.6 27.0 211 263-483 36-256 (291)
237 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.068 1.5E-06 49.2 14.1 69 245-313 70-141 (453)
238 PF08631 SPO22: Meiosis protei 96.7 0.4 8.6E-06 42.5 25.5 165 285-456 85-273 (278)
239 PF10300 DUF3808: Protein of u 96.7 0.2 4.3E-06 48.0 17.9 179 234-420 177-377 (468)
240 PF02259 FAT: FAT domain; Int 96.6 0.57 1.2E-05 43.2 23.3 125 352-476 145-305 (352)
241 PF10300 DUF3808: Protein of u 96.6 0.21 4.6E-06 47.8 17.4 163 218-381 192-375 (468)
242 COG4785 NlpI Lipoprotein NlpI, 96.6 0.31 6.8E-06 39.9 15.8 82 265-346 80-161 (297)
243 KOG1538 Uncharacterized conser 96.6 0.4 8.8E-06 45.9 18.3 218 79-311 601-844 (1081)
244 KOG1585 Protein required for f 96.6 0.35 7.7E-06 40.4 16.8 210 216-452 33-250 (308)
245 PF03704 BTAD: Bacterial trans 96.6 0.081 1.8E-06 41.6 12.4 61 252-312 64-124 (146)
246 PRK11906 transcriptional regul 96.6 0.27 5.9E-06 45.5 16.8 148 230-378 274-432 (458)
247 KOG3941 Intermediate in Toll s 96.5 0.023 5E-07 48.1 9.1 100 131-230 54-174 (406)
248 PF04053 Coatomer_WDAD: Coatom 96.5 0.074 1.6E-06 50.1 13.6 152 58-240 275-428 (443)
249 PF12921 ATP13: Mitochondrial 96.5 0.036 7.8E-07 41.9 9.4 49 210-258 48-96 (126)
250 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.081 1.8E-06 48.7 13.2 67 211-279 72-141 (453)
251 PF08631 SPO22: Meiosis protei 96.5 0.57 1.2E-05 41.5 26.0 165 251-418 85-274 (278)
252 PRK11906 transcriptional regul 96.4 0.41 8.9E-06 44.4 17.2 146 265-416 273-433 (458)
253 COG4785 NlpI Lipoprotein NlpI, 96.4 0.37 8E-06 39.5 14.9 78 130-208 84-162 (297)
254 smart00299 CLH Clathrin heavy 96.4 0.3 6.6E-06 38.0 14.7 125 148-295 11-136 (140)
255 KOG1920 IkappaB kinase complex 96.4 1.4 3.1E-05 45.6 23.3 25 77-101 678-702 (1265)
256 PF07079 DUF1347: Protein of u 96.4 0.76 1.7E-05 42.2 38.2 195 284-483 298-515 (549)
257 PF12921 ATP13: Mitochondrial 96.4 0.1 2.2E-06 39.4 11.0 52 387-441 49-100 (126)
258 PF04184 ST7: ST7 protein; In 96.3 0.41 8.9E-06 44.5 16.5 150 256-418 174-323 (539)
259 KOG4555 TPR repeat-containing 96.2 0.13 2.9E-06 38.1 10.5 93 362-461 52-147 (175)
260 KOG1941 Acetylcholine receptor 96.2 0.81 1.8E-05 40.7 19.6 55 325-379 213-272 (518)
261 KOG2610 Uncharacterized conser 96.2 0.25 5.3E-06 43.3 13.5 117 156-276 115-235 (491)
262 KOG4555 TPR repeat-containing 96.2 0.18 4E-06 37.4 10.9 87 261-347 54-144 (175)
263 PF13428 TPR_14: Tetratricopep 96.1 0.018 3.9E-07 34.1 4.8 39 253-291 4-42 (44)
264 KOG2114 Vacuolar assembly/sort 96.1 1.7 3.7E-05 43.2 21.4 15 191-205 502-516 (933)
265 COG3118 Thioredoxin domain-con 96.1 0.83 1.8E-05 39.6 18.7 146 257-405 141-287 (304)
266 PF04053 Coatomer_WDAD: Coatom 95.8 0.57 1.2E-05 44.3 15.6 129 217-377 298-426 (443)
267 PF04184 ST7: ST7 protein; In 95.8 0.74 1.6E-05 42.9 15.6 61 218-278 263-323 (539)
268 PF13512 TPR_18: Tetratricopep 95.7 0.4 8.8E-06 36.7 11.5 55 294-348 20-77 (142)
269 PF09205 DUF1955: Domain of un 95.7 0.62 1.3E-05 34.9 13.6 60 324-384 92-151 (161)
270 smart00299 CLH Clathrin heavy 95.6 0.76 1.7E-05 35.7 14.9 126 79-225 10-136 (140)
271 KOG4234 TPR repeat-containing 95.6 0.18 4E-06 40.6 9.5 98 363-469 105-208 (271)
272 COG4649 Uncharacterized protei 95.4 1 2.2E-05 35.6 14.0 130 143-278 58-195 (221)
273 KOG1258 mRNA processing protei 95.4 2.7 5.8E-05 40.3 33.6 364 56-443 91-489 (577)
274 COG4649 Uncharacterized protei 95.4 1 2.3E-05 35.5 13.4 122 225-346 69-195 (221)
275 PF13170 DUF4003: Protein of u 95.2 0.76 1.7E-05 40.8 13.5 129 92-222 78-225 (297)
276 KOG3941 Intermediate in Toll s 95.2 0.36 7.9E-06 41.2 10.5 101 89-206 85-186 (406)
277 KOG1464 COP9 signalosome, subu 95.1 1.8 4E-05 36.9 21.8 209 173-382 20-261 (440)
278 PF10345 Cohesin_load: Cohesin 95.1 4.2 9E-05 40.8 35.4 404 77-483 60-597 (608)
279 COG3629 DnrI DNA-binding trans 95.1 0.37 8.1E-06 41.8 10.7 83 353-438 153-236 (280)
280 KOG1920 IkappaB kinase complex 95.1 5.2 0.00011 41.8 29.0 136 263-419 893-1028(1265)
281 KOG2396 HAT (Half-A-TPR) repea 95.1 3 6.6E-05 39.0 34.6 89 387-480 456-547 (568)
282 KOG4234 TPR repeat-containing 94.9 0.1 2.2E-06 42.0 6.3 81 399-484 104-189 (271)
283 PF09613 HrpB1_HrpK: Bacterial 94.8 1.5 3.2E-05 34.4 13.5 112 326-450 18-130 (160)
284 PF09613 HrpB1_HrpK: Bacterial 94.8 1.5 3.3E-05 34.4 13.7 58 260-317 20-77 (160)
285 PF07719 TPR_2: Tetratricopept 94.8 0.091 2E-06 28.8 4.4 31 431-461 3-33 (34)
286 KOG4648 Uncharacterized conser 94.7 0.28 6E-06 43.1 9.0 93 363-464 107-200 (536)
287 PF00515 TPR_1: Tetratricopept 94.5 0.089 1.9E-06 28.9 3.8 31 431-461 3-33 (34)
288 KOG2114 Vacuolar assembly/sort 94.4 6.3 0.00014 39.5 25.9 180 75-275 333-515 (933)
289 KOG2610 Uncharacterized conser 94.3 3.6 7.8E-05 36.4 18.4 150 227-378 116-272 (491)
290 PF13431 TPR_17: Tetratricopep 94.2 0.074 1.6E-06 29.4 3.1 31 274-304 3-33 (34)
291 PRK15180 Vi polysaccharide bio 94.1 3.2 7E-05 38.6 14.6 88 293-381 332-419 (831)
292 PF09205 DUF1955: Domain of un 94.0 1.9 4.2E-05 32.4 13.8 62 356-420 89-150 (161)
293 COG3629 DnrI DNA-binding trans 94.0 0.71 1.5E-05 40.1 10.0 78 285-362 154-236 (280)
294 PF13170 DUF4003: Protein of u 94.0 3.6 7.8E-05 36.6 14.7 126 232-360 80-224 (297)
295 cd00923 Cyt_c_Oxidase_Va Cytoc 93.7 0.55 1.2E-05 32.9 7.0 63 405-471 22-84 (103)
296 PF10602 RPN7: 26S proteasome 93.5 2.5 5.3E-05 34.4 11.9 100 319-418 37-141 (177)
297 KOG1550 Extracellular protein 93.5 8.5 0.00018 38.1 21.8 187 195-384 228-428 (552)
298 COG1747 Uncharacterized N-term 93.4 7.1 0.00015 36.8 24.8 163 178-348 65-235 (711)
299 PF10602 RPN7: 26S proteasome 93.3 1.4 3.1E-05 35.7 10.3 60 252-311 38-100 (177)
300 PF04097 Nic96: Nup93/Nic96; 93.2 10 0.00022 38.0 22.5 49 75-124 110-158 (613)
301 KOG0890 Protein kinase of the 93.1 19 0.00042 41.0 24.1 150 149-308 1388-1542(2382)
302 KOG0890 Protein kinase of the 93.1 19 0.00042 41.0 30.0 149 81-238 1388-1542(2382)
303 PF02259 FAT: FAT domain; Int 93.0 7.2 0.00016 35.9 26.7 65 283-347 145-213 (352)
304 PF13176 TPR_7: Tetratricopept 92.9 0.29 6.2E-06 27.4 4.1 25 393-417 2-26 (36)
305 PRK15180 Vi polysaccharide bio 92.8 4.5 9.8E-05 37.7 13.4 131 218-350 293-423 (831)
306 PF13176 TPR_7: Tetratricopept 92.7 0.25 5.3E-06 27.7 3.6 27 431-457 1-27 (36)
307 COG2976 Uncharacterized protei 92.6 4.8 0.0001 32.8 13.3 90 359-459 95-189 (207)
308 PF02284 COX5A: Cytochrome c o 92.6 0.65 1.4E-05 32.9 6.1 60 408-471 28-87 (108)
309 KOG0276 Vesicle coat complex C 92.5 3.7 7.9E-05 39.4 12.7 131 78-239 616-746 (794)
310 PF07035 Mic1: Colon cancer-as 92.4 4.6 0.0001 32.2 14.7 27 168-194 18-44 (167)
311 PF13181 TPR_8: Tetratricopept 92.1 0.34 7.5E-06 26.4 3.8 30 431-460 3-32 (34)
312 cd00923 Cyt_c_Oxidase_Va Cytoc 92.0 1.1 2.4E-05 31.4 6.7 46 197-242 25-70 (103)
313 PRK11619 lytic murein transgly 92.0 15 0.00032 37.0 30.4 117 296-417 253-373 (644)
314 PRK11619 lytic murein transgly 91.8 16 0.00034 36.9 26.2 323 111-457 34-374 (644)
315 PF00637 Clathrin: Region in C 91.5 0.0054 1.2E-07 48.1 -5.8 53 186-238 14-66 (143)
316 KOG4648 Uncharacterized conser 91.4 0.27 5.9E-06 43.1 4.0 81 398-483 105-185 (536)
317 PF08424 NRDE-2: NRDE-2, neces 91.3 11 0.00024 34.2 17.8 119 301-420 48-184 (321)
318 PF07719 TPR_2: Tetratricopept 91.2 0.82 1.8E-05 24.8 4.7 29 253-281 4-32 (34)
319 PF00515 TPR_1: Tetratricopept 91.2 0.58 1.3E-05 25.5 4.1 29 252-280 3-31 (34)
320 TIGR02561 HrpB1_HrpK type III 91.2 5.8 0.00013 30.7 12.9 55 262-316 22-76 (153)
321 PF02284 COX5A: Cytochrome c o 91.2 1 2.2E-05 32.0 5.8 46 197-242 28-73 (108)
322 COG1747 Uncharacterized N-term 91.1 14 0.0003 35.0 23.9 181 140-329 62-250 (711)
323 KOG1586 Protein required for f 91.1 8.4 0.00018 32.4 21.2 87 332-420 128-225 (288)
324 PF13174 TPR_6: Tetratricopept 91.0 0.47 1E-05 25.5 3.6 25 436-460 7-31 (33)
325 KOG4570 Uncharacterized conser 90.9 6.2 0.00013 34.7 11.5 99 283-382 63-164 (418)
326 KOG2471 TPR repeat-containing 90.7 15 0.00032 34.6 15.7 108 327-442 249-382 (696)
327 COG3947 Response regulator con 90.5 11 0.00024 32.8 15.4 61 285-345 280-340 (361)
328 TIGR02561 HrpB1_HrpK type III 89.9 7.7 0.00017 30.1 11.9 18 156-173 56-73 (153)
329 KOG4570 Uncharacterized conser 89.9 5.6 0.00012 35.0 10.3 99 317-419 63-164 (418)
330 KOG1550 Extracellular protein 89.7 23 0.00049 35.1 22.0 180 127-316 228-429 (552)
331 PF06552 TOM20_plant: Plant sp 89.5 6 0.00013 31.8 9.5 41 369-419 96-136 (186)
332 COG2909 MalT ATP-dependent tra 89.3 28 0.0006 35.6 29.9 228 224-454 425-684 (894)
333 PF08424 NRDE-2: NRDE-2, neces 89.3 17 0.00036 33.1 16.7 119 266-384 47-185 (321)
334 KOG2063 Vacuolar assembly/sort 89.1 31 0.00066 35.8 20.7 113 253-365 507-638 (877)
335 KOG1586 Protein required for f 88.9 13 0.00028 31.3 20.9 15 124-138 27-41 (288)
336 COG2976 Uncharacterized protei 88.9 11 0.00025 30.7 14.0 115 302-420 70-189 (207)
337 KOG4507 Uncharacterized conser 88.9 2.4 5.3E-05 40.4 8.1 104 365-475 619-722 (886)
338 PF11207 DUF2989: Protein of u 88.8 5.1 0.00011 32.9 9.0 73 196-269 123-197 (203)
339 PF07035 Mic1: Colon cancer-as 88.6 11 0.00024 30.1 15.0 131 63-206 16-147 (167)
340 KOG0276 Vesicle coat complex C 88.3 13 0.00027 36.1 12.2 26 284-309 666-691 (794)
341 PF04097 Nic96: Nup93/Nic96; 88.1 31 0.00067 34.7 22.9 87 256-346 264-355 (613)
342 KOG4642 Chaperone-dependent E3 87.8 16 0.00034 31.0 11.2 37 401-437 89-125 (284)
343 PF11207 DUF2989: Protein of u 87.7 7.7 0.00017 31.9 9.3 73 126-199 121-198 (203)
344 PF00637 Clathrin: Region in C 87.6 0.13 2.9E-06 40.1 -0.5 82 325-415 14-95 (143)
345 PF13374 TPR_10: Tetratricopep 87.5 1.7 3.6E-05 24.9 4.4 26 355-380 4-29 (42)
346 KOG4507 Uncharacterized conser 87.3 4.3 9.3E-05 38.9 8.7 117 245-362 602-719 (886)
347 PF13181 TPR_8: Tetratricopept 87.1 1.6 3.4E-05 23.7 3.9 27 252-278 3-29 (34)
348 COG4455 ImpE Protein of avirul 86.9 5.5 0.00012 33.0 8.0 78 355-438 3-81 (273)
349 PF13374 TPR_10: Tetratricopep 86.9 1.8 4E-05 24.7 4.3 27 145-171 3-29 (42)
350 PF13174 TPR_6: Tetratricopept 86.7 1.7 3.6E-05 23.3 3.8 21 399-419 9-29 (33)
351 COG3947 Response regulator con 86.2 23 0.00049 31.1 16.7 42 231-275 150-191 (361)
352 KOG4642 Chaperone-dependent E3 86.1 17 0.00036 30.8 10.5 86 223-311 19-105 (284)
353 TIGR02508 type_III_yscG type I 86.1 10 0.00022 27.0 7.9 80 90-174 19-98 (115)
354 KOG0403 Neoplastic transformat 85.8 30 0.00066 32.3 19.6 57 394-455 513-569 (645)
355 smart00386 HAT HAT (Half-A-TPR 85.3 2.2 4.9E-05 22.6 3.9 30 443-472 1-30 (33)
356 PRK10941 hypothetical protein; 85.1 9.4 0.0002 33.4 9.3 67 394-465 185-251 (269)
357 PF06552 TOM20_plant: Plant sp 84.8 19 0.00041 29.1 11.2 31 405-441 95-125 (186)
358 PF14853 Fis1_TPR_C: Fis1 C-te 84.7 4.3 9.3E-05 25.1 5.1 32 435-466 7-38 (53)
359 smart00028 TPR Tetratricopepti 84.3 2 4.2E-05 22.3 3.4 29 432-460 4-32 (34)
360 PF09477 Type_III_YscG: Bacter 84.0 14 0.0003 26.8 10.0 82 88-174 18-99 (116)
361 KOG4077 Cytochrome c oxidase, 84.0 7.5 0.00016 29.0 6.8 58 410-471 69-126 (149)
362 PF13929 mRNA_stabil: mRNA sta 83.7 30 0.00065 30.4 20.5 114 229-342 143-262 (292)
363 KOG2396 HAT (Half-A-TPR) repea 83.5 42 0.00091 31.9 29.1 362 93-474 88-505 (568)
364 KOG4077 Cytochrome c oxidase, 83.2 8.2 0.00018 28.8 6.7 45 198-242 68-112 (149)
365 PRK10941 hypothetical protein; 83.0 21 0.00046 31.3 10.6 63 254-316 185-247 (269)
366 PF13929 mRNA_stabil: mRNA sta 83.0 32 0.0007 30.2 16.4 115 195-309 144-263 (292)
367 KOG0686 COP9 signalosome, subu 82.8 40 0.00086 31.1 13.5 93 146-240 152-255 (466)
368 PF10345 Cohesin_load: Cohesin 81.6 63 0.0014 32.6 34.2 371 82-457 106-605 (608)
369 COG4455 ImpE Protein of avirul 81.5 30 0.00066 28.9 13.0 77 321-398 4-80 (273)
370 COG2909 MalT ATP-dependent tra 79.5 80 0.0017 32.6 29.3 224 154-378 425-684 (894)
371 KOG2471 TPR repeat-containing 79.5 58 0.0013 31.0 14.5 40 88-127 29-68 (696)
372 PF14689 SPOB_a: Sensor_kinase 79.4 4.8 0.0001 25.9 4.2 29 143-171 22-50 (62)
373 PF07721 TPR_4: Tetratricopept 78.7 3.4 7.3E-05 20.9 2.7 14 258-271 9-22 (26)
374 TIGR03504 FimV_Cterm FimV C-te 78.2 4.9 0.00011 23.7 3.6 20 152-171 7-26 (44)
375 PF07575 Nucleopor_Nup85: Nup8 77.9 79 0.0017 31.6 18.6 75 304-380 390-465 (566)
376 TIGR03504 FimV_Cterm FimV C-te 77.4 6.7 0.00015 23.1 4.0 22 397-418 6-27 (44)
377 PF14689 SPOB_a: Sensor_kinase 77.1 11 0.00025 24.2 5.4 47 369-419 6-52 (62)
378 PF10579 Rapsyn_N: Rapsyn N-te 76.5 9.2 0.0002 25.9 4.8 49 365-415 18-68 (80)
379 COG0790 FOG: TPR repeat, SEL1 76.2 57 0.0012 29.1 17.9 130 333-477 92-236 (292)
380 PF14561 TPR_20: Tetratricopep 75.2 26 0.00056 24.7 8.9 55 279-333 17-73 (90)
381 PF04190 DUF410: Protein of un 74.9 58 0.0013 28.5 19.5 84 247-347 87-170 (260)
382 PF07163 Pex26: Pex26 protein; 74.7 55 0.0012 28.7 10.1 86 221-307 90-181 (309)
383 PF12862 Apc5: Anaphase-promot 74.7 27 0.00059 24.7 8.2 59 401-459 9-71 (94)
384 KOG1308 Hsp70-interacting prot 74.6 6 0.00013 35.2 4.7 91 262-352 126-216 (377)
385 PHA02875 ankyrin repeat protei 74.1 40 0.00086 31.9 10.7 210 120-353 8-230 (413)
386 KOG1464 COP9 signalosome, subu 73.8 59 0.0013 28.2 24.4 266 105-377 20-327 (440)
387 PF07163 Pex26: Pex26 protein; 73.7 62 0.0013 28.3 13.6 86 291-376 90-181 (309)
388 PF09670 Cas_Cas02710: CRISPR- 73.3 42 0.00092 31.3 10.3 57 325-382 138-198 (379)
389 cd00280 TRFH Telomeric Repeat 73.2 28 0.0006 28.2 7.5 41 397-444 118-158 (200)
390 PRK14136 recX recombination re 72.8 69 0.0015 28.5 12.3 28 56-83 192-219 (309)
391 PRK09687 putative lyase; Provi 72.8 69 0.0015 28.4 27.2 80 177-263 35-118 (280)
392 KOG0545 Aryl-hydrocarbon recep 72.0 21 0.00045 30.4 6.9 100 360-466 185-301 (329)
393 COG5159 RPN6 26S proteasome re 71.5 71 0.0015 28.1 18.9 199 80-278 7-234 (421)
394 cd08819 CARD_MDA5_2 Caspase ac 71.5 31 0.00068 23.9 6.6 15 89-103 49-63 (88)
395 cd00280 TRFH Telomeric Repeat 71.5 46 0.00099 27.0 8.4 65 406-477 85-157 (200)
396 PF12862 Apc5: Anaphase-promot 71.3 30 0.00066 24.5 7.1 17 294-310 51-67 (94)
397 KOG2063 Vacuolar assembly/sort 71.0 1.4E+02 0.003 31.3 21.8 26 147-172 507-532 (877)
398 KOG3364 Membrane protein invol 70.9 45 0.00097 25.5 9.1 57 405-465 50-107 (149)
399 PF11846 DUF3366: Domain of un 70.6 21 0.00046 29.5 7.0 34 140-173 140-173 (193)
400 smart00777 Mad3_BUB1_I Mad3/BU 70.5 26 0.00056 26.5 6.7 40 303-342 82-123 (125)
401 PRK09687 putative lyase; Provi 70.5 78 0.0017 28.1 27.5 9 372-380 253-261 (280)
402 PHA02875 ankyrin repeat protei 70.5 62 0.0014 30.6 11.2 15 370-384 297-311 (413)
403 PF04762 IKI3: IKI3 family; I 69.2 1.2E+02 0.0026 32.4 13.4 30 353-382 812-843 (928)
404 TIGR02508 type_III_yscG type I 68.5 41 0.00089 24.1 7.3 51 327-383 48-98 (115)
405 PF10579 Rapsyn_N: Rapsyn N-te 68.5 15 0.00032 24.9 4.4 45 331-375 19-65 (80)
406 PF13762 MNE1: Mitochondrial s 68.5 54 0.0012 25.5 10.3 78 115-192 43-128 (145)
407 COG4976 Predicted methyltransf 68.3 14 0.00029 31.1 5.1 58 401-463 6-63 (287)
408 PF04910 Tcf25: Transcriptiona 68.3 1E+02 0.0022 28.6 19.0 57 256-312 109-167 (360)
409 PF11663 Toxin_YhaV: Toxin wit 67.9 5.5 0.00012 30.1 2.6 32 156-189 107-138 (140)
410 PF11846 DUF3366: Domain of un 67.6 35 0.00077 28.2 7.8 37 245-281 139-175 (193)
411 PF08311 Mad3_BUB1_I: Mad3/BUB 67.1 53 0.0011 24.9 8.3 77 127-206 49-126 (126)
412 KOG2300 Uncharacterized conser 66.8 1.2E+02 0.0027 29.0 30.4 362 88-458 59-514 (629)
413 PF09986 DUF2225: Uncharacteri 66.7 30 0.00065 29.2 7.1 85 400-484 87-186 (214)
414 PF11817 Foie-gras_1: Foie gra 66.2 58 0.0013 28.2 9.1 62 394-455 182-244 (247)
415 PF04910 Tcf25: Transcriptiona 65.8 1.1E+02 0.0025 28.3 15.7 57 360-418 110-167 (360)
416 KOG0376 Serine-threonine phosp 65.8 17 0.00036 34.2 5.7 88 259-346 13-100 (476)
417 PF13934 ELYS: Nuclear pore co 65.7 86 0.0019 26.8 12.8 78 88-171 90-167 (226)
418 COG2178 Predicted RNA-binding 64.7 78 0.0017 26.0 9.1 19 440-458 132-150 (204)
419 COG5191 Uncharacterized conser 64.6 21 0.00046 31.5 5.8 80 388-472 105-185 (435)
420 KOG3807 Predicted membrane pro 64.5 1.1E+02 0.0024 27.5 11.7 59 220-278 281-339 (556)
421 PF11848 DUF3368: Domain of un 64.2 29 0.00063 20.9 5.0 34 86-119 12-45 (48)
422 TIGR02710 CRISPR-associated pr 63.3 94 0.002 28.9 10.0 54 325-378 137-196 (380)
423 COG0735 Fur Fe2+/Zn2+ uptake r 62.2 72 0.0016 24.9 8.0 63 166-229 8-70 (145)
424 KOG0128 RNA-binding protein SA 62.1 2E+02 0.0042 29.7 21.9 97 213-312 112-218 (881)
425 KOG4279 Serine/threonine prote 61.8 1.9E+02 0.0041 29.5 15.3 29 76-104 201-229 (1226)
426 PF00244 14-3-3: 14-3-3 protei 60.8 1.1E+02 0.0024 26.3 15.0 51 406-457 142-197 (236)
427 KOG2066 Vacuolar assembly/sort 60.7 2E+02 0.0044 29.4 28.7 102 83-191 363-467 (846)
428 PF04762 IKI3: IKI3 family; I 60.5 2.4E+02 0.0053 30.3 17.8 23 79-101 697-719 (928)
429 KOG0376 Serine-threonine phosp 60.2 25 0.00054 33.1 5.8 104 325-439 11-115 (476)
430 KOG0292 Vesicle coat complex C 60.1 52 0.0011 33.8 8.2 132 118-278 650-781 (1202)
431 PF04090 RNA_pol_I_TF: RNA pol 59.9 1E+02 0.0022 25.6 12.5 29 319-347 42-70 (199)
432 PRK11639 zinc uptake transcrip 59.9 57 0.0012 26.3 7.3 65 63-128 13-77 (169)
433 PF10255 Paf67: RNA polymerase 59.6 1.6E+02 0.0034 27.8 12.0 63 216-278 124-192 (404)
434 PF14853 Fis1_TPR_C: Fis1 C-te 58.4 42 0.00091 20.8 5.5 25 396-420 7-31 (53)
435 smart00638 LPD_N Lipoprotein N 58.3 2.1E+02 0.0045 28.7 24.8 64 110-176 309-372 (574)
436 COG5187 RPN7 26S proteasome re 58.3 1.3E+02 0.0029 26.5 13.4 26 215-240 116-141 (412)
437 PRK14135 recX recombination re 58.3 1.3E+02 0.0028 26.4 15.3 91 42-135 73-163 (263)
438 KOG2422 Uncharacterized conser 58.3 1.9E+02 0.0042 28.4 18.4 95 325-419 349-448 (665)
439 PF09477 Type_III_YscG: Bacter 57.8 72 0.0016 23.3 8.9 30 427-458 69-98 (116)
440 COG2137 OraA Uncharacterized p 57.0 1E+02 0.0023 24.9 12.3 125 43-171 37-165 (174)
441 PF09986 DUF2225: Uncharacteri 56.8 1.2E+02 0.0026 25.6 10.2 55 406-460 141-196 (214)
442 PRK00117 recX recombination re 56.7 98 0.0021 24.5 12.4 65 42-108 27-91 (157)
443 PRK13342 recombination factor 56.5 1.8E+02 0.004 27.6 17.0 32 157-188 243-274 (413)
444 PF13762 MNE1: Mitochondrial s 56.0 96 0.0021 24.2 8.5 82 146-227 41-128 (145)
445 KOG4521 Nuclear pore complex, 56.0 3E+02 0.0064 29.9 13.4 129 286-418 985-1131(1480)
446 COG0735 Fur Fe2+/Zn2+ uptake r 55.6 81 0.0018 24.6 7.3 31 322-352 24-54 (145)
447 PF11848 DUF3368: Domain of un 55.0 45 0.00097 20.1 4.7 27 192-218 15-41 (48)
448 COG2178 Predicted RNA-binding 54.9 1.2E+02 0.0026 25.0 10.2 59 258-316 37-101 (204)
449 KOG4567 GTPase-activating prot 54.7 88 0.0019 27.8 7.8 68 132-204 264-343 (370)
450 KOG2066 Vacuolar assembly/sort 54.6 2.6E+02 0.0056 28.7 22.4 102 118-226 363-467 (846)
451 PF11817 Foie-gras_1: Foie gra 54.6 58 0.0013 28.2 7.1 57 184-240 183-244 (247)
452 PF09454 Vps23_core: Vps23 cor 54.5 50 0.0011 21.5 5.0 53 73-126 5-57 (65)
453 PRK09462 fur ferric uptake reg 54.1 67 0.0015 25.1 6.8 63 64-127 5-68 (148)
454 PRK10564 maltose regulon perip 53.8 26 0.00056 31.0 4.6 35 142-176 254-289 (303)
455 KOG0687 26S proteasome regulat 53.0 1.8E+02 0.0038 26.3 15.7 25 216-240 106-130 (393)
456 cd08819 CARD_MDA5_2 Caspase ac 52.6 77 0.0017 22.1 7.2 64 338-409 22-85 (88)
457 KOG1308 Hsp70-interacting prot 52.4 8.9 0.00019 34.2 1.7 90 225-316 125-214 (377)
458 PF11663 Toxin_YhaV: Toxin wit 52.4 18 0.0004 27.4 3.0 33 86-120 105-137 (140)
459 KOG3824 Huntingtin interacting 52.1 40 0.00086 29.8 5.4 18 365-382 128-145 (472)
460 PF04190 DUF410: Protein of un 52.0 1.7E+02 0.0036 25.7 19.1 24 317-340 89-112 (260)
461 KOG0551 Hsp90 co-chaperone CNS 51.8 49 0.0011 29.7 5.9 96 356-458 84-182 (390)
462 PRK10564 maltose regulon perip 51.2 26 0.00057 30.9 4.3 42 177-218 254-296 (303)
463 KOG3636 Uncharacterized conser 51.1 2.2E+02 0.0047 26.9 15.8 220 41-262 16-272 (669)
464 PF06957 COPI_C: Coatomer (COP 51.1 2.1E+02 0.0045 27.2 10.2 33 431-463 302-334 (422)
465 COG5108 RPO41 Mitochondrial DN 50.9 1.4E+02 0.0031 29.7 9.2 89 255-346 33-131 (1117)
466 KOG0128 RNA-binding protein SA 50.5 3.1E+02 0.0067 28.4 31.2 97 75-172 112-218 (881)
467 KOG3364 Membrane protein invol 50.1 1.2E+02 0.0025 23.4 7.1 17 328-344 81-97 (149)
468 PF09454 Vps23_core: Vps23 cor 49.4 72 0.0016 20.8 5.5 33 351-383 6-38 (65)
469 KOG4814 Uncharacterized conser 49.1 2.9E+02 0.0063 27.7 11.9 123 257-379 361-505 (872)
470 PF09868 DUF2095: Uncharacteri 49.0 86 0.0019 23.0 5.7 39 82-121 67-105 (128)
471 PF10255 Paf67: RNA polymerase 49.0 2.4E+02 0.0051 26.7 14.7 59 253-311 125-191 (404)
472 KOG3677 RNA polymerase I-assoc 48.8 2.3E+02 0.0051 26.5 10.1 35 366-402 362-396 (525)
473 PF10366 Vps39_1: Vacuolar sor 48.3 1E+02 0.0022 22.6 6.4 27 392-418 41-67 (108)
474 PF02631 RecX: RecX family; I 47.4 1.2E+02 0.0025 22.7 9.2 114 50-169 1-118 (121)
475 KOG0403 Neoplastic transformat 46.9 2.6E+02 0.0057 26.6 19.7 27 216-242 347-373 (645)
476 PF02184 HAT: HAT (Half-A-TPR) 46.3 35 0.00075 18.5 2.7 20 128-147 4-23 (32)
477 KOG0292 Vesicle coat complex C 46.1 3.4E+02 0.0074 28.5 11.1 180 86-313 603-782 (1202)
478 PF09797 NatB_MDM20: N-acetylt 46.0 2.5E+02 0.0054 26.1 23.3 258 146-414 3-310 (365)
479 COG5108 RPO41 Mitochondrial DN 46.0 1.2E+02 0.0026 30.3 7.9 91 81-172 33-131 (1117)
480 PF09670 Cas_Cas02710: CRISPR- 45.7 2.6E+02 0.0057 26.2 13.2 56 291-347 138-198 (379)
481 KOG0545 Aryl-hydrocarbon recep 45.4 2E+02 0.0044 24.8 11.2 99 318-420 178-294 (329)
482 PF15297 CKAP2_C: Cytoskeleton 45.1 2.3E+02 0.005 25.9 9.1 64 301-364 120-186 (353)
483 PF07575 Nucleopor_Nup85: Nup8 44.7 3.4E+02 0.0073 27.2 21.6 60 391-456 406-465 (566)
484 PRK14956 DNA polymerase III su 44.6 3.1E+02 0.0067 26.7 13.3 32 146-177 250-281 (484)
485 KOG0686 COP9 signalosome, subu 44.3 2.7E+02 0.006 26.1 13.5 95 180-276 151-255 (466)
486 KOG3677 RNA polymerase I-assoc 44.2 1.9E+02 0.0042 27.0 8.5 149 217-365 238-396 (525)
487 PF11768 DUF3312: Protein of u 44.1 3.2E+02 0.007 26.8 11.9 23 289-311 413-435 (545)
488 PF07720 TPR_3: Tetratricopept 43.3 59 0.0013 18.1 4.3 18 434-451 6-23 (36)
489 KOG3807 Predicted membrane pro 43.3 2.5E+02 0.0055 25.4 14.6 16 365-380 287-302 (556)
490 PF07064 RIC1: RIC1; InterPro 42.3 2.4E+02 0.0051 24.7 15.2 26 78-103 84-109 (258)
491 PF08314 Sec39: Secretory path 42.3 3.5E+02 0.0075 28.1 11.5 65 74-139 430-505 (715)
492 PF04090 RNA_pol_I_TF: RNA pol 42.2 2E+02 0.0044 23.9 12.3 50 284-333 41-91 (199)
493 KOG2297 Predicted translation 41.5 2.6E+02 0.0057 25.0 20.1 274 107-418 107-399 (412)
494 KOG1839 Uncharacterized protei 40.7 5.4E+02 0.012 28.4 12.4 158 258-415 940-1124(1236)
495 COG2912 Uncharacterized conser 39.5 1.4E+02 0.0031 26.1 6.8 64 397-465 188-251 (269)
496 PF11768 DUF3312: Protein of u 39.4 3.8E+02 0.0083 26.3 10.4 25 79-103 411-435 (545)
497 KOG2034 Vacuolar sorting prote 39.3 4.8E+02 0.01 27.4 25.6 302 84-416 366-687 (911)
498 PF10366 Vps39_1: Vacuolar sor 39.2 1.5E+02 0.0033 21.7 8.2 42 57-104 26-67 (108)
499 KOG0687 26S proteasome regulat 39.1 3E+02 0.0065 25.0 14.5 95 284-380 104-208 (393)
500 PRK11639 zinc uptake transcrip 38.3 2.1E+02 0.0046 23.0 8.1 61 170-231 17-77 (169)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.3e-62 Score=488.30 Aligned_cols=465 Identities=13% Similarity=0.097 Sum_probs=405.0
Q ss_pred hhhhhhHHhhhcCCCCccccccCCCCCCCCC-CCchhHH-HHHHhhcCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 048394 10 ISTGSYLVRQLCSTPTETVSQRIAAPTPFPT-GNEDKLY-KRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLR 87 (485)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~-~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 87 (485)
...+..+...++..+....+...+..++..+ .++..++ ..+.+.....+.+.+++..+.... .|+..+|+.++.+|+
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-~pd~~Tyn~LL~a~~ 448 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-NPTLSTFNMLMSVCA 448 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3445566777778888888888888887766 3344433 334444444566666665554433 389999999999999
Q ss_pred HcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcc--cCCCHhHHHHHHHHHHhcCcHHHHHH
Q 048394 88 KFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE--YAKNRYTYGALLNCYCKELMTERALA 165 (485)
Q Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~ 165 (485)
+.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ ..||..+|+.+|.+|++.|++++|.+
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~ 528 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999987 67899999999999999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHH--cCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhc
Q 048394 166 LFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQ--RNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNE 243 (485)
Q Consensus 166 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 243 (485)
+|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+
T Consensus 529 lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e- 607 (1060)
T PLN03218 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE- 607 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 999999999999999999999999999999999999999976 57899999999999999999999999999999998
Q ss_pred cCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC-ChhhH
Q 048394 244 CEDKCRWTTYSNLASIYVKAELFEKAELALKKLEE-MKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP-TNTSY 321 (485)
Q Consensus 244 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~ 321 (485)
.+..|+..+|+.++.+|++.|++++|.++|++|.+ +..||..+|+.++.+|++.|++++|.++++.|.+.+.. +..+|
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 78899999999999999999999999999999998 66779999999999999999999999999999998887 99999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHH
Q 048394 322 LVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYL 401 (485)
Q Consensus 322 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 401 (485)
+.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+ .||..+|+.++.+|+
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi--~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL--CPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred hcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhh----c-------------------CChhhHHHHHHHHhhc
Q 048394 402 RSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEE----E-------------------KDVDGAEEFCKVLKSL 458 (485)
Q Consensus 402 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------~~~~~A~~~~~~~~~~ 458 (485)
+.|++++|.+++++|.+.| +.||..+|+.++..|.+ . +..+.|..+|++|.+.
T Consensus 766 k~G~le~A~~l~~~M~k~G----i~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKEDG----IKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 9999999999999999988 88999999998876532 1 1235788999999987
Q ss_pred C-CCCHHHHHHHHHHHHHhCCCcch
Q 048394 459 N-CLDFSAYSLLIKTYIAAGKLASD 482 (485)
Q Consensus 459 ~-~~~~~~~~~l~~~~~~~g~~~~A 482 (485)
+ .||..+|..++.++++.+..+.+
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~ 866 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLR 866 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHH
Confidence 7 46889999998877776665543
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.4e-61 Score=478.63 Aligned_cols=453 Identities=15% Similarity=0.115 Sum_probs=412.9
Q ss_pred hhHHhhhcCCCCccccccCCCCCCCCC-CCchhHHHHHHhhcCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCh
Q 048394 14 SYLVRQLCSTPTETVSQRIAAPTPFPT-GNEDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRY 92 (485)
Q Consensus 14 ~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 92 (485)
..++..++..+....+...+..++.+. .++..++..+.+.+. ......+++.|.+.|..||..+|+.++.+|++.|++
T Consensus 410 ~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~-~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~v 488 (1060)
T PLN03218 410 AKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQD-IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCH
Confidence 345555666666777776666666543 455555566555433 556677788899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcc--cCCCHhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 048394 93 RHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE--YAKNRYTYGALLNCYCKELMTERALALFEKM 170 (485)
Q Consensus 93 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 170 (485)
+.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+ ..||..+|+.||.+|++.|++++|.++|++|
T Consensus 489 d~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM 568 (1060)
T PLN03218 489 DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEM 568 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987 8899999999999999999999999999999
Q ss_pred Hh--CCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCC
Q 048394 171 DE--LKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKC 248 (485)
Q Consensus 171 ~~--~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 248 (485)
.. .|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+ .+..|
T Consensus 569 ~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~-~Gv~P 647 (1060)
T PLN03218 569 KAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK-KGVKP 647 (1060)
T ss_pred HHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCC
Confidence 76 6789999999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC-ChhhHHHHHH
Q 048394 249 RWTTYSNLASIYVKAELFEKAELALKKLEE-MKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP-TNTSYLVLLQ 326 (485)
Q Consensus 249 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~ 326 (485)
|..+|+.++.+|++.|++++|.++++.|.+ +.+|+..+|+.++.+|++.|++++|.++|++|...+.. +..+|+.+|.
T Consensus 648 D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~ 727 (1060)
T PLN03218 648 DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALIT 727 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999 66789999999999999999999999999999988777 9999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHh----
Q 048394 327 ALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLR---- 402 (485)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---- 402 (485)
+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|.+|.+.|+ .||..+|+.++..|.+
T Consensus 728 gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi--~pd~~tynsLIglc~~~y~k 805 (1060)
T PLN03218 728 ALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI--KPNLVMCRCITGLCLRRFEK 805 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 9999999999876432
Q ss_pred c-------------------ccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhc-CCCC
Q 048394 403 S-------------------RQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSL-NCLD 462 (485)
Q Consensus 403 ~-------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~ 462 (485)
. +..+.|+.+|++|.+.| +.||..||..++.++.+.+....+..+++.+... .+++
T Consensus 806 a~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~G----i~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~ 881 (1060)
T PLN03218 806 ACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAG----TLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQK 881 (1060)
T ss_pred HhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcc
Confidence 1 23467999999999999 9999999999998888889999999999887654 3568
Q ss_pred HHHHHHHHHHHH
Q 048394 463 FSAYSLLIKTYI 474 (485)
Q Consensus 463 ~~~~~~l~~~~~ 474 (485)
..+|+.|+.++.
T Consensus 882 ~~~y~~Li~g~~ 893 (1060)
T PLN03218 882 QSNLSTLVDGFG 893 (1060)
T ss_pred hhhhHHHHHhhc
Confidence 999999999984
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.1e-60 Score=480.22 Aligned_cols=458 Identities=12% Similarity=0.076 Sum_probs=405.7
Q ss_pred hhhhhhHHhhhcCCCCccccccCCCCCCCCC-CCchhHHHHHHhhcCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 048394 10 ISTGSYLVRQLCSTPTETVSQRIAAPTPFPT-GNEDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRK 88 (485)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 88 (485)
..+++.++..++..+..+.+...+..++.+. .+|+.++..+.+.+. ......++++|.+.|+.||..+|+.++.+|++
T Consensus 222 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~-~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~ 300 (857)
T PLN03077 222 VDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGE-CLEGLELFFTMRELSVDPDLMTITSVISACEL 300 (857)
T ss_pred cchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Confidence 3456788999999999999999999998876 778888888887655 56677788999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHHHHH
Q 048394 89 FGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFE 168 (485)
Q Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 168 (485)
.|+.+.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. ||..+||++|.+|++.|++++|+++|+
T Consensus 301 ~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~~s~n~li~~~~~~g~~~~A~~lf~ 378 (857)
T PLN03077 301 LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET--KDAVSWTAMISGYEKNGLPDKALETYA 378 (857)
T ss_pred cCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeeHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999986 899999999999999999999999999
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCC
Q 048394 169 KMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKC 248 (485)
Q Consensus 169 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 248 (485)
+|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+ +
T Consensus 379 ~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~ 453 (857)
T PLN03077 379 LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE-----K 453 (857)
T ss_pred HHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC-----C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999865 4
Q ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcC--------------
Q 048394 249 RWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTF-------------- 314 (485)
Q Consensus 249 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------- 314 (485)
|..+|+.++.+|++.|+.++|..+|++|.....||..+|+.++.+|++.|+.+.+.+++..+.+.+
T Consensus 454 d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~ 533 (857)
T PLN03077 454 DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533 (857)
T ss_pred CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH
Confidence 667888899999999999999999998887666777777766655555554444444444443333
Q ss_pred -----------------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHH
Q 048394 315 -----------------PPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFN 377 (485)
Q Consensus 315 -----------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 377 (485)
.+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+
T Consensus 534 y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~ 613 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613 (857)
T ss_pred HHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHH
Confidence 347778888888888888899999999999988899999999999999999999999999999
Q ss_pred HHH-hcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHh
Q 048394 378 NAK-KRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLK 456 (485)
Q Consensus 378 ~~~-~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 456 (485)
.|. +.|+ .|+..+|+.++.+|++.|++++|.+++++|. ..||..+|.+|+.+|...|+.+.++...+++.
T Consensus 614 ~M~~~~gi--~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-------~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~ 684 (857)
T PLN03077 614 SMEEKYSI--TPNLKHYACVVDLLGRAGKLTEAYNFINKMP-------ITPDPAVWGALLNACRIHRHVELGELAAQHIF 684 (857)
T ss_pred HHHHHhCC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 988 5688 8998999999999999999999999988873 56999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHhCCCcchhc
Q 048394 457 SLNCLDFSAYSLLIKTYIAAGKLASDMR 484 (485)
Q Consensus 457 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 484 (485)
+..|.+...|..|+++|.+.|+|++|.+
T Consensus 685 ~l~p~~~~~y~ll~n~ya~~g~~~~a~~ 712 (857)
T PLN03077 685 ELDPNSVGYYILLCNLYADAGKWDEVAR 712 (857)
T ss_pred hhCCCCcchHHHHHHHHHHCCChHHHHH
Confidence 9999999999999999999999998864
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.9e-58 Score=469.72 Aligned_cols=458 Identities=14% Similarity=0.126 Sum_probs=364.7
Q ss_pred hhhhhHHhhhcCCCCccccccCCCCCCCCC-CCchhHHHHHHhhcCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc
Q 048394 11 STGSYLVRQLCSTPTETVSQRIAAPTPFPT-GNEDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKF 89 (485)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 89 (485)
..++.++..++..+....+...+..++.+. .+|+.++..+.+.+. ...+..+++.|...|+.||..+|+.++++|+..
T Consensus 122 ~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~-~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~ 200 (857)
T PLN03077 122 RLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGY-FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGI 200 (857)
T ss_pred hHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCc
Confidence 345677888888899999999999998877 778888888877554 566777788888899999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHHHHHH
Q 048394 90 GRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEK 169 (485)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 169 (485)
+++..+.+++..|.+.|+.||..+|+.++.+|++.|+++.|.++|++|.. ||..+||++|.+|++.|++++|+++|++
T Consensus 201 ~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 201 PDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR--RDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred cchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC--CCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 8999999999999999999999999999
Q ss_pred HHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCc
Q 048394 170 MDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCR 249 (485)
Q Consensus 170 m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 249 (485)
|...|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. ||
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~d 353 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-----KD 353 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998864 56
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC-ChhhHHHHHHH
Q 048394 250 WTTYSNLASIYVKAELFEKAELALKKLEE-MKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP-TNTSYLVLLQA 327 (485)
Q Consensus 250 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~ 327 (485)
..+|+.++.+|++.|++++|.++|++|.+ ...|+..+|+.++.+|++.|+++.|.++++.+.+.+.. +..+++.++.+
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~ 433 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 77888888888888888888888888877 55567777777777777777777777777777776666 66666666666
Q ss_pred HHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHh--------------------------
Q 048394 328 LAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKK-------------------------- 381 (485)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------------------- 381 (485)
|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|..
T Consensus 434 y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~ 509 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGK 509 (857)
T ss_pred HHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhH
Confidence 6666666666666665533 2333344444333333333333333333321
Q ss_pred --------ccc----------------------------ccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCC
Q 048394 382 --------RAN----------------------------ASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHW 425 (485)
Q Consensus 382 --------~~~----------------------------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 425 (485)
.|+ ...||..+|+.+|.+|++.|+.++|+++|++|.+.| .
T Consensus 510 ~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g----~ 585 (857)
T PLN03077 510 EIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG----V 585 (857)
T ss_pred HHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC----C
Confidence 110 003567777777777777777777777777777776 7
Q ss_pred CccHHHHHHHHHHHhhcCChhhHHHHHHHHhh-cC-CCCHHHHHHHHHHHHHhCCCcchhc
Q 048394 426 RPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKS-LN-CLDFSAYSLLIKTYIAAGKLASDMR 484 (485)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 484 (485)
.||..||+.++.+|.+.|++++|.++|+.|.+ .+ .|+..+|..++.+|++.|++++|.+
T Consensus 586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~ 646 (857)
T PLN03077 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYN 646 (857)
T ss_pred CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHH
Confidence 77777777777777777777777777777773 22 4567777777777777777777753
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.7e-59 Score=461.10 Aligned_cols=424 Identities=16% Similarity=0.147 Sum_probs=356.4
Q ss_pred CCchhHHHHHHhhcCCCCcHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 048394 41 GNEDKLYKRLSALGATGGSVTGALNAYIME-GKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLD 119 (485)
Q Consensus 41 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 119 (485)
..|..++..+.+.+. ...+.++++.|... +..|+..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+|+.++.
T Consensus 88 ~~~~~~i~~l~~~g~-~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 88 VSLCSQIEKLVACGR-HREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred eeHHHHHHHHHcCCC-HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 456667666666433 45556666777665 4678999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChh-------------------
Q 048394 120 LTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTV------------------- 180 (485)
Q Consensus 120 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~------------------- 180 (485)
+|++.|+++.|.++|++|.+ ||..+||.+|.+|++.|++++|+++|++|.+.|+.||..
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999986 899999999999999999999999999998777666554
Q ss_pred ----------------hHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcc
Q 048394 181 ----------------AFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNEC 244 (485)
Q Consensus 181 ----------------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 244 (485)
+|+.|+.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|++++|.++|++|.+ .
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~-~ 319 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRD-S 319 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH-c
Confidence 45667777777788888888887774 35778888888888888888888888888877 6
Q ss_pred CCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHH
Q 048394 245 EDKCRWTTYSNLASIYVKAELFEKAELALKKLEE-MKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLV 323 (485)
Q Consensus 245 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 323 (485)
+..||..+|+.++.+|++.|++++|.+++..|.+ +.+++..+|+.++++|++.|++++|.++|++|.+ +|..+|+.
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~ 396 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNA 396 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHH
Confidence 7888888888888888888888888888888887 5567888888888888888888888888888753 37788888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHh-cccccCCchhHHHHHHHHHHh
Q 048394 324 LLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKK-RANASARFFKSRESFMIYYLR 402 (485)
Q Consensus 324 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~p~~~~~~~l~~~~~~ 402 (485)
+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+ .|+..+|+.++++|++
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~--~p~~~~y~~li~~l~r 474 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI--KPRAMHYACMIELLGR 474 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC--CCCccchHhHHHHHHh
Confidence 8888888888888888888888888888888888888888888888888888888875 477 8888888888888888
Q ss_pred cccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcch
Q 048394 403 SRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASD 482 (485)
Q Consensus 403 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 482 (485)
.|++++|.+++++| + +.|+..+|++++.+|...|+++.|..+++++.+..|.+..+|..|+++|++.|++++|
T Consensus 475 ~G~~~eA~~~~~~~---~----~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 475 EGLLDEAYAMIRRA---P----FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred cCCHHHHHHHHHHC---C----CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHH
Confidence 88888888888765 2 6799999999999999999999999999999999999999999999999999999998
Q ss_pred hc
Q 048394 483 MR 484 (485)
Q Consensus 483 ~~ 484 (485)
.+
T Consensus 548 ~~ 549 (697)
T PLN03081 548 AK 549 (697)
T ss_pred HH
Confidence 64
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.7e-57 Score=450.77 Aligned_cols=396 Identities=14% Similarity=0.155 Sum_probs=365.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcc--cCCCHhHH
Q 048394 71 GKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRK-MHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE--YAKNRYTY 147 (485)
Q Consensus 71 g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~ 147 (485)
....+...++.++..+.+.|++++|+++|++|...+ ..||..+|+.++.+|++.++++.+.+++..|.+ ..||..+|
T Consensus 82 ~~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~ 161 (697)
T PLN03081 82 QIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM 161 (697)
T ss_pred cCCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHH
Confidence 455667789999999999999999999999998764 679999999999999999999999999999988 78999999
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 048394 148 GALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHL 227 (485)
Q Consensus 148 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 227 (485)
+.|+.+|++.|++++|.++|++|.+ ||..+||.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|+..
T Consensus 162 n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 162 NRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC
Confidence 9999999999999999999999975 799999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHH
Q 048394 228 NDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVW 307 (485)
Q Consensus 228 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 307 (485)
|..+.+.+++..+.+ .+..+|..+|+.++.+|++.|++++|.++|+.| .+++..+|+.++.+|++.|++++|.++|
T Consensus 238 ~~~~~~~~l~~~~~~-~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf 313 (697)
T PLN03081 238 GSARAGQQLHCCVLK-TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLY 313 (697)
T ss_pred CcHHHHHHHHHHHHH-hCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999988 789999999999999999999999999999885 4568899999999999999999999999
Q ss_pred HHhhhcCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhccccc
Q 048394 308 GILKSTFPP-TNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANAS 386 (485)
Q Consensus 308 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 386 (485)
++|...+.. +..+|+.++.+|++.|++++|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|.
T Consensus 314 ~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~------ 387 (697)
T PLN03081 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP------ 387 (697)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC------
Confidence 999988877 9999999999999999999999999999999999999999999999999999999999999885
Q ss_pred CCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhc-C-CCCHH
Q 048394 387 ARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSL-N-CLDFS 464 (485)
Q Consensus 387 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~ 464 (485)
.||..+|+.+|.+|++.|+.++|+++|++|.+.| +.||..||+.++.+|.+.|++++|.++|+.|.+. + .|+..
T Consensus 388 ~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g----~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~ 463 (697)
T PLN03081 388 RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG----VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM 463 (697)
T ss_pred CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc
Confidence 5677899999999999999999999999999988 8999999999999999999999999999999864 2 46788
Q ss_pred HHHHHHHHHHHhCCCcchhc
Q 048394 465 AYSLLIKTYIAAGKLASDMR 484 (485)
Q Consensus 465 ~~~~l~~~~~~~g~~~~A~~ 484 (485)
+|+.++.+|++.|++++|.+
T Consensus 464 ~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYA 483 (697)
T ss_pred chHhHHHHHHhcCCHHHHHH
Confidence 89999999999999998864
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.4e-30 Score=269.73 Aligned_cols=394 Identities=16% Similarity=0.136 Sum_probs=240.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcc-cCCCHhHHHHHHHH
Q 048394 75 RKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE-YAKNRYTYGALLNC 153 (485)
Q Consensus 75 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~ 153 (485)
+...+..+...+...|++++|.+.|+.+...+ +.+..++..+...+.+.|+.++|..+|+++.. .+.+...+..++..
T Consensus 498 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 576 (899)
T TIGR02917 498 FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQY 576 (899)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHH
Confidence 33444444445555555555555555554433 23344445555555555555555555555544 33334445555555
Q ss_pred HHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHH
Q 048394 154 YCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGV 233 (485)
Q Consensus 154 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 233 (485)
+.+.|++++|..+++++..... .+..+|..+..++...|++++|...|+++.+.. +.+...+..+..++.+.|++++|
T Consensus 577 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 654 (899)
T TIGR02917 577 YLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKA 654 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555555554332 244455555555555566666666655555432 22344455555555556666666
Q ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhc
Q 048394 234 ERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKST 313 (485)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 313 (485)
...++.+.+ ..+.+..++..++..+...|++++|..+++.+....|.+...+..+...+...|++++|...++.+...
T Consensus 655 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 732 (899)
T TIGR02917 655 ITSLKRALE--LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR 732 (899)
T ss_pred HHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 666665555 344445555555666666666666666666655555555555666666666666666666666666555
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHH
Q 048394 314 FPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSR 393 (485)
Q Consensus 314 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~ 393 (485)
.+.+ .++..++.++.+.|++++|.+.++.+.+..+. +...+..+...|...|++++|..+|+++.+.+ +++...+
T Consensus 733 ~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~ 807 (899)
T TIGR02917 733 APSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA---PDNAVVL 807 (899)
T ss_pred CCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC---CCCHHHH
Confidence 4443 44445566666666666666666666655433 56666666677777777777777777776654 4455666
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 048394 394 ESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTY 473 (485)
Q Consensus 394 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 473 (485)
+.+...+...|+ .+|+.+++++... .+.+..++..+...+...|++++|.++++++.+.+|.++.++..++.+|
T Consensus 808 ~~l~~~~~~~~~-~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 881 (899)
T TIGR02917 808 NNLAWLYLELKD-PRALEYAEKALKL-----APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALAL 881 (899)
T ss_pred HHHHHHHHhcCc-HHHHHHHHHHHhh-----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 667777777777 6677777777665 3345566677778888889999999999999998888999999999999
Q ss_pred HHhCCCcchhc
Q 048394 474 IAAGKLASDMR 484 (485)
Q Consensus 474 ~~~g~~~~A~~ 484 (485)
++.|++++|++
T Consensus 882 ~~~g~~~~A~~ 892 (899)
T TIGR02917 882 LATGRKAEARK 892 (899)
T ss_pred HHcCCHHHHHH
Confidence 99999988864
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=9.4e-30 Score=265.30 Aligned_cols=392 Identities=17% Similarity=0.117 Sum_probs=196.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcc-cCCCHhHHHHHHHHH
Q 048394 76 KDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE-YAKNRYTYGALLNCY 154 (485)
Q Consensus 76 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~ 154 (485)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.. .+.+..++..+...+
T Consensus 465 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 543 (899)
T TIGR02917 465 ASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLY 543 (899)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 3344444444444444444444444443332 12233333344444444444444444444443 222334444444444
Q ss_pred HhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHH
Q 048394 155 CKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVE 234 (485)
Q Consensus 155 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 234 (485)
.+.|+.++|..+|+++...+.. +...+..++..+...|++++|..+++++.+. .+.+..+|..+..++...|++++|.
T Consensus 544 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~ 621 (899)
T TIGR02917 544 LRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAV 621 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4444444444444444443321 3334444444455555555555555554433 2233444555555555555555555
Q ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcC
Q 048394 235 RVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTF 314 (485)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 314 (485)
..|+.+.+ ..+.+...+..++.++.+.|++++|...++++.+..|.+..++..++..+...|++++|..+++.+....
T Consensus 622 ~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 699 (899)
T TIGR02917 622 SSFKKLLA--LQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH 699 (899)
T ss_pred HHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 55555544 2333444444555555555555555555555555444455555555555555555555555555555554
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHH
Q 048394 315 PPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRE 394 (485)
Q Consensus 315 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~ 394 (485)
+.+...+..+...+...|++++|.+.|..+.+.++. ..++..++.++.+.|++++|...++++.+.. +.+...+.
T Consensus 700 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~---~~~~~~~~ 774 (899)
T TIGR02917 700 PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS--SQNAIKLHRALLASGNTAEAVKTLEAWLKTH---PNDAVLRT 774 (899)
T ss_pred cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--chHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHH
Confidence 444445555555555555555555555555544322 2344445555555555555555555555443 33444555
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 048394 395 SFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYI 474 (485)
Q Consensus 395 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 474 (485)
.+...|...|++++|...|+++.+. .+++..++..+...+...|+ .+|...++++.+..|.++..+..++.+|.
T Consensus 775 ~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (899)
T TIGR02917 775 ALAELYLAQKDYDKAIKHYRTVVKK-----APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLV 848 (899)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 5555555566666666666666554 33445555555555555555 55666666666655556666666666666
Q ss_pred HhCCCcchh
Q 048394 475 AAGKLASDM 483 (485)
Q Consensus 475 ~~g~~~~A~ 483 (485)
..|++++|+
T Consensus 849 ~~g~~~~A~ 857 (899)
T TIGR02917 849 EKGEADRAL 857 (899)
T ss_pred HcCCHHHHH
Confidence 666666654
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=1.7e-25 Score=200.03 Aligned_cols=387 Identities=14% Similarity=0.086 Sum_probs=208.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHH-HHHHHH
Q 048394 76 KDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYG-ALLNCY 154 (485)
Q Consensus 76 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~li~~~ 154 (485)
.++|..+...+...|++++|+.+++.+.+.. +-....|..+..++...|+.+.|...|.+..+..|+..... .+...+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH
Confidence 4445555555555555555555555555443 22344555555555555555555555555555444443222 222223
Q ss_pred HhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHhHH
Q 048394 155 CKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLD-NLTYIVWMQSYSHLNDIDGV 233 (485)
Q Consensus 155 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a 233 (485)
-..|+.++|...+.+..+.... =...|+.|...+-..|+...|++.|++.... .|+ ...|-.|...|...+.++.|
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHH
Confidence 3345555555555555543321 2334555555555555555566555555543 232 34455555555555556666
Q ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhc
Q 048394 234 ERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKST 313 (485)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 313 (485)
...+..... --+....++..+...|-..|+.|-|+..+++..+..|.-+.+|+.|..++-..|++.+|.+.+.+....
T Consensus 272 vs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 272 VSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 655555554 233334455555555555666666666666665555555556666666666666666666666665555
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCc-hhH
Q 048394 314 FPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARF-FKS 392 (485)
Q Consensus 314 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~-~~~ 392 (485)
.+....+.+.|...+...|.+++|..+|....+-.+. -....+.|...|-++|++++|...+++.++. .|+ ...
T Consensus 350 ~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI----~P~fAda 424 (966)
T KOG4626|consen 350 CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI----KPTFADA 424 (966)
T ss_pred CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc----CchHHHH
Confidence 5555555555666666666666666666555554222 2344455555666666666666666655544 332 334
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHH
Q 048394 393 RESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPM-QVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIK 471 (485)
Q Consensus 393 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 471 (485)
|+.+...|-..|+.+.|++.+.+.+... |. .+.+..|...|...|++.+|+.-|+.++++.|+.+.+|..++.
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~n------Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh 498 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQIN------PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLH 498 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcC------cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHH
Confidence 5555555555666666666666655532 32 3455556666666666666666666666666666666655555
Q ss_pred HHHHhCCC
Q 048394 472 TYIAAGKL 479 (485)
Q Consensus 472 ~~~~~g~~ 479 (485)
++.--.+|
T Consensus 499 ~lq~vcdw 506 (966)
T KOG4626|consen 499 CLQIVCDW 506 (966)
T ss_pred HHHHHhcc
Confidence 54433333
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=4.3e-25 Score=197.56 Aligned_cols=433 Identities=15% Similarity=0.137 Sum_probs=359.4
Q ss_pred CCCCCCCCCCCchhHHHHHHhhcCCCCcHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 048394 32 IAAPTPFPTGNEDKLYKRLSALGATGGSVTGALNAYIME--GKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHF 109 (485)
Q Consensus 32 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 109 (485)
-+..++.....--++-.++-. .++..++.+...-- ..+.+......+-..+.+..+.+....--....+.. +.
T Consensus 40 q~~~t~~~~~~~l~lah~~yq----~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q 114 (966)
T KOG4626|consen 40 QFNKTHEGSDDRLELAHRLYQ----GGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQ 114 (966)
T ss_pred HhccCCccchhHHHHHHHHHh----ccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-ch
Confidence 334444443333334444443 77888887654433 334445555555566777777776655444444443 35
Q ss_pred ChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCC-CHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhH-HHHHH
Q 048394 110 SYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAK-NRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAF-NNLST 187 (485)
Q Consensus 110 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~ 187 (485)
-..+|..+.+.+...|++++|+.+++.+.+..| ....|..+..++...|+.+.|.+.|.+.++.+ |+.... +.+..
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgn 192 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhH
Confidence 678999999999999999999999999999545 56799999999999999999999999998854 665443 33444
Q ss_pred HHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHH
Q 048394 188 MYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFE 267 (485)
Q Consensus 188 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 267 (485)
.+...|+.++|...|.+..... +--...|+.|...+...|+...|++.|++..+ -.|--...|-.|...|...+.++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcch
Confidence 5566899999999999988752 22356788899999999999999999999998 55666788999999999999999
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 048394 268 KAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESR 347 (485)
Q Consensus 268 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 347 (485)
.|...+.+.....|....++..+...|...|..|.|++.+++..+..|.-..+|+.|..++-..|++.+|.+.|.+....
T Consensus 270 ~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 270 RAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 99999999999999899999999999999999999999999999999989999999999999999999999999999998
Q ss_pred cCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCc
Q 048394 348 CSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRP 427 (485)
Q Consensus 348 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 427 (485)
.+. .....+.|...|...|.+++|..+|....+.. +--...++.|...|-+.|++++|+..|++.+.. .|
T Consensus 350 ~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~---p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI------~P 419 (966)
T KOG4626|consen 350 CPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF---PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI------KP 419 (966)
T ss_pred CCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC---hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc------Cc
Confidence 766 57777889999999999999999999998763 223456888999999999999999999999985 46
Q ss_pred c-HHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcchhc
Q 048394 428 M-QVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDMR 484 (485)
Q Consensus 428 ~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 484 (485)
+ ...|..+...|...|+...|.+.+.+++...|.-..++..|+.+|...|+..+||.
T Consensus 420 ~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~ 477 (966)
T KOG4626|consen 420 TFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQ 477 (966)
T ss_pred hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHH
Confidence 5 56899999999999999999999999999999999999999999999999999874
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=1.9e-22 Score=211.22 Aligned_cols=455 Identities=12% Similarity=0.020 Sum_probs=294.0
Q ss_pred hhhcCCCCccccccCCCCCCCCCCCch----hHHHHHHhhcCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCChH
Q 048394 18 RQLCSTPTETVSQRIAAPTPFPTGNED----KLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYR 93 (485)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 93 (485)
+.+...+..+.+...+...-...++.. ..+..+.....+.......++.+.+. .|.+......+...+...|+++
T Consensus 120 ~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~-~P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 120 RLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD-YPGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHccCCHH
Confidence 345666777776664333222211121 22333333222333444445555443 3556777888888899999999
Q ss_pred HHHHHHHHHHhCCC------------------C--------------CChhhH---------------------HHHHHH
Q 048394 94 HALEVIEWMESRKM------------------H--------------FSYTDF---------------------AVYLDL 120 (485)
Q Consensus 94 ~A~~~~~~~~~~~~------------------~--------------~~~~~~---------------------~~l~~~ 120 (485)
+|++.++++..... . |+.... ......
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~ 278 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA 278 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 99999998754320 0 110000 011234
Q ss_pred HHhhCCHHHHHHHHHhhcc-cCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC-hhhHH------------HHH
Q 048394 121 TAKTNGIAAAEKYFNGLSE-YAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGN-TVAFN------------NLS 186 (485)
Q Consensus 121 ~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~------------~l~ 186 (485)
+...|++++|+..|++..+ .+.+...+..+...+.+.|++++|+..|++..+...... ...|. ...
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 5667999999999999888 444778889999999999999999999999887653211 11121 223
Q ss_pred HHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHH----------
Q 048394 187 TMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNL---------- 256 (485)
Q Consensus 187 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l---------- 256 (485)
..+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|+++.+ ..+.+...+..+
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~--~~p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALR--MDPGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCHH
Confidence 45678899999999999998863 34566677788899999999999999999887 334444433323
Q ss_pred --------------------------------HHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHH
Q 048394 257 --------------------------------ASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVN 304 (485)
Q Consensus 257 --------------------------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 304 (485)
...+...|++++|...++++.+..|.+...+..+...|.+.|++++|.
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 333445688888888888888877777888888888888888888888
Q ss_pred HHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcc------------------------------------
Q 048394 305 RVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRC------------------------------------ 348 (485)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------------------------ 348 (485)
..++++....+.+...+..+...+...++.++|...++.+....
T Consensus 516 ~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 516 ALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 88888877666655544444444445555555555544321110
Q ss_pred ---CCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCC
Q 048394 349 ---SSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHW 425 (485)
Q Consensus 349 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 425 (485)
...+...+..+...+.+.|++++|...|++..+.. +.+...+..++..|...|++++|++.++...+. .
T Consensus 596 l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~---P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-----~ 667 (1157)
T PRK11447 596 LRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE---PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT-----A 667 (1157)
T ss_pred HHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-----C
Confidence 12234445556666777777777777777776653 334556666677777777777777777766554 2
Q ss_pred CccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCH------HHHHHHHHHHHHhCCCcchhc
Q 048394 426 RPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDF------SAYSLLIKTYIAAGKLASDMR 484 (485)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~ 484 (485)
+.+...+..+..++...|++++|.++++++.+..|.++ ..+..++.++...|++++|+.
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~ 732 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALE 732 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 23445555666666777777777777777766544322 355666777777777777753
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=5.4e-22 Score=195.40 Aligned_cols=371 Identities=12% Similarity=-0.008 Sum_probs=204.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCC-CHhHHHHHHHHHHh
Q 048394 78 MLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAK-NRYTYGALLNCYCK 156 (485)
Q Consensus 78 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~ 156 (485)
.+......+.+.|+++.|+..|++..... |+...|..+..+|.+.|++++|++.++...+..| +...|..+..+|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 34556777889999999999999988764 7788888899999999999999999999988444 56789999999999
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCh-----------------------------hhHHHHHHHH------------------
Q 048394 157 ELMTERALALFEKMDELKFLGNT-----------------------------VAFNNLSTMY------------------ 189 (485)
Q Consensus 157 ~~~~~~A~~~~~~m~~~~~~p~~-----------------------------~~~~~l~~~~------------------ 189 (485)
.|++++|+.-|......+...+. ..+..+...+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 99999998877655432211010 0000000000
Q ss_pred ------------------HhCCCcccHHHHHHHHHHcC-CCc-cHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCc
Q 048394 190 ------------------LRLGQPEKVRPLVNQMKQRN-ISL-DNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCR 249 (485)
Q Consensus 190 ------------------~~~g~~~~a~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 249 (485)
...+++++|.+.|++..+.+ ..| +...+..+...+...|++++|+..++...+ ..+..
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~--l~P~~ 364 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE--LDPRV 364 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCc
Confidence 01133445555555554432 112 223344444445555555555555555554 23333
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 048394 250 WTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALA 329 (485)
Q Consensus 250 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 329 (485)
...|..+..++...|++++|...|+++.+..|.+...|..+...+...|++++|...|++.....+.+...+..+...+.
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence 44455555555555555555555555555545455555555555555555555555555555555544445555555555
Q ss_pred hcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchh------HHHHHHHHHHhc
Q 048394 330 KLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFK------SRESFMIYYLRS 403 (485)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~ 403 (485)
+.|++++|...|+...+..+. +...++.+...+...|++++|...|++..+... ..+.. .++.....+...
T Consensus 445 ~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p--~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEK--ETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--ccccccccHHHHHHHHHHHHHHh
Confidence 555555555555555544322 344555555555555555555555555544321 00000 011111112223
Q ss_pred ccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCC
Q 048394 404 RQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNC 460 (485)
Q Consensus 404 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 460 (485)
|++++|..++++.+... +.+...+..+...+...|++++|.+.|+++.+..+
T Consensus 522 ~~~~eA~~~~~kAl~l~-----p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 522 QDFIEAENLCEKALIID-----PECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred hhHHHHHHHHHHHHhcC-----CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 55555555555554431 12223444455555555555555555555555443
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=1.3e-22 Score=199.83 Aligned_cols=366 Identities=11% Similarity=0.018 Sum_probs=293.9
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC
Q 048394 114 FAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLG 193 (485)
Q Consensus 114 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 193 (485)
+......+.+.|++++|++.|++.....|+...|..+..+|.+.|++++|++.+++..+.+.. +..+|..+..+|...|
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcC
Confidence 445567788899999999999999997889899999999999999999999999999987643 5678899999999999
Q ss_pred CcccHHHHHHHHHHcCC----------------------------Ccc-HHHHHHH------------------------
Q 048394 194 QPEKVRPLVNQMKQRNI----------------------------SLD-NLTYIVW------------------------ 220 (485)
Q Consensus 194 ~~~~a~~~~~~~~~~~~----------------------------~p~-~~~~~~l------------------------ 220 (485)
++++|+..|......+- .|. ...+..+
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDE 288 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccc
Confidence 99999876654432110 000 0000000
Q ss_pred ------HHHH------HhcCCHhHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHH
Q 048394 221 ------MQSY------SHLNDIDGVERVFYEMCNECE-DKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAY 287 (485)
Q Consensus 221 ------~~~~------~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 287 (485)
+... ...+++++|.+.|+...+... .+.....+..+..++...|++++|...+++.....|.....|
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~ 368 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSY 368 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 0000 112578899999999887222 244556788889999999999999999999999888888999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcC
Q 048394 288 HFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKD 367 (485)
Q Consensus 288 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 367 (485)
..+...+...|++++|...++++.+..+.+...+..+...+...|++++|...|++..+..+. +...+..+..++.+.|
T Consensus 369 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g 447 (615)
T TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEG 447 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCC
Confidence 999999999999999999999999988888899999999999999999999999999987655 6777888999999999
Q ss_pred cHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc-CCCccH-HHHHHHHHHHhhcCCh
Q 048394 368 MYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQF-HWRPMQ-VTVDTFFRFFEEEKDV 445 (485)
Q Consensus 368 ~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~ 445 (485)
++++|...|++..+.. +.+...|+.+...+...|++++|+..|++.+...... +...+. ..+...+..+...|++
T Consensus 448 ~~~eA~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~ 524 (615)
T TIGR00990 448 SIASSMATFRRCKKNF---PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF 524 (615)
T ss_pred CHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhH
Confidence 9999999999998763 3456788889999999999999999999998864110 000011 1122222334456999
Q ss_pred hhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcchhc
Q 048394 446 DGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDMR 484 (485)
Q Consensus 446 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 484 (485)
++|.++++++.+..|.+..++..++.++.+.|++++|++
T Consensus 525 ~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~ 563 (615)
T TIGR00990 525 IEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALK 563 (615)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 999999999999999999999999999999999999975
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=4.5e-22 Score=208.42 Aligned_cols=366 Identities=11% Similarity=0.022 Sum_probs=260.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCH---hHHH-----------
Q 048394 83 VRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNR---YTYG----------- 148 (485)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~----------- 148 (485)
...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++..+..|+. ..|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 344556677777777777776654 2355666666677777777777777777766633322 1111
Q ss_pred -HHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHH----------
Q 048394 149 -ALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTY---------- 217 (485)
Q Consensus 149 -~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~---------- 217 (485)
.....+.+.|++++|+..|+++.+.... +...+..+...+...|++++|++.|++..+.. +.+...+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 1233455667777777777777765432 44556666677777777777777777766542 1112222
Q ss_pred --------------------------------HHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhccc
Q 048394 218 --------------------------------IVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAEL 265 (485)
Q Consensus 218 --------------------------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 265 (485)
..+...+...|++++|++.|++..+ ..|.+...+..+...|.+.|+
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~--~~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA--LDPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 2233445668999999999999988 566677788889999999999
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhh---------------------------------
Q 048394 266 FEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKS--------------------------------- 312 (485)
Q Consensus 266 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------------------------- 312 (485)
+++|...++++.+..|.++..+..+...+...+++++|...++.+..
T Consensus 511 ~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 511 RSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 99999999999887776766665555455555555555555443311
Q ss_pred -------cCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 048394 313 -------TFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANA 385 (485)
Q Consensus 313 -------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 385 (485)
..+.+...+..+...+.+.|+.++|++.|+.+.+..+. +...+..++..|...|++++|...++.+.+..
T Consensus 591 eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-- 667 (1157)
T PRK11447 591 EAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-- 667 (1157)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--
Confidence 23346667778899999999999999999999998665 78889999999999999999999999887653
Q ss_pred cCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCc---cHHHHHHHHHHHhhcCChhhHHHHHHHHhhcC
Q 048394 386 SARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRP---MQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLN 459 (485)
Q Consensus 386 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 459 (485)
+.+...+..+..++...|++++|.+++++++..... .+| +...+..+...+...|++++|...|+++....
T Consensus 668 -p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~--~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 668 -NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS--QPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred -CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc--CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 334455667788889999999999999999886311 122 23456667788999999999999999997633
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.93 E-value=1.6e-21 Score=191.25 Aligned_cols=335 Identities=8% Similarity=-0.073 Sum_probs=274.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcc-cCCCHhHHHHHHHHH
Q 048394 76 KDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE-YAKNRYTYGALLNCY 154 (485)
Q Consensus 76 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~ 154 (485)
......++..+.+.|++++|..+++........ +...+..++.+....|++++|.+.|+++.. .+.+...+..+...+
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 444566777888999999999999998877633 344455556667779999999999999998 445567888889999
Q ss_pred HhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHH
Q 048394 155 CKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVE 234 (485)
Q Consensus 155 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 234 (485)
.+.|++++|...|++....... +...+..+...+...|++++|...++.+..... .+...+..+ ..+...|++++|.
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHH
Confidence 9999999999999999886533 566788899999999999999999998876532 223333333 3478899999999
Q ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhh----HHHHHHHh
Q 048394 235 RVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDA----VNRVWGIL 310 (485)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~ 310 (485)
..++.+.+ ....++...+..++.++...|++++|...++++....|.+...+..+...+...|++++ |...++++
T Consensus 198 ~~~~~~l~-~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLP-FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHh-cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 99999877 22233444555567888899999999999999999888889999999999999999986 89999999
Q ss_pred hhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCch
Q 048394 311 KSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFF 390 (485)
Q Consensus 311 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~ 390 (485)
....|.+...+..+...+...|++++|...+++..+..+. +...+..+..++.+.|++++|...|+++.+. .|+.
T Consensus 277 l~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~----~P~~ 351 (656)
T PRK15174 277 LQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE----KGVT 351 (656)
T ss_pred HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----Cccc
Confidence 9988888899999999999999999999999999987655 5677778899999999999999999999887 4544
Q ss_pred hH-HHHHHHHHHhcccHHHHHHHHHHHHHHh
Q 048394 391 KS-RESFMIYYLRSRQLDLALNEMEAALSEA 420 (485)
Q Consensus 391 ~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 420 (485)
.. +..+..++...|+.++|...|++..+..
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33 3345667889999999999999998875
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=1.2e-22 Score=190.32 Aligned_cols=301 Identities=14% Similarity=0.080 Sum_probs=223.2
Q ss_pred HHHHhhCCHHHHHHHHHhhcccC-CCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhCCC
Q 048394 119 DLTAKTNGIAAAEKYFNGLSEYA-KNRYTYGALLNCYCKELMTERALALFEKMDELKFLGN---TVAFNNLSTMYLRLGQ 194 (485)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~ 194 (485)
..+...|++++|...|.++.+.. .+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 34456678888888888887733 3455777788888888888888888888776532221 2456777778888888
Q ss_pred cccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCc---HHHHHHHHHHHHhcccHHHHHH
Q 048394 195 PEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCR---WTTYSNLASIYVKAELFEKAEL 271 (485)
Q Consensus 195 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~ 271 (485)
+++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+....++. ...+..++..+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 888888888887652 345667778888888888888888888888762211111 2234567777788888888888
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCC
Q 048394 272 ALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP-TNTSYLVLLQALAKLNAIDILKQCFEEWESRCSS 350 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 350 (485)
.|+++.+..|.+...+..++..+.+.|++++|.++++++....+. ...++..++.+|...|+.++|...++.+.+..
T Consensus 202 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-- 279 (389)
T PRK11788 202 LLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY-- 279 (389)
T ss_pred HHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 888888766767778888888888888888888888888876665 45667788888888888888888888887764
Q ss_pred CCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHh---cccHHHHHHHHHHHHHHhhhcCCCc
Q 048394 351 YDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLR---SRQLDLALNEMEAALSEAKQFHWRP 427 (485)
Q Consensus 351 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~ 427 (485)
|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.++++.+++++.+.+ +.|
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~----~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~----~~~ 351 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR----HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ----LKR 351 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh----CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH----HhC
Confidence 44455677888888888888888888888776 6777788777777664 457888888888888876 445
Q ss_pred cHH
Q 048394 428 MQV 430 (485)
Q Consensus 428 ~~~ 430 (485)
++.
T Consensus 352 ~p~ 354 (389)
T PRK11788 352 KPR 354 (389)
T ss_pred CCC
Confidence 444
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=1.8e-22 Score=189.12 Aligned_cols=296 Identities=14% Similarity=0.097 Sum_probs=251.9
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCcc---HHHHHHHHHHHHhc
Q 048394 151 LNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLD---NLTYIVWMQSYSHL 227 (485)
Q Consensus 151 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~ 227 (485)
...+...|++++|...|+++.+.+.. +..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 44567889999999999999987643 566889999999999999999999999987643222 35678889999999
Q ss_pred CCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHhcCChhh
Q 048394 228 NDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRD-----RKAYHFLISLYCNTSNLDA 302 (485)
Q Consensus 228 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~ 302 (485)
|++++|..+|+++.+ ..+.+..++..++.++.+.|++++|.+.++.+.+..+.+ ...+..++..+...|++++
T Consensus 121 g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 121 GLLDRAEELFLQLVD--EGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 999999999999988 466778899999999999999999999999998855433 2245677888899999999
Q ss_pred HHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 048394 303 VNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKR 382 (485)
Q Consensus 303 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 382 (485)
|...++++.+..+.+...+..++..+.+.|++++|.++++++.+.++.....+++.++.+|...|++++|...++++.+.
T Consensus 199 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 199 ARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999988777778888999999999999999999999988755444567888999999999999999999999887
Q ss_pred ccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhh---cCChhhHHHHHHHHhhcC
Q 048394 383 ANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEE---EKDVDGAEEFCKVLKSLN 459 (485)
Q Consensus 383 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~ 459 (485)
.|+...+..++..+.+.|++++|..+++++.+.. |+..++..++..+.. .|+.+++..+++++.+..
T Consensus 279 ----~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~------P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 279 ----YPGADLLLALAQLLEEQEGPEAAQALLREQLRRH------PSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred ----CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------cCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 5666677889999999999999999999998864 888888888876664 458889999998888643
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.92 E-value=2.7e-21 Score=193.84 Aligned_cols=398 Identities=10% Similarity=-0.031 Sum_probs=222.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhccc-CCCHhHHHHHH
Q 048394 73 TVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEY-AKNRYTYGALL 151 (485)
Q Consensus 73 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li 151 (485)
+.++..+...+......|+.++|++++....... +.+...+..+..++.+.|++++|.++|++.... +.+...+..++
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4555556666666666777777777766665422 234445666666666677777777777766663 33455566666
Q ss_pred HHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHh
Q 048394 152 NCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDID 231 (485)
Q Consensus 152 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 231 (485)
..+...|++++|...+++..+.... +.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...+..+
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChH
Confidence 6666677777777777776665322 334 6666666666777777777777766642 223334444555666666666
Q ss_pred HHHHHHHHHHhccCCCCcH------HHHHHHHHHHH-----hcccH---HHHHHHHHHHHhcCCCCh---HHH----HHH
Q 048394 232 GVERVFYEMCNECEDKCRW------TTYSNLASIYV-----KAELF---EKAELALKKLEEMKPRDR---KAY----HFL 290 (485)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~A~~~~~~~~~~~~~~~---~~~----~~l 290 (485)
.|++.++.+.. .|+. .....++..+. ..+++ ++|+..++.+.+..+.++ ..+ ...
T Consensus 168 ~Al~~l~~~~~----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 168 PALGAIDDANL----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred HHHHHHHhCCC----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 66666654433 1111 01111222211 11223 556666666654211111 111 111
Q ss_pred HHHHHhcCChhhHHHHHHHhhhcCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCC---CHHhHHHHHHHHHhc
Q 048394 291 ISLYCNTSNLDAVNRVWGILKSTFPP-TNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSY---DMRLADVIIRAYLQK 366 (485)
Q Consensus 291 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 366 (485)
+.++...|++++|...|+.+.+.+++ .......+...|...|++++|+..|+.+.+..+.. .......+..++...
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 22334556667777777766665533 22222334556666777777777777665543221 123344455556666
Q ss_pred CcHHHHHHHHHHHHhccc---------ccCCch---hHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHH
Q 048394 367 DMYEEAALIFNNAKKRAN---------ASARFF---KSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDT 434 (485)
Q Consensus 367 ~~~~~A~~~~~~~~~~~~---------~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (485)
|++++|..+++++.+... ...|+. ..+..+...+...|++++|+..++++... .+.+...+..
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-----~P~n~~l~~~ 398 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-----APGNQGLRID 398 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHH
Confidence 777777777766665420 001221 12334455566667777777777776665 3445556666
Q ss_pred HHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcchh
Q 048394 435 FFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDM 483 (485)
Q Consensus 435 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 483 (485)
+...+...|++++|++.++++++..|.+...+..++..+.+.|++++|.
T Consensus 399 lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~ 447 (765)
T PRK10049 399 YASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMD 447 (765)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHH
Confidence 6666666777777777777777766666667666666777777766664
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=1.1e-20 Score=185.39 Aligned_cols=360 Identities=8% Similarity=-0.027 Sum_probs=287.6
Q ss_pred HHcCChHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcc-cCCCHhHHHHHHHHHHhcCcHHHH
Q 048394 87 RKFGRYRHALEVIEWMESRK--MHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE-YAKNRYTYGALLNCYCKELMTERA 163 (485)
Q Consensus 87 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A 163 (485)
.++.+|+.-.-.|....+.. -.-+......++..+.+.|+.++|+.+++.... .+-+...+..++.+....|++++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHH
Confidence 44555555444444332110 011223344567777889999999999999888 444556677777788889999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhc
Q 048394 164 LALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNE 243 (485)
Q Consensus 164 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 243 (485)
...|+++....+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+..
T Consensus 96 ~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~- 172 (656)
T PRK15174 96 LQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ- 172 (656)
T ss_pred HHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH-
Confidence 9999999987644 66788889999999999999999999999852 33566788889999999999999999998876
Q ss_pred cCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHH
Q 048394 244 CEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKP-RDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYL 322 (485)
Q Consensus 244 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 322 (485)
..+.+...+..+ ..+...|++++|...++.+....+ ++...+..+..++...|++++|...++++....+.+...+.
T Consensus 173 -~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~ 250 (656)
T PRK15174 173 -EVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRR 250 (656)
T ss_pred -hCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 333444444444 347889999999999999887543 44455566678899999999999999999998888889999
Q ss_pred HHHHHHHhcCChhH----HHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHH
Q 048394 323 VLLQALAKLNAIDI----LKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMI 398 (485)
Q Consensus 323 ~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~ 398 (485)
.+...+...|++++ |...|+.+.+..+. +...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~---P~~~~a~~~La~ 326 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH---PDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHH
Confidence 99999999999986 89999999987665 78889999999999999999999999999874 334556777888
Q ss_pred HHHhcccHHHHHHHHHHHHHHhhhcCCCccH-HHHHHHHHHHhhcCChhhHHHHHHHHhhcCCC
Q 048394 399 YYLRSRQLDLALNEMEAALSEAKQFHWRPMQ-VTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCL 461 (485)
Q Consensus 399 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 461 (485)
.+.+.|++++|+..++++.... |+. ..+..+..++...|+.++|...|+++.+..|.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~------P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREK------GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC------ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 9999999999999999999864 554 33444567889999999999999999998776
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=8.6e-20 Score=183.03 Aligned_cols=397 Identities=8% Similarity=-0.082 Sum_probs=299.5
Q ss_pred CCcHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHH
Q 048394 57 GGSVTGALNAYIMEG--KTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYF 134 (485)
Q Consensus 57 ~~~~~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 134 (485)
.+...+++..+.+.. .+.+...+..+...+...|++++|.++|++..+.. +.+...+..+..++...|++++|...+
T Consensus 28 ~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l 106 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKA 106 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 455555555555443 34556678999999999999999999999988775 345666778888899999999999999
Q ss_pred Hhhcc-cCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCcc
Q 048394 135 NGLSE-YAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLD 213 (485)
Q Consensus 135 ~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 213 (485)
+++.+ .+.+.. +..+...+...|+.++|+..++++.+..+. +...+..+..++...|..++|++.++.... .|+
T Consensus 107 ~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~ 181 (765)
T PRK10049 107 KQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL---TPA 181 (765)
T ss_pred HHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHH
Confidence 99988 444566 888999999999999999999999997644 555667788888889999999998876654 233
Q ss_pred H------HHHHHHHHHHH-----hcCCH---hHHHHHHHHHHhccCCCCcH-HHHH----HHHHHHHhcccHHHHHHHHH
Q 048394 214 N------LTYIVWMQSYS-----HLNDI---DGVERVFYEMCNECEDKCRW-TTYS----NLASIYVKAELFEKAELALK 274 (485)
Q Consensus 214 ~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~~~~~~~~-~~~~----~l~~~~~~~~~~~~A~~~~~ 274 (485)
. .....++.... ..+++ ++|++.++.+.+.....|+. ..+. ..+..+...|++++|+..|+
T Consensus 182 ~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~ 261 (765)
T PRK10049 182 EKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQ 261 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 1 11222233222 12234 77888888888622222322 1111 11334467799999999999
Q ss_pred HHHhcCCCCh-HHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHccC
Q 048394 275 KLEEMKPRDR-KAYHFLISLYCNTSNLDAVNRVWGILKSTFPPT----NTSYLVLLQALAKLNAIDILKQCFEEWESRCS 349 (485)
Q Consensus 275 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 349 (485)
.+.+..++.+ .....+..+|...|++++|...|+++....+.+ ......+..++...|++++|.++++.+.+..+
T Consensus 262 ~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P 341 (765)
T PRK10049 262 RLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSP 341 (765)
T ss_pred HhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCC
Confidence 9988543221 223335779999999999999999988765443 34566677788999999999999999987632
Q ss_pred -----------CCC---HHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHH
Q 048394 350 -----------SYD---MRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEA 415 (485)
Q Consensus 350 -----------~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 415 (485)
.|+ ...+..+...+...|+.++|+.+++++.... +.+...+..+...+...|++++|++.+++
T Consensus 342 ~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~---P~n~~l~~~lA~l~~~~g~~~~A~~~l~~ 418 (765)
T PRK10049 342 PFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA---PGNQGLRIDYASVLQARGWPRAAENELKK 418 (765)
T ss_pred ceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 123 2345567788899999999999999998874 45567788888899999999999999999
Q ss_pred HHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHH
Q 048394 416 ALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYS 467 (485)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 467 (485)
++.. .+.+...+......+...|++++|+.+++++++..|.++.+..
T Consensus 419 al~l-----~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 419 AEVL-----EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHhh-----CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9997 4445677777888899999999999999999999998876644
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.89 E-value=4.6e-18 Score=167.45 Aligned_cols=416 Identities=11% Similarity=-0.009 Sum_probs=300.7
Q ss_pred CCcHHHHHHHHHHh-CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHH
Q 048394 57 GGSVTGALNAYIME-GKTVRK-DMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYF 134 (485)
Q Consensus 57 ~~~~~~~~~~~~~~-g~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 134 (485)
.++...+++.+.+. ...|+. .....++..+...|+.++|+..+++..... +........+...+...|++++|.++|
T Consensus 47 ~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely 125 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALW 125 (822)
T ss_pred CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55566666666544 233443 234488888888899999999999887221 122333333355777889999999999
Q ss_pred Hhhcc-cCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCcc
Q 048394 135 NGLSE-YAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLD 213 (485)
Q Consensus 135 ~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 213 (485)
+++.+ .+.|...+..++..+...++.++|++.++++.... |+...+..++..+...++..+|++.++++.+.. +-+
T Consensus 126 ~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n 202 (822)
T PRK14574 126 QSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTS 202 (822)
T ss_pred HHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCC
Confidence 99988 44456677788888899999999999999988754 555555444444444566656999999998863 345
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHH--HHHHHHHH---------hccc---HHHHHHHHHHHHh-
Q 048394 214 NLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTY--SNLASIYV---------KAEL---FEKAELALKKLEE- 278 (485)
Q Consensus 214 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~---------~~~~---~~~A~~~~~~~~~- 278 (485)
...+..+..+..+.|-...|.++..+-.. -+.+..... ...+.-.+ ...+ .+.|+.-++.+..
T Consensus 203 ~e~~~~~~~~l~~~~~~~~a~~l~~~~p~--~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~ 280 (822)
T PRK14574 203 EEVLKNHLEILQRNRIVEPALRLAKENPN--LVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTR 280 (822)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHhCcc--ccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhh
Confidence 66777788888899988888877765443 122211111 00011111 1122 3445555555554
Q ss_pred --cCCCCh----HHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHccC--
Q 048394 279 --MKPRDR----KAYHFLISLYCNTSNLDAVNRVWGILKSTFPP-TNTSYLVLLQALAKLNAIDILKQCFEEWESRCS-- 349 (485)
Q Consensus 279 --~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 349 (485)
..|+.. .+..-.+-++...|+..++++.++.+...+.+ ...+-..+.++|...+++++|..++..+.....
T Consensus 281 ~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~ 360 (822)
T PRK14574 281 WGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKT 360 (822)
T ss_pred ccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccc
Confidence 223221 22234566788899999999999999998877 888999999999999999999999999976531
Q ss_pred ---CCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhccc-----------ccCCchhH-HHHHHHHHHhcccHHHHHHHHH
Q 048394 350 ---SYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRAN-----------ASARFFKS-RESFMIYYLRSRQLDLALNEME 414 (485)
Q Consensus 350 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~ 414 (485)
.++......|.-+|...+++++|..+++++.+... ...||-.. +..++..+.-.|+..+|++.++
T Consensus 361 ~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le 440 (822)
T PRK14574 361 FRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLE 440 (822)
T ss_pred cCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 22344457789999999999999999999987311 00122222 3445677889999999999999
Q ss_pred HHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcchh
Q 048394 415 AALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDM 483 (485)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 483 (485)
++... -|-|......+...+...|.+.+|+..++.+....|.+..+....+.++...|+|.+|-
T Consensus 441 ~l~~~-----aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~ 504 (822)
T PRK14574 441 DLSST-----APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQME 504 (822)
T ss_pred HHHHh-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHH
Confidence 99887 56688899999999999999999999999999999999999999999999999999883
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.89 E-value=6.2e-18 Score=169.99 Aligned_cols=394 Identities=10% Similarity=-0.031 Sum_probs=274.2
Q ss_pred CCHHHHHHH-HHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-hCCHHHHHHHHHhhcccCCCHhHHHHHH
Q 048394 74 VRKDMLEYC-VRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAK-TNGIAAAEKYFNGLSEYAKNRYTYGALL 151 (485)
Q Consensus 74 ~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~li 151 (485)
|++..+... .+.|.+.|++++|++++..+.+.+. .+......+..+|.. .++ +.+..+++. ....+...+..++
T Consensus 179 ~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~--~lk~d~~l~~ala 254 (987)
T PRK09782 179 PEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ--GIFTDPQSRITYA 254 (987)
T ss_pred CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch--hcccCHHHHHHHH
Confidence 345545555 8888899999999999999988873 445545666667766 366 777777553 2335778888888
Q ss_pred HHHHhcCcHHHHHHHHHHHHhCCCC-CChhhH------------------------------HHHHHHH-----------
Q 048394 152 NCYCKELMTERALALFEKMDELKFL-GNTVAF------------------------------NNLSTMY----------- 189 (485)
Q Consensus 152 ~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~~~------------------------------~~l~~~~----------- 189 (485)
..|.+.|+.++|.++++++...... |...+| -.++..+
T Consensus 255 ~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (987)
T PRK09782 255 TALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQK 334 (987)
T ss_pred HHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 9999999999999888887654322 222222 0001111
Q ss_pred ----------------------------------------------------HhCCCcccHHHHHHHHHHc-C-CCccHH
Q 048394 190 ----------------------------------------------------LRLGQPEKVRPLVNQMKQR-N-ISLDNL 215 (485)
Q Consensus 190 ----------------------------------------------------~~~g~~~~a~~~~~~~~~~-~-~~p~~~ 215 (485)
.+.|+.++|.++|+..... + -.++..
T Consensus 335 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 414 (987)
T PRK09782 335 LLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQT 414 (987)
T ss_pred HhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHH
Confidence 2234445555555554431 0 112223
Q ss_pred HHHHHHHHHHhcCC---HhHHHH----------------------HHHHHHhcc-CCCC--cHHHHHHHHHHHHhcccHH
Q 048394 216 TYIVWMQSYSHLND---IDGVER----------------------VFYEMCNEC-EDKC--RWTTYSNLASIYVKAELFE 267 (485)
Q Consensus 216 ~~~~l~~~~~~~~~---~~~a~~----------------------~~~~~~~~~-~~~~--~~~~~~~l~~~~~~~~~~~ 267 (485)
...-++..|.+.+. ...+.. .++...... ..++ +...|..+..++.. ++.+
T Consensus 415 l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~ 493 (987)
T PRK09782 415 LMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPG 493 (987)
T ss_pred HHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcH
Confidence 33355555555544 122211 122221111 2344 67777778888776 7888
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 048394 268 KAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESR 347 (485)
Q Consensus 268 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 347 (485)
+|...+.+.....|. ......+...+...|++++|...|+++....+. ...+..+...+.+.|+.++|.+.++...+.
T Consensus 494 eAi~a~~~Al~~~Pd-~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l 571 (987)
T PRK09782 494 VALYAWLQAEQRQPD-AWQHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR 571 (987)
T ss_pred HHHHHHHHHHHhCCc-hHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 899988887776553 333444555567899999999999987665333 344567778888999999999999999887
Q ss_pred cCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCc
Q 048394 348 CSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRP 427 (485)
Q Consensus 348 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 427 (485)
.+. +...+..+.......|++++|...+++..+. .|+...|..+...+.+.|++++|+..+++.+.. .+.
T Consensus 572 ~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l----~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-----~Pd 641 (987)
T PRK09782 572 GLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI----APSANAYVARATIYRQRHNVPAAVSDLRAALEL-----EPN 641 (987)
T ss_pred CCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCC
Confidence 533 3333334444455669999999999999877 667788888889999999999999999999997 445
Q ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcchhc
Q 048394 428 MQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDMR 484 (485)
Q Consensus 428 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 484 (485)
+...+..+..++...|++++|...++++.+..|.++.++..++.++...|++++|++
T Consensus 642 ~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~ 698 (987)
T PRK09782 642 NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH 698 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 667788888899999999999999999999999999999999999999999998864
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.2e-17 Score=157.96 Aligned_cols=391 Identities=14% Similarity=0.077 Sum_probs=247.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhhCCHHHHHHHHHhhcccCCC-HhHHHHHH
Q 048394 75 RKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTD--FAVYLDLTAKTNGIAAAEKYFNGLSEYAKN-RYTYGALL 151 (485)
Q Consensus 75 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li 151 (485)
-+..|..+.+++...|+++.|...|.+..+.. ++..+ +--+.+.+.+.|+++.+...|+.+....|| ..+...|.
T Consensus 306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG 383 (1018)
T KOG2002|consen 306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILG 383 (1018)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 34567777888888888888888888776654 33333 344667788888888888888887773343 44555555
Q ss_pred HHHHhcC----cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHH----HcCCCccHHHHHHHHHH
Q 048394 152 NCYCKEL----MTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMK----QRNISLDNLTYIVWMQS 223 (485)
Q Consensus 152 ~~~~~~~----~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~p~~~~~~~l~~~ 223 (485)
..|...+ ..+.|..++.+..+..+. |...|-.+...+-.. ++..++..|.... ..+..+.+...|.+...
T Consensus 384 ~Lya~~~~~~~~~d~a~~~l~K~~~~~~~-d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvasl 461 (1018)
T KOG2002|consen 384 CLYAHSAKKQEKRDKASNVLGKVLEQTPV-DSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASL 461 (1018)
T ss_pred hHHHhhhhhhHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Confidence 5555543 445555555555544322 444554444443322 2222243333322 23333444555555555
Q ss_pred HHhcCCHhHHHHHHHHHHhcc------------------------------------------CCCCcHHHHHHHHHHHH
Q 048394 224 YSHLNDIDGVERVFYEMCNEC------------------------------------------EDKCRWTTYSNLASIYV 261 (485)
Q Consensus 224 ~~~~~~~~~a~~~~~~~~~~~------------------------------------------~~~~~~~~~~~l~~~~~ 261 (485)
+...|++..|...|....... ..|--...|.-++....
T Consensus 462 hf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~ 541 (1018)
T KOG2002|consen 462 HFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMAR 541 (1018)
T ss_pred HHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHH
Confidence 555555555555555444310 22222223323332222
Q ss_pred hcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC--ChhhHHHHHHHHHh---------
Q 048394 262 KAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP--TNTSYLVLLQALAK--------- 330 (485)
Q Consensus 262 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~--------- 330 (485)
..+...+|...++........++..+..+...+.+...+..|..-|+.+.+.... |..+...|.+.|..
T Consensus 542 ~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ 621 (1018)
T KOG2002|consen 542 DKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNP 621 (1018)
T ss_pred hccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccCh
Confidence 3355566666666666666666777777777777777777777766655544333 55555566665542
Q ss_pred ---cCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHH
Q 048394 331 ---LNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLD 407 (485)
Q Consensus 331 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 407 (485)
.+..+.|+++|.++++..+. |...-|.+.-+++..|++.+|..+|.+..+.. .....+|..+.+.|+..|++.
T Consensus 622 ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~---~~~~dv~lNlah~~~e~~qy~ 697 (1018)
T KOG2002|consen 622 EKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREAT---SDFEDVWLNLAHCYVEQGQYR 697 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHH---hhCCceeeeHHHHHHHHHHHH
Confidence 24567788888888887666 77777888888888888888888888888764 335567778888888888888
Q ss_pred HHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 048394 408 LALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAA 476 (485)
Q Consensus 408 ~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 476 (485)
.|+++|+...+.- ....+..+...|.+++.+.|.+.+|.+.+..+....|.|+.....++-+..+.
T Consensus 698 ~AIqmYe~~lkkf---~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 698 LAIQMYENCLKKF---YKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKL 763 (1018)
T ss_pred HHHHHHHHHHHHh---cccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHH
Confidence 8888888887763 12346677778888888888888888888888888888877766666655443
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=5e-16 Score=153.21 Aligned_cols=398 Identities=11% Similarity=-0.015 Sum_probs=291.2
Q ss_pred CcHHHHHHHHHHhCCCCCHHHHHH--HHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHH
Q 048394 58 GSVTGALNAYIMEGKTVRKDMLEY--CVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFN 135 (485)
Q Consensus 58 ~~~~~~~~~~~~~g~~~~~~~~~~--l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 135 (485)
+...+++..+.+.-.+-+...+.. +...+...|++++|+++|+++.+.. +-+...+..++..+...++.++|++.++
T Consensus 82 G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~ 160 (822)
T PRK14574 82 GRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQAT 160 (822)
T ss_pred CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 444445555544442223333333 3567888899999999999998886 3456677777888999999999999999
Q ss_pred hhcccCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHH
Q 048394 136 GLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNL 215 (485)
Q Consensus 136 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 215 (485)
++....|+...+..++..+...++..+|++.++++.+..+. +...+..++.++.+.|-...|.++..+-.+. +.+...
T Consensus 161 ~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~ 238 (822)
T PRK14574 161 ELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHY 238 (822)
T ss_pred HhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHH
Confidence 99997788777766655555567776799999999998644 6777888999999999999998877664432 112111
Q ss_pred HH------HHHHHHH-H----hcCC---HhHHHHHHHHHHhccCC-CCcHHH----HHHHHHHHHhcccHHHHHHHHHHH
Q 048394 216 TY------IVWMQSY-S----HLND---IDGVERVFYEMCNECED-KCRWTT----YSNLASIYVKAELFEKAELALKKL 276 (485)
Q Consensus 216 ~~------~~l~~~~-~----~~~~---~~~a~~~~~~~~~~~~~-~~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~ 276 (485)
-+ ..+++.- . ...+ .+.|+.-++.+....+. |+.... ..-.+-++...+++.++++.++.+
T Consensus 239 ~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l 318 (822)
T PRK14574 239 RQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAM 318 (822)
T ss_pred HHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 11 1111110 0 1112 34555566665542233 322222 223455677889999999999999
Q ss_pred Hh-cCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCC-----C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHccC
Q 048394 277 EE-MKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFP-----P-TNTSYLVLLQALAKLNAIDILKQCFEEWESRCS 349 (485)
Q Consensus 277 ~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 349 (485)
.. ..+-...+-..+.++|...+++++|..++..+....+ + +......|.-++...+++++|..+++.+.+..+
T Consensus 319 ~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 319 EAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred hhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 87 3344567888999999999999999999999876542 1 344457889999999999999999999987422
Q ss_pred -----------CCC---HHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHH
Q 048394 350 -----------SYD---MRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEA 415 (485)
Q Consensus 350 -----------~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 415 (485)
.|| ...+..++..+.-.|+..+|++.++++.... +-|......+...+...|.+.+|.+.++.
T Consensus 399 ~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a---P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~ 475 (822)
T PRK14574 399 YQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA---PANQNLRIALASIYLARDLPRKAEQELKA 475 (822)
T ss_pred cEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 122 2234456777889999999999999998774 56777788888999999999999999987
Q ss_pred HHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHH
Q 048394 416 ALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAY 466 (485)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 466 (485)
.... .+-+..+......++...+++.+|..+.+.+.+..|.+..+-
T Consensus 476 a~~l-----~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 476 VESL-----APRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred Hhhh-----CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 7776 344567778888899999999999999999999999877554
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.84 E-value=3.5e-16 Score=157.48 Aligned_cols=381 Identities=10% Similarity=-0.055 Sum_probs=279.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH--HhhCCHHHHHHHHHhhcc-cCCCHhHHHHHHHHHHhc
Q 048394 81 YCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLT--AKTNGIAAAEKYFNGLSE-YAKNRYTYGALLNCYCKE 157 (485)
Q Consensus 81 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~ 157 (485)
.++..+.+.++++.+.++.+ ..|.... ..++.. ...+...++.+.+..+-+ .+-+.....-+.....+.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~ 389 (987)
T PRK09782 318 ATLPVLLKEGQYDAAQKLLA------TLPANEM--LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQN 389 (987)
T ss_pred HHHHHHHhccHHHHHHHHhc------CCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 34666777888886665522 2233332 233322 233566666666666655 344666666666667889
Q ss_pred CcHHHHHHHHHHHHhC-C-CCCChhhHHHHHHHHHhCCCcc---cHHHH----------------------HHHHHHc-C
Q 048394 158 LMTERALALFEKMDEL-K-FLGNTVAFNNLSTMYLRLGQPE---KVRPL----------------------VNQMKQR-N 209 (485)
Q Consensus 158 ~~~~~A~~~~~~m~~~-~-~~p~~~~~~~l~~~~~~~g~~~---~a~~~----------------------~~~~~~~-~ 209 (485)
|+.++|.++|+..... + -.++....+-++..|.+.+... ++..+ +...... +
T Consensus 390 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 469 (987)
T PRK09782 390 GQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLG 469 (987)
T ss_pred ccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcc
Confidence 9999999999988762 1 2223334456777777776522 22222 1112111 1
Q ss_pred C-Cc--cHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHH
Q 048394 210 I-SL--DNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKA 286 (485)
Q Consensus 210 ~-~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 286 (485)
. ++ +...|..+..++.. ++.++|...+.+... .. |+......+...+...|++++|...++++....+ +...
T Consensus 470 ~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~--~~-Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p-~~~a 544 (987)
T PRK09782 470 DMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ--RQ-PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDM-SNED 544 (987)
T ss_pred cCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH--hC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-CcHH
Confidence 1 33 56677777777766 889999998888776 22 4444444455666789999999999999766544 4556
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhc
Q 048394 287 YHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQK 366 (485)
Q Consensus 287 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 366 (485)
+..+..++.+.|+.++|...+++..+..+.....+..+.......|++++|...+++..+.. |+...+..+..++.+.
T Consensus 545 ~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~l 622 (987)
T PRK09782 545 LLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQR 622 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHC
Confidence 77788889999999999999999988876665555555556667799999999999998875 4678888999999999
Q ss_pred CcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChh
Q 048394 367 DMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVD 446 (485)
Q Consensus 367 ~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 446 (485)
|++++|...+++..+.. +.+...++.+...+...|++++|+..+++.++. .+-+...+..+..++...|+++
T Consensus 623 G~~deA~~~l~~AL~l~---Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-----~P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 623 HNVPAAVSDLRAALELE---PNNSNYQAALGYALWDSGDIAQSREMLERAHKG-----LPDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred CCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHCCCHH
Confidence 99999999999999884 445567777888899999999999999999997 4557788999999999999999
Q ss_pred hHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcchhc
Q 048394 447 GAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDMR 484 (485)
Q Consensus 447 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 484 (485)
+|+..++++.+..|.+..+....++...+..+++.|.+
T Consensus 695 eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 695 ATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHE 732 (987)
T ss_pred HHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999998888888888888887776653
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=4.6e-16 Score=134.33 Aligned_cols=290 Identities=18% Similarity=0.219 Sum_probs=181.4
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH--hhCCH-------------------------HHHHHHHHhhc
Q 048394 86 LRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTA--KTNGI-------------------------AAAEKYFNGLS 138 (485)
Q Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~-------------------------~~a~~~~~~~~ 138 (485)
+...|...++.-+|+.|.+.|++.+...-..++...+ ...++ +-|.-+|+..
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~- 203 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETL- 203 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhc-
Confidence 4566777888888888887777666665555444322 11111 1112222222
Q ss_pred ccCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHH
Q 048394 139 EYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYI 218 (485)
Q Consensus 139 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 218 (485)
+.+..+|..+|.++++-...+.|.+++++-.....+.+..+||.+|.+-.-.. ..+++.+|....+.||..|+|
T Consensus 204 --PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 204 --PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred --CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHH
Confidence 23566777777777777777777777777776666667777777776544322 266777777777777777777
Q ss_pred HHHHHHHhcCCHhH----HHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHH-HHHHHHHHHh---------cCCCCh
Q 048394 219 VWMQSYSHLNDIDG----VERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEK-AELALKKLEE---------MKPRDR 284 (485)
Q Consensus 219 ~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~---------~~~~~~ 284 (485)
+++++..+.|+++. |.+++.+|.+ -|..|+..+|..++..+++.++..+ |..++..+.. ..|.+.
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKe-iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKE-IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHH-hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 77777777776654 4455666666 6777777777777777777766533 3333333332 233455
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhhc------CCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhH
Q 048394 285 KAYHFLISLYCNTSNLDAVNRVWGILKST------FPP--TNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLA 356 (485)
Q Consensus 285 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 356 (485)
..|...+..|.+..+.+.|.++..-+... |+. ...-|..+....|.....+.-...|+.|.-.-.-|+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 66666777777777777776665554432 111 2233455666666666677777777777666666666666
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcc
Q 048394 357 DVIIRAYLQKDMYEEAALIFNNAKKRA 383 (485)
Q Consensus 357 ~~l~~~~~~~~~~~~A~~~~~~~~~~~ 383 (485)
..++++..-.|.++-.-++|..++..|
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 666776666666666666666665554
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=5.1e-17 Score=141.19 Aligned_cols=348 Identities=15% Similarity=0.069 Sum_probs=230.5
Q ss_pred HHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhH--------HHHHHH----
Q 048394 121 TAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAF--------NNLSTM---- 188 (485)
Q Consensus 121 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~--------~~l~~~---- 188 (485)
+.+.|+++.|+..|+...+..||..+-..|+-++.--|+-++..+.|.+|...-..||..-| ..|+.-
T Consensus 286 fiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n 365 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN 365 (840)
T ss_pred EEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh
Confidence 34678888888888888887788776666666666778888888999888765433333222 111111
Q ss_pred -----HHhCC--CcccHHHHHHHHHHcCCCccHH-------------HH--------HHHHHHHHhcCCHhHHHHHHHHH
Q 048394 189 -----YLRLG--QPEKVRPLVNQMKQRNISLDNL-------------TY--------IVWMQSYSHLNDIDGVERVFYEM 240 (485)
Q Consensus 189 -----~~~~g--~~~~a~~~~~~~~~~~~~p~~~-------------~~--------~~l~~~~~~~~~~~~a~~~~~~~ 240 (485)
.-+.+ +-++++-.--++..--+.|+-. .+ ..-...+.+.|+++.|+++++-.
T Consensus 366 d~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~ 445 (840)
T KOG2003|consen 366 DHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVF 445 (840)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHH
Confidence 11111 0111111111111100111100 00 01123466777777777777665
Q ss_pred HhccC-----------------------------------CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChH
Q 048394 241 CNECE-----------------------------------DKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRK 285 (485)
Q Consensus 241 ~~~~~-----------------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 285 (485)
.+... ...+......-.+.....|++++|.+.+++....+.....
T Consensus 446 ~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e 525 (840)
T KOG2003|consen 446 EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE 525 (840)
T ss_pred HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH
Confidence 54111 1111111111111222357888888888887765444455
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHh
Q 048394 286 AYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQ 365 (485)
Q Consensus 286 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 365 (485)
....+.-.+-..|++++|++.|-++...-..+..+...+.+.|....+..+|++++.+.... +..|+.+...|...|-+
T Consensus 526 alfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydq 604 (840)
T KOG2003|consen 526 ALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQ 604 (840)
T ss_pred HHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhc
Confidence 55556666778888899988888876655557777888888888888888998888877665 33478888999999999
Q ss_pred cCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHH-HHhhcCC
Q 048394 366 KDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFR-FFEEEKD 444 (485)
Q Consensus 366 ~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~ 444 (485)
.|+-..|.+.+-.--+. . +-+..+...|...|....-+++|+.+|++..- ++|+..-|..++. ++.+.|+
T Consensus 605 egdksqafq~~ydsyry-f--p~nie~iewl~ayyidtqf~ekai~y~ekaal------iqp~~~kwqlmiasc~rrsgn 675 (840)
T KOG2003|consen 605 EGDKSQAFQCHYDSYRY-F--PCNIETIEWLAAYYIDTQFSEKAINYFEKAAL------IQPNQSKWQLMIASCFRRSGN 675 (840)
T ss_pred ccchhhhhhhhhhcccc-c--CcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh------cCccHHHHHHHHHHHHHhccc
Confidence 99999888876443322 2 55677888888888899999999999998765 5699999988884 5577899
Q ss_pred hhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCC
Q 048394 445 VDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGK 478 (485)
Q Consensus 445 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 478 (485)
+..|..+|+......|.|......|+..+...|-
T Consensus 676 yqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 676 YQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999999999999999999999888776664
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.81 E-value=2.7e-15 Score=136.23 Aligned_cols=397 Identities=12% Similarity=0.052 Sum_probs=295.5
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhhCCHHHHHHHHHhhcc-c
Q 048394 64 LNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHF--SYTDFAVYLDLTAKTNGIAAAEKYFNGLSE-Y 140 (485)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~ 140 (485)
+..+...|+..+...+..-...|-..|..--+..+.......|+.- -..||+.-.+.|.+.+.++-|..+|....+ .
T Consensus 467 l~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf 546 (913)
T KOG0495|consen 467 LSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF 546 (913)
T ss_pred HHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc
Confidence 3455667888898888888888888888888888888877776542 234677777888888889999999988888 5
Q ss_pred CCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHH
Q 048394 141 AKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVW 220 (485)
Q Consensus 141 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 220 (485)
+.+...|...+..--..|..++-..+|++....-.+ ....|-.....+...|+...|..++.+..+.. +.+...|...
T Consensus 547 p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaa 624 (913)
T KOG0495|consen 547 PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAA 624 (913)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 556678888777777788888888888888876433 55566666777778888888888888887763 3467778888
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCh
Q 048394 221 MQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNL 300 (485)
Q Consensus 221 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 300 (485)
+.....+.+++.|..+|.+... ..++..+|..-+....-.++.++|.+++++..+..|.-...|..+.+.+-+.++.
T Consensus 625 vKle~en~e~eraR~llakar~---~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 625 VKLEFENDELERARDLLAKARS---ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred HHHhhccccHHHHHHHHHHHhc---cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHH
Confidence 8888888888889888888866 6677777766777777778888888888888888887788888888888888888
Q ss_pred hhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 048394 301 DAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAK 380 (485)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 380 (485)
+.|...|..-.+..|.....|..+...-.+.|.+-.|..+++...-.+++ +...|-..|++-.+.|+.+.|..+..+.+
T Consensus 702 e~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 702 EMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred HHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888877777777788888888888888888888888888877776 78888888888888888888888887776
Q ss_pred hcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCC
Q 048394 381 KRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNC 460 (485)
Q Consensus 381 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 460 (485)
+.- +.+...|..-|...-+.++-..+.+.+++ ..-|+.+...+...+....+++.|.++|.+.++.+|
T Consensus 781 Qec---p~sg~LWaEaI~le~~~~rkTks~DALkk---------ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 781 QEC---PSSGLLWAEAIWLEPRPQRKTKSIDALKK---------CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred HhC---CccchhHHHHHHhccCcccchHHHHHHHh---------ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 651 22333454444444444443333332222 335555566666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHhCC
Q 048394 461 LDFSAYSLLIKTYIAAGK 478 (485)
Q Consensus 461 ~~~~~~~~l~~~~~~~g~ 478 (485)
.+-.+|..+...+.+.|.
T Consensus 849 d~GD~wa~fykfel~hG~ 866 (913)
T KOG0495|consen 849 DNGDAWAWFYKFELRHGT 866 (913)
T ss_pred ccchHHHHHHHHHHHhCC
Confidence 666666666666666663
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.78 E-value=2.2e-14 Score=130.47 Aligned_cols=378 Identities=11% Similarity=0.002 Sum_probs=322.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcc-cCCCHhHHHHHHHHH
Q 048394 76 KDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE-YAKNRYTYGALLNCY 154 (485)
Q Consensus 76 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~ 154 (485)
..++..-...|.+.+.++-|..+|....+.- +-+...|......--..|..+.-..+|++... .+.....|......+
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEK 594 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHH
Confidence 3456666777888899999999999988764 34666777777777778999999999999988 555667788888888
Q ss_pred HhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHH
Q 048394 155 CKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVE 234 (485)
Q Consensus 155 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 234 (485)
...|++..|..++.+..+.... +...|-..+.....+.++++|..+|.+.... .|+...|.--+...--.+..++|.
T Consensus 595 w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHH
Confidence 9999999999999999987755 7788999999999999999999999998874 688888888888778889999999
Q ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcC
Q 048394 235 RVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTF 314 (485)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 314 (485)
+++++..+ .++.-...|-.+.+.+-+.++.+.|.+.|..-.+..|.....|..+...--+.|.+-.|..++++..-.+
T Consensus 672 rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 672 RLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 99999998 6777788888999999999999999999998877888888999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHH
Q 048394 315 PPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRE 394 (485)
Q Consensus 315 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~ 394 (485)
|.+...|...|..-.+.|..+.|..+..+..+..+. +...|..-|....+.++-......+++. .-|.....
T Consensus 750 Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~-sg~LWaEaI~le~~~~rkTks~DALkkc-------e~dphVll 821 (913)
T KOG0495|consen 750 PKNALLWLESIRMELRAGNKEQAELLMAKALQECPS-SGLLWAEAIWLEPRPQRKTKSIDALKKC-------EHDPHVLL 821 (913)
T ss_pred CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cchhHHHHHHhccCcccchHHHHHHHhc-------cCCchhHH
Confidence 999999999999999999999999999999887655 7888888888877777755554444432 44556666
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHH
Q 048394 395 SFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKT 472 (485)
Q Consensus 395 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 472 (485)
.+...|-...++++|.++|.+.++.+ +....+|..+...+.+.|.-+.-.+++.+.....|..-..|.....-
T Consensus 822 aia~lfw~e~k~~kar~Wf~Ravk~d-----~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~ 894 (913)
T KOG0495|consen 822 AIAKLFWSEKKIEKAREWFERAVKKD-----PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKD 894 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC-----CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhh
Confidence 77788889999999999999999984 45678999999999999999999999999999988877777666543
No 30
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.78 E-value=3.9e-14 Score=134.56 Aligned_cols=411 Identities=14% Similarity=0.075 Sum_probs=305.5
Q ss_pred HHHHHHHHHH--hCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhhCCHHHHHHHHH
Q 048394 60 VTGALNAYIM--EGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRK--MHFSYTDFAVYLDLTAKTNGIAAAEKYFN 135 (485)
Q Consensus 60 ~~~~~~~~~~--~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 135 (485)
+..+...+.. ..-+++...+.--.......+++..|+.+|....... .+||+.. .+..++.+.|+.+.|...|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence 4455444432 3345555555555555566789999999999975543 3455432 23456679999999999999
Q ss_pred hhcccCCC-HhHHHHHHHHHHhc---CcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCC
Q 048394 136 GLSEYAKN-RYTYGALLNCYCKE---LMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNIS 211 (485)
Q Consensus 136 ~~~~~~~~-~~~~~~li~~~~~~---~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 211 (485)
+..+..|+ +.++..|...-... ..+..+..++...-..+.. |+...+.|.+.|...|+++.++.+...+......
T Consensus 224 ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 99996553 33343333332333 3456677777777655544 7788999999999999999999999998875311
Q ss_pred --ccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCc-HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHH
Q 048394 212 --LDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCR-WTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYH 288 (485)
Q Consensus 212 --p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 288 (485)
.-...|-.+.++|-..|++++|..+|.+..+ ..+.+ ...+.-++..|.+.|+.+.+...|+.+.+..|.+..+..
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k--~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~ 380 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK--ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMK 380 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc--cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHH
Confidence 1234577799999999999999999999887 22222 445566899999999999999999999998888999999
Q ss_pred HHHHHHHhcC----ChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH----HccCCCCHHhHHHHH
Q 048394 289 FLISLYCNTS----NLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWE----SRCSSYDMRLADVII 360 (485)
Q Consensus 289 ~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~ 360 (485)
.+...|...+ ..+.|..++.+.....+.+...|..+...+....-+ .++..|..+. ..+..+.+...|.+.
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNva 459 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVA 459 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHH
Confidence 9999998875 567888888888888877999998888877665444 3377766543 445557889999999
Q ss_pred HHHHhcCcHHHHHHHHHHHHhc---ccccCCchh------HHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHH
Q 048394 361 RAYLQKDMYEEAALIFNNAKKR---ANASARFFK------SRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVT 431 (485)
Q Consensus 361 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 431 (485)
..+...|++++|...|+..... .. .++.. +--.+...+-..++.+.|.+.|..++... +--...
T Consensus 460 slhf~~g~~~~A~~~f~~A~~~~~~~~--n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-----p~YId~ 532 (1018)
T KOG2002|consen 460 SLHFRLGNIEKALEHFKSALGKLLEVA--NKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-----PGYIDA 532 (1018)
T ss_pred HHHHHhcChHHHHHHHHHHhhhhhhhc--CccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-----chhHHH
Confidence 9999999999999999988765 12 34432 22234455567789999999999999973 333445
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcchh
Q 048394 432 VDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDM 483 (485)
Q Consensus 432 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 483 (485)
|..++......++..+|...++.+.+.+..++.++..+++.+.+..+|..|-
T Consensus 533 ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 533 YLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAK 584 (1018)
T ss_pred HHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccc
Confidence 5555544455678899999999999999999999999999999888776654
No 31
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.5e-14 Score=124.96 Aligned_cols=353 Identities=13% Similarity=0.061 Sum_probs=219.0
Q ss_pred CCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhH---HH
Q 048394 108 HFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAF---NN 184 (485)
Q Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~---~~ 184 (485)
..|...+-.....+.+.|....|+..|....... +..|.+.+....-..+.+.+..+ ...+ ..| ..| -.
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~--P~~W~AWleL~~lit~~e~~~~l----~~~l-~~~-~h~M~~~F 232 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY--PWFWSAWLELSELITDIEILSIL----VVGL-PSD-MHWMKKFF 232 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC--CcchHHHHHHHHhhchHHHHHHH----HhcC-ccc-chHHHHHH
Confidence 3444443333445566788888888887766521 23333333322222333322222 1111 111 111 12
Q ss_pred HHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCC---cHHHHHHHHHHHH
Q 048394 185 LSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKC---RWTTYSNLASIYV 261 (485)
Q Consensus 185 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~ 261 (485)
+..++....+.+++.+-.+.....|++.+...-+....+.....++++|+.+|+++.+ ..|. |..+|..++-.-
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~k--nDPYRl~dmdlySN~LYv~- 309 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRK--NDPYRLDDMDLYSNVLYVK- 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh--cCCCcchhHHHHhHHHHHH-
Confidence 3344555556677777777777777655555555555566677788888888888877 3443 344444443322
Q ss_pred hcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 048394 262 KAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCF 341 (485)
Q Consensus 262 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 341 (485)
. +-.+---+-+...+++.--+.|...+.+-|.-.++.++|...|++..+.++....+|+.+..-|...++...|.+-+
T Consensus 310 -~-~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 310 -N-DKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred -h-hhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 1 11111112222222444456677777777777777788888888877777777777777788888888888888888
Q ss_pred HHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhh
Q 048394 342 EEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAK 421 (485)
Q Consensus 342 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 421 (485)
+...+-++. |-..|-.|.++|.-.+...-|+-+|++..+.. +.|...|..|.+.|.+.++.++|++.|.+....+
T Consensus 388 RrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k---PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~- 462 (559)
T KOG1155|consen 388 RRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK---PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG- 462 (559)
T ss_pred HHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-
Confidence 877776655 77777778888877777777888887777663 4566777777788888888888888888777763
Q ss_pred hcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhc-------CCCCHHHHHHHHHHHHHhCCCcch
Q 048394 422 QFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSL-------NCLDFSAYSLLIKTYIAAGKLASD 482 (485)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A 482 (485)
..+...+..+...+.+.++.++|...|++.++. ++....+..-|+.-+.+.+++++|
T Consensus 463 ----dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~A 526 (559)
T KOG1155|consen 463 ----DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEA 526 (559)
T ss_pred ----ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHH
Confidence 335567777777777788888887777777662 222334444577777777777766
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.77 E-value=5.5e-18 Score=150.38 Aligned_cols=261 Identities=18% Similarity=0.127 Sum_probs=104.9
Q ss_pred HHHHHHHhhCCHHHHHHHHHhhc-cc-CC-CHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhC
Q 048394 116 VYLDLTAKTNGIAAAEKYFNGLS-EY-AK-NRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRL 192 (485)
Q Consensus 116 ~l~~~~~~~g~~~~a~~~~~~~~-~~-~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 192 (485)
.+...+.+.|++++|+++++... .. +| |...|..+...+...++++.|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44667777888888888885443 33 23 3445555666666778888888888888776644 55566666666 678
Q ss_pred CCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHH
Q 048394 193 GQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELA 272 (485)
Q Consensus 193 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 272 (485)
+++++|.+++.+..+.. ++...+..++..+.+.++++++..+++.+......+.+...|..+...+.+.|+.++|+..
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888887765542 4566667777778888888888888888776344566777788888888888888888888
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCC
Q 048394 273 LKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYD 352 (485)
Q Consensus 273 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 352 (485)
+++..+..|.+......++..+...|+.+++..+++......+.++..+..+..++...|+.++|...|++..+..+. |
T Consensus 169 ~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-d 247 (280)
T PF13429_consen 169 YRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD-D 247 (280)
T ss_dssp HHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc-c
Confidence 888888888788888888888888888888888888777776666777778888888888888888888888776544 7
Q ss_pred HHhHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 048394 353 MRLADVIIRAYLQKDMYEEAALIFNNAKK 381 (485)
Q Consensus 353 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 381 (485)
+.....+..++...|+.++|..+..+..+
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 77777788888888888888887776543
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=3.8e-14 Score=122.67 Aligned_cols=241 Identities=17% Similarity=0.173 Sum_probs=142.2
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcc--cCCCHhHHHH
Q 048394 72 KTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE--YAKNRYTYGA 149 (485)
Q Consensus 72 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~ 149 (485)
.|.+..++..++.++|+.-..+.|.+++++-.....+.+..+||.+|.+-.-..+ .+++.+|.. ..||..|+|+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHH
Confidence 4556667777777777777777777777776665556677777777665432222 445555555 5677777777
Q ss_pred HHHHHHhcCcHHH----HHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCccc-HHHHHHHHHH----cCCCc----cHHH
Q 048394 150 LLNCYCKELMTER----ALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEK-VRPLVNQMKQ----RNISL----DNLT 216 (485)
Q Consensus 150 li~~~~~~~~~~~----A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~----~~~~p----~~~~ 216 (485)
++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.. +.++| |...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 7777777776654 34566667777777777777777777766666543 3333333332 12222 3444
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhcc---CCCCc---HHHHHHHHHHHHhcccHHHHHHHHHHHHh-cCCCChHHHHH
Q 048394 217 YIVWMQSYSHLNDIDGVERVFYEMCNEC---EDKCR---WTTYSNLASIYVKAELFEKAELALKKLEE-MKPRDRKAYHF 289 (485)
Q Consensus 217 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~ 289 (485)
|...+..|.+..+.+.|.++..-+.... ...|+ ..-|..+....|+....+.-...++.|.- ...|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 5555666666667666666665554411 11222 12244555555666666666666666554 33356666666
Q ss_pred HHHHHHhcCChhhHHHHHHHhhhcCCC
Q 048394 290 LISLYCNTSNLDAVNRVWGILKSTFPP 316 (485)
Q Consensus 290 l~~~~~~~~~~~~a~~~~~~~~~~~~~ 316 (485)
++++..-.|.++-.-++|..+..-|..
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 666666666776666666666655533
No 34
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.5e-16 Score=145.04 Aligned_cols=287 Identities=13% Similarity=0.082 Sum_probs=159.3
Q ss_pred cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcC--CCccHHHHHHHHHHHHhcCCHhHHHHH
Q 048394 159 MTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRN--ISLDNLTYIVWMQSYSHLNDIDGVERV 236 (485)
Q Consensus 159 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~ 236 (485)
+..+|...|++....-.. +......+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+--+-+ +-++.+
T Consensus 334 ~~~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 445666666664433211 22344455566666666666666666665531 11234455554433211 111222
Q ss_pred H-HHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCC
Q 048394 237 F-YEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFP 315 (485)
Q Consensus 237 ~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 315 (485)
+ +.+.+ ..+..+.+|.++.++|.-+++.+.|++.|++..+.+|....+|+.+..-+.....+|.|...|+......+
T Consensus 409 Laq~Li~--~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLID--TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHh--hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 2 22222 34555566666666666666666666666666666666666666666666666666666666666665555
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHH
Q 048394 316 PTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRES 395 (485)
Q Consensus 316 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~ 395 (485)
.+-.+|..+...|.+.++++.|+-.|+.+.+-++. +.+....+...+.+.|+.++|+++++++...+. -|+..--.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~---kn~l~~~~ 562 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP---KNPLCKYH 562 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC---CCchhHHH
Confidence 55556666666666666666666666666665544 445555555566666666666666666665542 22222223
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCC
Q 048394 396 FMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCL 461 (485)
Q Consensus 396 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 461 (485)
-+..+...+++++|+..++++... .+.+..++..+...|.+.|+.+.|..-|..+.+++|+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~-----vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL-----VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh-----CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 334455566666666666666654 3333444555556666666666666666666666655
No 35
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=1.8e-14 Score=126.74 Aligned_cols=393 Identities=11% Similarity=-0.004 Sum_probs=261.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCC-HhHHHHHHHHHHh
Q 048394 79 LEYCVRSLRKFGRYRHALEVIEWMESRKMHFS-YTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKN-RYTYGALLNCYCK 156 (485)
Q Consensus 79 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~ 156 (485)
+-....-+.++|++++|++.|++..... |+ +.-|.....+|...|+++++.+--....+..|+ +..+..-.+++-.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 3334556789999999999999998875 77 777888889999999999999888888886666 3466666677777
Q ss_pred cCcHHHHHHHHHHHHh-CCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHH-c--CCCccHHHHHHHHHHHHh------
Q 048394 157 ELMTERALALFEKMDE-LKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQ-R--NISLDNLTYIVWMQSYSH------ 226 (485)
Q Consensus 157 ~~~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~--~~~p~~~~~~~l~~~~~~------ 226 (485)
.|++++|+.=..-..- .|+. |..+--.+=+.+-+ .|..-.++-.. . -+.|+.....+....+-.
T Consensus 196 lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~ 269 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLF 269 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccc
Confidence 7887777543222211 1111 11111000001100 01111111111 1 122222222222221110
Q ss_pred -------------------cC---CHhHHHHHHHHHHhccCCC-----Cc------HHHHHHHHHHHHhcccHHHHHHHH
Q 048394 227 -------------------LN---DIDGVERVFYEMCNECEDK-----CR------WTTYSNLASIYVKAELFEKAELAL 273 (485)
Q Consensus 227 -------------------~~---~~~~a~~~~~~~~~~~~~~-----~~------~~~~~~l~~~~~~~~~~~~A~~~~ 273 (485)
.+ .+..|...+.+-....... .| ..+...-...+.-.|+.-.|..-|
T Consensus 270 ~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~ 349 (606)
T KOG0547|consen 270 DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDF 349 (606)
T ss_pred cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhH
Confidence 01 1222333222221101111 11 122222233344578888999999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCH
Q 048394 274 KKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDM 353 (485)
Q Consensus 274 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 353 (485)
+......|.+...|..+..+|....+.++....|....+.++.++.+|..-.....-.+++++|..=|++..+..+. ++
T Consensus 350 ~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~ 428 (606)
T KOG0547|consen 350 DAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NA 428 (606)
T ss_pred HHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hh
Confidence 99998877777778888889999999999999999999999988999988888888899999999999999887655 66
Q ss_pred HhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc-C--CCccHH
Q 048394 354 RLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQF-H--WRPMQV 430 (485)
Q Consensus 354 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~--~~~~~~ 430 (485)
..|-.+..+..+.+++++++..|++.+++- +-.+..|+.....+...+++++|.+.|+..+...+.. . ..+.+.
T Consensus 429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF---P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~pl 505 (606)
T KOG0547|consen 429 YAYIQLCCALYRQHKIAESMKTFEEAKKKF---PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPL 505 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhh
Confidence 777777777778899999999999998873 3445778888899999999999999999998864110 0 011122
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcchhc
Q 048394 431 TVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDMR 484 (485)
Q Consensus 431 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 484 (485)
+...++. +.-.+|+..|..+++++.+.+|....+|..|+....+.|+.++|+.
T Consensus 506 V~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAie 558 (606)
T KOG0547|consen 506 VHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIE 558 (606)
T ss_pred hhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHH
Confidence 2222322 2344899999999999999999999999999999999999999874
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.75 E-value=1e-14 Score=135.40 Aligned_cols=283 Identities=12% Similarity=0.054 Sum_probs=127.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhh-HHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHH--HHHHHHHhcCcHHHHHH
Q 048394 89 FGRYRHALEVIEWMESRKMHFSYTD-FAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYG--ALLNCYCKELMTERALA 165 (485)
Q Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~A~~ 165 (485)
.|+++.|.+.+....+.. +++.. |.....+..+.|+++.|.+++.++.+..|+...+. .....+...|+++.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 355555555555443322 11111 22222233455555555555555555444433222 22344555555555555
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHH-------HHHHHHHHHHhcCCHhHHHHHHH
Q 048394 166 LFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNL-------TYIVWMQSYSHLNDIDGVERVFY 238 (485)
Q Consensus 166 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-------~~~~l~~~~~~~~~~~~a~~~~~ 238 (485)
.++++.+.++. +......+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 55555554433 34455555555555555555555555555544322111 11122222222223333333333
Q ss_pred HHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCCh
Q 048394 239 EMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTN 318 (485)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 318 (485)
.+.+ ..+.++.....+...+...|+.++|..++++..+. +++.
T Consensus 254 ~lp~------------------------------------~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~ 296 (398)
T PRK10747 254 NQSR------------------------------------KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDE 296 (398)
T ss_pred hCCH------------------------------------HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCH
Confidence 3333 22334444444445555555555555555444442 1122
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHH
Q 048394 319 TSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMI 398 (485)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~ 398 (485)
.. .++.+....++.+++.+..+...+..+. |+..+..+...+.+.+++++|.+.|+...+. .|+..++..+..
T Consensus 297 ~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~----~P~~~~~~~La~ 369 (398)
T PRK10747 297 RL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ----RPDAYDYAWLAD 369 (398)
T ss_pred HH--HHHHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCHHHHHHHHH
Confidence 11 1122222334555555555555444333 4444444555555555555555555555544 445555455555
Q ss_pred HHHhcccHHHHHHHHHHHHH
Q 048394 399 YYLRSRQLDLALNEMEAALS 418 (485)
Q Consensus 399 ~~~~~g~~~~A~~~~~~~~~ 418 (485)
.+.+.|+.++|.+++++...
T Consensus 370 ~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 370 ALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555555443
No 37
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=7.1e-14 Score=131.92 Aligned_cols=373 Identities=13% Similarity=0.097 Sum_probs=282.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcc-cCCCHhHHHHHHHHHHhc
Q 048394 79 LEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE-YAKNRYTYGALLNCYCKE 157 (485)
Q Consensus 79 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~ 157 (485)
+......+.-.|++++|.+++.++.+.. +-....|-.|...|-..|+.+++...+-.... .+.|...|-.+.....+.
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL 220 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Confidence 3334444555699999999999998886 46778899999999999999999998877777 566778999999999999
Q ss_pred CcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHH----HHHHHHHHhcCCHhHH
Q 048394 158 LMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTY----IVWMQSYSHLNDIDGV 233 (485)
Q Consensus 158 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~----~~l~~~~~~~~~~~~a 233 (485)
|+++.|.-.|.+.++..+. +...+-.-+..|-+.|+...|...|.++.....+.|..-+ -.+++.+...++-+.|
T Consensus 221 ~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred ccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999998644 5555556677899999999999999999986322222222 3345667778888999
Q ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHh-cCC---------------------------CChH
Q 048394 234 ERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEE-MKP---------------------------RDRK 285 (485)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~---------------------------~~~~ 285 (485)
.+.++......+...+...++.++..|.+...++.|......... ... ++..
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 999998887667777888888899999999999999888777655 111 1111
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhhcC--CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHH
Q 048394 286 AYHFLISLYCNTSNLDAVNRVWGILKSTF--PP-TNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRA 362 (485)
Q Consensus 286 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 362 (485)
+ .-+.-++...+..+....+........ +. +...|.-+..++...|++.+|+.+|..+......-+...|-.+..+
T Consensus 380 v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 380 V-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred h-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 2 122223344444444444555555444 44 7888999999999999999999999999887665578899999999
Q ss_pred HHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHh----hhcCCCccHHHHHHHHHH
Q 048394 363 YLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEA----KQFHWRPMQVTVDTFFRF 438 (485)
Q Consensus 363 ~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~ 438 (485)
|...|.+++|.+.|+..+... +.+...-..|...+-+.|+.++|.+.++.+..-+ ....+.|+..........
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~---p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~ 535 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILA---PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDI 535 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcC---CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHH
Confidence 999999999999999998773 3344455567777889999999999999965332 112366666666666677
Q ss_pred HhhcCChhhHHHHHHHHhh
Q 048394 439 FEEEKDVDGAEEFCKVLKS 457 (485)
Q Consensus 439 ~~~~~~~~~A~~~~~~~~~ 457 (485)
+...|+.++-......++.
T Consensus 536 l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 536 LFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHhhhHHHHHHHHHHHHH
Confidence 8888888775554444433
No 38
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=1.1e-14 Score=126.98 Aligned_cols=345 Identities=11% Similarity=0.061 Sum_probs=244.8
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcc--c------------CCCHhHHHHH
Q 048394 85 SLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE--Y------------AKNRYTYGAL 150 (485)
Q Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~------------~~~~~~~~~l 150 (485)
.+.+.|+++.|+..|+...+.. |+..+-..|+-++..-|+.++..+.|.++.. . .|+....+--
T Consensus 285 tfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ea 362 (840)
T KOG2003|consen 285 TFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEA 362 (840)
T ss_pred eEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHH
Confidence 3467788888888888877764 6766544455555567888998888888765 1 2222222221
Q ss_pred H-----HHHHhcC--cHHHHHHHHHHHHhCCCCCChhh---H------------------HHHHHHHHhCCCcccHHHHH
Q 048394 151 L-----NCYCKEL--MTERALALFEKMDELKFLGNTVA---F------------------NNLSTMYLRLGQPEKVRPLV 202 (485)
Q Consensus 151 i-----~~~~~~~--~~~~A~~~~~~m~~~~~~p~~~~---~------------------~~l~~~~~~~g~~~~a~~~~ 202 (485)
| .-.-+.+ +.++++-.--++..--+.||-.. | -.-...+.+.|+++.|++++
T Consensus 363 i~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 363 IKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred HhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 1 2121111 11222222222222222222110 1 11123567888888888887
Q ss_pred HHHHHcCCCccHHHHHHH------------------------------------HHHHHhcCCHhHHHHHHHHHHhccCC
Q 048394 203 NQMKQRNISLDNLTYIVW------------------------------------MQSYSHLNDIDGVERVFYEMCNECED 246 (485)
Q Consensus 203 ~~~~~~~~~p~~~~~~~l------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~ 246 (485)
.-+.+..-+.-...-+.| .+.....|++++|.+.+++... +.
T Consensus 443 kv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~--nd 520 (840)
T KOG2003|consen 443 KVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN--ND 520 (840)
T ss_pred HHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc--Cc
Confidence 776654221111111111 0111235789999999999987 44
Q ss_pred CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHH
Q 048394 247 KCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQ 326 (485)
Q Consensus 247 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 326 (485)
..-......+.-.+-..|+.++|++.|-++..+...+..+...+...|-...+...|++++.+....-|.++.....|..
T Consensus 521 asc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~d 600 (840)
T KOG2003|consen 521 ASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLAD 600 (840)
T ss_pred hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHH
Confidence 44445544566677889999999999999988666788999999999999999999999999998887779999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHH-hccc
Q 048394 327 ALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYL-RSRQ 405 (485)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~ 405 (485)
.|-+.|+-.+|.+.+-+--+.- .-+..+..-|...|....-+++|..+|++..-. .|+..-|..++..|. +.|+
T Consensus 601 lydqegdksqafq~~ydsyryf-p~nie~iewl~ayyidtqf~ekai~y~ekaali----qp~~~kwqlmiasc~rrsgn 675 (840)
T KOG2003|consen 601 LYDQEGDKSQAFQCHYDSYRYF-PCNIETIEWLAAYYIDTQFSEKAINYFEKAALI----QPNQSKWQLMIASCFRRSGN 675 (840)
T ss_pred Hhhcccchhhhhhhhhhccccc-CcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc----CccHHHHHHHHHHHHHhccc
Confidence 9999999999998877665553 348888888999999999999999999987654 999999999988775 5899
Q ss_pred HHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcC
Q 048394 406 LDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEK 443 (485)
Q Consensus 406 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 443 (485)
+.+|+++|+..... ++.|...+..|++.|...|
T Consensus 676 yqka~d~yk~~hrk-----fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 676 YQKAFDLYKDIHRK-----FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHHHHh-----CccchHHHHHHHHHhcccc
Confidence 99999999999888 8889999999999887776
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=8.9e-16 Score=140.06 Aligned_cols=278 Identities=14% Similarity=0.022 Sum_probs=223.4
Q ss_pred CcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhcccHHHHHHH
Q 048394 194 QPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECE-DKCRWTTYSNLASIYVKAELFEKAELA 272 (485)
Q Consensus 194 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~ 272 (485)
+..+|+..|..+..+ +.-+..+...+..+|...+++++|.++|+.+.+... ...+..+|.+.+-.+ .+.-+--.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL---q~~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL---QDEVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH---HhhHHHHHH
Confidence 457889999995554 333445566778899999999999999999987222 223566666666544 222222234
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCC
Q 048394 273 LKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYD 352 (485)
Q Consensus 273 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 352 (485)
-+.+.+..|..+.+|-++..+|.-+++.+.|++.|++..+..+....+|+.+..-+.....+|.|...|+..+...+. +
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-h 488 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-H 488 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-h
Confidence 445555778889999999999999999999999999999999889999999999999999999999999998876444 4
Q ss_pred HHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHH
Q 048394 353 MRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTV 432 (485)
Q Consensus 353 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 432 (485)
-..|-.+...|.+.++++.|+-.|+++.+.+ +-+.+....+...+.+.|+.++|+++++++... .+.|+..-
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN---P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l-----d~kn~l~~ 560 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN---PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL-----DPKNPLCK 560 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCC---ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc-----CCCCchhH
Confidence 5566668888999999999999999999875 445566667777888999999999999999987 34455555
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcchhc
Q 048394 433 DTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDMR 484 (485)
Q Consensus 433 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 484 (485)
..-+..+...+++++|...++++++.-|.+..++..++..|.+.|+.+.|++
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~ 612 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALL 612 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHH
Confidence 5556677788999999999999999999999999999999999999999875
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.74 E-value=3.2e-17 Score=145.51 Aligned_cols=252 Identities=14% Similarity=0.038 Sum_probs=60.8
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC
Q 048394 221 MQSYSHLNDIDGVERVFYEMCNECE-DKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSN 299 (485)
Q Consensus 221 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (485)
...+.+.|++++|.++++.... .. .+.+...+..+...+...++++.|...++++...++.++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~-~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQ-KIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 3344444444444444433222 11 122223333333344444444444444444444333333344444443 34444
Q ss_pred hhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcc-CCCCHHhHHHHHHHHHhcCcHHHHHHHHHH
Q 048394 300 LDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRC-SSYDMRLADVIIRAYLQKDMYEEAALIFNN 378 (485)
Q Consensus 300 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 378 (485)
+++|..++...-+.. ++...+..++..+...++++++.++++.+.... ...+...|..+...+.+.|+.++|...+++
T Consensus 93 ~~~A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 93 PEEALKLAEKAYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ccccccccccccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444444332221 123333334444444444444444444443221 122344444444444455555555555555
Q ss_pred HHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 048394 379 AKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSL 458 (485)
Q Consensus 379 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 458 (485)
..+.. +.|......++..+...|+.+++.++++..... .+.|+..+..+..++...|+.++|..++++..+.
T Consensus 172 al~~~---P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 172 ALELD---PDDPDARNALAWLLIDMGDYDEAREALKRLLKA-----APDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHcC---CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-----CcCHHHHHHHHHHHhccccccccccccccccccc
Confidence 44442 112333444444444445555444444444443 2233334444444455555555555555555554
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcchh
Q 048394 459 NCLDFSAYSLLIKTYIAAGKLASDM 483 (485)
Q Consensus 459 ~~~~~~~~~~l~~~~~~~g~~~~A~ 483 (485)
.|.|+.....++.++...|+.++|.
T Consensus 244 ~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 244 NPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp STT-HHHHHHHHHHHT---------
T ss_pred ccccccccccccccccccccccccc
Confidence 4555555555555555555554443
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.74 E-value=3.1e-14 Score=132.10 Aligned_cols=284 Identities=11% Similarity=0.055 Sum_probs=216.4
Q ss_pred cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHH--HHHHHHHhcCCHhHHH
Q 048394 157 ELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYI--VWMQSYSHLNDIDGVE 234 (485)
Q Consensus 157 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~ 234 (485)
.|+++.|.+.+....+..-.| ...|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 589999998888766543222 222333344557889999999999998774 45544332 3356788889999999
Q ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChH--------HHHHHHHHHHhcCChhhHHHH
Q 048394 235 RVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRK--------AYHFLISLYCNTSNLDAVNRV 306 (485)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~a~~~ 306 (485)
..++.+.+ ..|-+...+..+...|.+.|++++|.+++..+.+....+.. +|..++.......+.+...++
T Consensus 174 ~~l~~~~~--~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 174 HGVDKLLE--VAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHh--cCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999987 56777888888999999999999999999998884333322 333444444455566777778
Q ss_pred HHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhccccc
Q 048394 307 WGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANAS 386 (485)
Q Consensus 307 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 386 (485)
|+.+....+.++.....+...+...|+.++|.+++.+..+.. |+.... ++.+....++.+++.+..+...+..
T Consensus 252 w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~--- 324 (398)
T PRK10747 252 WKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH--- 324 (398)
T ss_pred HHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHH--HHHhhccCCChHHHHHHHHHHHhhC---
Confidence 888766666688889999999999999999999999998853 344322 3344456699999999999998873
Q ss_pred CCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 048394 387 ARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSL 458 (485)
Q Consensus 387 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 458 (485)
+-|...+..+...|.+.|++++|.+.|+.+.+.. |+..++..+...+.+.|+.++|.+++++....
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~------P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR------PDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3344557788889999999999999999999864 99999999999999999999999999988764
No 42
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=4e-13 Score=117.90 Aligned_cols=391 Identities=13% Similarity=0.089 Sum_probs=235.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCH-hHHHHHHHHHH
Q 048394 77 DMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNR-YTYGALLNCYC 155 (485)
Q Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~li~~~~ 155 (485)
..+......=..++++..|..+|+...... .-+...|...+.+=.++..+..|..++++....-|.+ ..|-..+.+=-
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 333333444455677888999999987766 3567778888888888899999999999888844443 46666666666
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHH
Q 048394 156 KELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVER 235 (485)
Q Consensus 156 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 235 (485)
..|++..|.++|++-.+ ..|+..+|++.+..-.+.+.++.|..+|+...- +.|++.+|--....-.+.|....|.+
T Consensus 153 ~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHH
Confidence 77999999999998877 458899999999988888999999999988876 45888888888888888888888888
Q ss_pred HHHHHHhccCC-CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC---------------------------------
Q 048394 236 VFYEMCNECED-KCRWTTYSNLASIYVKAELFEKAELALKKLEEMKP--------------------------------- 281 (485)
Q Consensus 236 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------------------------------- 281 (485)
+|+...+.-+. ..+...+.+....-.++..++.|..+|+-..+.-|
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 88877762222 12233344444444455566666666655555333
Q ss_pred -----------CChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC-Chh-hHHH-----HHHHH---HhcCChhHHHHH
Q 048394 282 -----------RDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP-TNT-SYLV-----LLQAL---AKLNAIDILKQC 340 (485)
Q Consensus 282 -----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~-~~~~-----l~~~~---~~~~~~~~a~~~ 340 (485)
.|-.+|-..++.-...|+.+...++|+++....|+ ... .|.- +=-++ ....+++.+.++
T Consensus 309 ~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 309 FQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred hHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33444444444444555555555555555555554 211 1111 11111 124555555555
Q ss_pred HHHHHHccCCCCHHhHHHHHHHH----HhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHH
Q 048394 341 FEEWESRCSSYDMRLADVIIRAY----LQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAA 416 (485)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (485)
|+...+. ++....||..+--.| .++.++..|.+++...+.. .|...+|...|..-.+.+++|.+..+|++.
T Consensus 389 yq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~----cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 389 YQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK----CPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc----CCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555553 222333333332222 2445555555555544433 555555555555555555666666666665
Q ss_pred HHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCC--CHHHHHHHHHHHHHhCCCcch
Q 048394 417 LSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCL--DFSAYSLLIKTYIAAGKLASD 482 (485)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 482 (485)
+.- .+-+..+|..+...-...|+.+.|..+|+-+++.... ....|-..+..-...|.++.|
T Consensus 464 le~-----~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~eka 526 (677)
T KOG1915|consen 464 LEF-----SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKA 526 (677)
T ss_pred Hhc-----ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHH
Confidence 554 2224445555555555556666666666555553322 223455555555555554443
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=7.9e-13 Score=115.80 Aligned_cols=362 Identities=15% Similarity=0.090 Sum_probs=264.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHH--HHHHHHHhcCcH
Q 048394 83 VRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYG--ALLNCYCKELMT 160 (485)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~ 160 (485)
.-.+.+.|..+.|++.|......- +..|.+.+....-..+.+.+..+...... |..... -+..++-...+.
T Consensus 171 Gvv~k~~~~~s~A~~sfv~~v~~~----P~~W~AWleL~~lit~~e~~~~l~~~l~~---~~h~M~~~F~~~a~~el~q~ 243 (559)
T KOG1155|consen 171 GVVLKELGLLSLAIDSFVEVVNRY----PWFWSAWLELSELITDIEILSILVVGLPS---DMHWMKKFFLKKAYQELHQH 243 (559)
T ss_pred HHHHHhhchHHHHHHHHHHHHhcC----CcchHHHHHHHHhhchHHHHHHHHhcCcc---cchHHHHHHHHHHHHHHHHH
Confidence 334456677777777777665442 22333333333333344444333333321 211111 233555566788
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCC--CccHHHHHHHHHHHHhcCCHhHHHHHHH
Q 048394 161 ERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNI--SLDNLTYIVWMQSYSHLNDIDGVERVFY 238 (485)
Q Consensus 161 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 238 (485)
+++.+-.+.....|..-+...-+....+.-...++++|+.+|+++.+... --|..+|..++-. +..+-. +.++.
T Consensus 244 ~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~sk--Ls~LA 319 (559)
T KOG1155|consen 244 EEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKSK--LSYLA 319 (559)
T ss_pred HHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhHH--HHHHH
Confidence 89998888888888765544445555566678899999999999998731 1256677776643 332222 22222
Q ss_pred HHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCCh
Q 048394 239 EMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTN 318 (485)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 318 (485)
+-.. .-...-+.|...+.+-|.-.++.++|...|++..+..|....+|+.+..-|....+...|.+-++.+.+..|.|-
T Consensus 320 ~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy 398 (559)
T KOG1155|consen 320 QNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY 398 (559)
T ss_pred HHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH
Confidence 2222 245556677778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHH
Q 048394 319 TSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMI 398 (485)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~ 398 (485)
..|-.+..+|.-.+...-|+-.|++..+..+. |...|.+|..+|.+.++.++|.+.|.+....| .-+...+..|.+
T Consensus 399 RAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~---dte~~~l~~Lak 474 (559)
T KOG1155|consen 399 RAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG---DTEGSALVRLAK 474 (559)
T ss_pred HHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc---ccchHHHHHHHH
Confidence 99999999999999999999999999988665 89999999999999999999999999999887 446678899999
Q ss_pred HHHhcccHHHHHHHHHHHHHHhhhcCCCcc--HHHHHHHHHHHhhcCChhhHHHHHHHHhhcCC
Q 048394 399 YYLRSRQLDLALNEMEAALSEAKQFHWRPM--QVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNC 460 (485)
Q Consensus 399 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 460 (485)
.|-+.++..+|...|++.++.....+...+ .....-|..-+.+.+++++|..........++
T Consensus 475 Lye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET 538 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc
Confidence 999999999999999998874311112222 22233345677889999999988877776543
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.73 E-value=4.7e-14 Score=131.69 Aligned_cols=120 Identities=14% Similarity=0.079 Sum_probs=65.2
Q ss_pred HcCChHHHHHHHHHHHhCCCCCChhh-HHHHHHHHHhhCCHHHHHHHHHhhcccCCCHh--HHHHHHHHHHhcCcHHHHH
Q 048394 88 KFGRYRHALEVIEWMESRKMHFSYTD-FAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRY--TYGALLNCYCKELMTERAL 164 (485)
Q Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~A~ 164 (485)
..|+++.|.+.+....+.. |+... +-....+..+.|+.+.|.+++.+..+..|+.. ........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4566666666665554443 33222 22333445555666666666666555334432 2222355555666666666
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCC
Q 048394 165 ALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNI 210 (485)
Q Consensus 165 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 210 (485)
..++++.+..+. +..++..+...+...|++++|.+++..+.+.++
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~ 218 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL 218 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 666666665433 444555666666666666666666666666543
No 45
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.73 E-value=4.4e-14 Score=133.30 Aligned_cols=341 Identities=13% Similarity=0.072 Sum_probs=142.2
Q ss_pred CCHHHHHHHHHhhcc-cCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHH
Q 048394 125 NGIAAAEKYFNGLSE-YAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVN 203 (485)
Q Consensus 125 g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 203 (485)
|++++|.+++.++.+ .+.+...|-+|...|-+.|+.+++...+-.....+.. |..-|..+.....+.|+++.|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 555555555555544 3334445555555555555555555544444443333 34445555555555555555555555
Q ss_pred HHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHH----HHHHHHHHhcccHHHHHHHHHHHHh-
Q 048394 204 QMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTY----SNLASIYVKAELFEKAELALKKLEE- 278 (485)
Q Consensus 204 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~- 278 (485)
+.++.. +++...+---...|-+.|+...|...|.++.. ...+.|..-+ -..+..+...++.+.|.+.++....
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~-~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQ-LDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHh-hCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 555442 22333333334444555555555555555544 1111121111 1122333334444444444444443
Q ss_pred -cCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHH--HccCCCCHH
Q 048394 279 -MKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP-TNTSYLVLLQALAKLNAIDILKQCFEEWE--SRCSSYDMR 354 (485)
Q Consensus 279 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~ 354 (485)
....+...++.++..+.+...++.|......+...... |..-+..- . .++ ..+.... ..+..++..
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~----~-~~~-----~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD----E-RRR-----EEPNALCEVGKELSYDLR 379 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh----h-hcc-----ccccccccCCCCCCccch
Confidence 22233344445555555555555544444443330000 00000000 0 000 0000000 000111111
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHH
Q 048394 355 LADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDT 434 (485)
Q Consensus 355 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (485)
++ .+.-++.+.+..+....+.....+.+....-+...|.-+..+|...|++++|+.+|..+.... ..-+...|-.
T Consensus 380 v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~----~~~~~~vw~~ 454 (895)
T KOG2076|consen 380 VI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE----GYQNAFVWYK 454 (895)
T ss_pred hH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc----cccchhhhHH
Confidence 10 111122222222233333333333332002233344455555555555555555555555442 1122345555
Q ss_pred HHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcchh
Q 048394 435 FFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDM 483 (485)
Q Consensus 435 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 483 (485)
+..+|...|.+++|.+.|++++...|.+..+-..|...|.+.|++++|+
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~Ekal 503 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKAL 503 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHH
Confidence 5555555555555555555555555555555555555555555555554
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.71 E-value=1.5e-13 Score=128.25 Aligned_cols=288 Identities=11% Similarity=0.019 Sum_probs=143.7
Q ss_pred hhCCHHHHHHHHHhhcccCCCHh-HHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhCCCcccHH
Q 048394 123 KTNGIAAAEKYFNGLSEYAKNRY-TYGALLNCYCKELMTERALALFEKMDELKFLGNTV--AFNNLSTMYLRLGQPEKVR 199 (485)
Q Consensus 123 ~~g~~~~a~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~ 199 (485)
..|+++.|++.+.+..+..|+.. .+-....++.+.|+++.|.+.|++..+.. |+.. ........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHH
Confidence 35666666666666655444432 23333455556666666666666665433 3322 2233355566666666666
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHH-HHHHHH---HhcccHHHHHHHHHH
Q 048394 200 PLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYS-NLASIY---VKAELFEKAELALKK 275 (485)
Q Consensus 200 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~A~~~~~~ 275 (485)
+.++.+.+.. +-+......+...+.+.|++++|.+.+..+.+ .+. .+...+. .-..++ ...+..+++.+.+..
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k-~~~-~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAK-AGL-FDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-cCC-CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 6666666653 22444555666666666666666666666666 222 2222221 111111 222222222233333
Q ss_pred HHhcCC----CChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHH--HHhcCChhHHHHHHHHHHHccC
Q 048394 276 LEEMKP----RDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQA--LAKLNAIDILKQCFEEWESRCS 349 (485)
Q Consensus 276 ~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~ 349 (485)
+....| .++..+..++..+...|+.++|.+++++..+..+.+......++.. ....++.+.+.+.++...+..+
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 333222 3555666666666666666666666666666555532211001111 1223445555555555554433
Q ss_pred CCCH--HhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 048394 350 SYDM--RLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALS 418 (485)
Q Consensus 350 ~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 418 (485)
. |+ ....++...+.+.|++++|.+.|+....... .|+...+..+...+.+.|+.++|.++|++...
T Consensus 331 ~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~--~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 D-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE--QLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred C-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 33 4444555555566666666666553322222 55555555555555556666666555555433
No 47
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=6e-13 Score=119.42 Aligned_cols=404 Identities=13% Similarity=0.021 Sum_probs=286.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhh----cc---cCCC
Q 048394 71 GKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGL----SE---YAKN 143 (485)
Q Consensus 71 g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~---~~~~ 143 (485)
|...++....-+.+.+.-.|+++.|..+...-.-.+ .|.........++.+..++++|..++... .. .+.|
T Consensus 44 ~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~--~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~ 121 (611)
T KOG1173|consen 44 GLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLEK--RDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKD 121 (611)
T ss_pred hccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchh
Confidence 556788888889999999999999999888764433 46777777788889999999999999832 11 1111
Q ss_pred --------HhH----HHHHH-------HHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC-----------
Q 048394 144 --------RYT----YGALL-------NCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLG----------- 193 (485)
Q Consensus 144 --------~~~----~~~li-------~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g----------- 193 (485)
..- -+.-. ..|....+.++|...|.+....++. +...+..++....-..
T Consensus 122 ~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~-c~Ea~~~lvs~~mlt~~Ee~~ll~~l~ 200 (611)
T KOG1173|consen 122 AANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAK-CFEAFEKLVSAHMLTAQEEFELLESLD 200 (611)
T ss_pred hhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchh-hHHHHHHHHHHHhcchhHHHHHHhccc
Confidence 111 01111 2234455778888888887765443 2333333333221110
Q ss_pred ------Cc-ccHHHHHHHHHH----------------cCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcH
Q 048394 194 ------QP-EKVRPLVNQMKQ----------------RNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRW 250 (485)
Q Consensus 194 ------~~-~~a~~~~~~~~~----------------~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 250 (485)
.. +....+|+--.. .+..-+.........-+...+++.+..++.+.+.+ ..|+..
T Consensus 201 ~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle--~dpfh~ 278 (611)
T KOG1173|consen 201 LAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLE--KDPFHL 278 (611)
T ss_pred HHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHh--hCCCCc
Confidence 01 111111211000 11223444445555667778999999999999988 677777
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHh
Q 048394 251 TTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAK 330 (485)
Q Consensus 251 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 330 (485)
..+..-+.++...|+..+-..+-.++.+..|..+.+|-++.--|...|+..+|.+.|.+.....+.-...|..+...|+.
T Consensus 279 ~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~ 358 (611)
T KOG1173|consen 279 PCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAG 358 (611)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhh
Confidence 77777788999999998888888888888888999999999999999999999999999888777777888899999999
Q ss_pred cCChhHHHHHHHHHHHccCCC-CHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHH
Q 048394 331 LNAIDILKQCFEEWESRCSSY-DMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLA 409 (485)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 409 (485)
.|.-|+|...+....+.-+.- -+..| +.--|.+.++++-|.++|.+..... +-|+...+-+.-.....+.+.+|
T Consensus 359 e~EhdQAmaaY~tAarl~~G~hlP~LY--lgmey~~t~n~kLAe~Ff~~A~ai~---P~Dplv~~Elgvvay~~~~y~~A 433 (611)
T KOG1173|consen 359 EGEHDQAMAAYFTAARLMPGCHLPSLY--LGMEYMRTNNLKLAEKFFKQALAIA---PSDPLVLHELGVVAYTYEEYPEA 433 (611)
T ss_pred cchHHHHHHHHHHHHHhccCCcchHHH--HHHHHHHhccHHHHHHHHHHHHhcC---CCcchhhhhhhheeehHhhhHHH
Confidence 999999998888877653221 12233 4445777888999999998887663 44566666666666778888899
Q ss_pred HHHHHHHHHHhhhcC--CCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcchhc
Q 048394 410 LNEMEAALSEAKQFH--WRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDMR 484 (485)
Q Consensus 410 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 484 (485)
..+|+..+..-++.. ..-...+++.|..+|.+.+.+++|+..+++.+.+.|.+..++.+++-+|...|+++.|+.
T Consensus 434 ~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 434 LKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred HHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHH
Confidence 988888774322110 112345678888889999999999999999999989999999999999999999888864
No 48
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=1.4e-11 Score=108.38 Aligned_cols=384 Identities=9% Similarity=0.086 Sum_probs=261.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHh
Q 048394 77 DMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCK 156 (485)
Q Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~ 156 (485)
..+...+..=.+.+....|..+++.....-...| ..|-..+.+=-..|++..|.++|++..+..|+...|++.|..=.+
T Consensus 108 tLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElR 186 (677)
T KOG1915|consen 108 TLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELR 186 (677)
T ss_pred hHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 3344445555667777777777777655431122 223334444445677777777777777767777777777777777
Q ss_pred cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHc-CC-CccHHHHHHHHHHHHhcCCHhHHH
Q 048394 157 ELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQR-NI-SLDNLTYIVWMQSYSHLNDIDGVE 234 (485)
Q Consensus 157 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~ 234 (485)
.+.++.|..++++..-. .|++.+|--....-.+.|+...+..+|+...+. |- .-+...+.+....-.++..++.|.
T Consensus 187 ykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar 264 (677)
T KOG1915|consen 187 YKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERAR 264 (677)
T ss_pred hhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777653 367777766666666677766666666665542 10 001112222222112222233222
Q ss_pred HHH--------------------------------------------HHHHhccCCCCcHHHHHHHHHHHHhcccHHHHH
Q 048394 235 RVF--------------------------------------------YEMCNECEDKCRWTTYSNLASIYVKAELFEKAE 270 (485)
Q Consensus 235 ~~~--------------------------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 270 (485)
-+| +.+.+ ..+.|-.++--.+..-...|+.+...
T Consensus 265 ~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~--~np~nYDsWfdylrL~e~~g~~~~Ir 342 (677)
T KOG1915|consen 265 FIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS--KNPYNYDSWFDYLRLEESVGDKDRIR 342 (677)
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH--hCCCCchHHHHHHHHHHhcCCHHHHH
Confidence 222 22222 45666677777777777889999999
Q ss_pred HHHHHHHhcCCCCh--HHHHHHHHHHH--------hcCChhhHHHHHHHhhhcCCCChhhHHHHHHHH----HhcCChhH
Q 048394 271 LALKKLEEMKPRDR--KAYHFLISLYC--------NTSNLDAVNRVWGILKSTFPPTNTSYLVLLQAL----AKLNAIDI 336 (485)
Q Consensus 271 ~~~~~~~~~~~~~~--~~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~ 336 (485)
++++++....||-. ..|.-.|-... ...+.+.+.+++....+.-|....|+..+--.| .+..++..
T Consensus 343 e~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ 422 (677)
T KOG1915|consen 343 ETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTG 422 (677)
T ss_pred HHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHH
Confidence 99999998666532 22333332221 467889999999999886666666665544444 46789999
Q ss_pred HHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHH
Q 048394 337 LKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAA 416 (485)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (485)
|.+++..... .-|...+|...|..-.+.++++.+..++++.++.+ +-+..+|......-...|+.+.|..+|+-+
T Consensus 423 ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~---Pe~c~~W~kyaElE~~LgdtdRaRaifelA 497 (677)
T KOG1915|consen 423 ARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS---PENCYAWSKYAELETSLGDTDRARAIFELA 497 (677)
T ss_pred HHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---hHhhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999998775 46678889999999999999999999999999986 556678888777778899999999999999
Q ss_pred HHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 048394 417 LSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYI 474 (485)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 474 (485)
+++. ........|.+.|.--...|.++.|..+++++++..+.-. +|.+++..-.
T Consensus 498 i~qp---~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~ 551 (677)
T KOG1915|consen 498 ISQP---ALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEA 551 (677)
T ss_pred hcCc---ccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhc
Confidence 9872 1223345677778777889999999999999999766444 8888776655
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=4.5e-13 Score=112.00 Aligned_cols=286 Identities=13% Similarity=0.101 Sum_probs=160.3
Q ss_pred hCCHHHHHHHHHhhcc-cCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChh------hHHHHHHHHHhCCCcc
Q 048394 124 TNGIAAAEKYFNGLSE-YAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTV------AFNNLSTMYLRLGQPE 196 (485)
Q Consensus 124 ~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~------~~~~l~~~~~~~g~~~ 196 (485)
.++.++|...|-+|.+ .+-+..+--+|.+.|-+.|.++.|+.+.+.+.+. ||.. +...|..-|...|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 3566666666666666 3233345556666666667777777666666554 3321 2233445566666666
Q ss_pred cHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcH---HHHHHHHHHHHhcccHHHHHHHH
Q 048394 197 KVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRW---TTYSNLASIYVKAELFEKAELAL 273 (485)
Q Consensus 197 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~ 273 (485)
.|+++|..+.+.|. --......|+..|....+|++|+.+-+++.+..+.+... ..|..+...+....+++.|...+
T Consensus 125 RAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 66666666665431 223344556666666666666666666665522222222 22444444555556666666666
Q ss_pred HHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCC
Q 048394 274 KKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP-TNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYD 352 (485)
Q Consensus 274 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 352 (485)
.+..+.+|..+.+-..+.+.....|++..|.+.|+.+.+.++. -..+...|..+|...|+.++....+..+.+....++
T Consensus 204 ~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 204 KKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 6666666656666666666666666666666666666666666 556666666666666666666666666655433222
Q ss_pred HHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHH---hcccHHHHHHHHHHHHHH
Q 048394 353 MRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYL---RSRQLDLALNEMEAALSE 419 (485)
Q Consensus 353 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~ 419 (485)
.-..+.+.-......+.|..++.+-+.+ .|+...+..+|..-. ..|...+.+..++.|+..
T Consensus 284 --~~l~l~~lie~~~G~~~Aq~~l~~Ql~r----~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 284 --AELMLADLIELQEGIDAAQAYLTRQLRR----KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred --HHHHHHHHHHHhhChHHHHHHHHHHHhh----CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 2233333333444455555555544444 566666666665543 233455555555555544
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=4.4e-13 Score=112.02 Aligned_cols=288 Identities=13% Similarity=0.126 Sum_probs=188.9
Q ss_pred cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcC-CCcc--HHHHHHHHHHHHhcCCHhHH
Q 048394 157 ELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRN-ISLD--NLTYIVWMQSYSHLNDIDGV 233 (485)
Q Consensus 157 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~~~~~~a 233 (485)
.++.++|.++|-+|.+.+.. +..+--+|.+.|-+.|..|+|+++-+.+.++- ..-+ ......|.+-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 46777888888887775433 44455667777777788888888777776641 1111 12233455667777888888
Q ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHhcCChhhHHHHHH
Q 048394 234 ERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRD-----RKAYHFLISLYCNTSNLDAVNRVWG 308 (485)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~ 308 (485)
+.+|..+.+ ...--.....-|+..|-...+|++|+++-+++.+..+.+ ...|.-+...+....+.+.|...+.
T Consensus 127 E~~f~~L~d--e~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 127 EDIFNQLVD--EGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHhc--chhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 888877776 233334455557777877788888888777777733322 3446667777777777778888888
Q ss_pred HhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCC
Q 048394 309 ILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASAR 388 (485)
Q Consensus 309 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p 388 (485)
+..+.++....+-..+.+.....|+++.|.+.++.+.+.++..-..+...|..+|.+.|+.++....+.++.+. .+
T Consensus 205 kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~----~~ 280 (389)
T COG2956 205 KALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET----NT 280 (389)
T ss_pred HHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc----cC
Confidence 77777777666666777777777888888888887777766555667777777788888888887777777765 23
Q ss_pred chhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH---hhcCChhhHHHHHHHHhh
Q 048394 389 FFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFF---EEEKDVDGAEEFCKVLKS 457 (485)
Q Consensus 389 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~A~~~~~~~~~ 457 (485)
....-..+...-....-.+.|...+.+-+... |+...+..++... ...|...+....++.|..
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~------Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRRK------PTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhhC------CcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 33333333333333444555555555555554 7777777777543 456666666666666654
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.6e-12 Score=116.77 Aligned_cols=286 Identities=10% Similarity=0.041 Sum_probs=241.2
Q ss_pred hHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Q 048394 181 AFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIY 260 (485)
Q Consensus 181 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (485)
....-..-+...+++.+..++.+...+. .++....+..-|.++...|+..+-..+=..+.+ ..|....+|-+++--|
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~--~yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVD--LYPSKALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCCcchhhHHHHH
Confidence 3344455667789999999999999887 356667777778889999998888888888887 6777788888899999
Q ss_pred HhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHH
Q 048394 261 VKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQC 340 (485)
Q Consensus 261 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 340 (485)
...|+..+|.+.|.+...+++.-...|..+...|...|..|.|...+..+-+..+.....+.-+.--|.+.++.+.|.++
T Consensus 323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHH
Confidence 99999999999999999999988999999999999999999999999998887777555555577788899999999999
Q ss_pred HHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhc--cc-ccC-CchhHHHHHHHHHHhcccHHHHHHHHHHH
Q 048394 341 FEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKR--AN-ASA-RFFKSRESFMIYYLRSRQLDLALNEMEAA 416 (485)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (485)
|.+.....+. |+...+-+.-+....+.+.+|..+|+..+.. .+ ... --..+++.|..+|.+.+.+++|+..+++.
T Consensus 403 f~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 403 FKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 9999887655 8888898888888889999999999987732 11 001 12345788899999999999999999999
Q ss_pred HHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 048394 417 LSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIA 475 (485)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 475 (485)
+.. .+.+..++.++.-.+...|+++.|...|.+.+-+.|.|..+-..|..+...
T Consensus 482 L~l-----~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 482 LLL-----SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHc-----CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 998 678899999999999999999999999999999999998877777665544
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.62 E-value=7.6e-12 Score=107.98 Aligned_cols=285 Identities=10% Similarity=0.008 Sum_probs=193.9
Q ss_pred HcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhccc--CCCHhHHHHHHHHHHhcCcHHHHHH
Q 048394 88 KFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEY--AKNRYTYGALLNCYCKELMTERALA 165 (485)
Q Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~ 165 (485)
-.|+|.+|.++..+-.+.+- -....|..-..+.-+.|+.+.+-.++.+..+. .++...+-+........|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 36889999998888777763 23445555666777788999999999888884 4555667777788888899999988
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccH-------HHHHHHHHHHHhcCCHhHHHHHHH
Q 048394 166 LFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDN-------LTYIVWMQSYSHLNDIDGVERVFY 238 (485)
Q Consensus 166 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~ 238 (485)
-++++.+.+.. ++........+|.+.|++..+..++.++.+.|.-.+. .+|..+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 88888887755 5667888888999999999999999999888765443 345666666656666666666666
Q ss_pred HHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCCh
Q 048394 239 EMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTN 318 (485)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 318 (485)
.... ...-++..-.+++.-+.++|+.++|.++.++..+..- |.. ....-.+.+.++.+.-.+..++-.+..+.++
T Consensus 254 ~~pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~-D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 254 NQPR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW-DPR--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred hccH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc-Chh--HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 6665 3334444444577777777888888777777665222 111 1222234455666666666666655555566
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 048394 319 TSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKK 381 (485)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 381 (485)
..+.+|...|.+.+.+.+|.+.|+...+. .|+..+|+.+.++|.+.|+.++|.++.++...
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 66666666666667777776666655443 45666666666666666766666666666553
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.61 E-value=1.3e-11 Score=106.59 Aligned_cols=287 Identities=11% Similarity=0.033 Sum_probs=224.4
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHH
Q 048394 156 KELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVER 235 (485)
Q Consensus 156 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 235 (485)
-.|++.+|++...+-.+.+..| ...|..-+.+.-..|+.+.+-.++.+..+.--.++....-+........|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3689999999999888877553 345666667778889999999999988876335566667777788888999999999
Q ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-C-------ChHHHHHHHHHHHhcCChhhHHHHH
Q 048394 236 VFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKP-R-------DRKAYHFLISLYCNTSNLDAVNRVW 307 (485)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~-------~~~~~~~l~~~~~~~~~~~~a~~~~ 307 (485)
-++++.+ ..+-.+.+......+|.+.|++.....++.++.+..- . ...+|..+++-....+..+.-...|
T Consensus 175 ~v~~ll~--~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 175 NVDQLLE--MTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHH--hCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 9998887 5666778888889999999999999999999888222 1 2456777777777777777777778
Q ss_pred HHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccC
Q 048394 308 GILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASA 387 (485)
Q Consensus 308 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 387 (485)
+.....-..++..-.+++.-+...|+.++|.++..+..+.+..|... ..-.+.+-++.+.-.+..++-.+.. +
T Consensus 253 ~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h---~ 325 (400)
T COG3071 253 KNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQH---P 325 (400)
T ss_pred HhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhC---C
Confidence 77766555577778888888999999999999999999887766521 2223556677777777777666553 3
Q ss_pred CchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 048394 388 RFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSL 458 (485)
Q Consensus 388 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 458 (485)
.++..+..|...|.+.+.|.+|.+.|+..++. .|+..+|..+..++.+.|+..+|.++.++..-.
T Consensus 326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~------~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 326 EDPLLLSTLGRLALKNKLWGKASEALEAALKL------RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 33467778888999999999999999988875 499999999999999999999999998887643
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.57 E-value=1.6e-12 Score=126.17 Aligned_cols=149 Identities=11% Similarity=-0.037 Sum_probs=74.7
Q ss_pred HhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHH
Q 048394 230 IDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGI 309 (485)
Q Consensus 230 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 309 (485)
+++|...+++..+ ..+.+...+..+...+...|++++|...|+++.+..|.+...+..+..++...|++++|...+++
T Consensus 320 ~~~A~~~~~~Al~--ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATE--LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4555555555554 34444555555555555555555555555555555555555555555555555555555555555
Q ss_pred hhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 048394 310 LKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAK 380 (485)
Q Consensus 310 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 380 (485)
..+..|.+...+..++..+...|++++|...++++.+....-++..+..+..++...|++++|...+.++.
T Consensus 398 Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 398 CLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 55555443333323333344445555555555554443211123334444455555555555555555543
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.57 E-value=4.1e-12 Score=110.10 Aligned_cols=201 Identities=17% Similarity=0.072 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 048394 250 WTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALA 329 (485)
Q Consensus 250 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 329 (485)
...+..+...+...|++++|...++++.+..|.+...+..+...+...|++++|...+++.....+.+...+..+...+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 34455556666666666666666666655555555666666666666666666666666666555555555566666666
Q ss_pred hcCChhHHHHHHHHHHHccCC-CCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHH
Q 048394 330 KLNAIDILKQCFEEWESRCSS-YDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDL 408 (485)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 408 (485)
..|++++|.+.++...+.... .....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID---PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCChHHHHHHHHHHHHcCCHHH
Confidence 666666666666666543211 123445556666677777777777777766553 2234456666666677777777
Q ss_pred HHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 048394 409 ALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSL 458 (485)
Q Consensus 409 A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 458 (485)
|...+++.... .+.+...+..+...+...|+.+.|..+.+.+...
T Consensus 188 A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQT-----YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 77777776665 2334555555566666677777777766665543
No 56
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=6e-13 Score=111.37 Aligned_cols=230 Identities=16% Similarity=0.086 Sum_probs=133.3
Q ss_pred HHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh
Q 048394 183 NNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVK 262 (485)
Q Consensus 183 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (485)
+.+..+|.+.|.+.+|.+.++..+.. .|-+.||..|-+.|.+..++..|+.++.+-.+ ..|.++....-+...+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHHH
Confidence 44556666666666666666665554 34455555566666666666666666666655 455555555555555556
Q ss_pred cccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 048394 263 AELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFE 342 (485)
Q Consensus 263 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 342 (485)
.++.++|.++++...+..+.+..+...+...|.-.++++-|+..++++.+.|..++..|+.+.-+|...+++|-++.-|+
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 66666666666666665555666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHccCCCC--HHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 048394 343 EWESRCSSYD--MRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSE 419 (485)
Q Consensus 343 ~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 419 (485)
.....--.|+ ..+|-.+.......|++.-|.+.|+-....+ ..+...++.|.-.-.+.|++++|..+++...+.
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d---~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD---AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC---cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 5554332222 3345445555555566666666665555443 334455555555555566666666666555543
No 57
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.56 E-value=1.1e-09 Score=102.43 Aligned_cols=366 Identities=13% Similarity=0.019 Sum_probs=213.9
Q ss_pred CCChhhHHHHHHHHHhhCCHHHHHHHHHhhcc-cCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhh-HHHH
Q 048394 108 HFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE-YAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVA-FNNL 185 (485)
Q Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-~~~l 185 (485)
.-+...|..+.-++..+|+++.+-+.|++... .......|+.+...|...|.-..|..++++-......|+..+ +-..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 34556666666666666777777777766555 333455666666666666776667766666544332233222 2222
Q ss_pred HHHHH-hCCCcccHHHHHHHHHHc--CC--CccHHHHHHHHHHHHhc-----------CCHhHHHHHHHHHHhccCCCCc
Q 048394 186 STMYL-RLGQPEKVRPLVNQMKQR--NI--SLDNLTYIVWMQSYSHL-----------NDIDGVERVFYEMCNECEDKCR 249 (485)
Q Consensus 186 ~~~~~-~~g~~~~a~~~~~~~~~~--~~--~p~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~ 249 (485)
...|. +.+..++++.+..+.... +. ......|..+.-+|... ....++++.+++..+.....|+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 22222 345555555555555441 10 01122232232232221 1134566666666652333333
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHH
Q 048394 250 WTTYSNLASIYVKAELFEKAELALKKLEEM-KPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQAL 328 (485)
Q Consensus 250 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 328 (485)
...| +.--|+..++.+.|.+...+..+. ...+...|..+.-.+...+++.+|+.+.+......+.|......-+..-
T Consensus 480 ~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 480 VIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred HHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 3333 444555666777777777776664 4456666777766666777777777666655444333111111111111
Q ss_pred HhcCChhHH-------------------------------------------HHHHHHHH--------Hcc---------
Q 048394 329 AKLNAIDIL-------------------------------------------KQCFEEWE--------SRC--------- 348 (485)
Q Consensus 329 ~~~~~~~~a-------------------------------------------~~~~~~~~--------~~~--------- 348 (485)
...++.+++ .+....+. ..+
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~ 637 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST 637 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence 111111111 11111110 000
Q ss_pred --CCCC------HHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Q 048394 349 --SSYD------MRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEA 420 (485)
Q Consensus 349 --~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 420 (485)
..|+ ...|......+.+.+..++|...+.+..... +-....|......+...|++.+|.+.|.......
T Consensus 638 ~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~---~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 638 VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID---PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc---hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 0111 2244556667778888888888888777653 3334455555566778999999999999999873
Q ss_pred hhcCCCccHHHHHHHHHHHhhcCChhhHHH--HHHHHhhcCCCCHHHHHHHHHHHHHhCCCcchh
Q 048394 421 KQFHWRPMQVTVDTFFRFFEEEKDVDGAEE--FCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDM 483 (485)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 483 (485)
+.++....++...+.+.|+..-|.. ++..+.+.+|.++.+|..|+..+.+.|+.++|.
T Consensus 715 -----P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aa 774 (799)
T KOG4162|consen 715 -----PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAA 774 (799)
T ss_pred -----CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHH
Confidence 4456688889999999999888888 999999999999999999999999999998874
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=99.55 E-value=5.1e-12 Score=122.63 Aligned_cols=215 Identities=10% Similarity=0.024 Sum_probs=116.5
Q ss_pred CHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh---------cccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC
Q 048394 229 DIDGVERVFYEMCNECEDKCRWTTYSNLASIYVK---------AELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSN 299 (485)
Q Consensus 229 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (485)
.+++|...|++..+ ..|.+...|..+..+|.. .+++++|...++++.+..|.+..++..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~--ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVN--MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 34566666666655 344444444444444332 2335666666666666666666666666666666666
Q ss_pred hhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHH
Q 048394 300 LDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNA 379 (485)
Q Consensus 300 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 379 (485)
+++|...++++.+..|.+...+..+...+...|++++|...+++..+..+. +...+..++..+...|++++|...++++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666665443 2222222333344456666666666665
Q ss_pred HhcccccCC-chhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccH-HHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 048394 380 KKRANASAR-FFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQ-VTVDTFFRFFEEEKDVDGAEEFCKVLKS 457 (485)
Q Consensus 380 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 457 (485)
.+.. .| +...+..+...+...|+.++|...+.++... .|+. ...+.+...+...| +.|...++.+.+
T Consensus 433 l~~~---~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 433 RSQH---LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ------EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHhc---cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc------cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 5442 22 2233444555556666666666666665443 1332 22333334444444 355555555444
No 59
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.55 E-value=1.7e-10 Score=108.36 Aligned_cols=283 Identities=14% Similarity=0.091 Sum_probs=136.8
Q ss_pred CCcHHHHHHHHHHh-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-h-----hCCHH
Q 048394 57 GGSVTGALNAYIME-GKTVR-KDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTA-K-----TNGIA 128 (485)
Q Consensus 57 ~~~~~~~~~~~~~~-g~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-----~g~~~ 128 (485)
.+....+++.+.+. +..+| ...+......+.+.|+.++|..+|..+.+.+ |+...|-..+..+. - ..+.+
T Consensus 17 ~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~~~~~ 94 (517)
T PF12569_consen 17 AGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSDEDVE 94 (517)
T ss_pred CCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccccccHH
Confidence 34555555555432 22233 3334444555556666666666666666655 44444333333222 1 11345
Q ss_pred HHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHH-HHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHH
Q 048394 129 AAEKYFNGLSEYAKNRYTYGALLNCYCKELMTE-RALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQ 207 (485)
Q Consensus 129 ~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~-~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 207 (485)
...++++++....|.......+.-.+.....+. .+...+..+...|+++ +|+.+-..|......+-..+++.....
T Consensus 95 ~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~ 171 (517)
T PF12569_consen 95 KLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVN 171 (517)
T ss_pred HHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 555555555553344333333332233222232 3344455555555432 455555555444443334444444332
Q ss_pred c----C----------CCccHH--HHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHH
Q 048394 208 R----N----------ISLDNL--TYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAEL 271 (485)
Q Consensus 208 ~----~----------~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 271 (485)
. + -.|+.. ++..+...|...|++++|+++++..+. ..|..+..|..-+..+-+.|++.+|.+
T Consensus 172 ~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~~Aa~ 249 (517)
T PF12569_consen 172 SLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLKEAAE 249 (517)
T ss_pred hhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 1 0 112221 223344555556666666666666555 334445555555666666666666666
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC---Chh----h--HHHHHHHHHhcCChhHHHHHHH
Q 048394 272 ALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP---TNT----S--YLVLLQALAKLNAIDILKQCFE 342 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~----~--~~~l~~~~~~~~~~~~a~~~~~ 342 (485)
.++.....+..|...-+..+..+.+.|+.++|..++......+.. +.. . ......+|.+.|++..|++.|.
T Consensus 250 ~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~ 329 (517)
T PF12569_consen 250 AMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFH 329 (517)
T ss_pred HHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 666666655555555555566666666666666665555443321 111 1 1334455555666666666555
Q ss_pred HHHH
Q 048394 343 EWES 346 (485)
Q Consensus 343 ~~~~ 346 (485)
.+.+
T Consensus 330 ~v~k 333 (517)
T PF12569_consen 330 AVLK 333 (517)
T ss_pred HHHH
Confidence 5544
No 60
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2.3e-10 Score=101.40 Aligned_cols=385 Identities=13% Similarity=0.064 Sum_probs=258.3
Q ss_pred CCCcHHHHHHHHHHh-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhhCCHHHHHH
Q 048394 56 TGGSVTGALNAYIME-GKTVR-KDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFS-YTDFAVYLDLTAKTNGIAAAEK 132 (485)
Q Consensus 56 ~~~~~~~~~~~~~~~-g~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~ 132 (485)
+.+...++++.+... ...|+ +..|.....+|...|+|+.+.+--....+.+ |+ ...+..-..++-..|++++|+.
T Consensus 127 ~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~lg~~~eal~ 204 (606)
T KOG0547|consen 127 RNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQLGKFDEALF 204 (606)
T ss_pred hcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHhhccHHHHHH
Confidence 678888999888754 56677 7888889999999999999999888877765 44 3345555667777888887764
Q ss_pred HHHhhc--ccCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHh-CC--CCCChhhHHHHHHHHHh----------------
Q 048394 133 YFNGLS--EYAKNRYTYGALLNCYCKELMTERALALFEKMDE-LK--FLGNTVAFNNLSTMYLR---------------- 191 (485)
Q Consensus 133 ~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-~~--~~p~~~~~~~l~~~~~~---------------- 191 (485)
=..-.. ..-.|..+ ..++.-..+ ..|....++-.. .+ +.|+.....+....+..
T Consensus 205 D~tv~ci~~~F~n~s~-~~~~eR~Lk----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~ 279 (606)
T KOG0547|consen 205 DVTVLCILEGFQNASI-EPMAERVLK----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAA 279 (606)
T ss_pred hhhHHHHhhhcccchh-HHHHHHHHH----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhh
Confidence 221110 00001100 111111111 111111111111 11 12222222222211110
Q ss_pred ---------CC---CcccHHHHHHHHHH-cCCCccH-----------HHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCC
Q 048394 192 ---------LG---QPEKVRPLVNQMKQ-RNISLDN-----------LTYIVWMQSYSHLNDIDGVERVFYEMCNECEDK 247 (485)
Q Consensus 192 ---------~g---~~~~a~~~~~~~~~-~~~~p~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 247 (485)
.+ .+..|.+.+.+-.. .-..++. .+.......+.-.|+.-.|..-|+..+. ..+
T Consensus 280 l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~--l~~ 357 (606)
T KOG0547|consen 280 LAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK--LDP 357 (606)
T ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh--cCc
Confidence 01 12222222211110 0011111 1111112223456888899999999988 444
Q ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHH
Q 048394 248 CRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQA 327 (485)
Q Consensus 248 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 327 (485)
.+...|-.+..+|....+.++....|....+.+|.++.+|..-.+.+.-.+++++|..=|++.....|.+...|..+.-+
T Consensus 358 ~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a 437 (606)
T KOG0547|consen 358 AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCA 437 (606)
T ss_pred ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHH
Confidence 44455778899999999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred HHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCc-------hhHH--HHHHH
Q 048394 328 LAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARF-------FKSR--ESFMI 398 (485)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~-------~~~~--~~l~~ 398 (485)
..+.+++++++..|++..+.-+. -+..|+.....+..++++++|.+.|+..++. .|. ...+ -.++.
T Consensus 438 ~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L----E~~~~~~~v~~~plV~Ka~l~ 512 (606)
T KOG0547|consen 438 LYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAIEL----EPREHLIIVNAAPLVHKALLV 512 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHHHhh----ccccccccccchhhhhhhHhh
Confidence 99999999999999999988555 7889999999999999999999999998875 232 1111 11111
Q ss_pred HHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCC
Q 048394 399 YYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNC 460 (485)
Q Consensus 399 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 460 (485)
. -=.+++..|..++++.++.. +.....+..|...-.+.|+.++|+++|++...+..
T Consensus 513 ~-qwk~d~~~a~~Ll~KA~e~D-----pkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 513 L-QWKEDINQAENLLRKAIELD-----PKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred h-chhhhHHHHHHHHHHHHccC-----chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1 12489999999999999873 34556788899999999999999999999877543
No 61
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.55 E-value=2.9e-10 Score=104.15 Aligned_cols=429 Identities=12% Similarity=0.064 Sum_probs=270.4
Q ss_pred CchhHHHHHHhhcC--CCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 048394 42 NEDKLYKRLSALGA--TGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLD 119 (485)
Q Consensus 42 ~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 119 (485)
....+|+++.+... .-..-..+++...+ +.+-...++....-.+...|+-++|.+......+..+ -+.+.|..+.-
T Consensus 6 KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl 83 (700)
T KOG1156|consen 6 KENALFRRALKCYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGL 83 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHH
Confidence 45567777766543 11222223333333 5555566666655566777888888888777766553 45667777666
Q ss_pred HHHhhCCHHHHHHHHHhhcc-cCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccH
Q 048394 120 LTAKTNGIAAAEKYFNGLSE-YAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKV 198 (485)
Q Consensus 120 ~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 198 (485)
.+....++++|++.|..... .+-|...|..+...-++.|+++.....-.+..+..+. ....|..+..++.-.|+...|
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHH
Confidence 66777888888888888877 4445667777777777888888888877777775433 455677777778888888888
Q ss_pred HHHHHHHHHcC-CCccHHHHHHHHH------HHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHH
Q 048394 199 RPLVNQMKQRN-ISLDNLTYIVWMQ------SYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAEL 271 (485)
Q Consensus 199 ~~~~~~~~~~~-~~p~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 271 (485)
..++++..+.. -.|+...+.-... .....|..+.|.+.+..-.. .+......-..-...+.+.+++++|..
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~--~i~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK--QIVDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh--HHHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 88888887654 2456555543322 33456777777777766554 333333333456677888888888888
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCChhhHH-HHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCC
Q 048394 272 ALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVN-RVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSS 350 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 350 (485)
++..+....|.+...|-.+..++.+-.+.-++. .+|....+..+........=++......-.+...+++....+.|+.
T Consensus 241 ~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 241 VYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 888888877767777777777775333333333 6666665554442211111112211122233444555566666654
Q ss_pred CCHHhHHHHHHHHHhcCcHHHHHHHHHHHH----hccc--------ccCCchhHH--HHHHHHHHhcccHHHHHHHHHHH
Q 048394 351 YDMRLADVIIRAYLQKDMYEEAALIFNNAK----KRAN--------ASARFFKSR--ESFMIYYLRSRQLDLALNEMEAA 416 (485)
Q Consensus 351 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~--------~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~ 416 (485)
+ ++..+...|-.-...+-..++.-.+. ..|. ..+|....| -.++..|-+.|+++.|..+++.+
T Consensus 321 ~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 321 S---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred c---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3 34444444433222221111111111 1111 013444444 34567788999999999999999
Q ss_pred HHHhhhcCCCcc-HHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcchhc
Q 048394 417 LSEAKQFHWRPM-QVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDMR 484 (485)
Q Consensus 417 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 484 (485)
++.. |+ ...|..-.+.+...|++++|..+++++.+.+.+|...-.--++-..++++.++|.+
T Consensus 398 IdHT------PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~ 460 (700)
T KOG1156|consen 398 IDHT------PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEE 460 (700)
T ss_pred hccC------chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHH
Confidence 9863 55 44565666888899999999999999999998888777777888888888888753
No 62
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=2e-09 Score=93.57 Aligned_cols=318 Identities=10% Similarity=-0.007 Sum_probs=230.9
Q ss_pred CCCHhHHHHHHHHHHh--cCcHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHH-
Q 048394 141 AKNRYTYGALLNCYCK--ELMTERALALFEKMDELK-FLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLT- 216 (485)
Q Consensus 141 ~~~~~~~~~li~~~~~--~~~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~- 216 (485)
+|+.......+.+++. .++...|...+-.+.... +.-|+.....+...+...|+.++|+..|++..-. .|+..+
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~ 268 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEA 268 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhhh
Confidence 3444444444544443 344444544443333222 3446667788889999999999999999988764 343322
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 048394 217 YIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCN 296 (485)
Q Consensus 217 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (485)
.....-.+.+.|+++....+...+.. ........|..-+......++++.|+.+-++..+..+.+...+..-...+..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~--~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFA--KVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHh--hhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHh
Confidence 12223344677888888888877766 2323333443345556678899999999999988888888999888899999
Q ss_pred cCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHH-HHHHh-cCcHHHHHH
Q 048394 297 TSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVII-RAYLQ-KDMYEEAAL 374 (485)
Q Consensus 297 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~A~~ 374 (485)
.|++++|.-.|+......|.+...|..|+.+|...|++.+|.-.-+...+.- ..+..+.+.+. .++.- -..-++|..
T Consensus 347 ~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHH
Confidence 9999999999999988888899999999999999999999887777665542 22566665442 33332 233578888
Q ss_pred HHHHHHhcccccCCch-hHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHH
Q 048394 375 IFNNAKKRANASARFF-KSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCK 453 (485)
Q Consensus 375 ~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 453 (485)
++++.... .|+. ...+.+...+...|..++++.++++.+... ||....+.|...+...+.+++|...|.
T Consensus 426 f~ek~L~~----~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~------~D~~LH~~Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 426 FAEKSLKI----NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF------PDVNLHNHLGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred HHHhhhcc----CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc------cccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 88887766 5543 345566777889999999999999998854 899999999999999999999999999
Q ss_pred HHhhcCCCCHHHHHHHHHHH
Q 048394 454 VLKSLNCLDFSAYSLLIKTY 473 (485)
Q Consensus 454 ~~~~~~~~~~~~~~~l~~~~ 473 (485)
.++..+|.+..+...|-..-
T Consensus 496 ~ALr~dP~~~~sl~Gl~~lE 515 (564)
T KOG1174|consen 496 KALRQDPKSKRTLRGLRLLE 515 (564)
T ss_pred HHHhcCccchHHHHHHHHHH
Confidence 99999999988887775443
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=1.2e-12 Score=109.63 Aligned_cols=233 Identities=12% Similarity=0.012 Sum_probs=162.9
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Q 048394 218 IVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNT 297 (485)
Q Consensus 218 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 297 (485)
+.+.++|.+.|.+.+|.+.++...+ ..|-+.||..|...|.+..+++.|+.++.+-.+..|.++....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~---q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT---QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh---cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 4566777777777777777777666 4455566666777777777777777777777776666666666677777777
Q ss_pred CChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHH
Q 048394 298 SNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFN 377 (485)
Q Consensus 298 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 377 (485)
++.++|.++++...+..+.+..+..++...|.-.++.+.|+.+|+.+.+.|.. ++..|+.+.-+|.-.++++-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 77777777777777776667777777777777777777777777777777776 67777777777777777777777777
Q ss_pred HHHhcccccCCc--hhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 048394 378 NAKKRANASARF--FKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVL 455 (485)
Q Consensus 378 ~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 455 (485)
+....-. .|+ ...|-.+.......|++.-|.+.|+-.+.. .......++.|.-.-.+.|++++|..+++.+
T Consensus 383 RAlstat--~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~-----d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 383 RALSTAT--QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS-----DAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHhhcc--CcchhhhhhhccceeEEeccchHHHHHHHHHHhcc-----CcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 7665432 333 234555555556677777777777777765 3344566777776667777777777777777
Q ss_pred hhcCCC
Q 048394 456 KSLNCL 461 (485)
Q Consensus 456 ~~~~~~ 461 (485)
....|.
T Consensus 456 ~s~~P~ 461 (478)
T KOG1129|consen 456 KSVMPD 461 (478)
T ss_pred hhhCcc
Confidence 666554
No 64
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.54 E-value=1.3e-11 Score=106.95 Aligned_cols=201 Identities=10% Similarity=0.024 Sum_probs=151.8
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 048394 213 DNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLIS 292 (485)
Q Consensus 213 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 292 (485)
....+..+...+...|++++|...+++..+ ..+.+...+..+...+...|++++|.+.+++..+..|.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALE--HDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 345566677777788888888888888776 445566777778888888888888888888887776767777888888
Q ss_pred HHHhcCChhhHHHHHHHhhhcCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHH
Q 048394 293 LYCNTSNLDAVNRVWGILKSTFPP--TNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYE 370 (485)
Q Consensus 293 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 370 (485)
.+...|++++|...+++....... ....+..+...+...|++++|.+.+.+..+..+. +...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 888888888888888887764322 4556677778888888888888888888776543 5667777888888888888
Q ss_pred HHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 048394 371 EAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSE 419 (485)
Q Consensus 371 ~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 419 (485)
+|...+++..+.. ..+...+..+...+...|+.++|..+.+.+...
T Consensus 187 ~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 187 DARAYLERYQQTY---NQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 8888888887762 445566666777777888888888887776553
No 65
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=8.9e-10 Score=93.77 Aligned_cols=359 Identities=11% Similarity=0.078 Sum_probs=229.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccC-------------CCH--
Q 048394 80 EYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYA-------------KNR-- 144 (485)
Q Consensus 80 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------------~~~-- 144 (485)
.-+...+.+.|++++|+.++..+.... .++...+..+..++.-.|.+.+|..+-....+.+ .|.
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHH
Confidence 345566778999999999999987765 4666666666666666788888888776654400 011
Q ss_pred ------------hHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHH-HHHHhCCCcccHHHHHHHHHHcCCC
Q 048394 145 ------------YTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLS-TMYLRLGQPEKVRPLVNQMKQRNIS 211 (485)
Q Consensus 145 ------------~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~ 211 (485)
.---+|.+.....-.+++|++++.+....+ |+-...|.-+ -+|.+..-++-+.+++.-.... ++
T Consensus 140 ~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~p 216 (557)
T KOG3785|consen 140 ILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FP 216 (557)
T ss_pred HHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CC
Confidence 111223333333456788888888887654 4555555444 4566777778888888777765 32
Q ss_pred ccHHHHHHHHHHHHh--cCCH---------------------------------hHHHHHHHHHHhccCCCCcHHHHHHH
Q 048394 212 LDNLTYIVWMQSYSH--LNDI---------------------------------DGVERVFYEMCNECEDKCRWTTYSNL 256 (485)
Q Consensus 212 p~~~~~~~l~~~~~~--~~~~---------------------------------~~a~~~~~~~~~~~~~~~~~~~~~~l 256 (485)
-+....|.......+ .|+. +.|++++-.+.+ ..| ..-..|
T Consensus 217 dStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~---~IP--EARlNL 291 (557)
T KOG3785|consen 217 DSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK---HIP--EARLNL 291 (557)
T ss_pred CcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh---hCh--Hhhhhh
Confidence 233333333322222 1221 112222222221 112 222346
Q ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC-------hhhHHHHHHHhhhcCCC--ChhhHHHHHHH
Q 048394 257 ASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSN-------LDAVNRVWGILKSTFPP--TNTSYLVLLQA 327 (485)
Q Consensus 257 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~--~~~~~~~l~~~ 327 (485)
+--|.+.+++.+|..+.+. ..|.++.-|..-.-.....|+ ..-|.+.|.-.-..+.. +...-.++..+
T Consensus 292 ~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 292 IIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred eeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 6677888999999988877 556555555444444444443 34566666655555554 44455677788
Q ss_pred HHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHH
Q 048394 328 LAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLD 407 (485)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 407 (485)
+.-..++++.+-.++.+..--..-|...+| +.++++..|++.+|+++|-++....+ +.+..-...|.+.|.+.++++
T Consensus 369 fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i--kn~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI--KNKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh--hhhHHHHHHHHHHHHhcCCch
Confidence 888889999999999888876666677777 88999999999999999988776654 444333455677889999999
Q ss_pred HHHHHHHHHHHHhhhcCCCccHHHHHHHH-HHHhhcCChhhHHHHHHHHhhcCC
Q 048394 408 LALNEMEAALSEAKQFHWRPMQVTVDTFF-RFFEEEKDVDGAEEFCKVLKSLNC 460 (485)
Q Consensus 408 ~A~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~A~~~~~~~~~~~~ 460 (485)
.|++++-++-. +.+..+...+| ..|.+.+.+--|-+.|+.+...+|
T Consensus 446 lAW~~~lk~~t-------~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 446 LAWDMMLKTNT-------PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHHHHHHhcCC-------chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 99887766532 23344444444 788889998888899998888776
No 66
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.51 E-value=7.6e-10 Score=101.50 Aligned_cols=394 Identities=12% Similarity=0.074 Sum_probs=258.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCC-CHhHHHHHHHHH
Q 048394 76 KDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAK-NRYTYGALLNCY 154 (485)
Q Consensus 76 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~ 154 (485)
...+..+.-.+...+++++|++.|......+ +-|...+.-+.-.-++.|+++.....-....+..| ....|..+..++
T Consensus 75 ~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~ 153 (700)
T KOG1156|consen 75 HVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQ 153 (700)
T ss_pred chhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3334444444455689999999999998887 45666776666666788899988888888877334 456788999899
Q ss_pred HhcCcHHHHHHHHHHHHhCC-CCCChhhHHHHHHH------HHhCCCcccHHHHHHHHHHcCCCccHHHH-HHHHHHHHh
Q 048394 155 CKELMTERALALFEKMDELK-FLGNTVAFNNLSTM------YLRLGQPEKVRPLVNQMKQRNISLDNLTY-IVWMQSYSH 226 (485)
Q Consensus 155 ~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~------~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~ 226 (485)
.-.|+...|..++++..+.. ..|+...|...... ..+.|.++.|.+.+..-... + .|...+ .+-...+.+
T Consensus 154 ~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~k 231 (700)
T KOG1156|consen 154 HLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMK 231 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHH
Confidence 99999999999999987654 34566666544432 34577778887777665543 2 243333 344567889
Q ss_pred cCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHH-HHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHH
Q 048394 227 LNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAE-LALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNR 305 (485)
Q Consensus 227 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 305 (485)
.+++++|..++..+.. .+|.+...|..+..++.+..+.-++. .+|....+..|.....-..=+.......-.+..-.
T Consensus 232 l~~lEeA~~~y~~Ll~--rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdk 309 (700)
T KOG1156|consen 232 LGQLEEAVKVYRRLLE--RNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDK 309 (700)
T ss_pred HhhHHhHHHHHHHHHh--hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHH
Confidence 9999999999999998 67777777777777776444444444 66666665444322222222222222333344555
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH----cc----------CCCCHHhH--HHHHHHHHhcCcH
Q 048394 306 VWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWES----RC----------SSYDMRLA--DVIIRAYLQKDMY 369 (485)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~~~--~~l~~~~~~~~~~ 369 (485)
++..+.+.|.+ .++..+...|-.....+-.+++...+.. .| -.|....| -.++..|-..|++
T Consensus 310 yL~~~l~Kg~p--~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~ 387 (700)
T KOG1156|consen 310 YLRPLLSKGVP--SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDY 387 (700)
T ss_pred HHHHHhhcCCC--chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccH
Confidence 66666666665 3333444444332222222222222221 11 13444444 4567788899999
Q ss_pred HHHHHHHHHHHhcccccCCchh-HHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhH
Q 048394 370 EEAALIFNNAKKRANASARFFK-SRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGA 448 (485)
Q Consensus 370 ~~A~~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 448 (485)
+.|..+++..+.. .|+.. .|..-.+.+...|++++|..++++..+. ..+|...=..-.....+.+..++|
T Consensus 388 ~~A~~yId~AIdH----TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el-----D~aDR~INsKcAKYmLrAn~i~eA 458 (700)
T KOG1156|consen 388 EVALEYIDLAIDH----TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL-----DTADRAINSKCAKYMLRANEIEEA 458 (700)
T ss_pred HHHHHHHHHHhcc----CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----cchhHHHHHHHHHHHHHccccHHH
Confidence 9999999998876 55543 3444457788999999999999999987 446665555666777889999999
Q ss_pred HHHHHHHhhcCCC---C----HHHHHHH--HHHHHHhCCCcchhcC
Q 048394 449 EEFCKVLKSLNCL---D----FSAYSLL--IKTYIAAGKLASDMRQ 485 (485)
Q Consensus 449 ~~~~~~~~~~~~~---~----~~~~~~l--~~~~~~~g~~~~A~~~ 485 (485)
.++....-+.+.. + .-.|..+ +.+|.+.|++-.|+|+
T Consensus 459 ~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKk 504 (700)
T KOG1156|consen 459 EEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKK 504 (700)
T ss_pred HHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHH
Confidence 9999888775531 1 1234333 5678888888888764
No 67
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=1.4e-09 Score=98.81 Aligned_cols=413 Identities=13% Similarity=0.089 Sum_probs=244.9
Q ss_pred hhHHHHHHhhcCCCCcHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 048394 44 DKLYKRLSALGATGGSVTGALNAYIM--EGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLT 121 (485)
Q Consensus 44 ~~l~~~l~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (485)
..++..+.+.+. .+.+++++....+ .+.+.+...+..-+-++.+.++|++|+.+.+.-... ..+..-+---.-+.
T Consensus 13 ~~l~t~ln~~~~-~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 13 EALLTDLNRHGK-NGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHHHHHhcc-chHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHH
Confidence 567777777554 5666666655433 244677788888888899999999999665542111 11111111113344
Q ss_pred HhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hCCCcccHHH
Q 048394 122 AKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYL-RLGQPEKVRP 200 (485)
Q Consensus 122 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~ 200 (485)
.+.+..++|+..++.... -+..+...-...+.+.|++++|+++|+.+.+.+.. .+...+.+-+ ..+---.+
T Consensus 90 Yrlnk~Dealk~~~~~~~--~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a~~a~l~~-- 161 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDR--LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLAVAAALQV-- 161 (652)
T ss_pred HHcccHHHHHHHHhcccc--cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHhhhH--
Confidence 578999999999985543 23445555566778899999999999999877544 2322222111 11111111
Q ss_pred HHHHHHHcCCCccHHHHHHHHH---HHHhcCCHhHHHHHHHHHHhc------cCCCC--cHH-----HHHHHHHHHHhcc
Q 048394 201 LVNQMKQRNISLDNLTYIVWMQ---SYSHLNDIDGVERVFYEMCNE------CEDKC--RWT-----TYSNLASIYVKAE 264 (485)
Q Consensus 201 ~~~~~~~~~~~p~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~------~~~~~--~~~-----~~~~l~~~~~~~~ 264 (485)
+.+......| ..+|..+.+ .+...|++.+|+++++...+. .+..- +.. .-.-+...+...|
T Consensus 162 --~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 162 --QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred --HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 1222222333 334544443 456789999999999988220 01111 111 1123455667889
Q ss_pred cHHHHHHHHHHHHhcCCCChHHH----HHHHHHHHhcCChh-hHHHHH--------------------------------
Q 048394 265 LFEKAELALKKLEEMKPRDRKAY----HFLISLYCNTSNLD-AVNRVW-------------------------------- 307 (485)
Q Consensus 265 ~~~~A~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~-~a~~~~-------------------------------- 307 (485)
+-++|..++....+..++|.... |.++..-....-.+ .++..+
T Consensus 239 qt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred chHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999666665333 33332221111111 000000
Q ss_pred --------HHhhhcCCC--ChhhHHHHHHHHHh--cCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHH
Q 048394 308 --------GILKSTFPP--TNTSYLVLLQALAK--LNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALI 375 (485)
Q Consensus 308 --------~~~~~~~~~--~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 375 (485)
++.....+. ....+..++..+.+ ......+.+++....+..+.-...+.-.++......|+++.|.++
T Consensus 319 ~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 319 FTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred HhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 111111222 23333444443332 224566677777666655443455666677888899999999999
Q ss_pred HH--------HHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHH----HHHHhhcC
Q 048394 376 FN--------NAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTF----FRFFEEEK 443 (485)
Q Consensus 376 ~~--------~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~ 443 (485)
+. .+.+.+. .|-. ...+...+.+.++-+.|..++.+.+..-.. ..+.......+ ...-.+.|
T Consensus 399 l~~~~~~~~ss~~~~~~--~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~--~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 399 LSLFLESWKSSILEAKH--LPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRK--QQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHhhhhhhhhhhhcc--ChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHH--hcccchHHHhHHHHHhHHHHhcC
Confidence 99 5555554 5544 345666677777777777777777654211 11222333333 33445679
Q ss_pred ChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 048394 444 DVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAA 476 (485)
Q Consensus 444 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 476 (485)
+-++|..+++++.+..|++..+...++.+|++.
T Consensus 473 ~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFNPNDTDLLVQLVTAYARL 505 (652)
T ss_pred chHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999874
No 68
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.48 E-value=7.6e-10 Score=103.98 Aligned_cols=259 Identities=17% Similarity=0.126 Sum_probs=119.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHH-HHHHHHHHh-----
Q 048394 83 VRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTY-GALLNCYCK----- 156 (485)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~li~~~~~----- 156 (485)
...+...|++++|++.++.-... +......+......+.+.|+.++|..++..+.+..|+...| ..+..+..-
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccc
Confidence 34455666666666666554333 22223334445556666666666666666666644444433 333333311
Q ss_pred cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCc-ccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHH
Q 048394 157 ELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQP-EKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVER 235 (485)
Q Consensus 157 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 235 (485)
..+.+....+++++...- |...+...+.-.+.....+ ..+..++..+..+|++ .+|+.+-..|....+.+-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 124555566666665543 3333332222222222222 2333444555555542 234444444444444444444
Q ss_pred HHHHHHhcc-------------CCCCcH--HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCh
Q 048394 236 VFYEMCNEC-------------EDKCRW--TTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNL 300 (485)
Q Consensus 236 ~~~~~~~~~-------------~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 300 (485)
++....... ..+|+. .++..+...|-..|++++|++.+++..+..|..+..|..-...+-+.|++
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH
Confidence 444433210 012222 12233344444455555555555555444444444555555555555555
Q ss_pred hhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 048394 301 DAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESR 347 (485)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 347 (485)
.+|.+.++..+.....|...-+..+..+.+.|++++|.+++....+.
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 55555555554444444444444444444555555555544444443
No 69
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=4.4e-10 Score=95.56 Aligned_cols=378 Identities=12% Similarity=0.033 Sum_probs=228.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcc-cCCCHhHHHHHHHHHHhcCcHH
Q 048394 83 VRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE-YAKNRYTYGALLNCYCKELMTE 161 (485)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~ 161 (485)
+.-+...+++..|+.+++.-...+-+-...+-..+..++.+.|++++|...+..+.+ ..++...+..|.-++.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 444667788999999998765444222222333345567789999999999998877 7788888888888888889999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 048394 162 RALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMC 241 (485)
Q Consensus 162 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 241 (485)
+|..+-.+..+ ++..-..|.....+.++-++...+-+.+.+. ...-..|.......-.+.+|+.++....
T Consensus 109 eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988766443 3334455556666777766666665555442 1223345555555667889999999988
Q ss_pred hccCCCCcHHHHH-HHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCC-----
Q 048394 242 NECEDKCRWTTYS-NLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFP----- 315 (485)
Q Consensus 242 ~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----- 315 (485)
. ..|.....| .+.-+|.+..-++-+.++++...+..|.++.+.|..+....+.=+-..|.+-.+.+.+.+.
T Consensus 179 ~---dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f 255 (557)
T KOG3785|consen 179 Q---DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPF 255 (557)
T ss_pred h---cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchh
Confidence 7 233333222 2566777888888888888888887777777777665554442222222221111111110
Q ss_pred -----------------------C----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHH-----HH
Q 048394 316 -----------------------P----TNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIR-----AY 363 (485)
Q Consensus 316 -----------------------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-----~~ 363 (485)
+ -+.+-..|+--|.+.+++.+|..+.+++.-. .|-......++. -.
T Consensus 256 ~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~ 333 (557)
T KOG3785|consen 256 IEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQET 333 (557)
T ss_pred HHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhc
Confidence 0 1122333455567888999988887765321 222222222221 11
Q ss_pred HhcCcHHHHHHHHHHHHhcccccCCch-hHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhc
Q 048394 364 LQKDMYEEAALIFNNAKKRANASARFF-KSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEE 442 (485)
Q Consensus 364 ~~~~~~~~A~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 442 (485)
.......-|.+.|+-.-+.+. .-|. .--.++...+.-..++++.+.+++.+..- +..|...-..+..+....
T Consensus 334 gSreHlKiAqqffqlVG~Sa~--ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-----F~NdD~Fn~N~AQAk~at 406 (557)
T KOG3785|consen 334 GSREHLKIAQQFFQLVGESAL--ECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-----FTNDDDFNLNLAQAKLAT 406 (557)
T ss_pred CcHHHHHHHHHHHHHhccccc--ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCcchhhhHHHHHHHHh
Confidence 122234556666655444332 2221 11234445555566777777777776665 555555555667777777
Q ss_pred CChhhHHHHHHHHhhcCCCCHHHH-HHHHHHHHHhCCCcch
Q 048394 443 KDVDGAEEFCKVLKSLNCLDFSAY-SLLIKTYIAAGKLASD 482 (485)
Q Consensus 443 ~~~~~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A 482 (485)
|++.+|+++|-++......|..+| ..|+++|.++|+++-|
T Consensus 407 gny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 407 GNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred cChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 888888877766665544454444 4566777777776655
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.8e-09 Score=93.83 Aligned_cols=296 Identities=10% Similarity=0.023 Sum_probs=228.0
Q ss_pred CCChhhHHHHHHHH--HhCCCcccHHHHHHHHHHcC-CCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHH
Q 048394 176 LGNTVAFNNLSTMY--LRLGQPEKVRPLVNQMKQRN-ISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTT 252 (485)
Q Consensus 176 ~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 252 (485)
.|+..+...-+.++ +..++...+...+-.+.... ++-|+.....+.+++...|+.++|+..|++... -.+.+...
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~ 268 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEA 268 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhh
Confidence 33333434444443 44566666666655554433 555677888899999999999999999999876 45555555
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcC
Q 048394 253 YSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLN 332 (485)
Q Consensus 253 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 332 (485)
.....-.+.+.|+.+....+...+..........|..-+......++++.|+.+-++..+..+.+...+..-...+...|
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhcc
Confidence 55555666788999999998888887666677778777888888999999999999999988888888888888899999
Q ss_pred ChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHH-HHHH-hcccHHHHH
Q 048394 333 AIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFM-IYYL-RSRQLDLAL 410 (485)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~ 410 (485)
+.++|.-.|+......+. +...|..|+.+|...|++.+|..+-....+.- ..+..+...+. ..+. .-..-++|.
T Consensus 349 R~~~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~---~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRLF---QNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred chHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh---hcchhhhhhhcceeeccCchhHHHHH
Confidence 999999999998877544 78999999999999999999998877655431 33444554442 2222 333458899
Q ss_pred HHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcchhc
Q 048394 411 NEMEAALSEAKQFHWRPM-QVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDMR 484 (485)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 484 (485)
+++++.+... |+ ......+...|...|..+.++.++++.+... +|....+.|++.+...+.+++|+.
T Consensus 425 kf~ek~L~~~------P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~-~D~~LH~~Lgd~~~A~Ne~Q~am~ 492 (564)
T KOG1174|consen 425 KFAEKSLKIN------PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF-PDVNLHNHLGDIMRAQNEPQKAME 492 (564)
T ss_pred HHHHhhhccC------CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc-cccHHHHHHHHHHHHhhhHHHHHH
Confidence 9999988863 65 4466777789999999999999999999865 477788999999999999999875
No 71
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.44 E-value=5.5e-11 Score=112.42 Aligned_cols=365 Identities=10% Similarity=0.052 Sum_probs=240.2
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccC
Q 048394 62 GALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYA 141 (485)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 141 (485)
.++-.+...|+.|+..+|..++..||..|+.+.|- +|.-|.-...+.+...++.++......++.+.+. .
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------e 80 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------E 80 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------C
Confidence 46667777899999999999999999999999988 8888877777778888999988888888877665 4
Q ss_pred CCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHH-cCCCccHHHHHHH
Q 048394 142 KNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQ-RNISLDNLTYIVW 220 (485)
Q Consensus 142 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~l 220 (485)
|...+|..|..+|...||+.. |+...+ -...+...+...|.-.....++..+.- .+.-||..+ +
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~ 145 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---A 145 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---H
Confidence 788899999999999998876 333332 223344556666666666666555332 234455543 4
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhc-ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC
Q 048394 221 MQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKA-ELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSN 299 (485)
Q Consensus 221 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (485)
+......|-++.+++++..+.......|... ++.-+... ..+++-....+...+ .+++.+|..+++.-...|+
T Consensus 146 illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e--~~~s~~l~a~l~~alaag~ 219 (1088)
T KOG4318|consen 146 ILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE--APTSETLHAVLKRALAAGD 219 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc--CCChHHHHHHHHHHHhcCc
Confidence 4455667888888888877765333333222 23322222 233443333333322 5799999999999999999
Q ss_pred hhhHHHHHHHhhhcCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHH
Q 048394 300 LDAVNRVWGILKSTFPP-TNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNN 378 (485)
Q Consensus 300 ~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 378 (485)
.+.|..++..|++.|.+ +..-|-.|+-+ .++...++.++.-|.+.|+.|+..|+..-+..+..+|....+.
T Consensus 220 ~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~----- 291 (1088)
T KOG4318|consen 220 VDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE----- 291 (1088)
T ss_pred hhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc-----
Confidence 99999999999999999 66655555544 7888899999999999999999999988877777755522221
Q ss_pred HHhcccccCCchhHHHHHHHHHHhcc----------cHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhH
Q 048394 379 AKKRANASARFFKSRESFMIYYLRSR----------QLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGA 448 (485)
Q Consensus 379 ~~~~~~~~~p~~~~~~~l~~~~~~~g----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 448 (485)
.| .|....+..-..+-.-.| ...-....+.+..-.| +.-...+|..... ...+|.-++.
T Consensus 292 ---e~---sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg----~d~~~aiws~c~~-l~hQgk~e~v 360 (1088)
T KOG4318|consen 292 ---EG---SQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLG----TDILEAIWSMCEK-LRHQGKGEEV 360 (1088)
T ss_pred ---cc---cchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhc----cccchHHHHHHHH-HHHcCCCchH
Confidence 12 233222222222222223 1111222222222233 3333344443333 3347888888
Q ss_pred HHHHHHHhh----cCCCCHHHHHHHHHHHHHh
Q 048394 449 EEFCKVLKS----LNCLDFSAYSLLIKTYIAA 476 (485)
Q Consensus 449 ~~~~~~~~~----~~~~~~~~~~~l~~~~~~~ 476 (485)
+++-..+.. ..+.+...|..+..-|.+.
T Consensus 361 eqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr 392 (1088)
T KOG4318|consen 361 EQLVGQLLNPTLRDSGQNVDAFGALLRQYFRR 392 (1088)
T ss_pred HHHHhhhcCCccccCcchHHHHHHHHHHHHHH
Confidence 888777755 2345778888888777764
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.44 E-value=1.9e-10 Score=102.39 Aligned_cols=242 Identities=12% Similarity=0.027 Sum_probs=152.0
Q ss_pred CCHhHHHHHHHHHHhccCCCCc--HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHH
Q 048394 228 NDIDGVERVFYEMCNECEDKCR--WTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNR 305 (485)
Q Consensus 228 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 305 (485)
+..+.++.-+.++.......|+ ...|..+...|...|+.++|...|++..+..|.+...|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4556666666666652222222 34566677778888888888888888888777788888888888888888888888
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 048394 306 VWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANA 385 (485)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 385 (485)
.|++..+..|.+..++..+..++...|++++|.+.|+...+..+. +. ........+...++.++|...|.+.....
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-- 195 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL-- 195 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC--
Confidence 888888777777777777888888888888888888888776443 22 11111222345667888888886655332
Q ss_pred cCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhh-cC-CCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCC-C
Q 048394 386 SARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQ-FH-WRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCL-D 462 (485)
Q Consensus 386 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~ 462 (485)
.|+...+ .+ .....|+...+ +.++.+.+.... +. .+.....|..+...+.+.|++++|...|+++.+..|+ .
T Consensus 196 -~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 196 -DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred -CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 2322222 22 22334554443 244444322100 00 1123457778888888888888888888888888865 4
Q ss_pred HHHHHHHHHHHHHhCC
Q 048394 463 FSAYSLLIKTYIAAGK 478 (485)
Q Consensus 463 ~~~~~~l~~~~~~~g~ 478 (485)
+..-..+++.....++
T Consensus 271 ~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 271 VEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4444445555444333
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.44 E-value=2.8e-10 Score=91.15 Aligned_cols=204 Identities=14% Similarity=0.021 Sum_probs=152.5
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcC
Q 048394 253 YSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLN 332 (485)
Q Consensus 253 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 332 (485)
..-|.-.|...|+...|..-+++..+.+|.+..+|..+...|.+.|..+.|.+.|++.....+.+..+.|.....+|..|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 34467778888888888888888888888788888888888888888888888888888887777788888888888888
Q ss_pred ChhHHHHHHHHHHHccC-CCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHH
Q 048394 333 AIDILKQCFEEWESRCS-SYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALN 411 (485)
Q Consensus 333 ~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 411 (485)
.+++|...|+.....-. .--..+|..+.-+..+.|+.+.|...|++.++.+ +....+...+.....+.|++..|..
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d---p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD---PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC---cCCChHHHHHHHHHHhcccchHHHH
Confidence 88888888887766421 1134567777777778888888888888887764 3334455566777778888888888
Q ss_pred HHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHH
Q 048394 412 EMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFS 464 (485)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 464 (485)
+++.....+ .++...+-..|+.-...||.+.+.++=..+....|....
T Consensus 195 ~~~~~~~~~-----~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 195 YLERYQQRG-----GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHhcc-----cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 888777763 477777777777777788888887777777777765544
No 74
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.43 E-value=2.8e-10 Score=107.82 Aligned_cols=277 Identities=11% Similarity=0.038 Sum_probs=206.3
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcc--cCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCC
Q 048394 97 EVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE--YAKNRYTYGALLNCYCKELMTERALALFEKMDELK 174 (485)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 174 (485)
.++-.+...|+.|+..||..+|.-|+..|+++.|- +|.-|.- .+-+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45667788999999999999999999999999998 7777655 6667789999999999999988877
Q ss_pred CCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHH
Q 048394 175 FLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYS 254 (485)
Q Consensus 175 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 254 (485)
.|...||..|..+|...||... |+...+ ....+...+...|--.....++..+.-..+..||...
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n-- 144 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN-- 144 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH--
Confidence 5788899999999999999766 333322 1223444555666666666666655443567777776
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcC-CCChhhHHHHHHHHHhcCC
Q 048394 255 NLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTF-PPTNTSYLVLLQALAKLNA 333 (485)
Q Consensus 255 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 333 (485)
.+......|-++.+++++..+-......+... +++-+... +....++........ .++..+|..++.+-...|+
T Consensus 145 -~illlv~eglwaqllkll~~~Pvsa~~~p~~v--fLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~ 219 (1088)
T KOG4318|consen 145 -AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV--FLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGD 219 (1088)
T ss_pred -HHHHHHHHHHHHHHHHHHhhCCcccccchHHH--HHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCc
Confidence 77777788889999888876543111121212 24433332 233444444433322 2489999999999999999
Q ss_pred hhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHH
Q 048394 334 IDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLA 409 (485)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 409 (485)
.+.|..++.+|.+.|...+.+-|-.|+-+ .++..-+..++..|.+.|+ .|+..|+...+..+..+|....+
T Consensus 220 ~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv--~p~seT~adyvip~l~N~~t~~~ 290 (1088)
T KOG4318|consen 220 VDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGV--QPGSETQADYVIPQLSNGQTKYG 290 (1088)
T ss_pred hhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcC--CCCcchhHHHHHhhhcchhhhhc
Confidence 99999999999999999898888888766 7888999999999999999 99999998888777776554433
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.43 E-value=3.8e-10 Score=104.66 Aligned_cols=244 Identities=13% Similarity=0.085 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhc-----cCCCCcHHH-HHHHHHHHHhcccHHHHHHHHHHHHhc-----CC-
Q 048394 214 NLTYIVWMQSYSHLNDIDGVERVFYEMCNE-----CEDKCRWTT-YSNLASIYVKAELFEKAELALKKLEEM-----KP- 281 (485)
Q Consensus 214 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~- 281 (485)
..++..+...|...|+++.|+.+++...+. +...|...+ .+.+...|...+++++|..+|+++..+ ++
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 455666888888899999998888877662 012333333 345778888899999999999988771 22
Q ss_pred --CChHHHHHHHHHHHhcCChhhHHHHHHHhhhc-------CCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHc---c
Q 048394 282 --RDRKAYHFLISLYCNTSNLDAVNRVWGILKST-------FPP-TNTSYLVLLQALAKLNAIDILKQCFEEWESR---C 348 (485)
Q Consensus 282 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~ 348 (485)
.-..+++.|..+|.+.|++++|...++++.+. ..+ -...++.++..+...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 22456777888899999998888777765431 122 3345677888888999999999999876542 1
Q ss_pred CCC----CHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcc----c-ccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 048394 349 SSY----DMRLADVIIRAYLQKDMYEEAALIFNNAKKRA----N-ASARFFKSRESFMIYYLRSRQLDLALNEMEAALSE 419 (485)
Q Consensus 349 ~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 419 (485)
+.+ -..+++.|...|...|++++|..++++++... - ...-....++.+...|.+.+++.+|.++|.+....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 222 25688999999999999999999999887541 1 00222445778888999999999999999987766
Q ss_pred hhhc--CCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 048394 420 AKQF--HWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKS 457 (485)
Q Consensus 420 ~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 457 (485)
.... +.+....+|..|...|...|+++.|.++.+.+..
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 5321 1222346889999999999999999999988874
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.42 E-value=5.4e-10 Score=89.58 Aligned_cols=198 Identities=11% Similarity=-0.004 Sum_probs=171.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 048394 216 TYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYC 295 (485)
Q Consensus 216 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 295 (485)
+...|.-.|.+.|+...|.+-+++..+ ..|.+..++..+...|.+.|+.+.|.+.|++..+..|.+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 445577789999999999999999998 778888899999999999999999999999999999999999999999999
Q ss_pred hcCChhhHHHHHHHhhhcCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHH
Q 048394 296 NTSNLDAVNRVWGILKSTFPP--TNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAA 373 (485)
Q Consensus 296 ~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 373 (485)
..|++++|...|++......- ...+|..+.-+..+.|+.+.|...|+...+..+. ...+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 999999999999988775433 6788999999999999999999999999988665 5566777889999999999999
Q ss_pred HHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 048394 374 LIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSE 419 (485)
Q Consensus 374 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 419 (485)
.+++.....+ .++..+....|..--..|+.+.+-++=..+...
T Consensus 194 ~~~~~~~~~~---~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRG---GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhcc---cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999988877 577777777777778899988887776666665
No 77
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.40 E-value=1.1e-07 Score=87.61 Aligned_cols=281 Identities=11% Similarity=0.097 Sum_probs=165.9
Q ss_pred CCcccHHHHHHHHHHcCCCcc------HHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCc---HHHHHHHHHHHHhc
Q 048394 193 GQPEKVRPLVNQMKQRNISLD------NLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCR---WTTYSNLASIYVKA 263 (485)
Q Consensus 193 g~~~~a~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 263 (485)
|+..+....|.+..+. +.|. ...|..+.+.|-..|+++.|..+|++..+ ...+.- ..+|......-.+.
T Consensus 361 ~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~-V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK-VPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred CChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc-CCccchHHHHHHHHHHHHHHHhh
Confidence 4455556666666543 2232 23466677778888888888888888877 222222 34555555666667
Q ss_pred ccHHHHHHHHHHHHhcCCC------------------ChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHH
Q 048394 264 ELFEKAELALKKLEEMKPR------------------DRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLL 325 (485)
Q Consensus 264 ~~~~~A~~~~~~~~~~~~~------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 325 (485)
.+++.|+.+++.....+.+ +...|...++.--..|-++....+++++.+....++.......
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyA 518 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYA 518 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 7788888877776542221 2445666666666677778888888888777666555555555
Q ss_pred HHHHhcCChhHHHHHHHHHHHccCCCCH-HhHHHHHHHHHh---cCcHHHHHHHHHHHHhcccccCCchhHHHHHHHH--
Q 048394 326 QALAKLNAIDILKQCFEEWESRCSSYDM-RLADVIIRAYLQ---KDMYEEAALIFNNAKKRANASARFFKSRESFMIY-- 399 (485)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~-- 399 (485)
..+-...-++++.++|++-...-.-|++ ..|+..+.-+.+ ...++.|..+|++.++ |+ +|...-+--|+-+
T Consensus 519 mfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~C--pp~~aKtiyLlYA~l 595 (835)
T KOG2047|consen 519 MFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GC--PPEHAKTIYLLYAKL 595 (835)
T ss_pred HHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cC--CHHHHHHHHHHHHHH
Confidence 5555666677777777765554444443 456665555443 3467888888888888 65 5443322222211
Q ss_pred HHhcccHHHHHHHHHHHHHHhhh-----------------cCCC-------------ccHHHHHHHH---HHHhhcCChh
Q 048394 400 YLRSRQLDLALNEMEAALSEAKQ-----------------FHWR-------------PMQVTVDTFF---RFFEEEKDVD 446 (485)
Q Consensus 400 ~~~~g~~~~A~~~~~~~~~~~~~-----------------~~~~-------------~~~~~~~~l~---~~~~~~~~~~ 446 (485)
--+-|-...|+.+++++...-.. .|.+ |+...-...+ ..-.+.|..+
T Consensus 596 EEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEid 675 (835)
T KOG2047|consen 596 EEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEID 675 (835)
T ss_pred HHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHH
Confidence 12346666777777765443100 0111 2221111111 2224557777
Q ss_pred hHHHHHHHHhhcCCC--CHHHHHHHHHHHHHhCC
Q 048394 447 GAEEFCKVLKSLNCL--DFSAYSLLIKTYIAAGK 478 (485)
Q Consensus 447 ~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 478 (485)
.|..++....+..+| +...|...-..-.+.|+
T Consensus 676 RARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 676 RARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 777777777765544 66777777777777777
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.39 E-value=4.6e-10 Score=104.09 Aligned_cols=239 Identities=18% Similarity=0.106 Sum_probs=180.2
Q ss_pred CCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhc-------CCCChH-HHHHHHHHHHhcCChhhHHHHHHHhhhc---
Q 048394 245 EDKCRWTTYSNLASIYVKAELFEKAELALKKLEEM-------KPRDRK-AYHFLISLYCNTSNLDAVNRVWGILKST--- 313 (485)
Q Consensus 245 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 313 (485)
..|.-..+...+...|...|+++.|+.+++...+. ..+... ..+.+...|...+++++|..+|+++...
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 44555667777999999999999999999998874 223333 3445788899999999999999988653
Q ss_pred --CCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHc-----cC-CCC-HHhHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 048394 314 --FPP---TNTSYLVLLQALAKLNAIDILKQCFEEWESR-----CS-SYD-MRLADVIIRAYLQKDMYEEAALIFNNAKK 381 (485)
Q Consensus 314 --~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 381 (485)
|.. -..+++.|..+|.+.|++++|...++...+- +. .|. ...++.+...+...+++++|..++++..+
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 222 3466788888999999999999888876432 11 122 23456677888999999999999987765
Q ss_pred cc--cccCCc----hhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCcc---HHHHHHHHHHHhhcCChhhHHHHH
Q 048394 382 RA--NASARF----FKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPM---QVTVDTFFRFFEEEKDVDGAEEFC 452 (485)
Q Consensus 382 ~~--~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~ 452 (485)
.- .+ .++ ..+++.|...|...|++++|.+++++++....+.....+ ...++.+...|.+.+++.+|.++|
T Consensus 354 i~~~~~-g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 354 IYLDAP-GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHHhhc-cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHH
Confidence 31 10 222 356889999999999999999999999987644433222 446677888999999999999988
Q ss_pred HHHhh----cCCC---CHHHHHHHHHHHHHhCCCcchhc
Q 048394 453 KVLKS----LNCL---DFSAYSLLIKTYIAAGKLASDMR 484 (485)
Q Consensus 453 ~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~A~~ 484 (485)
.+... .+|. -..+|..|+.+|.+.|++++|++
T Consensus 433 ~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~ 471 (508)
T KOG1840|consen 433 EEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEE 471 (508)
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHH
Confidence 77655 3343 45779999999999999999974
No 79
>PF13041 PPR_2: PPR repeat family
Probab=99.39 E-value=1.1e-12 Score=81.61 Aligned_cols=49 Identities=29% Similarity=0.412 Sum_probs=32.1
Q ss_pred CCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 048394 142 KNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYL 190 (485)
Q Consensus 142 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 190 (485)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666666666666666666666666666666666666666666666655
No 80
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.38 E-value=3.5e-08 Score=90.78 Aligned_cols=389 Identities=10% Similarity=0.112 Sum_probs=229.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHH
Q 048394 83 VRSLRKFGRYRHALEVIEWMESR-KMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTE 161 (485)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 161 (485)
+..+.++|+......+|+..... .+......|...+......+-++.+..++++..+..|. .-+-.|..+++.++++
T Consensus 109 lq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~--~~eeyie~L~~~d~~~ 186 (835)
T KOG2047|consen 109 LQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPE--AREEYIEYLAKSDRLD 186 (835)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHH--HHHHHHHHHHhccchH
Confidence 33444555555555555554322 22222334444455555555555555555555543222 2344444445555555
Q ss_pred HHHHHHHHHHhC----------------------------------------C--CCCCh--hhHHHHHHHHHhCCCccc
Q 048394 162 RALALFEKMDEL----------------------------------------K--FLGNT--VAFNNLSTMYLRLGQPEK 197 (485)
Q Consensus 162 ~A~~~~~~m~~~----------------------------------------~--~~p~~--~~~~~l~~~~~~~g~~~~ 197 (485)
+|.+.+...... | .-+|. ..|.+|...|.+.|.+++
T Consensus 187 eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ek 266 (835)
T KOG2047|consen 187 EAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEK 266 (835)
T ss_pred HHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHH
Confidence 554444443321 1 11222 246888899999999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcC----------------------CHhHHHHHHHHHHhcc----------C
Q 048394 198 VRPLVNQMKQRNISLDNLTYIVWMQSYSHLN----------------------DIDGVERVFYEMCNEC----------E 245 (485)
Q Consensus 198 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~----------------------~~~~a~~~~~~~~~~~----------~ 245 (485)
|..+|++..+. ..+..-|+.+.++|++.. +++-....|+.+.... .
T Consensus 267 arDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQ 344 (835)
T KOG2047|consen 267 ARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQ 344 (835)
T ss_pred HHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhc
Confidence 99999988775 234455555555554421 1223333444443311 2
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHh-cCC-----CChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCC--
Q 048394 246 DKCRWTTYSNLASIYVKAELFEKAELALKKLEE-MKP-----RDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPT-- 317 (485)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-- 317 (485)
.+-++..|..-+.. ..|+..+-...+.++.+ ..| .-...|..+...|-..|+++.|..+|++..+...+.
T Consensus 345 n~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~ 422 (835)
T KOG2047|consen 345 NPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE 422 (835)
T ss_pred CCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence 33344444333333 35677777778888777 333 234678889999999999999999999988766652
Q ss_pred --hhhHHHHHHHHHhcCChhHHHHHHHHHHHccCC-----------------CCHHhHHHHHHHHHhcCcHHHHHHHHHH
Q 048394 318 --NTSYLVLLQALAKLNAIDILKQCFEEWESRCSS-----------------YDMRLADVIIRAYLQKDMYEEAALIFNN 378 (485)
Q Consensus 318 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 378 (485)
..+|..-...=.+..+++.|.++.+......-. -+...|...++..-..|-++....++++
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 345555566666788899999988876432111 1234566666666677889999999999
Q ss_pred HHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhh---cCChhhHHHHHHHH
Q 048394 379 AKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEE---EKDVDGAEEFCKVL 455 (485)
Q Consensus 379 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~ 455 (485)
+++..+. .|... ......+-...-++++.+.|++-+..- .++.-...|+..+..+.+ ..+.+.|..+|+++
T Consensus 503 iidLria-TPqii--~NyAmfLEeh~yfeesFk~YErgI~LF---k~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 503 IIDLRIA-TPQII--INYAMFLEEHKYFEESFKAYERGISLF---KWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHhcC-CHHHH--HHHHHHHHhhHHHHHHHHHHHcCCccC---CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9987652 23221 122223345667888999998877762 122234578777755543 23578999999999
Q ss_pred hhcCCCC--HHHHHHHHHHHHHhCCCcchh
Q 048394 456 KSLNCLD--FSAYSLLIKTYIAAGKLASDM 483 (485)
Q Consensus 456 ~~~~~~~--~~~~~~l~~~~~~~g~~~~A~ 483 (485)
++..|+. ...|...+..-.+.|--..||
T Consensus 577 L~~Cpp~~aKtiyLlYA~lEEe~GLar~am 606 (835)
T KOG2047|consen 577 LDGCPPEHAKTIYLLYAKLEEEHGLARHAM 606 (835)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9977762 234555555555555444443
No 81
>PF13041 PPR_2: PPR repeat family
Probab=99.36 E-value=1.5e-12 Score=81.05 Aligned_cols=50 Identities=28% Similarity=0.472 Sum_probs=45.2
Q ss_pred CChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 048394 177 GNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSH 226 (485)
Q Consensus 177 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 226 (485)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78889999999999999999999999999999999999999999998864
No 82
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.36 E-value=2.2e-08 Score=93.97 Aligned_cols=383 Identities=12% Similarity=-0.011 Sum_probs=261.4
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhccc---CCCH
Q 048394 68 IMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEY---AKNR 144 (485)
Q Consensus 68 ~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~ 144 (485)
....+..++..|..+.-++...|+++.+.+.|++....-+ .....|..+...+...|.-..|..+++..... ++|.
T Consensus 315 r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~ 393 (799)
T KOG4162|consen 315 RLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI 393 (799)
T ss_pred HHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc
Confidence 3345667899999999999999999999999999866543 45677888888888999999999999887663 3344
Q ss_pred hHHHHHHHHHH-hcCcHHHHHHHHHHHHhC--CCC--CChhhHHHHHHHHHhC-----------CCcccHHHHHHHHHHc
Q 048394 145 YTYGALLNCYC-KELMTERALALFEKMDEL--KFL--GNTVAFNNLSTMYLRL-----------GQPEKVRPLVNQMKQR 208 (485)
Q Consensus 145 ~~~~~li~~~~-~~~~~~~A~~~~~~m~~~--~~~--p~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~ 208 (485)
..+-..-..|. +.+.+++++.+-.+.... +.. .....|..+.-+|... ....++++.+++..+.
T Consensus 394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~ 473 (799)
T KOG4162|consen 394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF 473 (799)
T ss_pred hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence 44444444444 357778877777776651 111 1233454444444332 1235788888888775
Q ss_pred C-CCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCh---
Q 048394 209 N-ISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDR--- 284 (485)
Q Consensus 209 ~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--- 284 (485)
+ -.|+...| +.--|+..++++.|....++..+ -+...+...|..++-.+.-.+++.+|+.+.+......+.|.
T Consensus 474 d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~-l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~ 550 (799)
T KOG4162|consen 474 DPTDPLVIFY--LALQYAEQRQLTSALDYAREALA-LNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLM 550 (799)
T ss_pred CCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHH-hcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhc
Confidence 4 33444433 33346778889999999998888 44566777777788888888999999998888776333221
Q ss_pred -----------------HHHHHHHHHHH------h---cC--------------ChhhHHHHHHHh--------hhcC--
Q 048394 285 -----------------KAYHFLISLYC------N---TS--------------NLDAVNRVWGIL--------KSTF-- 314 (485)
Q Consensus 285 -----------------~~~~~l~~~~~------~---~~--------------~~~~a~~~~~~~--------~~~~-- 314 (485)
.|...++..+- . .| +..++.+...++ ...+
T Consensus 551 ~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se 630 (799)
T KOG4162|consen 551 DGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSE 630 (799)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccc
Confidence 11111111111 0 00 111111111110 0111
Q ss_pred ---C-----C-C-------hhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHH
Q 048394 315 ---P-----P-T-------NTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNN 378 (485)
Q Consensus 315 ---~-----~-~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 378 (485)
+ + . ...|......+.+.+..++|...+.+..+..+. ....|......+...|.+++|.+.|..
T Consensus 631 ~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 631 LKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred cccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 0 0 0 122345566677788888888888877766433 667777777888899999999999998
Q ss_pred HHhcccccCCchhHHHHHHHHHHhcccHHHHHH--HHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHh
Q 048394 379 AKKRANASARFFKSRESFMIYYLRSRQLDLALN--EMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLK 456 (485)
Q Consensus 379 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 456 (485)
....+ +.++.....+...+.+.|+..-|.. ++..+.+. .+.++..|..+...+.+.|+.+.|...|..+.
T Consensus 710 Al~ld---P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~-----dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 710 ALALD---PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL-----DPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHhcC---CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 88774 3445667788889999998888887 99999998 45678999999999999999999999999999
Q ss_pred hcCCCCH
Q 048394 457 SLNCLDF 463 (485)
Q Consensus 457 ~~~~~~~ 463 (485)
++.+.+|
T Consensus 782 qLe~S~P 788 (799)
T KOG4162|consen 782 QLEESNP 788 (799)
T ss_pred hhccCCC
Confidence 9876544
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.35 E-value=4e-10 Score=100.28 Aligned_cols=207 Identities=13% Similarity=-0.049 Sum_probs=155.4
Q ss_pred ccHHHHHHHHHHHHhcCC----CChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHH
Q 048394 264 ELFEKAELALKKLEEMKP----RDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQ 339 (485)
Q Consensus 264 ~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 339 (485)
+..+.++..+.++....+ .....|..+...|...|+.++|...|++..+..|.+...|+.+...+...|++++|.+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 456677777777765222 2256688889999999999999999999999998899999999999999999999999
Q ss_pred HHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 048394 340 CFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSE 419 (485)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 419 (485)
.|+...+..+. +..+|..+..++...|++++|.+.|++..+. .|+..........+...++.++|...+++....
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~----~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD----DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999987655 5777888999999999999999999999987 444332222222334577899999999876654
Q ss_pred hhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHh-------hcCCCCHHHHHHHHHHHHHhCCCcchhc
Q 048394 420 AKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLK-------SLNCLDFSAYSLLIKTYIAAGKLASDMR 484 (485)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 484 (485)
..|+...+ . ......|+...+ ..++.+. +..|....+|..++.++.+.|++++|+.
T Consensus 195 -----~~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~ 257 (296)
T PRK11189 195 -----LDKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAA 257 (296)
T ss_pred -----CCccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 23332222 2 222335665544 3444444 3345567899999999999999999974
No 84
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=1.3e-07 Score=86.29 Aligned_cols=376 Identities=9% Similarity=0.028 Sum_probs=210.0
Q ss_pred CCCcHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhhCCHHHHHHH
Q 048394 56 TGGSVTGALNAYIMEGK-TVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHF-SYTDFAVYLDLTAKTNGIAAAEKY 133 (485)
Q Consensus 56 ~~~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~ 133 (485)
..+.+.+++......+. ..+...+..-..+..+.++.++|+..++- ..+ +..+...-...+.+.|++++|..+
T Consensus 58 q~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdi 132 (652)
T KOG2376|consen 58 QLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDI 132 (652)
T ss_pred hhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHH
Confidence 36778888844444332 22222223445555688999999999982 223 333666667788999999999999
Q ss_pred HHhhcccCCCHhHHHHHHHHHH-hcCcHHHHHHHHHHHHhCCCCCChhhHHHH---HHHHHhCCCcccHHHHHHHHHHc-
Q 048394 134 FNGLSEYAKNRYTYGALLNCYC-KELMTERALALFEKMDELKFLGNTVAFNNL---STMYLRLGQPEKVRPLVNQMKQR- 208 (485)
Q Consensus 134 ~~~~~~~~~~~~~~~~li~~~~-~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~- 208 (485)
|+.+.+. +...+...+.+-+ ..+--..+ ++. ......| ..+|..+ .-.+...|++.+|+++++.....
T Consensus 133 Y~~L~kn--~~dd~d~~~r~nl~a~~a~l~~-~~~---q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~ 205 (652)
T KOG2376|consen 133 YQHLAKN--NSDDQDEERRANLLAVAAALQV-QLL---QSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRIC 205 (652)
T ss_pred HHHHHhc--CCchHHHHHHHHHHHHHHhhhH-HHH---HhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9998651 1111111111110 00000011 011 1212222 2233222 22345566777777766666221
Q ss_pred ------C------CCccHHH-HHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHH---------------
Q 048394 209 ------N------ISLDNLT-YIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIY--------------- 260 (485)
Q Consensus 209 ------~------~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~--------------- 260 (485)
+ +.-...+ -..+.-.+...|+.++|.+++...++ ..++|........+-+
T Consensus 206 ~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~--~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l 283 (652)
T KOG2376|consen 206 REKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIK--RNPADEPSLAVAVNNLVALSKDQNYFDGDLL 283 (652)
T ss_pred HHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH--hcCCCchHHHHHhcchhhhccccccCchHHH
Confidence 0 0000011 11233345556777777776666665 3333332211111100
Q ss_pred ----------------------------------HhcccHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHH--hcCChhhH
Q 048394 261 ----------------------------------VKAELFEKAELALKKLEEMKPRD-RKAYHFLISLYC--NTSNLDAV 303 (485)
Q Consensus 261 ----------------------------------~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~a 303 (485)
.-.+..+.+.++... .++.. ...+..++..+. +...+..+
T Consensus 284 ~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~---lp~~~p~~~~~~ll~~~t~~~~~~~~ka 360 (652)
T KOG2376|consen 284 KSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSAS---LPGMSPESLFPILLQEATKVREKKHKKA 360 (652)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh---CCccCchHHHHHHHHHHHHHHHHHHhhh
Confidence 001112222222221 22211 223333333332 22356778
Q ss_pred HHHHHHhhhcCCC-ChhhHHHHHHHHHhcCChhHHHHHHH--------HHHHccCCCCHHhHHHHHHHHHhcCcHHHHHH
Q 048394 304 NRVWGILKSTFPP-TNTSYLVLLQALAKLNAIDILKQCFE--------EWESRCSSYDMRLADVIIRAYLQKDMYEEAAL 374 (485)
Q Consensus 304 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 374 (485)
..++...-+..+. ...+...++......|+++.|.+++. .+.+.+..| .+...+...+.+.++-+.|..
T Consensus 361 ~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~ 438 (652)
T KOG2376|consen 361 IELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASA 438 (652)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHH
Confidence 8888888777777 56677788888899999999999999 555555544 445567777888888888888
Q ss_pred HHHHHHhcccccCCchhHHHH----HHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHH
Q 048394 375 IFNNAKKRANASARFFKSRES----FMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEE 450 (485)
Q Consensus 375 ~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 450 (485)
++.+....-....+....... +...-.+.|+-++|..+++++.+. .++|..+...++.+|.+. |.+.|+.
T Consensus 439 vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-----n~~d~~~l~~lV~a~~~~-d~eka~~ 512 (652)
T KOG2376|consen 439 VLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-----NPNDTDLLVQLVTAYARL-DPEKAES 512 (652)
T ss_pred HHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-----CCchHHHHHHHHHHHHhc-CHHHHHH
Confidence 888776531100222233333 333335789999999999999997 678999999999999876 5788877
Q ss_pred HHHHHh
Q 048394 451 FCKVLK 456 (485)
Q Consensus 451 ~~~~~~ 456 (485)
+-+.+.
T Consensus 513 l~k~L~ 518 (652)
T KOG2376|consen 513 LSKKLP 518 (652)
T ss_pred HhhcCC
Confidence 765553
No 85
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.33 E-value=2.5e-08 Score=84.83 Aligned_cols=216 Identities=11% Similarity=-0.001 Sum_probs=142.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHH---HHHHHhhCCHHHHHHHHHhhcccCCCHhHHH-H
Q 048394 74 VRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVY---LDLTAKTNGIAAAEKYFNGLSEYAKNRYTYG-A 149 (485)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~ 149 (485)
.+..-...+-+.+.-.|++.+|+.-|....+- |+..|.++ ...|...|+-..|+.=|++..+.+||...-. -
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQ 111 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHH
Confidence 44555666777788888888888888776654 33334433 3456677888888888888877777754322 2
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 048394 150 LLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLND 229 (485)
Q Consensus 150 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 229 (485)
-...+.+.|.++.|..=|+..+... |+..+ ...++.+.-. .+++. .....+..+.-.|+
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~-------~~e~~---------~l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLAL-------IQEHW---------VLVQQLKSASGSGD 170 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHh-------HHHHH---------HHHHHHHHHhcCCc
Confidence 2345677888888888888887754 32211 1222222111 11111 11223334456778
Q ss_pred HhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHH
Q 048394 230 IDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGI 309 (485)
Q Consensus 230 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 309 (485)
...|+..+..+.+ -.+-+...|..-..+|...|++..|+.-++...+....+..++..+...+...|+.+.++...++
T Consensus 171 ~~~ai~~i~~llE--i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 171 CQNAIEMITHLLE--IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred hhhHHHHHHHHHh--cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 8888888888877 55667777777788888888888888877777777777777777778888888888888877777
Q ss_pred hhhcCCC
Q 048394 310 LKSTFPP 316 (485)
Q Consensus 310 ~~~~~~~ 316 (485)
..+.+|.
T Consensus 249 CLKldpd 255 (504)
T KOG0624|consen 249 CLKLDPD 255 (504)
T ss_pred HHccCcc
Confidence 7776665
No 86
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.3e-08 Score=91.74 Aligned_cols=381 Identities=13% Similarity=0.007 Sum_probs=223.8
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCC-HhHHHHHHHHHHhcCcHHH
Q 048394 84 RSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKN-RYTYGALLNCYCKELMTER 162 (485)
Q Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~ 162 (485)
.+.+..|+++.|+..|.+..... +++...|+.-..+|++.|++++|++=-.+..+..|+ ...|.-...++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 34567788888888888887776 457778888888888888888888777777766666 4578888888888888888
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhCC---CcccHHHHHHHHHHc---CCCccHHHHHHHHHHHHh----------
Q 048394 163 ALALFEKMDELKFLGNTVAFNNLSTMYLRLG---QPEKVRPLVNQMKQR---NISLDNLTYIVWMQSYSH---------- 226 (485)
Q Consensus 163 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~---------- 226 (485)
|+.-|.+-++.... +...++.+..++.... +.-.--.++..+... ........|..++..+-+
T Consensus 89 A~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 89 AILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 88888888776533 4555666665551110 000000001110000 000001112222211111
Q ss_pred cCCHhHHHHHHHHH-----------HhccCCCC----------------------cHHHHHHHHHHHHhcccHHHHHHHH
Q 048394 227 LNDIDGVERVFYEM-----------CNECEDKC----------------------RWTTYSNLASIYVKAELFEKAELAL 273 (485)
Q Consensus 227 ~~~~~~a~~~~~~~-----------~~~~~~~~----------------------~~~~~~~l~~~~~~~~~~~~A~~~~ 273 (485)
...+..+.-.+... .......| -..-...+++...+..+++.|.+.+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 00011111111000 00000111 1112455777777888888888888
Q ss_pred HHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHH-------HHHHHHhcCChhHHHHHHHHHHH
Q 048394 274 KKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLV-------LLQALAKLNAIDILKQCFEEWES 346 (485)
Q Consensus 274 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~ 346 (485)
....... .+..-++....+|...|.+..+...-....+.|.....-|+. +..++.+.++++.+...|++...
T Consensus 248 ~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt 326 (539)
T KOG0548|consen 248 AKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT 326 (539)
T ss_pred HHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh
Confidence 8888766 566677777788888888887777776666655553333333 33455566778888888887665
Q ss_pred ccCCCCHHhH-------------------------HHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHH
Q 048394 347 RCSSYDMRLA-------------------------DVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYL 401 (485)
Q Consensus 347 ~~~~~~~~~~-------------------------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 401 (485)
....|+...- ..-...+.+.|++.+|...|.+++.++ +-|...|..-.-+|.
T Consensus 327 e~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~---P~Da~lYsNRAac~~ 403 (539)
T KOG0548|consen 327 EHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD---PEDARLYSNRAACYL 403 (539)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC---CchhHHHHHHHHHHH
Confidence 5444332211 111334456677777777777777664 445566666666777
Q ss_pred hcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 048394 402 RSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIA 475 (485)
Q Consensus 402 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 475 (485)
+.|.+..|+.-.+..++. .++....|..=..++.-..+++.|.+.|++.++.+|.+......+.+++..
T Consensus 404 kL~~~~~aL~Da~~~ieL-----~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 404 KLGEYPEALKDAKKCIEL-----DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHhhHHHHHHHHHHHHhc-----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 777777777776666665 233334444444555556677777777777777777766666666665553
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.31 E-value=2.5e-08 Score=92.36 Aligned_cols=310 Identities=12% Similarity=-0.061 Sum_probs=158.7
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC-CCh-hhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHH---H
Q 048394 146 TYGALLNCYCKELMTERALALFEKMDELKFL-GNT-VAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIV---W 220 (485)
Q Consensus 146 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~---l 220 (485)
.|..+...+...|+.+.+.+.+.+....... ++. .........+...|++++|.+++++..+.. +.+...+.. .
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 4444445555555565555555444332211 111 111122233455666666666666666542 222223221 1
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCh
Q 048394 221 MQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNL 300 (485)
Q Consensus 221 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 300 (485)
.......+..+.+.+.++... ...+........+...+...|++++|...+++..+..|.+...+..+..++...|++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 111112344444444444411 233334445455666777777777777777777777776777777777777777777
Q ss_pred hhHHHHHHHhhhcCCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCC-CCHHhH-H--HHHHHHHhcCcHHHH
Q 048394 301 DAVNRVWGILKSTFPP----TNTSYLVLLQALAKLNAIDILKQCFEEWESRCSS-YDMRLA-D--VIIRAYLQKDMYEEA 372 (485)
Q Consensus 301 ~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~-~--~l~~~~~~~~~~~~A 372 (485)
++|...+++.....+. ....|..+...+...|+.++|..++++....... +..... + .++.-+...|....+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 7777777776665442 1233456677777778888888888776543221 111111 1 222223333332222
Q ss_pred HHHHHHHHhcccccCCc-hhHH--HHHHHHHHhcccHHHHHHHHHHHHHHhhh---cCCCc-cHHHHHHHHHHHhhcCCh
Q 048394 373 ALIFNNAKKRANASARF-FKSR--ESFMIYYLRSRQLDLALNEMEAALSEAKQ---FHWRP-MQVTVDTFFRFFEEEKDV 445 (485)
Q Consensus 373 ~~~~~~~~~~~~~~~p~-~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~~~~ 445 (485)
.+. +.+........|. ...+ .....++...|+.++|...++.+...... .+... ..........++...|++
T Consensus 245 ~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~ 323 (355)
T cd05804 245 DRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY 323 (355)
T ss_pred HHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence 222 1111110000011 1112 24455667888888899888888775422 00100 111112222455688899
Q ss_pred hhHHHHHHHHhhcC
Q 048394 446 DGAEEFCKVLKSLN 459 (485)
Q Consensus 446 ~~A~~~~~~~~~~~ 459 (485)
++|.+.+..+....
T Consensus 324 ~~A~~~L~~al~~a 337 (355)
T cd05804 324 ATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998888877643
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=2.5e-08 Score=83.13 Aligned_cols=23 Identities=9% Similarity=0.081 Sum_probs=15.8
Q ss_pred HHHHhhcCChhhHHHHHHHHhhc
Q 048394 436 FRFFEEEKDVDGAEEFCKVLKSL 458 (485)
Q Consensus 436 ~~~~~~~~~~~~A~~~~~~~~~~ 458 (485)
.+.+++..|+..++++|+.-.+-
T Consensus 421 AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 421 AKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHhhccccccHHHHHHHHHHHhh
Confidence 35566777788888887766653
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=3.3e-09 Score=95.49 Aligned_cols=351 Identities=11% Similarity=-0.009 Sum_probs=240.6
Q ss_pred HHHHhhCCHHHHHHHHHhhcc-cCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhCCCcc
Q 048394 119 DLTAKTNGIAAAEKYFNGLSE-YAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGN-TVAFNNLSTMYLRLGQPE 196 (485)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~ 196 (485)
.+....|+++.|...|.+... .++|-..|..-..+|++.|++++|++=-.+-.+.. |+ ...|+-...++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcccHH
Confidence 345678999999999999888 66788889999999999999999998777766654 44 567899999999999999
Q ss_pred cHHHHHHHHHHcCCCccHHHHHHHHHHHHhc---CC---------------------HhH-HHHHHHHHHhccCCCCcHH
Q 048394 197 KVRPLVNQMKQRNISLDNLTYIVWMQSYSHL---ND---------------------IDG-VERVFYEMCNECEDKCRWT 251 (485)
Q Consensus 197 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~---------------------~~~-a~~~~~~~~~~~~~~~~~~ 251 (485)
+|+.-|.+-++.. +.|...++.+..++... ++ .+. -..+++.+.+ .+.+..
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~---~p~~l~ 163 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQK---NPTSLK 163 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhc---CcHhhh
Confidence 9999999988863 44566677777666211 00 000 1111111111 111111
Q ss_pred HH---HHHHHHHHh-----------cc--------cH----HHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcCChhhH
Q 048394 252 TY---SNLASIYVK-----------AE--------LF----EKAELALKKLEE--MKPRDRKAYHFLISLYCNTSNLDAV 303 (485)
Q Consensus 252 ~~---~~l~~~~~~-----------~~--------~~----~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a 303 (485)
.| ..++.+... .| .+ ...........+ ....-..-...+.++..+..+++.|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 11 001111110 00 00 011111111100 0011234456778888888999999
Q ss_pred HHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHH-------HHHHHHHhcCcHHHHHHHH
Q 048394 304 NRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLAD-------VIIRAYLQKDMYEEAALIF 376 (485)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~A~~~~ 376 (485)
.+.+....... .+..-++....+|...|.+..+........+.|-. ...-|+ .+..+|.+.++++.|...|
T Consensus 244 ~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 244 IQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 99999888877 66666788888899999888888777777666533 222222 2444666778899999999
Q ss_pred HHHHhcccccCCchhHHH-------------------------HHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHH
Q 048394 377 NNAKKRANASARFFKSRE-------------------------SFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVT 431 (485)
Q Consensus 377 ~~~~~~~~~~~p~~~~~~-------------------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 431 (485)
++...... .|+..+=. .-...+++.|++..|+..|.+++.. .+.|...
T Consensus 322 ~kaLte~R--t~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr-----~P~Da~l 394 (539)
T KOG0548|consen 322 QKALTEHR--TPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR-----DPEDARL 394 (539)
T ss_pred HHHhhhhc--CHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc-----CCchhHH
Confidence 98876654 55443310 1133467889999999999999988 5667888
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcchhc
Q 048394 432 VDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDMR 484 (485)
Q Consensus 432 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 484 (485)
|..-.-+|.+.|.+..|.+-.+..++++|+....|..=+.++....+|++|+.
T Consensus 395 YsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAle 447 (539)
T KOG0548|consen 395 YSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALE 447 (539)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988888888888888764
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.28 E-value=2.6e-08 Score=92.19 Aligned_cols=301 Identities=11% Similarity=-0.022 Sum_probs=194.7
Q ss_pred hhhHHHHHHHHHhCCCcccHHHHHHHHHHcCC-CccHHH-HHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHH
Q 048394 179 TVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNI-SLDNLT-YIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNL 256 (485)
Q Consensus 179 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 256 (485)
...|..+...+...|+.+.+.+.+....+... .++... .......+...|++++|.+.+++..+ ..|.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~--~~P~~~~a~~~- 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLD--DYPRDLLALKL- 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHH-
Confidence 34566677777778888888777777655321 222221 22223456778999999999999988 45556555442
Q ss_pred HHHHHh----cccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcC
Q 048394 257 ASIYVK----AELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLN 332 (485)
Q Consensus 257 ~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 332 (485)
...+.. .+..+.+.+.+.......|........+...+...|++++|...+++..+..+.+...+..+...+...|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 223322 3455555555554222444455666677788999999999999999999998888888999999999999
Q ss_pred ChhHHHHHHHHHHHccCC-CC--HHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHH-H--HHHHHHHhcccH
Q 048394 333 AIDILKQCFEEWESRCSS-YD--MRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSR-E--SFMIYYLRSRQL 406 (485)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~-~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~ 406 (485)
++++|...+++..+.... |+ ...|..+...+...|++++|..++++....... .+..... + .++.-+...|..
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE-SDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC-CChHHHHhhHHHHHHHHHhcCCC
Confidence 999999999998876432 22 234557888899999999999999998644210 1111111 1 222223344443
Q ss_pred HHHHHHHHHHHHHhhhc-CCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCC---------CHHHHHHHHHHHHHh
Q 048394 407 DLALNEMEAALSEAKQF-HWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCL---------DFSAYSLLIKTYIAA 476 (485)
Q Consensus 407 ~~A~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~ 476 (485)
+.+.++ +.+....... ..............++...|+.+.|...++.+...... ........+.++.+.
T Consensus 242 ~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 242 DVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred ChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 333332 2222221000 01111222235667788999999999999888663321 355566777788899
Q ss_pred CCCcchhc
Q 048394 477 GKLASDMR 484 (485)
Q Consensus 477 g~~~~A~~ 484 (485)
|++++|++
T Consensus 321 g~~~~A~~ 328 (355)
T cd05804 321 GNYATALE 328 (355)
T ss_pred CCHHHHHH
Confidence 99998864
No 91
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=5.4e-10 Score=101.27 Aligned_cols=227 Identities=12% Similarity=0.071 Sum_probs=168.9
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHH
Q 048394 246 DKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLL 325 (485)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 325 (485)
..|++.. ...-+.+.|++.+|.-.|+...+..|.+..+|..|.......++-..|+..+.+..+..|.+..+...|.
T Consensus 284 ~~pdPf~---eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLA 360 (579)
T KOG1125|consen 284 DHPDPFK---EGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALA 360 (579)
T ss_pred CCCChHH---HHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 3455544 5566677888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhcCChhHHHHHHHHHHHccCCC--------CHHhHHHHHHHHHhcCcHHHHHHHHHHHHh-cccccCCchhHHHHH
Q 048394 326 QALAKLNAIDILKQCFEEWESRCSSY--------DMRLADVIIRAYLQKDMYEEAALIFNNAKK-RANASARFFKSRESF 396 (485)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~p~~~~~~~l 396 (485)
-.|...|.-..|...+.......++- +...-+. ..+.....+.+..++|-++.. .+. .+|+.....|
T Consensus 361 VSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~--~~DpdvQ~~L 436 (579)
T KOG1125|consen 361 VSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPT--KIDPDVQSGL 436 (579)
T ss_pred HHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCC--CCChhHHhhh
Confidence 88888888888888888876653220 0000000 112222334455555555543 333 4677777777
Q ss_pred HHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 048394 397 MIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAA 476 (485)
Q Consensus 397 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 476 (485)
.-.|--.|++++|+++|+.++.. .+-|...|+.|.-.+....+.++|+..|++++++.|.-+.++..|+-.|...
T Consensus 437 GVLy~ls~efdraiDcf~~AL~v-----~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl 511 (579)
T KOG1125|consen 437 GVLYNLSGEFDRAVDCFEAALQV-----KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNL 511 (579)
T ss_pred HHHHhcchHHHHHHHHHHHHHhc-----CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh
Confidence 77788888889999999888886 4556778888888888888888899999999888888888888888888888
Q ss_pred CCCcchhc
Q 048394 477 GKLASDMR 484 (485)
Q Consensus 477 g~~~~A~~ 484 (485)
|.|++|++
T Consensus 512 G~ykEA~~ 519 (579)
T KOG1125|consen 512 GAYKEAVK 519 (579)
T ss_pred hhHHHHHH
Confidence 88888875
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.22 E-value=5.2e-10 Score=97.92 Aligned_cols=81 Identities=16% Similarity=0.081 Sum_probs=31.7
Q ss_pred hhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcH-HHHHHHHHH
Q 048394 300 LDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMY-EEAALIFNN 378 (485)
Q Consensus 300 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~ 378 (485)
+.+|..+|+++.+..+++..+.+.+..++...|++++|.+++.+..+.... ++.+...++.+....|+. +.+.+++.+
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 444444444444433334444444444444444444444444444333322 333333333333333333 334444444
Q ss_pred HHh
Q 048394 379 AKK 381 (485)
Q Consensus 379 ~~~ 381 (485)
+..
T Consensus 262 L~~ 264 (290)
T PF04733_consen 262 LKQ 264 (290)
T ss_dssp CHH
T ss_pred HHH
Confidence 443
No 93
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.21 E-value=7e-08 Score=82.15 Aligned_cols=324 Identities=12% Similarity=0.002 Sum_probs=213.3
Q ss_pred HHHHHHHhhCCHHHHHHHHHhhcccCCCH-hHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhH-HHHHHHHHhCC
Q 048394 116 VYLDLTAKTNGIAAAEKYFNGLSEYAKNR-YTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAF-NNLSTMYLRLG 193 (485)
Q Consensus 116 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~g 193 (485)
-+...+...|++.+|+.-|....+..|+. .++-.-...|...|+...|+.=|.+.++. +||-..- ..-...+.+.|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 34445555566666666666665532322 12223334555566666666666666553 3443221 11223445566
Q ss_pred CcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHH
Q 048394 194 QPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELAL 273 (485)
Q Consensus 194 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 273 (485)
.+++|..-|+..++.. |+..+ ...++.+.-..++-+. ....+..+.-.||...|+...
T Consensus 121 ele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~~-----------------l~~ql~s~~~~GD~~~ai~~i 178 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHWV-----------------LVQQLKSASGSGDCQNAIEMI 178 (504)
T ss_pred cHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHHH-----------------HHHHHHHHhcCCchhhHHHHH
Confidence 6666666666665542 22211 1111111111111111 122344456689999999999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCH
Q 048394 274 KKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDM 353 (485)
Q Consensus 274 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 353 (485)
..+.+..|-+...+..-..+|...|++..|+.=++...+....+..++..+-..+...|+.+.++...++..+.+ ||.
T Consensus 179 ~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdH 256 (504)
T KOG0624|consen 179 THLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDH 256 (504)
T ss_pred HHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cch
Confidence 999999999999999999999999999999998888887777788888888888999999999999999988864 343
Q ss_pred H----hHHHH---HH------HHHhcCcHHHHHHHHHHHHhcccccCCchhH---HHHHHHHHHhcccHHHHHHHHHHHH
Q 048394 354 R----LADVI---IR------AYLQKDMYEEAALIFNNAKKRANASARFFKS---RESFMIYYLRSRQLDLALNEMEAAL 417 (485)
Q Consensus 354 ~----~~~~l---~~------~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~ 417 (485)
. .|..| .. .....++|.++....+...+... .-.... +..+-.++...|++.+|++...+.+
T Consensus 257 K~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep--~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL 334 (504)
T KOG0624|consen 257 KLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEP--EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL 334 (504)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC--cccceeeeeeheeeecccccCCHHHHHHHHHHHH
Confidence 2 22221 11 23456777888888887777632 212233 3444555677899999999999999
Q ss_pred HHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHH
Q 048394 418 SEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKT 472 (485)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 472 (485)
+. .+.|..++.--..+|.-...++.|+.-|+.+.+.++.|..+-..+-.+
T Consensus 335 ~~-----d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~A 384 (504)
T KOG0624|consen 335 DI-----DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERA 384 (504)
T ss_pred hc-----CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 86 334588988888999999999999999999999999888776665444
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.20 E-value=8.7e-10 Score=96.54 Aligned_cols=256 Identities=15% Similarity=0.079 Sum_probs=158.3
Q ss_pred HHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccH
Q 048394 187 TMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELF 266 (485)
Q Consensus 187 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 266 (485)
+-+.-.|++..++.-.+ .....-..+......+.+++...|+++. ++.++.. ..+|.......+...+...++-
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~---vl~ei~~--~~~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDS---VLSEIKK--SSSPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHH---HHHHS-T--TSSCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhH---HHHHhcc--CCChhHHHHHHHHHHHhCccch
Confidence 44556788888876555 3322222234445566778888888764 3455544 3356665555555444333444
Q ss_pred HHHHHHHHHHHhcC-C-CChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 048394 267 EKAELALKKLEEMK-P-RDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEW 344 (485)
Q Consensus 267 ~~A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 344 (485)
+.+..-++...... . .+..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.|
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55554444433211 1 23333334445566778888888877542 35666677888888899999999999888
Q ss_pred HHccCCCCHHhHHHHHHHHH----hcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Q 048394 345 ESRCSSYDMRLADVIIRAYL----QKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEA 420 (485)
Q Consensus 345 ~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 420 (485)
.+.. .|.. ...+..++. ..+.+.+|..+|+++.+. . .++..+.+.+..++...|++++|.+++++....
T Consensus 158 ~~~~--eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~- 230 (290)
T PF04733_consen 158 QQID--EDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-F--GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK- 230 (290)
T ss_dssp HCCS--CCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred HhcC--CcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-c--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-
Confidence 7653 2433 223444333 334688899999987665 3 567777888888888899999999988888765
Q ss_pred hhcCCCccHHHHHHHHHHHhhcCCh-hhHHHHHHHHhhcCCCCHH
Q 048394 421 KQFHWRPMQVTVDTFFRFFEEEKDV-DGAEEFCKVLKSLNCLDFS 464 (485)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~ 464 (485)
.+-++.++..++-+....|+. +.+.+.+.++....|..+.
T Consensus 231 ----~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 231 ----DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp -----CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred ----ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 345677777787777777777 6677888888887776554
No 95
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.17 E-value=1.4e-06 Score=91.39 Aligned_cols=340 Identities=10% Similarity=-0.036 Sum_probs=219.4
Q ss_pred HHHhhCCHHHHHHHHHhhcc--cCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCC------CCCh--hhHHHHHHHH
Q 048394 120 LTAKTNGIAAAEKYFNGLSE--YAKNRYTYGALLNCYCKELMTERALALFEKMDELKF------LGNT--VAFNNLSTMY 189 (485)
Q Consensus 120 ~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~------~p~~--~~~~~l~~~~ 189 (485)
.....|+++.+..+++.+.. ...+..........+...|++++|..++......-- .+.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456788888888877643 112222333445555678999999999988754311 1111 1122233456
Q ss_pred HhCCCcccHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCC--CC--cHHHHHHHHHHHH
Q 048394 190 LRLGQPEKVRPLVNQMKQRNISLD----NLTYIVWMQSYSHLNDIDGVERVFYEMCNECED--KC--RWTTYSNLASIYV 261 (485)
Q Consensus 190 ~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~--~~~~~~~l~~~~~ 261 (485)
...|++++|...+++....-...+ ....+.+...+...|++++|...+++....... .+ ...++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 689999999999999876311111 123455566778899999999999887652111 11 1234556777888
Q ss_pred hcccHHHHHHHHHHHHhc----CCC----ChHHHHHHHHHHHhcCChhhHHHHHHHhhhc----CCC-ChhhHHHHHHHH
Q 048394 262 KAELFEKAELALKKLEEM----KPR----DRKAYHFLISLYCNTSNLDAVNRVWGILKST----FPP-TNTSYLVLLQAL 328 (485)
Q Consensus 262 ~~~~~~~A~~~~~~~~~~----~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~l~~~~ 328 (485)
..|+++.|...+++.... ..+ ....+..+...+...|++++|...+.+.... +.. ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999998887761 111 1234556667778889999999998877553 222 234455567778
Q ss_pred HhcCChhHHHHHHHHHHHccCCCC-HHhH-----HHHHHHHHhcCcHHHHHHHHHHHHhcccccCCch---hHHHHHHHH
Q 048394 329 AKLNAIDILKQCFEEWESRCSSYD-MRLA-----DVIIRAYLQKDMYEEAALIFNNAKKRANASARFF---KSRESFMIY 399 (485)
Q Consensus 329 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~---~~~~~l~~~ 399 (485)
...|+.+.|.+.+........... ...+ ...+..+...|+.+.|...+........ .... ..+..+..+
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~--~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEF--ANNHFLQGQWRNIARA 700 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCC--ccchhHHHHHHHHHHH
Confidence 889999999999988755311111 1111 1122444568899999999877554221 1111 113456667
Q ss_pred HHhcccHHHHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCC
Q 048394 400 YLRSRQLDLALNEMEAALSEAKQFHWRPM-QVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCL 461 (485)
Q Consensus 400 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 461 (485)
+...|++++|...+++........+...+ ..+...+..++.+.|+.++|...+.++.+...+
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 88899999999999999876533333332 235566668889999999999999999987644
No 96
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=9.7e-09 Score=93.33 Aligned_cols=222 Identities=14% Similarity=0.100 Sum_probs=132.8
Q ss_pred HHhhCCHHHHHHHHHhhcc-cCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHH
Q 048394 121 TAKTNGIAAAEKYFNGLSE-YAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVR 199 (485)
Q Consensus 121 ~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 199 (485)
+.+.|++.+|.-.|+...+ .+-+...|..|.......++-..|+..+++..+.+.. |....-.|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHH
Confidence 3456667777666666655 4445566777766666667777777777777665544 5555666666666666666666
Q ss_pred HHHHHHHHcCCC--------ccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHH
Q 048394 200 PLVNQMKQRNIS--------LDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAEL 271 (485)
Q Consensus 200 ~~~~~~~~~~~~--------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 271 (485)
..++..+....+ ++..+-.. ..+.....+....++|-++....+..+|+.++..|.-.|--.|++++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 666665443210 00000000 11112222334444554444434444666666667777777777777777
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 048394 272 ALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWE 345 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 345 (485)
.|+.+....|.|...||.|...++...+.++|+..|.+..+..|.-..+...|.-+|...|.+++|.+.|-..+
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 77777776666777777777777777777777777777776666655555556666677777777766665543
No 97
>PLN02789 farnesyltranstransferase
Probab=99.11 E-value=2.6e-07 Score=82.17 Aligned_cols=230 Identities=8% Similarity=-0.063 Sum_probs=105.0
Q ss_pred CCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCh--hhHH
Q 048394 228 NDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAE-LFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNL--DAVN 304 (485)
Q Consensus 228 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~ 304 (485)
++.++|+.+...+++ ..+-+..+|+....++...| ++++++..++++.+..|.+..+|+.....+.+.|+. +++.
T Consensus 51 e~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 51 ERSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHH
Confidence 344444444444444 33333334433333343444 344555555555544444444444443333333332 3444
Q ss_pred HHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhc---Cc----HHHHHHHHH
Q 048394 305 RVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQK---DM----YEEAALIFN 377 (485)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~----~~~A~~~~~ 377 (485)
.+++++.+..+.+..+|.....++...|+++++++.++++.+.++. |...|+....++.+. |. .+++..+..
T Consensus 129 ~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 129 EFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 4454555544445555555555555555555555555555554443 344444333333222 11 123444444
Q ss_pred HHHhcccccCCchhHHHHHHHHHHhc----ccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcC----------
Q 048394 378 NAKKRANASARFFKSRESFMIYYLRS----RQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEK---------- 443 (485)
Q Consensus 378 ~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------- 443 (485)
+++... +-|...|+.+...+... +...+|.+++.+..+. .+.+...+..|+..|....
T Consensus 208 ~aI~~~---P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~-----~~~s~~al~~l~d~~~~~~~~~~~~~~~~ 279 (320)
T PLN02789 208 DAILAN---PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK-----DSNHVFALSDLLDLLCEGLQPTAEFRDTV 279 (320)
T ss_pred HHHHhC---CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc-----cCCcHHHHHHHHHHHHhhhccchhhhhhh
Confidence 444442 33344454444444431 2334455555554443 2234444555555554321
Q ss_pred --------ChhhHHHHHHHHhhcCCCCHHHHHH
Q 048394 444 --------DVDGAEEFCKVLKSLNCLDFSAYSL 468 (485)
Q Consensus 444 --------~~~~A~~~~~~~~~~~~~~~~~~~~ 468 (485)
..+.|.++++.+.+.+|.-..-|..
T Consensus 280 ~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~~ 312 (320)
T PLN02789 280 DTLAEELSDSTLAQAVCSELEVADPMRRNYWAW 312 (320)
T ss_pred hccccccccHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 3466778888776555554444443
No 98
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.11 E-value=1.9e-07 Score=87.44 Aligned_cols=106 Identities=13% Similarity=0.152 Sum_probs=45.4
Q ss_pred HHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHH
Q 048394 260 YVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQ 339 (485)
Q Consensus 260 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 339 (485)
......|.+|+.+++.+..... -...|..+.+.|...|+++.|.++|.+. ..++-.|..|.+.|++++|.+
T Consensus 742 ai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e~--------~~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTEA--------DLFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHhc--------chhHHHHHHHhccccHHHHHH
Confidence 3344445555555544433111 1223444445555555555555554432 222334445555555555544
Q ss_pred HHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHH
Q 048394 340 CFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIF 376 (485)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 376 (485)
+-.+.. |+......|-+-..-+-+.|++.+|.+++
T Consensus 813 la~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 813 LAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 433322 22223333333333344445555554444
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.11 E-value=5.9e-07 Score=94.13 Aligned_cols=326 Identities=13% Similarity=-0.003 Sum_probs=209.2
Q ss_pred HHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcC--C----Ccc--HHHHHHHHHHH
Q 048394 153 CYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRN--I----SLD--NLTYIVWMQSY 224 (485)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~----~p~--~~~~~~l~~~~ 224 (485)
.....|+++.+..+++.+.......+..........+...|+++++...+......- . .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 345567888777777765322111122233444555677899999999998876431 0 111 11222233456
Q ss_pred HhcCCHhHHHHHHHHHHhccCCCCc----HHHHHHHHHHHHhcccHHHHHHHHHHHHhc----CCCC--hHHHHHHHHHH
Q 048394 225 SHLNDIDGVERVFYEMCNECEDKCR----WTTYSNLASIYVKAELFEKAELALKKLEEM----KPRD--RKAYHFLISLY 294 (485)
Q Consensus 225 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~--~~~~~~l~~~~ 294 (485)
...|++++|...++..... ....+ ....+.+...+...|++++|...+.+.... ..+. ..++..+...+
T Consensus 463 ~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 463 INDGDPEEAERLAELALAE-LPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HhCCCHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 6899999999999988761 11111 134456677788899999999999888762 1111 23456677788
Q ss_pred HhcCChhhHHHHHHHhhhc----CCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcc--CCC--CHHhHHHHHHH
Q 048394 295 CNTSNLDAVNRVWGILKST----FPP----TNTSYLVLLQALAKLNAIDILKQCFEEWESRC--SSY--DMRLADVIIRA 362 (485)
Q Consensus 295 ~~~~~~~~a~~~~~~~~~~----~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~ 362 (485)
...|+++.|...+++.... +.. ....+..+...+...|++++|...+.+..... ..+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8999999999988876542 211 22334456667778899999999998875531 111 23445556677
Q ss_pred HHhcCcHHHHHHHHHHHHhcccccCCchhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCcc---HHHHHH
Q 048394 363 YLQKDMYEEAALIFNNAKKRANASARFFKSR-----ESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPM---QVTVDT 434 (485)
Q Consensus 363 ~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~~ 434 (485)
+...|++++|...+++....... ......+ ...+..+...|+.+.|..++....... .... ...+..
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~----~~~~~~~~~~~~~ 696 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGN-GRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE----FANNHFLQGQWRN 696 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhc-ccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC----CccchhHHHHHHH
Confidence 88999999999999888653110 1111111 111234456889999999987754421 1111 112345
Q ss_pred HHHHHhhcCChhhHHHHHHHHhhcCC------CCHHHHHHHHHHHHHhCCCcchhc
Q 048394 435 FFRFFEEEKDVDGAEEFCKVLKSLNC------LDFSAYSLLIKTYIAAGKLASDMR 484 (485)
Q Consensus 435 l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~ 484 (485)
+..++...|++++|...++++..... ....+...++.++.+.|+.++|..
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~ 752 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQR 752 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66788899999999999999877431 134578889999999999988864
No 100
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=1.7e-06 Score=72.46 Aligned_cols=295 Identities=12% Similarity=0.039 Sum_probs=134.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHH-HH
Q 048394 74 VRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGAL-LN 152 (485)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l-i~ 152 (485)
.....+..++..+.+..++++|++++..-.++. +.+....+.+..+|....++..|-..++++....|...-|... ..
T Consensus 8 i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 8 IPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQ 86 (459)
T ss_pred CCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 333344455555555555555555555444443 1244444444555555555555555555555533443333221 23
Q ss_pred HHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHH--HHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 048394 153 CYCKELMTERALALFEKMDELKFLGNTVAFNNLS--TMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDI 230 (485)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 230 (485)
.+.+.+.+.+|+.+...|... |+...-..-+ ......+++..+..+.++....| +..+.+...-...+.|++
T Consensus 87 SLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 334455555555555554432 1111100111 11123445555555554443221 222222222233455555
Q ss_pred hHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHh----cCC----------CC-------------
Q 048394 231 DGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEE----MKP----------RD------------- 283 (485)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~----------~~------------- 283 (485)
+.|.+-|+...+.+|..|- ..|+ +.-+..+.|+++.|++...++.+ ..| +|
T Consensus 161 EaAvqkFqaAlqvsGyqpl-lAYn-iALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S 238 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPL-LAYN-LALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS 238 (459)
T ss_pred HHHHHHHHHHHhhcCCCch-hHHH-HHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH
Confidence 5555555555553333332 2232 22223344555555555544443 000 00
Q ss_pred --hHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHH
Q 048394 284 --RKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP--TNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVI 359 (485)
Q Consensus 284 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 359 (485)
..++|.-...+.+.|+++.|.+.+..|...... |+.|...+.-.- ..+++-+..+-++-+.+..+- ...||..+
T Consensus 239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANl 316 (459)
T KOG4340|consen 239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANL 316 (459)
T ss_pred HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHH
Confidence 233555555666666766666666666544443 555554433221 123344444444444444443 34555556
Q ss_pred HHHHHhcCcHHHHHHHHHHH
Q 048394 360 IRAYLQKDMYEEAALIFNNA 379 (485)
Q Consensus 360 ~~~~~~~~~~~~A~~~~~~~ 379 (485)
+-.||++.-++-|-.++.+-
T Consensus 317 LllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhC
Confidence 66666666666666665443
No 101
>PLN02789 farnesyltranstransferase
Probab=99.09 E-value=1.2e-07 Score=84.41 Aligned_cols=212 Identities=11% Similarity=0.002 Sum_probs=171.0
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC-ChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCCh
Q 048394 256 LASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTS-NLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAI 334 (485)
Q Consensus 256 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 334 (485)
+-..+...+..++|+.+..++.+..|.+..+|+.-..++...| ++++++..++++....+.+..+|+.....+.+.|+.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCch
Confidence 3334445678889999999999999989999998888888888 679999999999999999888888776666677763
Q ss_pred --hHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhc---cc----
Q 048394 335 --DILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRS---RQ---- 405 (485)
Q Consensus 335 --~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~---- 405 (485)
+++..+++.+.+..++ |..+|+...-++...|+++++++.++++++.+ .-|...|+.....+.+. |.
T Consensus 123 ~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d---~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 123 AANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED---VRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred hhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC---CCchhHHHHHHHHHHhcccccccccc
Confidence 6788999999988776 88999998889999999999999999999987 44556776665555443 22
Q ss_pred HHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhc----CChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 048394 406 LDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEE----KDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAA 476 (485)
Q Consensus 406 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 476 (485)
.++++.+..+++.. .+-+...|+.+...+... +...+|.+.+.++.+..|.++.+...|+..|+..
T Consensus 199 ~e~el~y~~~aI~~-----~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 199 RDSELKYTIDAILA-----NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHHHHHHh-----CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 35678888888887 456778888888888773 3456788999998888899999999999999874
No 102
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.02 E-value=3e-07 Score=91.99 Aligned_cols=201 Identities=15% Similarity=0.168 Sum_probs=122.5
Q ss_pred hhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCc-----cHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHH
Q 048394 179 TVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISL-----DNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTY 253 (485)
Q Consensus 179 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 253 (485)
...|-..|......++.++|.+++++.+.. +.+ -...|.++++.-...|.-+...++|+++.+ .-....+|
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq---ycd~~~V~ 1533 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ---YCDAYTVH 1533 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH---hcchHHHH
Confidence 344555565666666666666666665543 211 123455555555555666666666666665 22234455
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC--ChhhHHHHHHHHHhc
Q 048394 254 SNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP--TNTSYLVLLQALAKL 331 (485)
Q Consensus 254 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 331 (485)
..|...|.+.+.+++|-++++.|.+........|...+..+.+.++-+.|..++.++.+.-|. ........+..-.+.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 566666666667777777777666633345666666666666666666666776666666555 334444455555566
Q ss_pred CChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q 048394 332 NAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRAN 384 (485)
Q Consensus 332 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 384 (485)
|+.+.+..+|+......++ -...|+..++.-.+.|+.+.++.+|++....++
T Consensus 1614 GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred CCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 7777777777766665444 556677777777777777777777777776665
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.99 E-value=4.8e-08 Score=76.51 Aligned_cols=127 Identities=13% Similarity=-0.015 Sum_probs=107.5
Q ss_pred HHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHH
Q 048394 338 KQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAAL 417 (485)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 417 (485)
+.++++..+. ++..+..+...+...|++++|...|+...... +.+...|..+...+.+.|++++|+..|+++.
T Consensus 13 ~~~~~~al~~----~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLSV----DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ---PWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHHc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3456666554 33345567888899999999999999998875 5577888899999999999999999999999
Q ss_pred HHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 048394 418 SEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAA 476 (485)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 476 (485)
.. .+.+...+..+..++...|++++|...|+.+.+..|.++..|...+.+....
T Consensus 86 ~l-----~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 86 ML-----DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred hc-----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 87 5567889999999999999999999999999999999999998888877654
No 104
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.99 E-value=2.2e-07 Score=91.94 Aligned_cols=168 Identities=9% Similarity=0.091 Sum_probs=105.7
Q ss_pred ChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHH
Q 048394 178 NTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNL-TYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNL 256 (485)
Q Consensus 178 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 256 (485)
+...|..|+..+...+++++|.++.+...+. .|+.. .|..+...+.+.++...+..+ .+..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~-------------- 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLID-------------- 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhh--------------
Confidence 3456777888888888888888888866664 34433 333333355666665555544 2222
Q ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhH
Q 048394 257 ASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDI 336 (485)
Q Consensus 257 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 336 (485)
......++.....+...+.. .+.+..++..++.+|-+.|+.+++..+|+++.+..+.+..+.+.+...|... ++++
T Consensus 92 --~~~~~~~~~~ve~~~~~i~~-~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 --SFSQNLKWAIVEHICDKILL-YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred --hcccccchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHH
Confidence 22222233222222223322 2234457777888888888888888888888888777888888888888887 8888
Q ss_pred HHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 048394 337 LKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKR 382 (485)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 382 (485)
|.+++.+.... |...+++.++..+|.++...
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 88877776554 44455666666666666655
No 105
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.98 E-value=5.5e-07 Score=87.19 Aligned_cols=377 Identities=13% Similarity=-0.016 Sum_probs=223.1
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcc-cCCCHhHHHHHHHHHHhcCcHHHHHHHHH
Q 048394 90 GRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE-YAKNRYTYGALLNCYCKELMTERALALFE 168 (485)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 168 (485)
.+...|+..|-+..+... -=...|..|...|+...+...|.+.|+...+ ..-+...+......|++..+++.|..+.-
T Consensus 472 K~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 346677777766655542 2234677788888877788888888888877 44456677888888888888888887733
Q ss_pred HHHhCCCC-CChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCC
Q 048394 169 KMDELKFL-GNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDK 247 (485)
Q Consensus 169 ~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 247 (485)
..-+.... .-...|..+.-.|.+.++...++.-|+...... +.|...|..+..+|...|.+..|.++|..+.. -.|
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRP 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCc
Confidence 33222110 111223334445667777777777777776653 34566777777788888888888888877765 333
Q ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-------CChHHHHHHHHHHHhcCChhhHHHHHHHhh-------hc
Q 048394 248 CRWTTYSNLASIYVKAELFEKAELALKKLEEMKP-------RDRKAYHFLISLYCNTSNLDAVNRVWGILK-------ST 313 (485)
Q Consensus 248 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~ 313 (485)
.+...--...-..+..|.+.+|...+........ .-..++..+...+...|-...+.++++.-. .+
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3333333344445566777777777666554111 112333333333333333333333333222 11
Q ss_pred C-CCChhhHHHHHHHHH-----------------------hcCCh---h---HHHHHHHHHHHccCCCCHHhHHHHHHHH
Q 048394 314 F-PPTNTSYLVLLQALA-----------------------KLNAI---D---ILKQCFEEWESRCSSYDMRLADVIIRAY 363 (485)
Q Consensus 314 ~-~~~~~~~~~l~~~~~-----------------------~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 363 (485)
. ..+...|..+..+|. ..+.. | -+.+.+-.-.+ ...+..+|..++..|
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINY 785 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHH
Confidence 1 112222222222221 11111 1 01111111111 111233444444444
Q ss_pred Hh--------cCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHH
Q 048394 364 LQ--------KDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTF 435 (485)
Q Consensus 364 ~~--------~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 435 (485)
.+ ..+...|...+.+.++.. ..+..+|+.|.- ....|++.-|.-.|-+.... .+....+|..+
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~---ann~~~WnaLGV-lsg~gnva~aQHCfIks~~s-----ep~~~~~W~Nl 856 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSLC---ANNEGLWNALGV-LSGIGNVACAQHCFIKSRFS-----EPTCHCQWLNL 856 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHh---hccHHHHHHHHH-hhccchhhhhhhhhhhhhhc-----cccchhheecc
Confidence 33 123346777787777653 455566766644 36668888888888877766 56678899999
Q ss_pred HHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcc
Q 048394 436 FRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLAS 481 (485)
Q Consensus 436 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 481 (485)
.-.+.+..|++.|...|.+...+.|.|...|...+.+....|+.-+
T Consensus 857 gvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~ 902 (1238)
T KOG1127|consen 857 GVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIE 902 (1238)
T ss_pred ceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHH
Confidence 9999999999999999999999999999998877777766665443
No 106
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.98 E-value=1.9e-07 Score=80.68 Aligned_cols=192 Identities=13% Similarity=0.050 Sum_probs=127.4
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChh---
Q 048394 246 DKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDR---KAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNT--- 319 (485)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 319 (485)
.......+..++..+...|+++.|...|+++....|.++ .++..+..++...|++++|...++++.+..|.+..
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 455666777788888888999999999988888666543 46677888888889999999999988887776333
Q ss_pred hHHHHHHHHHhc--------CChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchh
Q 048394 320 SYLVLLQALAKL--------NAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFK 391 (485)
Q Consensus 320 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~ 391 (485)
++..+..++... |+.+.|.+.++.+.+..+. +...+..+..... ... ... .
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~-------~~~---------~ 167 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN-------RLA---------G 167 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH-------HHH---------H
Confidence 455555555544 5677777777777666433 2222222211100 000 000 0
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCC
Q 048394 392 SRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNC 460 (485)
Q Consensus 392 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 460 (485)
....+...+.+.|++++|+..+++.++... ..+.....+..+..++.+.|++++|..+++.+....|
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYP--DTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCC--CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 112345567888999999999988887631 0112346778888888889999999888888776654
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.97 E-value=5.4e-07 Score=90.21 Aligned_cols=242 Identities=11% Similarity=0.053 Sum_probs=182.8
Q ss_pred HHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC-----ChhhHHHHHHHHHhCCCcccHHHHHH
Q 048394 129 AAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLG-----NTVAFNNLSTMYLRLGQPEKVRPLVN 203 (485)
Q Consensus 129 ~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~ 203 (485)
.|..+-..+...+.+...|-..|....+.++.++|.+++++.+.. +.+ -...|.++++.-...|.-+...++|+
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 333333333334445678888888889999999999999988653 211 12367777777777787788889999
Q ss_pred HHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-
Q 048394 204 QMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPR- 282 (485)
Q Consensus 204 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~- 282 (485)
++.+.. . .-..|..|...|.+.+++++|.++++.|.+ .+.....+|...+..+.+.++-+.|..++.++.+..|.
T Consensus 1522 RAcqyc-d-~~~V~~~L~~iy~k~ek~~~A~ell~~m~K--KF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1522 RACQYC-D-AYTVHLKLLGIYEKSEKNDEADELLRLMLK--KFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred HHHHhc-c-hHHHHHHHHHHHHHhhcchhHHHHHHHHHH--HhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh
Confidence 988762 1 234677888999999999999999999998 44467778888999999999999999999998885553
Q ss_pred -ChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCC--HHhHHHH
Q 048394 283 -DRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYD--MRLADVI 359 (485)
Q Consensus 283 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 359 (485)
........+..-.+.|+.+.+..+|+......|.-...|+.+++.-.+.|+.+.+..+|+++...++.|. -..|..-
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 4556667777778899999999999999998888888899999999999999999999999998877654 2344444
Q ss_pred HHHHHhcCcHHHHHHH
Q 048394 360 IRAYLQKDMYEEAALI 375 (485)
Q Consensus 360 ~~~~~~~~~~~~A~~~ 375 (485)
+..-.+.|+-+.++.+
T Consensus 1678 LeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1678 LEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HHHHHhcCchhhHHHH
Confidence 4444444554444333
No 108
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.97 E-value=1.9e-07 Score=80.76 Aligned_cols=188 Identities=13% Similarity=0.063 Sum_probs=138.2
Q ss_pred ccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcH---HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChH---
Q 048394 212 LDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRW---TTYSNLASIYVKAELFEKAELALKKLEEMKPRDRK--- 285 (485)
Q Consensus 212 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--- 285 (485)
.....+..+...+...|+++.|...|+++.. ..+.+. .++..+..++...|++++|...++++.+..|.+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALES--RYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3566777788889999999999999999987 333332 46678899999999999999999999996665544
Q ss_pred HHHHHHHHHHhc--------CChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHH
Q 048394 286 AYHFLISLYCNT--------SNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLAD 357 (485)
Q Consensus 286 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 357 (485)
++..+..++... |+++.|.+.++.+....|.+...+..+..... ... .. .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~------~~--------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRN------RL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHH------HH--------HHHHH
Confidence 566667777665 78899999999999888875544433322111 000 00 01112
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 048394 358 VIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSE 419 (485)
Q Consensus 358 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 419 (485)
.+...|.+.|++++|...+++..+.....+.....+..+..++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46677889999999999999988763100223467788899999999999999998888765
No 109
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=3.6e-07 Score=75.24 Aligned_cols=255 Identities=11% Similarity=0.056 Sum_probs=144.3
Q ss_pred HHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccH
Q 048394 187 TMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELF 266 (485)
Q Consensus 187 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 266 (485)
+-+.-.|++..++..-....... -+...-..+.++|...|.+... ..++.. +..|.......+......-++.
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~---~~eI~~--~~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIV---ISEIKE--GKATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccc---cccccc--ccCChHHHHHHHHHHhhCcchh
Confidence 34445577766665544443321 2333333355666666665433 233333 2234444433333333333443
Q ss_pred HHHHH-HHHHHHh-cCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 048394 267 EKAEL-ALKKLEE-MKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEW 344 (485)
Q Consensus 267 ~~A~~-~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 344 (485)
+.-.. +.+.+.. ....+......-+..|++.|++++|++..... .+......=+..+.+..+++.|.+.++.|
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332 2233222 22223333344455677788888887776651 23334444445556677778888888888
Q ss_pred HHccCCCCHHhHHHHHHHHHh----cCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Q 048394 345 ESRCSSYDMRLADVIIRAYLQ----KDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEA 420 (485)
Q Consensus 345 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 420 (485)
.+.. +..+.+.|..++.+ .+.+.+|.-+|++|.++- .|+..+.+....++...|++++|..++++.+..
T Consensus 164 q~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~---~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k- 236 (299)
T KOG3081|consen 164 QQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT---PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK- 236 (299)
T ss_pred Hccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc---CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 7642 44555555555543 456777888888887643 677777777777777888888888888888877
Q ss_pred hhcCCCccHHHHHHHHHHHhhcCCh-hhHHHHHHHHhhcCCCCHH
Q 048394 421 KQFHWRPMQVTVDTFFRFFEEEKDV-DGAEEFCKVLKSLNCLDFS 464 (485)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~ 464 (485)
...++.+...++-+-...|.. +...+.+.++....|..+.
T Consensus 237 ----d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 237 ----DAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred ----cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 445667766666544444543 4455667777776665443
No 110
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.97 E-value=2.8e-05 Score=70.87 Aligned_cols=186 Identities=11% Similarity=0.074 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHh-cCCCChHHHHHHHHHHHhcC---ChhhHHHHHHHhhhcCCC-ChhhHHHHHHHHHhcCChhHHHHH
Q 048394 266 FEKAELALKKLEE-MKPRDRKAYHFLISLYCNTS---NLDAVNRVWGILKSTFPP-TNTSYLVLLQALAKLNAIDILKQC 340 (485)
Q Consensus 266 ~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 340 (485)
-+++..+++.... ....+..+|..+.+.--..- ..+....+++++...... ...+|..+++...+..-+..|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3445555555544 22223344444333222122 356666777777665555 677888899998899999999999
Q ss_pred HHHHHHccCCC-CHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHH-HHHHHHHHhcccHHHHHHHHHHHHH
Q 048394 341 FEEWESRCSSY-DMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSR-ESFMIYYLRSRQLDLALNEMEAALS 418 (485)
Q Consensus 341 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~ 418 (485)
|.++.+.+..+ ++.++++++.-||. ++.+-|.++|+--.+. -+|...| ...+..+...++-..|..+|++.+.
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk----f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~ 463 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK----FGDSPEYVLKYLDFLSHLNDDNNARALFERVLT 463 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh----cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 99998887666 78888888887775 7888999999876655 3443333 4566777888998999999999988
Q ss_pred HhhhcCCCcc--HHHHHHHHHHHhhcCChhhHHHHHHHHhhcCC
Q 048394 419 EAKQFHWRPM--QVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNC 460 (485)
Q Consensus 419 ~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 460 (485)
.+ ..|+ ..+|..++.--..-||...+.++-++.....|
T Consensus 464 s~----l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 464 SV----LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred cc----CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 75 4443 57899999988899999999888888776555
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.96 E-value=2.3e-07 Score=76.85 Aligned_cols=156 Identities=10% Similarity=0.093 Sum_probs=117.4
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCh
Q 048394 221 MQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNL 300 (485)
Q Consensus 221 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 300 (485)
+..|...|+++.+....+.+.. +.. .+...++.+++...++......|.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----ccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
Confidence 3467788888776554433222 100 111256667788888888888888889999999999999999
Q ss_pred hhHHHHHHHhhhcCCCChhhHHHHHHHH-HhcCC--hhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHH
Q 048394 301 DAVNRVWGILKSTFPPTNTSYLVLLQAL-AKLNA--IDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFN 377 (485)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 377 (485)
++|...+++.....+.+...+..+..++ ...|+ .++|.+++++..+..+. +...+..+...+.+.|++++|...|+
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999988888888888888888864 56676 48899999998888766 77788888888888999999999999
Q ss_pred HHHhcccccCCchhHH
Q 048394 378 NAKKRANASARFFKSR 393 (485)
Q Consensus 378 ~~~~~~~~~~p~~~~~ 393 (485)
++.+.. +|+..-+
T Consensus 169 ~aL~l~---~~~~~r~ 181 (198)
T PRK10370 169 KVLDLN---SPRVNRT 181 (198)
T ss_pred HHHhhC---CCCccHH
Confidence 888775 4554443
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.96 E-value=1.1e-07 Score=78.30 Aligned_cols=158 Identities=13% Similarity=0.043 Sum_probs=96.9
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Q 048394 218 IVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNT 297 (485)
Q Consensus 218 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 297 (485)
..+-..+...|+-+....+...... ..+.+......++....+.|++..|...+.+.....|+|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 3444555556666666666555444 44455555555666666666666666666666666666666666666666666
Q ss_pred CChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHH
Q 048394 298 SNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFN 377 (485)
Q Consensus 298 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 377 (485)
|+.+.|..-|.+..+..+.++..++.+.-.+.-.|+.+.|..++......+.. |..+-..+..+....|++++|..+..
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 66666666666666666666666666666666666666666666666555443 44445556666666666666666654
Q ss_pred H
Q 048394 378 N 378 (485)
Q Consensus 378 ~ 378 (485)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 3
No 113
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=1.2e-05 Score=78.27 Aligned_cols=330 Identities=11% Similarity=0.066 Sum_probs=173.2
Q ss_pred HHHHHHhCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhhCCHHHHHHHHHhhcc
Q 048394 64 LNAYIMEGKT--VRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMH--FSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE 139 (485)
Q Consensus 64 ~~~~~~~g~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 139 (485)
++..+..+.+ -|+......++++...+-+.+-+++++.+.-.+-. -+...-|.++-... .-+..+..++.+++..
T Consensus 970 iDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdn 1048 (1666)
T KOG0985|consen 970 IDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDN 1048 (1666)
T ss_pred HHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhcc
Confidence 3444444443 46788888899999999999999999998543211 12222333333333 3455666677776655
Q ss_pred -cCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCC----------------------CCCChhhHHHHHHHHHhCCCcc
Q 048394 140 -YAKNRYTYGALLNCYCKELMTERALALFEKMDELK----------------------FLGNTVAFNNLSTMYLRLGQPE 196 (485)
Q Consensus 140 -~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~----------------------~~p~~~~~~~l~~~~~~~g~~~ 196 (485)
..|+. ...+...+-+++|..+|++.-..+ +. .+..|..+..+-.+.|...
T Consensus 1049 yDa~~i------a~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n-~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1049 YDAPDI------AEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCN-EPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred CCchhH------HHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhC-ChHHHHHHHHHHHhcCchH
Confidence 22322 223334455566666655432110 11 2234555555555555555
Q ss_pred cHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 048394 197 KVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKL 276 (485)
Q Consensus 197 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 276 (485)
+|++-|-+. -|+..|..+++...+.|.+++-.+++....+ ..-.|...+ .|+-+|++.++..+-++.+
T Consensus 1122 dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRk-k~~E~~id~--eLi~AyAkt~rl~elE~fi--- 1189 (1666)
T KOG0985|consen 1122 DAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARK-KVREPYIDS--ELIFAYAKTNRLTELEEFI--- 1189 (1666)
T ss_pred HHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH-hhcCccchH--HHHHHHHHhchHHHHHHHh---
Confidence 555443221 1444555666666666666666666655555 333343333 3566666666555444332
Q ss_pred HhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhH
Q 048394 277 EEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLA 356 (485)
Q Consensus 277 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 356 (485)
..|+......+.+-|...|.++.|.-+|.. ...|..|...+...|++..|...-++. .+..+|
T Consensus 1190 ---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktW 1252 (1666)
T KOG0985|consen 1190 ---AGPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTW 1252 (1666)
T ss_pred ---cCCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHH
Confidence 223555555556666666666666555543 234455555555666655554443322 145566
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q 048394 357 DVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFF 436 (485)
Q Consensus 357 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~ 436 (485)
..+-.+|...+.+.-| +|-..++ .....-...++..|-..|-+++.+.+++..+-. -+...-.|+-|.
T Consensus 1253 K~VcfaCvd~~EFrlA-----QiCGL~i--ivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL-----ERAHMgmfTELa 1320 (1666)
T KOG0985|consen 1253 KEVCFACVDKEEFRLA-----QICGLNI--IVHADELEELIEYYQDRGYFEELISLLEAGLGL-----ERAHMGMFTELA 1320 (1666)
T ss_pred HHHHHHHhchhhhhHH-----HhcCceE--EEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch-----hHHHHHHHHHHH
Confidence 6665555554444322 2333333 333444556666677777777777666665443 122333444444
Q ss_pred HHHhhc
Q 048394 437 RFFEEE 442 (485)
Q Consensus 437 ~~~~~~ 442 (485)
-.|.+.
T Consensus 1321 iLYsky 1326 (1666)
T KOG0985|consen 1321 ILYSKY 1326 (1666)
T ss_pred HHHHhc
Confidence 444443
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.95 E-value=1.9e-07 Score=77.00 Aligned_cols=179 Identities=13% Similarity=0.010 Sum_probs=145.7
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcc
Q 048394 269 AELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRC 348 (485)
Q Consensus 269 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 348 (485)
+...+-......|.+... ..+...+...|+-+....+........+.+......++....+.|++..|...+.+.....
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 333333333355656666 7788888899999999988888777777788888889999999999999999999998876
Q ss_pred CCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCcc
Q 048394 349 SSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPM 428 (485)
Q Consensus 349 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 428 (485)
++ |...|+.+.-+|.+.|+++.|..-|.+..+.. .-+...++.+...+.-.|+.+.|..++......+ .-|
T Consensus 131 p~-d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~---~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-----~ad 201 (257)
T COG5010 131 PT-DWEAWNLLGAALDQLGRFDEARRAYRQALELA---PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-----AAD 201 (257)
T ss_pred CC-ChhhhhHHHHHHHHccChhHHHHHHHHHHHhc---cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-----CCc
Confidence 54 89999999999999999999999999998874 3345667888888899999999999999998863 347
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 048394 429 QVTVDTFFRFFEEEKDVDGAEEFCKVLKS 457 (485)
Q Consensus 429 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 457 (485)
..+-..+..+....|++++|+.+...-..
T Consensus 202 ~~v~~NLAl~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 202 SRVRQNLALVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred hHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence 78888888899999999999988765443
No 115
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.93 E-value=2.2e-06 Score=83.23 Aligned_cols=213 Identities=12% Similarity=0.011 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048394 267 EKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWES 346 (485)
Q Consensus 267 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 346 (485)
..|...+++..+....+..+|+.|.-. ...|++.-+...|-+-....+....+|..+.-.+.+..+++.|...|.....
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 355566666665555566666666544 4556666666666666666666677777777777778888888888888777
Q ss_pred ccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHH--HHh--cccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhh
Q 048394 347 RCSSYDMRLADVIIRAYLQKDMYEEAALIFNN--AKK--RANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQ 422 (485)
Q Consensus 347 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--~~~--~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 422 (485)
..+. |...|-.....-...|+.-++..+|.. ... .|- .|+..-|-....-...+|+.++-+...+.+......
T Consensus 879 LdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gk--a~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 879 LDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGK--AKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred cCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccc--cchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 6554 566665555555566777777777765 222 222 444444444444445566655554444433322100
Q ss_pred c-----CCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcC------CCCHHHHHHHHHHHHHhCCCcchh
Q 048394 423 F-----HWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLN------CLDFSAYSLLIKTYIAAGKLASDM 483 (485)
Q Consensus 423 ~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~ 483 (485)
. +.+.+...|..........+.+..|.....+....- ..+..+-..++..++..|.++.|.
T Consensus 956 l~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~ 1027 (1238)
T KOG1127|consen 956 LSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAK 1027 (1238)
T ss_pred HHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHh
Confidence 0 144556677777777777777887777777655421 123335557778888888888764
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.92 E-value=1e-06 Score=86.44 Aligned_cols=136 Identities=8% Similarity=0.006 Sum_probs=86.5
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHH
Q 048394 246 DKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLL 325 (485)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 325 (485)
.+.+...+..|.....+.|.+++|..+++.+.+..|.+......++..+.+.+++++|....++.....|.+......+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 44456666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 048394 326 QALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKR 382 (485)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 382 (485)
.++.+.|++++|..+|+++...++. +..++..+...+...|+.++|...|++..+.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666666654332 3555666666666666666666666666554
No 117
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=3.2e-06 Score=80.48 Aligned_cols=164 Identities=15% Similarity=0.164 Sum_probs=77.1
Q ss_pred HhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHH
Q 048394 122 AKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPL 201 (485)
Q Consensus 122 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 201 (485)
...|.+++|..+|.+... |..|=..|-..|.+++|.++-+.--.-.+ ..||......+-..++.+.|++.
T Consensus 811 ieLgMlEeA~~lYr~ckR-------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR-------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH-------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHH
Confidence 345555666665555543 22333334445666666555433211111 12444444444444555555555
Q ss_pred HHHHHH----------cC---------CCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh
Q 048394 202 VNQMKQ----------RN---------ISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVK 262 (485)
Q Consensus 202 ~~~~~~----------~~---------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (485)
|++... .. -..|...|.-...-+-..|+.+.|+.+|....+ |-+++...|-
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~C~ 950 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIKCI 950 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeEee
Confidence 543211 00 011222333333333344555555555554443 2234444445
Q ss_pred cccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHh
Q 048394 263 AELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGIL 310 (485)
Q Consensus 263 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 310 (485)
.|+.++|-.+-++ ..|..+...+.+.|-+.|++.+|..+|.+.
T Consensus 951 qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 951 QGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred ccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5555555555443 124455556677777777777777766654
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.92 E-value=5.9e-08 Score=90.75 Aligned_cols=215 Identities=10% Similarity=0.038 Sum_probs=132.6
Q ss_pred CCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHH
Q 048394 245 EDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVL 324 (485)
Q Consensus 245 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 324 (485)
..+|-+..-..+...+...|-...|..+|+++ ..|...+.+|...|+..+|..+..+-.+ .++++..|..+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~L 463 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLL 463 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHh
Confidence 45677777777888888889999999988874 5677788888888988888888887776 55577778777
Q ss_pred HHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcc
Q 048394 325 LQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSR 404 (485)
Q Consensus 325 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 404 (485)
++......-++.|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +-...+|-.+..+..+.+
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n---plq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN---PLQLGTWFGLGCAALQLE 533 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC---ccchhHHHhccHHHHHHh
Confidence 77766555566666666654322 11111122223455666666655544443 223344544444445556
Q ss_pred cHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcchh
Q 048394 405 QLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDM 483 (485)
Q Consensus 405 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 483 (485)
++..|.+.|...... -+.+...|+++-.+|.+.|+-.+|...++++.+.+..+...|.+..-...+-|.+++|+
T Consensus 534 k~q~av~aF~rcvtL-----~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVTL-----EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred hhHHHHHHHHHHhhc-----CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHH
Confidence 666666666665554 22234456666666666666666666666666555555555555555555555555554
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.92 E-value=1.1e-07 Score=89.03 Aligned_cols=214 Identities=12% Similarity=0.053 Sum_probs=161.9
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCC
Q 048394 115 AVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQ 194 (485)
Q Consensus 115 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 194 (485)
..+...+...|-...|..+|+++. .|...|.+|...|+..+|..+..+..++ +||+..|-.+.+......-
T Consensus 402 ~~laell~slGitksAl~I~Erle-------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE-------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH-------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHH
Confidence 445667777888888888888764 5777788888888888888888777763 3677777777776666666
Q ss_pred cccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHH
Q 048394 195 PEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALK 274 (485)
Q Consensus 195 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 274 (485)
+++|.++.+..-.+ .-..+.....+.+++.++.+.|+.-.+ -.+....+|-.+..+..+.+++..|.+.|.
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 67777776654332 112222223447888888888887776 566677788788888888888888888888
Q ss_pred HHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048394 275 KLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWES 346 (485)
Q Consensus 275 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 346 (485)
......|.+...||.+..+|.+.++-.+|...+.+..+.+..+...|...+....+.|.+++|.+.+..+..
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888887755777777777778888888888888887754
No 120
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.91 E-value=1e-06 Score=86.42 Aligned_cols=195 Identities=12% Similarity=0.103 Sum_probs=153.4
Q ss_pred HHHHHHhcCCHhHH-HHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC
Q 048394 220 WMQSYSHLNDIDGV-ERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTS 298 (485)
Q Consensus 220 l~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 298 (485)
+=.+....|..++| .+++.++.+ ++..........+++.-+.......+.+...+..|..+....|
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g 100 (694)
T PRK15179 34 LEAALAEPGESEEAGRELLQQARQ-------------VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAH 100 (694)
T ss_pred HHHHhcCcccchhHHHHHHHHHHH-------------HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcC
Confidence 33445566666655 455555555 3333333333333333333333355667999999999999999
Q ss_pred ChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHH
Q 048394 299 NLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNN 378 (485)
Q Consensus 299 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 378 (485)
.+++|..+|+...+..|.+......++..+.+.+++++|...++......+. +......+..++.+.|++++|..+|++
T Consensus 101 ~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~~A~~~y~~ 179 (694)
T PRK15179 101 RSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQSEQADACFER 179 (694)
T ss_pred CcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998776 788888899999999999999999999
Q ss_pred HHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q 048394 379 AKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFF 436 (485)
Q Consensus 379 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~ 436 (485)
+...+ .-+..++..+..++...|+.++|...|++..+. ..|....|+.++
T Consensus 180 ~~~~~---p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-----~~~~~~~~~~~~ 229 (694)
T PRK15179 180 LSRQH---PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-----IGDGARKLTRRL 229 (694)
T ss_pred HHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----hCcchHHHHHHH
Confidence 99853 344778888999999999999999999999988 556666666554
No 121
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.90 E-value=4.5e-05 Score=69.55 Aligned_cols=403 Identities=10% Similarity=0.046 Sum_probs=238.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHH
Q 048394 71 GKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGAL 150 (485)
Q Consensus 71 g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l 150 (485)
..|-|..++..+++-+... .++++.++++++...- +.+...|...|..-....+++..+++|.+.....-+...|...
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lY 92 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLY 92 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 4567888888888877655 8899999999987653 4566678888888888899999999999887744567777777
Q ss_pred HHHHHh-cCcHHH----HHHHHHHH-HhCCCCC-ChhhHHHHHHHH---------HhCCCcccHHHHHHHHHHcCCCccH
Q 048394 151 LNCYCK-ELMTER----ALALFEKM-DELKFLG-NTVAFNNLSTMY---------LRLGQPEKVRPLVNQMKQRNISLDN 214 (485)
Q Consensus 151 i~~~~~-~~~~~~----A~~~~~~m-~~~~~~p-~~~~~~~l~~~~---------~~~g~~~~a~~~~~~~~~~~~~p~~ 214 (485)
++---+ .|+... ..+.|+-. .+.|..+ +-..|+..+..+ ..+.+.+.+.++|+++...-+..=.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 754333 233222 23333333 2334322 223455555432 2334556677777777754221112
Q ss_pred HHHHHHHHHH-------------HhcCCHhHHHHHHHHHHhc-cCC-------CCcH--------HHHHHHHHHHHhcc-
Q 048394 215 LTYIVWMQSY-------------SHLNDIDGVERVFYEMCNE-CED-------KCRW--------TTYSNLASIYVKAE- 264 (485)
Q Consensus 215 ~~~~~l~~~~-------------~~~~~~~~a~~~~~~~~~~-~~~-------~~~~--------~~~~~l~~~~~~~~- 264 (485)
..|+-...-- -+...+..|.++++++... .|. +|.. ..|-.+|.--...+
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 2333221110 0122355566666665431 011 1110 01111121110000
Q ss_pred -----c--HHHHHHHHHHHHhcCCCChHHHHHHHH-------HHHhcCC-------hhhHHHHHHHhhhcCCC-ChhhHH
Q 048394 265 -----L--FEKAELALKKLEEMKPRDRKAYHFLIS-------LYCNTSN-------LDAVNRVWGILKSTFPP-TNTSYL 322 (485)
Q Consensus 265 -----~--~~~A~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~-------~~~a~~~~~~~~~~~~~-~~~~~~ 322 (485)
. -....-++++.....+..+..|..-.. .+...|+ .+++..+++.....-.. +...|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 011112223322211222333332222 2223333 34566666666554443 444444
Q ss_pred HHHHHHHhcC---ChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCC-chhHHHHHHH
Q 048394 323 VLLQALAKLN---AIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASAR-FFKSRESFMI 398 (485)
Q Consensus 323 ~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p-~~~~~~~l~~ 398 (485)
.+...--..- ..+....+++++......--..+|-.++..-.+...++.|..+|.++.+.+. .+ ++..++.++.
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r--~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKR--TRHHVFVAAALME 410 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccC--CcchhhHHHHHHH
Confidence 4433322222 2556666777666543222345677788888888999999999999999877 66 6677778887
Q ss_pred HHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcC--CC-CHHHHHHHHHHHHH
Q 048394 399 YYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLN--CL-DFSAYSLLIKTYIA 475 (485)
Q Consensus 399 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~-~~~~~~~l~~~~~~ 475 (485)
.|+ .++..-|.++|+--+.. +..++......+.-+...++-..|..+|++++... +. ...+|..++.--..
T Consensus 411 y~c-skD~~~AfrIFeLGLkk-----f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~ 484 (656)
T KOG1914|consen 411 YYC-SKDKETAFRIFELGLKK-----FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESN 484 (656)
T ss_pred HHh-cCChhHHHHHHHHHHHh-----cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHh
Confidence 665 56779999999998887 66777777888899999999999999999999872 22 56789999988888
Q ss_pred hCCCcchh
Q 048394 476 AGKLASDM 483 (485)
Q Consensus 476 ~g~~~~A~ 483 (485)
-|+.+.++
T Consensus 485 vGdL~si~ 492 (656)
T KOG1914|consen 485 VGDLNSIL 492 (656)
T ss_pred cccHHHHH
Confidence 88876554
No 122
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=2.8e-06 Score=69.62 Aligned_cols=191 Identities=15% Similarity=0.092 Sum_probs=140.2
Q ss_pred hcCCHhHHHHHHHHHHhcc--C-CCCc-HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChh
Q 048394 226 HLNDIDGVERVFYEMCNEC--E-DKCR-WTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLD 301 (485)
Q Consensus 226 ~~~~~~~a~~~~~~~~~~~--~-~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (485)
...+.++..+++.++.... + ..++ +..|..++-+....|+.+.|...++++....|.+..+-..-.-.+-..|+++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh
Confidence 4567788888888776522 2 2233 4556667777778899999999999988866666555555555566788999
Q ss_pred hHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 048394 302 AVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKK 381 (485)
Q Consensus 302 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 381 (485)
+|.++++.+.+..|.|..++-.-+...-..|+.-+|++-+....+.-+. |...|.-+...|...|++++|.-.++++.-
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~-D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN-DQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 9999999998888778888877676777778877888888888777444 889999999999999999999999998886
Q ss_pred cccccCCchhHHHHHHHHHHh---cccHHHHHHHHHHHHHHh
Q 048394 382 RANASARFFKSRESFMIYYLR---SRQLDLALNEMEAALSEA 420 (485)
Q Consensus 382 ~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~ 420 (485)
.. +-++..+..+.+.+.- ..+..-|.++|.+.++..
T Consensus 183 ~~---P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 IQ---PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred cC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 62 2333444555555433 336677888888888763
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.86 E-value=7.9e-07 Score=73.68 Aligned_cols=119 Identities=9% Similarity=-0.022 Sum_probs=57.5
Q ss_pred cCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHH-HhcCc--HHHHH
Q 048394 297 TSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAY-LQKDM--YEEAA 373 (485)
Q Consensus 297 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~A~ 373 (485)
.++.+++...++......|.+...|..+...|...|++++|...|++..+..+. +...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 334444444455555555555555555555555555555555555555544433 444444444432 33343 25555
Q ss_pred HHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 048394 374 LIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSE 419 (485)
Q Consensus 374 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 419 (485)
.++++..+.+ +-+...+..+...+.+.|++++|+..|+++++.
T Consensus 131 ~~l~~al~~d---P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALD---ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5555555443 223344444444455555555555555555544
No 124
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.86 E-value=6.2e-06 Score=77.64 Aligned_cols=268 Identities=14% Similarity=0.132 Sum_probs=161.3
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 048394 151 LNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDI 230 (485)
Q Consensus 151 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 230 (485)
+.+......|.+|+.+++.+...... ..-|..+...|+..|+++.|.++|-+. ..++-.|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 34445567777777777777665422 335677777888888888888877543 2345567778888888
Q ss_pred hHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHh
Q 048394 231 DGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGIL 310 (485)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 310 (485)
+.|.++-++.. +.......|.+-..-+-+.|++.+|.+++-. ...|+ ..|..|-+.|..+..+++.++-
T Consensus 808 ~da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyit---i~~p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYIT---IGEPD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEE---ccCch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 88877766553 3445556666666666677788888777654 33333 3466777888888777776654
Q ss_pred hhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHH----------
Q 048394 311 KSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAK---------- 380 (485)
Q Consensus 311 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------- 380 (485)
.... -..+...+..-+...|++..|+..|-+..+ |.+-+.+|...+-|++|.++-+.--
T Consensus 877 h~d~--l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~f 945 (1636)
T KOG3616|consen 877 HGDH--LHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAF 945 (1636)
T ss_pred Chhh--hhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHH
Confidence 2211 345556677777888888888877765433 3445566666777777666543211
Q ss_pred ----hcccccCCchhHH------HHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHH
Q 048394 381 ----KRANASARFFKSR------ESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEE 450 (485)
Q Consensus 381 ----~~~~~~~p~~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 450 (485)
..|- ..-.... ..-++.-+..+-++-|.++-+-..+. ....+...+..-+...|++++|-+
T Consensus 946 lwaksigg--daavkllnk~gll~~~id~a~d~~afd~afdlari~~k~-------k~~~vhlk~a~~ledegk~edask 1016 (1636)
T KOG3616|consen 946 LWAKSIGG--DAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD-------KMGEVHLKLAMFLEDEGKFEDASK 1016 (1636)
T ss_pred HHHHhhCc--HHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc-------cCccchhHHhhhhhhccchhhhhH
Confidence 0000 0000000 11122223445555555554444333 222333445555677899999988
Q ss_pred HHHHHhhcCC
Q 048394 451 FCKVLKSLNC 460 (485)
Q Consensus 451 ~~~~~~~~~~ 460 (485)
.|-++++++.
T Consensus 1017 hyveaiklnt 1026 (1636)
T KOG3616|consen 1017 HYVEAIKLNT 1026 (1636)
T ss_pred hhHHHhhccc
Confidence 8888877654
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.83 E-value=4.5e-06 Score=75.12 Aligned_cols=142 Identities=14% Similarity=0.054 Sum_probs=108.9
Q ss_pred HHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChh
Q 048394 222 QSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLD 301 (485)
Q Consensus 222 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (485)
..+...|+++.|+..++.+.. ..|.|+.........+.+.++.++|.+.++++....|.....+..+..++.+.|++.
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 345567888888888888777 566667766777788888888888888888888877767777778888888888888
Q ss_pred hHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 048394 302 AVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKK 381 (485)
Q Consensus 302 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 381 (485)
+|..+++......+.++..|..|..+|...|+..++..-.. ..|...|+++.|...+....+
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHH
Confidence 88888888888877788888888888888888776654433 345566888888888877776
Q ss_pred cc
Q 048394 382 RA 383 (485)
Q Consensus 382 ~~ 383 (485)
..
T Consensus 454 ~~ 455 (484)
T COG4783 454 QV 455 (484)
T ss_pred hc
Confidence 54
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.81 E-value=5.3e-06 Score=82.43 Aligned_cols=168 Identities=13% Similarity=0.056 Sum_probs=79.3
Q ss_pred CHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhh-HHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHH
Q 048394 143 NRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVA-FNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWM 221 (485)
Q Consensus 143 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 221 (485)
+...+..|+..+...+++++|.++.+...+.. |+... |-.+...+.+.++.+.+.-+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 34455566666656666666666666544432 33222 22222233444443322222 222
Q ss_pred HHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChh
Q 048394 222 QSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLD 301 (485)
Q Consensus 222 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (485)
.......++.....+...+.. ..-+...+..++.+|-+.|+.++|..+++++.+..|.++.+.|.+...|... +.+
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILL---YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHH
Confidence 222233333222222223322 2233334445555666666666666666666655555566666666665555 555
Q ss_pred hHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 048394 302 AVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESR 347 (485)
Q Consensus 302 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 347 (485)
+|..++.+... .+...+++..+.++|.++...
T Consensus 167 KA~~m~~KAV~--------------~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 167 KAITYLKKAIY--------------RFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHH--------------HHHhhhcchHHHHHHHHHHhc
Confidence 66555555422 244444555555555555544
No 127
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=6e-05 Score=73.77 Aligned_cols=312 Identities=9% Similarity=0.090 Sum_probs=219.4
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHH
Q 048394 86 LRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALA 165 (485)
Q Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 165 (485)
...++-+++|..+|+.. ..+....+.++. .-+.++.|.++-++.. ...+|..+..+-.+.|.+.+|++
T Consensus 1058 ai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n----~p~vWsqlakAQL~~~~v~dAie 1125 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCN----EPAVWSQLAKAQLQGGLVKDAIE 1125 (1666)
T ss_pred HhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhC----ChHHHHHHHHHHHhcCchHHHHH
Confidence 34455566666666543 123333344443 3466777777766664 46789999999999999999998
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccC
Q 048394 166 LFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECE 245 (485)
Q Consensus 166 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 245 (485)
-|-+. -|+..|..++....+.|.|++..+++.-.++..-.|... +.|+-+|++.+++.+..+++
T Consensus 1126 Syika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------- 1189 (1666)
T KOG0985|consen 1126 SYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------- 1189 (1666)
T ss_pred HHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh--------
Confidence 77432 266789999999999999999999998888877666655 46889999999988765544
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHH
Q 048394 246 DKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLL 325 (485)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 325 (485)
.-|+......+.+-|...|.++.|.-++.. ..-|..|...+...|++..|.+.-++. .+..+|-.+-
T Consensus 1190 ~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~Vc 1256 (1666)
T KOG0985|consen 1190 AGPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVC 1256 (1666)
T ss_pred cCCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHH
Confidence 234555555688889999999999888764 466888999999999999988776654 2678898888
Q ss_pred HHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhccc
Q 048394 326 QALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQ 405 (485)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 405 (485)
.+|...+.+.-| +|-..++-....-...++..|-..|-+++-..+++...... +...-.|+.|.-.|++- +
T Consensus 1257 faCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE---RAHMgmfTELaiLYsky-k 1327 (1666)
T KOG0985|consen 1257 FACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE---RAHMGMFTELAILYSKY-K 1327 (1666)
T ss_pred HHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh---HHHHHHHHHHHHHHHhc-C
Confidence 888877766544 23333333455566779999999999999999998776432 33445566666656553 4
Q ss_pred HHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 048394 406 LDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKS 457 (485)
Q Consensus 406 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 457 (485)
+++..+.++-....- + .-.+++++....-|.+..-+|.+..+
T Consensus 1328 p~km~EHl~LFwsRv-------N---ipKviRA~eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1328 PEKMMEHLKLFWSRV-------N---IPKVIRAAEQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred HHHHHHHHHHHHHhc-------c---hHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 566666666655442 1 12356666666666666666655544
No 128
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=8e-05 Score=71.36 Aligned_cols=91 Identities=13% Similarity=0.184 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcc-------------------
Q 048394 79 LEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE------------------- 139 (485)
Q Consensus 79 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------------- 139 (485)
|..+=+.|-..|.+++|+++-+.=.+..+ ..||......+...++.+.|+++|++...
T Consensus 829 ~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Y 905 (1416)
T KOG3617|consen 829 YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQY 905 (1416)
T ss_pred HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHH
Confidence 33444455566777777777665333322 23444445555556667777766664311
Q ss_pred --cCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 048394 140 --YAKNRYTYGALLNCYCKELMTERALALFEKMDE 172 (485)
Q Consensus 140 --~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 172 (485)
...|...|.-....+-..|+.+.|+.+|....+
T Consensus 906 v~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 906 VRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 122444555555555566777777777766543
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.76 E-value=2.2e-05 Score=70.77 Aligned_cols=207 Identities=12% Similarity=0.011 Sum_probs=150.2
Q ss_pred CHHHHHHHHHhhcc----cCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHH
Q 048394 126 GIAAAEKYFNGLSE----YAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPL 201 (485)
Q Consensus 126 ~~~~a~~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 201 (485)
++.++...-+.++. ..|+...+...+.+......-..+-.++.+-.+. .-...-|..-+ .+...|++++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHH
Confidence 45556666666655 4566666777666554444333333333333321 11223344444 45678999999999
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Q 048394 202 VNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKP 281 (485)
Q Consensus 202 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 281 (485)
++.+... .+-|..........+...|+.++|.+.++.+.. ..|......-.+..+|.+.|++.+|..+++......|
T Consensus 329 l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 329 LQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 9999886 333455555567789999999999999999998 4555566677899999999999999999999999899
Q ss_pred CChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhH
Q 048394 282 RDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLA 356 (485)
Q Consensus 282 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 356 (485)
.++..|..|.++|...|+..++..-.. ..+...|+++.|...+....+.. +++..+|
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~A-----------------E~~~~~G~~~~A~~~l~~A~~~~-~~~~~~~ 462 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARA-----------------EGYALAGRLEQAIIFLMRASQQV-KLGFPDW 462 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHH-----------------HHHHhCCCHHHHHHHHHHHHHhc-cCCcHHH
Confidence 999999999999999999988876544 45777899999999999887763 3344443
No 130
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.75 E-value=5.6e-07 Score=70.47 Aligned_cols=103 Identities=6% Similarity=-0.106 Sum_probs=60.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC
Q 048394 219 VWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTS 298 (485)
Q Consensus 219 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 298 (485)
.+...+...|++++|...|+.... ..+.+...+..+..++...|++++|...|+......|.+..++..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 344455556666666666666555 445555555666666666666666666666666655556666666666666666
Q ss_pred ChhhHHHHHHHhhhcCCCChhhHHH
Q 048394 299 NLDAVNRVWGILKSTFPPTNTSYLV 323 (485)
Q Consensus 299 ~~~~a~~~~~~~~~~~~~~~~~~~~ 323 (485)
++++|...|+......+.+...+..
T Consensus 107 ~~~eAi~~~~~Al~~~p~~~~~~~~ 131 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYADASWSEI 131 (144)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHH
Confidence 6666666666665555554444433
No 131
>PF12854 PPR_1: PPR repeat
Probab=98.70 E-value=2.3e-08 Score=55.63 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=16.5
Q ss_pred CCCccHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 048394 209 NISLDNLTYIVWMQSYSHLNDIDGVERVFYEM 240 (485)
Q Consensus 209 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 240 (485)
|+.||..||+++|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555544
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=4.5e-05 Score=62.80 Aligned_cols=190 Identities=11% Similarity=0.012 Sum_probs=153.8
Q ss_pred hCCCcccHHHHHHHHHHc---C-CCccHHH-HHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhccc
Q 048394 191 RLGQPEKVRPLVNQMKQR---N-ISLDNLT-YIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAEL 265 (485)
Q Consensus 191 ~~g~~~~a~~~~~~~~~~---~-~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 265 (485)
...+.++..+++.+++.. | ..|+..+ |..++-+....|+.+.|...++++.. .+|-+..+-..-.-.+-..|+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~--~fp~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRD--RFPGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHhhc
Confidence 456789999999998753 4 4555544 44455677788999999999999988 556666665444555666899
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 048394 266 FEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWE 345 (485)
Q Consensus 266 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 345 (485)
+++|.++++.+.+.+|.|..++---+-..-..|+.-+|++-+....+..+.|...|.-+...|...|+++.|.-.++++.
T Consensus 102 ~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99999999999998888889998888888888999999999999999999999999999999999999999999999998
Q ss_pred HccCCCCHHhHHHHHHHHHhcC---cHHHHHHHHHHHHhcc
Q 048394 346 SRCSSYDMRLADVIIRAYLQKD---MYEEAALIFNNAKKRA 383 (485)
Q Consensus 346 ~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~ 383 (485)
-..+. ++..+..+...+.-.| +.+-|.++|.+..+..
T Consensus 182 l~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 182 LIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 77554 6667777777665544 5667888999888763
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.68 E-value=1.3e-06 Score=68.07 Aligned_cols=115 Identities=8% Similarity=-0.059 Sum_probs=71.8
Q ss_pred HHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Q 048394 341 FEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEA 420 (485)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 420 (485)
++.+.+..+. +......+...+...|++++|...|+.+...+ +.+...+..+...+...|++++|...++.....
T Consensus 6 ~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~- 80 (135)
T TIGR02552 6 LKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD---PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL- 80 (135)
T ss_pred HHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 4444443332 33444556666666777777777777766653 335556666666666777777777777776665
Q ss_pred hhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHH
Q 048394 421 KQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFS 464 (485)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 464 (485)
.+.+...+..+...+...|+++.|...++.+.+..|.+..
T Consensus 81 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 ----DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred ----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 3345566666666777777777777777777777666544
No 134
>PF12854 PPR_1: PPR repeat
Probab=98.65 E-value=4.9e-08 Score=54.35 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=15.2
Q ss_pred CCCCChhhHHHHHHHHHhhCCHHHHHHHHHhh
Q 048394 106 KMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGL 137 (485)
Q Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 137 (485)
|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.64 E-value=1.8e-06 Score=67.33 Aligned_cols=94 Identities=14% Similarity=0.027 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhc
Q 048394 287 YHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQK 366 (485)
Q Consensus 287 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 366 (485)
...+...+...|++++|.+.++.+...++.+...+..+..++...|++++|...++...+.++. +...+..+...|...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHc
Confidence 3333333334444444444444433333333333333344444444444444444433333221 233333333334444
Q ss_pred CcHHHHHHHHHHHHh
Q 048394 367 DMYEEAALIFNNAKK 381 (485)
Q Consensus 367 ~~~~~A~~~~~~~~~ 381 (485)
|++++|...|++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 99 GEPESALKALDLAIE 113 (135)
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444443333
No 136
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=2.1e-05 Score=65.21 Aligned_cols=151 Identities=12% Similarity=0.088 Sum_probs=75.2
Q ss_pred HHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHH----
Q 048394 186 STMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYV---- 261 (485)
Q Consensus 186 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 261 (485)
...|++.|++++|++...... +......-+..+.+..+++-|.+.++.|.+ .. +..+.+-|..++.
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~--id--ed~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ--ID--EDATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cc--hHHHHHHHHHHHHHHhc
Confidence 344556666666665554411 122222223344455566666666666655 11 2222332333333
Q ss_pred hcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCCh-hHHHHH
Q 048394 262 KAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAI-DILKQC 340 (485)
Q Consensus 262 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~ 340 (485)
..+.+.+|.-+|+++.+..+|++.+.+-.+.++...|++++|..+++........++.+...++-+....|.. +...+.
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 2344556666666665555556666666666666666666666666666665555555554444444444433 223334
Q ss_pred HHHHHH
Q 048394 341 FEEWES 346 (485)
Q Consensus 341 ~~~~~~ 346 (485)
+.++..
T Consensus 265 l~QLk~ 270 (299)
T KOG3081|consen 265 LSQLKL 270 (299)
T ss_pred HHHHHh
Confidence 444443
No 137
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.60 E-value=0.00077 Score=65.61 Aligned_cols=203 Identities=9% Similarity=0.052 Sum_probs=134.7
Q ss_pred HHHHHHH--HHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHh
Q 048394 79 LEYCVRS--LRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCK 156 (485)
Q Consensus 79 ~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~ 156 (485)
+..++++ +.+.|+.++|..+++....-+.. |..|...+-.+|...|+.++|..+++...+..|+......+..+|.+
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR 122 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVR 122 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHH
Confidence 4444444 46889999999888887666543 78888888889999999999999999999977888888888888888
Q ss_pred cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC-Ccc---------cHHHHHHHHHHcC-CCccHHHHHHHHHHHH
Q 048394 157 ELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLG-QPE---------KVRPLVNQMKQRN-ISLDNLTYIVWMQSYS 225 (485)
Q Consensus 157 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~---------~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~ 225 (485)
.+.+.+-.++--+|-+. .+-+...|-++++.....- ..+ -|.+.++.+.+.+ ---+..-...-...+.
T Consensus 123 ~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~ 201 (932)
T KOG2053|consen 123 EKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILE 201 (932)
T ss_pred HHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHH
Confidence 88887655544444432 2225556666666655432 222 2444555555443 1111122222234456
Q ss_pred hcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCC
Q 048394 226 HLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRD 283 (485)
Q Consensus 226 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 283 (485)
..|++++|..++..-....-.+.+...-+.-+..+...+++.+..++..++....+.|
T Consensus 202 ~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 202 LQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred hcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 7788999999984333213444445555567788888899999998888888866655
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.59 E-value=1.6e-06 Score=78.72 Aligned_cols=123 Identities=19% Similarity=0.102 Sum_probs=64.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHH
Q 048394 322 LVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYL 401 (485)
Q Consensus 322 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 401 (485)
..++..+...++++.|.++++++.+.. |+ ....+++.+...++..+|.+++++..... +.+...+..-...|.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~---p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN---PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHH
Confidence 344444445556666666666665553 22 22335555555555556666665555442 223333333344455
Q ss_pred hcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHh
Q 048394 402 RSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLK 456 (485)
Q Consensus 402 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 456 (485)
+.++++.|+.+.+++... .+.+..+|..|..+|...|+++.|...++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~l-----sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL-----SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHh-----CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 566666666666666654 23334466666666666666666665555443
No 139
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.49 E-value=0.0015 Score=63.79 Aligned_cols=221 Identities=14% Similarity=0.154 Sum_probs=119.1
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHH--HhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHH
Q 048394 156 KELMTERALALFEKMDELKFLGNTVAFNNLSTMY--LRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGV 233 (485)
Q Consensus 156 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 233 (485)
..+++.+|.+...++.+.- |+. .|..++.++ .+.|+.++|..+++....-+.. |..|...+-.+|...++.++|
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence 4466666666666665543 332 233333332 4566666666666655544332 556666666666666666666
Q ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC----------hhhH
Q 048394 234 ERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSN----------LDAV 303 (485)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a 303 (485)
..+|+...+ ..|+......+..+|++.+++.+-.++--++-+..|.++..+-.+++.+.+.-. ..-|
T Consensus 97 ~~~Ye~~~~---~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQ---KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHh---hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 666666655 333455555566666666666655555555555555555555555555443221 1223
Q ss_pred HHHHHHhhhcC-CC-ChhhHHHHHHHHHhcCChhHHHHHHH-HHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 048394 304 NRVWGILKSTF-PP-TNTSYLVLLQALAKLNAIDILKQCFE-EWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAK 380 (485)
Q Consensus 304 ~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 380 (485)
.+.++.+.+.+ .- +..-.......+...|++++|.+++. ...+.-...+...-+.-+..+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 44444444433 22 22223333344455666777777763 33333333344444555666666777777777777766
Q ss_pred hcc
Q 048394 381 KRA 383 (485)
Q Consensus 381 ~~~ 383 (485)
..|
T Consensus 254 ~k~ 256 (932)
T KOG2053|consen 254 EKG 256 (932)
T ss_pred HhC
Confidence 664
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.41 E-value=1.9e-05 Score=71.93 Aligned_cols=124 Identities=14% Similarity=0.150 Sum_probs=94.9
Q ss_pred HHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh
Q 048394 183 NNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVK 262 (485)
Q Consensus 183 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (485)
..++..+...++++.|+.+|+++.+.. |+. ...+++.+...++-.+|.+++++..+ ..+-+...+...+..+.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHh
Confidence 344555666778888888888888764 443 34467777777788888888888876 566677777777778888
Q ss_pred cccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhh
Q 048394 263 AELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKS 312 (485)
Q Consensus 263 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 312 (485)
.++++.|+.+.+++....|.+..+|..|..+|...|+++.|+..++.+.-
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 88888888888888888887888888888888888888888888776643
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.40 E-value=1.9e-05 Score=62.14 Aligned_cols=116 Identities=18% Similarity=0.126 Sum_probs=62.0
Q ss_pred cCChhhHHHHHHHhhhcCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCC--HHhHHHHHHHHHhcCcHHH
Q 048394 297 TSNLDAVNRVWGILKSTFPPT---NTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYD--MRLADVIIRAYLQKDMYEE 371 (485)
Q Consensus 297 ~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ 371 (485)
.++...+...++.+....+.+ ......+...+...|++++|...|+.+......|+ ......+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 555566666666666555553 22333344555666666666666666665543222 1223335555666666666
Q ss_pred HHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHH
Q 048394 372 AALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAA 416 (485)
Q Consensus 372 A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (485)
|+..++..... ......+....+.|.+.|++++|...|+..
T Consensus 104 Al~~L~~~~~~----~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIPDE----AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhccCc----chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 66666543222 222334445555666666666666666543
No 142
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=2.9e-05 Score=65.75 Aligned_cols=110 Identities=15% Similarity=-0.013 Sum_probs=93.4
Q ss_pred HHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhc
Q 048394 363 YLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEE 442 (485)
Q Consensus 363 ~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 442 (485)
+.+.+++++|+..|.+.++.. +-|.+.|..=..+|.+.|.++.|++-.+..+... +-...+|..|..+|...
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~---P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-----p~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD---PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-----PHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC---CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHcc
Confidence 567799999999999999874 4455666777888999999999999999998863 33467899999999999
Q ss_pred CChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCc
Q 048394 443 KDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLA 480 (485)
Q Consensus 443 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 480 (485)
|++++|++.|++.++++|.+...+..|-.+-.+.+...
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999888877766655
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.35 E-value=2.2e-05 Score=59.51 Aligned_cols=112 Identities=12% Similarity=-0.098 Sum_probs=80.4
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHH
Q 048394 355 LADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDT 434 (485)
Q Consensus 355 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (485)
++..++..+.+.|++++|...|.++.............+..+...+.+.|++++|...|+.+.... ++.+.....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCCcccHHHHH
Confidence 445577778888999999999988886531001112355667788888999999999999988764 111122456777
Q ss_pred HHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHH
Q 048394 435 FFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSL 468 (485)
Q Consensus 435 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 468 (485)
+..++...|++++|.+.++++.+..|.++.+...
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 7788888899999999999999988887765544
No 144
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=0.00042 Score=61.33 Aligned_cols=88 Identities=16% Similarity=0.060 Sum_probs=41.9
Q ss_pred HhcCChhHHHHHHHHHHHcc---CCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhccc
Q 048394 329 AKLNAIDILKQCFEEWESRC---SSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQ 405 (485)
Q Consensus 329 ~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 405 (485)
.+.|.+..|.+.|.+.+... ..|+...|.....+..+.|+.++|+.--++..+.+. --...|..-..++...++
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~---syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS---SYIKALLRRANCHLALEK 336 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH---HHHHHHHHHHHHHHHHHH
Confidence 34556666666666555432 233444555555555556666666655555544321 000111111223334555
Q ss_pred HHHHHHHHHHHHHH
Q 048394 406 LDLALNEMEAALSE 419 (485)
Q Consensus 406 ~~~A~~~~~~~~~~ 419 (485)
|++|.+-++...+.
T Consensus 337 ~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHhh
Confidence 66666666555554
No 145
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.28 E-value=1.5e-06 Score=49.23 Aligned_cols=33 Identities=36% Similarity=0.507 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC
Q 048394 146 TYGALLNCYCKELMTERALALFEKMDELKFLGN 178 (485)
Q Consensus 146 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 178 (485)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666777777777776666666665
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.26 E-value=8.1e-05 Score=58.58 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=58.1
Q ss_pred cccHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC---ChhhHHHHHHHHHhcCChhH
Q 048394 263 AELFEKAELALKKLEEMKPRD---RKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP---TNTSYLVLLQALAKLNAIDI 336 (485)
Q Consensus 263 ~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~ 336 (485)
.++...+...++.+....|.+ ......+...+...|++++|...|+.+....+. .......+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555555555533333 223333445555556666666666655554432 12233345555556666666
Q ss_pred HHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHH
Q 048394 337 LKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNN 378 (485)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 378 (485)
|+..++...... .....+......|...|++++|...|+.
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666665432221 2333445555666666666666666654
No 147
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=5.5e-05 Score=66.71 Aligned_cols=266 Identities=9% Similarity=-0.063 Sum_probs=117.3
Q ss_pred HHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcc
Q 048394 185 LSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAE 264 (485)
Q Consensus 185 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 264 (485)
....+.+..++..|+..+....+.. +-+..-|..-+..+...|++++|.--.+.-.+ -.+-....+.....++...+
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r--~kd~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVR--LKDGFSKGQLREGQCHLALS 131 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhhee--cCCCccccccchhhhhhhhH
Confidence 3344555556666666666666553 22344444445555555666665554444333 12222223444555555555
Q ss_pred cHHHHHHHHHHHHh------------cC-----CCChHHHHHH-HHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHH
Q 048394 265 LFEKAELALKKLEE------------MK-----PRDRKAYHFL-ISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQ 326 (485)
Q Consensus 265 ~~~~A~~~~~~~~~------------~~-----~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 326 (485)
+..+|.+.++.-.. .. +|.-.+|..+ ..++...|+.++|.++--.+.+....+......-..
T Consensus 132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~ 211 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGL 211 (486)
T ss_pred HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccc
Confidence 55555555542210 00 0111222221 223444555666655555555544443333333333
Q ss_pred HHHhcCChhHHHHHHHHHHHccCCCC-HHhHHHHHHHH----------HhcCcHHHHHHHHHHHHhccc-ccCCchhHHH
Q 048394 327 ALAKLNAIDILKQCFEEWESRCSSYD-MRLADVIIRAY----------LQKDMYEEAALIFNNAKKRAN-ASARFFKSRE 394 (485)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~----------~~~~~~~~A~~~~~~~~~~~~-~~~p~~~~~~ 394 (485)
++...++.+.+...|++.+..++... ..+.....+.+ .+.|++.+|.+.|.+.+..+. ...|+...|.
T Consensus 212 ~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~ 291 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYG 291 (486)
T ss_pred ccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHH
Confidence 34445556666666665555432210 11111122221 234555566666655554421 0011222233
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhhcCChhhHHHHHHHHhhcC
Q 048394 395 SFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPM-QVTVDTFFRFFEEEKDVDGAEEFCKVLKSLN 459 (485)
Q Consensus 395 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 459 (485)
.......+.|+..+|+.-.++..+.. +. ...+..-..++.-.++|++|.+-++++.+..
T Consensus 292 nra~v~~rLgrl~eaisdc~~Al~iD------~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 292 NRALVNIRLGRLREAISDCNEALKID------SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HhHhhhcccCCchhhhhhhhhhhhcC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33334445566666665555554431 11 1111111234444555666666666555543
No 148
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.22 E-value=5.9e-05 Score=69.00 Aligned_cols=102 Identities=10% Similarity=-0.072 Sum_probs=54.5
Q ss_pred HHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhc
Q 048394 363 YLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEE 442 (485)
Q Consensus 363 ~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 442 (485)
+...|++++|...|+++++.+ +.+...|..+..+|.+.|++++|+..+++++.. .+.+...|..+..+|...
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~---P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l-----~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD---PNNAELYADRAQANIKLGNFTEAVADANKAIEL-----DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCCHHHHHHHHHHHHHh
Confidence 344455555555555555543 223344445555555555556665555555554 223444555555555555
Q ss_pred CChhhHHHHHHHHhhcCCCCHHHHHHHHHH
Q 048394 443 KDVDGAEEFCKVLKSLNCLDFSAYSLLIKT 472 (485)
Q Consensus 443 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 472 (485)
|++++|...|+++++..|.++.....+..+
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 566666666655555555555555444444
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.18 E-value=4.6e-05 Score=54.88 Aligned_cols=88 Identities=24% Similarity=0.250 Sum_probs=37.7
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCh
Q 048394 221 MQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNL 300 (485)
Q Consensus 221 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 300 (485)
...+...|++++|...++.+.+ ..+.+...+..+..++...+++++|...++......+.+..++..+...+...|++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 3334444444444444444443 22222233344444444444444444444444443333334444444444444444
Q ss_pred hhHHHHHHHh
Q 048394 301 DAVNRVWGIL 310 (485)
Q Consensus 301 ~~a~~~~~~~ 310 (485)
+.|...+...
T Consensus 85 ~~a~~~~~~~ 94 (100)
T cd00189 85 EEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 150
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.17 E-value=4.7e-05 Score=58.72 Aligned_cols=96 Identities=10% Similarity=-0.092 Sum_probs=74.4
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHH
Q 048394 356 ADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTF 435 (485)
Q Consensus 356 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 435 (485)
.-.+..-+...|++++|..+|+-+...+ +-+..-|..|...+-..|++.+|+..|...... .+.|+..+-.+
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D---p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-----~~ddp~~~~~a 109 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD---AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-----KIDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCchHHHHH
Confidence 3345566778889999999988887764 345556667777777888899999999888887 34567778888
Q ss_pred HHHHhhcCChhhHHHHHHHHhhcC
Q 048394 436 FRFFEEEKDVDGAEEFCKVLKSLN 459 (485)
Q Consensus 436 ~~~~~~~~~~~~A~~~~~~~~~~~ 459 (485)
..++...|+.+.|.+.|+.++...
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHh
Confidence 888888899999998888888755
No 151
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.16 E-value=2.7e-06 Score=48.14 Aligned_cols=33 Identities=27% Similarity=0.399 Sum_probs=27.9
Q ss_pred hHHHHHHHHHhCCCcccHHHHHHHHHHcCCCcc
Q 048394 181 AFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLD 213 (485)
Q Consensus 181 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 213 (485)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888876
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.16 E-value=4.3e-05 Score=55.04 Aligned_cols=93 Identities=20% Similarity=0.220 Sum_probs=54.1
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCC
Q 048394 254 SNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNA 333 (485)
Q Consensus 254 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 333 (485)
..++..+...|++++|...++.+.+..|.+...+..+...+...+++++|...++......+.+...+..+...+...|+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 34555556666666666666666655554555555666666666666666666666555555444455555555555555
Q ss_pred hhHHHHHHHHHHH
Q 048394 334 IDILKQCFEEWES 346 (485)
Q Consensus 334 ~~~a~~~~~~~~~ 346 (485)
.+.|...+....+
T Consensus 84 ~~~a~~~~~~~~~ 96 (100)
T cd00189 84 YEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHc
Confidence 5555555555443
No 153
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.15 E-value=3.5e-06 Score=47.29 Aligned_cols=32 Identities=38% Similarity=0.450 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC
Q 048394 146 TYGALLNCYCKELMTERALALFEKMDELKFLG 177 (485)
Q Consensus 146 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 177 (485)
+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 55566666666666666666666666555554
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.15 E-value=4.8e-06 Score=58.48 Aligned_cols=79 Identities=10% Similarity=0.021 Sum_probs=38.7
Q ss_pred cCcHHHHHHHHHHHHhcccccCC---chhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhc
Q 048394 366 KDMYEEAALIFNNAKKRANASAR---FFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEE 442 (485)
Q Consensus 366 ~~~~~~A~~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 442 (485)
.|+++.|+.+++++.+. .| +...+..+..+|.+.|++++|+.++++ ...+ +.+......+..++.+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~----~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-----~~~~~~~~l~a~~~~~l 71 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLEL----DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-----PSNPDIHYLLARCLLKL 71 (84)
T ss_dssp TT-HHHHHHHHHHHHHH----HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-----HCHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHH----CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-----CCCHHHHHHHHHHHHHh
Confidence 35556666666666555 33 223333355555666666666666655 2221 11223333334555666
Q ss_pred CChhhHHHHHHH
Q 048394 443 KDVDGAEEFCKV 454 (485)
Q Consensus 443 ~~~~~A~~~~~~ 454 (485)
|++++|++++++
T Consensus 72 ~~y~eAi~~l~~ 83 (84)
T PF12895_consen 72 GKYEEAIKALEK 83 (84)
T ss_dssp T-HHHHHHHHHH
T ss_pred CCHHHHHHHHhc
Confidence 666666655554
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.15 E-value=0.0001 Score=55.82 Aligned_cols=60 Identities=13% Similarity=0.137 Sum_probs=24.5
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCC
Q 048394 256 LASIYVKAELFEKAELALKKLEEMKPR---DRKAYHFLISLYCNTSNLDAVNRVWGILKSTFP 315 (485)
Q Consensus 256 l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 315 (485)
++.++.+.|+++.|...++.+....|. ...++..+..++.+.|++++|...++++....|
T Consensus 45 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 45 LGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 444444444444444444444432221 123333444444444444444444444444433
No 156
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.14 E-value=0.0004 Score=61.53 Aligned_cols=147 Identities=16% Similarity=0.099 Sum_probs=82.8
Q ss_pred HHHHHHHHhc-CChhHHHHHHHHHHHccC---CC--CHHhHHHHHHHHHhcCcHHHHHHHHHHHHhccccc---CCchh-
Q 048394 322 LVLLQALAKL-NAIDILKQCFEEWESRCS---SY--DMRLADVIIRAYLQKDMYEEAALIFNNAKKRANAS---ARFFK- 391 (485)
Q Consensus 322 ~~l~~~~~~~-~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~p~~~- 391 (485)
..+...|... |+++.|.+.|++..+.-. .+ -..++..+...+.+.|++++|..+|+++....... ..+..
T Consensus 118 ~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~ 197 (282)
T PF14938_consen 118 KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKE 197 (282)
T ss_dssp HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 3456667776 888888888887755311 11 13456677888899999999999999887643200 11111
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHH
Q 048394 392 SRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLL 469 (485)
Q Consensus 392 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 469 (485)
.|-..+-.+...||...|...+++.....+.............|+.++. .||.+.....+...-...+.|+.--..|
T Consensus 198 ~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~-~~D~e~f~~av~~~d~~~~ld~w~~~~l 274 (282)
T PF14938_consen 198 YFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE-EGDVEAFTEAVAEYDSISRLDNWKTKML 274 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH-TT-CCCHHHHCHHHTTSS---HHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-hCCHHHHHHHHHHHcccCccHHHHHHHH
Confidence 1222333556788999999999998776422222233456666777654 4555555555555444444444433333
No 157
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.12 E-value=3.8e-06 Score=47.15 Aligned_cols=33 Identities=21% Similarity=0.436 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCc
Q 048394 180 VAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISL 212 (485)
Q Consensus 180 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 212 (485)
.+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888877776
No 158
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.11 E-value=0.0014 Score=56.39 Aligned_cols=179 Identities=15% Similarity=0.149 Sum_probs=105.3
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCCChHHH---HHHHHHHHhcCChhhHHHHHHHhhhcCCC-ChhhHHHHHHHHHh
Q 048394 255 NLASIYVKAELFEKAELALKKLEEMKPRDRKAY---HFLISLYCNTSNLDAVNRVWGILKSTFPP-TNTSYLVLLQALAK 330 (485)
Q Consensus 255 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 330 (485)
.....+...|++++|.+.|+.+....|.+.... ..++.++.+.+++++|...+++..+..|. ....+...+.+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 345555667778888888777777555444433 45566777778888888888877777776 33344333333321
Q ss_pred --cC---------------C---hhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCch
Q 048394 331 --LN---------------A---IDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFF 390 (485)
Q Consensus 331 --~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~ 390 (485)
.+ | ...|.+.|+.+++. |=...-..+|...+..+...=- .
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~la-----~ 176 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDRLA-----K 176 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHHHH-----H
Confidence 11 1 12233444444433 3333334455544444433210 0
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHh
Q 048394 391 KSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLK 456 (485)
Q Consensus 391 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 456 (485)
.-+ .+...|.+.|.+..|+.-++.+++.- |+.+........++.+|...|..++|..+...+.
T Consensus 177 ~e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Y--p~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YEL-SVAEYYTKRGAYVAVVNRVEQMLRDY--PDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHH-HHHHHHHHcCchHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 111 44566888889999999999988874 2223344566677788888898888888776554
No 159
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.10 E-value=0.00016 Score=63.80 Aligned_cols=131 Identities=12% Similarity=0.061 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHH-HHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHH
Q 048394 285 KAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQA-LAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAY 363 (485)
Q Consensus 285 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 363 (485)
.+|..++...-+.+..+.|..+|.+..+....+...|...+.. +...++.+.|.++|+...+.-.. +...|...++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~-~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS-DPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 4566677777777777777777777764444345555544444 22345566677777777665333 666677777777
Q ss_pred HhcCcHHHHHHHHHHHHhcccccCCc---hhHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 048394 364 LQKDMYEEAALIFNNAKKRANASARF---FKSRESFMIYYLRSRQLDLALNEMEAALSE 419 (485)
Q Consensus 364 ~~~~~~~~A~~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 419 (485)
...|+.+.|..+|++.... + .++ ...|...+..=.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l--~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-L--PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-S--SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-c--CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777776654 2 221 236666666666777777777777777665
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.09 E-value=0.00027 Score=57.47 Aligned_cols=114 Identities=17% Similarity=0.066 Sum_probs=57.4
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCc--hhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHH
Q 048394 355 LADVIIRAYLQKDMYEEAALIFNNAKKRANASARF--FKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTV 432 (485)
Q Consensus 355 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 432 (485)
.+..+...+...|++++|...|++..+... .++ ...+..+...+.+.|++++|...+++.++. .+.+...+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~ 109 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEE--DPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL-----NPKQPSAL 109 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcccHHHH
Confidence 344444455555555555555555544321 111 234444455555555555555555555554 22233344
Q ss_pred HHHHHHHhhcCC--------------hhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCC
Q 048394 433 DTFFRFFEEEKD--------------VDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGK 478 (485)
Q Consensus 433 ~~l~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 478 (485)
..+..++...|+ +++|.++++++.+.+|.+ +..++..+...|+
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 444444444443 466777777777766655 4444454444444
No 161
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.09 E-value=9.4e-05 Score=57.09 Aligned_cols=94 Identities=6% Similarity=-0.060 Sum_probs=59.9
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCC
Q 048394 254 SNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNA 333 (485)
Q Consensus 254 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 333 (485)
-.+...+...|++++|..+|+.+...+|.+..-|..|.-++-..|++++|+..|.......+.++..+-.+..++...|+
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC
Confidence 33455555666666666666666666666666666666666666666666666666666665566666666666666666
Q ss_pred hhHHHHHHHHHHHc
Q 048394 334 IDILKQCFEEWESR 347 (485)
Q Consensus 334 ~~~a~~~~~~~~~~ 347 (485)
.+.|.+.|+.....
T Consensus 119 ~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 119 VCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666655443
No 162
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.06 E-value=2.2e-05 Score=52.52 Aligned_cols=66 Identities=20% Similarity=0.130 Sum_probs=53.8
Q ss_pred HhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHH
Q 048394 401 LRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIK 471 (485)
Q Consensus 401 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 471 (485)
.+.|++++|++.|+++... .+.+...+..+..+|.+.|++++|.++++++....|.++..+..+++
T Consensus 2 l~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR-----NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH-----TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 5678999999999999887 45577788888899999999999999999999988887766666543
No 163
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.04 E-value=0.0018 Score=55.63 Aligned_cols=176 Identities=10% Similarity=-0.054 Sum_probs=112.0
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhH---HHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHH
Q 048394 283 DRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSY---LVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVI 359 (485)
Q Consensus 283 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 359 (485)
+...+-.....+...|++++|...|+.+....|.+.... ..++.++.+.++++.|...+++..+..+.....-+...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 344444556666778888888888888888777644333 55677778888888888888888876554333333333
Q ss_pred HHHHHh--cC---------------c---HHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 048394 360 IRAYLQ--KD---------------M---YEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSE 419 (485)
Q Consensus 360 ~~~~~~--~~---------------~---~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 419 (485)
..+.+. .+ + ..+|...|+++++. -|+..- ..+|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----yP~S~y-------------a~~A~~rl~~l~~~ 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----YPNSQY-------------TTDATKRLVFLKDR 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----CcCChh-------------HHHHHHHHHHHHHH
Confidence 333221 11 1 23455566666655 454321 23333333333222
Q ss_pred hhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCC---CHHHHHHHHHHHHHhCCCcchh
Q 048394 420 AKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCL---DFSAYSLLIKTYIAAGKLASDM 483 (485)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~ 483 (485)
.-... ..+..-|.+.|.+..|..-++.+++..|. ...+...++.+|...|..++|-
T Consensus 174 -------la~~e-~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~ 232 (243)
T PRK10866 174 -------LAKYE-LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQAD 232 (243)
T ss_pred -------HHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHH
Confidence 00111 24556788999999999999999998775 5678899999999999988874
No 164
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.04 E-value=7.5e-05 Score=68.40 Aligned_cols=120 Identities=13% Similarity=0.119 Sum_probs=83.3
Q ss_pred CCChhhHHHHHHHHHhhCCHHHHHHHHHhhccc----CCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHH
Q 048394 108 HFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEY----AKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFN 183 (485)
Q Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 183 (485)
+.+......+++.+....+++.+..++-+.... .--..+..++|+.|.+.|..++++.+++.=..-|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 455556666677666666777777777666651 1112345577777777788888888777777777778888888
Q ss_pred HHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 048394 184 NLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHL 227 (485)
Q Consensus 184 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 227 (485)
.||..+.+.|++..|.++..+|...+.-.+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888887777777666666666666666665554
No 165
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.04 E-value=0.00036 Score=61.53 Aligned_cols=145 Identities=17% Similarity=0.118 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-cCChhhHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 048394 251 TTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCN-TSNLDAVNRVWGILKSTFPPTNTSYLVLLQALA 329 (485)
Q Consensus 251 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 329 (485)
.+|..++...-+.+..+.|..+|.++.+....+...|...+..-.. .++.+.|..+|+...+..+.+...|...++.+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 4677888888888999999999999986544456667666666344 567777999999999888888888899999999
Q ss_pred hcCChhHHHHHHHHHHHccCCCC---HHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHH
Q 048394 330 KLNAIDILKQCFEEWESRCSSYD---MRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYY 400 (485)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 400 (485)
..++.+.|..+|+..... +.++ ...|...++.-.+.|+.+.+..+.+++.+. .|+......+++-|
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~----~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL----FPEDNSLELFSDRY 150 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH----TTTS-HHHHHHCCT
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----hhhhhHHHHHHHHh
Confidence 999999999999998765 2222 358888888888899999999999988876 55544444444433
No 166
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.017 Score=55.63 Aligned_cols=402 Identities=10% Similarity=0.030 Sum_probs=196.7
Q ss_pred CCchhHHHHHHhhcCCCCcHHHHHHHHHH------------hCCCCCHHHHHHHHHH------HHHcCChHHHHHHHHHH
Q 048394 41 GNEDKLYKRLSALGATGGSVTGALNAYIM------------EGKTVRKDMLEYCVRS------LRKFGRYRHALEVIEWM 102 (485)
Q Consensus 41 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~------------~g~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~~ 102 (485)
.+-..||++..+.....+...+.+..+++ .+..-.+..-..++++ +.+..++++-..+...+
T Consensus 336 ePgA~L~eA~q~~e~~S~kade~L~~~~e~L~~aV~~CI~aA~~ef~pe~QK~LL~AAsfGk~~l~~~~~d~~~~v~~~l 415 (829)
T KOG2280|consen 336 EPGALLYEAFQKMEQKSGKADEYLSEIREDLYKAVDDCIEAACDEFQPEEQKSLLRAASFGKASLRTPNPDEYMRVCREL 415 (829)
T ss_pred CchHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHhhcccccccCChHHHHHHHHHH
Confidence 35667888887777777777666666552 2223333333344433 23444555554444433
Q ss_pred --------HhCCCCCChhhHHH-----HHHHHHhhCCHHHHHHHHHhhcc-cCCCHhHHHHHHHHHHhcCcH--HHHHHH
Q 048394 103 --------ESRKMHFSYTDFAV-----YLDLTAKTNGIAAAEKYFNGLSE-YAKNRYTYGALLNCYCKELMT--ERALAL 166 (485)
Q Consensus 103 --------~~~~~~~~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~--~~A~~~ 166 (485)
...|++.+..-|.. +++-+...+.+..|.++-..+.. ...+..+|.....-+.+..+. +++.+.
T Consensus 416 rVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~ 495 (829)
T KOG2280|consen 416 RVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDK 495 (829)
T ss_pred HHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHH
Confidence 34566666665544 35666667778888887776655 111256666666666665322 223333
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCC----ccHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 048394 167 FEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNIS----LDNLTYIVWMQSYSHLNDIDGVERVFYEMCN 242 (485)
Q Consensus 167 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (485)
.++=...... ...+|..+.+-....|+++-|..+++.=...+.. .+..-+...+.-+...|+.+....++-.+.+
T Consensus 496 I~~kls~~~~-~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 496 IDEKLSAKLT-PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred HHHHhcccCC-CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 3322222123 3446777777677788888777766432211100 0111223334444455555555554444433
Q ss_pred ccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHhcCChhhHHHHHH--Hhhhc-CCC-C
Q 048394 243 ECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEE-MKPRDRKAYHFLISLYCNTSNLDAVNRVWG--ILKST-FPP-T 317 (485)
Q Consensus 243 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~-~~~-~ 317 (485)
... .. +......+.-.|..++..+.+ .+.. .+-+.|- .++-..+...|. ..... ... -
T Consensus 575 --~~~--~s------~l~~~l~~~p~a~~lY~~~~r~~~~~------~l~d~y~-q~dn~~~~a~~~~q~~~~~~~~~~r 637 (829)
T KOG2280|consen 575 --KLN--RS------SLFMTLRNQPLALSLYRQFMRHQDRA------TLYDFYN-QDDNHQALASFHLQASYAAETIEGR 637 (829)
T ss_pred --HHH--HH------HHHHHHHhchhhhHHHHHHHHhhchh------hhhhhhh-cccchhhhhhhhhhhhhhhhhhccc
Confidence 000 00 000111122223333333222 1110 0111111 111111111111 10000 000 1
Q ss_pred hhhHHHHHHHHHhcCChhH----------HHHHHHHHH-HccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhccccc
Q 048394 318 NTSYLVLLQALAKLNAIDI----------LKQCFEEWE-SRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANAS 386 (485)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~----------a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 386 (485)
........+++.+.....- -.++.+.+. +.|..-..-+.+--+.-+...|+..+|.++-.+.+
T Consensus 638 ~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk------ 711 (829)
T KOG2280|consen 638 IPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK------ 711 (829)
T ss_pred chhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC------
Confidence 1222233344443333111 111111221 11222233344445556677788888888776665
Q ss_pred CCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHH
Q 048394 387 ARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAY 466 (485)
Q Consensus 387 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 466 (485)
-||...|..-+.+++..+++++-.++-+... ++.-|..++.+|.+.|+.++|.+++-++... +
T Consensus 712 ipdKr~~wLk~~aLa~~~kweeLekfAkskk----------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l----~--- 774 (829)
T KOG2280|consen 712 IPDKRLWWLKLTALADIKKWEELEKFAKSKK----------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL----Q--- 774 (829)
T ss_pred CcchhhHHHHHHHHHhhhhHHHHHHHHhccC----------CCCCchhHHHHHHhcccHHHHhhhhhccCCh----H---
Confidence 6777778777888888888877665544432 2445666888888888888888887655332 1
Q ss_pred HHHHHHHHHhCCCcchhc
Q 048394 467 SLLIKTYIAAGKLASDMR 484 (485)
Q Consensus 467 ~~l~~~~~~~g~~~~A~~ 484 (485)
..+.+|.+.|++.+|.+
T Consensus 775 -ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 775 -EKVKAYLRVGDVKEAAD 791 (829)
T ss_pred -HHHHHHHHhccHHHHHH
Confidence 56777888888777753
No 167
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.99 E-value=3.9e-05 Score=50.70 Aligned_cols=63 Identities=14% Similarity=0.032 Sum_probs=48.6
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCH
Q 048394 396 FMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDF 463 (485)
Q Consensus 396 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 463 (485)
+...+.+.|++++|...|+++++. .+-+...+..+..++...|++++|..+|+++++..|.++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~-----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ-----DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC-----STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 345677888888888888888887 444677788888888888888888888888888887764
No 168
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.99 E-value=0.00027 Score=64.73 Aligned_cols=94 Identities=16% Similarity=0.088 Sum_probs=45.4
Q ss_pred HHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHH
Q 048394 189 YLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEK 268 (485)
Q Consensus 189 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 268 (485)
+...|++++|++.|++.++.. +-+...|..+..+|...|++++|+..++.+.. ..+.+...|..+..+|...|++++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCCHHH
Confidence 344455555555555555432 12334444444455555555555555555544 333344444455555555555555
Q ss_pred HHHHHHHHHhcCCCChH
Q 048394 269 AELALKKLEEMKPRDRK 285 (485)
Q Consensus 269 A~~~~~~~~~~~~~~~~ 285 (485)
|...|++.....|.+..
T Consensus 89 A~~~~~~al~l~P~~~~ 105 (356)
T PLN03088 89 AKAALEKGASLAPGDSR 105 (356)
T ss_pred HHHHHHHHHHhCCCCHH
Confidence 55555555554443333
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.98 E-value=2.6e-05 Score=54.73 Aligned_cols=80 Identities=13% Similarity=0.145 Sum_probs=32.2
Q ss_pred CCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHH
Q 048394 228 NDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVW 307 (485)
Q Consensus 228 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 307 (485)
|+++.|+.+++.+.+.....++...+..++.+|.+.|++++|..+++. .+..+.+......+..++.+.|++++|+.++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 444445555554444111111222333344445555555555555444 2222222233333344444555555554444
Q ss_pred H
Q 048394 308 G 308 (485)
Q Consensus 308 ~ 308 (485)
+
T Consensus 82 ~ 82 (84)
T PF12895_consen 82 E 82 (84)
T ss_dssp H
T ss_pred h
Confidence 3
No 170
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.98 E-value=0.00012 Score=52.36 Aligned_cols=80 Identities=9% Similarity=0.082 Sum_probs=61.1
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhCC--------CcccHHHHHHHHHHcCCCccHHHH
Q 048394 147 YGALLNCYCKELMTERALALFEKMDELKF-LGNTVAFNNLSTMYLRLG--------QPEKVRPLVNQMKQRNISLDNLTY 217 (485)
Q Consensus 147 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~p~~~~~ 217 (485)
-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666667888888889999998888 888889998888776643 233567778888888888888888
Q ss_pred HHHHHHHHh
Q 048394 218 IVWMQSYSH 226 (485)
Q Consensus 218 ~~l~~~~~~ 226 (485)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888876654
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.98 E-value=0.0023 Score=56.73 Aligned_cols=92 Identities=14% Similarity=0.135 Sum_probs=44.6
Q ss_pred HHHHhC-CCcccHHHHHHHHHHc----CCCcc--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhccC----CCCcHH-HHH
Q 048394 187 TMYLRL-GQPEKVRPLVNQMKQR----NISLD--NLTYIVWMQSYSHLNDIDGVERVFYEMCNECE----DKCRWT-TYS 254 (485)
Q Consensus 187 ~~~~~~-g~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~-~~~ 254 (485)
..|-.. |++++|++.|++..+. | .+. ...+..+...+.+.|++++|.++|+++..... ...+.. .+.
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 344444 6667777666665432 2 111 22344555666677777777777776654111 111121 222
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhc
Q 048394 255 NLASIYVKAELFEKAELALKKLEEM 279 (485)
Q Consensus 255 ~l~~~~~~~~~~~~A~~~~~~~~~~ 279 (485)
..+-++...||...|...+++....
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3333455556666666666666553
No 172
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.00082 Score=57.49 Aligned_cols=103 Identities=14% Similarity=0.079 Sum_probs=64.8
Q ss_pred cCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHHccCCCCHHh
Q 048394 279 MKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLN---AIDILKQCFEEWESRCSSYDMRL 355 (485)
Q Consensus 279 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~ 355 (485)
..|.|...|..|..+|...|+.+.|..-|....+..+++...+..+..++.... +..++..+|+++.+..+. |+..
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~ira 229 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRA 229 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHH
Confidence 556666777777777777777777777777666666666666665555554432 244566666666665444 5555
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 048394 356 ADVIIRAYLQKDMYEEAALIFNNAKKR 382 (485)
Q Consensus 356 ~~~l~~~~~~~~~~~~A~~~~~~~~~~ 382 (485)
...|...+...|++.+|...|+.|.+.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 555666666666666666666666665
No 173
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.93 E-value=0.015 Score=52.61 Aligned_cols=377 Identities=11% Similarity=0.057 Sum_probs=205.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHH
Q 048394 71 GKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGAL 150 (485)
Q Consensus 71 g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l 150 (485)
..|.|..+|..++.-+...+..++..+++++|..-- +.-...|...+..-...+++...+.+|.+......+...|...
T Consensus 37 dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~lY 115 (660)
T COG5107 37 DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPF-PIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWMLY 115 (660)
T ss_pred cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHHH
Confidence 346778899999999999999999999999986542 3445567777776667789999999999888755567777776
Q ss_pred HHHHHhcC-----cH-HHHHHHHHHHHh-CCCCCCh-hhHHHHHHHHH---hCC------CcccHHHHHHHHHHcCCCcc
Q 048394 151 LNCYCKEL-----MT-ERALALFEKMDE-LKFLGNT-VAFNNLSTMYL---RLG------QPEKVRPLVNQMKQRNISLD 213 (485)
Q Consensus 151 i~~~~~~~-----~~-~~A~~~~~~m~~-~~~~p~~-~~~~~l~~~~~---~~g------~~~~a~~~~~~~~~~~~~p~ 213 (485)
+.---+.+ +- ....+.|+-... .++.|-. ..|+..+...- ..| +.|.....|.+|+.--+..=
T Consensus 116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nl 195 (660)
T COG5107 116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNL 195 (660)
T ss_pred HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccH
Confidence 65443322 11 112223332222 3333322 23444333221 122 23344444544443211000
Q ss_pred HHHH------HHHHHHH-Hh--cC----CHhHHHHHHHHHHhc-----------------------------------c-
Q 048394 214 NLTY------IVWMQSY-SH--LN----DIDGVERVFYEMCNE-----------------------------------C- 244 (485)
Q Consensus 214 ~~~~------~~l~~~~-~~--~~----~~~~a~~~~~~~~~~-----------------------------------~- 244 (485)
...| ..=++.. ++ .| -+-.|.+.++++... .
T Consensus 196 eklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~ 275 (660)
T COG5107 196 EKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENG 275 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCC
Confidence 0000 0000000 00 00 011222222222110 0
Q ss_pred ---------------------CCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhH
Q 048394 245 ---------------------EDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAV 303 (485)
Q Consensus 245 ---------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 303 (485)
-.+....+|----.-+...+|-..|+..........| .....+...|.-.++-+.+
T Consensus 276 l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sp---sL~~~lse~yel~nd~e~v 352 (660)
T COG5107 276 LKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSP---SLTMFLSEYYELVNDEEAV 352 (660)
T ss_pred cccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCC---chheeHHHHHhhcccHHHH
Confidence 0111111111111122234555556555554322222 2222222333333333333
Q ss_pred HHHHHHhhh--------------cC----C------------CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcc-CCCC
Q 048394 304 NRVWGILKS--------------TF----P------------PTNTSYLVLLQALAKLNAIDILKQCFEEWESRC-SSYD 352 (485)
Q Consensus 304 ~~~~~~~~~--------------~~----~------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 352 (485)
...|+...+ .+ + .-..+|..+++...+..-++.|..+|.+..+.+ ..++
T Consensus 353 ~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~ 432 (660)
T COG5107 353 YGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHH 432 (660)
T ss_pred hhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcc
Confidence 332222110 00 1 012345556666667777888889999888887 6678
Q ss_pred HHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHH-HHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCcc--H
Q 048394 353 MRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSR-ESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPM--Q 429 (485)
Q Consensus 353 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~ 429 (485)
+.++++++..++. |+..-|..+|+--... -||...| +-.+..+..-++-..|..+|+..+.. +..+ .
T Consensus 433 vyi~~A~~E~~~~-~d~~ta~~ifelGl~~----f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-----~~~~q~k 502 (660)
T COG5107 433 VYIYCAFIEYYAT-GDRATAYNIFELGLLK----FPDSTLYKEKYLLFLIRINDEENARALFETSVER-----LEKTQLK 502 (660)
T ss_pred eeeeHHHHHHHhc-CCcchHHHHHHHHHHh----CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-----HHHhhhh
Confidence 8888888886664 7788888888765544 4555444 34455567788888888888877665 4444 5
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHhhcCCC
Q 048394 430 VTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCL 461 (485)
Q Consensus 430 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 461 (485)
.+|..+|..-..-|+...+..+-+++.+..|.
T Consensus 503 ~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 503 RIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 68888888888888888888888888887765
No 174
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.92 E-value=9.5e-05 Score=49.55 Aligned_cols=66 Identities=12% Similarity=-0.017 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcC-ChhhHHHHHHHHhhcCC
Q 048394 390 FKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEK-DVDGAEEFCKVLKSLNC 460 (485)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~ 460 (485)
...|..+...+...|++++|+..|++.++. .+.+...|..+..++...| ++++|.+.++++++..|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~-----~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL-----DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-----STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456777777888888888888888888887 4456677788888888888 68888888888887765
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.90 E-value=0.00068 Score=64.95 Aligned_cols=137 Identities=12% Similarity=0.009 Sum_probs=63.7
Q ss_pred cCCCChHHHHHHHHHHHhcC-----ChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcC--------ChhHHHHHHHHHH
Q 048394 279 MKPRDRKAYHFLISLYCNTS-----NLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLN--------AIDILKQCFEEWE 345 (485)
Q Consensus 279 ~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~ 345 (485)
..|.+..+|...+++..... +...|..+|++..+..|.....+..+..++.... ++..+.+......
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34455666666666543322 2446666666666666665555544433332211 1112222222211
Q ss_pred Hc-cCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 048394 346 SR-CSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSE 419 (485)
Q Consensus 346 ~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 419 (485)
.. ....+...|.++.-.....|++++|...++++.+. .|+...|..+...+...|+.++|.+.+++....
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L----~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL----EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 11 01112344444444444445555555555555554 344445555555555555555555555555543
No 176
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.90 E-value=1.8e-05 Score=43.24 Aligned_cols=29 Identities=41% Similarity=0.665 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhCC
Q 048394 146 TYGALLNCYCKELMTERALALFEKMDELK 174 (485)
Q Consensus 146 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 174 (485)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666554
No 177
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.89 E-value=0.00082 Score=54.67 Aligned_cols=81 Identities=7% Similarity=-0.019 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 048394 253 YSNLASIYVKAELFEKAELALKKLEEMKP--R-DRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALA 329 (485)
Q Consensus 253 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 329 (485)
+..+...+...|++++|...|++..+..+ + ....+..+...+.+.|++++|...+.+.....+.+...+..+...+.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 33444444444444444444444443211 1 12344444444444444444444444444444334444444444444
Q ss_pred hcCC
Q 048394 330 KLNA 333 (485)
Q Consensus 330 ~~~~ 333 (485)
..|+
T Consensus 118 ~~g~ 121 (172)
T PRK02603 118 KRGE 121 (172)
T ss_pred HcCC
Confidence 4444
No 178
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.89 E-value=0.0024 Score=53.40 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=32.6
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC
Q 048394 256 LASIYVKAELFEKAELALKKLEEMKP---RDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP 316 (485)
Q Consensus 256 l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 316 (485)
.+..+...|++++|...|+.+....| --..+...++.++.+.|+++.|...+++..+..|.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 44445556666666666666665332 22344455556666666666666666666655555
No 179
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.89 E-value=0.00079 Score=54.57 Aligned_cols=102 Identities=14% Similarity=-0.053 Sum_probs=57.0
Q ss_pred HHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCC--chhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHH
Q 048394 353 MRLADVIIRAYLQKDMYEEAALIFNNAKKRANASAR--FFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQV 430 (485)
Q Consensus 353 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 430 (485)
...|..++..+...|++++|...|++...... .| ...++..+...+...|++++|+..+++.... .+....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~--~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~-----~~~~~~ 107 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI--DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER-----NPFLPQ 107 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCcHH
Confidence 34455555666666777777777776665422 21 1235566666666777777777777776654 223334
Q ss_pred HHHHHHHHHh-------hcCChh-------hHHHHHHHHhhcCCC
Q 048394 431 TVDTFFRFFE-------EEKDVD-------GAEEFCKVLKSLNCL 461 (485)
Q Consensus 431 ~~~~l~~~~~-------~~~~~~-------~A~~~~~~~~~~~~~ 461 (485)
.+..+...+. ..|+++ +|..++++.....|+
T Consensus 108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 4444444444 566655 444444455555554
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.89 E-value=0.0012 Score=63.28 Aligned_cols=142 Identities=12% Similarity=0.018 Sum_probs=103.8
Q ss_pred CCCChhhHHHHHHHHHhc-----CChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhc--------CcHHHHHHHHHHHH
Q 048394 314 FPPTNTSYLVLLQALAKL-----NAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQK--------DMYEEAALIFNNAK 380 (485)
Q Consensus 314 ~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~~~ 380 (485)
.+.+...|...+.+.... ++.+.|..+|++..+..+. ....|..+..++... .+...+.+...+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 334888888888876543 2377899999999998655 455555554444322 12344555555544
Q ss_pred hcc-cccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcC
Q 048394 381 KRA-NASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLN 459 (485)
Q Consensus 381 ~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 459 (485)
... . ..+...|..+.-.....|++++|...++++++.. |+...|..+...+...|+.++|...++++..++
T Consensus 412 al~~~--~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~------ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 412 ALPEL--NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE------MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hcccC--cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 431 2 3455677777666677899999999999999964 788899999999999999999999999999999
Q ss_pred CCCHH
Q 048394 460 CLDFS 464 (485)
Q Consensus 460 ~~~~~ 464 (485)
|.++.
T Consensus 484 P~~pt 488 (517)
T PRK10153 484 PGENT 488 (517)
T ss_pred CCCch
Confidence 97663
No 181
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.88 E-value=0.0048 Score=51.66 Aligned_cols=56 Identities=13% Similarity=0.156 Sum_probs=23.9
Q ss_pred HHHHhcCChhhHHHHHHHhhhcCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 048394 292 SLYCNTSNLDAVNRVWGILKSTFPP---TNTSYLVLLQALAKLNAIDILKQCFEEWESR 347 (485)
Q Consensus 292 ~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 347 (485)
..+...|++++|...|+.+....|. ...+...++.++.+.|+++.|...++...+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344444555555555544444333 2233334444444445555555555444443
No 182
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.87 E-value=0.00035 Score=64.12 Aligned_cols=123 Identities=14% Similarity=0.091 Sum_probs=76.5
Q ss_pred cCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHh
Q 048394 279 MKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP---TNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRL 355 (485)
Q Consensus 279 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 355 (485)
..+-+......+++.+....+.+.+..++-+.+..... -..+..++++.|.+.|..+.+..+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33445556666666666666666666666666554222 344555667777777777777777776666677777777
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhc
Q 048394 356 ADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRS 403 (485)
Q Consensus 356 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 403 (485)
+|.|++.+.+.|++..|.++...|...+. ..+..|+..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~--~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEE--FDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHHh
Confidence 77777777777777777777666665554 45555555545444443
No 183
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.86 E-value=0.0003 Score=57.04 Aligned_cols=61 Identities=20% Similarity=0.279 Sum_probs=44.8
Q ss_pred HHHHHhhcccCCCHhHHHHHHHHHHh-----cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 048394 131 EKYFNGLSEYAKNRYTYGALLNCYCK-----ELMTERALALFEKMDELKFLGNTVAFNNLSTMYLR 191 (485)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 191 (485)
...|+.......|..+|..++..|.+ .|.++=....+..|.+-|+.-|..+|+.|++.+=+
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 34455543344577777777777764 47788888888889999988899999999888754
No 184
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.86 E-value=0.013 Score=52.43 Aligned_cols=279 Identities=13% Similarity=0.041 Sum_probs=150.9
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhC
Q 048394 113 DFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRL 192 (485)
Q Consensus 113 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 192 (485)
+|..+.......|+.+-|..+++.=+ +..- =+-.+.+.|+.+.| +.+..+.|- ||. +|..++..--+.
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~Ep----~~~~---qVplLL~m~e~e~A---L~kAi~SgD-~DL-i~~vLl~L~~~l 69 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLELEP----RASK---QVPLLLKMGEDELA---LNKAIESGD-TDL-IYLVLLHLKRKL 69 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHcCC----ChHH---HHHHHhcCCchHHH---HHHHHHcCC-ccH-HHHHHHHHHHhC
Confidence 35566666677888888887766443 2221 14445667777776 334455441 232 455555433322
Q ss_pred CCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHH
Q 048394 193 GQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELA 272 (485)
Q Consensus 193 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 272 (485)
. .-+++. +... .|.. ..+...|++..+.+.-..+|.+--+ ........+-.++. ..+.+.-...
T Consensus 70 ~----~s~f~~-il~~--~p~a---~~l~~~~~r~~~~~~L~~~y~q~d~-----~~~~a~~~l~~~~~-~~~~~~~~~~ 133 (319)
T PF04840_consen 70 S----LSQFFK-ILNQ--NPVA---SNLYKKYCREQDRELLKDFYYQEDR-----FQELANLHLQEALS-QKDVEEKISF 133 (319)
T ss_pred C----HHHHHH-HHHh--Ccch---HHHHHHHHHhccHHHHHHHHHhcch-----HHHHHHHHHHHHHh-CCChHHHHHH
Confidence 2 113333 3322 2332 2345556666666665555543221 11122222223322 2444444444
Q ss_pred HHHHHh--cCCCChHHHHHHHHHHHhcCChhhHHHHHH---Hhhhc-CCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 048394 273 LKKLEE--MKPRDRKAYHFLISLYCNTSNLDAVNRVWG---ILKST-FPP-TNTSYLVLLQALAKLNAIDILKQCFEEWE 345 (485)
Q Consensus 273 ~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 345 (485)
+..+.+ ....+......++. +-.++++ .+... +.. ...+.+..+.-+...|+...|.++-.+.
T Consensus 134 L~~a~~~y~~~k~~~f~~~~~e---------~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~F- 203 (319)
T PF04840_consen 134 LKQAQKLYSKSKNDAFEAKLIE---------EQIKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEF- 203 (319)
T ss_pred HHHHHHHHHhcchhHHHHHHHH---------HHHHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHHc-
Confidence 444444 11112111122211 1122222 11111 111 3345566677777888887777775554
Q ss_pred HccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCC
Q 048394 346 SRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHW 425 (485)
Q Consensus 346 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 425 (485)
--|+...|...+.+++..++|++-..+... .-.+.-|..++..|.+.|+..+|..++.++..
T Consensus 204 ---kv~dkrfw~lki~aLa~~~~w~eL~~fa~s--------kKsPIGyepFv~~~~~~~~~~eA~~yI~k~~~------- 265 (319)
T PF04840_consen 204 ---KVPDKRFWWLKIKALAENKDWDELEKFAKS--------KKSPIGYEPFVEACLKYGNKKEASKYIPKIPD------- 265 (319)
T ss_pred ---CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--------CCCCCChHHHHHHHHHCCCHHHHHHHHHhCCh-------
Confidence 235888888899999999999887776432 12237788899999999999999888877322
Q ss_pred CccHHHHHHHHHHHhhcCChhhHHHHHHH
Q 048394 426 RPMQVTVDTFFRFFEEEKDVDGAEEFCKV 454 (485)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 454 (485)
..-+..|.+.|++.+|.+..-+
T Consensus 266 -------~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 266 -------EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred -------HHHHHHHHHCCCHHHHHHHHHH
Confidence 2345667788999888766544
No 185
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.85 E-value=0.00044 Score=56.06 Aligned_cols=26 Identities=19% Similarity=-0.042 Sum_probs=10.8
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHh
Q 048394 253 YSNLASIYVKAELFEKAELALKKLEE 278 (485)
Q Consensus 253 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 278 (485)
+..+..+|...|++++|...+++...
T Consensus 75 ~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 75 LYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 186
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.85 E-value=0.00022 Score=63.04 Aligned_cols=282 Identities=11% Similarity=0.044 Sum_probs=140.8
Q ss_pred HHHhCCCcccHHHHHHHHHHcCCC---ccHHHHHHHHHHHHhcCCHhHHHHHHHHHHh---ccCC-CCcHHHHHHHHHHH
Q 048394 188 MYLRLGQPEKVRPLVNQMKQRNIS---LDNLTYIVWMQSYSHLNDIDGVERVFYEMCN---ECED-KCRWTTYSNLASIY 260 (485)
Q Consensus 188 ~~~~~g~~~~a~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~-~~~~~~~~~l~~~~ 260 (485)
-+++.|+......+|+...+.|.. .=..+|..|.++|.-.+++++|+++...=.. .-+. .-....-..|.+.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 367888888888888888887632 1233456666777777788888776542111 0011 11122223355666
Q ss_pred HhcccHHHHHHHHHHHHh----cC--CCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCCh
Q 048394 261 VKAELFEKAELALKKLEE----MK--PRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAI 334 (485)
Q Consensus 261 ~~~~~~~~A~~~~~~~~~----~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 334 (485)
--.|.+++|.....+-.. .. .....++..+...|...|+.-... ++.+...++.=+ ...+
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~---------~pee~g~f~~ev-----~~al 171 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE---------APEEKGAFNAEV-----TSAL 171 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC---------ChhhcccccHHH-----HHHH
Confidence 666777777654433222 11 123344555555555544321100 000000000000 0012
Q ss_pred hHHHHHHHHHHH----ccCC-CCHHhHHHHHHHHHhcCcHHHHHHHHHHHH----hcccccCCchhHHHHHHHHHHhccc
Q 048394 335 DILKQCFEEWES----RCSS-YDMRLADVIIRAYLQKDMYEEAALIFNNAK----KRANASARFFKSRESFMIYYLRSRQ 405 (485)
Q Consensus 335 ~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~p~~~~~~~l~~~~~~~g~ 405 (485)
+.|.++|.+=.+ .|-. .-...|..|...|.-.|+++.|+...+.-. +.|-. ......+..+..++.-.|+
T Consensus 172 ~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDr-AaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 172 ENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDR-AAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhH-HHHHHhhcccchhhhhhcc
Confidence 223333332111 1100 012344445555555667777765543322 11210 1122345566667777777
Q ss_pred HHHHHHHHHHHHHHhhhcCC-CccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcC------CCCHHHHHHHHHHHHHhCC
Q 048394 406 LDLALNEMEAALSEAKQFHW-RPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLN------CLDFSAYSLLIKTYIAAGK 478 (485)
Q Consensus 406 ~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~ 478 (485)
++.|.+.|+.......+.+. ........+|...|.-..+++.|+.++.+-+... .....++.+|+++|...|.
T Consensus 251 fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~ 330 (639)
T KOG1130|consen 251 FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE 330 (639)
T ss_pred cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Confidence 77777777766544322111 1233444556666666677777777766654432 1245667777888877777
Q ss_pred Ccchhc
Q 048394 479 LASDMR 484 (485)
Q Consensus 479 ~~~A~~ 484 (485)
.++|+.
T Consensus 331 h~kAl~ 336 (639)
T KOG1130|consen 331 HRKALY 336 (639)
T ss_pred HHHHHH
Confidence 777763
No 187
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.82 E-value=0.021 Score=50.73 Aligned_cols=216 Identities=12% Similarity=-0.019 Sum_probs=101.1
Q ss_pred hcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHh--cCCCChH--HHHHHHHHHH---hcC
Q 048394 226 HLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEE--MKPRDRK--AYHFLISLYC---NTS 298 (485)
Q Consensus 226 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~--~~~~l~~~~~---~~~ 298 (485)
+.|+.+.|.++-+..-. .-+.-.......+...+..|+++.|+++++.-.. ...++.. .-..|+.+-. -..
T Consensus 166 r~GareaAr~yAe~Aa~--~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 166 RLGAREAARHYAERAAE--KAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred hcccHHHHHHHHHHHHh--hccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 44555555555554443 2233333344455555555555555555555443 1111111 0111111110 112
Q ss_pred ChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHH
Q 048394 299 NLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNN 378 (485)
Q Consensus 299 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 378 (485)
+...|...-.+..+..+.-...-..-..++.+.|+..++-.+++.+-+..++|+.. .+..+.+.|+ .+..-+++
T Consensus 244 dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~dRlkR 317 (531)
T COG3898 244 DPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TALDRLKR 317 (531)
T ss_pred ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHHHHHHH
Confidence 33444444444444444433333344556666777777777777776665554421 1122334443 23333333
Q ss_pred HHhc-ccccCC-chhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHh-hcCChhhHHHHHHHH
Q 048394 379 AKKR-ANASAR-FFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFE-EEKDVDGAEEFCKVL 455 (485)
Q Consensus 379 ~~~~-~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~ 455 (485)
.... .. +| +..+...+..+-...|++..|..--+..... .|....|..+...-. ..||-.++..++.+.
T Consensus 318 a~~L~sl--k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~------~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 318 AKKLESL--KPNNAESSLAVAEAALDAGEFSAARAKAEAAARE------APRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHhc--CccchHHHHHHHHHHHhccchHHHHHHHHHHhhh------CchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 2221 11 22 2334445555566667776666655555543 366666666655433 336777777666666
Q ss_pred hh
Q 048394 456 KS 457 (485)
Q Consensus 456 ~~ 457 (485)
++
T Consensus 390 v~ 391 (531)
T COG3898 390 VK 391 (531)
T ss_pred hc
Confidence 55
No 188
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.82 E-value=0.00064 Score=58.84 Aligned_cols=106 Identities=10% Similarity=-0.057 Sum_probs=78.5
Q ss_pred HhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCch----hHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccH
Q 048394 354 RLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFF----KSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQ 429 (485)
Q Consensus 354 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 429 (485)
..|...+..+.+.|++++|...|+.+++. .|+. ..+-.+...|...|++++|...|+.+.+..+ +.+...
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~----yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP--~s~~~~ 217 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK----YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP--KSPKAA 217 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CCcchh
Confidence 34555555556678999999999998887 4443 4566788888999999999999999988731 112234
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHH
Q 048394 430 VTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSA 465 (485)
Q Consensus 430 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 465 (485)
..+..+...+...|+.+.|.++|+.+.+..|.+..+
T Consensus 218 dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 218 DAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 555556677888899999999999999988876544
No 189
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.81 E-value=0.0004 Score=59.06 Aligned_cols=93 Identities=18% Similarity=0.143 Sum_probs=61.4
Q ss_pred HHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhH
Q 048394 224 YSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAV 303 (485)
Q Consensus 224 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 303 (485)
..+.+++.+|+..|.+.++ -.|-|...|..-..+|++.|.++.|++-.+.....+|....+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3455666667777766666 45556666666666677777777776666666666666666677777777777777777
Q ss_pred HHHHHHhhhcCCCCh
Q 048394 304 NRVWGILKSTFPPTN 318 (485)
Q Consensus 304 ~~~~~~~~~~~~~~~ 318 (485)
.+.|++..+..|.+.
T Consensus 169 ~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 169 IEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHhhhccCCCcH
Confidence 666666666655544
No 190
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.79 E-value=2.3e-05 Score=42.74 Aligned_cols=29 Identities=28% Similarity=0.572 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhCCCcccHHHHHHHHHHcC
Q 048394 181 AFNNLSTMYLRLGQPEKVRPLVNQMKQRN 209 (485)
Q Consensus 181 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 209 (485)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 57777777777777777777777776665
No 191
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.79 E-value=0.00048 Score=49.33 Aligned_cols=79 Identities=4% Similarity=0.075 Sum_probs=63.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHccC-CCCHHhHHHHHHHHHhcC--------cHHHHHHHHHHHHhcccccCCchhH
Q 048394 322 LVLLQALAKLNAIDILKQCFEEWESRCS-SYDMRLADVIIRAYLQKD--------MYEEAALIFNNAKKRANASARFFKS 392 (485)
Q Consensus 322 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~~~~~~p~~~~ 392 (485)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|+..++ +|+..+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~l--KP~~et 106 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKL--KPNDET 106 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhcc--CCcHHH
Confidence 4456666677888888899999999888 888999998888877542 35567788899988888 999999
Q ss_pred HHHHHHHHHh
Q 048394 393 RESFMIYYLR 402 (485)
Q Consensus 393 ~~~l~~~~~~ 402 (485)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998887754
No 192
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.79 E-value=0.023 Score=50.41 Aligned_cols=282 Identities=12% Similarity=-0.001 Sum_probs=181.5
Q ss_pred hhCCHHHHHHHHHhhcc-cCCCHhHHHHHHHH--HHhcCcHHHHHHHHHHHHhCCCCCChhhH----HHHHHHHHhCCCc
Q 048394 123 KTNGIAAAEKYFNGLSE-YAKNRYTYGALLNC--YCKELMTERALALFEKMDELKFLGNTVAF----NNLSTMYLRLGQP 195 (485)
Q Consensus 123 ~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~--~~~~~~~~~A~~~~~~m~~~~~~p~~~~~----~~l~~~~~~~g~~ 195 (485)
-.|+-..|.++-.+..+ ..-|....-.|+.+ -.-.|+++.|.+-|+.|.. |+.+- ..|.-...+.|+.
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccH
Confidence 35777788877776654 44454444444433 3346899999999999886 33332 3333334567888
Q ss_pred ccHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHH--HHHHHHHH---hcccHHHH
Q 048394 196 EKVRPLVNQMKQRNISLD-NLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTY--SNLASIYV---KAELFEKA 269 (485)
Q Consensus 196 ~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~---~~~~~~~A 269 (485)
+.|.++-+..-.. .|. .-.+...+...+..|+++.|+++++.-....-+.++..-- ..|+.+-. -..|...|
T Consensus 171 eaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~A 248 (531)
T COG3898 171 EAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASA 248 (531)
T ss_pred HHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHH
Confidence 8888877776554 233 3456778888889999999999988776644444443321 11222111 12356677
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc-c
Q 048394 270 ELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESR-C 348 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~ 348 (485)
...-.+..+..|.-...-..-..++.+.|+..++-.+++.+-+..|... +...|.....-|.++.-++...+. .
T Consensus 249 r~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~-----ia~lY~~ar~gdta~dRlkRa~~L~s 323 (531)
T COG3898 249 RDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD-----IALLYVRARSGDTALDRLKRAKKLES 323 (531)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH-----HHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 7776666666665566666778889999999999999999887766521 223333333333344444433221 1
Q ss_pred CCC-CHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHH-hcccHHHHHHHHHHHHHHh
Q 048394 349 SSY-DMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYL-RSRQLDLALNEMEAALSEA 420 (485)
Q Consensus 349 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~ 420 (485)
.+| +......+..+-...|++..|..--+..... .|....|..|.+.-. ..|+-.++..++.+.+..-
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~----~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE----APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh----CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 222 5666667778888889998888777766655 777777877766554 4599999999999888764
No 193
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.77 E-value=0.00015 Score=47.82 Aligned_cols=57 Identities=11% Similarity=0.101 Sum_probs=27.2
Q ss_pred HHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcC
Q 048394 258 SIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTF 314 (485)
Q Consensus 258 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 314 (485)
..+.+.|++++|...|+++.+..|.+...+..+..++...|++++|...|+++.+..
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 344444555555555555544444444445555555555555555555554444433
No 194
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.73 E-value=0.036 Score=53.00 Aligned_cols=253 Identities=9% Similarity=0.067 Sum_probs=154.2
Q ss_pred HHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhC-CCCCChhhHHHH-------HHHHHhCCCcccH
Q 048394 127 IAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDEL-KFLGNTVAFNNL-------STMYLRLGQPEKV 198 (485)
Q Consensus 127 ~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~l-------~~~~~~~g~~~~a 198 (485)
+++|.++.+ ..|.+..|..|.......-.++-|+..|-+...- |++. +.-...+ ...-.--|++++|
T Consensus 679 ledA~qfiE----dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~-vkrl~~i~s~~~q~aei~~~~g~feea 753 (1189)
T KOG2041|consen 679 LEDAIQFIE----DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKL-VKRLRTIHSKEQQRAEISAFYGEFEEA 753 (1189)
T ss_pred hHHHHHHHh----cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhH-HHHhhhhhhHHHHhHhHhhhhcchhHh
Confidence 444444433 3477888988888877777888888877665432 2220 0011111 1112234788999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 048394 199 RPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEE 278 (485)
Q Consensus 199 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 278 (485)
.++|-+|-.++ ..+..+.+.|++-...++++.-..+.....-...++.+...+.....++.|.+.+..-..
T Consensus 754 ek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 754 EKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred hhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 98887776653 246677788888877776654322122223345678888888888888888888866321
Q ss_pred cCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHH
Q 048394 279 MKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADV 358 (485)
Q Consensus 279 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 358 (485)
....++++.+..++++-+.+.+.+ +.+....-.+..++...|.-++|.+.|-+-.. | .+
T Consensus 825 --------~e~~~ecly~le~f~~LE~la~~L----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----ka 883 (1189)
T KOG2041|consen 825 --------TENQIECLYRLELFGELEVLARTL----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KA 883 (1189)
T ss_pred --------hHhHHHHHHHHHhhhhHHHHHHhc----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HH
Confidence 224566666666666655554443 44667777788888888888888776654321 1 23
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHH--------------HHHHHHHHhcccHHHHHHHHHHHHHHh
Q 048394 359 IIRAYLQKDMYEEAALIFNNAKKRANASARFFKSR--------------ESFMIYYLRSRQLDLALNEMEAALSEA 420 (485)
Q Consensus 359 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~--------------~~l~~~~~~~g~~~~A~~~~~~~~~~~ 420 (485)
.+..|...++|.+|.++-++.. -|...+. .--|..+.+.|..-.|.+++.+|.+..
T Consensus 884 Av~tCv~LnQW~~avelaq~~~------l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e 953 (1189)
T KOG2041|consen 884 AVHTCVELNQWGEAVELAQRFQ------LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAERE 953 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc------chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHH
Confidence 4566777778888877765543 1221221 112344566777777777777776653
No 195
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.70 E-value=0.00024 Score=47.60 Aligned_cols=62 Identities=21% Similarity=0.267 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC-ChhhHHHHHHHhhh
Q 048394 251 TTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTS-NLDAVNRVWGILKS 312 (485)
Q Consensus 251 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 312 (485)
.+|..+...+...|++++|+..|++..+..|.+...|..+..++...| ++++|...+++..+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555555 45555555555443
No 196
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.003 Score=54.14 Aligned_cols=105 Identities=9% Similarity=-0.030 Sum_probs=88.8
Q ss_pred CCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC---ChhhHHHHHHHhhhcCCCChhhH
Q 048394 245 EDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTS---NLDAVNRVWGILKSTFPPTNTSY 321 (485)
Q Consensus 245 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~ 321 (485)
..|-|...|-.|...|...|+++.|...|.+..+..++++..+..+..++.... ...++..+|+++....+.+..+.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 577788888889999999999999999999999988888888888888876544 33578889999998888888888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHccC
Q 048394 322 LVLLQALAKLNAIDILKQCFEEWESRCS 349 (485)
Q Consensus 322 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 349 (485)
..|...+...|++.+|...|+.|.+..+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 8889999999999999999999988743
No 197
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.68 E-value=0.00022 Score=47.59 Aligned_cols=55 Identities=20% Similarity=0.227 Sum_probs=28.3
Q ss_pred hcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC
Q 048394 262 KAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP 316 (485)
Q Consensus 262 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 316 (485)
+.|++++|...|+++....|.+...+..++.+|.+.|++++|..+++++....+.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3455555555555555555545555555555555555555555555555444443
No 198
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.65 E-value=0.045 Score=49.75 Aligned_cols=49 Identities=12% Similarity=-0.025 Sum_probs=31.7
Q ss_pred HhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 048394 401 LRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVL 455 (485)
Q Consensus 401 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 455 (485)
...|++.++.-.-....+ +.|++.+|..+.-++...+++++|..++..+
T Consensus 473 ysqgey~kc~~ys~WL~~------iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLTK------IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HhcccHHHHHHHHHHHHH------hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 356666666544444443 4577777777777777777777777776654
No 199
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.078 Score=51.30 Aligned_cols=139 Identities=13% Similarity=0.035 Sum_probs=89.7
Q ss_pred HhCCCCCHHHHHH-----HHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCC---HHHHHHHHHhhccc
Q 048394 69 MEGKTVRKDMLEY-----CVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNG---IAAAEKYFNGLSEY 140 (485)
Q Consensus 69 ~~g~~~~~~~~~~-----l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~ 140 (485)
+-|++.+...|.. ++..+...+.+..|+++-.++...-..- ...|......+.+..+ -+.+..+-+++...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4588888887766 4778888999999999999885433222 5667776766665532 22223333333321
Q ss_pred CCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC----CChhhHHHHHHHHHhCCCcccHHHHHHHHHHc
Q 048394 141 AKNRYTYGALLNCYCKELMTERALALFEKMDELKFL----GNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQR 208 (485)
Q Consensus 141 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 208 (485)
.-...+|..+.......|+.+-|..+++.=...+.. .+..-+...+.-+...|+.+-...++-.+..+
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~ 575 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK 575 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 134457888888788899999999988654332211 12223455666677788888888777776653
No 200
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.60 E-value=0.001 Score=49.54 Aligned_cols=104 Identities=16% Similarity=0.004 Sum_probs=66.6
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcccccCCch---hHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCc---cHHHH
Q 048394 359 IIRAYLQKDMYEEAALIFNNAKKRANASARFF---KSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRP---MQVTV 432 (485)
Q Consensus 359 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~ 432 (485)
+..++-..|+.++|..+|++..+.| -++. ..+..+...+...|++++|..++++..... +. +....
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~g---L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~~~~~~l~ 78 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAG---LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDDELNAALR 78 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC---CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHH
Confidence 5566777888888888888888764 4443 234455667778888888888888887763 22 22233
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 048394 433 DTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTY 473 (485)
Q Consensus 433 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 473 (485)
..+..++...|+.++|.+.+-..... +...|.--+..|
T Consensus 79 ~f~Al~L~~~gr~~eAl~~~l~~la~---~~~~y~ra~~~y 116 (120)
T PF12688_consen 79 VFLALALYNLGRPKEALEWLLEALAE---TLPRYRRAIRFY 116 (120)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 33345677788888888877655442 222444444444
No 201
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.59 E-value=0.0048 Score=46.03 Aligned_cols=108 Identities=9% Similarity=-0.045 Sum_probs=73.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCC----HhHHHHHHH
Q 048394 79 LEYCVRSLRKFGRYRHALEVIEWMESRKMHFS--YTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKN----RYTYGALLN 152 (485)
Q Consensus 79 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~li~ 152 (485)
......++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+|++.....|+ ......+..
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 34556667788999999999999888875443 234555667788889999999999887774344 222233344
Q ss_pred HHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 048394 153 CYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYL 190 (485)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 190 (485)
++...|+.++|+..+-.... ++...|.--|..|.
T Consensus 84 ~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 56778888888888766554 23345665555554
No 202
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.56 E-value=0.086 Score=50.59 Aligned_cols=122 Identities=11% Similarity=-0.014 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-CCCCCC--------hhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCC
Q 048394 73 TVRKDMLEYCVRSLRKFGRYRHALEVIEWMES-RKMHFS--------YTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKN 143 (485)
Q Consensus 73 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~--------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 143 (485)
.|.+..+..+.......-.++-|...|-+... .|++.- ...-.+=+. +--|.+++|++++-.+.. .|
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~dr--rD 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADR--RD 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccch--hh
Confidence 46666666666665555566666665554422 122110 000011111 123667777777666544 11
Q ss_pred HhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhCCCcccHHHHHHH
Q 048394 144 RYTYGALLNCYCKELMTERALALFEKMDELKFL--GNTVAFNNLSTMYLRLGQPEKVRPLVNQ 204 (485)
Q Consensus 144 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 204 (485)
..|..+.+.|++-...++++.--. +.. .-..+|+.+...+.....|++|.+.|..
T Consensus 765 -----LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 765 -----LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred -----hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 223444455555555544432100 000 0123455555555555555555555543
No 203
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.55 E-value=0.00067 Score=45.96 Aligned_cols=66 Identities=21% Similarity=0.004 Sum_probs=53.5
Q ss_pred HHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHH
Q 048394 398 IYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSL 468 (485)
Q Consensus 398 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 468 (485)
..|.+.+++++|++++++++.. .+.+...+.....++...|++++|.+.++.+.+..|.++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL-----DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh-----CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 4678889999999999999887 45567777778888899999999999999999888877655443
No 204
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.50 E-value=0.031 Score=44.26 Aligned_cols=130 Identities=15% Similarity=0.034 Sum_probs=73.5
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcc---CCCCHHhHHH
Q 048394 283 DRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP-TNTSYLVLLQALAKLNAIDILKQCFEEWESRC---SSYDMRLADV 358 (485)
Q Consensus 283 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ 358 (485)
....-..|..+....|+..+|...|.+....-.. |......+.++....++...|...++++-+.. -.|| +.-.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~Ll 165 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHLL 165 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chHH
Confidence 4444455666666666666666666666555444 66666666666666666666666666665543 1222 2233
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 048394 359 IIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALS 418 (485)
Q Consensus 359 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 418 (485)
+.+.|...|.+++|+.-|+..... .|+...-......+.+.|+.+++..-+..+.+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~----ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY----YPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh----CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 556666666666666666666654 44444333333444556655555544444433
No 205
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.50 E-value=0.0051 Score=54.73 Aligned_cols=135 Identities=10% Similarity=-0.041 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHhh----hcCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHH----ccCC-CC
Q 048394 284 RKAYHFLISLYCNTSNLDAVNRVWGILK----STFPP--TNTSYLVLLQALAKLNAIDILKQCFEEWES----RCSS-YD 352 (485)
Q Consensus 284 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~ 352 (485)
...|..|...|.-.|+++.|+...+.-. +-|-. ...++..+.+++.-.|+++.|.+.|+.... .|-. ..
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 3456667777777888888887655322 22322 456788889999999999999998886533 2211 12
Q ss_pred HHhHHHHHHHHHhcCcHHHHHHHHHHHHhc-----ccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Q 048394 353 MRLADVIIRAYLQKDMYEEAALIFNNAKKR-----ANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEA 420 (485)
Q Consensus 353 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 420 (485)
..+.-+|...|.-..++++|+.++.+-... +. .-....+.+|..+|...|..++|+.+.+..++..
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~Dr--iGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDR--IGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 445556888888888899999888765431 11 2234567788889999999999998887776654
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.50 E-value=0.0027 Score=55.02 Aligned_cols=98 Identities=9% Similarity=0.055 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCc---HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC---ChHHHHHH
Q 048394 217 YIVWMQSYSHLNDIDGVERVFYEMCNECEDKCR---WTTYSNLASIYVKAELFEKAELALKKLEEMKPR---DRKAYHFL 290 (485)
Q Consensus 217 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l 290 (485)
|...+....+.|++++|...|+.+.+ ..|-+ ...+..++.+|...|++++|...|+.+.+..|. ...++..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 33333333444556666655555555 11111 234444555555555555555555555543332 23333334
Q ss_pred HHHHHhcCChhhHHHHHHHhhhcCCC
Q 048394 291 ISLYCNTSNLDAVNRVWGILKSTFPP 316 (485)
Q Consensus 291 ~~~~~~~~~~~~a~~~~~~~~~~~~~ 316 (485)
..++...|+.++|..+|+.+.+..|.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 44455555555555555555544444
No 207
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.49 E-value=0.033 Score=44.13 Aligned_cols=124 Identities=14% Similarity=0.052 Sum_probs=59.2
Q ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC--ChhhHHHH
Q 048394 248 CRWTTYSNLASIYVKAELFEKAELALKKLEE-MKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP--TNTSYLVL 324 (485)
Q Consensus 248 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l 324 (485)
|+...-..|..++...|++.+|...|.+... ....|......+.++....++...|...++.+.+..+. ++.+...+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 3333333455555555555555555555444 22334444455555555555555555555555444433 44444455
Q ss_pred HHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHH
Q 048394 325 LQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAA 373 (485)
Q Consensus 325 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 373 (485)
...+...|..++|+.-|+.....-+.|....+ ....+.++|+.+++.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~--Y~e~La~qgr~~ea~ 213 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGPQARIY--YAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcchhHHH
Confidence 55555555555555555555554333222222 223344455444443
No 208
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.45 E-value=0.043 Score=49.62 Aligned_cols=35 Identities=14% Similarity=-0.084 Sum_probs=26.4
Q ss_pred ccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCC
Q 048394 427 PMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCL 461 (485)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 461 (485)
.+.-.+.+++.++.-.||++.|.+.++++....|+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 34445567778888888888888888888887665
No 209
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.43 E-value=0.00015 Score=40.18 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=30.7
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhCCCcchhc
Q 048394 452 CKVLKSLNCLDFSAYSLLIKTYIAAGKLASDMR 484 (485)
Q Consensus 452 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 484 (485)
|+++++..|.++.+|+.|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678899999999999999999999999999974
No 210
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.40 E-value=0.063 Score=45.28 Aligned_cols=181 Identities=17% Similarity=0.145 Sum_probs=100.4
Q ss_pred HHhcccHHHHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC-ChhhHHHHHHHHHhcC---
Q 048394 260 YVKAELFEKAELALKKLEEMKP---RDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP-TNTSYLVLLQALAKLN--- 332 (485)
Q Consensus 260 ~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~--- 332 (485)
-.+.|++++|.+.|+.+....| -...+...++.++.+.++++.|....++.....|. ....|...+.+++.--
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 3466777777777777776333 33455566666777777777777777777777666 5555555555555211
Q ss_pred ----Chh---HHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhccc
Q 048394 333 ----AID---ILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQ 405 (485)
Q Consensus 333 ----~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 405 (485)
|.. .|..-|+++++. |=...=...|..-...+...=- ..=..+.+.|.+.|.
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~r---------------yPnS~Ya~dA~~~i~~~~d~LA------~~Em~IaryY~kr~~ 182 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQR---------------YPNSRYAPDAKARIVKLNDALA------GHEMAIARYYLKRGA 182 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHH---------------CCCCcchhhHHHHHHHHHHHHH------HHHHHHHHHHHHhcC
Confidence 111 122222222222 1111111222222211111100 001234567888999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCH
Q 048394 406 LDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDF 463 (485)
Q Consensus 406 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 463 (485)
+..|..-+++|++.- +..+-....+-.+..+|...|-.++|.+.-+-+....|.++
T Consensus 183 ~~AA~nR~~~v~e~y--~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 183 YVAAINRFEEVLENY--PDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred hHHHHHHHHHHHhcc--ccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 999999999998872 11112233455566888889988888887766665555443
No 211
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.35 E-value=0.00053 Score=40.86 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHH
Q 048394 430 VTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIK 471 (485)
Q Consensus 430 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 471 (485)
.++..+..+|...|++++|+++++++++..|.|+.+|..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 457778889999999999999999999999999999988865
No 212
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.30 E-value=0.1 Score=49.58 Aligned_cols=100 Identities=12% Similarity=0.099 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhc
Q 048394 78 MLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKE 157 (485)
Q Consensus 78 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~ 157 (485)
.+..-+..+...|.+++|..+- --| .....|.-+.......=+++-|.+.+.+.+.
T Consensus 558 p~~~~m~q~Ieag~f~ea~~ia----clg--Vv~~DW~~LA~~ALeAL~f~~ARkAY~rVRd------------------ 613 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIA----CLG--VTDTDWRELAMEALEALDFETARKAYIRVRD------------------ 613 (1081)
T ss_pred cccccchhhhhccchhhhhccc----ccc--eecchHHHHHHHHHhhhhhHHHHHHHHHHhc------------------
Confidence 3344455566777777765431 112 2333344444433344445555554444432
Q ss_pred CcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHH
Q 048394 158 LMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQ 204 (485)
Q Consensus 158 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 204 (485)
-.+-+.+.-+++++++|-.|+... +...++-.|.+.+|-++|.+
T Consensus 614 l~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 614 LRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred cHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 112223334566777776666543 33445555666666666543
No 213
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.27 E-value=0.14 Score=46.60 Aligned_cols=371 Identities=12% Similarity=0.102 Sum_probs=205.7
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcc-cCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCC
Q 048394 97 EVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE-YAKNRYTYGALLNCYCKELMTERALALFEKMDELKF 175 (485)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 175 (485)
++=+++++. +-|..+|-.|+.-+...|..++.+++++++.. .+--..+|..-+++-...+++.....+|.+.+....
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 444444443 46788999999999999999999999999998 444567899889888888999999999999987654
Q ss_pred CCChhhHHHHHHHHHhCCCcc------cHHHHHHHHHH-cCCCccH-HHHHHHHH---HHHhcC------CHhHHHHHHH
Q 048394 176 LGNTVAFNNLSTMYLRLGQPE------KVRPLVNQMKQ-RNISLDN-LTYIVWMQ---SYSHLN------DIDGVERVFY 238 (485)
Q Consensus 176 ~p~~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~-~~~~p~~-~~~~~l~~---~~~~~~------~~~~a~~~~~ 238 (485)
. ...|...+..-.+.+..- ...+.|+-... .++.|-. ..|+..+. ..-..| ++|.....+.
T Consensus 108 ~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 108 N--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred c--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 4 556666665444433211 12223333222 2344432 22333222 211223 3444555555
Q ss_pred HHHhccCCCC---cHHHHHHH---HHHHH-------hcccHHHHHHHHHHHHh-------cCCC----------------
Q 048394 239 EMCNECEDKC---RWTTYSNL---ASIYV-------KAELFEKAELALKKLEE-------MKPR---------------- 282 (485)
Q Consensus 239 ~~~~~~~~~~---~~~~~~~l---~~~~~-------~~~~~~~A~~~~~~~~~-------~~~~---------------- 282 (485)
++.... ... -+.-|... ++-.. ..--+-.|...++++.. ..|.
T Consensus 186 ral~tP-~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~W 264 (660)
T COG5107 186 RALQTP-MGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNW 264 (660)
T ss_pred HHHcCc-cccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchh
Confidence 555411 000 01111000 00000 00012223333333222 0111
Q ss_pred ------------------------------------ChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHH
Q 048394 283 ------------------------------------DRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQ 326 (485)
Q Consensus 283 ------------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 326 (485)
.+..|..-...+...++-..|+...+......| ..-..+..
T Consensus 265 lNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sp---sL~~~lse 341 (660)
T COG5107 265 LNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSP---SLTMFLSE 341 (660)
T ss_pred hhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCC---chheeHHH
Confidence 111111112222233344444444433322221 11111222
Q ss_pred HHHhcCChhHHHHHHHHHHH--------------ccCC---------------CCHHhHHHHHHHHHhcCcHHHHHHHHH
Q 048394 327 ALAKLNAIDILKQCFEEWES--------------RCSS---------------YDMRLADVIIRAYLQKDMYEEAALIFN 377 (485)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~--------------~~~~---------------~~~~~~~~l~~~~~~~~~~~~A~~~~~ 377 (485)
.|.-.++-+.....|+...+ .+.. --..+|...+....+...++.|..+|-
T Consensus 342 ~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~ 421 (660)
T COG5107 342 YYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFI 421 (660)
T ss_pred HHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 23333333333333322211 0110 013345566777777888999999999
Q ss_pred HHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 048394 378 NAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKS 457 (485)
Q Consensus 378 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 457 (485)
++.+.++. .++...++.++..++ .|+..-|..+|+--+.. ++.+.......+.-+...+|-+.|..+|+..++
T Consensus 422 k~rk~~~~-~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-----f~d~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 422 KLRKEGIV-GHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-----FPDSTLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred HHhccCCC-CcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-----CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 99998842 788888999887654 67889999999988776 555555667777888889999999999997766
Q ss_pred cCCCC--HHHHHHHHHHHHHhCCCcch
Q 048394 458 LNCLD--FSAYSLLIKTYIAAGKLASD 482 (485)
Q Consensus 458 ~~~~~--~~~~~~l~~~~~~~g~~~~A 482 (485)
.-..+ ..+|..++.--..-|+.+.|
T Consensus 495 r~~~~q~k~iy~kmi~YEs~~G~lN~v 521 (660)
T COG5107 495 RLEKTQLKRIYDKMIEYESMVGSLNNV 521 (660)
T ss_pred HHHHhhhhHHHHHHHHHHHhhcchHHH
Confidence 43333 56777777776666766544
No 214
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.26 E-value=0.0019 Score=43.67 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=30.0
Q ss_pred HHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC
Q 048394 259 IYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP 316 (485)
Q Consensus 259 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 316 (485)
.|.+.+++++|.++++.+....|.++..|.....++...|++++|...++...+..|.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 3444555555555555555555545555555555555555555555555555544443
No 215
>PRK15331 chaperone protein SicA; Provisional
Probab=97.26 E-value=0.0028 Score=49.40 Aligned_cols=96 Identities=9% Similarity=-0.082 Sum_probs=73.8
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHH
Q 048394 359 IIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRF 438 (485)
Q Consensus 359 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 438 (485)
...-+...|++++|..+|.-+...+ .-+..-|..|...+-..+++++|+..|......+ ..|+..+.....+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d---~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-----~~dp~p~f~agqC 114 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYD---FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-----KNDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----cCCCCccchHHHH
Confidence 3444567899999999999888765 3445556677777778899999999999988764 3445556667788
Q ss_pred HhhcCChhhHHHHHHHHhhcCCCCH
Q 048394 439 FEEEKDVDGAEEFCKVLKSLNCLDF 463 (485)
Q Consensus 439 ~~~~~~~~~A~~~~~~~~~~~~~~~ 463 (485)
+...|+.+.|...|+.+.+. |.+.
T Consensus 115 ~l~l~~~~~A~~~f~~a~~~-~~~~ 138 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNER-TEDE 138 (165)
T ss_pred HHHhCCHHHHHHHHHHHHhC-cchH
Confidence 89999999999999999883 4443
No 216
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.11 Score=43.67 Aligned_cols=133 Identities=10% Similarity=-0.009 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHh-cCCC-----ChHHHHH
Q 048394 216 TYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEE-MKPR-----DRKAYHF 289 (485)
Q Consensus 216 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~-----~~~~~~~ 289 (485)
+.+.++..+.-.|.+.-....+.+.++ ...+.++.....+++.-.+.||.+.|...|+..++ .... .......
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~-~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIK-YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHH-hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 345566666666777777777777777 44566666677777777777888887777776655 1111 2222233
Q ss_pred HHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccC
Q 048394 290 LISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCS 349 (485)
Q Consensus 290 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 349 (485)
....|.-.+++..|...+.++....+.+....|.-.-+....|+..+|.+.++.|.+..+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 334455566666777777767666666666666555556666777777777777766533
No 217
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.12 Score=43.50 Aligned_cols=136 Identities=11% Similarity=0.043 Sum_probs=110.1
Q ss_pred hHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcc----CCCCcHHHHHHH
Q 048394 181 AFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNEC----EDKCRWTTYSNL 256 (485)
Q Consensus 181 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~l 256 (485)
..+.++..+.-.|.+.-...++++.++...+-++.....+.+.-.+.||.+.|...|+...+.. +......+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4467777778888899999999999987666678888888999999999999999999777622 223333334444
Q ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC
Q 048394 257 ASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP 316 (485)
Q Consensus 257 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 316 (485)
...|.-.+++..|...+.++...++.++...|.-.-+..-.|+...|.+.++.|....|.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 556677889999999999998888889999998888888899999999999999988776
No 218
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.14 E-value=0.026 Score=44.43 Aligned_cols=56 Identities=16% Similarity=0.183 Sum_probs=26.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 048394 289 FLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEW 344 (485)
Q Consensus 289 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 344 (485)
.++..+...|+++.|..+...+....|.+...+..++.++...|+...|.++|+.+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 34444444555555555555555555445555555555555555555555555443
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.13 E-value=0.0026 Score=43.74 Aligned_cols=67 Identities=19% Similarity=0.170 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcC-CCcc-HHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 048394 391 KSRESFMIYYLRSRQLDLALNEMEAALSEAKQFH-WRPM-QVTVDTFFRFFEEEKDVDGAEEFCKVLKS 457 (485)
Q Consensus 391 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 457 (485)
.+|+.+...|...|++++|+..|++.++.....+ ..|+ ..++..+..++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3566677777777777777777777776522211 1122 44666777777788888888888777665
No 220
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.11 E-value=0.19 Score=45.63 Aligned_cols=77 Identities=13% Similarity=-0.025 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHhhcccC-C----CHhHHHHHHHHHHh---cCcHHHHHHHHHHHHhCCCCCChhhHHHH
Q 048394 114 FAVYLDLTAKTNGIAAAEKYFNGLSEYA-K----NRYTYGALLNCYCK---ELMTERALALFEKMDELKFLGNTVAFNNL 185 (485)
Q Consensus 114 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~----~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 185 (485)
...++-.|....+++...++++.+...+ . ...+--...-++-+ .|+.++|++++..+......+++.+|..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3345556778888888888888887721 1 11122233344556 78889999998886666666778888877
Q ss_pred HHHHH
Q 048394 186 STMYL 190 (485)
Q Consensus 186 ~~~~~ 190 (485)
.+.|-
T Consensus 224 GRIyK 228 (374)
T PF13281_consen 224 GRIYK 228 (374)
T ss_pred HHHHH
Confidence 77663
No 221
>PRK15331 chaperone protein SicA; Provisional
Probab=97.08 E-value=0.0092 Score=46.57 Aligned_cols=86 Identities=10% Similarity=0.047 Sum_probs=48.5
Q ss_pred HhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHH
Q 048394 261 VKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQC 340 (485)
Q Consensus 261 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 340 (485)
...|++++|..+|.-+...++.+..-|..|..++-..+++++|...|...-...+.|+..+.....++...|+.+.|...
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHH
Confidence 34556666666655555555555555555555555556666666655555544444555555555555556666666665
Q ss_pred HHHHHH
Q 048394 341 FEEWES 346 (485)
Q Consensus 341 ~~~~~~ 346 (485)
|....+
T Consensus 128 f~~a~~ 133 (165)
T PRK15331 128 FELVNE 133 (165)
T ss_pred HHHHHh
Confidence 555544
No 222
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.05 E-value=0.17 Score=43.38 Aligned_cols=204 Identities=17% Similarity=0.019 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHH-
Q 048394 250 WTTYSNLASIYVKAELFEKAELALKKLEE--MKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQ- 326 (485)
Q Consensus 250 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~- 326 (485)
...+......+...+++..+...+..... ..+.....+......+...+++..+...+.........+.........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 34444555556666666666666655554 344445555555556666666666666666665544443222222233
Q ss_pred HHHhcCChhHHHHHHHHHHHccC--CCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCC-chhHHHHHHHHHHhc
Q 048394 327 ALAKLNAIDILKQCFEEWESRCS--SYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASAR-FFKSRESFMIYYLRS 403 (485)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 403 (485)
.+...|+++.|...+........ ......+......+...++.+.+...+.+..... .. ....+..+...+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN---PDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC---cccchHHHHHhhHHHHHc
Confidence 56667777777777776644221 1123333334444556677777777777776653 22 245566666667777
Q ss_pred ccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCC
Q 048394 404 RQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCL 461 (485)
Q Consensus 404 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 461 (485)
++++.|...+....... +.....+..+...+...+..+.+...+.+..+..|.
T Consensus 216 ~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELD-----PDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhC-----cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 77777777777777653 222334444444444556677777777777766554
No 223
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.03 E-value=0.32 Score=46.20 Aligned_cols=85 Identities=13% Similarity=0.156 Sum_probs=49.0
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hhCCHHHHHHHHHhhcc----cCCCHhHHHHHHHHHHhcCcHH
Q 048394 87 RKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTA-KTNGIAAAEKYFNGLSE----YAKNRYTYGALLNCYCKELMTE 161 (485)
Q Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~ 161 (485)
.+.|..+.+.++|++-... ++.+...|...+..+. ..|+.+.....|+.... .--+...|...|.--..++++.
T Consensus 90 ~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k 168 (577)
T KOG1258|consen 90 YKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWK 168 (577)
T ss_pred HHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHH
Confidence 4456666667777665442 3445555555544333 34566666666666555 1223445666666666666677
Q ss_pred HHHHHHHHHHh
Q 048394 162 RALALFEKMDE 172 (485)
Q Consensus 162 ~A~~~~~~m~~ 172 (485)
....++++.++
T Consensus 169 ~v~~iyeRile 179 (577)
T KOG1258|consen 169 RVANIYERILE 179 (577)
T ss_pred HHHHHHHHHHh
Confidence 77777766665
No 224
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.92 E-value=0.29 Score=43.97 Aligned_cols=281 Identities=16% Similarity=0.079 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcc-cCCCHhHHHHHHHHHHh
Q 048394 78 MLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE-YAKNRYTYGALLNCYCK 156 (485)
Q Consensus 78 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~ 156 (485)
+|..+.......|+.+-|..+++. +|+.. .-+..+.+.|+.+.|+. +..+ ..|| -+|..|++.--+
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~------Ep~~~---~qVplLL~m~e~e~AL~---kAi~SgD~D-Li~~vLl~L~~~ 68 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLEL------EPRAS---KQVPLLLKMGEDELALN---KAIESGDTD-LIYLVLLHLKRK 68 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHc------CCChH---HHHHHHhcCCchHHHHH---HHHHcCCcc-HHHHHHHHHHHh
Confidence 467778888899999999998764 34442 23555666777777643 2222 2233 244445543222
Q ss_pred cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHH
Q 048394 157 ELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERV 236 (485)
Q Consensus 157 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 236 (485)
. ... +++ .+.... |. . ..+...|++..+.+....+|.+--+. .......+-.++.. .+.+.-...
T Consensus 69 l-~~s---~f~-~il~~~--p~--a-~~l~~~~~r~~~~~~L~~~y~q~d~~----~~~a~~~l~~~~~~-~~~~~~~~~ 133 (319)
T PF04840_consen 69 L-SLS---QFF-KILNQN--PV--A-SNLYKKYCREQDRELLKDFYYQEDRF----QELANLHLQEALSQ-KDVEEKISF 133 (319)
T ss_pred C-CHH---HHH-HHHHhC--cc--h-HHHHHHHHHhccHHHHHHHHHhcchH----HHHHHHHHHHHHhC-CChHHHHHH
Confidence 2 111 223 333321 22 1 33444566655555555555432111 11112222222222 444444444
Q ss_pred HHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHH---HHh--cCCCChHHHHHHHHHHHhcCChhhHHHHHHHhh
Q 048394 237 FYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKK---LEE--MKPRDRKAYHFLISLYCNTSNLDAVNRVWGILK 311 (485)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 311 (485)
+..+.+..+...+......++. +..++++. +.. .......+.+.-+.-+...|+...|.++-.+.
T Consensus 134 L~~a~~~y~~~k~~~f~~~~~e---------~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~F- 203 (319)
T PF04840_consen 134 LKQAQKLYSKSKNDAFEAKLIE---------EQIKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEF- 203 (319)
T ss_pred HHHHHHHHHhcchhHHHHHHHH---------HHHHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHHc-
Confidence 4444331111112111111111 11122211 111 11112335555667777888888877775554
Q ss_pred hcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchh
Q 048394 312 STFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFK 391 (485)
Q Consensus 312 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~ 391 (485)
.+++..-|...+.+++..+++++..++-.. +-++.-|..++.+|.+.|+..+|..+..++ .
T Consensus 204 --kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI~k~-------~---- 264 (319)
T PF04840_consen 204 --KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYIPKI-------P---- 264 (319)
T ss_pred --CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHHHhC-------C----
Confidence 355788889999999999999887776432 125577888999999999999999888762 2
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHH
Q 048394 392 SRESFMIYYLRSRQLDLALNEMEAA 416 (485)
Q Consensus 392 ~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (485)
+..-+..|.+.|++.+|.+.--+.
T Consensus 265 -~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 265 -DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred -hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 234567788999999988765443
No 225
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.91 E-value=0.01 Score=48.50 Aligned_cols=36 Identities=8% Similarity=0.036 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhccc
Q 048394 368 MYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQ 405 (485)
Q Consensus 368 ~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 405 (485)
+-+-|++++++|...|+ -||..++..+++.|.+.+.
T Consensus 118 Qq~c~i~lL~qME~~gV--~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGV--MPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHhccccH
Confidence 45778999999999999 9999999999999977664
No 226
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.88 E-value=0.05 Score=47.89 Aligned_cols=233 Identities=12% Similarity=0.019 Sum_probs=107.3
Q ss_pred HhcCCHhHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHh--cCC----CChHHHHHHHHHHHhc
Q 048394 225 SHLNDIDGVERVFYEMCNEC-EDKCRWTTYSNLASIYVKAELFEKAELALKKLEE--MKP----RDRKAYHFLISLYCNT 297 (485)
Q Consensus 225 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~ 297 (485)
....+.++|+..+......- ....-..+|..+..+.++.|.+++++..--.-.+ ... .--.+|..+.+++-+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777776666554411 1222334555666666777766666543322211 000 1123344444444444
Q ss_pred CChhhHHHHHHHhhhcCCC-----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcc-----CCCCHHhHHHHHHHHHhcC
Q 048394 298 SNLDAVNRVWGILKSTFPP-----TNTSYLVLLQALAKLNAIDILKQCFEEWESRC-----SSYDMRLADVIIRAYLQKD 367 (485)
Q Consensus 298 ~~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~ 367 (485)
.++.+++.+-..-...... ......++..++...+.++++++.|+...+-. ......++-.|...|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 4444444433322211110 11223344555555556666666666554321 1112334555666666666
Q ss_pred cHHHHHHHHHHHHhc--ccccCCchhHHHHHHH-----HHHhcccHHHHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHH
Q 048394 368 MYEEAALIFNNAKKR--ANASARFFKSRESFMI-----YYLRSRQLDLALNEMEAALSEAKQFHWRPM-QVTVDTFFRFF 439 (485)
Q Consensus 368 ~~~~A~~~~~~~~~~--~~~~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~ 439 (485)
++++|.-+..+..+. .+....-..-|..++. ++...|....|.+..++..+.....+..+. ......+...|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 666666665555443 1100111122333321 223456666666666666665544333332 22334445556
Q ss_pred hhcCChhhHHHHHHHHhh
Q 048394 440 EEEKDVDGAEEFCKVLKS 457 (485)
Q Consensus 440 ~~~~~~~~A~~~~~~~~~ 457 (485)
...|+.+.|..-|+.+..
T Consensus 257 R~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HhcccHhHHHHHHHHHHH
Confidence 666666665555555544
No 227
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.024 Score=50.84 Aligned_cols=109 Identities=14% Similarity=0.077 Sum_probs=59.2
Q ss_pred HHHHhcCCHhHHHHHHHHHHhcc----CCC---------CcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHH
Q 048394 222 QSYSHLNDIDGVERVFYEMCNEC----EDK---------CRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYH 288 (485)
Q Consensus 222 ~~~~~~~~~~~a~~~~~~~~~~~----~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 288 (485)
+.|.+.|++..|...|+.....- ..+ .-..++..+..+|.+.+++..|+...+......|+|.....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 34566677777777666654410 011 11223444555566666666666666666665555666555
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHh
Q 048394 289 FLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAK 330 (485)
Q Consensus 289 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 330 (485)
--..+|...|+++.|...|+++.+..|.|..+-+.++.+--+
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 556666666666666666666665555554444444444333
No 228
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.83 E-value=0.051 Score=41.49 Aligned_cols=68 Identities=18% Similarity=0.259 Sum_probs=32.8
Q ss_pred HhcccHHHHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC-ChhhHHHHHHHH
Q 048394 261 VKAELFEKAELALKKLEEMKP---RDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP-TNTSYLVLLQAL 328 (485)
Q Consensus 261 ~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~ 328 (485)
.+.|++++|.+.|+.+....| -...+...++.+|.+.+++++|...+++..+..|. ....|...+.++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 345555555555555555222 22334444555555555555555555555555554 333344344433
No 229
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.80 E-value=0.0069 Score=41.57 Aligned_cols=67 Identities=18% Similarity=0.143 Sum_probs=45.8
Q ss_pred HHhHHHHHHHHHhcCcHHHHHHHHHHHHhcc--c-ccCCc-hhHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 048394 353 MRLADVIIRAYLQKDMYEEAALIFNNAKKRA--N-ASARF-FKSRESFMIYYLRSRQLDLALNEMEAALSE 419 (485)
Q Consensus 353 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 419 (485)
..+++.+...|...|++++|+..|++..+.. . ...|+ ..++..+...|...|++++|++++++..+.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3466777888888888888888888776431 1 00222 445677777888888888888888887664
No 230
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.31 Score=42.12 Aligned_cols=145 Identities=14% Similarity=0.009 Sum_probs=83.9
Q ss_pred HHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhH
Q 048394 153 CYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDG 232 (485)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 232 (485)
.....|++.+|..+|+........ +...--.++.+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345677777888777777765544 4455666777777788888887777776543211122222223444444444444
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcCChh
Q 048394 233 VERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEE--MKPRDRKAYHFLISLYCNTSNLD 301 (485)
Q Consensus 233 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~ 301 (485)
...+-...-. .+.|...-..+...+...|+.+.|.+.+-.+.. ..-.+...-..+++.+.--|.-+
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 4444444433 555666666677777777777777766655555 23334555555665555555333
No 231
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.017 Score=51.72 Aligned_cols=76 Identities=14% Similarity=-0.003 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHH
Q 048394 393 RESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKT 472 (485)
Q Consensus 393 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 472 (485)
+..+..+|.+.+++..|++..++.+.. -+++...+..=..+|...|+++.|+..|+++.+..|.|..+-..|+.+
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~-----~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLEL-----DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL 334 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhc-----CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 334444445555555555555555544 233444444444455555555555555555555555554444444443
Q ss_pred H
Q 048394 473 Y 473 (485)
Q Consensus 473 ~ 473 (485)
-
T Consensus 335 ~ 335 (397)
T KOG0543|consen 335 K 335 (397)
T ss_pred H
Confidence 3
No 232
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.77 E-value=0.048 Score=46.38 Aligned_cols=61 Identities=15% Similarity=0.112 Sum_probs=25.8
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC
Q 048394 256 LASIYVKAELFEKAELALKKLEEMKP---RDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP 316 (485)
Q Consensus 256 l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 316 (485)
|..++...|+++.|..+|..+.+..| .-+.++..+..+..+.|+.++|..+|+++.+..|.
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 44444444444444444444444111 22333444444444444444444444444444433
No 233
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.76 E-value=0.082 Score=45.01 Aligned_cols=110 Identities=10% Similarity=-0.095 Sum_probs=80.0
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHH
Q 048394 355 LADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDT 434 (485)
Q Consensus 355 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (485)
.|+.-+.. .+.|++..|..-|...++......-....+-.|..++...|++++|...|..+.+..+. .+.-++.+..
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~--s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK--SPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC--CCCChHHHHH
Confidence 57755554 45677999999999888763211222334556888899999999999999998886421 2233567777
Q ss_pred HHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHH
Q 048394 435 FFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYS 467 (485)
Q Consensus 435 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 467 (485)
|..+..+.|+.++|...|+++.+..|..+.+-.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 788888899999999999999998887765543
No 234
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.27 Score=41.01 Aligned_cols=202 Identities=17% Similarity=0.195 Sum_probs=91.7
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHhhcc-cCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 048394 113 DFAVYLDLTAKTNGIAAAEKYFNGLSE-YAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLR 191 (485)
Q Consensus 113 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 191 (485)
.|.....+|....++++|...+.+..+ ...|...|.+ ...++.|.-+.++|....- -+..|+-....|..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhA-------AKayEqaamLake~~klsE--vvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA-------AKAYEQAAMLAKELSKLSE--VVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH-------HHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHH
Confidence 344445556666667776666665554 2222222221 2334555555555554321 12345555666677
Q ss_pred CCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHh----ccCCCCcHHHHHHHHHHHHhcccHH
Q 048394 192 LGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCN----ECEDKCRWTTYSNLASIYVKAELFE 267 (485)
Q Consensus 192 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~ 267 (485)
.|.++.|-..+++.-+. ...-+++.|++++++... .....--...+......+++...++
T Consensus 104 ~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred hCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 77776666665554331 112233333333333221 0011112223333445555556665
Q ss_pred HHHHHHHHHHh------cCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhc---CCC-ChhhHHHHHHHHHhcCChhHH
Q 048394 268 KAELALKKLEE------MKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKST---FPP-TNTSYLVLLQALAKLNAIDIL 337 (485)
Q Consensus 268 ~A~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~~~~~~a 337 (485)
+|-..+.+-.. ..+..-..|...|-.+....++..|...++.-.+. ..+ +..+...|+.+| ..|+.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence 55544433222 11111223444444555555666666666653221 112 445555555554 23555554
Q ss_pred HHH
Q 048394 338 KQC 340 (485)
Q Consensus 338 ~~~ 340 (485)
.++
T Consensus 247 ~kv 249 (308)
T KOG1585|consen 247 KKV 249 (308)
T ss_pred HHH
Confidence 443
No 235
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.72 E-value=0.3 Score=41.33 Aligned_cols=51 Identities=24% Similarity=0.257 Sum_probs=23.4
Q ss_pred hhCCHHHHHHHHHhhcccCC----CHhHHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 048394 123 KTNGIAAAEKYFNGLSEYAK----NRYTYGALLNCYCKELMTERALALFEKMDEL 173 (485)
Q Consensus 123 ~~g~~~~a~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 173 (485)
+.|++++|.+.|+.+....| ...+--.++.++.+.++++.|+..+++....
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 34555555555555444111 1223334444445555555555555555443
No 236
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.72 E-value=0.32 Score=41.57 Aligned_cols=211 Identities=14% Similarity=0.039 Sum_probs=156.0
Q ss_pred cccHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHhcCChhhHHHHHHHhhh--cCCCChhhHHHHHHHHHhcCChhHHH
Q 048394 263 AELFEKAELALKKLEEMKPR--DRKAYHFLISLYCNTSNLDAVNRVWGILKS--TFPPTNTSYLVLLQALAKLNAIDILK 338 (485)
Q Consensus 263 ~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~ 338 (485)
.+....+...+.......+. ....+......+...+.+..+...+..... ........+......+...++...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35555666666665554432 367788888889999999999998888776 33446777778888888889999999
Q ss_pred HHHHHHHHccCCCCHHhHHHHHH-HHHhcCcHHHHHHHHHHHHhcccccCC----chhHHHHHHHHHHhcccHHHHHHHH
Q 048394 339 QCFEEWESRCSSYDMRLADVIIR-AYLQKDMYEEAALIFNNAKKRANASAR----FFKSRESFMIYYLRSRQLDLALNEM 413 (485)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~ 413 (485)
+.+.........+ ......... .+...|+++.|...+.+.... .| ....+......+...++.+.+...+
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 190 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL----DPELNELAEALLALGALLEALGRYEEALELL 190 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCccchHHHHHHhhhHHHHhcCHHHHHHHH
Confidence 9999988765543 222222333 788999999999999998653 33 2233334444467789999999999
Q ss_pred HHHHHHhhhcCCCc-cHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcchh
Q 048394 414 EAALSEAKQFHWRP-MQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDM 483 (485)
Q Consensus 414 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 483 (485)
...... .+. ....+..+...+...++++.|...+.......|.....+..+...+...|.++++.
T Consensus 191 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (291)
T COG0457 191 EKALKL-----NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEAL 256 (291)
T ss_pred HHHHhh-----CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHH
Confidence 999987 444 47788888889999999999999999999988876667777777776555555543
No 237
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.72 E-value=0.068 Score=49.20 Aligned_cols=69 Identities=12% Similarity=-0.021 Sum_probs=53.4
Q ss_pred CCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHhcCChhhHHHHHHHhhhc
Q 048394 245 EDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDR---KAYHFLISLYCNTSNLDAVNRVWGILKST 313 (485)
Q Consensus 245 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 313 (485)
..+.+...++.+..+|.+.|++++|+..|++..+..|.+. .+|..+..+|...|+.++|...+++..+.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3555677778888888888888888888888887777665 34888888888888888888888887664
No 238
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.70 E-value=0.4 Score=42.47 Aligned_cols=165 Identities=12% Similarity=0.074 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHhcCChh---hHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHH
Q 048394 285 KAYHFLISLYCNTSNLD---AVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIR 361 (485)
Q Consensus 285 ~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 361 (485)
.+...++.+|...+..+ +|..+++.+....+..+..+..-+..+.+.++.+.+.+++..|...-.. ....+...+.
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l~ 163 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHHH
Confidence 34555666666655543 4455555555555555555555666666667777777777777665221 2223333333
Q ss_pred HH---HhcCcHHHHHHHHHHHHhcccccCCchh-HHHHH-HHH-H--Hhc------ccHHHHHHHHHHHHHHhhhcCCCc
Q 048394 362 AY---LQKDMYEEAALIFNNAKKRANASARFFK-SRESF-MIY-Y--LRS------RQLDLALNEMEAALSEAKQFHWRP 427 (485)
Q Consensus 362 ~~---~~~~~~~~A~~~~~~~~~~~~~~~p~~~-~~~~l-~~~-~--~~~------g~~~~A~~~~~~~~~~~~~~~~~~ 427 (485)
.+ .. .....|...++.+....+ .|... ....+ +.. + .+. +..+...++++...+.. ..+.
T Consensus 164 ~i~~l~~-~~~~~a~~~ld~~l~~r~--~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~---~~~l 237 (278)
T PF08631_consen 164 HIKQLAE-KSPELAAFCLDYLLLNRF--KSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSL---GKQL 237 (278)
T ss_pred HHHHHHh-hCcHHHHHHHHHHHHHHh--CCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHh---cCCC
Confidence 32 32 233455555555554444 33332 11111 111 1 111 11344444455333221 1222
Q ss_pred cHHH---HHHHH----HHHhhcCChhhHHHHHHHHh
Q 048394 428 MQVT---VDTFF----RFFEEEKDVDGAEEFCKVLK 456 (485)
Q Consensus 428 ~~~~---~~~l~----~~~~~~~~~~~A~~~~~~~~ 456 (485)
+..+ ..+++ ..+.+.++++.|..+|+-..
T Consensus 238 s~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 238 SAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 3333 33333 34567789999999887654
No 239
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.69 E-value=0.2 Score=47.98 Aligned_cols=179 Identities=11% Similarity=-0.040 Sum_probs=114.5
Q ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CCCh------HHHHHHHHHHHh----cCChhh
Q 048394 234 ERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMK-PRDR------KAYHFLISLYCN----TSNLDA 302 (485)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~------~~~~~l~~~~~~----~~~~~~ 302 (485)
.-+|.-+.. -.||...- +++...-.||-+.+++.+....+.. -..+ ..|...+..++. ....+.
T Consensus 177 ~G~f~L~lS--lLPp~~~k---ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 177 FGLFNLVLS--LLPPKVLK---LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHH--hCCHHHHH---HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 345555555 45555554 6777777788888888887766521 1111 233444443333 345678
Q ss_pred HHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcc---CCCCHHhHHHHHHHHHhcCcHHHHHHHHHHH
Q 048394 303 VNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRC---SSYDMRLADVIIRAYLQKDMYEEAALIFNNA 379 (485)
Q Consensus 303 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 379 (485)
|.+++..+....|....-...-...+...|++++|.+.|+...... .+.....+--+.-.+.-..+|++|...|..+
T Consensus 252 a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 252 AEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 8888988888888766666666677778899999999998755321 1112233344566677788999999999998
Q ss_pred HhcccccCCchhHHHHHHHHH-HhcccH-------HHHHHHHHHHHHHh
Q 048394 380 KKRANASARFFKSRESFMIYY-LRSRQL-------DLALNEMEAALSEA 420 (485)
Q Consensus 380 ~~~~~~~~p~~~~~~~l~~~~-~~~g~~-------~~A~~~~~~~~~~~ 420 (485)
.+.+ ......|.-+..+| ...|+. ++|.+++.+.....
T Consensus 332 ~~~s---~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 332 LKES---KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred Hhcc---ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 8865 33444554444333 456666 88888888876543
No 240
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.62 E-value=0.57 Score=43.25 Aligned_cols=125 Identities=8% Similarity=-0.061 Sum_probs=68.0
Q ss_pred CHHhHHHHHHHHHhcCcHHHHHHHHHHHHhccccc-CCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCC-----
Q 048394 352 DMRLADVIIRAYLQKDMYEEAALIFNNAKKRANAS-ARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHW----- 425 (485)
Q Consensus 352 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----- 425 (485)
...+|..++..+.+.|.++.|...+.++...+... ...+.....-+...-..|+..+|+..++...........
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 34455566666666666666666666665532100 002222223344445566666666666665552111000
Q ss_pred ------------------------CccHHHHHHHHHHHhhc------CChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 048394 426 ------------------------RPMQVTVDTFFRFFEEE------KDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIA 475 (485)
Q Consensus 426 ------------------------~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 475 (485)
..-...+..+...+... ++.+++.+.|+.+.+..|....+|..++..+.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 00012233333333344 777888888888888888887888888877766
Q ss_pred h
Q 048394 476 A 476 (485)
Q Consensus 476 ~ 476 (485)
.
T Consensus 305 ~ 305 (352)
T PF02259_consen 305 L 305 (352)
T ss_pred H
Confidence 4
No 241
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.60 E-value=0.21 Score=47.78 Aligned_cols=163 Identities=13% Similarity=0.088 Sum_probs=112.7
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHH-----HHHHHHHHHHh----cccHHHHHHHHHHHHhcCCCChHHHH
Q 048394 218 IVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWT-----TYSNLASIYVK----AELFEKAELALKKLEEMKPRDRKAYH 288 (485)
Q Consensus 218 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 288 (485)
..++....-.||-+.+++.+....+..+..-... .|...+..++. ..+.+.|.+++..+.+..|....-..
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~ 271 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF 271 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 4466666778999999999998877333322222 23333333332 45788899999999988886666666
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhhcCC--C--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHH-HHH
Q 048394 289 FLISLYCNTSNLDAVNRVWGILKSTFP--P--TNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVII-RAY 363 (485)
Q Consensus 289 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~ 363 (485)
.-.+.+...|++++|.+.|+....... + ....+--+...+.-..++++|.+.|..+.+.. ..+..+|.-+. .++
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHH
Confidence 677788899999999999997654222 2 44556677778888999999999999998753 22444444333 334
Q ss_pred HhcCcH-------HHHHHHHHHHHh
Q 048394 364 LQKDMY-------EEAALIFNNAKK 381 (485)
Q Consensus 364 ~~~~~~-------~~A~~~~~~~~~ 381 (485)
...|+. ++|..+|.+...
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHH
Confidence 566777 888888887654
No 242
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.59 E-value=0.31 Score=39.90 Aligned_cols=82 Identities=15% Similarity=0.101 Sum_probs=38.1
Q ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 048394 265 LFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEW 344 (485)
Q Consensus 265 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 344 (485)
-+.-|.--|.+...+.|.-+.+||-+.--+...|+++.|.+.|+...+..|....+...-.-++.-.|++.-|.+=+...
T Consensus 80 L~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~f 159 (297)
T COG4785 80 LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAF 159 (297)
T ss_pred HHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHH
Confidence 33334444444444445455555555555555555555555555555555442222222222233345555555444444
Q ss_pred HH
Q 048394 345 ES 346 (485)
Q Consensus 345 ~~ 346 (485)
-+
T Consensus 160 YQ 161 (297)
T COG4785 160 YQ 161 (297)
T ss_pred Hh
Confidence 33
No 243
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.59 E-value=0.4 Score=45.86 Aligned_cols=218 Identities=13% Similarity=0.128 Sum_probs=110.6
Q ss_pred HHHHHHHHHHcCC--hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHH-----HH
Q 048394 79 LEYCVRSLRKFGR--YRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGA-----LL 151 (485)
Q Consensus 79 ~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-----li 151 (485)
++..=++|.+-++ +-+-+--+++++++|-.|+.. .+...++-.|++.+|-++|.+-.....-...|+. +.
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i---LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~a 677 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDL---LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYA 677 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH---HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHH
Confidence 3444455555444 334445556677777667763 3445566678888888888766541111222221 22
Q ss_pred HHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHH------HHHcCCCc---cHHHHHHHHH
Q 048394 152 NCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQ------MKQRNISL---DNLTYIVWMQ 222 (485)
Q Consensus 152 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~------~~~~~~~p---~~~~~~~l~~ 222 (485)
.-+...|..++-..+.++-.+. ..|..-=.+....+...|+.++|..+.-+ +.+.+.+. +..+...+..
T Consensus 678 QE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ 755 (1081)
T KOG1538|consen 678 QEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCAT 755 (1081)
T ss_pred HHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHH
Confidence 3344555555544444332211 11111113344555667777777665321 12222122 2333444444
Q ss_pred HHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC----------ChHHHHHHHH
Q 048394 223 SYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPR----------DRKAYHFLIS 292 (485)
Q Consensus 223 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~ 292 (485)
-+.+...+..|-++|..|-. ...+++.....++|++|..+-++..+..+. ...-|...-.
T Consensus 756 ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqk 825 (1081)
T KOG1538|consen 756 YLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQK 825 (1081)
T ss_pred HHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHH
Confidence 44555666777777777654 122677777888888888887775442221 0111222233
Q ss_pred HHHhcCChhhHHHHHHHhh
Q 048394 293 LYCNTSNLDAVNRVWGILK 311 (485)
Q Consensus 293 ~~~~~~~~~~a~~~~~~~~ 311 (485)
+|.+.|+-.+|.++++++.
T Consensus 826 AfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 826 AFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred HHHHhcchHHHHHHHHHhh
Confidence 4555555555555555543
No 244
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.35 Score=40.38 Aligned_cols=210 Identities=12% Similarity=0.107 Sum_probs=114.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 048394 216 TYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYC 295 (485)
Q Consensus 216 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 295 (485)
.|.-...+|....++++|...+....+ +...+...|. . .+.++.|.-+.+++.+... -...|+.....|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~--~yEnnrslfh-A------AKayEqaamLake~~klsE-vvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASK--GYENNRSLFH-A------AKAYEQAAMLAKELSKLSE-VVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHH--HHHhcccHHH-H------HHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHH
Confidence 344455566667777777776666665 2222222111 1 2233444444444443222 2345556666677
Q ss_pred hcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc---cC--CCCHHhHHHHHHHHHhcCcHH
Q 048394 296 NTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESR---CS--SYDMRLADVIIRAYLQKDMYE 370 (485)
Q Consensus 296 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~~~~~ 370 (485)
..|.++.|-..+++.-+ .....+++.|+++|++.... +- +--...+....+++.+...++
T Consensus 103 E~GspdtAAmaleKAak---------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAK---------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred HhCCcchHHHHHHHHHH---------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 77777766666655422 23456677777777765432 11 112344556667777888888
Q ss_pred HHHHHHHHHHhcc--cccCCch-hHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhh
Q 048394 371 EAALIFNNAKKRA--NASARFF-KSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDG 447 (485)
Q Consensus 371 ~A~~~~~~~~~~~--~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 447 (485)
+|-..|.+-.... +...|+. ..|...|-.+.-..++..|..+++.-.+.+... -.-+..+...|+.+|- .||.++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~-~sed~r~lenLL~ayd-~gD~E~ 245 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFL-KSEDSRSLENLLTAYD-EGDIEE 245 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcccc-ChHHHHHHHHHHHHhc-cCCHHH
Confidence 7777665543321 1001111 124445556667778888888888876653111 1224566777777665 577777
Q ss_pred HHHHH
Q 048394 448 AEEFC 452 (485)
Q Consensus 448 A~~~~ 452 (485)
+.+++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 66655
No 245
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.57 E-value=0.081 Score=41.56 Aligned_cols=61 Identities=21% Similarity=0.319 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhh
Q 048394 252 TYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKS 312 (485)
Q Consensus 252 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 312 (485)
+...++..+...|+++.|...+..+....|.+...|..++.+|...|+...|.++|+.+..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3445777788899999999999999999999999999999999999999999999987743
No 246
>PRK11906 transcriptional regulator; Provisional
Probab=96.56 E-value=0.27 Score=45.51 Aligned_cols=148 Identities=11% Similarity=0.065 Sum_probs=98.0
Q ss_pred HhHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhc---------ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC
Q 048394 230 IDGVERVFYEMCNEC-EDKCRWTTYSNLASIYVKA---------ELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSN 299 (485)
Q Consensus 230 ~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (485)
.+.|..+|.+..... ..|.....|..+..++... .+..+|.+..++..+.++.|+.+...+..+....++
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 467788888887312 3344456665555555432 345667777777777888888888888888888888
Q ss_pred hhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCC-HHhHHHHHHHHHhcCcHHHHHHHHHH
Q 048394 300 LDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYD-MRLADVIIRAYLQKDMYEEAALIFNN 378 (485)
Q Consensus 300 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~ 378 (485)
.+.|...|++....+|....+|......+.-.|+.++|.+.+++..+..+.-- .......++.|+.. ..++|.+++-+
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 88888888888888888666666666666778888888888888766533211 22222233355543 45666666543
No 247
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.54 E-value=0.023 Score=48.11 Aligned_cols=100 Identities=13% Similarity=0.146 Sum_probs=67.1
Q ss_pred HHHHHhhcccCCCHhHHHHHHHHHHh-----cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC------------
Q 048394 131 EKYFNGLSEYAKNRYTYGALLNCYCK-----ELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLG------------ 193 (485)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g------------ 193 (485)
+..|........|-.+|...+..+.. .+.++-....++.|.+-|+..|..+|+.|++.+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34444444334455666666655543 3566767777888888888888888888887765432
Q ss_pred ----CcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 048394 194 ----QPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDI 230 (485)
Q Consensus 194 ----~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 230 (485)
+-+-+++++++|...|+.||..+-..|++++.+.+-.
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2345677777787778888877777777777766643
No 248
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.53 E-value=0.074 Score=50.06 Aligned_cols=152 Identities=19% Similarity=0.183 Sum_probs=99.3
Q ss_pred CcHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHH
Q 048394 58 GSVTGALNAYIMEGKT--VRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFN 135 (485)
Q Consensus 58 ~~~~~~~~~~~~~g~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 135 (485)
++..++++........ .+......+++-+-+.|.++.|+++-.. + ..-.....+.|+++.|.++.+
T Consensus 275 ~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~~A~~~a~ 342 (443)
T PF04053_consen 275 GDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLDIALEIAK 342 (443)
T ss_dssp T-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHHHHHHCC
T ss_pred CChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHHHHHHHHH
Confidence 4555544444322222 2355677788888888888888887443 2 233556668899999888877
Q ss_pred hhcccCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHH
Q 048394 136 GLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNL 215 (485)
Q Consensus 136 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 215 (485)
+.. +...|..|.....+.|+++-|.+.|++..+ |..|+-.|.-.|+.+...++.+.....|-
T Consensus 343 ~~~----~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~----- 404 (443)
T PF04053_consen 343 ELD----DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD----- 404 (443)
T ss_dssp CCS----THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT------
T ss_pred hcC----cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC-----
Confidence 664 677899999999999999999998877553 66777778888888887777777776652
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHH
Q 048394 216 TYIVWMQSYSHLNDIDGVERVFYEM 240 (485)
Q Consensus 216 ~~~~l~~~~~~~~~~~~a~~~~~~~ 240 (485)
++....++...|+.++..+++...
T Consensus 405 -~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 405 -INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 455566666778888777777654
No 249
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.52 E-value=0.036 Score=41.86 Aligned_cols=49 Identities=10% Similarity=0.009 Sum_probs=30.6
Q ss_pred CCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHH
Q 048394 210 ISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLAS 258 (485)
Q Consensus 210 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 258 (485)
..|+..+..+++.+|+..|++..|.++++...+..+++.+..++..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4566666666666666666666666666666665555555555555554
No 250
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.52 E-value=0.081 Score=48.72 Aligned_cols=67 Identities=13% Similarity=-0.091 Sum_probs=56.9
Q ss_pred CccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcH---HHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 048394 211 SLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRW---TTYSNLASIYVKAELFEKAELALKKLEEM 279 (485)
Q Consensus 211 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 279 (485)
+.+...++.+..+|...|++++|+..|++..+ -.+.+. .+|..+..+|...|+.++|+..++++.+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34577889999999999999999999999988 333333 35889999999999999999999998874
No 251
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.47 E-value=0.57 Score=41.46 Aligned_cols=165 Identities=13% Similarity=0.164 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhcccH---HHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHH
Q 048394 251 TTYSNLASIYVKAELF---EKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQA 327 (485)
Q Consensus 251 ~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 327 (485)
.++..++.+|...+.. ++|..+++.+....+..+..+..-++.+.+.++.+.+.+++.+|.....-....+...+..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 3556677777776654 4566666666665555567777778888888889999999999888765444444444444
Q ss_pred H---HhcCChhHHHHHHHHHHHccCCCCHH-hH-HHHHHH-HH--hcC------cHHHHHHHHHHHHhc-ccccCCchhH
Q 048394 328 L---AKLNAIDILKQCFEEWESRCSSYDMR-LA-DVIIRA-YL--QKD------MYEEAALIFNNAKKR-ANASARFFKS 392 (485)
Q Consensus 328 ~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~-~~l~~~-~~--~~~------~~~~A~~~~~~~~~~-~~~~~p~~~~ 392 (485)
+ .. .....+...+..+....+.|... .. ..++.. +. +.+ ..+....+++...+. +. +.+..+
T Consensus 165 i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~--~ls~~~ 241 (278)
T PF08631_consen 165 IKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGK--QLSAEA 241 (278)
T ss_pred HHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcC--CCCHHH
Confidence 4 33 33456666666665554554443 11 111111 11 111 144455555543332 21 223223
Q ss_pred HH---HH----HHHHHhcccHHHHHHHHHHHHH
Q 048394 393 RE---SF----MIYYLRSRQLDLALNEMEAALS 418 (485)
Q Consensus 393 ~~---~l----~~~~~~~g~~~~A~~~~~~~~~ 418 (485)
-. ++ ...+.+.++++.|.++|+-...
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 22 22 3446789999999999987653
No 252
>PRK11906 transcriptional regulator; Provisional
Probab=96.44 E-value=0.41 Score=44.38 Aligned_cols=146 Identities=8% Similarity=0.040 Sum_probs=104.8
Q ss_pred cHHHHHHHHHHHH---hcCCCChHHHHHHHHHHHhc---------CChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcC
Q 048394 265 LFEKAELALKKLE---EMKPRDRKAYHFLISLYCNT---------SNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLN 332 (485)
Q Consensus 265 ~~~~A~~~~~~~~---~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 332 (485)
+.+.|..+|.+.. ...|.....|..+..++... .+..+|.++-++..+.++.|..+...+..+..-.+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4678889999999 57776777777777665532 23456777888888888888888888888888888
Q ss_pred ChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchh---HHHHHHHHHHhcccHHHH
Q 048394 333 AIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFK---SRESFMIYYLRSRQLDLA 409 (485)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A 409 (485)
+.+.|...|++....++. ...+|....-.+.-+|+.++|.+.+++..+. .|... .....++.|+.. ..+.|
T Consensus 353 ~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL----sP~~~~~~~~~~~~~~~~~~-~~~~~ 426 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQL----EPRRRKAVVIKECVDMYVPN-PLKNN 426 (458)
T ss_pred chhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc----CchhhHHHHHHHHHHHHcCC-chhhh
Confidence 899999999999887654 4556655666667789999999999987766 34332 222333344444 45777
Q ss_pred HHHHHHH
Q 048394 410 LNEMEAA 416 (485)
Q Consensus 410 ~~~~~~~ 416 (485)
+.+|-+-
T Consensus 427 ~~~~~~~ 433 (458)
T PRK11906 427 IKLYYKE 433 (458)
T ss_pred HHHHhhc
Confidence 7776553
No 253
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.44 E-value=0.37 Score=39.48 Aligned_cols=78 Identities=14% Similarity=-0.005 Sum_probs=42.5
Q ss_pred HHHHHHhhcccCCC-HhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHc
Q 048394 130 AEKYFNGLSEYAKN-RYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQR 208 (485)
Q Consensus 130 a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 208 (485)
|+-=|.+...+.|+ +.+||-|.--+...|+++.|.+.|+...+.++.-+-...|.-| ++.-.|++.-|.+-+...-+.
T Consensus 84 AR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 84 ARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhc
Confidence 33334444343333 4567777777777778888887777777765432211122222 233456777776665555443
No 254
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.43 E-value=0.3 Score=37.96 Aligned_cols=125 Identities=10% Similarity=0.113 Sum_probs=66.6
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 048394 148 GALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHL 227 (485)
Q Consensus 148 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 227 (485)
..++..+...+.......+++.+...+. .+...++.++..|++.+. .+..+.+.. ..+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3455556666667777777777666653 355566777777765432 333333331 12223334456666666
Q ss_pred CCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhc-ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 048394 228 NDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKA-ELFEKAELALKKLEEMKPRDRKAYHFLISLYC 295 (485)
Q Consensus 228 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 295 (485)
+.++++.-++..+.. +...+..+... ++++.|.+.+.+ ..++..|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 666666666655433 11123333333 566666666654 224556666665554
No 255
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.42 E-value=1.4 Score=45.56 Aligned_cols=25 Identities=32% Similarity=0.317 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Q 048394 77 DMLEYCVRSLRKFGRYRHALEVIEW 101 (485)
Q Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~ 101 (485)
......++-++..+++.+|+++..+
T Consensus 678 ~lVLa~vr~~l~~~~y~~AF~~~Rk 702 (1265)
T KOG1920|consen 678 ILVLAKVRTLLDRLRYKEAFEVMRK 702 (1265)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556677777777655443
No 256
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.41 E-value=0.76 Score=42.20 Aligned_cols=195 Identities=11% Similarity=0.030 Sum_probs=110.6
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC-C--h---hhHHHHHHHHHh----cCChhHHHHHHHHHHHccCCCCH
Q 048394 284 RKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP-T--N---TSYLVLLQALAK----LNAIDILKQCFEEWESRCSSYDM 353 (485)
Q Consensus 284 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~--~---~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 353 (485)
..++..++....+.++...|.+.+.-+..-.|. . . .+-..+-+..+. .-+...-+.+|..+....+. ..
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rq 376 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQ 376 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HH
Confidence 456777777777778777777777766554443 1 0 111223333331 11222334455555544332 11
Q ss_pred HhHHHH---HHHHHhcCc-HHHHHHHHHHHHhcccccCCchhH----HHHHHHHHH---hcccHHHHHHHHHHHHHHhhh
Q 048394 354 RLADVI---IRAYLQKDM-YEEAALIFNNAKKRANASARFFKS----RESFMIYYL---RSRQLDLALNEMEAALSEAKQ 422 (485)
Q Consensus 354 ~~~~~l---~~~~~~~~~-~~~A~~~~~~~~~~~~~~~p~~~~----~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~ 422 (485)
.....| ..-+.+.|. -++|..+++.+++-. .-|... +..+=.+|. ....+.+-+.+-+-+.+.|..
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft---~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT---NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 112222 233555555 677888888777652 222222 222223332 234556666665556666665
Q ss_pred cCCCccHHHHHHHHH--HHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcchh
Q 048394 423 FHWRPMQVTVDTFFR--FFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDM 483 (485)
Q Consensus 423 ~~~~~~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 483 (485)
+-...+...-+.|.. .+..+|++.++.-.-..+.+..| ++.+|..++-++....++++|.
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~ 515 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAW 515 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHH
Confidence 544445555555553 45678888888777777777766 8888888888888888888875
No 257
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.35 E-value=0.1 Score=39.42 Aligned_cols=52 Identities=4% Similarity=-0.186 Sum_probs=42.6
Q ss_pred CCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhh
Q 048394 387 ARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEE 441 (485)
Q Consensus 387 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 441 (485)
.|+..+..+++.+|+..|++..|+++++...+.- +++.+..+|..|+.-+..
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y---~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY---PIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHH
Confidence 7888889999999999999999999999988874 366678889888865443
No 258
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.34 E-value=0.41 Score=44.52 Aligned_cols=150 Identities=13% Similarity=0.057 Sum_probs=76.5
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChh
Q 048394 256 LASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAID 335 (485)
Q Consensus 256 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 335 (485)
++.-.-+..+...-.+.-+++.+..|.....|..|.+- ......++.+++++..+.+.... .+....+
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~l----------g~s~~~~ 241 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASL----------GKSQFLQ 241 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhh----------chhhhhh
Confidence 44444556666666666666666666555666555432 23446677777777654433200 0000000
Q ss_pred HHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHH
Q 048394 336 ILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEA 415 (485)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 415 (485)
..-..++.+......+-..+-..+..+..+.|+.++|.+.+++|.+... ...+......|+.++...+.+.++..++.+
T Consensus 242 ~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p-~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 242 HHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP-NLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred cccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC-ccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 0001111122222222233334455566667777777777777765421 012233455667777777777777777777
Q ss_pred HHH
Q 048394 416 ALS 418 (485)
Q Consensus 416 ~~~ 418 (485)
--+
T Consensus 321 YdD 323 (539)
T PF04184_consen 321 YDD 323 (539)
T ss_pred hcc
Confidence 543
No 259
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.25 E-value=0.13 Score=38.12 Aligned_cols=93 Identities=14% Similarity=-0.005 Sum_probs=58.3
Q ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHH---HHHHHHHH
Q 048394 362 AYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQV---TVDTFFRF 438 (485)
Q Consensus 362 ~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~ 438 (485)
+....|+.+.|++.|.+.+..- +.....||.-..++.-.|+.++|++-+++.++.. -..... .|..-...
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~---P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA---PERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc---ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----CccchHHHHHHHHHHHH
Confidence 3556677777777777766542 3345667777777777777777777777777653 111111 22222345
Q ss_pred HhhcCChhhHHHHHHHHhhcCCC
Q 048394 439 FEEEKDVDGAEEFCKVLKSLNCL 461 (485)
Q Consensus 439 ~~~~~~~~~A~~~~~~~~~~~~~ 461 (485)
|...|+.+.|..-|+.+-+++.+
T Consensus 125 yRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 125 YRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHhCchHHHHHhHHHHHHhCCH
Confidence 66677777777777777776654
No 260
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.23 E-value=0.81 Score=40.71 Aligned_cols=55 Identities=20% Similarity=0.128 Sum_probs=25.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc----cCCC-CHHhHHHHHHHHHhcCcHHHHHHHHHHH
Q 048394 325 LQALAKLNAIDILKQCFEEWESR----CSSY-DMRLADVIIRAYLQKDMYEEAALIFNNA 379 (485)
Q Consensus 325 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 379 (485)
.-++...|.+-.|.+.-++..+. |-.+ .......+.+.|...|+.+.|+.-|++.
T Consensus 213 aValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 213 AVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 33444555555555555544332 2111 1222334555566666666666555543
No 261
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.19 E-value=0.25 Score=43.29 Aligned_cols=117 Identities=8% Similarity=-0.042 Sum_probs=61.6
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccH----HHHHHHHHHHHhcCCHh
Q 048394 156 KELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDN----LTYIVWMQSYSHLNDID 231 (485)
Q Consensus 156 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~ 231 (485)
-.|+..+|-..++++++.-+ .|..+++..=.+|.-.|+.+.-...++++... ..||. ..-..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~P-tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYP-TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhCc-hhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34555555555666555432 25555555555666666666666666555543 12222 22222233444556666
Q ss_pred HHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 048394 232 GVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKL 276 (485)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 276 (485)
+|++.-++..+ -++.|...-.+....+-..|++.++.+...+-
T Consensus 193 dAEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 193 DAEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hHHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 66666666555 44445555555555555566666666555543
No 262
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.19 E-value=0.18 Score=37.44 Aligned_cols=87 Identities=11% Similarity=-0.042 Sum_probs=38.0
Q ss_pred HhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC-C---hhhHHHHHHHHHhcCChhH
Q 048394 261 VKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP-T---NTSYLVLLQALAKLNAIDI 336 (485)
Q Consensus 261 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~---~~~~~~l~~~~~~~~~~~~ 336 (485)
...|+.+.|++.|.+.....|.....||.-..++.-.|+.++|++=+++..+...+ . ..+|..-...|...|+-+.
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~ 133 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDA 133 (175)
T ss_pred HhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHH
Confidence 34444455555544444444444444555444544445554444444444332211 1 1222222333444455555
Q ss_pred HHHHHHHHHHc
Q 048394 337 LKQCFEEWESR 347 (485)
Q Consensus 337 a~~~~~~~~~~ 347 (485)
|..=|....+.
T Consensus 134 AR~DFe~AA~L 144 (175)
T KOG4555|consen 134 ARADFEAAAQL 144 (175)
T ss_pred HHHhHHHHHHh
Confidence 55544444443
No 263
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.10 E-value=0.018 Score=34.15 Aligned_cols=39 Identities=26% Similarity=0.375 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHH
Q 048394 253 YSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLI 291 (485)
Q Consensus 253 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 291 (485)
+..+...|...|++++|.++|+++.+..|.+...+..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 344555666666666666666666665555555554443
No 264
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.10 E-value=1.7 Score=43.24 Aligned_cols=15 Identities=13% Similarity=0.195 Sum_probs=7.9
Q ss_pred hCCCcccHHHHHHHH
Q 048394 191 RLGQPEKVRPLVNQM 205 (485)
Q Consensus 191 ~~g~~~~a~~~~~~~ 205 (485)
..+++++|++.+..+
T Consensus 502 ~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 502 DLHNYEEALRYISSL 516 (933)
T ss_pred HhcCHHHHHHHHhcC
Confidence 345555555555544
No 265
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.83 Score=39.57 Aligned_cols=146 Identities=14% Similarity=0.103 Sum_probs=89.8
Q ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC-ChhhHHHHHHHHHhcCChh
Q 048394 257 ASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP-TNTSYLVLLQALAKLNAID 335 (485)
Q Consensus 257 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 335 (485)
.......|++.+|...|+......+.+...-..++.+|...|+.+.|..++..+...... .......-+..+.+.....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 334556788888888888887766667777778888888888888888888877554443 2222233344444444444
Q ss_pred HHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhccc
Q 048394 336 ILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQ 405 (485)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 405 (485)
+...+-...-.. +. |...--.+...+...|+.++|.+.+-.+.+++.. .-|...-..|+..+.-.|.
T Consensus 221 ~~~~l~~~~aad-Pd-d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~-~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 221 EIQDLQRRLAAD-PD-DVEAALALADQLHLVGRNEAALEHLLALLRRDRG-FEDGEARKTLLELFEAFGP 287 (304)
T ss_pred CHHHHHHHHHhC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-ccCcHHHHHHHHHHHhcCC
Confidence 444444444332 22 5555566777788888888888777666654320 3333444555555555553
No 266
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.84 E-value=0.57 Score=44.25 Aligned_cols=129 Identities=12% Similarity=0.002 Sum_probs=59.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 048394 217 YIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCN 296 (485)
Q Consensus 217 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (485)
.+.++.-+.+.|..+.|+++...-.. -.....+.|+++.|.++.++ .++...|..|.+....
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLDIALEIAKE-----LDDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHH
Confidence 44455555555555555544332221 33444455555555554432 2245556666666666
Q ss_pred cCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHH
Q 048394 297 TSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIF 376 (485)
Q Consensus 297 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 376 (485)
.|+++-|...|.+.. -+..|+-.|.-.|+.+...++.+.....|- +|....++.-.|+.++..+++
T Consensus 360 ~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 360 QGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp TTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred cCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHH
Confidence 666666666555532 233444445555555555555444443321 233333344445555555544
Q ss_pred H
Q 048394 377 N 377 (485)
Q Consensus 377 ~ 377 (485)
.
T Consensus 426 ~ 426 (443)
T PF04053_consen 426 I 426 (443)
T ss_dssp H
T ss_pred H
Confidence 3
No 267
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.83 E-value=0.74 Score=42.94 Aligned_cols=61 Identities=11% Similarity=0.177 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 048394 218 IVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEE 278 (485)
Q Consensus 218 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 278 (485)
..+..++-+.|+.++|++.++++.+.........+...|+.++...+.+.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3355556667777777777777765222222344556677777777777777777777554
No 268
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.71 E-value=0.4 Score=36.72 Aligned_cols=55 Identities=13% Similarity=0.133 Sum_probs=25.4
Q ss_pred HHhcCChhhHHHHHHHhhhcCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcc
Q 048394 294 YCNTSNLDAVNRVWGILKSTFPP---TNTSYLVLLQALAKLNAIDILKQCFEEWESRC 348 (485)
Q Consensus 294 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 348 (485)
..+.|++++|.+.|+.+....|. ...+...++.+|.+.++++.|...++..++..
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 33444555555555544444333 33333444444445555555555554444443
No 269
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.68 E-value=0.62 Score=34.87 Aligned_cols=60 Identities=20% Similarity=0.216 Sum_probs=28.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q 048394 324 LLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRAN 384 (485)
Q Consensus 324 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 384 (485)
.+..+...|+-|+-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.++-+.|+
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344455555555555555555442 233555555555566666666666666665555553
No 270
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.65 E-value=0.76 Score=35.69 Aligned_cols=126 Identities=13% Similarity=0.088 Sum_probs=72.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcC
Q 048394 79 LEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKEL 158 (485)
Q Consensus 79 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~ 158 (485)
...++..+...+.+......++.+...+ ..+...++.++..|++. +.....+.+.. ..+.......+..|.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~-~~~~ll~~l~~----~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY-DPQKEIERLDN----KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH-CHHHHHHHHHh----ccccCCHHHHHHHHHHcC
Confidence 3455666666677788888888877666 35666777778877765 33444455442 123334445666677777
Q ss_pred cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhC-CCcccHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 048394 159 MTERALALFEKMDELKFLGNTVAFNNLSTMYLRL-GQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYS 225 (485)
Q Consensus 159 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 225 (485)
.++++..++.++.. |...+..+... ++++.|.+++.+- .+...|..++..+.
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 77777777766532 22233333333 6666666665541 14445655555443
No 271
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.58 E-value=0.18 Score=40.58 Aligned_cols=98 Identities=13% Similarity=0.091 Sum_probs=56.5
Q ss_pred HHhcCcHHHHHHHHHHHHhcccccCCch------hHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q 048394 363 YLQKDMYEEAALIFNNAKKRANASARFF------KSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFF 436 (485)
Q Consensus 363 ~~~~~~~~~A~~~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~ 436 (485)
+...|++++|..-|...++. .|.. ..|..-..++.+.+.++.|+.-..+.+..+ +.....+..-.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~----cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-----pty~kAl~RRA 175 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES----CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-----PTYEKALERRA 175 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh----CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-----chhHHHHHHHH
Confidence 45567777777777766654 2221 223333445566777777777777776653 21222333334
Q ss_pred HHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHH
Q 048394 437 RFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLL 469 (485)
Q Consensus 437 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 469 (485)
.+|.+...+++|+.-|+++.+..|....+-...
T Consensus 176 eayek~ek~eealeDyKki~E~dPs~~ear~~i 208 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDPSRREAREAI 208 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 566666777777777777777776554444333
No 272
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.39 E-value=1 Score=35.56 Aligned_cols=130 Identities=15% Similarity=0.142 Sum_probs=85.3
Q ss_pred CHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHH-----HHHHHhCCCcccHHHHHHHHHHcCCCccHHHH
Q 048394 143 NRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNL-----STMYLRLGQPEKVRPLVNQMKQRNISLDNLTY 217 (485)
Q Consensus 143 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l-----~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 217 (485)
+...|..-+. +.+.+..++|+.-|..+.+.|.. .|-.| .......|+...|...|+++-...-.|...-=
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g----~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd 132 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYG----SYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRD 132 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCC----cchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhH
Confidence 3445555444 45678888888888888877655 33322 23456678888888888888765444443311
Q ss_pred HHHH---HHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 048394 218 IVWM---QSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEE 278 (485)
Q Consensus 218 ~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 278 (485)
..-+ -.+...|.++......+.+.. .+.+.-...-..|.-+-.+.|++.+|...|..+..
T Consensus 133 ~ARlraa~lLvD~gsy~dV~srvepLa~-d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 133 LARLRAAYLLVDNGSYDDVSSRVEPLAG-DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHHHhccccHHHHHHHhhhccC-CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 1111 234567888888777777765 55666666667777777788888888888888766
No 273
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.39 E-value=2.7 Score=40.28 Aligned_cols=364 Identities=10% Similarity=0.040 Sum_probs=200.9
Q ss_pred CCCcHHHHHHHHHHh--CCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHhC-CCC-CChhhHHHHHHHHHhhCCHHHH
Q 048394 56 TGGSVTGALNAYIME--GKTVRKDMLEYCVRSLR-KFGRYRHALEVIEWMESR-KMH-FSYTDFAVYLDLTAKTNGIAAA 130 (485)
Q Consensus 56 ~~~~~~~~~~~~~~~--g~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a 130 (485)
+-+.+......+.+. |++.+...+......+. ..|+.+...+.|+..... |.. .+...|-..|..-..++++...
T Consensus 91 klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v 170 (577)
T KOG1258|consen 91 KLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRV 170 (577)
T ss_pred HhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHH
Confidence 445555555555542 66666666666555444 457888888888887553 322 2445677788877888999999
Q ss_pred HHHHHhhcccCCCHhHHHHHHHHHH---hc------CcHHHHHHHHHHHHhC---C-CCCChhhHHHHHHHHHh-CCCcc
Q 048394 131 EKYFNGLSEYAKNRYTYGALLNCYC---KE------LMTERALALFEKMDEL---K-FLGNTVAFNNLSTMYLR-LGQPE 196 (485)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~li~~~~---~~------~~~~~A~~~~~~m~~~---~-~~p~~~~~~~l~~~~~~-~g~~~ 196 (485)
..+++++.+. ....|+..-.-|. +. ...+++.++-...... . ..+....+..-+.--.. .+..+
T Consensus 171 ~~iyeRilei--P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~ 248 (577)
T KOG1258|consen 171 ANIYERILEI--PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLT 248 (577)
T ss_pred HHHHHHHHhh--hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhh
Confidence 9999999872 1223333322222 11 1223332222221110 0 00011111111111000 11111
Q ss_pred cHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhc------cCCCCcHHHHHHHHHHHHhcccHHHHH
Q 048394 197 KVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNE------CEDKCRWTTYSNLASIYVKAELFEKAE 270 (485)
Q Consensus 197 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~ 270 (485)
++.....+.. ..--..+...-...+....|+.-.+. .-.+++..+|..-+..-...|+.+.+.
T Consensus 249 ~~~~~l~~~~-----------~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~ 317 (577)
T KOG1258|consen 249 EEKTILKRIV-----------SIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVF 317 (577)
T ss_pred HHHHHHHHHH-----------HHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHH
Confidence 1111111111 11111222222333333344433331 233445667777888888899999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHH-HhcCChhHHHHHHHHHHHccC
Q 048394 271 LALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQAL-AKLNAIDILKQCFEEWESRCS 349 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~ 349 (485)
-.|++..--...-...|-..+.-....|+.+.|..++....+-..++......+-..+ -..|+++.|..+++.+.+.-
T Consensus 318 ~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~- 396 (577)
T KOG1258|consen 318 ILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY- 396 (577)
T ss_pred HHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-
Confidence 9998876533345667777777777779999999888887776666333333333333 34679999999999998764
Q ss_pred CCCHH-hHHHHHHHHHhcCcHHHHH---HHHHHHHhcccccCCchhHHHHHHHHH-----HhcccHHHHHHHHHHHHHHh
Q 048394 350 SYDMR-LADVIIRAYLQKDMYEEAA---LIFNNAKKRANASARFFKSRESFMIYY-----LRSRQLDLALNEMEAALSEA 420 (485)
Q Consensus 350 ~~~~~-~~~~l~~~~~~~~~~~~A~---~~~~~~~~~~~~~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~ 420 (485)
|+.. .-..-+....+.|+.+.+. .++...... .-+......+.--+ .-.++.+.|..++.++.+.
T Consensus 397 -pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~----~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~- 470 (577)
T KOG1258|consen 397 -PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG----KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI- 470 (577)
T ss_pred -CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc----ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-
Confidence 4422 2222334455678888777 333333322 22222333332222 3367889999999999887
Q ss_pred hhcCCCccHHHHHHHHHHHhhcC
Q 048394 421 KQFHWRPMQVTVDTFFRFFEEEK 443 (485)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~ 443 (485)
.+++...|..++..+...+
T Consensus 471 ----~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 471 ----LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred ----CCccHHHHHHHHHHHHhCC
Confidence 6777788888887665554
No 274
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.38 E-value=1 Score=35.54 Aligned_cols=122 Identities=14% Similarity=0.035 Sum_probs=55.1
Q ss_pred HhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-CChH---HHHHHHHHHHhcCCh
Q 048394 225 SHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKP-RDRK---AYHFLISLYCNTSNL 300 (485)
Q Consensus 225 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~---~~~~l~~~~~~~~~~ 300 (485)
++.+..++|+.-|..+.+.+-.....-..-.......+.|+-..|...|+++-...+ |... .-..-.-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 345555555655655555221111112222233344455566666666655544111 1111 111112233455555
Q ss_pred hhHHHHHHHhhhcCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048394 301 DAVNRVWGILKSTFPP-TNTSYLVLLQALAKLNAIDILKQCFEEWES 346 (485)
Q Consensus 301 ~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 346 (485)
+....-.+.+...+.+ -...-..|.-+-.+.|++..|.+.|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5555555544443333 334444555555556666666666665554
No 275
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.25 E-value=0.76 Score=40.81 Aligned_cols=129 Identities=16% Similarity=0.225 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh--h----CCHHHHHHHHHhhccc-----CCCHhHHHHHHHHHHhcCcH
Q 048394 92 YRHALEVIEWMESRKMHFSYTDFAVYLDLTAK--T----NGIAAAEKYFNGLSEY-----AKNRYTYGALLNCYCKELMT 160 (485)
Q Consensus 92 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~a~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~ 160 (485)
+++.+.+++.|.+.|..-+..+|.+..-.... . .....|.++|+.|++. .++...+..|+.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44567788899999988887777654433332 1 2356788999999882 3455566666554 33433
Q ss_pred ----HHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhCCC--cccHHHHHHHHHHcCCCccHHHHHHHHH
Q 048394 161 ----ERALALFEKMDELKFLGNTV--AFNNLSTMYLRLGQ--PEKVRPLVNQMKQRNISLDNLTYIVWMQ 222 (485)
Q Consensus 161 ----~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 222 (485)
+.+..+|+.+...|...+.. ....++........ ..++.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 56778888888877765432 22222222222112 3477888999999999888877765543
No 276
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.15 E-value=0.36 Score=41.22 Aligned_cols=101 Identities=13% Similarity=0.158 Sum_probs=69.1
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHHHHH
Q 048394 89 FGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFE 168 (485)
Q Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 168 (485)
.+..+-....+..|.+.|+.-|..+|+.|++.+-+..- .|.. ++....--|- .+-+-++++++
T Consensus 85 R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf--------------iP~n-vfQ~~F~HYP--~QQ~C~I~vLe 147 (406)
T KOG3941|consen 85 RTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF--------------IPQN-VFQKVFLHYP--QQQNCAIKVLE 147 (406)
T ss_pred cchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc--------------ccHH-HHHHHHhhCc--hhhhHHHHHHH
Confidence 35566667778889999999999999999887654221 1211 1111111222 33456889999
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhCCCc-ccHHHHHHHHH
Q 048394 169 KMDELKFLGNTVAFNNLSTMYLRLGQP-EKVRPLVNQMK 206 (485)
Q Consensus 169 ~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 206 (485)
+|...|+.||..+-..|++++.+.+-. .+..++.-.|.
T Consensus 148 qME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 148 QMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 999999999999999999999887754 33444444443
No 277
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.12 E-value=1.8 Score=36.85 Aligned_cols=209 Identities=10% Similarity=0.081 Sum_probs=109.8
Q ss_pred CCCCCChhhHHHHHHH-HHhCCCcccHHHHHHHHHHcCCCccH---HHHHHHHHHHHhcCCHhHHHHHHHHHHhc----c
Q 048394 173 LKFLGNTVAFNNLSTM-YLRLGQPEKVRPLVNQMKQRNISLDN---LTYIVWMQSYSHLNDIDGVERVFYEMCNE----C 244 (485)
Q Consensus 173 ~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~ 244 (485)
.+..||+..-|..-.. -.+...+++|+.-|++..+..-.... .....++..+.+.|++++....+.++..- .
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 3455666554432221 12344677888888877764211122 22344567777888888888777777540 0
Q ss_pred CCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHh--cCCCChH----HHHHHHHHHHhcCChhhHHHHHHHhhhcCCC--
Q 048394 245 EDKCRWTTYSNLASIYVKAELFEKAELALKKLEE--MKPRDRK----AYHFLISLYCNTSNLDAVNRVWGILKSTFPP-- 316 (485)
Q Consensus 245 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-- 316 (485)
.-..+....|++++.-..+.+.+--...++.-.+ ....+.. |-..+...|...+.+.....+++++......
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 1223444556666655555555555555554333 1222222 2345666666777777777777766654222
Q ss_pred ---C-------hhhHHHHHHHHHhcCChhHHHHHHHHHHHc-cCCCCHHhHHHHHHH-----HHhcCcHHHHHH-HHHHH
Q 048394 317 ---T-------NTSYLVLLQALAKLNAIDILKQCFEEWESR-CSSYDMRLADVIIRA-----YLQKDMYEEAAL-IFNNA 379 (485)
Q Consensus 317 ---~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~-----~~~~~~~~~A~~-~~~~~ 379 (485)
+ ...|..=|..|...++-.....+|++.... .--|.+.... +|+- ..+.|++++|.. +|+..
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHH
Confidence 1 234555566666666666666666654332 2233444333 3332 335566666654 34444
Q ss_pred Hhc
Q 048394 380 KKR 382 (485)
Q Consensus 380 ~~~ 382 (485)
+..
T Consensus 259 KNY 261 (440)
T KOG1464|consen 259 KNY 261 (440)
T ss_pred hcc
Confidence 433
No 278
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.09 E-value=4.2 Score=40.81 Aligned_cols=404 Identities=13% Similarity=0.068 Sum_probs=200.8
Q ss_pred HHHHHHHHHHH-HcCChHHHHHHHHHHHhCCCCCChhh-----HHHHHHHHHhhCCHHHHHHHHHhhcc--cC--CC--H
Q 048394 77 DMLEYCVRSLR-KFGRYRHALEVIEWMESRKMHFSYTD-----FAVYLDLTAKTNGIAAAEKYFNGLSE--YA--KN--R 144 (485)
Q Consensus 77 ~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~g~~~~a~~~~~~~~~--~~--~~--~ 144 (485)
.+...+...+. ...+++.|...+++.....-.++... ...++..+.+.+... |...+++..+ .. -+ .
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 34455566665 67899999999998744332233221 234456666655555 8888888766 11 11 2
Q ss_pred hHHHHH-HHHHHhcCcHHHHHHHHHHHHhCC---CCCChhhHHHHHHHH--HhCCCcccHHHHHHHHHHcCC--------
Q 048394 145 YTYGAL-LNCYCKELMTERALALFEKMDELK---FLGNTVAFNNLSTMY--LRLGQPEKVRPLVNQMKQRNI-------- 210 (485)
Q Consensus 145 ~~~~~l-i~~~~~~~~~~~A~~~~~~m~~~~---~~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~-------- 210 (485)
..|.-+ +..+...+++..|.+.++.+...- ..|-..++-.++.+. .+.+..+.+.+.++++.....
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~ 218 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV 218 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC
Confidence 233333 233333479999999998886532 222333444444443 345667778888887744322
Q ss_pred -CccHHHHHHHHHHH--HhcCCHhHHHHHHHHHHh---ccCCCC--------------------------cHH-------
Q 048394 211 -SLDNLTYIVWMQSY--SHLNDIDGVERVFYEMCN---ECEDKC--------------------------RWT------- 251 (485)
Q Consensus 211 -~p~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~---~~~~~~--------------------------~~~------- 251 (485)
.|...+|..+++.+ ...|+++.+...++++.+ .....+ ...
T Consensus 219 ~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~ 298 (608)
T PF10345_consen 219 HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEE 298 (608)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHH
Confidence 34566777777654 456776666666554432 011110 000
Q ss_pred --HHHHHHH--HHHhcccHHHHHHHHHHHHh-----c-----CCC-------ChHHHHHHHH---------HHHhcCChh
Q 048394 252 --TYSNLAS--IYVKAELFEKAELALKKLEE-----M-----KPR-------DRKAYHFLIS---------LYCNTSNLD 301 (485)
Q Consensus 252 --~~~~l~~--~~~~~~~~~~A~~~~~~~~~-----~-----~~~-------~~~~~~~l~~---------~~~~~~~~~ 301 (485)
++.-++. .++..+..++|.+.+++..+ . .++ +...|...+. ..+-.+++.
T Consensus 299 l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~ 378 (608)
T PF10345_consen 299 LYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWS 378 (608)
T ss_pred HHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHH
Confidence 0111111 22334444456555555443 1 111 1122222222 223578898
Q ss_pred hHHHHHHHhhhcCCC-------ChhhHHHHH--HHHHhcCChhHHHHHHH--------HHHHccCCCCHHhHHHH--HHH
Q 048394 302 AVNRVWGILKSTFPP-------TNTSYLVLL--QALAKLNAIDILKQCFE--------EWESRCSSYDMRLADVI--IRA 362 (485)
Q Consensus 302 ~a~~~~~~~~~~~~~-------~~~~~~~l~--~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l--~~~ 362 (485)
.|...++.+...... ....+..++ -.+-..|+.+.|...|. .....+...+..++..+ +-.
T Consensus 379 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I 458 (608)
T PF10345_consen 379 KATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAII 458 (608)
T ss_pred HHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHH
Confidence 999999988764322 122333333 33345799999999998 44455555444444321 111
Q ss_pred HH--hcCcHHH--HHHHHHHHHhc-ccccCC--chhHHHHH-HHHHHhc--ccHHHHHHHHHHHHHHh-hhcCCCccHHH
Q 048394 363 YL--QKDMYEE--AALIFNNAKKR-ANASAR--FFKSRESF-MIYYLRS--RQLDLALNEMEAALSEA-KQFHWRPMQVT 431 (485)
Q Consensus 363 ~~--~~~~~~~--A~~~~~~~~~~-~~~~~p--~~~~~~~l-~~~~~~~--g~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 431 (485)
+. .....++ +..+++.+... .- .| +..++..+ +.++... -...++...+.+.++.. ...+..--...
T Consensus 459 ~~~~~~~~~~~~~~~~l~~~i~p~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~ 536 (608)
T PF10345_consen 459 LQYESSRDDSESELNELLEQIEPLCSN--SPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAI 536 (608)
T ss_pred hHhhcccchhhhHHHHHHHhcCccccC--CccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHH
Confidence 22 2222333 66777665442 11 22 22333333 3333211 12235555555444432 11101111122
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHhhcC---CC-CHHHHHH-----HHHHHHHhCCCcchh
Q 048394 432 VDTFFRFFEEEKDVDGAEEFCKVLKSLN---CL-DFSAYSL-----LIKTYIAAGKLASDM 483 (485)
Q Consensus 432 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~-~~~~~~~-----l~~~~~~~g~~~~A~ 483 (485)
...++..-.-.|+..+..+......... |+ ....|.. +.+.|...|+.++|-
T Consensus 537 ~L~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~ 597 (608)
T PF10345_consen 537 LLNLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAE 597 (608)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 2223332222688887666665554432 22 3445533 444566678877763
No 279
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.07 E-value=0.37 Score=41.83 Aligned_cols=83 Identities=8% Similarity=0.000 Sum_probs=65.1
Q ss_pred HHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHH-HhhhcCCCccHHH
Q 048394 353 MRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALS-EAKQFHWRPMQVT 431 (485)
Q Consensus 353 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~ 431 (485)
..++..++..+...|+++.+...++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+ .....++.|...+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d---p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~ 229 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD---PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPEL 229 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC---ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHH
Confidence 3456678888888888999999888888876 56777888889999999999999988888877 3334467788777
Q ss_pred HHHHHHH
Q 048394 432 VDTFFRF 438 (485)
Q Consensus 432 ~~~l~~~ 438 (485)
...+...
T Consensus 230 ~~~y~~~ 236 (280)
T COG3629 230 RALYEEI 236 (280)
T ss_pred HHHHHHH
Confidence 7777665
No 280
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.05 E-value=5.2 Score=41.75 Aligned_cols=136 Identities=13% Similarity=0.067 Sum_probs=71.2
Q ss_pred cccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 048394 263 AELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFE 342 (485)
Q Consensus 263 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 342 (485)
.++++.|+.-+..+. ...|.-.++.--+.|.+.+|+.++..-.+. -...|......+...+.+++|--.|+
T Consensus 893 L~ry~~AL~hLs~~~------~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~---~k~i~~~ya~hL~~~~~~~~Aal~Ye 963 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG------ETYFPECKNYIKKHGLYDEALALYKPDSEK---QKVIYEAYADHLREELMSDEAALMYE 963 (1265)
T ss_pred HHHHHHHHHHHHHcC------ccccHHHHHHHHhcccchhhhheeccCHHH---HHHHHHHHHHHHHHhccccHHHHHHH
Confidence 355666666555532 234444555555666666666655321100 23344445555556666666665555
Q ss_pred HHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 048394 343 EWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSE 419 (485)
Q Consensus 343 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 419 (485)
..-+. ...+.+|..+|+|.+|+.+..++..... --..+-..|+.-+...++.-+|-++..+..+.
T Consensus 964 ~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~d---e~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen 964 RCGKL---------EKALKAYKECGDWREALSLAAQLSEGKD---ELVILAEELVSRLVEQRKHYEAAKILLEYLSD 1028 (1265)
T ss_pred HhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHH---HHHHHHHHHHHHHHHcccchhHHHHHHHHhcC
Confidence 43221 2245566677777777777666543210 00011234555666677777777776666543
No 281
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.05 E-value=3 Score=39.02 Aligned_cols=89 Identities=9% Similarity=-0.021 Sum_probs=48.5
Q ss_pred CCchhHH-HHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH--hhcCChhhHHHHHHHHhhcCCCCH
Q 048394 387 ARFFKSR-ESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFF--EEEKDVDGAEEFCKVLKSLNCLDF 463 (485)
Q Consensus 387 ~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~ 463 (485)
.|+..++ +.++.-+.+.|-..+|...+..+... .+|+...|..++..- ...-+...+.++|+.+......++
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-----pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~ 530 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-----PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADS 530 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-----CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCCh
Confidence 3444443 33445555666666666666666655 445566666555322 112235556666666665544666
Q ss_pred HHHHHHHHHHHHhCCCc
Q 048394 464 SAYSLLIKTYIAAGKLA 480 (485)
Q Consensus 464 ~~~~~l~~~~~~~g~~~ 480 (485)
..|......-...|..+
T Consensus 531 ~lw~~y~~~e~~~g~~e 547 (568)
T KOG2396|consen 531 DLWMDYMKEELPLGRPE 547 (568)
T ss_pred HHHHHHHHhhccCCCcc
Confidence 66666655555555444
No 282
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.91 E-value=0.1 Score=42.02 Aligned_cols=81 Identities=14% Similarity=0.062 Sum_probs=67.3
Q ss_pred HHHhcccHHHHHHHHHHHHHHhhhcCCCccHHH-----HHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 048394 399 YYLRSRQLDLALNEMEAALSEAKQFHWRPMQVT-----VDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTY 473 (485)
Q Consensus 399 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 473 (485)
-++..|++++|..-|..++.. .++...- |..-..++.+.+.++.|+.-..+.++++|....+...-+.+|
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~-----cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES-----CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAY 178 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh-----CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHH
Confidence 467899999999999999998 4444333 333345778999999999999999999999999988889999
Q ss_pred HHhCCCcchhc
Q 048394 474 IAAGKLASDMR 484 (485)
Q Consensus 474 ~~~g~~~~A~~ 484 (485)
.+..++++|+.
T Consensus 179 ek~ek~eeale 189 (271)
T KOG4234|consen 179 EKMEKYEEALE 189 (271)
T ss_pred HhhhhHHHHHH
Confidence 99999998873
No 283
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.85 E-value=1.5 Score=34.44 Aligned_cols=112 Identities=13% Similarity=0.098 Sum_probs=56.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHccCC-CCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcc
Q 048394 326 QALAKLNAIDILKQCFEEWESRCSS-YDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSR 404 (485)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 404 (485)
..-...++.+++..++..+.-..+. +...++. ...+...|++.+|..+|+++.+. .|....-..|+..|....
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~~----~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPEFPELDLFD--GWLHIVRGDWDDALRLLRELEER----APGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhcc----CCCChHHHHHHHHHHHHc
Confidence 3334567788888888877665433 1222332 33456778888888888887665 343333344444444333
Q ss_pred cHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHH
Q 048394 405 QLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEE 450 (485)
Q Consensus 405 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 450 (485)
.-..=...-+++...+ +|..+ ..++..+....+...|..
T Consensus 92 ~D~~Wr~~A~evle~~------~d~~a-~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 92 GDPSWRRYADEVLESG------ADPDA-RALVRALLARADLEPAHE 130 (160)
T ss_pred CChHHHHHHHHHHhcC------CChHH-HHHHHHHHHhccccchhh
Confidence 2222222333444443 34443 234444444444444443
No 284
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.83 E-value=1.5 Score=34.40 Aligned_cols=58 Identities=19% Similarity=0.088 Sum_probs=36.8
Q ss_pred HHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCC
Q 048394 260 YVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPT 317 (485)
Q Consensus 260 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 317 (485)
-.+.++.+++..++..+.-..|.....-..-...+...|+|.+|.++|+.+....+..
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~ 77 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF 77 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence 3455677777777777766666555555555556667777777777777765555433
No 285
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.80 E-value=0.091 Score=28.80 Aligned_cols=31 Identities=10% Similarity=-0.034 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHhhcCCC
Q 048394 431 TVDTFFRFFEEEKDVDGAEEFCKVLKSLNCL 461 (485)
Q Consensus 431 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 461 (485)
.|..+...+...|++++|.+.++++++..|.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4555666666777777777777777666664
No 286
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.73 E-value=0.28 Score=43.08 Aligned_cols=93 Identities=17% Similarity=0.155 Sum_probs=48.8
Q ss_pred HHhcCcHHHHHHHHHHHHhcccccCC-chhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhh
Q 048394 363 YLQKDMYEEAALIFNNAKKRANASAR-FFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEE 441 (485)
Q Consensus 363 ~~~~~~~~~A~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 441 (485)
|.++|.+++|+..|...... .| |.+++..-..+|.+...+..|..-...++..+ ..-...|..-..+-..
T Consensus 107 yFKQgKy~EAIDCYs~~ia~----~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-----~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAV----YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-----KLYVKAYSRRMQARES 177 (536)
T ss_pred hhhccchhHHHHHhhhhhcc----CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-----HHHHHHHHHHHHHHHH
Confidence 55666666666666655544 33 55555555556666666666655555555442 1112223333333333
Q ss_pred cCChhhHHHHHHHHhhcCCCCHH
Q 048394 442 EKDVDGAEEFCKVLKSLNCLDFS 464 (485)
Q Consensus 442 ~~~~~~A~~~~~~~~~~~~~~~~ 464 (485)
.|+..+|.+-++.++++.|.+..
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcccHH
Confidence 45566666666666666665433
No 287
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.47 E-value=0.089 Score=28.92 Aligned_cols=31 Identities=13% Similarity=0.000 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHhhcCCC
Q 048394 431 TVDTFFRFFEEEKDVDGAEEFCKVLKSLNCL 461 (485)
Q Consensus 431 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 461 (485)
+|..+..++...|++++|+..|+++++..|.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4555555666666666666666666665553
No 288
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.36 E-value=6.3 Score=39.52 Aligned_cols=180 Identities=12% Similarity=0.079 Sum_probs=113.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhhCCHHHHHHHHHhhcc-cCCCHhHHHHHH
Q 048394 75 RKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSY--TDFAVYLDLTAKTNGIAAAEKYFNGLSE-YAKNRYTYGALL 151 (485)
Q Consensus 75 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li 151 (485)
.+.....-+..+++...++.|+.+-+. .+..++. .......+.+.+.|++++|...|-+... ..|.. +|
T Consensus 333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~-----Vi 404 (933)
T KOG2114|consen 333 IEKDLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSE-----VI 404 (933)
T ss_pred eeccHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHH-----HH
Confidence 455666778888888999999887654 3322222 2233344556678999999988776655 44432 45
Q ss_pred HHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHh
Q 048394 152 NCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDID 231 (485)
Q Consensus 152 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 231 (485)
.-|....++.+-..+++.+.+.|+. +...-..|+.+|.+.++.++..++.+... .|.. ..-....+..+.+.+-.+
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 5667778888888899999999887 66677889999999999888777665544 2321 111234555556666666
Q ss_pred HHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHH
Q 048394 232 GVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKK 275 (485)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 275 (485)
+|..+-..... +...... .+-..+++++|++.+..
T Consensus 481 ~a~~LA~k~~~------he~vl~i---lle~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 481 EAELLATKFKK------HEWVLDI---LLEDLHNYEEALRYISS 515 (933)
T ss_pred HHHHHHHHhcc------CHHHHHH---HHHHhcCHHHHHHHHhc
Confidence 65544333221 2333222 23345666777666554
No 289
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.30 E-value=3.6 Score=36.45 Aligned_cols=150 Identities=7% Similarity=-0.147 Sum_probs=74.3
Q ss_pred cCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHhcCChhh
Q 048394 227 LNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRD----RKAYHFLISLYCNTSNLDA 302 (485)
Q Consensus 227 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~ 302 (485)
.|+..+|-..++++.+ ..|.|...+...-.+|.-.|+.+.....++++...-.++ ........-++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 4555555555555555 455555555555555556666665555555544421112 2222333334445566666
Q ss_pred HHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc---cCCCCHHhHHHHHHHHHhcCcHHHHHHHHHH
Q 048394 303 VNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESR---CSSYDMRLADVIIRAYLQKDMYEEAALIFNN 378 (485)
Q Consensus 303 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 378 (485)
|++.-++..+.++.|..+-.++...+--.|+..++.++..+-... +...-...|-...-.+...+.++.|+.+|++
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 666666655555555555555555555556666665554433221 1101112222233334445566666666654
No 290
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.23 E-value=0.074 Score=29.35 Aligned_cols=31 Identities=32% Similarity=0.533 Sum_probs=18.9
Q ss_pred HHHHhcCCCChHHHHHHHHHHHhcCChhhHH
Q 048394 274 KKLEEMKPRDRKAYHFLISLYCNTSNLDAVN 304 (485)
Q Consensus 274 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 304 (485)
++..+..|.+..+|+.+...|...|++++|+
T Consensus 3 ~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444455666666666666666666666654
No 291
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.10 E-value=3.2 Score=38.57 Aligned_cols=88 Identities=9% Similarity=0.041 Sum_probs=37.9
Q ss_pred HHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHH
Q 048394 293 LYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEA 372 (485)
Q Consensus 293 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 372 (485)
.....|+++.+...+......-.....+...++....+.|+++.|...-..|....+. ++.......-.--..|-++++
T Consensus 332 i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHH
Confidence 3444455555554444443332223344444455555555555555555544444333 222222222222233444555
Q ss_pred HHHHHHHHh
Q 048394 373 ALIFNNAKK 381 (485)
Q Consensus 373 ~~~~~~~~~ 381 (485)
...|++...
T Consensus 411 ~~~wk~~~~ 419 (831)
T PRK15180 411 YHYWKRVLL 419 (831)
T ss_pred HHHHHHHhc
Confidence 555555443
No 292
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.02 E-value=1.9 Score=32.36 Aligned_cols=62 Identities=13% Similarity=0.085 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Q 048394 356 ADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEA 420 (485)
Q Consensus 356 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 420 (485)
....+..+...|+-+.-.+++..+.+.+ .+++.....+..+|.+.|+..++-+++.++.+.|
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~---~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE---EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH--------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc---CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3444555666666666666666665433 4555556666677777777777777777776665
No 293
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.00 E-value=0.71 Score=40.15 Aligned_cols=78 Identities=17% Similarity=0.071 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-----ccCCCCHHhHHHH
Q 048394 285 KAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWES-----RCSSYDMRLADVI 359 (485)
Q Consensus 285 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 359 (485)
.++..+++.+...|+.+.+...++++....|.+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34455555666666666666666666666655666666666666666666666666665543 4666666665544
Q ss_pred HHH
Q 048394 360 IRA 362 (485)
Q Consensus 360 ~~~ 362 (485)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 294
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.99 E-value=3.6 Score=36.64 Aligned_cols=126 Identities=10% Similarity=0.160 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhccCCCCcHHHHHHHHHHHHh--c----ccHHHHHHHHHHHHhcCC----CChHHHHHHHHHHHhcCCh-
Q 048394 232 GVERVFYEMCNECEDKCRWTTYSNLASIYVK--A----ELFEKAELALKKLEEMKP----RDRKAYHFLISLYCNTSNL- 300 (485)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~- 300 (485)
+...+++.+.+ .|+.-+..+|-+....... . ....+|..+++.|++..| ++..++..++.. ..++.
T Consensus 80 ~~~~~y~~L~~-~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 80 EVLDIYEKLKE-AGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHH-hccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 34455555555 4555555444332222221 1 134556667777766222 344445444333 22222
Q ss_pred ---hhHHHHHHHhhhcCCC--ChhhHHHHHHHHHhc-CC--hhHHHHHHHHHHHccCCCCHHhHHHHH
Q 048394 301 ---DAVNRVWGILKSTFPP--TNTSYLVLLQALAKL-NA--IDILKQCFEEWESRCSSYDMRLADVII 360 (485)
Q Consensus 301 ---~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~ 360 (485)
+.+..+|+.+.+.+.. +..-+.+-+-++... .. ...+.++++.+.+.|+++....|..+.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 4455666666665554 332222222222221 11 345667777777777776666665443
No 295
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.72 E-value=0.55 Score=32.89 Aligned_cols=63 Identities=10% Similarity=0.043 Sum_probs=47.4
Q ss_pred cHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHH
Q 048394 405 QLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIK 471 (485)
Q Consensus 405 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 471 (485)
+.-++.+-++.+.... ..|++.+..+.+++|.+.+|+..|.++++-+......+...|..+++
T Consensus 22 D~we~rr~mN~l~~~D----lVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYD----LVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccc----cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 3445566666666665 88999999999999999999999999999888654444455655543
No 296
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.53 E-value=2.5 Score=34.40 Aligned_cols=100 Identities=13% Similarity=0.111 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCC--HHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-cCCchhHHHH
Q 048394 319 TSYLVLLQALAKLNAIDILKQCFEEWESRCSSYD--MRLADVIIRAYLQKDMYEEAALIFNNAKKRANA-SARFFKSRES 395 (485)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~p~~~~~~~ 395 (485)
..+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+++.....+++..+...+.+....-.. ..++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4556677777777777777777777766544433 344555667777777777777776665543110 0111111111
Q ss_pred HHH--HHHhcccHHHHHHHHHHHHH
Q 048394 396 FMI--YYLRSRQLDLALNEMEAALS 418 (485)
Q Consensus 396 l~~--~~~~~g~~~~A~~~~~~~~~ 418 (485)
... .+...+++.+|-+.|-....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 111 12456777777777666543
No 297
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.52 E-value=8.5 Score=38.05 Aligned_cols=187 Identities=10% Similarity=0.016 Sum_probs=108.1
Q ss_pred cccHHHHHHHHHHcCCCccHHHHHHH--HHH-HHhcCCHhHHHHHHHHHHhc---cCCCCcHHHHHHHHHHHHhcc----
Q 048394 195 PEKVRPLVNQMKQRNISLDNLTYIVW--MQS-YSHLNDIDGVERVFYEMCNE---CEDKCRWTTYSNLASIYVKAE---- 264 (485)
Q Consensus 195 ~~~a~~~~~~~~~~~~~p~~~~~~~l--~~~-~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~---- 264 (485)
...+.++++...+.|..-. ...... ..+ +....+.+.|+.+|+.+.+. ....-......-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a-~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~ 306 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEA-QYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEK 306 (552)
T ss_pred hhHHHHHHHHHHhhcchHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcc
Confidence 4567888888777763211 111111 222 44667888899888877551 001112234445777777643
Q ss_pred -cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-cCChhhHHHHHHHhhhcCCCChhhHHHHHHHHH--hcCChhHHHHH
Q 048394 265 -LFEKAELALKKLEEMKPRDRKAYHFLISLYCN-TSNLDAVNRVWGILKSTFPPTNTSYLVLLQALA--KLNAIDILKQC 340 (485)
Q Consensus 265 -~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~ 340 (485)
+.+.|..++........|+.......+..... ..+...|.++|...-..|.....-+..+..... -..+.+.|...
T Consensus 307 ~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~ 386 (552)
T KOG1550|consen 307 IDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAY 386 (552)
T ss_pred ccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHH
Confidence 67778888888877666565554444333333 245678888888887777653333322222221 23467888888
Q ss_pred HHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q 048394 341 FEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRAN 384 (485)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 384 (485)
+.+..+.| .|...--...+..+.. ++++.+.-.+..+.+.+.
T Consensus 387 ~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 387 YKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 88888887 3232222223333444 777777777776666653
No 298
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.40 E-value=7.1 Score=36.84 Aligned_cols=163 Identities=12% Similarity=0.065 Sum_probs=83.0
Q ss_pred ChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHH
Q 048394 178 NTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLA 257 (485)
Q Consensus 178 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 257 (485)
|....-+++..+..+-.+.-+..+..+|...| -+...|..++++|... ..++-..+++++.+ -+-.|+..-..|+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve--~dfnDvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVE--YDFNDVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHH--hcchhHHHHHHHH
Confidence 44455666666666666666666666766654 3556666666666666 45555666666665 2223333333344
Q ss_pred HHHHhcccHHHHHHHHHHHHhc-CC-C----ChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC--ChhhHHHHHHHHH
Q 048394 258 SIYVKAELFEKAELALKKLEEM-KP-R----DRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP--TNTSYLVLLQALA 329 (485)
Q Consensus 258 ~~~~~~~~~~~A~~~~~~~~~~-~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~ 329 (485)
..|-+ ++..++...|.++... .| . -...|..+.... ..+.+....+...+...... -...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 44433 6666666666665541 11 0 112333333211 23444444444444433222 2333334444555
Q ss_pred hcCChhHHHHHHHHHHHcc
Q 048394 330 KLNAIDILKQCFEEWESRC 348 (485)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~ 348 (485)
...++++|++++..+.+..
T Consensus 217 ~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 217 ENENWTEAIRILKHILEHD 235 (711)
T ss_pred cccCHHHHHHHHHHHhhhc
Confidence 5556666666666555554
No 299
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.34 E-value=1.4 Score=35.72 Aligned_cols=60 Identities=15% Similarity=0.083 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCChhhHHHHHHHhh
Q 048394 252 TYSNLASIYVKAELFEKAELALKKLEEMK---PRDRKAYHFLISLYCNTSNLDAVNRVWGILK 311 (485)
Q Consensus 252 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 311 (485)
.+..++..|.+.|+.+.|.+.+.++.+-. ..-...+..+++.....+++..+...+.++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34455555555666666665555555411 1123334455555555555555555554443
No 300
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.21 E-value=10 Score=38.03 Aligned_cols=49 Identities=22% Similarity=0.231 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhh
Q 048394 75 RKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKT 124 (485)
Q Consensus 75 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (485)
+......++--|.|.|++++|.++....... .......+...+..+...
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 5556677788888999999999988554333 234455666667776553
No 301
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.12 E-value=19 Score=40.99 Aligned_cols=150 Identities=11% Similarity=0.073 Sum_probs=96.2
Q ss_pred HHHHHHHhcCcHHHHHHHHHHH----HhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 048394 149 ALLNCYCKELMTERALALFEKM----DELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSY 224 (485)
Q Consensus 149 ~li~~~~~~~~~~~A~~~~~~m----~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 224 (485)
.+..+-.+++.+..|...+++- ++... ...-|-.+...|...+++|.+.-+...-.. .|+ . ..-|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~--~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l-~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKET--EEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--L-YQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHH--HHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--H-HHHHHHH
Confidence 4455666788999999998883 22211 122344455589999999988887764222 122 2 2344456
Q ss_pred HhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHH-HHHHHHhcCChhhH
Q 048394 225 SHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHF-LISLYCNTSNLDAV 303 (485)
Q Consensus 225 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a 303 (485)
...|+++.|...|+.+.+ ..++...+++-++......|.++......+-.....++....++. =..+-.+.++++..
T Consensus 1460 e~~g~~~da~~Cye~~~q--~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQ--KDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhc--CCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhh
Confidence 678999999999999987 555556667767777667788887777666655533433333333 34444677777776
Q ss_pred HHHHH
Q 048394 304 NRVWG 308 (485)
Q Consensus 304 ~~~~~ 308 (485)
...+.
T Consensus 1538 e~~l~ 1542 (2382)
T KOG0890|consen 1538 ESYLS 1542 (2382)
T ss_pred hhhhh
Confidence 66654
No 302
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.11 E-value=19 Score=40.98 Aligned_cols=149 Identities=11% Similarity=-0.007 Sum_probs=94.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHH----HhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHh-hcccCCCHhHHHHHHHHHH
Q 048394 81 YCVRSLRKFGRYRHALEVIEWM----ESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNG-LSEYAKNRYTYGALLNCYC 155 (485)
Q Consensus 81 ~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~li~~~~ 155 (485)
.+..+-.+.+.+..|+-.++.- .+.. .....|-.+...|+.-+++|....+... .. +...+. -|....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~sl~~-qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPSLYQ-QILEHE 1460 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----CccHHH-HHHHHH
Confidence 3444566778888888888873 2221 2233445555588999999988888774 32 222233 333456
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHH-HHHHHhcCCHhHHH
Q 048394 156 KELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVW-MQSYSHLNDIDGVE 234 (485)
Q Consensus 156 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~~~~~~a~ 234 (485)
..|++..|...|+.+.+.+.. ...+++-++......|.++.++-..+-.... ..+....++.+ +.+--+.++++...
T Consensus 1461 ~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 679999999999999887632 3667887777777777777777655555443 23333334333 44556777777766
Q ss_pred HHHH
Q 048394 235 RVFY 238 (485)
Q Consensus 235 ~~~~ 238 (485)
..+.
T Consensus 1539 ~~l~ 1542 (2382)
T KOG0890|consen 1539 SYLS 1542 (2382)
T ss_pred hhhh
Confidence 6655
No 303
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.05 E-value=7.2 Score=35.90 Aligned_cols=65 Identities=12% Similarity=0.002 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 048394 283 DRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP----TNTSYLVLLQALAKLNAIDILKQCFEEWESR 347 (485)
Q Consensus 283 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 347 (485)
...+|..++..+.+.|.++.|...+..+...... .+.....-+..+-..|+..+|...++...+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556777777777777777777777776664422 2334444455556667777777777766653
No 304
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.91 E-value=0.29 Score=27.37 Aligned_cols=25 Identities=20% Similarity=0.212 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHH
Q 048394 393 RESFMIYYLRSRQLDLALNEMEAAL 417 (485)
Q Consensus 393 ~~~l~~~~~~~g~~~~A~~~~~~~~ 417 (485)
|..|...|.+.|++++|+++|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555566666666666666543
No 305
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.84 E-value=4.5 Score=37.69 Aligned_cols=131 Identities=8% Similarity=0.003 Sum_probs=94.4
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Q 048394 218 IVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNT 297 (485)
Q Consensus 218 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 297 (485)
..-|.--...|++-.|.+-+..........|+... .....+...|+++.+...+............+...+++...+.
T Consensus 293 ~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l 370 (831)
T PRK15180 293 TLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGL 370 (831)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhch
Confidence 33444455678877776555544442333344333 2445566789999999999888875555678889999999999
Q ss_pred CChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCC
Q 048394 298 SNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSS 350 (485)
Q Consensus 298 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 350 (485)
|+++.|...-+-|......++.......-.....|-++++.-.|+++.....+
T Consensus 371 ~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 371 ARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred hhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 99999999999998887777776665555566678889999999988765443
No 306
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.70 E-value=0.25 Score=27.65 Aligned_cols=27 Identities=15% Similarity=0.322 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHhh
Q 048394 431 TVDTFFRFFEEEKDVDGAEEFCKVLKS 457 (485)
Q Consensus 431 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 457 (485)
+|..|...|.+.|++++|+.++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467889999999999999999999654
No 307
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.62 E-value=4.8 Score=32.75 Aligned_cols=90 Identities=12% Similarity=0.155 Sum_probs=51.4
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHH-----HHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHH
Q 048394 359 IIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRE-----SFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVD 433 (485)
Q Consensus 359 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 433 (485)
+...+..++++++|..-++..... |....+. .|.......|.+|+|+..++.....+ +. .....
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~-----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~----w~--~~~~e 163 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ-----TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES----WA--AIVAE 163 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc-----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc----HH--HHHHH
Confidence 344566677777777777665542 1112222 23344566777777777776655433 11 12222
Q ss_pred HHHHHHhhcCChhhHHHHHHHHhhcC
Q 048394 434 TFFRFFEEEKDVDGAEEFCKVLKSLN 459 (485)
Q Consensus 434 ~l~~~~~~~~~~~~A~~~~~~~~~~~ 459 (485)
.-...+...|+-++|...|++.++.+
T Consensus 164 lrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 164 LRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 33356667777777777777777765
No 308
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.55 E-value=0.65 Score=32.90 Aligned_cols=60 Identities=10% Similarity=0.061 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHH
Q 048394 408 LALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIK 471 (485)
Q Consensus 408 ~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 471 (485)
+..+-++.+.... ..|++.+..+.+++|.+.+|+..|.++++.+..........|..+++
T Consensus 28 e~rrglN~l~~~D----lVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYD----LVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSS----B---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccc----cCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 4445555555544 88999999999999999999999999999888765544436655554
No 309
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.50 E-value=3.7 Score=39.45 Aligned_cols=131 Identities=15% Similarity=0.099 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhc
Q 048394 78 MLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKE 157 (485)
Q Consensus 78 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~ 157 (485)
.-..+...+.++|..++|+++- +|. ..-.....+.|+++.|.++..+.. +..-|..|..+..+.
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s---------~D~---d~rFelal~lgrl~iA~~la~e~~----s~~Kw~~Lg~~al~~ 679 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS---------TDP---DQRFELALKLGRLDIAFDLAVEAN----SEVKWRQLGDAALSA 679 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC---------CCh---hhhhhhhhhcCcHHHHHHHHHhhc----chHHHHHHHHHHhhc
Confidence 3344455555555555555442 121 112233345666666666655543 455666666666666
Q ss_pred CcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHH
Q 048394 158 LMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVF 237 (485)
Q Consensus 158 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 237 (485)
+++..|.+.|.+... |..|+-.+...|+-+....+-....+.|. .|....+|...|+++++.+++
T Consensus 680 ~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 680 GELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELL 744 (794)
T ss_pred ccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHH
Confidence 777766666655443 44455555666665555555555555442 122333455566666666655
Q ss_pred HH
Q 048394 238 YE 239 (485)
Q Consensus 238 ~~ 239 (485)
..
T Consensus 745 i~ 746 (794)
T KOG0276|consen 745 IS 746 (794)
T ss_pred Hh
Confidence 44
No 310
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.44 E-value=4.6 Score=32.19 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=12.3
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhCCC
Q 048394 168 EKMDELKFLGNTVAFNNLSTMYLRLGQ 194 (485)
Q Consensus 168 ~~m~~~~~~p~~~~~~~l~~~~~~~g~ 194 (485)
+.+.+.++.|+...+..++..+.+.|+
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 333344444444444444444444444
No 311
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.14 E-value=0.34 Score=26.43 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=17.0
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHhhcCC
Q 048394 431 TVDTFFRFFEEEKDVDGAEEFCKVLKSLNC 460 (485)
Q Consensus 431 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 460 (485)
+|..+...+...|++++|.+.|++..+..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344455555556666666666666655544
No 312
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.03 E-value=1.1 Score=31.41 Aligned_cols=46 Identities=11% Similarity=0.140 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 048394 197 KVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCN 242 (485)
Q Consensus 197 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (485)
++.+-++.+....+.|++.+..+.+++|.+.+++..|.++|+.+..
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4455555666666777777777777777777777777777776664
No 313
>PRK11619 lytic murein transglycosylase; Provisional
Probab=92.03 E-value=15 Score=37.04 Aligned_cols=117 Identities=9% Similarity=-0.070 Sum_probs=69.0
Q ss_pred hcCChhhHHHHHHHhhhcCCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHH
Q 048394 296 NTSNLDAVNRVWGILKSTFPP----TNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEE 371 (485)
Q Consensus 296 ~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 371 (485)
...+.+.|...+........- .......+.......+..+++...+........ +......-+..-...++++.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~--~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ--STSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC--CcHHHHHHHHHHHHccCHHH
Confidence 345668888888876444332 222333444333343325566666665443322 44444555555568889988
Q ss_pred HHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHH
Q 048394 372 AALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAAL 417 (485)
Q Consensus 372 A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 417 (485)
+...+..|.... .-...-.--+..++...|+.++|...|+.+.
T Consensus 331 ~~~~i~~L~~~~---~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEA---KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhh---ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 888888875532 2122223356677777899999999988873
No 314
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.80 E-value=16 Score=36.86 Aligned_cols=323 Identities=11% Similarity=0.019 Sum_probs=151.3
Q ss_pred hhhHHHHHHHHHhhCCHHHHHHHHHhhcccCC-CHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhh-HHHHHHH
Q 048394 111 YTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAK-NRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVA-FNNLSTM 188 (485)
Q Consensus 111 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~ 188 (485)
...|.....+ .+.|++..+.++...+...+. .-..|..|.... ....+++...++++-... |-... -...+..
T Consensus 34 r~~f~~A~~a-~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~~~---P~~~~Lr~~~l~~ 108 (644)
T PRK11619 34 RQRYQQIKQA-WDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDL-MNQPAVQVTNFIRANPTL---PPARSLQSRFVNE 108 (644)
T ss_pred HHHHHHHHHH-HHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhcc-ccCCHHHHHHHHHHCCCC---chHHHHHHHHHHH
Confidence 3344444444 356788888888777764211 122333332221 122455544444432221 21111 2233334
Q ss_pred HHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHH
Q 048394 189 YLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEK 268 (485)
Q Consensus 189 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 268 (485)
+.+.+++....+++. . .+.+...-.....+....|+.++|......+=. .....+...+.+...+.+.|....
T Consensus 109 La~~~~w~~~~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~--~g~~~p~~cd~l~~~~~~~g~lt~ 181 (644)
T PRK11619 109 LARREDWRGLLAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWL--TGKSLPNACDKLFSVWQQSGKQDP 181 (644)
T ss_pred HHHccCHHHHHHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCCCCChHHHHHHHHHHHcCCCCH
Confidence 455666665555221 1 123444445566677778887777666665533 122234455567777776665443
Q ss_pred HHHHHHHHHh-cCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhh----------cCCCChhhHHHHHHHH--HhcCChh
Q 048394 269 AELALKKLEE-MKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKS----------TFPPTNTSYLVLLQAL--AKLNAID 335 (485)
Q Consensus 269 A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~~~~~~~~~~~l~~~~--~~~~~~~ 335 (485)
.. +..++.. ....+...-..+...+. .+.....+.+..+.. ..+++...-..++.++ ....+.+
T Consensus 182 ~d-~w~R~~~al~~~~~~lA~~l~~~l~--~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~ 258 (644)
T PRK11619 182 LA-YLERIRLAMKAGNTGLVTYLAKQLP--ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAE 258 (644)
T ss_pred HH-HHHHHHHHHHCCCHHHHHHHHHhcC--hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHH
Confidence 32 3333333 22223333333333221 111111111111111 0111111111111122 2345567
Q ss_pred HHHHHHHHHHHcc-CCCC--HHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHH
Q 048394 336 ILKQCFEEWESRC-SSYD--MRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNE 412 (485)
Q Consensus 336 ~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 412 (485)
.|...+....... ..+. ..++..+.......+..++|...++..... ..+......-+..-...++++.+...
T Consensus 259 ~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~----~~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 259 NARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR----SQSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc----cCCcHHHHHHHHHHHHccCHHHHHHH
Confidence 7777777764433 2211 223333433333332245566666554433 22334444445555678888888888
Q ss_pred HHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 048394 413 MEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKS 457 (485)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 457 (485)
+..|.... .-...-.-=+.+++...|+.++|..+|+.+..
T Consensus 335 i~~L~~~~-----~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 335 LARLPMEA-----KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHhcCHhh-----ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88875542 22223333344666678888999888888744
No 315
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.50 E-value=0.0054 Score=48.11 Aligned_cols=53 Identities=9% Similarity=0.149 Sum_probs=23.2
Q ss_pred HHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHH
Q 048394 186 STMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFY 238 (485)
Q Consensus 186 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 238 (485)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33444444444444444444443333334444445555555444444444443
No 316
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.42 E-value=0.27 Score=43.14 Aligned_cols=81 Identities=19% Similarity=0.149 Sum_probs=65.0
Q ss_pred HHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhC
Q 048394 398 IYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAG 477 (485)
Q Consensus 398 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 477 (485)
+-|++.|++++|+++|...+... +-++.++..-..+|.+.+.+..|+.-...++.++..-..+|..-+.+-...|
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-----P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-----PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-----CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 35789999999999999998863 3388888888889999999999999888888877666667777666666666
Q ss_pred CCcchh
Q 048394 478 KLASDM 483 (485)
Q Consensus 478 ~~~~A~ 483 (485)
+..+|-
T Consensus 180 ~~~EAK 185 (536)
T KOG4648|consen 180 NNMEAK 185 (536)
T ss_pred hHHHHH
Confidence 666653
No 317
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.34 E-value=11 Score=34.22 Aligned_cols=119 Identities=10% Similarity=0.006 Sum_probs=73.1
Q ss_pred hhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHh---cCcHHHHHHHHH
Q 048394 301 DAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQ---KDMYEEAALIFN 377 (485)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~ 377 (485)
+.-+.+++++.+.++.+......++..+.+..+.+...+.++.+....+. +...|...+..... .-.+++...+|.
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 44556777777776667777777777777777777777777777776444 66677666665443 234555665555
Q ss_pred HHHhc------cc-cc-CCchhH-------HHHHHHHHHhcccHHHHHHHHHHHHHHh
Q 048394 378 NAKKR------AN-AS-ARFFKS-------RESFMIYYLRSRQLDLALNEMEAALSEA 420 (485)
Q Consensus 378 ~~~~~------~~-~~-~p~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 420 (485)
+.... +. .. .+...+ +..+...+.++|..+.|+.+++.+++.+
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 54331 00 00 011111 2222233457999999999999999876
No 318
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.24 E-value=0.82 Score=24.79 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCC
Q 048394 253 YSNLASIYVKAELFEKAELALKKLEEMKP 281 (485)
Q Consensus 253 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 281 (485)
+..+..++...|++++|.+.|++..+..|
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 33455555555555555555555554333
No 319
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.20 E-value=0.58 Score=25.52 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC
Q 048394 252 TYSNLASIYVKAELFEKAELALKKLEEMK 280 (485)
Q Consensus 252 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 280 (485)
+|..++.+|...|++++|+..|++..+..
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 34445555555555555555555554433
No 320
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.19 E-value=5.8 Score=30.72 Aligned_cols=55 Identities=20% Similarity=0.137 Sum_probs=35.7
Q ss_pred hcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC
Q 048394 262 KAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP 316 (485)
Q Consensus 262 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 316 (485)
..++.+++..+++.+.-..|.....-..-...+...|+|++|.++|+.+.+..+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence 3667777777777776666655544444555566777777777777777665543
No 321
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.16 E-value=1 Score=32.01 Aligned_cols=46 Identities=11% Similarity=0.130 Sum_probs=27.8
Q ss_pred cHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 048394 197 KVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCN 242 (485)
Q Consensus 197 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (485)
+..+-++.+-...+.|++.+..+.+++|.+.+++..|.++|+.+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444455555556677777777777777777777777777777666
No 322
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.12 E-value=14 Score=35.02 Aligned_cols=181 Identities=11% Similarity=0.023 Sum_probs=133.3
Q ss_pred cCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHH
Q 048394 140 YAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIV 219 (485)
Q Consensus 140 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 219 (485)
...|....-+++..+..+-++.-...+-.+|..-| -+...|..++.+|..+ ..+.-..+++++.+..+ .|.+.-..
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHH
Confidence 44567778889999999999999999999999876 4677899999999988 56888999999988754 23333344
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhccCCCC------cHHHHHHHHHHHHhcccHHHHHHHHHHHHh--cCCCChHHHHHHH
Q 048394 220 WMQSYSHLNDIDGVERVFYEMCNECEDKC------RWTTYSNLASIYVKAELFEKAELALKKLEE--MKPRDRKAYHFLI 291 (485)
Q Consensus 220 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~ 291 (485)
|...| ..++...+..+|..+.. ...| -..+|..+...- ..+.+....+...+.. +...-...+..+-
T Consensus 138 La~~y-Ekik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~ 212 (711)
T COG1747 138 LADKY-EKIKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVY 212 (711)
T ss_pred HHHHH-HHhchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 45444 44889999999998877 3333 223444444422 4567777777777776 3334456666777
Q ss_pred HHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 048394 292 SLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALA 329 (485)
Q Consensus 292 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 329 (485)
.-|....++++|++++..+.+....+..+-..++.-+.
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 88888999999999999999888887777777766553
No 323
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.07 E-value=8.4 Score=32.38 Aligned_cols=87 Identities=8% Similarity=-0.055 Sum_probs=43.8
Q ss_pred CChhHHHHHHHHHHHc--cCCCCHH---hHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHH----HHHHHH-
Q 048394 332 NAIDILKQCFEEWESR--CSSYDMR---LADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRES----FMIYYL- 401 (485)
Q Consensus 332 ~~~~~a~~~~~~~~~~--~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~----l~~~~~- 401 (485)
.+++.|+..|+..-+. |-..+.. .+-.+...-...+++.+|..+|++...... ..+..-|.. +-.+++
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~--~n~LLKys~KdyflkAgLCh 205 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL--DNNLLKYSAKDYFLKAGLCH 205 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cchHHHhHHHHHHHHHHHHh
Confidence 5566666666655432 1111111 222223333456788888888888776644 333333321 111122
Q ss_pred -hcccHHHHHHHHHHHHHHh
Q 048394 402 -RSRQLDLALNEMEAALSEA 420 (485)
Q Consensus 402 -~~g~~~~A~~~~~~~~~~~ 420 (485)
-..+.-.+...+++..+..
T Consensus 206 l~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 206 LCKADEVNAQRALEKYQELD 225 (288)
T ss_pred HhcccHHHHHHHHHHHHhcC
Confidence 2255666667777776654
No 324
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.05 E-value=0.47 Score=25.54 Aligned_cols=25 Identities=24% Similarity=0.151 Sum_probs=12.4
Q ss_pred HHHHhhcCChhhHHHHHHHHhhcCC
Q 048394 436 FRFFEEEKDVDGAEEFCKVLKSLNC 460 (485)
Q Consensus 436 ~~~~~~~~~~~~A~~~~~~~~~~~~ 460 (485)
..++.+.|++++|.+.|+++++..|
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3444445555555555555555444
No 325
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.95 E-value=6.2 Score=34.69 Aligned_cols=99 Identities=11% Similarity=0.048 Sum_probs=48.8
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHH
Q 048394 283 DRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP---TNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVI 359 (485)
Q Consensus 283 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 359 (485)
...+...++..-....+++.+...+-+++..... ...+....+..+ -.-+.++++.++..=.+.|+-||.++++.+
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c~l 141 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFCLL 141 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchhhHHHH
Confidence 3334444444444445555555555554432211 111111222222 223444555555555566666666666666
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhc
Q 048394 360 IRAYLQKDMYEEAALIFNNAKKR 382 (485)
Q Consensus 360 ~~~~~~~~~~~~A~~~~~~~~~~ 382 (485)
++.+.+.+++.+|.++.-.|...
T Consensus 142 ~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 142 MDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHhcccHHHHHHHHHHHHHH
Confidence 66666666666666665555443
No 326
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.74 E-value=15 Score=34.64 Aligned_cols=108 Identities=9% Similarity=-0.050 Sum_probs=69.9
Q ss_pred HHHhcCChhHHHHHHHHHH---HccCCCC-----HHhHHHHHHHHHhcCcHHHHHHHHHHHHh-------cccccCCch-
Q 048394 327 ALAKLNAIDILKQCFEEWE---SRCSSYD-----MRLADVIIRAYLQKDMYEEAALIFNNAKK-------RANASARFF- 390 (485)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~---~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~p~~- 390 (485)
.+.-.|++..|.+++...- ..|...+ -..||.|...+.+.|.+..+..+|.+..+ .|. .|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~--~~~~~ 326 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGL--KPAKT 326 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccC--CCCcc
Confidence 3445788888888776542 1221111 22346666666677777777777776653 343 3321
Q ss_pred ----------hHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhc
Q 048394 391 ----------KSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEE 442 (485)
Q Consensus 391 ----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 442 (485)
.+||. .-.|...|++-.|.++|.+.... +..++..|..+..+|...
T Consensus 327 ~tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-----fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-----FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred eehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-----HhcCcHHHHHHHHHHHHH
Confidence 22332 23467889999999999999888 788889999998888643
No 327
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.50 E-value=11 Score=32.83 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 048394 285 KAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWE 345 (485)
Q Consensus 285 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 345 (485)
.+++.....|...|.+.+|.++.++...-.+-+...+-.++..+...||--.+.+.++.+.
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 4455666777788888888888888777777777777788888888888777777666654
No 328
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.91 E-value=7.7 Score=30.07 Aligned_cols=18 Identities=6% Similarity=-0.025 Sum_probs=8.6
Q ss_pred hcCcHHHHHHHHHHHHhC
Q 048394 156 KELMTERALALFEKMDEL 173 (485)
Q Consensus 156 ~~~~~~~A~~~~~~m~~~ 173 (485)
..|++.+|..+|++..+.
T Consensus 56 ~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 56 ARGNYDEAARILRELLSS 73 (153)
T ss_pred HcCCHHHHHHHHHhhhcc
Confidence 444555555555444443
No 329
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.89 E-value=5.6 Score=34.97 Aligned_cols=99 Identities=12% Similarity=0.014 Sum_probs=66.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcc---CCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHH
Q 048394 317 TNTSYLVLLQALAKLNAIDILKQCFEEWESRC---SSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSR 393 (485)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~ 393 (485)
...+...++..-....+++.+...+-++.... ..|+...+. .++.+. .-+.++++.++..=+..|+ -||..++
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~-~irlll-ky~pq~~i~~l~npIqYGi--F~dqf~~ 138 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHT-WIRLLL-KYDPQKAIYTLVNPIQYGI--FPDQFTF 138 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHH-HHHHHH-ccChHHHHHHHhCcchhcc--ccchhhH
Confidence 44555555555555677788877776665431 122222222 333333 3467788888888788888 8888898
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Q 048394 394 ESFMIYYLRSRQLDLALNEMEAALSE 419 (485)
Q Consensus 394 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 419 (485)
+.+|+.+.+.+++.+|..+...|+..
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 88999999999888888888887776
No 330
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.69 E-value=23 Score=35.14 Aligned_cols=180 Identities=16% Similarity=0.009 Sum_probs=108.7
Q ss_pred HHHHHHHHHhhcccCCCHhHHHHHH----HH-HHhcCcHHHHHHHHHHHHh-------CCCCCChhhHHHHHHHHHhCC-
Q 048394 127 IAAAEKYFNGLSEYAKNRYTYGALL----NC-YCKELMTERALALFEKMDE-------LKFLGNTVAFNNLSTMYLRLG- 193 (485)
Q Consensus 127 ~~~a~~~~~~~~~~~~~~~~~~~li----~~-~~~~~~~~~A~~~~~~m~~-------~~~~p~~~~~~~l~~~~~~~g- 193 (485)
...|..+++...+. -+...-..+. .+ +....+.+.|+..|+.+.. .| +.....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~-g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL-GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhh-cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 45677777777661 1222222222 22 4456789999999998876 55 3446677777777754
Q ss_pred ----CcccHHHHHHHHHHcCCCccHHHHHHHHHHHHh-cCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHH----hcc
Q 048394 194 ----QPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSH-LNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYV----KAE 264 (485)
Q Consensus 194 ----~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~ 264 (485)
+.+.|..++...-+.|. |+.......+..... ..+...|.++|....+ .|..+. ..+ +..+|. ...
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~-~G~~~A-~~~--la~~y~~G~gv~r 378 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAK-AGHILA-IYR--LALCYELGLGVER 378 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHH-cCChHH-HHH--HHHHHHhCCCcCC
Confidence 45568888888888774 555544333333222 2467789999988887 444322 222 333332 234
Q ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC
Q 048394 265 LFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP 316 (485)
Q Consensus 265 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 316 (485)
+...|..++++..+...+....-...+..+.. +.++.+.-.+..+...+..
T Consensus 379 ~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred CHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 78888888888877554333333334444444 7777777777777666655
No 331
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.49 E-value=6 Score=31.79 Aligned_cols=41 Identities=12% Similarity=-0.027 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 048394 369 YEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSE 419 (485)
Q Consensus 369 ~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 419 (485)
+++|...|++.... .|+..+|+.-+... ++|-++..++.+.
T Consensus 96 F~kA~~~FqkAv~~----~P~ne~Y~ksLe~~------~kap~lh~e~~~~ 136 (186)
T PF06552_consen 96 FEKATEYFQKAVDE----DPNNELYRKSLEMA------AKAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHHHH-----TT-HHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhc----CCCcHHHHHHHHHH------HhhHHHHHHHHHH
Confidence 45555556555555 67777776665544 2344555555444
No 332
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.33 E-value=28 Score=35.63 Aligned_cols=228 Identities=11% Similarity=0.024 Sum_probs=122.7
Q ss_pred HHhcCCHhHHHHHHHHHHhccCC---CCcHH---HHHHHH-HHHHhcccHHHHHHHHHHHHhcCC-----CChHHHHHHH
Q 048394 224 YSHLNDIDGVERVFYEMCNECED---KCRWT---TYSNLA-SIYVKAELFEKAELALKKLEEMKP-----RDRKAYHFLI 291 (485)
Q Consensus 224 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~---~~~~l~-~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~ 291 (485)
.....++++|..++.++...-+. .+... .++.+- ......|++++|.++.+......| .....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567888888888887661111 11111 122221 222346888999998888877333 3455667777
Q ss_pred HHHHhcCChhhHHHHHHHhhhcCCC-Ch---hhHHHH--HHHHHhcCC--hhHHHHHHHHHHHcc--CC----CCHHhHH
Q 048394 292 SLYCNTSNLDAVNRVWGILKSTFPP-TN---TSYLVL--LQALAKLNA--IDILKQCFEEWESRC--SS----YDMRLAD 357 (485)
Q Consensus 292 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~---~~~~~l--~~~~~~~~~--~~~a~~~~~~~~~~~--~~----~~~~~~~ 357 (485)
.+..-.|+++.|..+..+..+.... +. ..+..+ ...+...|+ .++.+..|....... -+ +-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 8888889999998887766554222 22 222222 233445663 233333444333221 11 1223444
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcccccCCch--hHH--HHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHH
Q 048394 358 VIIRAYLQKDMYEEAALIFNNAKKRANASARFF--KSR--ESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVD 433 (485)
Q Consensus 358 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~--~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 433 (485)
.+..++.+ .+.+..-...-.+.|....|.. ..+ ..|+......|+.++|...+.++......++..++...-.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 45555544 3333332222222211112222 222 2567777889999999999999998874443333433333
Q ss_pred HHHH--HHhhcCChhhHHHHHHH
Q 048394 434 TFFR--FFEEEKDVDGAEEFCKV 454 (485)
Q Consensus 434 ~l~~--~~~~~~~~~~A~~~~~~ 454 (485)
..+. .....||.+.+.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 3333 23457888877776655
No 333
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=89.29 E-value=17 Score=33.06 Aligned_cols=119 Identities=10% Similarity=0.029 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHh---cCChhHHHHHHH
Q 048394 266 FEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAK---LNAIDILKQCFE 342 (485)
Q Consensus 266 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~ 342 (485)
.+.-+.+++++.+..|.+...+..++..+.+..+.+...+.|+++....+.+...|...+..... .-.++....+|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 34455666666666666677777777777777777777777777777766666666666655543 223455555555
Q ss_pred HHHHc------cC----CCC-------HHhHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q 048394 343 EWESR------CS----SYD-------MRLADVIIRAYLQKDMYEEAALIFNNAKKRAN 384 (485)
Q Consensus 343 ~~~~~------~~----~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 384 (485)
+..+. +. .+. ..++..+...+.++|-.+.|..+++-+.+.++
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 43321 11 001 12233344445678999999999999988764
No 334
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.05 E-value=31 Score=35.79 Aligned_cols=113 Identities=17% Similarity=0.157 Sum_probs=60.1
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC----CCChHHHHHHHHHHHhcCCh--hhHHHHHHHhhhcCCC-ChhhHH---
Q 048394 253 YSNLASIYVKAELFEKAELALKKLEEMK----PRDRKAYHFLISLYCNTSNL--DAVNRVWGILKSTFPP-TNTSYL--- 322 (485)
Q Consensus 253 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~-~~~~~~--- 322 (485)
|..|+..|...|+.++|++++..+.+.. +.-...+-.+++.+.+.+.. +-+++.-.-.....+. ....+.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 5667777777888888888877776622 11122233344444444443 3344333333333222 111111
Q ss_pred ---------HHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHh
Q 048394 323 ---------VLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQ 365 (485)
Q Consensus 323 ---------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 365 (485)
..+-.|......+.+..+++.+....-.++....+.++..|..
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1233345556666777777777665555566666767666654
No 335
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.90 E-value=13 Score=31.32 Aligned_cols=15 Identities=13% Similarity=0.268 Sum_probs=8.7
Q ss_pred hCCHHHHHHHHHhhc
Q 048394 124 TNGIAAAEKYFNGLS 138 (485)
Q Consensus 124 ~g~~~~a~~~~~~~~ 138 (485)
.+++++|-++|.+..
T Consensus 27 ~~k~eeAadl~~~Aa 41 (288)
T KOG1586|consen 27 SNKYEEAAELYERAA 41 (288)
T ss_pred CcchHHHHHHHHHHH
Confidence 345666666666554
No 336
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.90 E-value=11 Score=30.67 Aligned_cols=115 Identities=16% Similarity=-0.010 Sum_probs=71.2
Q ss_pred hHHHHHHHhhhcCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCC--HHhHHHHHHHHHhcCcHHHHHHHH
Q 048394 302 AVNRVWGILKSTFPPTN---TSYLVLLQALAKLNAIDILKQCFEEWESRCSSYD--MRLADVIIRAYLQKDMYEEAALIF 376 (485)
Q Consensus 302 ~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~ 376 (485)
+.....+.+...++.+. .+-..+...+...++++.|...++........-+ ..+--.|.+.....|.+++|+.++
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 33344445544443321 2223455667778888888888887664321111 222234666778888999999988
Q ss_pred HHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Q 048394 377 NNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEA 420 (485)
Q Consensus 377 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 420 (485)
+...+.+. .......-.+.+...|+-++|..-|++.+..+
T Consensus 150 ~t~~~~~w----~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 150 DTIKEESW----AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hccccccH----HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 87766543 11223344567788899999999998888774
No 337
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=88.87 E-value=2.4 Score=40.41 Aligned_cols=104 Identities=13% Similarity=-0.112 Sum_probs=80.0
Q ss_pred hcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCC
Q 048394 365 QKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKD 444 (485)
Q Consensus 365 ~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 444 (485)
-.|+...|...+........ ....+....|.+...+.|....|-.++.+.+.. ....+-++..+.+++.-..+
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p--~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~-----~~sepl~~~~~g~~~l~l~~ 691 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAP--LQQDVPLVNLANLLIHYGLHLDATKLLLQALAI-----NSSEPLTFLSLGNAYLALKN 691 (886)
T ss_pred ecCCcHHHHHHHHHHhccCh--hhhcccHHHHHHHHHHhhhhccHHHHHHHHHhh-----cccCchHHHhcchhHHHHhh
Confidence 45788888888877665422 222234455667777888888999999988887 34556677888899999999
Q ss_pred hhhHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 048394 445 VDGAEEFCKVLKSLNCLDFSAYSLLIKTYIA 475 (485)
Q Consensus 445 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 475 (485)
++.|.+.|+.+.+..|.++..-+.|...-|.
T Consensus 692 i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c~ 722 (886)
T KOG4507|consen 692 ISGALEAFRQALKLTTKCPECENSLKLIRCM 722 (886)
T ss_pred hHHHHHHHHHHHhcCCCChhhHHHHHHHHHh
Confidence 9999999999999999999988888776653
No 338
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.85 E-value=5.1 Score=32.86 Aligned_cols=73 Identities=15% Similarity=0.057 Sum_probs=34.1
Q ss_pred ccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhcccHHHH
Q 048394 196 EKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNE--CEDKCRWTTYSNLASIYVKAELFEKA 269 (485)
Q Consensus 196 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A 269 (485)
+.|.+.|-.+...+.--++.....|... ....+.+++..++....+. .+..+|+..+.+|++.|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAty-Y~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATY-YTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHH-HHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4555555555554433333333333322 2344555555555544431 12244555555555555555555554
No 339
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.56 E-value=11 Score=30.09 Aligned_cols=131 Identities=9% Similarity=0.060 Sum_probs=59.3
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCC
Q 048394 63 ALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAK 142 (485)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 142 (485)
.+..+.+.+++|+...+..++..+.+.|++..-. ++.+.++-+|.......+-.+. +....+.++=-.|..
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLk--- 86 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLK--- 86 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHH---
Confidence 3444445566666666677777777666654433 3334444444443333332221 122222222222221
Q ss_pred CH-hHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHH
Q 048394 143 NR-YTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMK 206 (485)
Q Consensus 143 ~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 206 (485)
-. ..+..++..+...|++-+|.++.++.... +...-..++.+..+.+|...-..+|+-..
T Consensus 87 RL~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 87 RLGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred HhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11 13445555566666666666666553221 11222344445445554444444443333
No 340
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.29 E-value=13 Score=36.08 Aligned_cols=26 Identities=8% Similarity=-0.015 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHH
Q 048394 284 RKAYHFLISLYCNTSNLDAVNRVWGI 309 (485)
Q Consensus 284 ~~~~~~l~~~~~~~~~~~~a~~~~~~ 309 (485)
..-|..|.++....+++..|.+.|.+
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHh
Confidence 34455555555555555555554444
No 341
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.15 E-value=31 Score=34.71 Aligned_cols=87 Identities=14% Similarity=0.034 Sum_probs=33.0
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC--ChhhHHHHHHHHHh---
Q 048394 256 LASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP--TNTSYLVLLQALAK--- 330 (485)
Q Consensus 256 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~--- 330 (485)
....+.-.|+++.|.+.+-.. +..+.+...+.. ++...|-+......-..+....+. ...-+..||..|.+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~~-~~~~~dAVH~AI---aL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYRN-EFNRVDAVHFAI---ALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT---T-HHHHHHHHH---HHHHTT------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhh-ccCcccHHHHHH---HHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 344555678888888877661 111112222222 222233222222211222222222 12445667777765
Q ss_pred cCChhHHHHHHHHHHH
Q 048394 331 LNAIDILKQCFEEWES 346 (485)
Q Consensus 331 ~~~~~~a~~~~~~~~~ 346 (485)
..+...|.+.+--+..
T Consensus 340 ~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 340 ITDPREALQYLYLICL 355 (613)
T ss_dssp TT-HHHHHHHHHGGGG
T ss_pred ccCHHHHHHHHHHHHH
Confidence 3556666666665543
No 342
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.76 E-value=16 Score=30.95 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=16.7
Q ss_pred HhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHH
Q 048394 401 LRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFR 437 (485)
Q Consensus 401 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 437 (485)
.....+++|+..+.+..+.+....+++-..+...|..
T Consensus 89 l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ 125 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRD 125 (284)
T ss_pred HhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHH
Confidence 3444455555555555444443334444444444433
No 343
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.69 E-value=7.7 Score=31.88 Aligned_cols=73 Identities=22% Similarity=0.178 Sum_probs=47.5
Q ss_pred CHHHHHHHHHhhcc--cCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhC---CCCCChhhHHHHHHHHHhCCCcccHH
Q 048394 126 GIAAAEKYFNGLSE--YAKNRYTYGALLNCYCKELMTERALALFEKMDEL---KFLGNTVAFNNLSTMYLRLGQPEKVR 199 (485)
Q Consensus 126 ~~~~a~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~ 199 (485)
.-+.|++.|-.+.. .--++.....|...|. ..+.++++.++-+..+. +-.+|+..+.+|++.+.+.|+++.|.
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34556666665554 2234555555555554 67788888888777653 23567778888888888888887764
No 344
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.59 E-value=0.13 Score=40.15 Aligned_cols=82 Identities=12% Similarity=0.134 Sum_probs=39.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcc
Q 048394 325 LQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSR 404 (485)
Q Consensus 325 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 404 (485)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.++...+++.. +..-...++..|.+.|
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~---------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS---------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS---------SSS-CTHHHHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc---------cccCHHHHHHHHHhcc
Confidence 3444445555555555555555444444555566666666655545555554411 0012223444455555
Q ss_pred cHHHHHHHHHH
Q 048394 405 QLDLALNEMEA 415 (485)
Q Consensus 405 ~~~~A~~~~~~ 415 (485)
.+++|.-++.+
T Consensus 85 l~~~a~~Ly~~ 95 (143)
T PF00637_consen 85 LYEEAVYLYSK 95 (143)
T ss_dssp SHHHHHHHHHC
T ss_pred hHHHHHHHHHH
Confidence 55555555544
No 345
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.51 E-value=1.7 Score=24.89 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=12.5
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHH
Q 048394 355 LADVIIRAYLQKDMYEEAALIFNNAK 380 (485)
Q Consensus 355 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 380 (485)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 34445555555555555555555443
No 346
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=87.32 E-value=4.3 Score=38.88 Aligned_cols=117 Identities=10% Similarity=0.014 Sum_probs=75.5
Q ss_pred CCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHH
Q 048394 245 EDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKP-RDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLV 323 (485)
Q Consensus 245 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 323 (485)
.+.|-+...|...-...-.|+...|...+..+....| ........|.+...+.|....|..++.+........+.++..
T Consensus 602 ~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~ 681 (886)
T KOG4507|consen 602 PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLS 681 (886)
T ss_pred CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHh
Confidence 4445555444333333345777777777776665333 334455667777777777777888777776666546677777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHH
Q 048394 324 LLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRA 362 (485)
Q Consensus 324 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 362 (485)
+.+++....+++.|++.|++..+...+ +...-+.|...
T Consensus 682 ~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i 719 (886)
T KOG4507|consen 682 LGNAYLALKNISGALEAFRQALKLTTK-CPECENSLKLI 719 (886)
T ss_pred cchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHH
Confidence 788888888888888888887776544 45555554443
No 347
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.11 E-value=1.6 Score=23.69 Aligned_cols=27 Identities=33% Similarity=0.381 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHh
Q 048394 252 TYSNLASIYVKAELFEKAELALKKLEE 278 (485)
Q Consensus 252 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 278 (485)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555555666666665555554
No 348
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.90 E-value=5.5 Score=33.05 Aligned_cols=78 Identities=12% Similarity=0.016 Sum_probs=52.6
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhH-HHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHH
Q 048394 355 LADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKS-RESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVD 433 (485)
Q Consensus 355 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 433 (485)
|.+.-+..+.+.+...+|+...+.-++. +|.... -..+++.++-.|++++|..-++-.-... +...+....|.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka----kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~--p~~t~~a~lyr 76 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA----KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLS--PQDTVGASLYR 76 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc----CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcC--cccchHHHHHH
Confidence 3455667788888888888888777665 776554 4556777888888888887776665542 22445556666
Q ss_pred HHHHH
Q 048394 434 TFFRF 438 (485)
Q Consensus 434 ~l~~~ 438 (485)
.++.+
T Consensus 77 ~lir~ 81 (273)
T COG4455 77 HLIRC 81 (273)
T ss_pred HHHHH
Confidence 66653
No 349
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.88 E-value=1.8 Score=24.73 Aligned_cols=27 Identities=30% Similarity=0.265 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 048394 145 YTYGALLNCYCKELMTERALALFEKMD 171 (485)
Q Consensus 145 ~~~~~li~~~~~~~~~~~A~~~~~~m~ 171 (485)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345566666666666666666666554
No 350
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.67 E-value=1.7 Score=23.26 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=9.1
Q ss_pred HHHhcccHHHHHHHHHHHHHH
Q 048394 399 YYLRSRQLDLALNEMEAALSE 419 (485)
Q Consensus 399 ~~~~~g~~~~A~~~~~~~~~~ 419 (485)
++.+.|++++|.+.|+++++.
T Consensus 9 ~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 351
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.17 E-value=23 Score=31.07 Aligned_cols=42 Identities=10% Similarity=-0.067 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHH
Q 048394 231 DGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKK 275 (485)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 275 (485)
.+|.++|.-+....|-+.+... ++..+....+..+|...+..
T Consensus 150 ~KA~ELFayLv~hkgk~v~~~~---~ie~lwpe~D~kka~s~lhT 191 (361)
T COG3947 150 RKALELFAYLVEHKGKEVTSWE---AIEALWPEKDEKKASSLLHT 191 (361)
T ss_pred hHHHHHHHHHHHhcCCcccHhH---HHHHHccccchhhHHHHHHH
Confidence 5677888777774455555444 66777777777776666544
No 352
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=86.13 E-value=17 Score=30.82 Aligned_cols=86 Identities=16% Similarity=0.075 Sum_probs=60.8
Q ss_pred HHHhcCCHhHHHHHHHHHHhccCCCCcH-HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChh
Q 048394 223 SYSHLNDIDGVERVFYEMCNECEDKCRW-TTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLD 301 (485)
Q Consensus 223 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (485)
.|.....++.|+..+.+.+. ..|+. .-|+.-+.++.+..+++.+..--.+..+..|........+..+......++
T Consensus 19 k~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 34555667777777776665 34444 455667777778888888888777777777766667777777777777888
Q ss_pred hHHHHHHHhh
Q 048394 302 AVNRVWGILK 311 (485)
Q Consensus 302 ~a~~~~~~~~ 311 (485)
.|+..+.+..
T Consensus 96 eaI~~Lqra~ 105 (284)
T KOG4642|consen 96 EAIKVLQRAY 105 (284)
T ss_pred HHHHHHHHHH
Confidence 8888777663
No 353
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=86.06 E-value=10 Score=27.01 Aligned_cols=80 Identities=10% Similarity=0.035 Sum_probs=53.3
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHHHHHH
Q 048394 90 GRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEK 169 (485)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 169 (485)
...++|..+-+++...+-. ...+-..-+..+...|++++|..+.+... .||...|-+|.. .+.|.-+++..-+.+
T Consensus 19 HcHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~--~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC--YPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred hHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC--CchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 4567888888887766421 22222222345667888888888887775 488888877654 466777777777777
Q ss_pred HHhCC
Q 048394 170 MDELK 174 (485)
Q Consensus 170 m~~~~ 174 (485)
|...|
T Consensus 94 la~sg 98 (115)
T TIGR02508 94 LAASG 98 (115)
T ss_pred HHhCC
Confidence 77665
No 354
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=85.80 E-value=30 Score=32.25 Aligned_cols=57 Identities=12% Similarity=0.064 Sum_probs=37.6
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 048394 394 ESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVL 455 (485)
Q Consensus 394 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 455 (485)
..|+.-|...|+..+|..+++++--- +-....++.+++.+..+.|+-..-..+++..
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP-----fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~c 569 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP-----FFHHEVVKKALVMVMEKKGDSTMILDLLKEC 569 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC-----cchHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 56778888999999999888875221 3334556677777777777755444444433
No 355
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=85.35 E-value=2.2 Score=22.59 Aligned_cols=30 Identities=7% Similarity=-0.038 Sum_probs=20.7
Q ss_pred CChhhHHHHHHHHhhcCCCCHHHHHHHHHH
Q 048394 443 KDVDGAEEFCKVLKSLNCLDFSAYSLLIKT 472 (485)
Q Consensus 443 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 472 (485)
|+.+.|..+|+++....|.++..|..++..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 456677777777777777777777766654
No 356
>PRK10941 hypothetical protein; Provisional
Probab=85.05 E-value=9.4 Score=33.44 Aligned_cols=67 Identities=13% Similarity=-0.030 Sum_probs=52.2
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHH
Q 048394 394 ESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSA 465 (485)
Q Consensus 394 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 465 (485)
+.+-.+|.+.++++.|+.+.+.++.. .+.++.-+.--.-.|.+.|.+..|..-++..++..|.++.+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l-----~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQF-----DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 44556778889999999999998887 44556667766777888899999998888888888776554
No 357
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=84.82 E-value=19 Score=29.05 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=23.0
Q ss_pred cHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhh
Q 048394 405 QLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEE 441 (485)
Q Consensus 405 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 441 (485)
.+++|.+.|++..+.. |+...|+.-+....+
T Consensus 95 ~F~kA~~~FqkAv~~~------P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 95 YFEKATEYFQKAVDED------PNNELYRKSLEMAAK 125 (186)
T ss_dssp HHHHHHHHHHHHHHH-------TT-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHh
Confidence 3677888888888865 999999988877653
No 358
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=84.73 E-value=4.3 Score=25.12 Aligned_cols=32 Identities=13% Similarity=0.094 Sum_probs=19.2
Q ss_pred HHHHHhhcCChhhHHHHHHHHhhcCCCCHHHH
Q 048394 435 FFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAY 466 (485)
Q Consensus 435 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 466 (485)
+.-++.+.|+++.|.+..+.+++..|.|..+-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 33456666777777777777777777665543
No 359
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.26 E-value=2 Score=22.26 Aligned_cols=29 Identities=17% Similarity=0.102 Sum_probs=14.9
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHhhcCC
Q 048394 432 VDTFFRFFEEEKDVDGAEEFCKVLKSLNC 460 (485)
Q Consensus 432 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 460 (485)
|..+...+...|+++.|...++..++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34444455555555555555555554433
No 360
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=84.00 E-value=14 Score=26.76 Aligned_cols=82 Identities=10% Similarity=0.047 Sum_probs=51.7
Q ss_pred HcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHHHH
Q 048394 88 KFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALF 167 (485)
Q Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 167 (485)
.....++|..+.+++...+. ....+-...+..+.+.|++++| +..-.....||...|-+|-. .+.|--+++...+
T Consensus 18 G~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l 92 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA--LLLPQCHCYPDLEPWAALCA--WKLGLASALESRL 92 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH--HHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH--HHhcccCCCccHHHHHHHHH--HhhccHHHHHHHH
Confidence 34568899999999988763 2222223334466788999999 33333335688888877654 4788888888888
Q ss_pred HHHHhCC
Q 048394 168 EKMDELK 174 (485)
Q Consensus 168 ~~m~~~~ 174 (485)
.++...|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 8887765
No 361
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=83.98 E-value=7.5 Score=28.97 Aligned_cols=58 Identities=12% Similarity=0.148 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHH
Q 048394 410 LNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIK 471 (485)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 471 (485)
.+-++.+..-. ..|++.+...-+++|.+.+|+..|.++++-+...-++....|-.+++
T Consensus 69 rkglN~l~~yD----lVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 69 RKGLNNLFDYD----LVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHhhhccc----cCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 34455555544 88999999999999999999999999999888766554445554443
No 362
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=83.74 E-value=30 Score=30.42 Aligned_cols=114 Identities=7% Similarity=0.104 Sum_probs=67.1
Q ss_pred CHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh-cc-cHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcCChhhHH
Q 048394 229 DIDGVERVFYEMCNECEDKCRWTTYSNLASIYVK-AE-LFEKAELALKKLEE--MKPRDRKAYHFLISLYCNTSNLDAVN 304 (485)
Q Consensus 229 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~-~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~ 304 (485)
.+.+|+++|+....+..+..|..+...+++.... .+ ....-.++.+-+.. ...++..+...+++.++..++|..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 3445556665332211344556665556665554 21 22222233333333 24456677777778888888888888
Q ss_pred HHHHHhhhc-CCC-ChhhHHHHHHHHHhcCChhHHHHHHH
Q 048394 305 RVWGILKST-FPP-TNTSYLVLLQALAKLNAIDILKQCFE 342 (485)
Q Consensus 305 ~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 342 (485)
++|+..... ++. |...|..++......|+..-..++..
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 877776665 444 77778888888888887666555554
No 363
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=83.45 E-value=42 Score=31.94 Aligned_cols=362 Identities=13% Similarity=0.094 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCC-CHhHHHHHHH-HHHhcCcHHHHHHHHHHH
Q 048394 93 RHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAK-NRYTYGALLN-CYCKELMTERALALFEKM 170 (485)
Q Consensus 93 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~-~~~~~~~~~~A~~~~~~m 170 (485)
.....+|+....+ ...|...|...+..+-+.+.+.+.-.+|..|....| ++..|-.-.. -|-...+++.|..+|.+-
T Consensus 88 ~rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 88 NRIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 3445566655443 234888899999888888889999999999988333 3445543332 233344589999999888
Q ss_pred HhCCCCCChhhHHHHHHH---HH-hCC--------CcccH-HHHHHHH-HHcCCCccHHHH--HHH-H--HHHHhcCCHh
Q 048394 171 DELKFLGNTVAFNNLSTM---YL-RLG--------QPEKV-RPLVNQM-KQRNISLDNLTY--IVW-M--QSYSHLNDID 231 (485)
Q Consensus 171 ~~~~~~p~~~~~~~l~~~---~~-~~g--------~~~~a-~~~~~~~-~~~~~~p~~~~~--~~l-~--~~~~~~~~~~ 231 (485)
++.+.. ++..|-...+. |. +.. +.+.- .++-+.= ......++..+. ..- + ..........
T Consensus 167 LR~npd-sp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~k 245 (568)
T KOG2396|consen 167 LRFNPD-SPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLK 245 (568)
T ss_pred hhcCCC-ChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHH
Confidence 876533 33444433332 21 110 00000 0000000 000001111100 000 0 0000000000
Q ss_pred H-HHHHHHHHHhccCCCCcHHHHHHHH----HHHHh---------------cccHHHHHHHHHHHHhcCCCChHHHHHHH
Q 048394 232 G-VERVFYEMCNECEDKCRWTTYSNLA----SIYVK---------------AELFEKAELALKKLEEMKPRDRKAYHFLI 291 (485)
Q Consensus 232 ~-a~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---------------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 291 (485)
+ -..+.+.+.. +.+.++.++.-+. ..+.+ .-+.+....+|+...+-. ++...|+..|
T Consensus 246 el~k~i~d~~~~--~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l-~t~sm~e~YI 322 (568)
T KOG2396|consen 246 ELQKNIIDDLQS--KAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTL-PTESMWECYI 322 (568)
T ss_pred HHHHHHHHHHhc--cCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 1 1112223322 2333322221121 11111 112233445666655422 3556676677
Q ss_pred HHHHhcC------ChhhHHHHHHHhhhcCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHH
Q 048394 292 SLYCNTS------NLDAVNRVWGILKSTFPP---TNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRA 362 (485)
Q Consensus 292 ~~~~~~~------~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 362 (485)
..|...- .......+|+.....+.. ...-|..+...++..... ...-..+...+..-+...|-.-+..
T Consensus 323 ~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~---r~~a~~l~~e~f~~s~k~~~~kl~~ 399 (568)
T KOG2396|consen 323 TFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEA---REVAVKLTTELFRDSGKMWQLKLQV 399 (568)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchH---hHHHHHhhHHHhcchHHHHHHHHHH
Confidence 6665432 333444555555444332 455566666555554443 2222223323334466666555555
Q ss_pred HHhc-CcHHHH-HHHHHHHHhcccccCCchhHHHHHHHHHHhccc-HHHH--HHHHHHHHHHhhhcCCCccHHHH-HHHH
Q 048394 363 YLQK-DMYEEA-ALIFNNAKKRANASARFFKSRESFMIYYLRSRQ-LDLA--LNEMEAALSEAKQFHWRPMQVTV-DTFF 436 (485)
Q Consensus 363 ~~~~-~~~~~A-~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A--~~~~~~~~~~~~~~~~~~~~~~~-~~l~ 436 (485)
..+. .+++-- ..+|......-. .+....|+... .|+ .... ..++....+. ..|+..++ +.++
T Consensus 400 ~~~s~sD~q~~f~~l~n~~r~~~~--s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~-----~~~~~~tl~s~~l 467 (568)
T KOG2396|consen 400 LIESKSDFQMLFEELFNHLRKQVC--SELLISWASAS-----EGDSLQEDTLDLIISALLSV-----IGADSVTLKSKYL 467 (568)
T ss_pred HHhhcchhHHHHHHHHHHHHHHhc--chhHHHHHHHh-----hccchhHHHHHHHHHHHHHh-----cCCceeehhHHHH
Confidence 4432 122211 112222222211 23333343333 222 2211 1233333333 34555554 5677
Q ss_pred HHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 048394 437 RFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYI 474 (485)
Q Consensus 437 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 474 (485)
..+.+.|-+++|.+.+..+..+.|++...|..+++.-.
T Consensus 468 ~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~ 505 (568)
T KOG2396|consen 468 DWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEK 505 (568)
T ss_pred HHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHh
Confidence 88888999999999999999999999888888877643
No 364
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=83.20 E-value=8.2 Score=28.79 Aligned_cols=45 Identities=13% Similarity=0.170 Sum_probs=30.5
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 048394 198 VRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCN 242 (485)
Q Consensus 198 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (485)
..+-++.+...++.|++.....-+++|.+.+|+..|.++|+.+..
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334455555556677777777777777777777777777777765
No 365
>PRK10941 hypothetical protein; Provisional
Probab=83.04 E-value=21 Score=31.28 Aligned_cols=63 Identities=14% Similarity=0.092 Sum_probs=48.4
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC
Q 048394 254 SNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP 316 (485)
Q Consensus 254 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 316 (485)
+.+-.+|.+.++++.|+.+.+.+....|.++.-+..-.-.|.+.|.+..|..=++...+..|.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 446667777888888888888888877777777777777788888888888777777776666
No 366
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=82.98 E-value=32 Score=30.22 Aligned_cols=115 Identities=9% Similarity=0.094 Sum_probs=75.0
Q ss_pred cccHHHHHHHHHH-cCCCccHHHHHHHHHHHHh--cCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHH
Q 048394 195 PEKVRPLVNQMKQ-RNISLDNLTYIVWMQSYSH--LNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAEL 271 (485)
Q Consensus 195 ~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 271 (485)
..+|+++|+.... ..+--|..+...+++.... ......--++.+-+....+..++..+...++..++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3455555552211 1244455666666665544 223334445555555545577777777888889999999999888
Q ss_pred HHHHHHhc--CCCChHHHHHHHHHHHhcCChhhHHHHHHH
Q 048394 272 ALKKLEEM--KPRDRKAYHFLISLYCNTSNLDAVNRVWGI 309 (485)
Q Consensus 272 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 309 (485)
+++..... +..|...|..+++.....|+..-...+.+.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 88887663 456788899999999999987766655553
No 367
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.77 E-value=40 Score=31.14 Aligned_cols=93 Identities=10% Similarity=0.029 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHc---------CCCccH
Q 048394 146 TYGALLNCYCKELMTERALALFEKMDELK--FLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQR---------NISLDN 214 (485)
Q Consensus 146 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~p~~ 214 (485)
.+.-+...|..+|+++.|++.+.+...-- .+-.+..|-.+|..-.-.|+|..+..+..+..+. .+.+-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 44445555555555555555555532210 0112223444444444455554444444443332 133334
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHH
Q 048394 215 LTYIVWMQSYSHLNDIDGVERVFYEM 240 (485)
Q Consensus 215 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 240 (485)
..+..+...+.+ ++..|.+.|-..
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~~ 255 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLLA 255 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhC
Confidence 444444443333 555555554443
No 368
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=81.59 E-value=63 Score=32.62 Aligned_cols=371 Identities=14% Similarity=0.070 Sum_probs=179.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCC----CChhhHHHH-HHHHHhhCCHHHHHHHHHhhcc---cCCC--HhHHHHHH
Q 048394 82 CVRSLRKFGRYRHALEVIEWMESRKMH----FSYTDFAVY-LDLTAKTNGIAAAEKYFNGLSE---YAKN--RYTYGALL 151 (485)
Q Consensus 82 l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~---~~~~--~~~~~~li 151 (485)
+++.+.+.+.. .|...++...+.--. +-...|..+ +..+...++...|.+.++.+.. ...| ..++-.++
T Consensus 106 l~~i~~~~~~~-~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~ 184 (608)
T PF10345_consen 106 LARIYFKTNPK-AALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLS 184 (608)
T ss_pred HHHHHHhcCHH-HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Confidence 34444444444 498888886443211 122223333 2233334799999999988776 1233 33444444
Q ss_pred HHHH--hcCcHHHHHHHHHHHHhCCC---------CCChhhHHHHHHHH--HhCCCcccHHHHHHHHHH-------cC-C
Q 048394 152 NCYC--KELMTERALALFEKMDELKF---------LGNTVAFNNLSTMY--LRLGQPEKVRPLVNQMKQ-------RN-I 210 (485)
Q Consensus 152 ~~~~--~~~~~~~A~~~~~~m~~~~~---------~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~-------~~-~ 210 (485)
.+.. +.+..+++.+.++++..... .|-..+|..++..+ ...|+++.+...++++.+ .. .
T Consensus 185 ~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w 264 (608)
T PF10345_consen 185 EALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSW 264 (608)
T ss_pred HHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccC
Confidence 4443 45667778777777743221 23455677776655 456776677766655543 10 0
Q ss_pred ---C-------------------ccHHHH---------HHHHH--HHHhcCCHhHHHHHHHH-------HH-hccCCCC-
Q 048394 211 ---S-------------------LDNLTY---------IVWMQ--SYSHLNDIDGVERVFYE-------MC-NECEDKC- 248 (485)
Q Consensus 211 ---~-------------------p~~~~~---------~~l~~--~~~~~~~~~~a~~~~~~-------~~-~~~~~~~- 248 (485)
. |....| .-++. ..+..+..+.|.+++++ .. .....++
T Consensus 265 ~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~ 344 (608)
T PF10345_consen 265 PSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSE 344 (608)
T ss_pred CCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCc
Confidence 0 111111 11122 22334444455555544 33 1001111
Q ss_pred cH------HHHHH---------HHHHHHhcccHHHHHHHHHHHHhc---CCC------ChHHHHHHHHHHHhcCChhhHH
Q 048394 249 RW------TTYSN---------LASIYVKAELFEKAELALKKLEEM---KPR------DRKAYHFLISLYCNTSNLDAVN 304 (485)
Q Consensus 249 ~~------~~~~~---------l~~~~~~~~~~~~A~~~~~~~~~~---~~~------~~~~~~~l~~~~~~~~~~~~a~ 304 (485)
+. ..+.. .+-..+-.+++..|...++.+.+. .|+ .+..+....-.+...|+.+.|.
T Consensus 345 sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~ 424 (608)
T PF10345_consen 345 SLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAAL 424 (608)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHH
Confidence 11 11111 112233468899999999988872 111 1333444444455789999999
Q ss_pred HHHH--------HhhhcCCC-ChhhHHH--HHHHHHhcC--ChhH--HHHHHHHHHHc---cCCCCHHhHHHH-HHHHHh
Q 048394 305 RVWG--------ILKSTFPP-TNTSYLV--LLQALAKLN--AIDI--LKQCFEEWESR---CSSYDMRLADVI-IRAYLQ 365 (485)
Q Consensus 305 ~~~~--------~~~~~~~~-~~~~~~~--l~~~~~~~~--~~~~--a~~~~~~~~~~---~~~~~~~~~~~l-~~~~~~ 365 (485)
..|. .....++. +...+.. ++..+...+ +.++ +.++++.+... ....+..++..+ +.++..
T Consensus 425 ~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~ 504 (608)
T PF10345_consen 425 YQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNT 504 (608)
T ss_pred HHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhh
Confidence 9997 44444444 3333222 111222222 2223 66677766442 122233344433 333332
Q ss_pred cC--cHHHHHHHHHHHHhcc--cccCCch----hHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHH--
Q 048394 366 KD--MYEEAALIFNNAKKRA--NASARFF----KSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTF-- 435 (485)
Q Consensus 366 ~~--~~~~A~~~~~~~~~~~--~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l-- 435 (485)
.. ...++...+.+..+.- . ..+. .+++.+..-+. .|+..+..+............ ..-....|..+
T Consensus 505 ~~~~~~ne~k~~l~~~L~~~~~~--~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~-~d~~~~LW~~v~~ 580 (608)
T PF10345_consen 505 FEPFSSNEAKRHLQEALKMANNK--LGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKS-SDYSDQLWHLVAS 580 (608)
T ss_pred CCccccHHHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHH
Confidence 21 2234554444332211 1 1111 12232222233 688887776666655443111 11133455333
Q ss_pred ---HHHHhhcCChhhHHHHHHHHhh
Q 048394 436 ---FRFFEEEKDVDGAEEFCKVLKS 457 (485)
Q Consensus 436 ---~~~~~~~~~~~~A~~~~~~~~~ 457 (485)
...+...|+.++|.....+...
T Consensus 581 ~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 581 GMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 3457788999999988877654
No 369
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.47 E-value=30 Score=28.93 Aligned_cols=77 Identities=9% Similarity=-0.059 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHH
Q 048394 321 YLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMI 398 (485)
Q Consensus 321 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~ 398 (485)
.+..++.+.+.+.+.+++...++-.+..+. |...-..+++.|+-.|++++|..-++-.-.......+-..+|..+|.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 344456666777777777777766666544 56666667777777888888777666555442111333444555443
No 370
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=79.51 E-value=80 Score=32.56 Aligned_cols=224 Identities=13% Similarity=0.046 Sum_probs=120.8
Q ss_pred HHhcCcHHHHHHHHHHHHhCCCCCChh-------hHHHHHH-HHHhCCCcccHHHHHHHHHHc----CCCccHHHHHHHH
Q 048394 154 YCKELMTERALALFEKMDELKFLGNTV-------AFNNLST-MYLRLGQPEKVRPLVNQMKQR----NISLDNLTYIVWM 221 (485)
Q Consensus 154 ~~~~~~~~~A~~~~~~m~~~~~~p~~~-------~~~~l~~-~~~~~g~~~~a~~~~~~~~~~----~~~p~~~~~~~l~ 221 (485)
.....++.+|..++.+....-..|+.. .|+.+-. .....|++++|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345688999999888876543333322 3444332 234578889999988887654 1223445556666
Q ss_pred HHHHhcCCHhHHHHHHHHHHhccCCCCcHHHH---HHH--HHHHHhccc--HHHHHHHHHHHHh----cCC---CChHHH
Q 048394 222 QSYSHLNDIDGVERVFYEMCNECEDKCRWTTY---SNL--ASIYVKAEL--FEKAELALKKLEE----MKP---RDRKAY 287 (485)
Q Consensus 222 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~l--~~~~~~~~~--~~~A~~~~~~~~~----~~~---~~~~~~ 287 (485)
.+..-.|++++|..+..+..+ ..-..+...+ ..+ ...+...|. +.+.+..|..... ..+ +-..++
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~-~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQ-MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 777788999999998887766 2222222222 222 233445563 3333334444333 111 123344
Q ss_pred HHHHHHHHhcC-ChhhHHHHHHHhhhcCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHHccCCC----CHHhHHHH
Q 048394 288 HFLISLYCNTS-NLDAVNRVWGILKSTFPPTN---TSYLVLLQALAKLNAIDILKQCFEEWESRCSSY----DMRLADVI 359 (485)
Q Consensus 288 ~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l 359 (485)
..+..++.+.. ...++..-++......+... ..+..|+......|+.++|...+.++......+ +...-...
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 45555554411 11222222222222222221 222367778888999999999999887654333 22222222
Q ss_pred HH--HHHhcCcHHHHHHHHHH
Q 048394 360 IR--AYLQKDMYEEAALIFNN 378 (485)
Q Consensus 360 ~~--~~~~~~~~~~A~~~~~~ 378 (485)
+. .....|+.+++.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 22 23457888877776655
No 371
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=79.47 E-value=58 Score=30.97 Aligned_cols=40 Identities=15% Similarity=0.048 Sum_probs=23.5
Q ss_pred HcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCH
Q 048394 88 KFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGI 127 (485)
Q Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 127 (485)
..+.++..++++..+...|.......++.....|.+.|..
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~t 68 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCT 68 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccc
Confidence 3456666666666666666544445556555556555543
No 372
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=79.36 E-value=4.8 Score=25.89 Aligned_cols=29 Identities=7% Similarity=-0.062 Sum_probs=13.9
Q ss_pred CHhHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 048394 143 NRYTYGALLNCYCKELMTERALALFEKMD 171 (485)
Q Consensus 143 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 171 (485)
|..-.-.+|.++...|++++|.++++++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33334444555555555555555555443
No 373
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.69 E-value=3.4 Score=20.90 Aligned_cols=14 Identities=14% Similarity=-0.014 Sum_probs=5.3
Q ss_pred HHHHhcccHHHHHH
Q 048394 258 SIYVKAELFEKAEL 271 (485)
Q Consensus 258 ~~~~~~~~~~~A~~ 271 (485)
..+...|++++|..
T Consensus 9 ~~~~~~G~~~eA~~ 22 (26)
T PF07721_consen 9 RALLAQGDPDEAER 22 (26)
T ss_pred HHHHHcCCHHHHHH
Confidence 33333333333333
No 374
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=78.22 E-value=4.9 Score=23.69 Aligned_cols=20 Identities=25% Similarity=0.159 Sum_probs=7.8
Q ss_pred HHHHhcCcHHHHHHHHHHHH
Q 048394 152 NCYCKELMTERALALFEKMD 171 (485)
Q Consensus 152 ~~~~~~~~~~~A~~~~~~m~ 171 (485)
.+|...|+.+.|.+++++..
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 33333344444444333333
No 375
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=77.88 E-value=79 Score=31.57 Aligned_cols=75 Identities=16% Similarity=0.090 Sum_probs=35.1
Q ss_pred HHHHHHhhhcCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 048394 304 NRVWGILKSTFPP-TNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAK 380 (485)
Q Consensus 304 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 380 (485)
....+.+...-|. +......++..|.+.|-.+.|.++.+.+-..-.. ..-|..-+.-+.++|+...+..+.+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555555555 6667777888888888888888888766554222 2334445555666666665555554444
No 376
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.41 E-value=6.7 Score=23.11 Aligned_cols=22 Identities=18% Similarity=0.219 Sum_probs=10.2
Q ss_pred HHHHHhcccHHHHHHHHHHHHH
Q 048394 397 MIYYLRSRQLDLALNEMEAALS 418 (485)
Q Consensus 397 ~~~~~~~g~~~~A~~~~~~~~~ 418 (485)
..+|...|+.+.|.+++++.+.
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3444444444444444444443
No 377
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=77.11 E-value=11 Score=24.18 Aligned_cols=47 Identities=11% Similarity=0.111 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 048394 369 YEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSE 419 (485)
Q Consensus 369 ~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 419 (485)
++....+++.+... +-|..-.-.+|.+|...|++++|.++++++...
T Consensus 6 ~~~~~~~~~~lR~~----RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 6 LEELEELIDSLRAQ----RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34444445444433 222233345567777777777777777776654
No 378
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.47 E-value=9.2 Score=25.86 Aligned_cols=49 Identities=10% Similarity=0.041 Sum_probs=28.9
Q ss_pred hcCcHHHHHHHHHHHHhcccccCCc--hhHHHHHHHHHHhcccHHHHHHHHHH
Q 048394 365 QKDMYEEAALIFNNAKKRANASARF--FKSRESFMIYYLRSRQLDLALNEMEA 415 (485)
Q Consensus 365 ~~~~~~~A~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 415 (485)
..++.++|+..|....+.-. .|. -.++..++.+|+..|++.+++.+--.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~--~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKIT--DREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred ccchHHHHHHHHHHHHhhcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777666533 221 23455566677777777776665443
No 379
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=76.25 E-value=57 Score=29.07 Aligned_cols=130 Identities=13% Similarity=-0.054 Sum_probs=71.2
Q ss_pred ChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHh----cCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhc-----
Q 048394 333 AIDILKQCFEEWESRCSSYDMRLADVIIRAYLQ----KDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRS----- 403 (485)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----- 403 (485)
+...|.+.|....+.|. ......|...|.. ..+..+|...|++..+.|. .+...+...+...|..-
T Consensus 92 ~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~--~~a~~~~~~l~~~~~~g~~~~~ 166 (292)
T COG0790 92 DKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGN--VEAALAMYRLGLAYLSGLQALA 166 (292)
T ss_pred cHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHHHcChhhhc
Confidence 35566666665555442 2222234444444 3367778888887777764 32222233333333322
Q ss_pred c--cHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH----hhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhC
Q 048394 404 R--QLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFF----EEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAG 477 (485)
Q Consensus 404 g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 477 (485)
- +...|..+|.++...+ +......+...| .-..|.++|..+|++..+.+. ......+. .+...|
T Consensus 167 ~~~~~~~A~~~~~~aa~~~-------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 167 VAYDDKKALYLYRKAAELG-------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred ccHHHHhHHHHHHHHHHhc-------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 1 2346888888887773 233333333333 234478888888888888766 55555555 555554
No 380
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=75.21 E-value=26 Score=24.65 Aligned_cols=55 Identities=15% Similarity=0.045 Sum_probs=28.3
Q ss_pred cCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC--ChhhHHHHHHHHHhcCC
Q 048394 279 MKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP--TNTSYLVLLQALAKLNA 333 (485)
Q Consensus 279 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~ 333 (485)
..|.|...-..+...+...|++++|++.+-.+.+.... +...-..++..+.-.|.
T Consensus 17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 44555566666666666666666666666665555443 34444444444444444
No 381
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=74.86 E-value=58 Score=28.52 Aligned_cols=84 Identities=13% Similarity=0.028 Sum_probs=44.1
Q ss_pred CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHH
Q 048394 247 KCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQ 326 (485)
Q Consensus 247 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 326 (485)
.-++.....+...|.+.|++.+|+..|-. ...++...+..++......|...++--++ ...+-
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~---~~~~~~~~~~~ll~~~~~~~~~~e~dlfi--------------~RaVL 149 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFLL---GTDPSAFAYVMLLEEWSTKGYPSEADLFI--------------ARAVL 149 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHT---S-HHHHHHHHHHHHHHHHHTSS--HHHHH--------------HHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHh---cCChhHHHHHHHHHHHHHhcCCcchhHHH--------------HHHHH
Confidence 34566677788888888888888876633 22222222222443333344433332221 22344
Q ss_pred HHHhcCChhHHHHHHHHHHHc
Q 048394 327 ALAKLNAIDILKQCFEEWESR 347 (485)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~ 347 (485)
-|...++...|...++...+.
T Consensus 150 ~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 150 QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 455678888888877766554
No 382
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=74.74 E-value=55 Score=28.66 Aligned_cols=86 Identities=10% Similarity=0.054 Sum_probs=40.6
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHh-cCCCChHHHHHHHHHHH----
Q 048394 221 MQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEE-MKPRDRKAYHFLISLYC---- 295 (485)
Q Consensus 221 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~---- 295 (485)
|++++..|++.++....-+--+ .....-..+...-|-.|.+.+.+..+.++-..-.. -...+..-|..+++.|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq-~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQ-VPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhc-CcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 4556666666665554433332 11112222333344555566666666555554444 11122333555444443
Q ss_pred -hcCChhhHHHHH
Q 048394 296 -NTSNLDAVNRVW 307 (485)
Q Consensus 296 -~~~~~~~a~~~~ 307 (485)
-.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 356666666554
No 383
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=74.73 E-value=27 Score=24.70 Aligned_cols=59 Identities=17% Similarity=0.075 Sum_probs=32.8
Q ss_pred HhcccHHHHHHHHHHHHHHhhhcCCCcc----HHHHHHHHHHHhhcCChhhHHHHHHHHhhcC
Q 048394 401 LRSRQLDLALNEMEAALSEAKQFHWRPM----QVTVDTFFRFFEEEKDVDGAEEFCKVLKSLN 459 (485)
Q Consensus 401 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 459 (485)
.+.|++.+|.+.+.+..+.......... ......+.......|++++|...++++++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4567777776666666554322212221 1222333455566777777777777776643
No 384
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.56 E-value=6 Score=35.24 Aligned_cols=91 Identities=13% Similarity=-0.017 Sum_probs=53.2
Q ss_pred hcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 048394 262 KAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCF 341 (485)
Q Consensus 262 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 341 (485)
..|.++.|++.|-..+...|+....|..-.+++.+.+++..|++=+......++.+...|-.-..+..-.|++++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 34556666666666666666566666666666666666666666666665555554444444444444556666666666
Q ss_pred HHHHHccCCCC
Q 048394 342 EEWESRCSSYD 352 (485)
Q Consensus 342 ~~~~~~~~~~~ 352 (485)
....+.+..+.
T Consensus 206 ~~a~kld~dE~ 216 (377)
T KOG1308|consen 206 ALACKLDYDEA 216 (377)
T ss_pred HHHHhccccHH
Confidence 66666555433
No 385
>PHA02875 ankyrin repeat protein; Provisional
Probab=74.06 E-value=40 Score=31.95 Aligned_cols=210 Identities=10% Similarity=-0.016 Sum_probs=94.1
Q ss_pred HHHhhCCHHHHHHHHHhhcccCCCHh--HHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhCCCc
Q 048394 120 LTAKTNGIAAAEKYFNGLSEYAKNRY--TYGALLNCYCKELMTERALALFEKMDELKFLGNTV--AFNNLSTMYLRLGQP 195 (485)
Q Consensus 120 ~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~~ 195 (485)
..++.|+.+-+..+++.-.. |+.. ...+.+...+..|+.+- .+.+.+.|..|+.. .....+...+..|+.
T Consensus 8 ~A~~~g~~~iv~~Ll~~g~~--~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 8 DAILFGELDIARRLLDIGIN--PNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHHHhCCHHHHHHHHHCCCC--CCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 34456888777777765333 3322 22334455566777653 34444556554432 122344555667776
Q ss_pred ccHHHHHHHHHHcCCCccHH---HHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHH--HHHHHHHHHhcccHHHHH
Q 048394 196 EKVRPLVNQMKQRNISLDNL---TYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTT--YSNLASIYVKAELFEKAE 270 (485)
Q Consensus 196 ~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~ 270 (485)
+.+..++ +.|...+.. .-.+.+...+..|+.+-+..+++ .|..++... -.+.+...+..|+.+-+.
T Consensus 82 ~~v~~Ll----~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~-----~gad~~~~~~~g~tpLh~A~~~~~~~~v~ 152 (413)
T PHA02875 82 KAVEELL----DLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIA-----RGADPDIPNTDKFSPLHLAVMMGDIKGIE 152 (413)
T ss_pred HHHHHHH----HcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHh-----CCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 5544433 443222111 11223444455666654443333 233322110 012344455677776655
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048394 271 LALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP----TNTSYLVLLQALAKLNAIDILKQCFEEWES 346 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 346 (485)
.+++.-......+..-.+.+. ..+..|+.+-+..+ .+.|.. +.....+.+...+..|+. ++.+.+.+
T Consensus 153 ~Ll~~g~~~~~~d~~g~TpL~-~A~~~g~~eiv~~L----l~~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv~~Ll~ 223 (413)
T PHA02875 153 LLIDHKACLDIEDCCGCTPLI-IAMAKGDIAICKML----LDSGANIDYFGKNGCVAALCYAIENNKI----DIVRLFIK 223 (413)
T ss_pred HHHhcCCCCCCCCCCCCCHHH-HHHHcCCHHHHHHH----HhCCCCCCcCCCCCCchHHHHHHHcCCH----HHHHHHHH
Confidence 555432211112222222332 33345665544333 333332 111122344434455654 34555566
Q ss_pred ccCCCCH
Q 048394 347 RCSSYDM 353 (485)
Q Consensus 347 ~~~~~~~ 353 (485)
.|..++.
T Consensus 224 ~gad~n~ 230 (413)
T PHA02875 224 RGADCNI 230 (413)
T ss_pred CCcCcch
Confidence 7776664
No 386
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.82 E-value=59 Score=28.18 Aligned_cols=266 Identities=11% Similarity=0.091 Sum_probs=156.1
Q ss_pred CCCCCChhhHHHHHHHH-HhhCCHHHHHHHHHhhcccCCCH-----hHHHHHHHHHHhcCcHHHHHHHHHHHHhC---CC
Q 048394 105 RKMHFSYTDFAVYLDLT-AKTNGIAAAEKYFNGLSEYAKNR-----YTYGALLNCYCKELMTERALALFEKMDEL---KF 175 (485)
Q Consensus 105 ~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~ 175 (485)
.+-+||+..=|..-..- .+...+++|+.-|++..+..+.- .....+|..+.+.+++++....+.+|..- .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 34456665444332221 24558899999999988844432 34456788888999999999988888531 11
Q ss_pred C--CChhhHHHHHHHHHhCCCcccHHHHHHHHHHc-----CCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCC-
Q 048394 176 L--GNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQR-----NISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDK- 247 (485)
Q Consensus 176 ~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~- 247 (485)
. -+..+.|+++..-....+.+-...+|+.-.+. +-..--.|-+-|...|...+++....++++++.+.....
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 1 13445678887777777777777776655432 111112234567778888888988888888887732211
Q ss_pred ---------CcHHHHHHHHHHHHhcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHH-----HhcCChhhHHH-HHHHh
Q 048394 248 ---------CRWTTYSNLASIYVKAELFEKAELALKKLEE--MKPRDRKAYHFLISLY-----CNTSNLDAVNR-VWGIL 310 (485)
Q Consensus 248 ---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~-----~~~~~~~~a~~-~~~~~ 310 (485)
.-...|..-+..|....+-.+-..++++... ..-|.+.... .|+-| .+.|.+++|.. +|+..
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHH
Confidence 1134577777888888887777788887765 2224444443 33333 35677777653 44433
Q ss_pred h---hcCCC---ChhhHHHHHHHHHhcCC--hhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHH
Q 048394 311 K---STFPP---TNTSYLVLLQALAKLNA--IDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFN 377 (485)
Q Consensus 311 ~---~~~~~---~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 377 (485)
+ +.|.+ ...-|..|.+.+.+.|- ++. ++.....-.|.....+.|+.+|.. +++.+-.+++.
T Consensus 259 KNYDEsGspRRttCLKYLVLANMLmkS~iNPFDs-----QEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~ 327 (440)
T KOG1464|consen 259 KNYDESGSPRRTTCLKYLVLANMLMKSGINPFDS-----QEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILK 327 (440)
T ss_pred hcccccCCcchhHHHHHHHHHHHHHHcCCCCCcc-----cccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 3 33443 22334555666655542 110 011111234556677778888765 45555555544
No 387
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=73.70 E-value=62 Score=28.34 Aligned_cols=86 Identities=10% Similarity=0.051 Sum_probs=42.6
Q ss_pred HHHHHhcCChhhHHHHHHHhhhcCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHH-----
Q 048394 291 ISLYCNTSNLDAVNRVWGILKSTFPP-TNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYL----- 364 (485)
Q Consensus 291 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 364 (485)
|.+++..++|.++....-+--+...+ .......-|-.|.+.+....+.++-.......-.-+..-|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 45555666666655544433333222 444555555556666666666666555554322222333444444333
Q ss_pred hcCcHHHHHHHH
Q 048394 365 QKDMYEEAALIF 376 (485)
Q Consensus 365 ~~~~~~~A~~~~ 376 (485)
=.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 346666665554
No 388
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=73.34 E-value=42 Score=31.33 Aligned_cols=57 Identities=16% Similarity=0.021 Sum_probs=37.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHccCCCCHH--hHHHHHHHHH--hcCcHHHHHHHHHHHHhc
Q 048394 325 LQALAKLNAIDILKQCFEEWESRCSSYDMR--LADVIIRAYL--QKDMYEEAALIFNNAKKR 382 (485)
Q Consensus 325 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~A~~~~~~~~~~ 382 (485)
+..+.+.+++..|.+++..+.+. +.++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44455778888888888888876 444443 3444445443 466777888888877655
No 389
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=73.16 E-value=28 Score=28.20 Aligned_cols=41 Identities=15% Similarity=0.211 Sum_probs=27.9
Q ss_pred HHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCC
Q 048394 397 MIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKD 444 (485)
Q Consensus 397 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 444 (485)
+..|.+.|.+++|.+++++.... |+......-+....+.+|
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d-------~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSD-------PESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcC-------CCchhHHHHHHHHHHccc
Confidence 45688899999999999888774 555554555555555544
No 390
>PRK14136 recX recombination regulator RecX; Provisional
Probab=72.80 E-value=69 Score=28.49 Aligned_cols=28 Identities=29% Similarity=0.177 Sum_probs=11.7
Q ss_pred CCCcHHHHHHHHHHhCCCCCHHHHHHHH
Q 048394 56 TGGSVTGALNAYIMEGKTVRKDMLEYCV 83 (485)
Q Consensus 56 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 83 (485)
....++.+++.+.+.|...|......++
T Consensus 192 ~ee~IE~VIerLke~gYLDDeRFAesyV 219 (309)
T PRK14136 192 ESDSVEPLLDALEREGWLSDARFAESLV 219 (309)
T ss_pred CHHHHHHHHHHHHHcCCcCHHHHHHHHH
Confidence 3344444444444444433333333333
No 391
>PRK09687 putative lyase; Provisional
Probab=72.76 E-value=69 Score=28.44 Aligned_cols=80 Identities=10% Similarity=-0.003 Sum_probs=37.8
Q ss_pred CChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH----hHHHHHHHHHHhccCCCCcHHH
Q 048394 177 GNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDI----DGVERVFYEMCNECEDKCRWTT 252 (485)
Q Consensus 177 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 252 (485)
+|.......+.++...|. +.+...+..+... +|...-...+.++.+.|+. +++...+..+.. ..++..+
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~---~D~d~~V 107 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL---EDKSACV 107 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh---cCCCHHH
Confidence 355555556666655554 3344444444432 3444444455555555553 345555554432 2334444
Q ss_pred HHHHHHHHHhc
Q 048394 253 YSNLASIYVKA 263 (485)
Q Consensus 253 ~~~l~~~~~~~ 263 (485)
-...+.++...
T Consensus 108 R~~A~~aLG~~ 118 (280)
T PRK09687 108 RASAINATGHR 118 (280)
T ss_pred HHHHHHHHhcc
Confidence 44444444433
No 392
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.96 E-value=21 Score=30.40 Aligned_cols=100 Identities=10% Similarity=-0.076 Sum_probs=72.9
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhc------ccccCCchhHHH-----------HHHHHHHhcccHHHHHHHHHHHHHHhhh
Q 048394 360 IRAYLQKDMYEEAALIFNNAKKR------ANASARFFKSRE-----------SFMIYYLRSRQLDLALNEMEAALSEAKQ 422 (485)
Q Consensus 360 ~~~~~~~~~~~~A~~~~~~~~~~------~~~~~p~~~~~~-----------~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 422 (485)
.+-+.+.|++.+|..-|.+.+.. .- .|...-|. .+.+.+...|++-++++...+++..
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkE--kP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~--- 259 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKE--KPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH--- 259 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhcc--CCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc---
Confidence 44588899999999999887531 11 45544442 2234456788999999999999887
Q ss_pred cCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHH
Q 048394 423 FHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAY 466 (485)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 466 (485)
.+.+...|..=..+....-+..+|.+-|..+++++|.-..+.
T Consensus 260 --~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 260 --HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred --CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 556677777777777777788999999999999888644443
No 393
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=71.51 E-value=71 Score=28.05 Aligned_cols=199 Identities=10% Similarity=0.026 Sum_probs=113.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhh-------HHHHHHHHHhhCCHHHHHHHHHhhcc------cCCCHhH
Q 048394 80 EYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTD-------FAVYLDLTAKTNGIAAAEKYFNGLSE------YAKNRYT 146 (485)
Q Consensus 80 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~ 146 (485)
..+.+...+.+++++|+.++.++...|+..+..+ ..-+...|...|+...-.+......+ .+....+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 4456667788999999999999988887666543 44567778888887766655544333 1223445
Q ss_pred HHHHHHHHHh-cCcHHHHHHHHHHHHhCCCCCCh-----hhHHHHHHHHHhCCCcccHHHHHHH----HHHcCCCccHHH
Q 048394 147 YGALLNCYCK-ELMTERALALFEKMDELKFLGNT-----VAFNNLSTMYLRLGQPEKVRPLVNQ----MKQRNISLDNLT 216 (485)
Q Consensus 147 ~~~li~~~~~-~~~~~~A~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~----~~~~~~~p~~~~ 216 (485)
..+|+..+.. ...++.-+.+.....+....-.. ..-.-++..+.+.|.+.+|+.+.+. +++..-+|+..+
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 5666666543 34456666665555443211111 1124467788889999888876554 444455566554
Q ss_pred HHHHH-HHHHhcCCHhHHHHHHHHHHh---ccCCCCcHHHHHHHHHHH--HhcccHHHHHHHHHHHHh
Q 048394 217 YIVWM-QSYSHLNDIDGVERVFYEMCN---ECEDKCRWTTYSNLASIY--VKAELFEKAELALKKLEE 278 (485)
Q Consensus 217 ~~~l~-~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~ 278 (485)
...+= ..|-...++.++..-+..... ..-+||....---++++- |...++..|...|-+..+
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 43332 344455555544444433322 123455444433344432 334567777777766655
No 394
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=71.47 E-value=31 Score=23.95 Aligned_cols=15 Identities=20% Similarity=0.248 Sum_probs=6.7
Q ss_pred cCChHHHHHHHHHHH
Q 048394 89 FGRYRHALEVIEWME 103 (485)
Q Consensus 89 ~~~~~~A~~~~~~~~ 103 (485)
.|+.+.|.++++.+.
T Consensus 49 ~g~~~~ar~LL~~L~ 63 (88)
T cd08819 49 HGNESGARELLKRIV 63 (88)
T ss_pred cCcHHHHHHHHHHhc
Confidence 344444444444444
No 395
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=71.45 E-value=46 Score=27.02 Aligned_cols=65 Identities=20% Similarity=0.089 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHhhhcCCCcc---HHHHH-----HHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhC
Q 048394 406 LDLALNEMEAALSEAKQFHWRPM---QVTVD-----TFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAG 477 (485)
Q Consensus 406 ~~~A~~~~~~~~~~~~~~~~~~~---~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 477 (485)
++.|+.+|+.+.+.- .++ ..... ..+-.|.+.|.+++|.+++++..+ +|.+... ..-.....+.+
T Consensus 85 LESAl~v~~~I~~E~-----~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~-r~kL~~II~~K 157 (200)
T cd00280 85 LESALMVLESIEKEF-----SLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKL-RMKLLMIIREK 157 (200)
T ss_pred HHHHHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhH-HHHHHHHHHcc
Confidence 466777777776652 221 22222 234679999999999999999988 4444333 33334444433
No 396
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=71.29 E-value=30 Score=24.46 Aligned_cols=17 Identities=0% Similarity=-0.167 Sum_probs=7.3
Q ss_pred HHhcCChhhHHHHHHHh
Q 048394 294 YCNTSNLDAVNRVWGIL 310 (485)
Q Consensus 294 ~~~~~~~~~a~~~~~~~ 310 (485)
....|++++|...+++.
T Consensus 51 ~~~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEA 67 (94)
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 33444444444444443
No 397
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.04 E-value=1.4e+02 Score=31.30 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHh
Q 048394 147 YGALLNCYCKELMTERALALFEKMDE 172 (485)
Q Consensus 147 ~~~li~~~~~~~~~~~A~~~~~~m~~ 172 (485)
|..|+..|...|+.++|+++|.+...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 55666666666777777777666654
No 398
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=70.92 E-value=45 Score=25.54 Aligned_cols=57 Identities=11% Similarity=-0.020 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHHHHHhhhcCCCc-cHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHH
Q 048394 405 QLDLALNEMEAALSEAKQFHWRP-MQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSA 465 (485)
Q Consensus 405 ~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 465 (485)
+..+.+.+++...+.. .+. .......|.-++.+.++++.+.++.+.+++..|.|..+
T Consensus 50 dv~~GI~iLe~l~~~~----~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSA----HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred HHHHhHHHHHHHhhhc----CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 4455566666665521 111 12222233345666666666666666666666665443
No 399
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.56 E-value=21 Score=29.51 Aligned_cols=34 Identities=12% Similarity=-0.006 Sum_probs=25.0
Q ss_pred cCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 048394 140 YAKNRYTYGALLNCYCKELMTERALALFEKMDEL 173 (485)
Q Consensus 140 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 173 (485)
..|+..+|..++..+...|+.++|.++.+++...
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5677777777777777777777777777777653
No 400
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=70.53 E-value=26 Score=26.47 Aligned_cols=40 Identities=13% Similarity=0.034 Sum_probs=18.5
Q ss_pred HHHHHHHhhhcCCC--ChhhHHHHHHHHHhcCChhHHHHHHH
Q 048394 303 VNRVWGILKSTFPP--TNTSYLVLLQALAKLNAIDILKQCFE 342 (485)
Q Consensus 303 a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~ 342 (485)
..++|..|...++. -...|......+...|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34445555444444 33334444444444555555555443
No 401
>PRK09687 putative lyase; Provisional
Probab=70.52 E-value=78 Score=28.11 Aligned_cols=9 Identities=0% Similarity=-0.005 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 048394 372 AALIFNNAK 380 (485)
Q Consensus 372 A~~~~~~~~ 380 (485)
|...+.++.
T Consensus 253 a~p~L~~l~ 261 (280)
T PRK09687 253 LLPVLDTLL 261 (280)
T ss_pred HHHHHHHHH
Confidence 344444333
No 402
>PHA02875 ankyrin repeat protein; Provisional
Probab=70.46 E-value=62 Score=30.63 Aligned_cols=15 Identities=13% Similarity=0.155 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhccc
Q 048394 370 EEAALIFNNAKKRAN 384 (485)
Q Consensus 370 ~~A~~~~~~~~~~~~ 384 (485)
+++.+-++.|+...+
T Consensus 297 ~~C~~ei~~mk~~~i 311 (413)
T PHA02875 297 EKCIIELRRIKSEKI 311 (413)
T ss_pred HHHHHHHHHHHhhcc
Confidence 345555666666544
No 403
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=69.22 E-value=1.2e+02 Score=32.44 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=21.8
Q ss_pred HHhHHHHHHHHHhcC--cHHHHHHHHHHHHhc
Q 048394 353 MRLADVIIRAYLQKD--MYEEAALIFNNAKKR 382 (485)
Q Consensus 353 ~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~ 382 (485)
......++.+|.+.+ ++++|+.+..++.+.
T Consensus 812 ~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 812 DKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 344456777788777 788888888887765
No 404
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.55 E-value=41 Score=24.13 Aligned_cols=51 Identities=8% Similarity=-0.080 Sum_probs=24.0
Q ss_pred HHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q 048394 327 ALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRA 383 (485)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 383 (485)
.+.+.|++++|..+.+.. ..||...|.+|.. .+.|..+++..-+.++...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 344555555555544433 2445555544433 23444444444444444444
No 405
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.54 E-value=15 Score=24.91 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=18.7
Q ss_pred cCChhHHHHHHHHHHHccCCCC--HHhHHHHHHHHHhcCcHHHHHHH
Q 048394 331 LNAIDILKQCFEEWESRCSSYD--MRLADVIIRAYLQKDMYEEAALI 375 (485)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~ 375 (485)
.++.++|+..|....+.-..+. -.++..++.+|+..|++++++.+
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444322211 12333444445555555544443
No 406
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=68.48 E-value=54 Score=25.52 Aligned_cols=78 Identities=12% Similarity=0.094 Sum_probs=39.1
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhhccc-------CCCHhHHHHHHHHHHhcCc-HHHHHHHHHHHHhCCCCCChhhHHHHH
Q 048394 115 AVYLDLTAKTNGIAAAEKYFNGLSEY-------AKNRYTYGALLNCYCKELM-TERALALFEKMDELKFLGNTVAFNNLS 186 (485)
Q Consensus 115 ~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~~l~ 186 (485)
+.++.-....++......+++.+... ..+...|+.++.+.++..- ---+..+|.-|++.+.++++.-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 33444434444444444444443221 1234456666666644444 233455666666555666666666666
Q ss_pred HHHHhC
Q 048394 187 TMYLRL 192 (485)
Q Consensus 187 ~~~~~~ 192 (485)
.++.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 665544
No 407
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=68.34 E-value=14 Score=31.11 Aligned_cols=58 Identities=16% Similarity=0.038 Sum_probs=40.6
Q ss_pred HhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCH
Q 048394 401 LRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDF 463 (485)
Q Consensus 401 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 463 (485)
.+.++.+.|.+++.+.... .+-....|..+...-.+.|+.+.|.+.|++..+.+|+|.
T Consensus 6 ~~~~D~~aaaely~qal~l-----ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 6 AESGDAEAAAELYNQALEL-----APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred cccCChHHHHHHHHHHhhc-----CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 4566777777777777765 344566777777777777777777777777777776653
No 408
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=68.27 E-value=1e+02 Score=28.60 Aligned_cols=57 Identities=12% Similarity=0.050 Sum_probs=36.9
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH-hcCChhhHHHHHHHhhh
Q 048394 256 LASIYVKAELFEKAELALKKLEEMKPR-DRKAYHFLISLYC-NTSNLDAVNRVWGILKS 312 (485)
Q Consensus 256 l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 312 (485)
.+..+.+.|-+..|.++.+-+...+|. |+.....+|+.|+ +.++++--+++.+....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 445666777777777777777776665 6666666666664 55566656666655443
No 409
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=67.87 E-value=5.5 Score=30.09 Aligned_cols=32 Identities=22% Similarity=0.073 Sum_probs=22.8
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 048394 156 KELMTERALALFEKMDELKFLGNTVAFNNLSTMY 189 (485)
Q Consensus 156 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 189 (485)
..|.-.+|..+|++|++.|-+|| .|+.|+...
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 34566677888888888887776 577776543
No 410
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=67.64 E-value=35 Score=28.15 Aligned_cols=37 Identities=16% Similarity=0.070 Sum_probs=21.6
Q ss_pred CCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Q 048394 245 EDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKP 281 (485)
Q Consensus 245 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 281 (485)
...|+..+|..++.++...|+.++|.+...++....|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3555666666666666666666666666655555444
No 411
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=67.13 E-value=53 Score=24.89 Aligned_cols=77 Identities=6% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhh-HHHHHHHHHhCCCcccHHHHHHHH
Q 048394 127 IAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVA-FNNLSTMYLRLGQPEKVRPLVNQM 205 (485)
Q Consensus 127 ~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~ 205 (485)
++++.+.|........|.......+...-... .+.++|+.|...|+--.... |......+...|++++|.++|+.-
T Consensus 49 Ler~~~~f~~~~~Y~nD~RylkiWi~ya~~~~---~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 49 LERCIRKFKDDERYKNDERYLKIWIKYADLSS---DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS---HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc---CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q ss_pred H
Q 048394 206 K 206 (485)
Q Consensus 206 ~ 206 (485)
+
T Consensus 126 i 126 (126)
T PF08311_consen 126 I 126 (126)
T ss_dssp H
T ss_pred C
No 412
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.77 E-value=1.2e+02 Score=28.95 Aligned_cols=362 Identities=13% Similarity=0.048 Sum_probs=191.2
Q ss_pred HcCChHHHHHHHHHHH--hCCCCCCh-----hhHHHHHHHHHhhC-CHHHHHHHHHhhcccCCCHhHHH-----HHHHHH
Q 048394 88 KFGRYRHALEVIEWME--SRKMHFSY-----TDFAVYLDLTAKTN-GIAAAEKYFNGLSEYAKNRYTYG-----ALLNCY 154 (485)
Q Consensus 88 ~~~~~~~A~~~~~~~~--~~~~~~~~-----~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~-----~li~~~ 154 (485)
-..+++.|..-++..- ...+ |+. .++..+...+.... .+..+..++.+..+...+...|. -|+...
T Consensus 59 yT~N~elAksHLekA~~i~~~i-p~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~ 137 (629)
T KOG2300|consen 59 YTKNVELAKSHLEKAWLISKSI-PSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLH 137 (629)
T ss_pred HhccHHHHHHHHHHHHHHHccc-ccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHH
Confidence 3467777777666542 2222 222 35666777777766 78888888888777333333443 355556
Q ss_pred HhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHH------HhCCC---cccHHHHHHHHHHcCCCccHHH-------H-
Q 048394 155 CKELMTERALALFEKMDELKFLGNTVAFNNLSTMY------LRLGQ---PEKVRPLVNQMKQRNISLDNLT-------Y- 217 (485)
Q Consensus 155 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~------~~~g~---~~~a~~~~~~~~~~~~~p~~~~-------~- 217 (485)
.-..++..|.+++.--.+. -.|-...|.-++... ....+ ...+.....++.+. ..+|... |
T Consensus 138 ~idkD~~sA~elLavga~s-Ad~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl 215 (629)
T KOG2300|consen 138 IIDKDFPSALELLAVGAES-ADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYL 215 (629)
T ss_pred hhhccchhHHHHHhccccc-cchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHH
Confidence 6678888888875432211 011122232222211 12223 34445555555554 4555332 2
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhc--cCC------------CCcHHHHHHHHH-------------HHHhcccHHHHH
Q 048394 218 IVWMQSYSHLNDIDGVERVFYEMCNE--CED------------KCRWTTYSNLAS-------------IYVKAELFEKAE 270 (485)
Q Consensus 218 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~------------~~~~~~~~~l~~-------------~~~~~~~~~~A~ 270 (485)
+.-+.-|...|+...+...++++.+. .+. .|+...+..+.. .-...|-+++|.
T Consensus 216 ~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~ 295 (629)
T KOG2300|consen 216 VLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQ 295 (629)
T ss_pred HHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHH
Confidence 11233455678888888777776541 111 122222211111 111345566666
Q ss_pred HHHHHHHh----cCCC--ChHHH--------HHHHHHHHhcCChhhHHHHHHHhhhcCCC-Ch----hh-----HHHHHH
Q 048394 271 LALKKLEE----MKPR--DRKAY--------HFLISLYCNTSNLDAVNRVWGILKSTFPP-TN----TS-----YLVLLQ 326 (485)
Q Consensus 271 ~~~~~~~~----~~~~--~~~~~--------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~-----~~~l~~ 326 (485)
++-+++.. .... ....+ ..++.+-.-.|++.+|++-...|.+-... .. .. ...+..
T Consensus 296 K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGl 375 (629)
T KOG2300|consen 296 KYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGL 375 (629)
T ss_pred HHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhh
Confidence 65555544 1111 22222 22223334589999999988888764333 11 11 122333
Q ss_pred HHHhcCChhHHHHHHHHHHHccCCCCHHhH--HHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHH--------H
Q 048394 327 ALAKLNAIDILKQCFEEWESRCSSYDMRLA--DVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRES--------F 396 (485)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~--------l 396 (485)
-++..+.++.|+..|....+.-.+.|...+ ..+...|.+.|+.+.-.++++.+- +|+..++.. +
T Consensus 376 ys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~------p~nt~s~ssq~l~a~~~~ 449 (629)
T KOG2300|consen 376 YSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIG------PLNTNSLSSQRLEASILY 449 (629)
T ss_pred HhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcC------CCCCCcchHHHHHHHHHH
Confidence 345678899999999887765433343332 345667888887776666665543 333333211 1
Q ss_pred HHHH--HhcccHHHHHHHHHHHHHHhhhcCC-CccHHHHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 048394 397 MIYY--LRSRQLDLALNEMEAALSEAKQFHW-RPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSL 458 (485)
Q Consensus 397 ~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 458 (485)
+.++ ...+++.+|..++.+-++.....++ +...-....+...+...|+..++.+...-..+.
T Consensus 450 v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamql 514 (629)
T KOG2300|consen 450 VYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQL 514 (629)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHH
Confidence 2222 4689999999999998876411111 111112222335566778888888776655553
No 413
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=66.70 E-value=30 Score=29.18 Aligned_cols=85 Identities=16% Similarity=0.103 Sum_probs=51.5
Q ss_pred HHhcccHHHHHHHHHHHHHHhhhcCCCcc--HHHHHHHHHHHhhcCChhh-------HHHHHHHHhhcC--C----CCHH
Q 048394 400 YLRSRQLDLALNEMEAALSEAKQFHWRPM--QVTVDTFFRFFEEEKDVDG-------AEEFCKVLKSLN--C----LDFS 464 (485)
Q Consensus 400 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~-------A~~~~~~~~~~~--~----~~~~ 464 (485)
|.....+++|++.|.-++-.....+.+|. ...+..+.+.|...|+.+. |...|.+..+.. | ....
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 34455667777766665544322223343 3345556677888887544 444445544432 1 1356
Q ss_pred HHHHHHHHHHHhCCCcchhc
Q 048394 465 AYSLLIKTYIAAGKLASDMR 484 (485)
Q Consensus 465 ~~~~l~~~~~~~g~~~~A~~ 484 (485)
....++....+.|++++|.+
T Consensus 167 l~YLigeL~rrlg~~~eA~~ 186 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKR 186 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHH
Confidence 67789999999999999975
No 414
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=66.16 E-value=58 Score=28.23 Aligned_cols=62 Identities=19% Similarity=0.168 Sum_probs=39.6
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhhhcCC-CccHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 048394 394 ESFMIYYLRSRQLDLALNEMEAALSEAKQFHW-RPMQVTVDTFFRFFEEEKDVDGAEEFCKVL 455 (485)
Q Consensus 394 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 455 (485)
..+..-|.+.|++++|.++|+.+...-...++ .+...+...+..++.+.|+.+....+.-++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34566678888888888888888554322222 234555666667777778877766654433
No 415
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=65.84 E-value=1.1e+02 Score=28.28 Aligned_cols=57 Identities=19% Similarity=0.139 Sum_probs=34.1
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHH-hcccHHHHHHHHHHHHH
Q 048394 360 IRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYL-RSRQLDLALNEMEAALS 418 (485)
Q Consensus 360 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 418 (485)
+..+.+.|-+..|.++.+-+...+. .-|+.....+|+.|+ +.++++--+++++....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp--~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDP--DEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCC--CCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 3445666777777777777766653 335555555566553 56666666666665444
No 416
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=65.80 E-value=17 Score=34.23 Aligned_cols=88 Identities=13% Similarity=-0.023 Sum_probs=47.7
Q ss_pred HHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHH
Q 048394 259 IYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILK 338 (485)
Q Consensus 259 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 338 (485)
.+...++++.|..++.++.+..|.....|..=..++.+.+++..|+.=+..+.+..|.....|..-..++.+.+.+.+|.
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence 34445556666666666666555455555444455556666666655555555555444444444444555555555555
Q ss_pred HHHHHHHH
Q 048394 339 QCFEEWES 346 (485)
Q Consensus 339 ~~~~~~~~ 346 (485)
..|+....
T Consensus 93 ~~l~~~~~ 100 (476)
T KOG0376|consen 93 LDLEKVKK 100 (476)
T ss_pred HHHHHhhh
Confidence 55555544
No 417
>PF13934 ELYS: Nuclear pore complex assembly
Probab=65.67 E-value=86 Score=26.77 Aligned_cols=78 Identities=10% Similarity=0.109 Sum_probs=37.3
Q ss_pred HcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHHHH
Q 048394 88 KFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALF 167 (485)
Q Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 167 (485)
..+++++|++.+-.- .+.|+. -..++.++...|+.+.|..++........+...-..++.. ..++.+.+|+.+-
T Consensus 90 D~~~~~~A~~~L~~p---s~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~ 163 (226)
T PF13934_consen 90 DHGDFEEALELLSHP---SLIPWF--PDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEAFSFQ 163 (226)
T ss_pred ChHhHHHHHHHhCCC---CCCccc--HHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHHHHHH
Confidence 445666666655221 111111 1235555555666666666666655422222223333333 4456666666655
Q ss_pred HHHH
Q 048394 168 EKMD 171 (485)
Q Consensus 168 ~~m~ 171 (485)
+...
T Consensus 164 R~~~ 167 (226)
T PF13934_consen 164 RSYP 167 (226)
T ss_pred HhCc
Confidence 4443
No 418
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=64.73 E-value=78 Score=25.99 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=14.0
Q ss_pred hhcCChhhHHHHHHHHhhc
Q 048394 440 EEEKDVDGAEEFCKVLKSL 458 (485)
Q Consensus 440 ~~~~~~~~A~~~~~~~~~~ 458 (485)
.+.|+++.|++.++-|.+.
T Consensus 132 l~~~~~~~Ae~~~~~ME~l 150 (204)
T COG2178 132 LRKGSFEEAERFLKFMEKL 150 (204)
T ss_pred HHhccHHHHHHHHHHHHHH
Confidence 4568888888887777663
No 419
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=64.65 E-value=21 Score=31.51 Aligned_cols=80 Identities=8% Similarity=-0.058 Sum_probs=54.5
Q ss_pred CchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHH-HHHHHhhcCChhhHHHHHHHHhhcCCCCHHHH
Q 048394 388 RFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDT-FFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAY 466 (485)
Q Consensus 388 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 466 (485)
.|+..|...+..-.+.|.+.+.-.++.+.+.. .|.+...|-. .-.-+...++++.+..+|.+.+..+|.+|..|
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~k-----hP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw 179 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTK-----HPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW 179 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence 34455555554445566777777888888877 4556666644 22345667888888888888888888888887
Q ss_pred HHHHHH
Q 048394 467 SLLIKT 472 (485)
Q Consensus 467 ~~l~~~ 472 (485)
......
T Consensus 180 ~eyfr~ 185 (435)
T COG5191 180 IEYFRM 185 (435)
T ss_pred HHHHHH
Confidence 665543
No 420
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=64.47 E-value=1.1e+02 Score=27.55 Aligned_cols=59 Identities=10% Similarity=0.165 Sum_probs=33.5
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 048394 220 WMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEE 278 (485)
Q Consensus 220 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 278 (485)
+.-+..+.|+..+|.+.|+.+.++.....-......++.++....-+.+...++-+..+
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44444567888888888887776211111122334566666666666666666655555
No 421
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=64.20 E-value=29 Score=20.87 Aligned_cols=34 Identities=9% Similarity=0.116 Sum_probs=23.8
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 048394 86 LRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLD 119 (485)
Q Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 119 (485)
..+.|-..++..+++.|.+.|+..+...|..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 4466677777777777777777777776666554
No 422
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=63.26 E-value=94 Score=28.88 Aligned_cols=54 Identities=13% Similarity=-0.108 Sum_probs=31.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHh------cCcHHHHHHHHHH
Q 048394 325 LQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQ------KDMYEEAALIFNN 378 (485)
Q Consensus 325 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~A~~~~~~ 378 (485)
+..+.+.+++..|.++|.++.+..+.+....+-..+..+++ .-++++|.+.++.
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 33455677777777777777776555554443333333332 3456666666654
No 423
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=62.15 E-value=72 Score=24.93 Aligned_cols=63 Identities=8% Similarity=0.026 Sum_probs=40.3
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 048394 166 LFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLND 229 (485)
Q Consensus 166 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 229 (485)
+.+.+.+.|++++. .-..++..+...++.-.|.++++++.+.+...+..|....++.+...|-
T Consensus 8 ~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 44455667766544 3455667777777778888888888877655555555555566655553
No 424
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=62.12 E-value=2e+02 Score=29.70 Aligned_cols=97 Identities=8% Similarity=0.048 Sum_probs=51.5
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHH---hcccHHHHHHHHHHHHhcCCCChHHHHH
Q 048394 213 DNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYV---KAELFEKAELALKKLEEMKPRDRKAYHF 289 (485)
Q Consensus 213 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 289 (485)
+...+..||..+.+.|++++....-..|.. -.+.++..|...+.-.. ..++...+...|++... .-.++..|.-
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~--~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~-dy~~v~iw~e 188 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSE--IAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG-DYNSVPIWEE 188 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHH--hcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc-ccccchHHHH
Confidence 334455667777777777777666666666 45555555544443322 23556666666666553 2223344444
Q ss_pred HHHHHHh-------cCChhhHHHHHHHhhh
Q 048394 290 LISLYCN-------TSNLDAVNRVWGILKS 312 (485)
Q Consensus 290 l~~~~~~-------~~~~~~a~~~~~~~~~ 312 (485)
.+..... .++++....+|.+...
T Consensus 189 ~~~y~~~~~~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 189 VVNYLVGFGNVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred HHHHHHhccccccccccchhhhHHHHHHHh
Confidence 4443332 2344555556655543
No 425
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=61.81 E-value=1.9e+02 Score=29.46 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 048394 76 KDMLEYCVRSLRKFGRYRHALEVIEWMES 104 (485)
Q Consensus 76 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 104 (485)
+++...++-.|....+++..+++.+.+++
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~ 229 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKR 229 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHh
Confidence 34444444455555555555555555543
No 426
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=60.79 E-value=1.1e+02 Score=26.35 Aligned_cols=51 Identities=25% Similarity=0.173 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhhhcCCCccHHHHHHHH-----HHHhhcCChhhHHHHHHHHhh
Q 048394 406 LDLALNEMEAALSEAKQFHWRPMQVTVDTFF-----RFFEEEKDVDGAEEFCKVLKS 457 (485)
Q Consensus 406 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~A~~~~~~~~~ 457 (485)
.+.|.+.|+++....... .+|...++..++ -.|...|+.++|.++.+.+.+
T Consensus 142 ~~~a~~aY~~A~~~a~~~-L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKE-LPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcc-cCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 466777777766654433 556655554443 234557888888877766655
No 427
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.73 E-value=2e+02 Score=29.39 Aligned_cols=102 Identities=9% Similarity=-0.025 Sum_probs=62.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCc
Q 048394 83 VRSLRKFGRYRHALEVIEWMESRKMHF---SYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELM 159 (485)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 159 (485)
++.+.+.+.+++|++.-+... |..| -......+|..+.-.|++++|-...-.|.. .+..-|...+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g--n~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG--NNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc--chHHHHHHHHHHhccccc
Confidence 677788888888888776543 2233 234566677777788888888777776665 355566666666666665
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 048394 160 TERALALFEKMDELKFLGNTVAFNNLSTMYLR 191 (485)
Q Consensus 160 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 191 (485)
......+ +.......+...|..++-.+..
T Consensus 439 l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 5443332 2322222344566666666654
No 428
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=60.53 E-value=2.4e+02 Score=30.25 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=16.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHH
Q 048394 79 LEYCVRSLRKFGRYRHALEVIEW 101 (485)
Q Consensus 79 ~~~l~~~~~~~~~~~~A~~~~~~ 101 (485)
....++.+...++|.+|+.+.+.
T Consensus 697 VL~~ir~~Ld~~~Y~~Af~~~Rk 719 (928)
T PF04762_consen 697 VLAGIRKLLDAKDYKEAFELCRK 719 (928)
T ss_pred HHHHHHHHHhhccHHHHHHHHHH
Confidence 34456677788899888777654
No 429
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=60.24 E-value=25 Score=33.12 Aligned_cols=104 Identities=11% Similarity=-0.068 Sum_probs=51.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCch-hHHHHHHHHHHhc
Q 048394 325 LQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFF-KSRESFMIYYLRS 403 (485)
Q Consensus 325 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~ 403 (485)
++.+.+.++++.|..++.++.+.... .+..|..=..++.+.+++..|..=+.++++.. |.. ..|..=..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie~d----P~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIELD----PTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCc-ceeeechhhhhheeechhhhHHHHHHhhhhcC----chhhheeeeccHHHHhH
Confidence 34445556666666666666665322 23333333355666666666666666655542 211 1122222334444
Q ss_pred ccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH
Q 048394 404 RQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFF 439 (485)
Q Consensus 404 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 439 (485)
+++.+|...|+..... .|+..-....+.-|
T Consensus 86 ~~~~~A~~~l~~~~~l------~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKL------APNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHHhhhc------CcCcHHHHHHHHHH
Confidence 5555555555555443 35555555554444
No 430
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.14 E-value=52 Score=33.76 Aligned_cols=132 Identities=18% Similarity=0.187 Sum_probs=85.5
Q ss_pred HHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCccc
Q 048394 118 LDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEK 197 (485)
Q Consensus 118 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 197 (485)
...+..+|+++.|++.-.++- +..+|..|.....++|+.+-|+..|++.+. |+.|--.|.-.|+.++
T Consensus 650 F~LaLe~gnle~ale~akkld----d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eK 716 (1202)
T KOG0292|consen 650 FELALECGNLEVALEAAKKLD----DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEK 716 (1202)
T ss_pred eeeehhcCCHHHHHHHHHhcC----cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHH
Confidence 344567888888888877764 678899999999999999999988887664 3444445666788777
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 048394 198 VRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLE 277 (485)
Q Consensus 198 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 277 (485)
..++......++ |.. .......-.|+.++-.++++.... .+.... .....|.-++|.++.++..
T Consensus 717 L~Km~~iae~r~---D~~---~~~qnalYl~dv~ervkIl~n~g~---~~layl-------ta~~~G~~~~ae~l~ee~~ 780 (1202)
T KOG0292|consen 717 LSKMMKIAEIRN---DAT---GQFQNALYLGDVKERVKILENGGQ---LPLAYL-------TAAAHGLEDQAEKLGEELE 780 (1202)
T ss_pred HHHHHHHHHhhh---hhH---HHHHHHHHhccHHHHHHHHHhcCc---ccHHHH-------HHhhcCcHHHHHHHHHhhc
Confidence 766665554332 221 122222345788877777765433 111111 1123577788888888876
Q ss_pred h
Q 048394 278 E 278 (485)
Q Consensus 278 ~ 278 (485)
.
T Consensus 781 ~ 781 (1202)
T KOG0292|consen 781 K 781 (1202)
T ss_pred c
Confidence 6
No 431
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=59.93 E-value=1e+02 Score=25.63 Aligned_cols=29 Identities=14% Similarity=-0.083 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 048394 319 TSYLVLLQALAKLNAIDILKQCFEEWESR 347 (485)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 347 (485)
...+.++..+.-.|+++.|.+.|.-+.+.
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 44566777777778888888888777765
No 432
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=59.89 E-value=57 Score=26.30 Aligned_cols=65 Identities=9% Similarity=0.013 Sum_probs=41.3
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHH
Q 048394 63 ALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIA 128 (485)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 128 (485)
+.+.+...|.+.++.-. .++..+......-.|.++++.+.+.+..++..|--..+..+.+.|-+.
T Consensus 13 ~~~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 13 AEKLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 34445566777776655 444555555667788888888888776666655444566666666443
No 433
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=59.62 E-value=1.6e+02 Score=27.78 Aligned_cols=63 Identities=14% Similarity=0.164 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhccC------CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 048394 216 TYIVWMQSYSHLNDIDGVERVFYEMCNECE------DKCRWTTYSNLASIYVKAELFEKAELALKKLEE 278 (485)
Q Consensus 216 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 278 (485)
+...|++.++-.||+..|+++++.+.-..+ ..-...+|--++-+|.-.+++.+|.+.|....-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577788888999999988876643111 222345566788888899999999999888654
No 434
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=58.39 E-value=42 Score=20.77 Aligned_cols=25 Identities=16% Similarity=0.046 Sum_probs=15.7
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHHh
Q 048394 396 FMIYYLRSRQLDLALNEMEAALSEA 420 (485)
Q Consensus 396 l~~~~~~~g~~~~A~~~~~~~~~~~ 420 (485)
+.-++.+.|++++|.+..+.+++..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 3445667777777777777777653
No 435
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=58.33 E-value=2.1e+02 Score=28.73 Aligned_cols=64 Identities=14% Similarity=0.094 Sum_probs=35.8
Q ss_pred ChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC
Q 048394 110 SYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFL 176 (485)
Q Consensus 110 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 176 (485)
....+..++..+. .=+.+.-.++++++.. .+ ...+..++++....|-.....-+.+.+....+.
T Consensus 309 ~~~~f~~lv~~lR-~~~~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~ 372 (574)
T smart00638 309 AAAKFLRLVRLLR-TLSEEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKIT 372 (574)
T ss_pred hHHHHHHHHHHHH-hCCHHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 3444555555543 3345555566665543 22 456667777777777766666666555554443
No 436
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=58.33 E-value=1.3e+02 Score=26.53 Aligned_cols=26 Identities=12% Similarity=0.015 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHH
Q 048394 215 LTYIVWMQSYSHLNDIDGVERVFYEM 240 (485)
Q Consensus 215 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 240 (485)
..+..+..-|++.++.+.+.++..+.
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~ 141 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRL 141 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 33444445555555555555544433
No 437
>PRK14135 recX recombination regulator RecX; Provisional
Probab=58.31 E-value=1.3e+02 Score=26.39 Aligned_cols=91 Identities=13% Similarity=0.081 Sum_probs=55.2
Q ss_pred CchhHHHHHHhhcCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 048394 42 NEDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLT 121 (485)
Q Consensus 42 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (485)
+...+...|.+-+.++..+..+++.+...|...|.......+....+.+. ..-.++-..+.+.|+.++ .....+.-+
T Consensus 73 s~~el~~kL~~kg~~~~~Ie~vl~~l~~~~~ldD~~~a~~~~~~~~~~~~-~g~~~I~~kL~~kGi~~~--~Ie~~l~~l 149 (263)
T PRK14135 73 TEKEVRDYLKKHEISEEIISEVIDKLKEEKYIDDKEYAESYVRTNINTGD-KGPRVIKQKLLQKGIEDE--IIEEALSEY 149 (263)
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHcCCCHH--HHHHHHHhC
Confidence 34667777877777788888888888888886665555556666555432 344566777778886433 333444443
Q ss_pred HhhCCHHHHHHHHH
Q 048394 122 AKTNGIAAAEKYFN 135 (485)
Q Consensus 122 ~~~g~~~~a~~~~~ 135 (485)
...+..+.|..+..
T Consensus 150 ~~~~~~d~a~~~~~ 163 (263)
T PRK14135 150 TEEDQIEVAQKLAE 163 (263)
T ss_pred ChhhHHHHHHHHHH
Confidence 33344444444433
No 438
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.25 E-value=1.9e+02 Score=28.38 Aligned_cols=95 Identities=19% Similarity=0.135 Sum_probs=54.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHH-hcCcHHHHHHHHHHHHhccc-ccCCchhHHHHHHHHHHh
Q 048394 325 LQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYL-QKDMYEEAALIFNNAKKRAN-ASARFFKSRESFMIYYLR 402 (485)
Q Consensus 325 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~-~~~p~~~~~~~l~~~~~~ 402 (485)
+..+.+.|-+..|.+..+.+.+..+.-|+.....+|+.|+ ++.+++=.+++++.....+. ...|+-.--..+...|..
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 4445667788888888887777766556666666777665 55667767777766643321 114443222333344443
Q ss_pred ccc---HHHHHHHHHHHHHH
Q 048394 403 SRQ---LDLALNEMEAALSE 419 (485)
Q Consensus 403 ~g~---~~~A~~~~~~~~~~ 419 (485)
... -..|...+.++...
T Consensus 429 ~~~~~~rqsa~~~l~qAl~~ 448 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQALKH 448 (665)
T ss_pred cCChhhHHHHHHHHHHHHHh
Confidence 333 34555555555554
No 439
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=57.80 E-value=72 Score=23.28 Aligned_cols=30 Identities=13% Similarity=-0.135 Sum_probs=12.9
Q ss_pred ccHHHHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 048394 427 PMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSL 458 (485)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 458 (485)
||...|..| +-.+.|-.+.+...+.++...
T Consensus 69 pdL~p~~AL--~a~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 69 PDLEPWAAL--CAWKLGLASALESRLTRLASS 98 (116)
T ss_dssp GGGHHHHHH--HHHHCT-HHHHHHHHHHHCT-
T ss_pred ccHHHHHHH--HHHhhccHHHHHHHHHHHHhC
Confidence 444444444 223445555555555544443
No 440
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=56.96 E-value=1e+02 Score=24.92 Aligned_cols=125 Identities=11% Similarity=0.104 Sum_probs=75.7
Q ss_pred chhHHHHHHhhcCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 048394 43 EDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTA 122 (485)
Q Consensus 43 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (485)
...|...|.+-+....-++.+++.+.+.|...|...-...+..-.+.| ..-..+...+.+.|+ +..+-...+..+.
T Consensus 37 e~ELr~kL~k~~~~~~~Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkGi--~~~~Ie~aL~~~~ 112 (174)
T COG2137 37 EKELRRKLAKKEFSEEIIEEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKGI--DDEIIEEALELID 112 (174)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcCC--CHHHHHHHHhccc
Confidence 445667777777777778888888888888777777777777777666 445567777778884 4545555555455
Q ss_pred hhCCHHHHHHHHHhhcc---cCCCHhHHHHHHHHHHhcC-cHHHHHHHHHHHH
Q 048394 123 KTNGIAAAEKYFNGLSE---YAKNRYTYGALLNCYCKEL-MTERALALFEKMD 171 (485)
Q Consensus 123 ~~g~~~~a~~~~~~~~~---~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~ 171 (485)
.....+.|..++..-.. .+++..-...+...+.+.| .++.+..++..+.
T Consensus 113 ~~~~~~~a~~~~~kk~~~~~~~~~~~~k~Ki~r~L~~rGFs~~~i~~~l~~~~ 165 (174)
T COG2137 113 EEDEQERARKVLRKKFKRENKPPDKKEKAKIQRFLLRRGFSYEVIKEALNEAE 165 (174)
T ss_pred hHHHHHHHHHHHHHHhCccccCcchhHHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 55555566655554333 2344344444444444444 3444444444443
No 441
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=56.81 E-value=1.2e+02 Score=25.61 Aligned_cols=55 Identities=15% Similarity=-0.045 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHhhhcCCCccHHHHHHH-HHHHhhcCChhhHHHHHHHHhhcCC
Q 048394 406 LDLALNEMEAALSEAKQFHWRPMQVTVDTF-FRFFEEEKDVDGAEEFCKVLKSLNC 460 (485)
Q Consensus 406 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~ 460 (485)
...|++.|.+.......+...-+..+..-| .....+.|+.++|.++|.++.....
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 455666777766654222222233444443 4667888999999999999988653
No 442
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=56.66 E-value=98 Score=24.49 Aligned_cols=65 Identities=17% Similarity=0.200 Sum_probs=38.8
Q ss_pred CchhHHHHHHhhcCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 048394 42 NEDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMH 108 (485)
Q Consensus 42 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 108 (485)
+...+...|.+.+.++..+..+++.+...|...|.......+..... ....-..+-..+.+.|+.
T Consensus 27 s~~el~~kL~~kg~~~~~i~~vl~~l~~~~~ldD~~~a~~~~~~~~~--~~~g~~~I~~~L~~kGi~ 91 (157)
T PRK00117 27 SRAELRRKLAAKGFSEEVIEAVLDRLKEEGLLDDERFAESFVRSRAR--KGYGPRRIRQELRQKGVD 91 (157)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--CCchHHHHHHHHHHcCCC
Confidence 34556666766666677777777777777776665444444554422 222345566666777753
No 443
>PRK13342 recombination factor protein RarA; Reviewed
Probab=56.54 E-value=1.8e+02 Score=27.60 Aligned_cols=32 Identities=16% Similarity=-0.097 Sum_probs=19.8
Q ss_pred cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 048394 157 ELMTERALALFEKMDELKFLGNTVAFNNLSTM 188 (485)
Q Consensus 157 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 188 (485)
.++.+.|+.++.+|.+.|..|....-..++.+
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 46777777777777777766554443333333
No 444
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=56.02 E-value=96 Score=24.20 Aligned_cols=82 Identities=12% Similarity=0.105 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhCCC-----CCChhhHHHHHHHHHhCCC-cccHHHHHHHHHHcCCCccHHHHHH
Q 048394 146 TYGALLNCYCKELMTERALALFEKMDELKF-----LGNTVAFNNLSTMYLRLGQ-PEKVRPLVNQMKQRNISLDNLTYIV 219 (485)
Q Consensus 146 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-----~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~ 219 (485)
..|.++.-....+++...+.+++.+..... ..+...|++++.+..+..- --.+..+|.-|++.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 456777776777888888887777743210 1245577888887765554 3445677777777777888888888
Q ss_pred HHHHHHhc
Q 048394 220 WMQSYSHL 227 (485)
Q Consensus 220 l~~~~~~~ 227 (485)
++.++.+-
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 88876654
No 445
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.02 E-value=3e+02 Score=29.87 Aligned_cols=129 Identities=9% Similarity=0.009 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhhcCCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHH
Q 048394 286 AYHFLISLYCNTSNLDAVNRVWGILKSTFPP----TNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIR 361 (485)
Q Consensus 286 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 361 (485)
-|...++.+-..+..+.+.++-..+.+.-++ -..+++.+.+.....|.+-+|...+-..... .--......++.
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlvi 1062 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLVI 1062 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHHH
Confidence 3556666777777777777766665554444 2344566666666667766665443321110 001223444555
Q ss_pred HHHhcCcHH------------HHHH-HHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHH-HHHHHH
Q 048394 362 AYLQKDMYE------------EAAL-IFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNE-MEAALS 418 (485)
Q Consensus 362 ~~~~~~~~~------------~A~~-~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~ 418 (485)
.++.+|.++ +... +++..-+... ......|+.|-..+...+++.+|-.+ |+....
T Consensus 1063 vLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~--~mk~nyYelLYAfh~~RhN~RkaatvMYEyamr 1131 (1480)
T KOG4521|consen 1063 VLFECGELEALATFPFIGLEQEVEDFLRESAARSSP--SMKKNYYELLYAFHVARHNFRKAATVMYEYAMR 1131 (1480)
T ss_pred HHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCc--cccccHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 566666543 3333 2222222221 12223455555555666676665543 343433
No 446
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=55.59 E-value=81 Score=24.63 Aligned_cols=31 Identities=16% Similarity=0.209 Sum_probs=15.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHccCCCC
Q 048394 322 LVLLQALAKLNAIDILKQCFEEWESRCSSYD 352 (485)
Q Consensus 322 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 352 (485)
..++..+...++.-.|.++++.+.+.++..+
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~is 54 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGIS 54 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCC
Confidence 3444444444444555555555555444433
No 447
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=55.04 E-value=45 Score=20.07 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=11.2
Q ss_pred CCCcccHHHHHHHHHHcCCCccHHHHH
Q 048394 192 LGQPEKVRPLVNQMKQRNISLDNLTYI 218 (485)
Q Consensus 192 ~g~~~~a~~~~~~~~~~~~~p~~~~~~ 218 (485)
.|-.+++..++++|.+.|+.-+...+.
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~ 41 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIE 41 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHH
Confidence 333344444444444444433333333
No 448
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=54.93 E-value=1.2e+02 Score=24.98 Aligned_cols=59 Identities=25% Similarity=0.233 Sum_probs=26.9
Q ss_pred HHHHhcccHHHHHHHHHHHHhcCC---CChHHHHHHHH-HHHhcC--ChhhHHHHHHHhhhcCCC
Q 048394 258 SIYVKAELFEKAELALKKLEEMKP---RDRKAYHFLIS-LYCNTS--NLDAVNRVWGILKSTFPP 316 (485)
Q Consensus 258 ~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~-~~~~~~--~~~~a~~~~~~~~~~~~~ 316 (485)
-.....|++++|..-++++.+... .-...|..+.. +++..+ .+-+|..++.-+.....+
T Consensus 37 I~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~p 101 (204)
T COG2178 37 IFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLP 101 (204)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCC
Confidence 334455666666666655544100 01222333333 333333 334555566655555444
No 449
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=54.71 E-value=88 Score=27.84 Aligned_cols=68 Identities=13% Similarity=0.176 Sum_probs=40.2
Q ss_pred HHHHhhcc--cCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----------CCCcccHH
Q 048394 132 KYFNGLSE--YAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLR----------LGQPEKVR 199 (485)
Q Consensus 132 ~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----------~g~~~~a~ 199 (485)
++++.+.+ +.|.-..+.-+.-.+.+.=.+.+.+.+++.+.. |..-|..|+..|+. .|++.-..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~nm 338 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVNM 338 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 34444433 566666666666666677777777777777765 33335555555543 46666666
Q ss_pred HHHHH
Q 048394 200 PLVNQ 204 (485)
Q Consensus 200 ~~~~~ 204 (485)
++++.
T Consensus 339 kLLQ~ 343 (370)
T KOG4567|consen 339 KLLQN 343 (370)
T ss_pred HHHhc
Confidence 65543
No 450
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.64 E-value=2.6e+02 Score=28.71 Aligned_cols=102 Identities=14% Similarity=0.082 Sum_probs=69.2
Q ss_pred HHHHHhhCCHHHHHHHHHhhcccCC---CHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCC
Q 048394 118 LDLTAKTNGIAAAEKYFNGLSEYAK---NRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQ 194 (485)
Q Consensus 118 ~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 194 (485)
++-+.+.+.+++|+...+......| -...+...|..+.-.|++++|-...-.|... +..-|..-+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 4556678899999998888777444 3457888889999999999999998888874 45577777777777776
Q ss_pred cccHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 048394 195 PEKVRPLVNQMKQRNISLDNLTYIVWMQSYSH 226 (485)
Q Consensus 195 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 226 (485)
......++ ....-..+...|..++..+..
T Consensus 439 l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 54433221 111112345566666666555
No 451
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=54.60 E-value=58 Score=28.23 Aligned_cols=57 Identities=19% Similarity=0.273 Sum_probs=33.0
Q ss_pred HHHHHHHhCCCcccHHHHHHHHHH----cC-CCccHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 048394 184 NLSTMYLRLGQPEKVRPLVNQMKQ----RN-ISLDNLTYIVWMQSYSHLNDIDGVERVFYEM 240 (485)
Q Consensus 184 ~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 240 (485)
.+...|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+..+.+.-++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455566666777777766666632 12 1334445555666666777776666554443
No 452
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=54.54 E-value=50 Score=21.50 Aligned_cols=53 Identities=6% Similarity=-0.018 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCC
Q 048394 73 TVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNG 126 (485)
Q Consensus 73 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 126 (485)
.|....++.++...++..-.++++..+.+..+.|. .+..+|..-++.+++..-
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaReQF 57 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAREQF 57 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHH
Confidence 35556667777777777777788888888777774 566777666666665443
No 453
>PRK09462 fur ferric uptake regulator; Provisional
Probab=54.11 E-value=67 Score=25.14 Aligned_cols=63 Identities=11% Similarity=0.019 Sum_probs=37.0
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCH
Q 048394 64 LNAYIMEGKTVRKDMLEYCVRSLRKF-GRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGI 127 (485)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 127 (485)
.+.+.+.|.+++..-... +..+... +..-.|.++++.+.+.+...+..|.-..+..+.+.|-+
T Consensus 5 ~~~l~~~glr~T~qR~~I-l~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 5 NTALKKAGLKVTLPRLKI-LEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHHcCCCCCHHHHHH-HHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 344556677666554433 3334443 45677888888887777555555544456666665543
No 454
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=53.82 E-value=26 Score=30.96 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=26.7
Q ss_pred CCHh-HHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC
Q 048394 142 KNRY-TYGALLNCYCKELMTERALALFEKMDELKFL 176 (485)
Q Consensus 142 ~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 176 (485)
||.. -|+..|....+.||+++|+.++++..+.|+.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4443 4678888888888888888888888888765
No 455
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=53.04 E-value=1.8e+02 Score=26.34 Aligned_cols=25 Identities=8% Similarity=0.181 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHH
Q 048394 216 TYIVWMQSYSHLNDIDGVERVFYEM 240 (485)
Q Consensus 216 ~~~~l~~~~~~~~~~~~a~~~~~~~ 240 (485)
.+.....-|++.||.+.|.+.+...
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3344455566666666666666544
No 456
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=52.60 E-value=77 Score=22.09 Aligned_cols=64 Identities=9% Similarity=-0.008 Sum_probs=33.0
Q ss_pred HHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHH
Q 048394 338 KQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLA 409 (485)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 409 (485)
.+++....+.|+- +......+-.+-...|+.+.|.+++..+. +|. ..|..++.++...|.-+-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~------~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKE------GWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC------cHHHHHHHHHHHcCchhhh
Confidence 4455555555533 22222222222224566777777777766 542 3455666666666654443
No 457
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.43 E-value=8.9 Score=34.24 Aligned_cols=90 Identities=14% Similarity=0.042 Sum_probs=68.7
Q ss_pred HhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHH
Q 048394 225 SHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVN 304 (485)
Q Consensus 225 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 304 (485)
...|.++.|++.|...+. ..++....|..-.+.+.+.+.+..|+.-+.....+.+.....|-.--.+..-.|+|++|.
T Consensus 125 ln~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 356778888888888877 677777777777788888888888888888877777766666665556666778888888
Q ss_pred HHHHHhhhcCCC
Q 048394 305 RVWGILKSTFPP 316 (485)
Q Consensus 305 ~~~~~~~~~~~~ 316 (485)
..+....+.+..
T Consensus 203 ~dl~~a~kld~d 214 (377)
T KOG1308|consen 203 HDLALACKLDYD 214 (377)
T ss_pred HHHHHHHhcccc
Confidence 888887776655
No 458
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=52.36 E-value=18 Score=27.44 Aligned_cols=33 Identities=24% Similarity=0.230 Sum_probs=24.0
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 048394 86 LRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDL 120 (485)
Q Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 120 (485)
+...|.-.+|..+|..|.+.|-+||. |+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34556777888999999999877765 5666554
No 459
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=52.08 E-value=40 Score=29.83 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=9.5
Q ss_pred hcCcHHHHHHHHHHHHhc
Q 048394 365 QKDMYEEAALIFNNAKKR 382 (485)
Q Consensus 365 ~~~~~~~A~~~~~~~~~~ 382 (485)
+.|+.++|..+|+.....
T Consensus 128 ~~Gk~ekA~~lfeHAlal 145 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALAL 145 (472)
T ss_pred hccchHHHHHHHHHHHhc
Confidence 445555555555555443
No 460
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=51.99 E-value=1.7e+02 Score=25.72 Aligned_cols=24 Identities=13% Similarity=-0.086 Sum_probs=10.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHH
Q 048394 317 TNTSYLVLLQALAKLNAIDILKQC 340 (485)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~a~~~ 340 (485)
++.....+...|.+.|++.+|+..
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~H 112 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERH 112 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHH
Confidence 444444555555555555444433
No 461
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=51.83 E-value=49 Score=29.71 Aligned_cols=96 Identities=17% Similarity=0.096 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCc--hhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccH-HHH
Q 048394 356 ADVIIRAYLQKDMYEEAALIFNNAKKRANASARF--FKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQ-VTV 432 (485)
Q Consensus 356 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~ 432 (485)
|.-=..-|.+..++..|...|.+-++..+. .|+ .+.|+.=..+-...|++..|+.=....+.. .|+. ..|
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~-D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------~P~h~Ka~ 156 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCA-DPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------KPTHLKAY 156 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCC-CccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc------Ccchhhhh
Confidence 333445577777888888888777666531 232 233444444455667777777777766664 2432 233
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHhhc
Q 048394 433 DTFFRFFEEEKDVDGAEEFCKVLKSL 458 (485)
Q Consensus 433 ~~l~~~~~~~~~~~~A~~~~~~~~~~ 458 (485)
-.=..++.....+.+|..+.+...+.
T Consensus 157 ~R~Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 157 IRGAKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 33334555666667777666666543
No 462
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=51.19 E-value=26 Score=30.91 Aligned_cols=42 Identities=19% Similarity=0.303 Sum_probs=29.5
Q ss_pred CChhh-HHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHH
Q 048394 177 GNTVA-FNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYI 218 (485)
Q Consensus 177 p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 218 (485)
||..+ |+..|....+.||+++|++++++.++.|+.--..+|-
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 44444 5678888888888888888888888887654444443
No 463
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=51.12 E-value=2.2e+02 Score=26.88 Aligned_cols=220 Identities=10% Similarity=0.047 Sum_probs=106.5
Q ss_pred CCchhHHHHHHhhcC---CCCcHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHh--CCCCCChhhH
Q 048394 41 GNEDKLYKRLSALGA---TGGSVTGALNAYIMEGKTVRK-DMLEYCVRSLRKFGRYRHALEVIEWMES--RKMHFSYTDF 114 (485)
Q Consensus 41 ~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~ 114 (485)
..|......++..+. ..|.-...|.....-..+||. ..+..+...=-+..--++..++.+.|.. ..-.|-....
T Consensus 16 dnwe~d~~~~~~~~gdl~t~G~~~~~W~~~L~V~~K~d~l~~wd~iydLp~Q~~lr~DC~~~~d~l~n~ee~~v~vv~dl 95 (669)
T KOG3636|consen 16 DNWETDVNVLSSELGDLDTEGNDKSDWMRLLGVSMKPNPLDDWDQIYDLPNQCALRNDCRKLADGLKNKEEDKVPVVSDL 95 (669)
T ss_pred ccHHHHHHHHHhhcCchhccCCCHHHHHHHhcccCCCCchhhHHHHhCCchhhHHHHHHHHHHhhcCCchhhccchhHhh
Confidence 556666665555443 234444455555444444443 3333333322223334455666666622 1112333445
Q ss_pred HHHHHHHHhhCCHHHH-----HHHHHhhcc-cCCCHhHHHHHH---HHHH-----hcCcHHHHHHHHHH---------HH
Q 048394 115 AVYLDLTAKTNGIAAA-----EKYFNGLSE-YAKNRYTYGALL---NCYC-----KELMTERALALFEK---------MD 171 (485)
Q Consensus 115 ~~l~~~~~~~g~~~~a-----~~~~~~~~~-~~~~~~~~~~li---~~~~-----~~~~~~~A~~~~~~---------m~ 171 (485)
.++|..||+.++++-. +.++.-+.. .-|....||..- .-|. ..|++-...+++-+ +-
T Consensus 96 ES~iTfYCK~Rn~~Y~~d~gWi~lL~pl~~L~lprsd~fN~F~ai~~kYIPkdcrpkg~~Fh~FRLLlqYHdPelc~~Ld 175 (669)
T KOG3636|consen 96 ESFITFYCKKRNMDYIKDIGWITLLEPLLLLNLPRSDEFNVFFAITTKYIPKDCRPKGQIFHLFRLLLQYHDPELCNHLD 175 (669)
T ss_pred hhHhhhhhhccCCcccccccHHHHHHHHHHhcCCcchhhhhhHhhhhcccCCCCCCCCccchHHHHHHHhcCHHHhhhhh
Confidence 6677888877654421 222332222 234444444332 2222 12333222222211 12
Q ss_pred hCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHH---H-----HHhcCCHhHHHHHHHHHHhc
Q 048394 172 ELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQ---S-----YSHLNDIDGVERVFYEMCNE 243 (485)
Q Consensus 172 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~---~-----~~~~~~~~~a~~~~~~~~~~ 243 (485)
...+.||..+.|-+...++..-..+-...+|+-..+.+ .|--+.+..+|- + -.+...-++++++++.|..
T Consensus 176 tkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~- 253 (669)
T KOG3636|consen 176 TKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPA- 253 (669)
T ss_pred ccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCch-
Confidence 23467777777777777766666677777777776664 233333333221 1 1223445677777777766
Q ss_pred cCCCCcHHHHHHHHHHHHh
Q 048394 244 CEDKCRWTTYSNLASIYVK 262 (485)
Q Consensus 244 ~~~~~~~~~~~~l~~~~~~ 262 (485)
.-...|+.-+..|...|+.
T Consensus 254 ~L~~eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 254 QLSVEDVPDFFSLAQYYSD 272 (669)
T ss_pred hcccccchhHHHHHHHHhh
Confidence 3334455555556666653
No 464
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=51.07 E-value=2.1e+02 Score=27.15 Aligned_cols=33 Identities=18% Similarity=0.041 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCH
Q 048394 431 TVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDF 463 (485)
Q Consensus 431 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 463 (485)
++..-+..+.|.+++..|..+.+++++++|+..
T Consensus 302 aLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 302 ALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 345556777888888888888888888877644
No 465
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=50.85 E-value=1.4e+02 Score=29.75 Aligned_cols=89 Identities=12% Similarity=0.047 Sum_probs=57.9
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChh------hHHHHHHHhhhcCCC-ChhhHHHH
Q 048394 255 NLASIYVKAELFEKAELALKKLEEMKP---RDRKAYHFLISLYCNTSNLD------AVNRVWGILKSTFPP-TNTSYLVL 324 (485)
Q Consensus 255 ~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~-~~~~~~~l 324 (485)
+|..+|...|++..+.++++.+...+. .-...+|..++...+.|.++ .|.+.+++. ... |..+|..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 588999999999999999999887333 33567888888888888764 233333332 344 77788777
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 048394 325 LQALAKLNAIDILKQCFEEWES 346 (485)
Q Consensus 325 ~~~~~~~~~~~~a~~~~~~~~~ 346 (485)
+.+-...-+.....-++.+...
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7765543333333344444433
No 466
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=50.53 E-value=3.1e+02 Score=28.41 Aligned_cols=97 Identities=11% Similarity=0.078 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH---HHhhCCHHHHHHHHHhhcccCCCHhHHHHHH
Q 048394 75 RKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDL---TAKTNGIAAAEKYFNGLSEYAKNRYTYGALL 151 (485)
Q Consensus 75 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li 151 (485)
+...+..++..+.+.|++++....-..|...- +.+...|...+.- ....+...++..+|++.....-++..|.-.+
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v~iw~e~~ 190 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSVPIWEEVV 190 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccchHHHHHH
Confidence 44556777888888998888777666666553 3455555444432 2345778888888888877444555555555
Q ss_pred HHHHh-------cCcHHHHHHHHHHHHh
Q 048394 152 NCYCK-------ELMTERALALFEKMDE 172 (485)
Q Consensus 152 ~~~~~-------~~~~~~A~~~~~~m~~ 172 (485)
..+.. .++++....+|.+...
T Consensus 191 ~y~~~~~~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 191 NYLVGFGNVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred HHHHhccccccccccchhhhHHHHHHHh
Confidence 44332 3566777777777654
No 467
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=50.05 E-value=1.2e+02 Score=23.42 Aligned_cols=17 Identities=6% Similarity=0.003 Sum_probs=6.6
Q ss_pred HHhcCChhHHHHHHHHH
Q 048394 328 LAKLNAIDILKQCFEEW 344 (485)
Q Consensus 328 ~~~~~~~~~a~~~~~~~ 344 (485)
+.+.++++.+.++.+.+
T Consensus 81 ~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 81 HYRLKEYSKSLRYVDAL 97 (149)
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 33333333333333333
No 468
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=49.38 E-value=72 Score=20.80 Aligned_cols=33 Identities=12% Similarity=0.199 Sum_probs=18.5
Q ss_pred CCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q 048394 351 YDMRLADVIIRAYLQKDMYEEAALIFNNAKKRA 383 (485)
Q Consensus 351 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 383 (485)
|....++.++..+++..-.++++..+.++...|
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344455555555555555666666666666555
No 469
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.15 E-value=2.9e+02 Score=27.70 Aligned_cols=123 Identities=15% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHh
Q 048394 257 ASIYVKAELFEKAELALKKLEEMKPRD------RKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAK 330 (485)
Q Consensus 257 ~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 330 (485)
..-..+..++..+.+.|+.-..-.+.| ...+..+.-+|.+..+.|.|.+++.++.+..+.+..+-..+..+...
T Consensus 361 A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~ 440 (872)
T KOG4814|consen 361 AKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLA 440 (872)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Q ss_pred cCChhHHHHHHHHHHHc----------------cCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHH
Q 048394 331 LNAIDILKQCFEEWESR----------------CSSYDMRLADVIIRAYLQKDMYEEAALIFNNA 379 (485)
Q Consensus 331 ~~~~~~a~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 379 (485)
.+..++|+......... .+..+......++-...+.=--+.+.+++...
T Consensus 441 E~~Se~AL~~~~~~~s~~~~~~~~~~~l~~~~~~PTt~lsv~~~l~~~n~Q~I~sE~~~~~l~~~ 505 (872)
T KOG4814|consen 441 EDKSEEALTCLQKIKSSEDEKSTDALILAVAECKPTTDLSVQGLLMIFNSQTISSESSSQTLSIL 505 (872)
T ss_pred hcchHHHHHHHHHHHhhhcccccchhHHHHhcCCCchHHHHHHHHHHHhcchhhhcchHHHHHHH
No 470
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=49.04 E-value=86 Score=23.01 Aligned_cols=39 Identities=23% Similarity=0.329 Sum_probs=26.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 048394 82 CVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLT 121 (485)
Q Consensus 82 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (485)
++.-+.+....++|+++++.|.++| ..+...-+.|-..+
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L 105 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSIL 105 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4455666777888888888888887 45665554444433
No 471
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=48.97 E-value=2.4e+02 Score=26.65 Aligned_cols=59 Identities=10% Similarity=0.076 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHh--------cCCCChHHHHHHHHHHHhcCChhhHHHHHHHhh
Q 048394 253 YSNLASIYVKAELFEKAELALKKLEE--------MKPRDRKAYHFLISLYCNTSNLDAVNRVWGILK 311 (485)
Q Consensus 253 ~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 311 (485)
...|++.++-.||+..|+++++.+.- ..+-...++.-+.-+|...+++.+|.+.|..+.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577888899999999999887643 122346677788889999999999999998763
No 472
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=48.76 E-value=2.3e+02 Score=26.54 Aligned_cols=35 Identities=6% Similarity=0.016 Sum_probs=15.8
Q ss_pred cCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHh
Q 048394 366 KDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLR 402 (485)
Q Consensus 366 ~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 402 (485)
+|+.+.-..+|.-....-. .|....|..++.-|.+
T Consensus 362 ng~~q~~ks~f~y~cpkfl--sp~~~~~dgv~~~y~k 396 (525)
T KOG3677|consen 362 NGDPQVFKSLFSYLCPKFL--SPVVPNYDGVLPNYHK 396 (525)
T ss_pred cCChHHHHHHHHHcCcccc--CCCCcccccccccccc
Confidence 3555544444444333333 4444555444444433
No 473
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=48.34 E-value=1e+02 Score=22.57 Aligned_cols=27 Identities=11% Similarity=0.059 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHH
Q 048394 392 SRESFMIYYLRSRQLDLALNEMEAALS 418 (485)
Q Consensus 392 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 418 (485)
-|..|+..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 366777778888888888888887766
No 474
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=47.45 E-value=1.2e+02 Score=22.70 Aligned_cols=114 Identities=10% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHhhcCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHH
Q 048394 50 LSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAA 129 (485)
Q Consensus 50 l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 129 (485)
|.+-+.+...+..+++.+...|...|.......+....+ ..-.....+-..+.+.| .+.......+. .....+.
T Consensus 1 L~~kg~~~e~I~~vi~~l~~~gyidD~~ya~~~v~~~~~-~~~~G~~~I~~~L~~kG--i~~~~i~~~l~---~~~~~e~ 74 (121)
T PF02631_consen 1 LKRKGFSEEAIEEVIDRLKELGYIDDERYAESYVRSRLR-RKGKGPRRIRQKLKQKG--IDREIIEEALE---EYDEEEE 74 (121)
T ss_dssp HHHTT--HHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH-HTT--HHHHHHHHHHTT----HHHHHHHHT---CS-HHHH
T ss_pred CcccCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcc-cccccHHHHHHHHHHHC--CChHHHHHHHH---HhhHHHH
Q ss_pred HHHHHHhhcc---cCCCHhHHHHHHHHHHhcC-cHHHHHHHHHH
Q 048394 130 AEKYFNGLSE---YAKNRYTYGALLNCYCKEL-MTERALALFEK 169 (485)
Q Consensus 130 a~~~~~~~~~---~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~ 169 (485)
|.++..+-.. ..++.....-++..+.+.| +++.+..++++
T Consensus 75 a~~~~~kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~~i~~vi~~ 118 (121)
T PF02631_consen 75 ALELAEKKYRRYRKPSDRKRKQKLIRFLMRRGFSYDVIRRVISE 118 (121)
T ss_dssp HHHHHHHHHHHTTTS-CHHHHHHHHHHHHHTT--HHHHHHHCHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCCHHHHHHHHhh
No 475
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=46.86 E-value=2.6e+02 Score=26.55 Aligned_cols=27 Identities=19% Similarity=0.132 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 048394 216 TYIVWMQSYSHLNDIDGVERVFYEMCN 242 (485)
Q Consensus 216 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (485)
+...+|+-|...|+..+..+.++.+-.
T Consensus 347 ~~~~IIqEYFlsgDt~Evi~~L~DLn~ 373 (645)
T KOG0403|consen 347 DLTPIIQEYFLSGDTPEVIRSLRDLNL 373 (645)
T ss_pred hhHHHHHHHHhcCChHHHHHHHHHcCC
Confidence 345678888888888888888776644
No 476
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=46.27 E-value=35 Score=18.51 Aligned_cols=20 Identities=5% Similarity=0.059 Sum_probs=7.9
Q ss_pred HHHHHHHHhhcccCCCHhHH
Q 048394 128 AAAEKYFNGLSEYAKNRYTY 147 (485)
Q Consensus 128 ~~a~~~~~~~~~~~~~~~~~ 147 (485)
+.|..+|++.....|++.+|
T Consensus 4 dRAR~IyeR~v~~hp~~k~W 23 (32)
T PF02184_consen 4 DRARSIYERFVLVHPEVKNW 23 (32)
T ss_pred HHHHHHHHHHHHhCCCchHH
Confidence 33444444443333333333
No 477
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.07 E-value=3.4e+02 Score=28.46 Aligned_cols=180 Identities=12% Similarity=0.018 Sum_probs=116.3
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHH
Q 048394 86 LRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALA 165 (485)
Q Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 165 (485)
..-++++++.+.+.+...--| .++|..+.+.|..+-|+.+.+.-.. -| ..+...|+++.|++
T Consensus 603 ALi~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~t------RF----~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 603 ALLNKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERT------RF----ELALECGNLEVALE 664 (1202)
T ss_pred HHHhhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcch------he----eeehhcCCHHHHHH
Confidence 344567787777766543333 3467777788988888877654332 11 23457799999988
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccC
Q 048394 166 LFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECE 245 (485)
Q Consensus 166 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 245 (485)
.-.++- |..+|..|.......|+.+-|+..|+..+. |.-|--.|.-.|+.++-.++.+....
T Consensus 665 ~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~--- 726 (1202)
T KOG0292|consen 665 AAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEI--- 726 (1202)
T ss_pred HHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHh---
Confidence 654432 566999999999999999999999988765 33344456677888887777666544
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhc
Q 048394 246 DKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKST 313 (485)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 313 (485)
..|... ......-.|+.++-..+++.. .. -+..|.. -..+|.-+.|.++.++....
T Consensus 727 -r~D~~~---~~qnalYl~dv~ervkIl~n~---g~-~~laylt----a~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 727 -RNDATG---QFQNALYLGDVKERVKILENG---GQ-LPLAYLT----AAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred -hhhhHH---HHHHHHHhccHHHHHHHHHhc---Cc-ccHHHHH----HhhcCcHHHHHHHHHhhccc
Confidence 112222 111222357888877777663 22 2333332 22467778888888887764
No 478
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=46.03 E-value=2.5e+02 Score=26.10 Aligned_cols=258 Identities=15% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhC-------CCCCChhhHHHHHHHHHhC-------CCcccHHHHHHHHHHcCCC
Q 048394 146 TYGALLNCYCKELMTERALALFEKMDEL-------KFLGNTVAFNNLSTMYLRL-------GQPEKVRPLVNQMKQRNIS 211 (485)
Q Consensus 146 ~~~~li~~~~~~~~~~~A~~~~~~m~~~-------~~~p~~~~~~~l~~~~~~~-------g~~~~a~~~~~~~~~~~~~ 211 (485)
+|..++.+..+.+..+...+-..+..+. ...+....+-+.+....+. ...+-...+..-..+.|-+
T Consensus 3 ~w~~~i~s~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~R~p~LA~lel~~~~~~~~~~~~~~~~~~~l~~Y~~~f~~K 82 (365)
T PF09797_consen 3 VWKLLIDSAFELGKSEEELEDVQEFLESLQAESSQSNPKSRGPYLARLELAKRLRERGDAPDEEDLLELLEEYFDKFGSK 82 (365)
T ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHhccCCccchhHHHHHHHHHHHhCCC
Q ss_pred c----cHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHh------------cccHHHHHHHH
Q 048394 212 L----DNLTYIVWMQSYSHLNDIDGVERVFYEMCNECE--DKCRWTTYSNLASIYVK------------AELFEKAELAL 273 (485)
Q Consensus 212 p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~------------~~~~~~A~~~~ 273 (485)
| |...|...+ +.++..++++.+..... .+.+.......+.++-- .+..+.+.+++
T Consensus 83 ~cCf~DL~~Y~~~L-------~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~in~~kl~r~~~~~~~~~~~~~~~~~~~~~ 155 (365)
T PF09797_consen 83 PCCFDDLKPYLESL-------DPEERKELLEKLLEKIEADSKEDIKQLIRHINALKLSRFLGLHFSLSSESLLDLAQELL 155 (365)
T ss_pred CEeHHHHHHHHHhC-------CHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhcccccCChhhHHHHHHHHH
Q ss_pred HHHHhcCCCChH--------------HHHHHHHHHHhcCChh---hHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhH
Q 048394 274 KKLEEMKPRDRK--------------AYHFLISLYCNTSNLD---AVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDI 336 (485)
Q Consensus 274 ~~~~~~~~~~~~--------------~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 336 (485)
.......+.... +-..+++.+...++.. .|.-+++......+.+...-..++..|...|-.+.
T Consensus 156 ~~y~~~l~~~~~l~te~~~~d~~~lla~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~ 235 (365)
T PF09797_consen 156 KLYQESLSLGKDLKTESQPADELALLAAHSLLDLYSKTKDSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSL 235 (365)
T ss_pred HHHHhhCccccccccccCchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHH
Q ss_pred HHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHH-HHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHH
Q 048394 337 LKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAA-LIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEME 414 (485)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 414 (485)
|.+.|..+.-+.+..|...+. +..-+...|....+. ..++.....- .-+.......+....+.|.+.+..++.+
T Consensus 236 A~~~~~~L~iK~IQ~DTL~h~-~~~r~~~~~~~~~~~~~~~~~~~~fy---~~~~~~~~e~i~~af~~gsysKi~ef~~ 310 (365)
T PF09797_consen 236 ALEHYESLDIKNIQLDTLGHL-ILDRLSTLGPFKSAPENLLENALKFY---DNSEKETPEFIIKAFENGSYSKIEEFIE 310 (365)
T ss_pred HHHHHHhcChHHHHHHHhHHH-HHHHHhccCcccccchHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCchhHHHHHH
No 479
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=45.96 E-value=1.2e+02 Score=30.30 Aligned_cols=91 Identities=8% Similarity=0.108 Sum_probs=60.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhhCCHH------HHHHHHHhhcccCCCHhHHHHHHH
Q 048394 81 YCVRSLRKFGRYRHALEVIEWMESR--KMHFSYTDFAVYLDLTAKTNGIA------AAEKYFNGLSEYAKNRYTYGALLN 152 (485)
Q Consensus 81 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~li~ 152 (485)
.++.+|...|++..+.++++..... |-+.-...||..|+...+.|.++ .|.+.+++.. ..-|..||..|+.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~-ln~d~~t~all~~ 111 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR-LNGDSLTYALLCQ 111 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh-cCCcchHHHHHHH
Confidence 8889999999999999999988554 33344567888888888888654 2333333333 4567778888877
Q ss_pred HHHhcCcHHHHHHHHHHHHh
Q 048394 153 CYCKELMTERALALFEKMDE 172 (485)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~ 172 (485)
+-...-+-.-..-++.+...
T Consensus 112 ~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 112 ASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred hhcChHhHHhccHHHHHHHH
Confidence 66553333334444544444
No 480
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=45.72 E-value=2.6e+02 Score=26.21 Aligned_cols=56 Identities=16% Similarity=0.095 Sum_probs=40.7
Q ss_pred HHHHHhcCChhhHHHHHHHhhhcCCC-Chh--hHHHHHHHHHh--cCChhHHHHHHHHHHHc
Q 048394 291 ISLYCNTSNLDAVNRVWGILKSTFPP-TNT--SYLVLLQALAK--LNAIDILKQCFEEWESR 347 (485)
Q Consensus 291 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~l~~~~~~--~~~~~~a~~~~~~~~~~ 347 (485)
+..+.+.+++..|.++++.+... .+ +.. .+..+..+|.. .-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44555899999999999999987 44 332 44555565554 66788999999887665
No 481
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=45.44 E-value=2e+02 Score=24.84 Aligned_cols=99 Identities=10% Similarity=-0.147 Sum_probs=61.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHH------ccCCCCHHhHH-------HH----HHHHHhcCcHHHHHHHHHHHH
Q 048394 318 NTSYLVLLQALAKLNAIDILKQCFEEWES------RCSSYDMRLAD-------VI----IRAYLQKDMYEEAALIFNNAK 380 (485)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~-------~l----~~~~~~~~~~~~A~~~~~~~~ 380 (485)
..+...-.+-+.+.|++.+|..-|.+... ..-+|...-|- .| -.++...|++-++++.-.++.
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 34444456678889999999999987643 23345555442 22 234445677778887777777
Q ss_pred hcccccCCchh-HHHHHHHHHHhcccHHHHHHHHHHHHHHh
Q 048394 381 KRANASARFFK-SRESFMIYYLRSRQLDLALNEMEAALSEA 420 (485)
Q Consensus 381 ~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 420 (485)
.. .|+.. .|-.-..+.+..=+.++|..-|...+...
T Consensus 258 ~~----~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 258 RH----HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred hc----CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 65 66543 33333334444446777778788877753
No 482
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=45.08 E-value=2.3e+02 Score=25.88 Aligned_cols=64 Identities=13% Similarity=0.106 Sum_probs=42.4
Q ss_pred hhHHHHHHHhhhcCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHH
Q 048394 301 DAVNRVWGILKSTFPP---TNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYL 364 (485)
Q Consensus 301 ~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 364 (485)
+++..+++.+...-|. -..-|..++......|.++.++.+|+++...|..|-...-..++..+.
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4566666666655554 345566677777777777777778887777777776666665555544
No 483
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=44.70 E-value=3.4e+02 Score=27.21 Aligned_cols=60 Identities=10% Similarity=-0.014 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHh
Q 048394 391 KSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLK 456 (485)
Q Consensus 391 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 456 (485)
..-.-++..|.+.|-.+.|.++++.+-..- -...-|..-+..+.+.||......+...+.
T Consensus 406 ~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~------~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 406 DDAEKLLEICAELGLEDVAREICKILGQRL------LKEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHHHH------HHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------HHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334445555555555555555555544432 122234444444555555555544444444
No 484
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.62 E-value=3.1e+02 Score=26.70 Aligned_cols=32 Identities=6% Similarity=-0.007 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC
Q 048394 146 TYGALLNCYCKELMTERALALFEKMDELKFLG 177 (485)
Q Consensus 146 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 177 (485)
.+..++......+....|+.++++|.+.|..|
T Consensus 250 ~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~ 281 (484)
T PRK14956 250 FLTSFIKSLIDPDNHSKSLEILESLYQEGQDI 281 (484)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCH
Confidence 33444444333333455666666666655444
No 485
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.32 E-value=2.7e+02 Score=26.07 Aligned_cols=95 Identities=12% Similarity=0.049 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHhCCCcccHHHHHHHHHHcC--CCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcc--------CCCCc
Q 048394 180 VAFNNLSTMYLRLGQPEKVRPLVNQMKQRN--ISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNEC--------EDKCR 249 (485)
Q Consensus 180 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~ 249 (485)
..+.-+...|...|+++.|++.|.+..+.- .+-....|..+|..-.-.|+|.....+..+..+.. ..++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 356778888999999999999999966541 12234455556666667788877777776666521 22333
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHH
Q 048394 250 WTTYSNLASIYVKAELFEKAELALKKL 276 (485)
Q Consensus 250 ~~~~~~l~~~~~~~~~~~~A~~~~~~~ 276 (485)
...+..+.... .+++..|...|-..
T Consensus 231 l~C~agLa~L~--lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 231 LKCAAGLANLL--LKKYKSAAKYFLLA 255 (466)
T ss_pred hHHHHHHHHHH--HHHHHHHHHHHHhC
Confidence 33444444433 33666666555443
No 486
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=44.21 E-value=1.9e+02 Score=27.04 Aligned_cols=149 Identities=11% Similarity=0.091 Sum_probs=71.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 048394 217 YIVWMQSYSHLNDIDGVERVFYEMCNEC-EDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYC 295 (485)
Q Consensus 217 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 295 (485)
...|++...-.|+.....+.++.+.+.- +..|.-.+---++-+|.-.+++.+|.+.|-...--.......+....-.|.
T Consensus 238 L~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLlyIqrtks~~~~~~y~~d 317 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILLYIQRTKSMFSRTTYQYD 317 (525)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhHh
Confidence 3445666677788777777777666511 222222111335667777788888888776654411101111111111111
Q ss_pred h-cCChhhHHHHHHHhhhcCCC--ChhhHHHHHHHHH------hcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHh
Q 048394 296 N-TSNLDAVNRVWGILKSTFPP--TNTSYLVLLQALA------KLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQ 365 (485)
Q Consensus 296 ~-~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 365 (485)
. .+.++....++.-.....|. |......+...|. ..|+.+.-..+|-.....-..|.+..|..+..-|.+
T Consensus 318 ~inKq~eqm~~llai~l~~yPq~iDESi~s~l~Ek~~d~ml~mqng~~q~~ks~f~y~cpkflsp~~~~~dgv~~~y~k 396 (525)
T KOG3677|consen 318 MINKQNEQMHHLLAICLSMYPQMIDESIHSQLAEKYGDKMLPMQNGDPQVFKSLFSYLCPKFLSPVVPNYDGVLPNYHK 396 (525)
T ss_pred hhhhhHHHHHHHHHHHHHhCchhhhHHHHHHHHHHhcchhhhhhcCChHHHHHHHHHcCccccCCCCcccccccccccc
Confidence 1 22333334444444433444 4333333333322 346666656665555444455555556555554444
No 487
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=44.09 E-value=3.2e+02 Score=26.80 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=12.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHhh
Q 048394 289 FLISLYCNTSNLDAVNRVWGILK 311 (485)
Q Consensus 289 ~l~~~~~~~~~~~~a~~~~~~~~ 311 (485)
.++.-|.+.+++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 44445555555555555555553
No 488
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=43.33 E-value=59 Score=18.11 Aligned_cols=18 Identities=22% Similarity=0.191 Sum_probs=9.1
Q ss_pred HHHHHHhhcCChhhHHHH
Q 048394 434 TFFRFFEEEKDVDGAEEF 451 (485)
Q Consensus 434 ~l~~~~~~~~~~~~A~~~ 451 (485)
.+.-.+-..|++++|+.+
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 334444555666666665
No 489
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=43.29 E-value=2.5e+02 Score=25.37 Aligned_cols=16 Identities=19% Similarity=0.162 Sum_probs=8.0
Q ss_pred hcCcHHHHHHHHHHHH
Q 048394 365 QKDMYEEAALIFNNAK 380 (485)
Q Consensus 365 ~~~~~~~A~~~~~~~~ 380 (485)
+.|+..+|.+.|+.+.
T Consensus 287 klGrlrEA~K~~RDL~ 302 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLM 302 (556)
T ss_pred HhhhHHHHHHHHHHHh
Confidence 4455555555554443
No 490
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=42.33 E-value=2.4e+02 Score=24.75 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 048394 78 MLEYCVRSLRKFGRYRHALEVIEWME 103 (485)
Q Consensus 78 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 103 (485)
.+..+++.+.+.+....|..+.+.+.
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~ 109 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYR 109 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhc
Confidence 34556666666666666666665553
No 491
>PF08314 Sec39: Secretory pathway protein Sec39; InterPro: IPR013244 Sec39 was originally identified as a protein involved in ER-Golgi transport in a large scale promoter shut down analysis of essential yeast genes []. A subsequent study found that Sec39p (Dsl3p) is required for Golgi-ER retrograde transport and is part of a very stable protein complex that also includes Dsl1p (in mammals ZW10), Tip20p (Rint-1) and the ER localized Q-SNARE proteins Ufe1p (syntaxin-18), Sec20p and Use1p []. This was confirmed in a genome-wide analysis of protein complexes []. ; PDB: 3K8P_D.
Probab=42.29 E-value=3.5e+02 Score=28.13 Aligned_cols=65 Identities=18% Similarity=0.175 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-----------hhCCHHHHHHHHHhhcc
Q 048394 74 VRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTA-----------KTNGIAAAEKYFNGLSE 139 (485)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~g~~~~a~~~~~~~~~ 139 (485)
+.......+++++...|+++.|.+++..-....+ +.......++.+.. ..|.++.|.++++-+..
T Consensus 430 ~~~~~~~~~l~~LL~~~~f~la~~~~~~~~~~~l-~~~~~~~lvl~~~~e~fd~Asn~n~~~g~lk~A~~~L~l~~~ 505 (715)
T PF08314_consen 430 SKDEIEEIFLEALLSSGRFSLAKSLYEESSSSPL-SSEKVEDLVLKAAWEFFDNASNGNRTRGGLKKARECLNLFPP 505 (715)
T ss_dssp -HHHHHHHHHHHHHHTT-HHHHHHHHHHTT---T-T-HHHHHHHHHHHHHHHHH-SS--TTSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHhcCCcCCC-CHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccC
Confidence 3455667778888888999988888876432212 22333333333221 23455666666665554
No 492
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=42.21 E-value=2e+02 Score=23.92 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhh-HHHHHHHHHhcCC
Q 048394 284 RKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTS-YLVLLQALAKLNA 333 (485)
Q Consensus 284 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~ 333 (485)
....+.++..|...|+++.|.+.|.-+......|... |..=+..+.+.+.
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~ 91 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGE 91 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCC
Confidence 4567889999999999999999999888765445433 3333333333333
No 493
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=41.54 E-value=2.6e+02 Score=25.04 Aligned_cols=274 Identities=13% Similarity=0.029 Sum_probs=0.0
Q ss_pred CCCChhhHHHHHH--HHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHH
Q 048394 107 MHFSYTDFAVYLD--LTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNN 184 (485)
Q Consensus 107 ~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 184 (485)
+.|....++.+|+ .|...+--++..+++..+.-..++...--+++.+..-.+ |..|-.+.-..
T Consensus 107 i~~~~qvf~KliRRykyLeK~fE~e~~k~Llflk~F~e~Er~KLA~~Tal~l~n---------------Gt~~~tvl~~L 171 (412)
T KOG2297|consen 107 IRNSVQVFQKLIRRYKYLEKNFENEMRKFLLFLKLFEENERKKLAMLTALLLSN---------------GTLPATVLQSL 171 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhC---------------CCCCHHHHHHH
Q ss_pred HHHHHHhCC-CcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhc
Q 048394 185 LSTMYLRLG-QPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKA 263 (485)
Q Consensus 185 l~~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 263 (485)
+=..+.+.| -..=|.++|++.... ...+.++.++.+.+.-+.-.++| ||+..+-......+...
T Consensus 172 ~~d~LVkeGi~l~F~~~lFk~~~~E------k~i~~lis~Lrkg~md~rLmeff---------Ppnkrs~E~Fak~Ft~a 236 (412)
T KOG2297|consen 172 LNDNLVKEGIALSFAVKLFKEWLVE------KDINDLISSLRKGKMDDRLMEFF---------PPNKRSVEHFAKYFTDA 236 (412)
T ss_pred HHhhHHHHhHHHHHHHHHHHHHHhh------ccHHHHHHHHHhcChHhHHHHhc---------CCcchhHHHHHHHHhHh
Q ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHH-HhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 048394 264 ELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWG-ILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFE 342 (485)
Q Consensus 264 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 342 (485)
|--+-..-.=.++..+.. ...-..|.+-......+++...... +|++...|++.....+-++......+..-.++..
T Consensus 237 gL~elvey~~~q~~~~a~--kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva 314 (412)
T KOG2297|consen 237 GLKELVEYHRNQQSEGAR--KELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVA 314 (412)
T ss_pred hHHHHHHHHHHHHHHHHH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHH
Q ss_pred HHHHccCCCCHHhHHHHHHHHHhcCcHH---------------HHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHH
Q 048394 343 EWESRCSSYDMRLADVIIRAYLQKDMYE---------------EAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLD 407 (485)
Q Consensus 343 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~---------------~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 407 (485)
+-.-. ...+|..|+.+++..|+.+ .-.+.|+++...-. ..+..+=..++.-|-......
T Consensus 315 ~qalr----hlK~yaPLL~af~s~g~sEL~Ll~KvQe~CYen~~fMKaFqkiV~lfY--k~dVLsEe~IL~Wyk~gh~~K 388 (412)
T KOG2297|consen 315 EQALR----HLKQYAPLLAAFCSQGQSELELLLKVQEYCYENIHFMKAFQKIVVLFY--KADVLSEETILKWYKEGHVAK 388 (412)
T ss_pred HHHHH----HHHhhhHHHHHHhcCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--HHHhhhhHHHHHHHHhccccc
Q ss_pred HHHHHHHHHHH
Q 048394 408 LALNEMEAALS 418 (485)
Q Consensus 408 ~A~~~~~~~~~ 418 (485)
.=..+++.|..
T Consensus 389 Gk~~Fleqmkk 399 (412)
T KOG2297|consen 389 GKSVFLEQMKK 399 (412)
T ss_pred cHHHHHHHHHH
No 494
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=40.68 E-value=5.4e+02 Score=28.40 Aligned_cols=158 Identities=11% Similarity=-0.021 Sum_probs=98.2
Q ss_pred HHHHhcccHHHHHH------HHHHHHh-cCCCChHHHHHHHHHHHhcCChhhHHHHHHHh-------hhcCCC-ChhhHH
Q 048394 258 SIYVKAELFEKAEL------ALKKLEE-MKPRDRKAYHFLISLYCNTSNLDAVNRVWGIL-------KSTFPP-TNTSYL 322 (485)
Q Consensus 258 ~~~~~~~~~~~A~~------~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~-~~~~~~ 322 (485)
......|.+.+|.+ ++..... ..+.....|..+...+-+.|+.++|...-... .....+ +...|.
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 33444566666666 6663333 66677888999999999999999988765432 222333 556677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc-----cC-CCCH-HhHHHHHHHHHhcCcHHHHHHHHHHHHhccc-----ccCCch
Q 048394 323 VLLQALAKLNAIDILKQCFEEWESR-----CS-SYDM-RLADVIIRAYLQKDMYEEAALIFNNAKKRAN-----ASARFF 390 (485)
Q Consensus 323 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~p~~ 390 (485)
.+.......++...|...+...... |. .|.. .+++.+-..+...++++.|.++++.+..... ..-+..
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~ 1099 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETA 1099 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhh
Confidence 7776677777888888887766542 22 4443 3444444444555888999999888765311 002344
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHH
Q 048394 391 KSRESFMIYYLRSRQLDLALNEMEA 415 (485)
Q Consensus 391 ~~~~~l~~~~~~~g~~~~A~~~~~~ 415 (485)
.++..+.+.+...+++..|....+.
T Consensus 1100 ~~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1100 LSYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 5566666666666666665544433
No 495
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=39.50 E-value=1.4e+02 Score=26.09 Aligned_cols=64 Identities=19% Similarity=-0.073 Sum_probs=49.8
Q ss_pred HHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHH
Q 048394 397 MIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSA 465 (485)
Q Consensus 397 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 465 (485)
=..+.+.++++.|....++.+.. .+-|+.-+.--...|.+.|....|..-++...+..|.++.+
T Consensus 188 k~~~~~e~~~~~al~~~~r~l~l-----~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 188 KAALLRELQWELALRVAERLLDL-----NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHhhchHHHHHHHHHHHhh-----CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 34577888999999999998887 45566667777777888888888998888888877766543
No 496
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=39.35 E-value=3.8e+02 Score=26.32 Aligned_cols=25 Identities=12% Similarity=0.164 Sum_probs=20.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 048394 79 LEYCVRSLRKFGRYRHALEVIEWME 103 (485)
Q Consensus 79 ~~~l~~~~~~~~~~~~A~~~~~~~~ 103 (485)
...++..|.+.+++++|+.++..|.
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC
Confidence 3456778899999999999988873
No 497
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.26 E-value=4.8e+02 Score=27.39 Aligned_cols=302 Identities=10% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHH
Q 048394 84 RSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERA 163 (485)
Q Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 163 (485)
+.|...|+++.|++.-..-.+. -..++..-...|.+.+++..|-+++.++ ...|..+.--+....+.+ +
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~----le~Vl~~qAdf~f~~k~y~~AA~~yA~t------~~~FEEVaLKFl~~~~~~-~ 434 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDA----LETVLLKQADFLFQDKEYLRAAEIYAET------LSSFEEVALKFLEINQER-A 434 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHH----HHHHHHHHHHHHHhhhHHHHHHHHHHHh------hhhHHHHHHHHHhcCCHH-H
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHH------HhCCCcc----cHHHHHHHHHH---------cCCCccHHHHHHHHHHH
Q 048394 164 LALFEKMDELKFLGNTVAFNNLSTMY------LRLGQPE----KVRPLVNQMKQ---------RNISLDNLTYIVWMQSY 224 (485)
Q Consensus 164 ~~~~~~m~~~~~~p~~~~~~~l~~~~------~~~g~~~----~a~~~~~~~~~---------~~~~p~~~~~~~l~~~~ 224 (485)
+..|-.=+-..++|...+-..++..+ .+.++.+ ++.+-++.-.+ ....-+.....+..+.+
T Consensus 435 L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~ 514 (911)
T KOG2034|consen 435 LRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLL 514 (911)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHH
Q ss_pred HhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHH
Q 048394 225 SHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVN 304 (485)
Q Consensus 225 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 304 (485)
...|+.+....+-.-+.. |..++..+++.+.+++|++++.. ....-......--.....+....
T Consensus 515 ~~~~~~e~ll~fA~l~~d----------~~~vv~~~~q~e~yeeaLevL~~------~~~~el~yk~ap~Li~~~p~~tV 578 (911)
T KOG2034|consen 515 ASHGRQEELLQFANLIKD----------YEFVVSYWIQQENYEEALEVLLN------QRNPELFYKYAPELITHSPKETV 578 (911)
T ss_pred HHccCHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHh------ccchhhHHHhhhHHHhcCcHHHH
Q ss_pred HHHHHhhhcCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q 048394 305 RVWGILKSTFPP-TNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRA 383 (485)
Q Consensus 305 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 383 (485)
..|....+..++ -......+-..--.......+...++-....-..-++..+|.++..|++ +..+.....++.....+
T Consensus 579 ~~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~-~~~~~ll~~le~~~~~~ 657 (911)
T KOG2034|consen 579 SAWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAK-HERDDLLLYLEIIKFMK 657 (911)
T ss_pred HHHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhc-CCccchHHHHHHHhhcc
Q ss_pred cccCCchhHHHHHHHHHHhcccHHHHHHHHHHH
Q 048394 384 NASARFFKSRESFMIYYLRSRQLDLALNEMEAA 416 (485)
Q Consensus 384 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (485)
- . ...-....++.|.+.+.-..+..++..|
T Consensus 658 ~--~-~~YDl~~alRlc~~~~~~ra~V~l~~~l 687 (911)
T KOG2034|consen 658 S--R-VHYDLDYALRLCLKFKKTRACVFLLCML 687 (911)
T ss_pred c--c-ceecHHHHHHHHHHhCccceeeeHHHHH
No 498
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=39.19 E-value=1.5e+02 Score=21.68 Aligned_cols=42 Identities=19% Similarity=0.149 Sum_probs=26.4
Q ss_pred CCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 048394 57 GGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMES 104 (485)
Q Consensus 57 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 104 (485)
.=.+..+-+.+.+.+. |..++..|...|..++|++++..+..
T Consensus 26 ~C~~~~~e~~L~~~~~------~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 26 YCDLEEVEEVLKEHGK------YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred cCCHHHHHHHHHHcCC------HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3344444444444433 67777777777777888777777755
No 499
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=39.09 E-value=3e+02 Score=24.99 Aligned_cols=95 Identities=11% Similarity=0.079 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHhhhc----CCC-ChhhHHH-HHHHHHhcCChhHHHHHHHHHHHccCCCC----H
Q 048394 284 RKAYHFLISLYCNTSNLDAVNRVWGILKST----FPP-TNTSYLV-LLQALAKLNAIDILKQCFEEWESRCSSYD----M 353 (485)
Q Consensus 284 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~ 353 (485)
...+......|++.|+.+.|.+.+.+..+. |.. |...+.. +.-.|....-+.+-++..+.+.+.|-..+ .
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 345556666677777777776666544332 333 3333222 22222222223334444444455554433 2
Q ss_pred HhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 048394 354 RLADVIIRAYLQKDMYEEAALIFNNAK 380 (485)
Q Consensus 354 ~~~~~l~~~~~~~~~~~~A~~~~~~~~ 380 (485)
.+|..+-. ....++.+|-.+|-...
T Consensus 184 KvY~Gly~--msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 184 KVYQGLYC--MSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHH--HHHHhHHHHHHHHHHHc
Confidence 34443332 23356777777765554
No 500
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=38.31 E-value=2.1e+02 Score=23.04 Aligned_cols=61 Identities=3% Similarity=-0.134 Sum_probs=36.7
Q ss_pred HHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHh
Q 048394 170 MDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDID 231 (485)
Q Consensus 170 m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 231 (485)
+...|+.++.. -..++..+...++.-.|.++++.+.+.+..++..|..-.+..+...|-+.
T Consensus 17 L~~~GlR~T~q-R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQ-RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHH-HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 34556654433 33455555555666777888888877766666666555666666665443
Done!