Query 048394
Match_columns 485
No_of_seqs 703 out of 2670
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 15:46:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048394.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048394hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 6.9E-41 2.4E-45 331.5 40.1 427 47-484 87-571 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.4E-39 4.8E-44 322.1 36.9 412 50-474 123-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 4.2E-33 1.4E-37 260.4 47.9 383 82-478 5-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 5E-31 1.7E-35 246.3 43.3 355 117-484 5-360 (388)
5 4g26_A Pentatricopeptide repea 100.0 5.4E-31 1.8E-35 249.9 21.6 203 60-263 9-223 (501)
6 4g26_A Pentatricopeptide repea 100.0 4.3E-30 1.5E-34 243.7 22.7 204 93-297 7-223 (501)
7 2gw1_A Mitochondrial precursor 100.0 2.4E-27 8.2E-32 229.9 41.6 383 76-470 6-490 (514)
8 2gw1_A Mitochondrial precursor 100.0 7.5E-27 2.6E-31 226.5 39.1 365 111-484 6-470 (514)
9 2y4t_A DNAJ homolog subfamily 100.0 3.1E-26 1.1E-30 218.3 40.9 376 73-484 23-446 (450)
10 2y4t_A DNAJ homolog subfamily 100.0 4E-26 1.4E-30 217.5 39.9 318 144-475 26-375 (450)
11 3fp2_A TPR repeat-containing p 100.0 1.6E-24 5.4E-29 211.4 41.3 378 77-467 26-500 (537)
12 3fp2_A TPR repeat-containing p 99.9 1.7E-24 5.9E-29 211.1 37.2 366 111-484 25-483 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 1.2E-23 4.1E-28 193.9 39.4 330 112-478 4-355 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 3E-22 1E-26 184.5 38.4 331 75-440 2-351 (359)
15 3hym_B Cell division cycle pro 99.9 1.3E-22 4.6E-27 184.6 33.4 294 177-479 20-321 (330)
16 1fch_A Peroxisomal targeting s 99.9 3.8E-22 1.3E-26 184.6 27.9 283 192-484 38-351 (368)
17 3hym_B Cell division cycle pro 99.9 5E-21 1.7E-25 174.1 33.3 294 141-446 19-322 (330)
18 2ooe_A Cleavage stimulation fa 99.9 7.7E-20 2.6E-24 177.5 42.5 401 72-483 9-483 (530)
19 1fch_A Peroxisomal targeting s 99.9 3.1E-21 1.1E-25 178.5 27.5 271 180-457 65-358 (368)
20 4g1t_A Interferon-induced prot 99.9 6.2E-20 2.1E-24 175.8 37.4 376 73-470 48-471 (472)
21 2xm6_A Protein corresponding t 99.9 3.5E-18 1.2E-22 164.1 47.0 370 73-475 36-452 (490)
22 4eqf_A PEX5-related protein; a 99.9 1.2E-21 4E-26 181.2 21.9 261 213-483 64-347 (365)
23 4eqf_A PEX5-related protein; a 99.9 5.2E-21 1.8E-25 176.8 22.8 267 144-415 65-352 (365)
24 3cv0_A Peroxisome targeting si 99.9 2.9E-20 1E-24 168.8 27.1 258 216-484 23-307 (327)
25 4g1t_A Interferon-induced prot 99.9 9E-19 3.1E-23 167.7 35.6 354 109-484 49-451 (472)
26 2xm6_A Protein corresponding t 99.9 3.8E-17 1.3E-21 156.9 45.8 355 95-484 26-424 (490)
27 3cv0_A Peroxisome targeting si 99.9 1.3E-19 4.6E-24 164.4 26.1 271 181-458 23-315 (327)
28 2ooe_A Cleavage stimulation fa 99.9 1.2E-17 4.1E-22 162.1 40.5 394 57-461 25-495 (530)
29 3mkr_A Coatomer subunit epsilo 99.8 1.2E-18 4.2E-23 154.5 27.9 256 83-350 6-267 (291)
30 3mkr_A Coatomer subunit epsilo 99.8 7.1E-19 2.4E-23 156.0 25.9 257 189-467 9-273 (291)
31 1b89_A Protein (clathrin heavy 99.8 1.6E-18 5.4E-23 157.0 20.7 359 74-480 30-405 (449)
32 1b89_A Protein (clathrin heavy 99.8 6.2E-20 2.1E-24 166.2 10.8 281 123-450 15-303 (449)
33 3uq3_A Heat shock protein STI1 99.8 1.8E-17 6.2E-22 144.8 25.1 238 215-472 6-256 (258)
34 2pl2_A Hypothetical conserved 99.8 2.3E-17 7.9E-22 139.8 22.8 204 248-484 3-206 (217)
35 2h6f_A Protein farnesyltransfe 99.8 8E-17 2.7E-21 147.6 27.3 251 214-476 97-366 (382)
36 1xi4_A Clathrin heavy chain; a 99.8 1.2E-15 4.1E-20 154.1 37.2 358 73-483 982-1375(1630)
37 3u4t_A TPR repeat-containing p 99.8 6.5E-17 2.2E-21 142.6 25.1 251 217-477 6-269 (272)
38 3spa_A Mtrpol, DNA-directed RN 99.8 9.1E-20 3.1E-24 178.1 6.4 150 109-264 125-286 (1134)
39 1xi4_A Clathrin heavy chain; a 99.8 7.5E-15 2.5E-19 148.4 40.8 350 79-477 1052-1415(1630)
40 2q7f_A YRRB protein; TPR, prot 99.8 4.1E-17 1.4E-21 141.2 21.9 221 248-477 21-241 (243)
41 3uq3_A Heat shock protein STI1 99.8 1.5E-16 5.1E-21 139.0 25.3 224 144-380 5-234 (258)
42 1xnf_A Lipoprotein NLPI; TPR, 99.8 6.2E-17 2.1E-21 142.9 22.8 249 226-484 17-267 (275)
43 2pl2_A Hypothetical conserved 99.8 9.6E-17 3.3E-21 136.0 22.0 199 211-416 2-211 (217)
44 3spa_A Mtrpol, DNA-directed RN 99.8 2.7E-19 9.1E-24 174.8 6.3 150 144-298 127-286 (1134)
45 2vq2_A PILW, putative fimbrial 99.8 9E-16 3.1E-20 130.9 27.3 215 247-469 5-222 (225)
46 2ho1_A Type 4 fimbrial biogene 99.8 5.1E-16 1.8E-20 135.1 25.7 209 251-467 38-247 (252)
47 3e4b_A ALGK; tetratricopeptide 99.8 2.8E-16 9.6E-21 148.6 24.8 347 81-463 8-392 (452)
48 3u4t_A TPR repeat-containing p 99.7 1E-15 3.5E-20 134.9 26.3 233 147-382 6-250 (272)
49 2h6f_A Protein farnesyltransfe 99.7 2.2E-15 7.4E-20 138.1 27.2 244 183-439 101-363 (382)
50 2ho1_A Type 4 fimbrial biogene 99.7 3.7E-15 1.3E-19 129.7 27.2 201 214-420 37-239 (252)
51 3sf4_A G-protein-signaling mod 99.7 3.2E-16 1.1E-20 146.6 21.2 307 143-481 8-365 (406)
52 2q7f_A YRRB protein; TPR, prot 99.7 7.7E-16 2.6E-20 133.1 21.4 200 214-419 23-222 (243)
53 2vq2_A PILW, putative fimbrial 99.7 7E-15 2.4E-19 125.3 27.1 201 213-419 7-211 (225)
54 3sf4_A G-protein-signaling mod 99.7 1.1E-15 3.6E-20 143.2 23.0 308 109-446 7-364 (406)
55 4e6h_A MRNA 3'-END-processing 99.7 1E-12 3.5E-17 128.5 44.1 415 59-483 50-561 (679)
56 1xnf_A Lipoprotein NLPI; TPR, 99.7 4.7E-15 1.6E-19 130.8 22.7 248 192-452 18-269 (275)
57 1ouv_A Conserved hypothetical 99.7 1.4E-13 4.8E-18 121.2 31.7 229 214-465 6-258 (273)
58 4abn_A Tetratricopeptide repea 99.7 4E-15 1.4E-19 141.6 22.6 211 264-484 82-313 (474)
59 4a1s_A PINS, partner of inscut 99.7 1.4E-15 4.9E-20 142.6 18.6 276 180-460 49-374 (411)
60 4a1s_A PINS, partner of inscut 99.7 5.3E-15 1.8E-19 138.7 21.5 275 144-420 48-373 (411)
61 2ond_A Cleavage stimulation fa 99.7 9.2E-14 3.1E-18 124.6 28.6 185 231-419 81-270 (308)
62 2ond_A Cleavage stimulation fa 99.7 9E-14 3.1E-18 124.7 27.6 222 231-461 33-273 (308)
63 3ro2_A PINS homolog, G-protein 99.7 9.7E-15 3.3E-19 132.7 21.2 281 149-459 10-333 (338)
64 1ouv_A Conserved hypothetical 99.7 2.8E-13 9.5E-18 119.3 29.9 216 248-484 4-243 (273)
65 3ro2_A PINS homolog, G-protein 99.7 4.4E-15 1.5E-19 135.0 18.8 261 221-484 12-324 (338)
66 3vtx_A MAMA; tetratricopeptide 99.6 6.3E-14 2.2E-18 115.4 23.1 165 250-418 5-169 (184)
67 3ulq_A Response regulator aspa 99.6 2.6E-14 8.8E-19 132.6 22.0 298 154-459 22-369 (383)
68 3vtx_A MAMA; tetratricopeptide 99.6 1.2E-13 3.9E-18 113.8 22.7 167 213-382 4-170 (184)
69 3e4b_A ALGK; tetratricopeptide 99.6 4.2E-14 1.4E-18 133.7 22.6 371 58-458 17-421 (452)
70 4e6h_A MRNA 3'-END-processing 99.6 2.5E-11 8.7E-16 118.6 40.6 384 92-482 48-523 (679)
71 3ulq_A Response regulator aspa 99.6 1.8E-13 6E-18 127.0 24.3 232 185-420 109-369 (383)
72 4abn_A Tetratricopeptide repea 99.6 7.1E-14 2.4E-18 133.0 21.1 193 213-411 101-313 (474)
73 3nf1_A KLC 1, kinesin light ch 99.6 2.8E-14 9.5E-19 128.2 15.4 241 215-460 28-309 (311)
74 3nf1_A KLC 1, kinesin light ch 99.6 2.5E-14 8.4E-19 128.5 14.8 238 246-484 23-299 (311)
75 3q15_A PSP28, response regulat 99.6 6.4E-12 2.2E-16 116.2 30.3 232 220-458 107-365 (378)
76 1hz4_A MALT regulatory protein 99.6 1.3E-11 4.3E-16 114.0 31.2 303 146-461 16-352 (373)
77 4i17_A Hypothetical protein; T 99.5 4.4E-12 1.5E-16 108.3 25.2 209 248-473 5-224 (228)
78 3q15_A PSP28, response regulat 99.5 1.3E-12 4.4E-17 120.9 23.3 228 253-484 104-357 (378)
79 3as5_A MAMA; tetratricopeptide 99.5 1.5E-12 5.2E-17 107.0 19.9 166 287-461 11-176 (186)
80 1hz4_A MALT regulatory protein 99.5 5.4E-11 1.8E-15 109.8 30.9 295 115-419 18-349 (373)
81 3as5_A MAMA; tetratricopeptide 99.5 4.8E-12 1.7E-16 103.9 21.0 161 217-380 11-171 (186)
82 4gyw_A UDP-N-acetylglucosamine 99.5 1.6E-12 5.5E-17 128.6 20.4 170 246-419 5-174 (723)
83 4gyw_A UDP-N-acetylglucosamine 99.5 1.8E-12 6.1E-17 128.3 20.7 167 213-382 8-174 (723)
84 4i17_A Hypothetical protein; T 99.5 1.2E-11 4.3E-16 105.4 21.4 193 180-382 8-209 (228)
85 3qky_A Outer membrane assembly 99.4 1.9E-11 6.5E-16 106.6 21.5 214 247-483 12-252 (261)
86 1qqe_A Vesicular transport pro 99.4 1E-11 3.5E-16 110.2 19.8 187 285-473 78-284 (292)
87 3edt_B KLC 2, kinesin light ch 99.4 8E-12 2.7E-16 110.3 16.5 227 190-419 12-281 (283)
88 3mv2_B Coatomer subunit epsilo 99.4 3.9E-10 1.3E-14 98.0 24.7 190 269-466 85-290 (310)
89 4ga2_A E3 SUMO-protein ligase 99.4 6.4E-12 2.2E-16 99.2 11.8 146 324-478 3-149 (150)
90 2pzi_A Probable serine/threoni 99.4 1.4E-11 4.7E-16 122.6 16.8 173 295-477 402-582 (681)
91 3edt_B KLC 2, kinesin light ch 99.4 1.9E-11 6.5E-16 107.8 15.8 229 225-458 12-281 (283)
92 3qky_A Outer membrane assembly 99.3 1.6E-10 5.4E-15 100.8 21.0 189 212-420 13-225 (261)
93 1qqe_A Vesicular transport pro 99.3 8.4E-11 2.9E-15 104.3 19.2 192 189-380 47-267 (292)
94 3dra_A Protein farnesyltransfe 99.3 2.4E-09 8.2E-14 94.1 27.8 235 230-472 49-302 (306)
95 3mv2_B Coatomer subunit epsilo 99.3 6.3E-10 2.2E-14 96.7 23.0 242 57-319 26-288 (310)
96 3urz_A Uncharacterized protein 99.3 9.7E-11 3.3E-15 98.1 17.2 33 256-288 10-42 (208)
97 2uy1_A Cleavage stimulation fa 99.3 3.1E-09 1.1E-13 100.9 28.7 93 78-173 17-118 (493)
98 2pzi_A Probable serine/threoni 99.3 5.9E-11 2E-15 118.0 17.5 173 261-443 402-582 (681)
99 3dra_A Protein farnesyltransfe 99.3 2.1E-09 7.1E-14 94.5 25.0 212 264-484 47-279 (306)
100 3urz_A Uncharacterized protein 99.3 1.6E-10 5.6E-15 96.7 17.2 131 256-392 60-192 (208)
101 2fo7_A Synthetic consensus TPR 99.3 4.3E-10 1.5E-14 86.6 18.1 131 321-460 4-134 (136)
102 2fo7_A Synthetic consensus TPR 99.3 4.9E-10 1.7E-14 86.3 17.9 124 256-380 7-130 (136)
103 4ga2_A E3 SUMO-protein ligase 99.3 4.6E-11 1.6E-15 94.2 12.0 142 223-367 6-148 (150)
104 3qou_A Protein YBBN; thioredox 99.2 5.1E-10 1.7E-14 98.9 17.8 157 317-483 116-275 (287)
105 2yhc_A BAMD, UPF0169 lipoprote 99.2 2.1E-09 7.3E-14 91.2 20.9 189 249-463 3-218 (225)
106 3qou_A Protein YBBN; thioredox 99.2 9.1E-10 3.1E-14 97.2 19.1 170 247-418 114-283 (287)
107 2vsy_A XCC0866; transferase, g 99.2 3.7E-10 1.3E-14 110.3 17.9 154 263-420 2-158 (568)
108 2uy1_A Cleavage stimulation fa 99.2 1.3E-07 4.3E-12 89.9 34.6 369 42-457 13-412 (493)
109 2r5s_A Uncharacterized protein 99.2 2.6E-10 8.9E-15 92.7 14.0 161 254-418 10-172 (176)
110 2yhc_A BAMD, UPF0169 lipoprote 99.2 3.9E-09 1.3E-13 89.5 21.2 103 296-420 108-214 (225)
111 2r5s_A Uncharacterized protein 99.2 5E-10 1.7E-14 91.0 13.9 158 220-380 12-171 (176)
112 2vsy_A XCC0866; transferase, g 99.2 1.3E-09 4.3E-14 106.6 18.8 156 192-350 2-160 (568)
113 2ifu_A Gamma-SNAP; membrane fu 99.2 2.3E-09 7.9E-14 95.7 18.5 208 226-460 3-225 (307)
114 4gco_A Protein STI-1; structur 99.1 2E-09 6.7E-14 81.8 15.2 113 353-473 13-125 (126)
115 3dss_A Geranylgeranyl transfer 99.1 2.4E-07 8.2E-12 81.9 29.2 198 266-474 90-320 (331)
116 2ifu_A Gamma-SNAP; membrane fu 99.1 2.7E-09 9.1E-14 95.3 16.4 228 191-450 3-253 (307)
117 3q7a_A Farnesyltransferase alp 99.1 1.2E-07 4E-12 84.2 25.7 238 229-472 69-346 (349)
118 2vyi_A SGTA protein; chaperone 99.1 9E-09 3.1E-13 78.6 16.3 121 352-480 11-131 (131)
119 1na0_A Designed protein CTPR3; 99.1 8.9E-09 3.1E-13 77.8 16.1 117 353-477 9-125 (125)
120 2c2l_A CHIP, carboxy terminus 99.0 3.8E-09 1.3E-13 92.9 14.3 195 249-458 3-199 (281)
121 2lni_A Stress-induced-phosphop 99.0 8.4E-09 2.9E-13 79.1 14.6 119 352-478 15-133 (133)
122 3u3w_A Transcriptional activat 99.0 7.4E-08 2.5E-12 85.3 22.6 168 289-458 80-266 (293)
123 3rjv_A Putative SEL1 repeat pr 99.0 2.5E-08 8.6E-13 83.6 17.9 15 368-382 183-197 (212)
124 4f3v_A ESX-1 secretion system 99.0 3.2E-09 1.1E-13 91.1 12.2 197 262-470 18-248 (282)
125 3rjv_A Putative SEL1 repeat pr 99.0 4.7E-08 1.6E-12 81.9 19.3 127 144-278 18-157 (212)
126 4gco_A Protein STI-1; structur 99.0 1.1E-08 3.6E-13 77.7 13.8 96 252-347 15-110 (126)
127 1a17_A Serine/threonine protei 99.0 1.5E-08 5E-13 81.2 14.6 132 318-458 13-146 (166)
128 2qfc_A PLCR protein; TPR, HTH, 99.0 1.8E-07 6.3E-12 82.8 22.9 173 285-459 76-267 (293)
129 2vgx_A Chaperone SYCD; alterna 99.0 4E-09 1.4E-13 82.7 10.7 105 353-465 21-125 (148)
130 3u3w_A Transcriptional activat 99.0 1.8E-07 6.2E-12 82.8 22.6 164 257-420 82-267 (293)
131 3q7a_A Farnesyltransferase alp 99.0 5E-07 1.7E-11 80.2 25.0 219 125-381 68-330 (349)
132 1hh8_A P67PHOX, NCF-2, neutrop 99.0 6E-08 2E-12 81.3 18.4 131 324-461 12-153 (213)
133 1a17_A Serine/threonine protei 99.0 4.8E-08 1.7E-12 78.1 16.9 92 255-346 18-109 (166)
134 1hh8_A P67PHOX, NCF-2, neutrop 99.0 8.1E-08 2.8E-12 80.5 18.8 128 217-349 9-152 (213)
135 2qfc_A PLCR protein; TPR, HTH, 99.0 3.2E-07 1.1E-11 81.2 23.6 169 252-420 77-267 (293)
136 2c2l_A CHIP, carboxy terminus 98.9 4.8E-09 1.7E-13 92.2 11.5 180 282-476 2-182 (281)
137 1p5q_A FKBP52, FK506-binding p 98.9 1E-09 3.6E-14 99.2 7.3 87 391-482 197-283 (336)
138 3gyz_A Chaperone protein IPGC; 98.9 3.5E-09 1.2E-13 82.9 9.2 93 254-346 40-132 (151)
139 2fbn_A 70 kDa peptidylprolyl i 98.9 3.2E-09 1.1E-13 88.1 9.3 125 353-483 38-176 (198)
140 2e2e_A Formate-dependent nitri 98.9 2.3E-08 7.8E-13 81.2 13.3 118 264-382 24-144 (177)
141 1elw_A TPR1-domain of HOP; HOP 98.9 8.3E-08 2.9E-12 71.5 15.6 114 352-473 3-116 (118)
142 3gyz_A Chaperone protein IPGC; 98.9 4.7E-09 1.6E-13 82.2 8.7 103 279-382 31-133 (151)
143 3upv_A Heat shock protein STI1 98.9 6E-08 2.1E-12 73.6 14.8 115 353-475 4-124 (126)
144 2e2e_A Formate-dependent nitri 98.9 3E-08 1E-12 80.5 13.7 123 331-462 23-148 (177)
145 1na0_A Designed protein CTPR3; 98.9 9.2E-08 3.2E-12 72.1 15.2 94 219-314 14-107 (125)
146 3dss_A Geranylgeranyl transfer 98.9 2.3E-06 7.8E-11 75.6 25.9 200 262-470 41-279 (331)
147 2vyi_A SGTA protein; chaperone 98.9 6E-08 2.1E-12 73.8 14.2 109 219-329 17-125 (131)
148 2vgx_A Chaperone SYCD; alterna 98.9 3.3E-08 1.1E-12 77.4 12.5 100 248-347 19-118 (148)
149 2lni_A Stress-induced-phosphop 98.9 8E-08 2.7E-12 73.5 14.5 13 263-275 63-75 (133)
150 3gw4_A Uncharacterized protein 98.9 8.2E-08 2.8E-12 79.7 15.6 161 297-459 5-177 (203)
151 2xcb_A PCRH, regulatory protei 98.9 1.3E-08 4.3E-13 79.3 9.7 105 355-467 20-124 (142)
152 3gw4_A Uncharacterized protein 98.9 7.5E-08 2.6E-12 79.9 14.9 157 263-420 5-177 (203)
153 3q49_B STIP1 homology and U bo 98.8 8.5E-08 2.9E-12 73.9 13.5 117 352-476 8-129 (137)
154 4f3v_A ESX-1 secretion system 98.8 4.3E-08 1.5E-12 84.1 12.6 198 226-435 18-247 (282)
155 3sz7_A HSC70 cochaperone (SGT) 98.8 1.3E-07 4.3E-12 75.6 14.3 102 355-464 13-114 (164)
156 1p5q_A FKBP52, FK506-binding p 98.8 1.6E-07 5.3E-12 84.8 16.4 87 285-372 197-283 (336)
157 2xcb_A PCRH, regulatory protei 98.8 6.9E-08 2.4E-12 75.0 12.1 99 249-347 17-115 (142)
158 3upv_A Heat shock protein STI1 98.8 1.8E-07 6.2E-12 70.9 14.3 96 252-347 6-101 (126)
159 2dba_A Smooth muscle cell asso 98.8 2.5E-07 8.5E-12 72.2 15.5 115 352-475 27-145 (148)
160 2fbn_A 70 kDa peptidylprolyl i 98.8 1.7E-08 5.8E-13 83.7 8.5 62 286-347 90-151 (198)
161 3rkv_A Putative peptidylprolyl 98.8 1.7E-07 5.8E-12 74.7 13.6 123 355-482 13-151 (162)
162 1elr_A TPR2A-domain of HOP; HO 98.8 2.4E-07 8.4E-12 70.4 13.9 120 353-478 4-127 (131)
163 1elw_A TPR1-domain of HOP; HOP 98.7 5.7E-07 1.9E-11 66.9 15.4 98 217-316 7-104 (118)
164 1kt0_A FKBP51, 51 kDa FK506-bi 98.7 1.2E-08 3.9E-13 96.5 6.0 88 391-483 318-405 (457)
165 2xev_A YBGF; tetratricopeptide 98.7 7.9E-07 2.7E-11 67.5 15.0 109 358-475 7-122 (129)
166 4gcn_A Protein STI-1; structur 98.7 7.7E-07 2.6E-11 67.4 14.6 107 355-467 10-120 (127)
167 1dce_A Protein (RAB geranylger 98.7 1.5E-06 5.2E-11 83.9 19.9 172 301-481 46-244 (567)
168 4gcn_A Protein STI-1; structur 98.7 7.4E-07 2.5E-11 67.5 14.0 109 319-434 9-121 (127)
169 2kck_A TPR repeat; tetratricop 98.7 4.1E-07 1.4E-11 66.9 12.4 103 352-462 5-110 (112)
170 3sz7_A HSC70 cochaperone (SGT) 98.7 5.8E-07 2E-11 71.7 14.0 100 215-316 12-111 (164)
171 3q49_B STIP1 homology and U bo 98.7 7.3E-07 2.5E-11 68.5 13.9 100 248-347 7-106 (137)
172 2kck_A TPR repeat; tetratricop 98.6 3.1E-07 1.1E-11 67.6 10.7 89 221-311 13-104 (112)
173 1hxi_A PEX5, peroxisome target 98.6 5.3E-07 1.8E-11 67.7 11.8 99 356-462 20-118 (121)
174 4b4t_Q 26S proteasome regulato 98.6 2.5E-06 8.6E-11 80.1 19.3 171 287-457 58-244 (434)
175 3k9i_A BH0479 protein; putativ 98.6 1.8E-07 6.1E-12 69.9 9.2 111 366-481 3-113 (117)
176 1ihg_A Cyclophilin 40; ppiase 98.6 3.4E-07 1.2E-11 83.6 12.8 121 356-484 226-362 (370)
177 4b4t_Q 26S proteasome regulato 98.6 1.9E-05 6.5E-10 74.0 24.7 56 151-206 11-82 (434)
178 1wao_1 Serine/threonine protei 98.6 2.5E-07 8.7E-12 87.6 11.4 116 361-484 14-131 (477)
179 2dba_A Smooth muscle cell asso 98.6 2.2E-06 7.6E-11 66.7 15.0 97 216-314 30-129 (148)
180 2l6j_A TPR repeat-containing p 98.6 8.4E-07 2.9E-11 65.2 11.7 91 389-484 3-99 (111)
181 1hxi_A PEX5, peroxisome target 98.6 6.9E-07 2.4E-11 67.0 11.0 91 256-346 23-113 (121)
182 1elr_A TPR2A-domain of HOP; HO 98.6 8.1E-07 2.8E-11 67.4 11.5 22 359-380 85-106 (131)
183 2xev_A YBGF; tetratricopeptide 98.5 6.3E-06 2.2E-10 62.4 15.3 92 256-347 8-105 (129)
184 3ro3_A PINS homolog, G-protein 98.5 1.6E-06 5.4E-11 68.6 11.9 141 318-459 9-159 (164)
185 3ro3_A PINS homolog, G-protein 98.5 2.9E-06 9.9E-11 67.1 13.4 134 285-419 10-158 (164)
186 1wao_1 Serine/threonine protei 98.5 1.1E-06 3.7E-11 83.3 12.4 122 184-308 11-134 (477)
187 1dce_A Protein (RAB geranylger 98.4 1.9E-05 6.5E-10 76.2 20.4 173 266-447 45-244 (567)
188 3k9i_A BH0479 protein; putativ 98.4 1.7E-06 5.9E-11 64.4 9.7 90 192-283 3-94 (117)
189 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 3.8E-06 1.3E-10 79.2 14.2 145 193-338 248-405 (457)
190 3rkv_A Putative peptidylprolyl 98.4 5.8E-06 2E-10 65.6 12.8 102 217-318 14-131 (162)
191 1ihg_A Cyclophilin 40; ppiase 98.4 4.5E-06 1.6E-10 76.1 13.5 117 254-371 227-359 (370)
192 1na3_A Designed protein CTPR2; 98.4 6.1E-06 2.1E-10 57.9 11.5 84 389-477 8-91 (91)
193 2hr2_A Hypothetical protein; a 98.3 3.9E-06 1.3E-10 64.9 10.3 93 392-484 13-123 (159)
194 2if4_A ATFKBP42; FKBP-like, al 98.3 2.7E-06 9.1E-11 76.8 9.9 131 318-474 179-309 (338)
195 2if4_A ATFKBP42; FKBP-like, al 98.3 3.2E-06 1.1E-10 76.2 10.1 94 252-345 232-326 (338)
196 2hr2_A Hypothetical protein; a 98.2 2.4E-05 8.1E-10 60.5 12.0 60 254-313 15-86 (159)
197 2kat_A Uncharacterized protein 98.1 1.4E-05 4.7E-10 59.1 9.2 78 233-312 4-81 (115)
198 1zu2_A Mitochondrial import re 98.1 1.8E-05 6.1E-10 61.1 9.7 98 364-469 13-131 (158)
199 2l6j_A TPR repeat-containing p 98.1 5.5E-06 1.9E-10 60.7 6.6 90 214-305 4-99 (111)
200 2kat_A Uncharacterized protein 98.1 4.4E-05 1.5E-09 56.3 11.4 80 336-419 3-82 (115)
201 1na3_A Designed protein CTPR2; 98.0 5.7E-05 1.9E-09 52.8 10.4 75 217-293 12-86 (91)
202 3ma5_A Tetratricopeptide repea 97.9 9.3E-05 3.2E-09 53.0 10.0 86 389-479 6-93 (100)
203 3n71_A Histone lysine methyltr 97.9 0.00012 4.1E-09 68.9 13.3 64 354-418 394-463 (490)
204 3n71_A Histone lysine methyltr 97.9 8E-05 2.7E-09 70.1 11.9 97 286-382 353-464 (490)
205 1zu2_A Mitochondrial import re 97.9 8E-05 2.7E-09 57.4 9.8 86 262-347 14-120 (158)
206 3ma5_A Tetratricopeptide repea 97.9 5.9E-05 2E-09 54.0 8.6 66 247-312 4-69 (100)
207 1klx_A Cysteine rich protein B 97.8 0.00051 1.7E-08 52.5 13.2 112 332-460 9-128 (138)
208 1klx_A Cysteine rich protein B 97.8 0.00094 3.2E-08 51.0 13.9 111 264-383 9-127 (138)
209 2kc7_A BFR218_protein; tetratr 97.7 0.00048 1.6E-08 48.9 10.6 73 397-474 7-82 (99)
210 3ly7_A Transcriptional activat 97.7 0.0023 7.7E-08 56.9 16.2 64 352-419 276-339 (372)
211 3ly7_A Transcriptional activat 97.6 0.0032 1.1E-07 55.9 16.7 150 279-463 189-344 (372)
212 2kc7_A BFR218_protein; tetratr 97.5 0.00024 8.3E-09 50.5 6.7 59 258-316 8-67 (99)
213 2v5f_A Prolyl 4-hydroxylase su 97.4 0.0033 1.1E-07 45.0 11.3 81 390-470 5-87 (104)
214 3bee_A Putative YFRE protein; 97.3 0.0033 1.1E-07 43.9 10.6 70 247-316 3-75 (93)
215 3qww_A SET and MYND domain-con 97.3 0.0017 5.8E-08 60.1 11.6 103 365-467 310-425 (433)
216 1pc2_A Mitochondria fission pr 97.3 0.005 1.7E-07 46.9 12.0 93 368-468 13-110 (152)
217 3qwp_A SET and MYND domain-con 97.3 0.0036 1.2E-07 58.0 13.5 114 360-473 294-423 (429)
218 4h7y_A Dual specificity protei 97.1 0.019 6.4E-07 43.1 12.5 105 279-384 8-125 (161)
219 3qww_A SET and MYND domain-con 97.0 0.0084 2.9E-07 55.4 12.9 89 330-419 310-411 (433)
220 4ady_A RPN2, 26S proteasome re 97.0 0.062 2.1E-06 54.0 19.4 158 258-419 498-658 (963)
221 3qwp_A SET and MYND domain-con 97.0 0.0084 2.9E-07 55.5 12.7 25 182-206 374-398 (429)
222 3mkq_B Coatomer subunit alpha; 97.0 0.072 2.4E-06 41.7 15.6 104 118-240 12-115 (177)
223 3bee_A Putative YFRE protein; 97.0 0.0065 2.2E-07 42.3 9.0 67 281-347 3-72 (93)
224 3u64_A Protein TP_0956; tetrat 96.9 0.011 3.8E-07 50.3 11.5 92 266-357 179-281 (301)
225 2v5f_A Prolyl 4-hydroxylase su 96.9 0.014 4.8E-07 41.7 10.5 76 213-288 4-84 (104)
226 3mkq_A Coatomer beta'-subunit; 96.8 0.17 5.7E-06 51.4 21.6 75 218-310 633-707 (814)
227 3lvg_A Clathrin heavy chain 1; 96.7 4.2E-05 1.4E-09 69.2 -4.8 245 42-304 52-324 (624)
228 3mkq_A Coatomer beta'-subunit; 96.7 0.026 8.9E-07 57.4 15.1 45 122-170 663-707 (814)
229 3mkq_B Coatomer subunit alpha; 96.6 0.081 2.8E-06 41.4 13.5 131 83-241 12-142 (177)
230 3u64_A Protein TP_0956; tetrat 96.5 0.047 1.6E-06 46.5 12.5 107 300-416 179-295 (301)
231 1wy6_A Hypothetical protein ST 96.4 0.17 5.7E-06 37.2 13.2 58 325-383 98-155 (172)
232 1pc2_A Mitochondria fission pr 96.4 0.036 1.2E-06 42.2 10.1 21 399-419 80-100 (152)
233 1nzn_A CGI-135 protein, fissio 96.4 0.06 2.1E-06 39.4 10.8 94 367-468 15-113 (126)
234 4gns_B Protein CSD3, chitin bi 96.3 0.045 1.5E-06 53.9 12.5 48 436-483 344-391 (754)
235 4h7y_A Dual specificity protei 96.3 0.095 3.3E-06 39.4 11.3 115 352-474 12-139 (161)
236 4gns_B Protein CSD3, chitin bi 95.7 0.11 3.8E-06 51.2 12.6 125 185-311 254-398 (754)
237 4b4t_P 26S proteasome regulato 95.5 1.5 5.2E-05 40.6 20.7 247 227-476 29-306 (445)
238 1nzn_A CGI-135 protein, fissio 95.3 0.32 1.1E-05 35.5 10.8 84 264-347 15-103 (126)
239 3txn_A 26S proteasome regulato 95.0 2 6.8E-05 38.8 20.3 166 215-380 20-208 (394)
240 1qsa_A Protein (soluble lytic 94.8 3.1 0.00011 40.3 26.1 115 299-418 229-347 (618)
241 3lvg_A Clathrin heavy chain 1; 94.7 9.1E-05 3.1E-09 67.1 -11.2 201 253-475 57-275 (624)
242 3ffl_A Anaphase-promoting comp 94.5 0.64 2.2E-05 35.7 10.9 111 360-473 27-165 (167)
243 1wy6_A Hypothetical protein ST 94.2 1.2 4.1E-05 32.8 14.2 137 86-242 17-153 (172)
244 4ady_A RPN2, 26S proteasome re 94.1 5.8 0.0002 40.2 32.5 91 325-419 497-589 (963)
245 4fhn_B Nucleoporin NUP120; pro 93.8 4.3 0.00015 42.9 19.5 143 116-265 817-986 (1139)
246 4b4t_P 26S proteasome regulato 93.8 4.1 0.00014 37.7 25.5 255 192-454 29-320 (445)
247 3o48_A Mitochondria fission 1 93.7 1.5 5.1E-05 32.2 11.3 77 387-467 37-116 (134)
248 1v54_E Cytochrome C oxidase po 93.2 0.73 2.5E-05 31.8 8.1 63 405-471 25-87 (109)
249 2ff4_A Probable regulatory pro 93.2 1.6 5.3E-05 39.7 13.2 55 290-344 177-231 (388)
250 1y8m_A FIS1; mitochondria, unk 93.1 0.99 3.4E-05 33.6 9.4 88 57-145 19-111 (144)
251 3lpz_A GET4 (YOR164C homolog); 93.0 4.3 0.00015 35.5 20.8 84 246-346 132-215 (336)
252 3lpz_A GET4 (YOR164C homolog); 92.9 4.4 0.00015 35.4 15.0 138 320-478 37-182 (336)
253 3o48_A Mitochondria fission 1 92.8 0.82 2.8E-05 33.6 8.5 87 59-145 22-112 (134)
254 4fhn_B Nucleoporin NUP120; pro 92.6 11 0.00036 39.9 20.2 142 220-369 818-987 (1139)
255 2wpv_A GET4, UPF0363 protein Y 92.4 5 0.00017 34.8 14.8 138 318-476 33-178 (312)
256 2wpv_A GET4, UPF0363 protein Y 92.4 5.1 0.00017 34.8 19.3 73 202-274 80-158 (312)
257 3ffl_A Anaphase-promoting comp 92.3 1.1 3.7E-05 34.5 9.0 58 221-278 27-91 (167)
258 1v54_E Cytochrome C oxidase po 92.2 0.54 1.8E-05 32.4 6.3 46 197-242 28-73 (109)
259 1zbp_A Hypothetical protein VP 90.9 3.8 0.00013 34.4 11.6 54 328-382 7-60 (273)
260 2y69_E Cytochrome C oxidase su 90.7 1.8 6E-05 31.7 8.1 61 407-471 70-130 (152)
261 1y8m_A FIS1; mitochondria, unk 89.8 4.9 0.00017 29.9 12.9 77 387-467 36-115 (144)
262 2p58_C Putative type III secre 89.5 3.8 0.00013 28.2 8.9 79 88-174 19-99 (116)
263 3eiq_C Programmed cell death p 89.1 12 0.0004 33.3 13.9 63 321-384 220-284 (358)
264 2uwj_G Type III export protein 89.1 3.6 0.00012 28.2 8.0 79 88-174 18-98 (115)
265 2ff4_A Probable regulatory pro 87.6 2.3 7.9E-05 38.6 8.8 56 256-311 177-232 (388)
266 1zbp_A Hypothetical protein VP 87.2 2.8 9.5E-05 35.2 8.2 57 223-281 6-62 (273)
267 4b4t_R RPN7, 26S proteasome re 86.1 20 0.0007 32.8 15.2 100 319-419 132-237 (429)
268 4b4t_R RPN7, 26S proteasome re 85.7 18 0.00061 33.2 13.9 99 180-278 132-236 (429)
269 3esl_A Checkpoint serine/threo 85.6 9.5 0.00032 30.4 10.1 86 129-215 62-151 (202)
270 2y69_E Cytochrome C oxidase su 84.2 10 0.00036 27.8 9.4 59 371-436 71-129 (152)
271 3txn_A 26S proteasome regulato 83.0 26 0.0009 31.5 24.9 167 180-346 20-209 (394)
272 3esl_A Checkpoint serine/threo 81.0 6 0.0002 31.5 7.3 52 300-351 95-148 (202)
273 4a1g_A Mitotic checkpoint seri 77.7 21 0.0007 27.0 9.6 82 130-214 54-136 (152)
274 2zu6_B Programmed cell death p 74.3 17 0.00059 31.4 8.9 25 115-139 7-31 (307)
275 3e3v_A Regulatory protein RECX 74.2 14 0.00049 28.9 7.8 66 42-108 34-99 (177)
276 2wvi_A Mitotic checkpoint seri 73.5 6.9 0.00023 30.1 5.5 48 337-384 79-127 (164)
277 4a1g_A Mitotic checkpoint seri 73.5 5.8 0.0002 30.0 5.0 48 337-384 84-132 (152)
278 2wvi_A Mitotic checkpoint seri 73.5 29 0.00098 26.7 9.7 84 129-215 48-132 (164)
279 1k1a_A B-cell lymphoma 3-encod 71.9 28 0.00095 28.3 9.8 24 153-176 15-38 (241)
280 1wdy_A 2-5A-dependent ribonucl 68.9 28 0.00097 29.1 9.4 23 330-352 191-213 (285)
281 1k1a_A B-cell lymphoma 3-encod 64.6 48 0.0016 26.9 9.8 85 84-169 14-101 (241)
282 1n11_A Ankyrin; clathrin, BAND 63.2 56 0.0019 29.7 10.8 14 122-135 88-101 (437)
283 4aez_C MAD3, mitotic spindle c 63.0 9 0.00031 31.1 4.4 49 302-350 132-182 (223)
284 3eu9_A Huntingtin-interacting 62.9 18 0.00063 29.4 6.8 13 365-377 219-231 (240)
285 2zu6_B Programmed cell death p 62.7 76 0.0026 27.4 13.7 63 321-384 169-233 (307)
286 1wdy_A 2-5A-dependent ribonucl 62.5 56 0.0019 27.2 10.1 58 258-316 153-211 (285)
287 3kea_A K1L; tropism, ANK repea 62.3 21 0.00073 30.3 7.3 22 256-277 164-185 (285)
288 2nsz_A Programmed cell death p 61.6 44 0.0015 24.4 8.6 24 288-311 11-34 (129)
289 2nsz_A Programmed cell death p 59.9 48 0.0016 24.2 11.0 64 320-384 9-74 (129)
290 2ion_A PDCD4, programmed cell 59.7 35 0.0012 25.8 7.0 24 288-311 13-36 (152)
291 4b4t_S RPN3, 26S proteasome re 59.6 52 0.0018 30.8 9.4 69 214-283 231-303 (523)
292 2uwj_G Type III export protein 59.3 41 0.0014 23.2 7.9 51 399-459 48-98 (115)
293 2p58_C Putative type III secre 59.0 42 0.0014 23.2 8.8 51 399-459 49-99 (116)
294 3eu9_A Huntingtin-interacting 57.1 57 0.002 26.2 8.9 13 123-135 18-30 (240)
295 1ug3_A EIF4GI, eukaryotic prot 56.9 1E+02 0.0035 27.0 10.9 235 148-402 15-256 (339)
296 2ion_A PDCD4, programmed cell 56.6 62 0.0021 24.4 11.0 64 320-384 11-76 (152)
297 2fe3_A Peroxide operon regulat 56.6 50 0.0017 24.6 7.5 66 61-127 7-72 (145)
298 3eiq_C Programmed cell death p 54.8 1.1E+02 0.0039 27.0 12.9 24 80-103 58-81 (358)
299 1n11_A Ankyrin; clathrin, BAND 53.3 74 0.0025 28.9 9.8 9 125-133 124-132 (437)
300 4aez_C MAD3, mitotic spindle c 53.1 89 0.003 25.4 8.6 67 319-389 117-184 (223)
301 2fu4_A Ferric uptake regulatio 50.0 50 0.0017 21.5 6.3 62 65-127 6-68 (83)
302 3kea_A K1L; tropism, ANK repea 49.5 49 0.0017 28.0 7.4 81 289-378 163-243 (285)
303 3d5l_A Regulatory protein RECX 49.3 57 0.0019 26.5 7.2 66 42-108 77-142 (221)
304 3bu8_A Telomeric repeat-bindin 48.5 1E+02 0.0036 24.7 9.1 22 437-458 122-143 (235)
305 2d2s_A Exocyst complex compone 47.4 1.2E+02 0.004 25.0 9.3 26 180-205 92-117 (235)
306 3mv2_A Coatomer subunit alpha; 47.1 1.4E+02 0.0049 25.8 9.9 30 432-461 210-239 (325)
307 4ets_A Ferric uptake regulatio 46.9 61 0.0021 24.8 6.7 65 62-127 19-85 (162)
308 2xig_A Ferric uptake regulatio 45.7 93 0.0032 23.3 7.8 56 312-367 20-75 (150)
309 3dfg_A Xcrecx, regulatory prot 45.6 99 0.0034 23.6 8.3 17 56-72 30-46 (162)
310 3ljn_A Hypothetical protein; a 44.7 1.6E+02 0.0055 25.7 10.4 79 294-378 180-266 (364)
311 2jul_A Calsenilin; EF-hand, ca 44.5 1.3E+02 0.0045 24.8 11.3 27 214-240 229-255 (256)
312 1q02_A Sequestosome 1; helical 44.0 34 0.0012 20.1 3.5 39 59-99 9-47 (52)
313 1s6c_A KV4 potassium channel-i 43.8 1.1E+02 0.0036 23.4 10.9 9 94-102 57-65 (183)
314 3ljn_A Hypothetical protein; a 43.2 1.3E+02 0.0043 26.4 9.4 85 257-343 177-266 (364)
315 3aji_A 26S proteasome non-ATPa 43.1 1.2E+02 0.0042 24.1 8.7 20 118-137 10-29 (231)
316 4gq2_M Nucleoporin NUP120; bet 42.2 2.3E+02 0.0078 29.2 11.9 131 117-264 816-950 (950)
317 2fe3_A Peroxide operon regulat 42.0 1E+02 0.0036 22.8 7.9 61 169-230 12-72 (145)
318 1ya0_A SMG-7 transcript varian 41.7 2.2E+02 0.0076 26.5 11.0 73 359-440 158-231 (497)
319 3hra_A Ankyrin repeat family p 41.5 64 0.0022 25.1 6.5 13 123-135 14-26 (201)
320 2f6m_A Suppressor protein STP2 41.5 63 0.0022 20.2 4.8 50 78-128 4-53 (65)
321 2xig_A Ferric uptake regulatio 40.6 1.1E+02 0.0039 22.8 8.6 62 168-230 16-77 (150)
322 1mzb_A Ferric uptake regulatio 39.8 1.1E+02 0.0037 22.4 7.7 61 169-230 8-69 (136)
323 3c1d_A Protein ORAA, regulator 39.7 1.2E+02 0.0042 22.9 9.4 112 42-158 21-144 (159)
324 3eyy_A Putative iron uptake re 39.4 1.1E+02 0.0036 22.8 6.9 59 169-229 9-67 (145)
325 3gvo_A Pumilio 2, pumilio homo 38.9 1.8E+02 0.0061 25.5 9.5 59 80-138 38-97 (351)
326 2w57_A Ferric uptake regulatio 38.7 1.2E+02 0.0042 22.6 7.2 61 169-230 7-68 (150)
327 2qx5_A Nucleoporin NIC96; mRNA 38.5 2.9E+02 0.0099 26.9 16.5 223 150-416 300-564 (661)
328 3e3v_A Regulatory protein RECX 38.1 1.4E+02 0.0048 23.2 11.1 115 160-277 49-164 (177)
329 1y1x_A Leishmania major homolo 37.9 57 0.002 25.4 5.6 11 160-170 128-138 (191)
330 1mzb_A Ferric uptake regulatio 37.4 98 0.0034 22.6 6.4 16 334-349 34-49 (136)
331 3eyy_A Putative iron uptake re 37.1 88 0.003 23.2 6.1 19 334-352 33-51 (145)
332 3ctd_A Putative ATPase, AAA fa 37.0 1.6E+02 0.0055 23.6 9.2 51 143-193 31-84 (213)
333 4ets_A Ferric uptake regulatio 36.5 1.4E+02 0.0048 22.7 7.3 25 323-347 37-61 (162)
334 3jxi_A Vanilloid receptor-rela 36.3 41 0.0014 27.8 4.7 21 190-210 13-33 (260)
335 2b7e_A PRE-mRNA processing pro 35.5 30 0.001 21.1 2.5 29 161-189 3-31 (59)
336 2d2s_A Exocyst complex compone 35.5 1.8E+02 0.0063 23.8 10.8 91 81-172 23-119 (235)
337 2w57_A Ferric uptake regulatio 35.3 1.1E+02 0.0036 23.0 6.4 43 324-366 22-65 (150)
338 1g1e_B SIN3A; four-helix bundl 35.2 1E+02 0.0035 20.7 7.0 56 405-465 9-78 (89)
339 3ubw_A 14-3-3E, 14-3-3 protein 35.1 2E+02 0.0067 24.0 15.3 51 406-457 172-227 (261)
340 3ltm_A Alpha-REP4; protein eng 34.6 1.7E+02 0.0057 23.0 19.2 142 74-229 31-172 (211)
341 2p1h_A APAF-1, apoptotic prote 34.5 1E+02 0.0036 20.6 7.6 64 59-130 23-86 (94)
342 3bqo_A Telomeric repeat-bindin 33.9 40 0.0014 26.6 3.7 73 406-483 94-171 (211)
343 1ya0_A SMG-7 transcript varian 33.4 3E+02 0.01 25.7 10.4 68 227-296 165-232 (497)
344 2ijq_A Hypothetical protein; s 33.2 1.6E+02 0.0055 22.4 7.5 17 402-418 87-103 (161)
345 3b7b_A Euchromatic histone-lys 33.1 90 0.0031 25.1 6.3 71 62-136 25-99 (237)
346 2keb_A DNA polymerase subunit 32.6 1.2E+02 0.0041 20.8 7.7 60 56-117 24-88 (101)
347 3ph0_C ASCG; type III secretio 32.0 85 0.0029 18.8 4.0 13 471-483 48-60 (61)
348 3hra_A Ankyrin repeat family p 31.3 1.2E+02 0.0041 23.5 6.6 16 121-136 79-94 (201)
349 1qsa_A Protein (soluble lytic 30.6 3.8E+02 0.013 25.9 39.0 49 397-452 388-436 (618)
350 2ijq_A Hypothetical protein; s 30.3 1.8E+02 0.0062 22.1 8.3 48 332-379 46-101 (161)
351 3b7b_A Euchromatic histone-lys 29.8 1.2E+02 0.004 24.4 6.4 18 119-136 49-66 (237)
352 3bge_A Predicted ATPase; struc 29.0 2.2E+02 0.0074 22.6 8.7 44 150-193 10-56 (201)
353 1wgl_A TOLL-interacting protei 28.9 36 0.0012 20.8 2.1 13 332-344 37-49 (59)
354 2r9g_A AAA ATPase, central reg 28.2 2.3E+02 0.0077 22.6 9.4 37 156-193 26-62 (204)
355 3mwm_A ZUR, putative metal upt 27.9 1.2E+02 0.004 22.3 5.4 47 183-229 17-63 (139)
356 2f6m_A Suppressor protein STP2 27.6 1.2E+02 0.0039 19.0 5.2 28 356-383 5-32 (65)
357 2yru_A Steroid receptor RNA ac 27.3 1.4E+02 0.0049 21.3 5.4 41 202-242 49-89 (118)
358 3aji_A 26S proteasome non-ATPa 27.2 2.3E+02 0.0079 22.4 8.7 79 83-163 10-89 (231)
359 2etb_A Transient receptor pote 26.3 2.3E+02 0.0078 23.0 7.7 20 155-174 10-29 (256)
360 4b4t_S RPN3, 26S proteasome re 26.3 4.1E+02 0.014 24.9 16.0 61 112-172 232-298 (523)
361 3d5l_A Regulatory protein RECX 26.0 2.6E+02 0.0089 22.6 12.5 112 159-273 91-203 (221)
362 3uzd_A 14-3-3 protein gamma; s 25.9 2.8E+02 0.0096 22.9 14.1 51 406-457 147-202 (248)
363 3mwm_A ZUR, putative metal upt 25.5 89 0.0031 23.0 4.4 29 325-353 20-48 (139)
364 2o03_A Probable zinc uptake re 25.2 1.3E+02 0.0045 21.7 5.2 44 290-333 16-60 (131)
365 2o03_A Probable zinc uptake re 25.2 1.8E+02 0.0062 21.0 6.0 46 184-229 15-60 (131)
366 1bpo_A Protein (clathrin); cla 25.1 4.1E+02 0.014 24.5 11.1 79 59-138 344-422 (494)
367 3ygs_P Procaspase 9; apoptosis 24.9 1.7E+02 0.0057 19.9 6.4 37 367-409 51-87 (97)
368 3twr_A Tankyrase-2; ankyrin re 24.8 1.7E+02 0.0059 21.6 6.2 14 122-135 16-29 (165)
369 3fap_B FRAP, FKBP12-rapamycin 24.4 1.5E+02 0.005 20.2 4.8 73 398-475 18-92 (94)
370 2yru_A Steroid receptor RNA ac 24.1 1.4E+02 0.0047 21.4 4.8 18 121-138 71-88 (118)
371 2fu4_A Ferric uptake regulatio 23.6 1.5E+02 0.0052 19.0 7.4 60 169-229 7-67 (83)
372 4g8k_A 2-5A-dependent ribonucl 23.6 3.5E+02 0.012 23.1 11.1 48 329-389 281-328 (337)
373 3r88_A Anthranilate phosphorib 22.1 2.9E+02 0.01 24.6 7.7 70 37-107 20-90 (377)
374 1y1x_A Leishmania major homolo 21.6 2.8E+02 0.0095 21.3 10.9 45 42-86 28-72 (191)
375 2ko4_A Mediator of RNA polymer 21.4 70 0.0024 20.7 2.5 22 133-154 25-46 (81)
376 1ixm_A SPO0B, protein (sporula 21.3 1.2E+02 0.0039 24.0 4.4 22 149-170 37-58 (192)
377 2keb_A DNA polymerase subunit 21.3 2E+02 0.007 19.6 6.7 32 197-228 27-58 (101)
378 2rfa_A Transient receptor pote 21.0 3.1E+02 0.011 21.6 9.3 13 123-135 12-24 (232)
379 1s1e_A KV channel interacting 21.0 3.2E+02 0.011 21.8 10.9 48 55-102 48-98 (224)
380 3vu7_H DNA repair protein REV1 21.0 2.4E+02 0.0082 20.3 6.0 47 57-103 38-87 (124)
381 2xai_A ASB-9, ankyrin repeat a 20.8 3.4E+02 0.012 22.1 8.1 15 122-136 44-58 (261)
382 3iqu_A 14-3-3 protein sigma; s 20.8 3.5E+02 0.012 22.2 13.0 51 406-457 149-204 (236)
383 2npu_A FKBP12-rapamycin comple 20.6 2.5E+02 0.0085 20.3 8.0 72 399-475 49-122 (126)
384 2cwy_A Hypothetical protein TT 20.5 2.1E+02 0.007 19.4 5.3 52 400-457 11-67 (94)
385 2crb_A Nuclear receptor bindin 20.4 1.9E+02 0.0064 19.6 4.4 25 393-417 18-42 (97)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.9e-41 Score=331.47 Aligned_cols=427 Identities=9% Similarity=-0.049 Sum_probs=353.9
Q ss_pred HHHHHhhcCCCCcHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhC
Q 048394 47 YKRLSALGATGGSVTGALNAYIME-GKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTN 125 (485)
Q Consensus 47 ~~~l~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (485)
+..+.+.....+...+++..+.+. +..|+..++..++..+.+.|++++|..+|+.+... +++..+++.++.+|.+.|
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 164 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLY 164 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHh
Confidence 333333333344555544443322 34567788888888999999999999998887543 577888888999999999
Q ss_pred CHHHHHHHHHhhcc-c----------------CCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHH---
Q 048394 126 GIAAAEKYFNGLSE-Y----------------AKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNL--- 185 (485)
Q Consensus 126 ~~~~a~~~~~~~~~-~----------------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l--- 185 (485)
++++|.++|+++.. . +++..+|+.++.+|.+.|++++|.++|++|.+.++. +...+..+
T Consensus 165 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~ 243 (597)
T 2xpi_A 165 DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSN 243 (597)
T ss_dssp CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHT
T ss_pred hHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHh
Confidence 99999999985433 2 234778899999999999999999999998876532 23333322
Q ss_pred -----------------------------------HHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 048394 186 -----------------------------------STMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDI 230 (485)
Q Consensus 186 -----------------------------------~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 230 (485)
+..|.+.|++++|.++|+++.+. +++..+++.++.+|.+.|++
T Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 321 (597)
T 2xpi_A 244 HLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRF 321 (597)
T ss_dssp TCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCH
T ss_pred hcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCH
Confidence 44555677888888888888765 57889999999999999999
Q ss_pred hHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHh
Q 048394 231 DGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGIL 310 (485)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 310 (485)
++|.++|+++.+ ..+.+..++..++.+|.+.|++++|..+++.+.+..|.+..+|+.++..|.+.|++++|.++|+++
T Consensus 322 ~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 399 (597)
T 2xpi_A 322 IDVLAITTKILE--IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKS 399 (597)
T ss_dssp HHHHHHHHHHHH--HCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999999987 445577788889999999999999999999999888888999999999999999999999999999
Q ss_pred hhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCch
Q 048394 311 KSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFF 390 (485)
Q Consensus 311 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~ 390 (485)
.+..+.+..+|+.++.+|.+.|++++|.++|+++.+.++. +..+|+.++.+|.+.|++++|..+|+++.+.. +.+.
T Consensus 400 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~ 475 (597)
T 2xpi_A 400 STMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALF---QYDP 475 (597)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CCCH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCh
Confidence 9888778899999999999999999999999999887654 78899999999999999999999999998875 4577
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCcc--HHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHH
Q 048394 391 KSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPM--QVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSL 468 (485)
Q Consensus 391 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 468 (485)
.+|+.++..|.+.|++++|.++|+++.+.....+..|+ ..+|..++.+|.+.|++++|.++++++.+.+|.++.+|..
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 555 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTA 555 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 88999999999999999999999999987433335677 7899999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcchhc
Q 048394 469 LIKTYIAAGKLASDMR 484 (485)
Q Consensus 469 l~~~~~~~g~~~~A~~ 484 (485)
++.+|.+.|++++|++
T Consensus 556 l~~~~~~~g~~~~A~~ 571 (597)
T 2xpi_A 556 IALVYLHKKIPGLAIT 571 (597)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCHHHHHH
Confidence 9999999999999874
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-39 Score=322.06 Aligned_cols=412 Identities=12% Similarity=0.054 Sum_probs=364.3
Q ss_pred HHhhcCCCCcHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH-HhC--------------CCCCChhh
Q 048394 50 LSALGATGGSVTGALNAYIME-GKTVRKDMLEYCVRSLRKFGRYRHALEVIEWM-ESR--------------KMHFSYTD 113 (485)
Q Consensus 50 l~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~--------------~~~~~~~~ 113 (485)
+.......+...+++..+.+. ..+++...+..++..|.+.|++++|+++|+++ ... +.+.+..+
T Consensus 123 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (597)
T 2xpi_A 123 LAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASM 202 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHH
Confidence 333333456677777766654 35788999999999999999999999999953 222 23346789
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHhhcccCCC-HhHHHHH--------------------------------------HHHH
Q 048394 114 FAVYLDLTAKTNGIAAAEKYFNGLSEYAKN-RYTYGAL--------------------------------------LNCY 154 (485)
Q Consensus 114 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l--------------------------------------i~~~ 154 (485)
|+.++.+|.+.|++++|.++|+++.+..|+ ...+..+ +..|
T Consensus 203 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 282 (597)
T 2xpi_A 203 CYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKT 282 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999884443 4443333 5566
Q ss_pred HhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHH
Q 048394 155 CKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVE 234 (485)
Q Consensus 155 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 234 (485)
.+.|++++|.++|+++.+. .++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|.
T Consensus 283 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 359 (597)
T 2xpi_A 283 SHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLY 359 (597)
T ss_dssp TTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHH
T ss_pred cCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHH
Confidence 6889999999999999876 4789999999999999999999999999999875 347788999999999999999999
Q ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcC
Q 048394 235 RVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTF 314 (485)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 314 (485)
++++.+.+ ..+.+..+++.++.+|.+.|++++|.++|+++.+..|.+..+|+.++.+|.+.|++++|.++|+++....
T Consensus 360 ~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 437 (597)
T 2xpi_A 360 LISNDLVD--RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437 (597)
T ss_dssp HHHHHHHH--HCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHh--hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999987 5677899999999999999999999999999999888899999999999999999999999999999988
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhc----ccccCCc-
Q 048394 315 PPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKR----ANASARF- 389 (485)
Q Consensus 315 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~p~- 389 (485)
+.+..++..++.+|.+.|++++|.++|+++.+..+. +..+|+.++.+|.+.|++++|..+|+++.+. +. .|+
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~p~~ 514 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS--NEKP 514 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC--CSGG
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc--chhh
Confidence 889999999999999999999999999999987655 7899999999999999999999999999876 55 676
Q ss_pred -hhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHH
Q 048394 390 -FKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSL 468 (485)
Q Consensus 390 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 468 (485)
..+|..++.+|.+.|++++|.+.++++.+. .+.+..+|..+..+|.+.|++++|.++++++.+..|.++.++..
T Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 589 (597)
T 2xpi_A 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLL-----STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDL 589 (597)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHH
Confidence 679999999999999999999999999998 45588999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 048394 469 LIKTYI 474 (485)
Q Consensus 469 l~~~~~ 474 (485)
++.+|.
T Consensus 590 l~~~~~ 595 (597)
T 2xpi_A 590 LKRALE 595 (597)
T ss_dssp HHHTTC
T ss_pred HHHHHh
Confidence 998874
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=4.2e-33 Score=260.37 Aligned_cols=383 Identities=12% Similarity=0.013 Sum_probs=344.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcc-cCCCHhHHHHHHHHHHhcCcH
Q 048394 82 CVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE-YAKNRYTYGALLNCYCKELMT 160 (485)
Q Consensus 82 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~ 160 (485)
+...+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|..+++...+ .+.+..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 3566788999999999999988765 34555667777788999999999999999888 666788999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 048394 161 ERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEM 240 (485)
Q Consensus 161 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 240 (485)
++|...|+++....+. +..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++
T Consensus 84 ~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999886533 45679999999999999999999999999863 234556777888899999999999999999
Q ss_pred HhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhh
Q 048394 241 CNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTS 320 (485)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 320 (485)
.+ ..+.+..++..+..++...|++++|...|+++.+..|.+...|..+...+...|++++|...+++.....|.+..+
T Consensus 162 l~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 239 (388)
T 1w3b_A 162 IE--TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239 (388)
T ss_dssp HH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHH
Confidence 98 5667788999999999999999999999999999999899999999999999999999999999999988889999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHH
Q 048394 321 YLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYY 400 (485)
Q Consensus 321 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 400 (485)
+..++..+...|++++|.+.|+++.+..+. +..+|..+..++.+.|++++|...|+++.+.. +.+..++..+...+
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC---PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cccHHHHHHHHHHH
Confidence 999999999999999999999999987655 67889999999999999999999999999874 56778899999999
Q ss_pred HhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCC
Q 048394 401 LRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGK 478 (485)
Q Consensus 401 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 478 (485)
.+.|++++|...++++.+. .+.+..++..+...+.+.|++++|...++++.+..|.++.+|..++.++...|+
T Consensus 316 ~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEV-----FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTS-----CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999886 456688999999999999999999999999999999999999999999988764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=5e-31 Score=246.31 Aligned_cols=355 Identities=14% Similarity=0.060 Sum_probs=321.7
Q ss_pred HHHHHHhhCCHHHHHHHHHhhcc-cCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCc
Q 048394 117 YLDLTAKTNGIAAAEKYFNGLSE-YAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQP 195 (485)
Q Consensus 117 l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 195 (485)
+...+.+.|++++|.+.++.+.+ .+.+...+..+...+.+.|++++|...++........ +..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~-~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCH
Confidence 34567789999999999999888 4445677888888899999999999999999886543 778999999999999999
Q ss_pred ccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHH
Q 048394 196 EKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKK 275 (485)
Q Consensus 196 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 275 (485)
++|++.|+++.+.. +.+..+|..+..++.+.|++++|.+.|+.+.+ ..|.+...+..+...+...|++++|...|++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQ--YNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH--HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999998863 33456789999999999999999999999998 4566677788899999999999999999999
Q ss_pred HHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHh
Q 048394 276 LEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRL 355 (485)
Q Consensus 276 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 355 (485)
+....|.+..+|..+...+...|++++|...|+++....|.+...+..+...+...|++++|...+++..+..+. +..+
T Consensus 161 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 239 (388)
T 1w3b_A 161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVV 239 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHH
Confidence 999888899999999999999999999999999999998888999999999999999999999999999887654 6888
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHH
Q 048394 356 ADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTF 435 (485)
Q Consensus 356 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 435 (485)
+..+..+|...|++++|...|+++.+.+ +.+..+|..+...+.+.|++++|...++++.+. .+.+..++..+
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l 311 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ---PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-----CPTHADSLNNL 311 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC---SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CcccHHHHHHH
Confidence 9999999999999999999999999874 345678999999999999999999999999998 56788999999
Q ss_pred HHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcchhc
Q 048394 436 FRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDMR 484 (485)
Q Consensus 436 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 484 (485)
...+.+.|++++|...++++.+..|.+..++..++.+|.+.|++++|++
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999874
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=5.4e-31 Score=249.95 Aligned_cols=203 Identities=10% Similarity=0.104 Sum_probs=163.6
Q ss_pred HHHHHHHHHHhCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCC---------HHH
Q 048394 60 VTGALNAYIMEGKTVRKD-MLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNG---------IAA 129 (485)
Q Consensus 60 ~~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~ 129 (485)
.+.+.+.+.+.+....+. .+..+|.+|++.|++++|+++|++|.+.|++||..+|+.+|.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 344555666666665544 5788899999999999999999999999999999999999999987654 678
Q ss_pred HHHHHHhhcc--cCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHH
Q 048394 130 AEKYFNGLSE--YAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQ 207 (485)
Q Consensus 130 a~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 207 (485)
|.++|++|.. ..||..+|++||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 8888888877 77888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhc
Q 048394 208 RNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKA 263 (485)
Q Consensus 208 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 263 (485)
.|+.||..||++||.+|++.|++++|.+++++|.+ .+..|+..||+.++..|+..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888 78888888888888887654
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=4.3e-30 Score=243.74 Aligned_cols=204 Identities=16% Similarity=0.192 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhhCCHHHHHHHHHhhcc--cCCCHhHHHHHHHHHHhcC---------cH
Q 048394 93 RHALEVIEWMESRKMHFSYT-DFAVYLDLTAKTNGIAAAEKYFNGLSE--YAKNRYTYGALLNCYCKEL---------MT 160 (485)
Q Consensus 93 ~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~li~~~~~~~---------~~ 160 (485)
..+..+.+.+.+.+....+. .++.+|++|++.|++++|.++|++|.+ ..||..+||+||.+|++.+ .+
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 34556667777777665543 588899999999999999999999998 8999999999999998765 47
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 048394 161 ERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEM 240 (485)
Q Consensus 161 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 240 (485)
+.|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHhc
Q 048394 241 CNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEE-MKPRDRKAYHFLISLYCNT 297 (485)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 297 (485)
.+ .|..||..+|++|+.+|++.|++++|.++|++|.+ +..|+..||+.++..|...
T Consensus 167 ~~-~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VE-SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hh-cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 98 89999999999999999999999999999999999 7778999999999998764
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.4e-27 Score=229.93 Aligned_cols=383 Identities=10% Similarity=-0.042 Sum_probs=287.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcc-cCCCHhHHHHHHHHH
Q 048394 76 KDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE-YAKNRYTYGALLNCY 154 (485)
Q Consensus 76 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~ 154 (485)
...+......+.+.|++++|+..|+++.+.+ |+...|..+..++.+.|++++|.+.|+++.+ .+.+..+|..+..++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 3456677788889999999999999998876 6888898899999999999999999999888 445567889999999
Q ss_pred HhcCcHHHHHHHHHHHHhCCCCCC--------------------------------------------------------
Q 048394 155 CKELMTERALALFEKMDELKFLGN-------------------------------------------------------- 178 (485)
Q Consensus 155 ~~~~~~~~A~~~~~~m~~~~~~p~-------------------------------------------------------- 178 (485)
.+.|++++|...|+++...+...+
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 999999999999998877653111
Q ss_pred ----------------------hhhHHHHHHHHHh---CCCcccHHHHHHHHHH-----cCC--------CccHHHHHHH
Q 048394 179 ----------------------TVAFNNLSTMYLR---LGQPEKVRPLVNQMKQ-----RNI--------SLDNLTYIVW 220 (485)
Q Consensus 179 ----------------------~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~~~--------~p~~~~~~~l 220 (485)
...+......+.. .|++++|...|+++.+ ..- +.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1122222222332 6778888888888776 211 2234566677
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCh
Q 048394 221 MQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNL 300 (485)
Q Consensus 221 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 300 (485)
...+...|++++|...++.+.+ ..+. ...+..++.+|...|++++|...++++....|.+..++..+...+...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~--~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIE--LFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHH--HCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHh--hCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 7778888888888888888777 2222 777777888888888888888888888777777777888888888888888
Q ss_pred hhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 048394 301 DAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAK 380 (485)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 380 (485)
++|...++++....+.+...+..+...+...|++++|...++.+.+..+. +..++..+...+...|++++|...++++.
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88888888887777777777778888888888888888888887776444 56677778888888888888888888877
Q ss_pred hcccccCCc----hhHHHHHHHHHHh---cccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHH
Q 048394 381 KRANASARF----FKSRESFMIYYLR---SRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCK 453 (485)
Q Consensus 381 ~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 453 (485)
+.... .++ ...+..+...+.. .|++++|...++++... .+.+..++..+...+.+.|++++|...++
T Consensus 400 ~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 400 ELENK-LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL-----DPRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHT-SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred Hhhhc-cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 65320 111 2367777777888 88888888888888776 34456777777788888888888888888
Q ss_pred HHhhcCCCCHHHHHHHH
Q 048394 454 VLKSLNCLDFSAYSLLI 470 (485)
Q Consensus 454 ~~~~~~~~~~~~~~~l~ 470 (485)
++.+..|.++..+..+.
T Consensus 474 ~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 474 ESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHCSSHHHHHHHHH
T ss_pred HHHHhccccHHHHHHHH
Confidence 88888887776666553
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.5e-27 Score=226.47 Aligned_cols=365 Identities=12% Similarity=0.040 Sum_probs=314.5
Q ss_pred hhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 048394 111 YTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYL 190 (485)
Q Consensus 111 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 190 (485)
...+......+.+.|++++|...|+++....|+..+|..+..++.+.|++++|...|+++.+.++. +..+|..+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHH
Confidence 345667778889999999999999999997789999999999999999999999999999987644 6678999999999
Q ss_pred hCCCcccHHHHHHHHHHcCCCc----------------------------------------------------------
Q 048394 191 RLGQPEKVRPLVNQMKQRNISL---------------------------------------------------------- 212 (485)
Q Consensus 191 ~~g~~~~a~~~~~~~~~~~~~p---------------------------------------------------------- 212 (485)
+.|++++|...|+++...+...
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 9999999999999987754210
Q ss_pred --------------------cHHHHHHHHHHHHh---cCCHhHHHHHHHHHHh-----ccCC-------CCcHHHHHHHH
Q 048394 213 --------------------DNLTYIVWMQSYSH---LNDIDGVERVFYEMCN-----ECED-------KCRWTTYSNLA 257 (485)
Q Consensus 213 --------------------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~~-------~~~~~~~~~l~ 257 (485)
+...+......+.. .|++++|...++.+.+ .... +.+..++..++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 12223333333333 8999999999999877 2112 34567788899
Q ss_pred HHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHH
Q 048394 258 SIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDIL 337 (485)
Q Consensus 258 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 337 (485)
.++...|++++|...++++.+..|. ...+..+..++...|++++|...++++....+.+...+..+...+...|++++|
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 9999999999999999999997776 999999999999999999999999999998888888999999999999999999
Q ss_pred HHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHH
Q 048394 338 KQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAAL 417 (485)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 417 (485)
...++.+.+..+. +...+..+...+...|++++|..+++++.+.. +.+...+..+...|...|++++|...++++.
T Consensus 324 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 324 GKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF---PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS---TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc---ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999987655 67788889999999999999999999998864 4456788889999999999999999999999
Q ss_pred HHhhhcCCCcc----HHHHHHHHHHHhh---cCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcchhc
Q 048394 418 SEAKQFHWRPM----QVTVDTFFRFFEE---EKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDMR 484 (485)
Q Consensus 418 ~~~~~~~~~~~----~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 484 (485)
...... ++ ...+..+...+.. .|++++|...++++.+..|.++.++..++.+|.+.|++++|+.
T Consensus 400 ~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 400 ELENKL---DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAIT 470 (514)
T ss_dssp HHHHTS---SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred Hhhhcc---chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHH
Confidence 875211 11 3488889999999 9999999999999999999999999999999999999999874
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=3.1e-26 Score=218.27 Aligned_cols=376 Identities=10% Similarity=-0.043 Sum_probs=239.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcc-cCCCHhHHHHHH
Q 048394 73 TVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE-YAKNRYTYGALL 151 (485)
Q Consensus 73 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li 151 (485)
+.+...+..+...+.+.|++++|+.+|+.+.+.. +.+...+..+..++...|++++|...|+++.+ .+.+..++..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 3445566666666666777777777777665543 33555666666666666777777777766666 333455666666
Q ss_pred HHHHhcCcHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 048394 152 NCYCKELMTERALALFEKMDELKFLGNT---VAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLN 228 (485)
Q Consensus 152 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 228 (485)
.+|.+.|++++|...|+++.+.+.. +. .++..++..+.. ..+..+...+...|
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSG 157 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcC
Confidence 6666667777777777666664422 22 344444333110 01122233456666
Q ss_pred CHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHH
Q 048394 229 DIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWG 308 (485)
Q Consensus 229 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 308 (485)
++++|...|+.+.+ ..+.+..++..++.+|.+.|++++|...|+++.+..|.+..++..++.+|...|++++|...++
T Consensus 158 ~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 158 DYTAAIAFLDKILE--VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 67777777766665 3455666666666667777777777777766666556666666777777777777777777777
Q ss_pred HhhhcCCCChhhHHHH------------HHHHHhcCChhHHHHHHHHHHHccCCCC----HHhHHHHHHHHHhcCcHHHH
Q 048394 309 ILKSTFPPTNTSYLVL------------LQALAKLNAIDILKQCFEEWESRCSSYD----MRLADVIIRAYLQKDMYEEA 372 (485)
Q Consensus 309 ~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A 372 (485)
++....+.+...+..+ +..+...|++++|...|+.+.+..+. + ...+..+..++.+.|++++|
T Consensus 236 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 236 ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHH
Confidence 6666655554444443 67777788888888888877765433 2 34667777778888888888
Q ss_pred HHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHH------------HHh
Q 048394 373 ALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFR------------FFE 440 (485)
Q Consensus 373 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~------------~~~ 440 (485)
...++++.+.. +.+...|..+..+|...|++++|...++++++. .+.+...+..+.. .|.
T Consensus 315 ~~~~~~a~~~~---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~~~~~~~~y~ 386 (450)
T 2y4t_A 315 IRVCSEVLQME---PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH-----NENDQQIREGLEKAQRLLKQSQKRDYYK 386 (450)
T ss_dssp HHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----SSSCHHHHHHHHHHHHHHHHHHSCCSGG
T ss_pred HHHHHHHHHhC---cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CcchHHHHHHHHHHHHHhhcccchhHHH
Confidence 88888877653 345677777778888888888888888888775 2334455555542 233
Q ss_pred hcC-----ChhhHHHHHHH-HhhcCCC---C-------HHHHHHHHHHHHHhCCCcchhc
Q 048394 441 EEK-----DVDGAEEFCKV-LKSLNCL---D-------FSAYSLLIKTYIAAGKLASDMR 484 (485)
Q Consensus 441 ~~~-----~~~~A~~~~~~-~~~~~~~---~-------~~~~~~l~~~~~~~g~~~~A~~ 484 (485)
..| +.+++.+.+++ ..+..|. + ...+..+..+|...|+.+++.+
T Consensus 387 ~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 387 ILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp GSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred HhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 334 56777888886 5555553 2 2368889999999998877643
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=4e-26 Score=217.52 Aligned_cols=318 Identities=12% Similarity=0.007 Sum_probs=237.3
Q ss_pred HhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHH
Q 048394 144 RYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQS 223 (485)
Q Consensus 144 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 223 (485)
...+..+...+.+.|++++|+.+|+++.+.... +..+|..+..++...|++++|+..|+++.+.+ +.+..++..+..+
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 344444445555555555555555554443221 34444445555555555555555555554432 2234444445555
Q ss_pred HHhcCCHhHHHHHHHHHHhccCCCCcH---HHHH------------HHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHH
Q 048394 224 YSHLNDIDGVERVFYEMCNECEDKCRW---TTYS------------NLASIYVKAELFEKAELALKKLEEMKPRDRKAYH 288 (485)
Q Consensus 224 ~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 288 (485)
|.+.|++++|.+.|+.+.+ ..+.+. ..+. .+...+...|++++|...|+++.+..|.+..++.
T Consensus 104 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 181 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLK--SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE 181 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 5555555555555555544 222222 3332 2455688999999999999999998888999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHH---------
Q 048394 289 FLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVI--------- 359 (485)
Q Consensus 289 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------- 359 (485)
.++.+|...|++++|...++++....+.+..++..++..+...|++++|...|+++.+..+. +...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~ 260 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKL 260 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988889999999999999999999999999999887544 45555544
Q ss_pred ---HHHHHhcCcHHHHHHHHHHHHhcccccCCc-----hhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHH
Q 048394 360 ---IRAYLQKDMYEEAALIFNNAKKRANASARF-----FKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVT 431 (485)
Q Consensus 360 ---~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 431 (485)
...+...|++++|..+|+++.+. .|+ ...|..+...+.+.|++++|+..++++... .+.+...
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~p~~~~~ 331 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKT----EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-----EPDNVNA 331 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH----CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CcccHHH
Confidence 78899999999999999999986 444 346788889999999999999999999987 4557899
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 048394 432 VDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIA 475 (485)
Q Consensus 432 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 475 (485)
|..+..+|...|++++|...++++.+..|.++.++..++.+...
T Consensus 332 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 332 LKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999965443
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=1.6e-24 Score=211.36 Aligned_cols=378 Identities=11% Similarity=-0.008 Sum_probs=275.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcc-cCCCHhHHHHHHHHHH
Q 048394 77 DMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE-YAKNRYTYGALLNCYC 155 (485)
Q Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~ 155 (485)
..+......+.+.|++++|++.|+++.+.. +.+...+..+..++.+.|++++|.+.|+++.+ .+.+..++..+..++.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 344445555556666666666666655543 23455555555566666666666666666555 3334555555556666
Q ss_pred hcCcHHHHHHHHH------------------------------HHHhCC------CCCChh-------------------
Q 048394 156 KELMTERALALFE------------------------------KMDELK------FLGNTV------------------- 180 (485)
Q Consensus 156 ~~~~~~~A~~~~~------------------------------~m~~~~------~~p~~~------------------- 180 (485)
..|++++|...|+ ++.... ..|+..
T Consensus 105 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred HcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 6666666665554 332210 001111
Q ss_pred -----------hHHHHHHHHHh--------CCCcccHHHHHHHHHHcCCCcc--------HHHHHHHHHHHHhcCCHhHH
Q 048394 181 -----------AFNNLSTMYLR--------LGQPEKVRPLVNQMKQRNISLD--------NLTYIVWMQSYSHLNDIDGV 233 (485)
Q Consensus 181 -----------~~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~p~--------~~~~~~l~~~~~~~~~~~~a 233 (485)
....+...+.. .|++++|..+|+++.+.. |+ ..++..+...+...|++++|
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 11112212111 147889999999988753 33 23566677788899999999
Q ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhc
Q 048394 234 ERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKST 313 (485)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 313 (485)
...++.+.+ ..|+...+..+..++...|++++|...++++.+..|.+..++..+...+...|++++|...++++...
T Consensus 263 ~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 263 QVLLQESIN---LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HHHHHHHHH---HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh---cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 999999998 33448888899999999999999999999999988889999999999999999999999999999998
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCC----c
Q 048394 314 FPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASAR----F 389 (485)
Q Consensus 314 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p----~ 389 (485)
.+.+...+..+...+...|++++|.+.++++.+..+. +...+..+...+...|++++|...|+++.+.... .+ .
T Consensus 340 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~ 417 (537)
T 3fp2_A 340 NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV-QEKIHVG 417 (537)
T ss_dssp CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-CSSCSST
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc-chhhHHH
Confidence 8888889999999999999999999999999988654 6778888999999999999999999998875320 11 1
Q ss_pred hhHHHHHHHHHHhc----------ccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcC
Q 048394 390 FKSRESFMIYYLRS----------RQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLN 459 (485)
Q Consensus 390 ~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 459 (485)
...+......+... |++++|...++++.+. .+.+...+..+...+.+.|++++|.+.++++.+..
T Consensus 418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL-----DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 12233445667777 9999999999999997 45667889999999999999999999999999999
Q ss_pred CCCHHHHH
Q 048394 460 CLDFSAYS 467 (485)
Q Consensus 460 ~~~~~~~~ 467 (485)
|.+.....
T Consensus 493 ~~~~~~~~ 500 (537)
T 3fp2_A 493 RTMDEKLQ 500 (537)
T ss_dssp --CHHHHH
T ss_pred CCcHHHHH
Confidence 87665544
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=1.7e-24 Score=211.07 Aligned_cols=366 Identities=12% Similarity=0.055 Sum_probs=299.4
Q ss_pred hhhHHHHHHHHHhhCCHHHHHHHHHhhcc-cCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 048394 111 YTDFAVYLDLTAKTNGIAAAEKYFNGLSE-YAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMY 189 (485)
Q Consensus 111 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 189 (485)
...+..+...+.+.|++++|.+.|+++.. .+.+..+|..+..++.+.|++++|++.|+++.+.+.. +..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHH
Confidence 45677788899999999999999999998 5567889999999999999999999999999987644 678899999999
Q ss_pred HhCCCcccHHHHHHHHHHcCC------------------------------------CccHH------------------
Q 048394 190 LRLGQPEKVRPLVNQMKQRNI------------------------------------SLDNL------------------ 215 (485)
Q Consensus 190 ~~~g~~~~a~~~~~~~~~~~~------------------------------------~p~~~------------------ 215 (485)
...|++++|...|+.+....- .|+..
T Consensus 104 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 999999999999964321100 01111
Q ss_pred ------------HHHHHHHHHH--------hcCCHhHHHHHHHHHHhccCCCCcH-------HHHHHHHHHHHhcccHHH
Q 048394 216 ------------TYIVWMQSYS--------HLNDIDGVERVFYEMCNECEDKCRW-------TTYSNLASIYVKAELFEK 268 (485)
Q Consensus 216 ------------~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~ 268 (485)
....+...+. ..|++++|..+++.+.+ ..+.+. .++..+...+...|++++
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLS--ANTVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH--HCCCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 1111111111 12478899999999987 344443 356777788889999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcc
Q 048394 269 AELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRC 348 (485)
Q Consensus 269 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 348 (485)
|...++++.+..|. ..++..+...+...|++++|...++++....+.+..++..+...+...|++++|.+.++++.+..
T Consensus 262 A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 262 AQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 99999999997775 89999999999999999999999999999988889999999999999999999999999999876
Q ss_pred CCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCC-Cc
Q 048394 349 SSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHW-RP 427 (485)
Q Consensus 349 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~ 427 (485)
+. +...+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+....... ..
T Consensus 341 ~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 416 (537)
T 3fp2_A 341 PE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF---PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416 (537)
T ss_dssp TT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence 55 67888899999999999999999999999874 445678888999999999999999999999987633211 11
Q ss_pred cHHHHHHHHHHHhhc----------CChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcchhc
Q 048394 428 MQVTVDTFFRFFEEE----------KDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDMR 484 (485)
Q Consensus 428 ~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 484 (485)
....+......+... |++++|...++++.+..|.+..++..++.+|.+.|++++|++
T Consensus 417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 122344455677777 999999999999999999999999999999999999999874
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.95 E-value=1.2e-23 Score=193.87 Aligned_cols=330 Identities=11% Similarity=0.005 Sum_probs=226.9
Q ss_pred hhHHHHHHHHHhhCCHHHHHHHHHhhcc-cCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 048394 112 TDFAVYLDLTAKTNGIAAAEKYFNGLSE-YAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYL 190 (485)
Q Consensus 112 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 190 (485)
..+..+...+...|++++|...|+++.+ .+.+..++..+...+...|++++|...|+++.+.... +...|..+...+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHHH
Confidence 3455555566666666666666666655 3334556666666666666666666666666554322 4455555666666
Q ss_pred hCCCcccHHHHHHHHHHcCCCc----cHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccH
Q 048394 191 RLGQPEKVRPLVNQMKQRNISL----DNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELF 266 (485)
Q Consensus 191 ~~g~~~~a~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 266 (485)
..|++++|...|+++.+. .| +...+..+...+. ...+..++..+...|++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~------------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE------------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHTTCH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH------------------------HHHHHHHHHHHHHccCH
Confidence 666666666666666553 23 2222222211000 00111235666777777
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048394 267 EKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWES 346 (485)
Q Consensus 267 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 346 (485)
++|...++++.+..|.+...+..+...+...|++++|...++++....+.+...+..+...+...|++++|...++...+
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777777777766667777777777777777777777777777777666777777777777777777777777777776
Q ss_pred ccCCCCHHhHH------------HHHHHHHhcCcHHHHHHHHHHHHhcccccCCch-----hHHHHHHHHHHhcccHHHH
Q 048394 347 RCSSYDMRLAD------------VIIRAYLQKDMYEEAALIFNNAKKRANASARFF-----KSRESFMIYYLRSRQLDLA 409 (485)
Q Consensus 347 ~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A 409 (485)
..+. +...+. .+...+...|++++|...++++.+.. |+. ..+..+...+...|++++|
T Consensus 217 ~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 217 LDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE----PSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 5433 333332 23667889999999999999998863 332 2244577888999999999
Q ss_pred HHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCC
Q 048394 410 LNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGK 478 (485)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 478 (485)
...++++.+. .+.+..++..+...+...|++++|...++++.+..|.+..++..+..++...++
T Consensus 292 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 292 IRICSEVLQM-----EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 9999999997 455788999999999999999999999999999999999999999998876543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=3e-22 Score=184.47 Aligned_cols=331 Identities=12% Similarity=-0.039 Sum_probs=240.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcc-cCCCHhHHHHHHHH
Q 048394 75 RKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE-YAKNRYTYGALLNC 153 (485)
Q Consensus 75 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~ 153 (485)
+...+..+...+...|++++|+..|+.+.+.. +.+...+..+..++...|++++|...|+++.+ .+.+...|..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 35677888899999999999999999998875 35678888999999999999999999999988 44477899999999
Q ss_pred HHhcCcHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHh
Q 048394 154 YCKELMTERALALFEKMDELKFL--GNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDID 231 (485)
Q Consensus 154 ~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 231 (485)
+...|++++|...|+++.+.... .+...+..+...+. ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 99999999999999999986530 13344444422111 112333455566677777
Q ss_pred HHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhh
Q 048394 232 GVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILK 311 (485)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 311 (485)
+|.+.++.+.+ ..+.+...+..+..++...|++++|...++++.+..|.+..++..+...+...|++++|...+++..
T Consensus 138 ~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 138 AAITFLDKILE--VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777666 4455666666677777777777777777777776666667777777777777777777777777776
Q ss_pred hcCCCChhhHH------------HHHHHHHhcCChhHHHHHHHHHHHccCCCCH----HhHHHHHHHHHhcCcHHHHHHH
Q 048394 312 STFPPTNTSYL------------VLLQALAKLNAIDILKQCFEEWESRCSSYDM----RLADVIIRAYLQKDMYEEAALI 375 (485)
Q Consensus 312 ~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~ 375 (485)
+..+.+...+. .+...+.+.|++++|...++.+.+..+. +. ..+..+..++...|++++|...
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 216 KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 66665444332 2366677888888888888888776544 33 2344577788888888888888
Q ss_pred HHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHh
Q 048394 376 FNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFE 440 (485)
Q Consensus 376 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 440 (485)
+++..+.. +.+...+..+...|...|++++|...|+++.+. .+.+...+..+..+..
T Consensus 295 ~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-----~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 295 CSEVLQME---PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH-----NENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CTTCHHHHHHHHHHHH
T ss_pred HHHHHHhC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCChHHHHHHHHHHH
Confidence 88888763 446677888888888888888898888888876 3334555555554443
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.93 E-value=1.3e-22 Score=184.61 Aligned_cols=294 Identities=11% Similarity=0.025 Sum_probs=226.4
Q ss_pred CChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHH
Q 048394 177 GNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNL 256 (485)
Q Consensus 177 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 256 (485)
.+...+..+...+...|++++|.++|+++.+.. +.+...+..++.++...|++++|..+++++.+ ..+.+...+..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVD--LYPSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHH--hCcCCHHHHHHH
Confidence 355566667777777777777777777776653 23444555566777777788888888777776 455566677777
Q ss_pred HHHHHhcc-cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChh
Q 048394 257 ASIYVKAE-LFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAID 335 (485)
Q Consensus 257 ~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 335 (485)
...+...| ++++|...|+++.+..|.+...|..+...+...|++++|...++++....+.+...+..+...+...|+++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 77788888 78888888888877777777788888888888888888888888887777776677777888888888888
Q ss_pred HHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhccc------ccCCchhHHHHHHHHHHhcccHHHH
Q 048394 336 ILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRAN------ASARFFKSRESFMIYYLRSRQLDLA 409 (485)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~p~~~~~~~l~~~~~~~g~~~~A 409 (485)
+|.+.++++.+..+. +...+..+...+...|++++|...++++.+... .......++..+...|...|++++|
T Consensus 177 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 888888888776544 677788888888888888888888888776421 0022346788888899999999999
Q ss_pred HHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHH-HhCCC
Q 048394 410 LNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYI-AAGKL 479 (485)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~ 479 (485)
...++++.+. .+.+...+..+...+...|++++|.+.++++.+..|.++.++..++.++. ..|+.
T Consensus 256 ~~~~~~a~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVL-----IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHH-----STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhh-----CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 9999999987 44567888889999999999999999999999999999999999999884 45544
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.91 E-value=3.8e-22 Score=184.62 Aligned_cols=283 Identities=13% Similarity=-0.018 Sum_probs=210.2
Q ss_pred CCCcccHHH-HHHHHHHcCC-Cc--cHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHH
Q 048394 192 LGQPEKVRP-LVNQMKQRNI-SL--DNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFE 267 (485)
Q Consensus 192 ~g~~~~a~~-~~~~~~~~~~-~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 267 (485)
.|++++|.+ .|++...... .| +...+..+...+.+.|++++|...|+.+.+ ..+.+..++..++.+|...|+++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ--QDPKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHH
Confidence 456666666 5554433210 01 234455666667777777777777777766 45556666777777777777777
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHH---------------HHHHHHhcC
Q 048394 268 KAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLV---------------LLQALAKLN 332 (485)
Q Consensus 268 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~ 332 (485)
+|...++++.+..|.+..++..+...+...|++++|...++++....+.+...+.. .+..+...|
T Consensus 116 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 77777777777666677777777777777777777777777777666553333321 133334889
Q ss_pred ChhHHHHHHHHHHHccCCC-CHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHH
Q 048394 333 AIDILKQCFEEWESRCSSY-DMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALN 411 (485)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 411 (485)
++++|...++++.+..+.. +..++..+...|...|++++|...|+++.+.. +.+...|..+...+...|++++|+.
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR---PNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999998875442 57888999999999999999999999998874 4456788899999999999999999
Q ss_pred HHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCC-----------HHHHHHHHHHHHHhCCCc
Q 048394 412 EMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLD-----------FSAYSLLIKTYIAAGKLA 480 (485)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~ 480 (485)
.+++++.. .+.+...+..+..++.+.|++++|...++++.+..|.+ ..+|..++.+|...|+++
T Consensus 273 ~~~~al~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 273 AYRRALEL-----QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp HHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHh-----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence 99999987 45667889999999999999999999999999988776 889999999999999999
Q ss_pred chhc
Q 048394 481 SDMR 484 (485)
Q Consensus 481 ~A~~ 484 (485)
+|.+
T Consensus 348 ~A~~ 351 (368)
T 1fch_A 348 AYGA 351 (368)
T ss_dssp GHHH
T ss_pred hHHH
Confidence 9863
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.91 E-value=5e-21 Score=174.14 Aligned_cols=294 Identities=10% Similarity=-0.015 Sum_probs=213.1
Q ss_pred CCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHH
Q 048394 141 AKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVW 220 (485)
Q Consensus 141 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 220 (485)
+.+...+..+...+...|++++|.++|+++...... +...+..++..+...|++++|..+++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 345556666666666777777777777777665433 44556666666777777777777777776642 2345566667
Q ss_pred HHHHHhcC-CHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC
Q 048394 221 MQSYSHLN-DIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSN 299 (485)
Q Consensus 221 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (485)
...+...| ++++|.+.|+.+.+ ..+.+...+..++.++...|++++|...++++.+..|.+...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATT--LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHT--TCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh
Confidence 77777777 77777777777776 4455566777778888888888888888888777767677777778888888888
Q ss_pred hhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccC--------CCCHHhHHHHHHHHHhcCcHHH
Q 048394 300 LDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCS--------SYDMRLADVIIRAYLQKDMYEE 371 (485)
Q Consensus 300 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~ 371 (485)
+++|...++++....+.+...+..+...+...|++++|...++++.+... .....++..+...|...|++++
T Consensus 175 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 88888888888777777777788888888888888888888887766431 2245678888888888899999
Q ss_pred HHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH-hhcCChh
Q 048394 372 AALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFF-EEEKDVD 446 (485)
Q Consensus 372 A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~ 446 (485)
|...+++..+.. +.+...+..+...|.+.|++++|...++++.+. .+.+...+..+..++ ...|+.+
T Consensus 255 A~~~~~~a~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLI---PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL-----RRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHS---TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT-----CSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhC---ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc-----CCCchHHHHHHHHHHHHHhCchh
Confidence 999888888764 445677888888888889999999999888876 344666777777766 4555543
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=7.7e-20 Score=177.53 Aligned_cols=401 Identities=9% Similarity=0.028 Sum_probs=295.7
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHH
Q 048394 72 KTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALL 151 (485)
Q Consensus 72 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li 151 (485)
.|-+...+..++. +.+.|+++.|..+|+++.+.. +-+...|..++..+.+.|++++|..+|++.....|+...|..++
T Consensus 9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~ 86 (530)
T 2ooe_A 9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYL 86 (530)
T ss_dssp CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 3557777888887 478899999999999998875 45677889999999999999999999999999668888888877
Q ss_pred HHH-HhcCcHHHHHH----HHHHHHh-CCCCC-ChhhHHHHHHHHHh---------CCCcccHHHHHHHHHHcCCCccHH
Q 048394 152 NCY-CKELMTERALA----LFEKMDE-LKFLG-NTVAFNNLSTMYLR---------LGQPEKVRPLVNQMKQRNISLDNL 215 (485)
Q Consensus 152 ~~~-~~~~~~~~A~~----~~~~m~~-~~~~p-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~p~~~ 215 (485)
... ...|+.++|.+ +|++... .|..| +...|...+....+ .|++++|..+|++..+....+...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 533 34577666654 7776654 24433 45677777776554 688999999999998731111123
Q ss_pred HHHHHHHHH-------------HhcCCHhHHHHHHHHHH------hcc--CCCCc--------HHHHHHHHHHHHhc---
Q 048394 216 TYIVWMQSY-------------SHLNDIDGVERVFYEMC------NEC--EDKCR--------WTTYSNLASIYVKA--- 263 (485)
Q Consensus 216 ~~~~l~~~~-------------~~~~~~~~a~~~~~~~~------~~~--~~~~~--------~~~~~~l~~~~~~~--- 263 (485)
.|....... .+.+++..|..++..+. +.. ..+|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 343322211 13456777777776532 200 12443 23444444332221
Q ss_pred -cc----HHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-------cCChh-------hHHHHHHHhhh-cCCCChhhHHH
Q 048394 264 -EL----FEKAELALKKLEEMKPRDRKAYHFLISLYCN-------TSNLD-------AVNRVWGILKS-TFPPTNTSYLV 323 (485)
Q Consensus 264 -~~----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~-~~~~~~~~~~~ 323 (485)
++ .+.+..+|+++....|.++..|..++..+.. .|+++ +|..++++... ..|.+...+..
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 22 2477889999998888899999999998886 78887 89999999987 45558899999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHccCCCC-HHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHH-HH
Q 048394 324 LLQALAKLNAIDILKQCFEEWESRCSSYD-MRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIY-YL 401 (485)
Q Consensus 324 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~-~~ 401 (485)
++..+.+.|++++|.++|+.+.+..+. + ...|..++..+.+.|++++|..+|++..+.. +.+...|...... +.
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~---~~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT---TCCTHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc---CCchHHHHHHHHHHHH
Confidence 999999999999999999999986433 3 3588889998999999999999999998763 2223333322222 33
Q ss_pred hcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCH----HHHHHHHHHHHHhC
Q 048394 402 RSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDF----SAYSLLIKTYIAAG 477 (485)
Q Consensus 402 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 477 (485)
..|+.++|..+|++.++.. +.+...|..++..+.+.|+.++|..+|+++.+..|.++ ..|...+......|
T Consensus 403 ~~~~~~~A~~~~e~al~~~-----p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKY-----GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HcCChhHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 6899999999999999873 45688999999999999999999999999999766444 48888899988899
Q ss_pred CCcchh
Q 048394 478 KLASDM 483 (485)
Q Consensus 478 ~~~~A~ 483 (485)
+.+.+.
T Consensus 478 ~~~~~~ 483 (530)
T 2ooe_A 478 DLASIL 483 (530)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 887764
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.90 E-value=3.1e-21 Score=178.49 Aligned_cols=271 Identities=13% Similarity=-0.019 Sum_probs=185.4
Q ss_pred hhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHH
Q 048394 180 VAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASI 259 (485)
Q Consensus 180 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 259 (485)
..+..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|...++.+.+ ..+.+..++..++.+
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~ 141 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLE--LKPDNQTALMALAVS 141 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHh--cCCCCHHHHHHHHHH
Confidence 344455555555555555555555555442 23444555555555555555555555555555 234455555555666
Q ss_pred HHhcccHHHHHHHHHHHHhcCCCChHHHHH---------------HHHHHHhcCChhhHHHHHHHhhhcCCC--ChhhHH
Q 048394 260 YVKAELFEKAELALKKLEEMKPRDRKAYHF---------------LISLYCNTSNLDAVNRVWGILKSTFPP--TNTSYL 322 (485)
Q Consensus 260 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~ 322 (485)
|...|++++|...++++....|.+...+.. .+..+...|++++|...++++....+. +..++.
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 221 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 221 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHH
Confidence 666666666666666655544433333321 133333788888888888888887777 678888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHh
Q 048394 323 VLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLR 402 (485)
Q Consensus 323 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 402 (485)
.+...+...|++++|...++++.+..+. +..++..+...+...|++++|...|+++.+.. +.+...+..+...|.+
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ---PGYIRSRYNLGISCIN 297 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHH
Confidence 8888888888888888888888877544 67788888999999999999999999988764 4456778888889999
Q ss_pred cccHHHHHHHHHHHHHHhhhcC------CCccHHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 048394 403 SRQLDLALNEMEAALSEAKQFH------WRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKS 457 (485)
Q Consensus 403 ~g~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 457 (485)
.|++++|...|+++....+... .+....+|..+..++...|++++|..++++.++
T Consensus 298 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 298 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 9999999999999988752110 011267899999999999999999988875443
No 20
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.90 E-value=6.2e-20 Score=175.82 Aligned_cols=376 Identities=14% Similarity=-0.010 Sum_probs=252.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC-----C---CCCChhhHHHHHHHHHhhCCHHHHHHHHHhhccc----
Q 048394 73 TVRKDMLEYCVRSLRKFGRYRHALEVIEWMESR-----K---MHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEY---- 140 (485)
Q Consensus 73 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 140 (485)
......|+.+...+...|++++|++.|++..+. + -+....+|+.+..+|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344667888999999999999999999987432 1 1223567889999999999999999999887651
Q ss_pred ----C-CCHhHHHHHHHHHHh--cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHH---HHhCCCcccHHHHHHHHHHcCC
Q 048394 141 ----A-KNRYTYGALLNCYCK--ELMTERALALFEKMDELKFLGNTVAFNNLSTM---YLRLGQPEKVRPLVNQMKQRNI 210 (485)
Q Consensus 141 ----~-~~~~~~~~li~~~~~--~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~ 210 (485)
. ....++..+..++.+ .+++++|+..|++..+..+. +...+..+..+ +...++.++|++.+++..+..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 1 124566666656555 45799999999999886533 44455555444 445688899999999988753
Q ss_pred CccHHHHHHHHHHHH----hcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHH
Q 048394 211 SLDNLTYIVWMQSYS----HLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKA 286 (485)
Q Consensus 211 ~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 286 (485)
+.+..++..+...+. ..+++++|.+.+++... ..+.+..++..+...|...|++++|...++++.+..|.+..+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE--KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH--hCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHH
Confidence 334555555554444 35678899999999887 577788889999999999999999999999999988989999
Q ss_pred HHHHHHHHHhc-------------------CChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 048394 287 YHFLISLYCNT-------------------SNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESR 347 (485)
Q Consensus 287 ~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 347 (485)
+..+..+|... +..+.|...+++.....+.+..++..+...+...|++++|.+.|++..+.
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 98888776532 23456777777777777777778888888888888888888888888776
Q ss_pred cCCCCHH--hHHHHHH-HHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcC
Q 048394 348 CSSYDMR--LADVIIR-AYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFH 424 (485)
Q Consensus 348 ~~~~~~~--~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 424 (485)
.+.+... .+..+.. .+...|++++|+..|++..+. .|+..... +....+..++++.+..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i----~~~~~~~~---------~~~~~l~~~~~~~l~~----- 425 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI----NQKSREKE---------KMKDKLQKIAKMRLSK----- 425 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS----CCCCHHHH---------HHHHHHHHHHHHHHHH-----
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CcccHHHH---------HHHHHHHHHHHHHHHh-----
Confidence 5443221 2222322 234678888888888888765 44433221 2234445566666665
Q ss_pred CCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHH
Q 048394 425 WRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLI 470 (485)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 470 (485)
.+.+..+|..+..++...|++++|.+.|+++++.+|.++.++..++
T Consensus 426 ~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 426 NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp CC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 4556778888888888888888999999888888887777666554
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=3.5e-18 Score=164.15 Aligned_cols=370 Identities=9% Similarity=-0.035 Sum_probs=299.2
Q ss_pred CCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----hCCHHHHHHHHHhhcccCCCH
Q 048394 73 TVRKDMLEYCVRSLRK----FGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAK----TNGIAAAEKYFNGLSEYAKNR 144 (485)
Q Consensus 73 ~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~ 144 (485)
..++..+..+...+.. .+++++|+..|+...+.| +...+..+...|.. .+++++|.++|++..+. .+.
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~ 111 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-GLP 111 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCH
Confidence 3466777777777877 899999999999988775 56677778888888 88999999999988773 366
Q ss_pred hHHHHHHHHHHh----cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----CCCcccHHHHHHHHHHcCCCccHHH
Q 048394 145 YTYGALLNCYCK----ELMTERALALFEKMDELKFLGNTVAFNNLSTMYLR----LGQPEKVRPLVNQMKQRNISLDNLT 216 (485)
Q Consensus 145 ~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~ 216 (485)
..+..|...|.. .+++++|+..|++..+.| +...+..+...|.. .+++++|++.|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 778888888888 789999999999998876 56678888888877 788999999999998875 5677
Q ss_pred HHHHHHHHHh----cCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh----cccHHHHHHHHHHHHhcCCCChHHHH
Q 048394 217 YIVWMQSYSH----LNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVK----AELFEKAELALKKLEEMKPRDRKAYH 288 (485)
Q Consensus 217 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 288 (485)
+..+...|.. .++.++|.++|+...+ .+ +...+..+...|.. .+++++|...|++..+. .+...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSAT-SG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHH
Confidence 7778888887 8999999999999887 32 45667778888886 78999999999988764 3467777
Q ss_pred HHHHHHHh----cCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhc-----CChhHHHHHHHHHHHccCCCCHHhHHHH
Q 048394 289 FLISLYCN----TSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKL-----NAIDILKQCFEEWESRCSSYDMRLADVI 359 (485)
Q Consensus 289 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l 359 (485)
.+...|.. .+++++|...|++..+.+ +...+..+...|... ++.++|...|++..+.+ +...+..+
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l 334 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG--NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANL 334 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHH
Confidence 88888887 889999999999987654 456777788888877 89999999999988875 55677778
Q ss_pred HHHHHhcC---cHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHh----cccHHHHHHHHHHHHHHhhhcCCCccHHHH
Q 048394 360 IRAYLQKD---MYEEAALIFNNAKKRANASARFFKSRESFMIYYLR----SRQLDLALNEMEAALSEAKQFHWRPMQVTV 432 (485)
Q Consensus 360 ~~~~~~~~---~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 432 (485)
...|...| ++++|...|++..+.+ +...+..+...|.. .+++++|+.+|++..+.+ +...+
T Consensus 335 g~~y~~~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-------~~~a~ 402 (490)
T 2xm6_A 335 GAIYFRLGSEEEHKKAVEWFRKAAAKG-----EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-------LSAAQ 402 (490)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHH
T ss_pred HHHHHhCCCcccHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-------CHHHH
Confidence 88887766 8899999999988764 34567777788887 789999999999998863 46677
Q ss_pred HHHHHHHhh----cCChhhHHHHHHHHhhcCC---CCHHHHHHHHHHHHH
Q 048394 433 DTFFRFFEE----EKDVDGAEEFCKVLKSLNC---LDFSAYSLLIKTYIA 475 (485)
Q Consensus 433 ~~l~~~~~~----~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~ 475 (485)
..+...|.. .+++++|..+|+++.+.+| .++.+...++.++..
T Consensus 403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 403 VQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 778888887 8999999999999999884 366677666655443
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.89 E-value=1.2e-21 Score=181.16 Aligned_cols=261 Identities=13% Similarity=-0.032 Sum_probs=210.1
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 048394 213 DNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLIS 292 (485)
Q Consensus 213 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 292 (485)
+...+..+...+.+.|++++|...|+.+.+ ..+.+..++..++.+|...|++++|...|+++.+..|.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAIL--QDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 344577777888888888888888888887 456678888888888888888888888888888877778888888888
Q ss_pred HHHhcCChhhHHHHHHHhhhcCCCChhhH----------HHHHHHHHhcCChhHHHHHHHHHHHccCCC-CHHhHHHHHH
Q 048394 293 LYCNTSNLDAVNRVWGILKSTFPPTNTSY----------LVLLQALAKLNAIDILKQCFEEWESRCSSY-DMRLADVIIR 361 (485)
Q Consensus 293 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 361 (485)
+|...|++++|...++++....+.+...+ ..+...+...|++++|.+.++++.+..+.. +..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 88888888888888888877665533333 335788888999999999999998875442 5788888999
Q ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhh
Q 048394 362 AYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEE 441 (485)
Q Consensus 362 ~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 441 (485)
.|...|++++|...|+++.+.. +.+..+|..+...|...|++++|+..|+++++. .+.+..++..+..+|..
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR---PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI-----QPGFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCchHHHHHHHHHHHH
Confidence 9999999999999999998874 456778899999999999999999999999987 44568888999999999
Q ss_pred cCChhhHHHHHHHHhhcCCC------------CHHHHHHHHHHHHHhCCCcchh
Q 048394 442 EKDVDGAEEFCKVLKSLNCL------------DFSAYSLLIKTYIAAGKLASDM 483 (485)
Q Consensus 442 ~~~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~ 483 (485)
.|++++|...++++.+..|. +..+|..++.++...|+.+.|.
T Consensus 294 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 347 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ 347 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHH
Confidence 99999999999999987765 3678999999999999887664
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.88 E-value=5.2e-21 Score=176.77 Aligned_cols=267 Identities=10% Similarity=-0.062 Sum_probs=150.4
Q ss_pred HhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHH
Q 048394 144 RYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQS 223 (485)
Q Consensus 144 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 223 (485)
...|..+...+.+.|++++|...|+++...... +..+|..+...+...|++++|+..|+++.+.. +.+..++..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 344666666666666666666666666665433 45566666666666666666666666666542 2345556666666
Q ss_pred HHhcCCHhHHHHHHHHHHhccCCCCc----------HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC--ChHHHHHHH
Q 048394 224 YSHLNDIDGVERVFYEMCNECEDKCR----------WTTYSNLASIYVKAELFEKAELALKKLEEMKPR--DRKAYHFLI 291 (485)
Q Consensus 224 ~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~ 291 (485)
|...|++++|...++++.+ ..+.+ ...+..+...+...|++++|...++++.+..|. +..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 6666666666666666655 11111 112233456666666677777776666665554 566666666
Q ss_pred HHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHH
Q 048394 292 SLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEE 371 (485)
Q Consensus 292 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 371 (485)
..+...|++++|...++++.+..+.+..++..+..++...|++++|.+.|+++.+..+. +..++..+..+|...|++++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHH
Confidence 66666666666666666666665555666666666666666666666666666555333 45555666666666666666
Q ss_pred HHHHHHHHHhccccc---------CCchhHHHHHHHHHHhcccHHHHHHHHHH
Q 048394 372 AALIFNNAKKRANAS---------ARFFKSRESFMIYYLRSRQLDLALNEMEA 415 (485)
Q Consensus 372 A~~~~~~~~~~~~~~---------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 415 (485)
|...|+++.+..... ..+...|..+..++...|+.+.+..+.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 666666655432100 00134455555555555655555544443
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.88 E-value=2.9e-20 Score=168.84 Aligned_cols=258 Identities=13% Similarity=-0.001 Sum_probs=191.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 048394 216 TYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYC 295 (485)
Q Consensus 216 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 295 (485)
.+..+...+...|++++|..+|+.+.+ ..+.+...+..++.++...|++++|...++++.+..|.+..++..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQ--AAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 344455556666666666666666655 344455566666666666666666666666666665656666666666666
Q ss_pred hcCChhhHHHHHHHhhhcCCCChhhHHHH--------------HH-HHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHH
Q 048394 296 NTSNLDAVNRVWGILKSTFPPTNTSYLVL--------------LQ-ALAKLNAIDILKQCFEEWESRCSSYDMRLADVII 360 (485)
Q Consensus 296 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 360 (485)
..|++++|...++++....+.+...+..+ .. .+...|++++|.+.++++.+..+. +..++..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 66666666666666666555544443333 22 366778899999999998887655 778888899
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHh
Q 048394 361 RAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFE 440 (485)
Q Consensus 361 ~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 440 (485)
..|...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+.
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~ 251 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELR---PDDAQLWNKLGATLANGNRPQEALDAYNRALDI-----NPGYVRVMYNMAVSYS 251 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHH
Confidence 99999999999999999988764 445677888888999999999999999999887 4456788888999999
Q ss_pred hcCChhhHHHHHHHHhhcCCC------------CHHHHHHHHHHHHHhCCCcchhc
Q 048394 441 EEKDVDGAEEFCKVLKSLNCL------------DFSAYSLLIKTYIAAGKLASDMR 484 (485)
Q Consensus 441 ~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~ 484 (485)
..|++++|.+.++++.+..|. +..+|..++.+|.+.|++++|..
T Consensus 252 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 307 (327)
T 3cv0_A 252 NMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVEL 307 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999998887 78899999999999999988753
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=9e-19 Score=167.72 Aligned_cols=354 Identities=12% Similarity=0.003 Sum_probs=264.4
Q ss_pred CChhhHHHHHHHHHhhCCHHHHHHHHHhhcc----------cCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCC----
Q 048394 109 FSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE----------YAKNRYTYGALLNCYCKELMTERALALFEKMDELK---- 174 (485)
Q Consensus 109 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~---- 174 (485)
.....|+.+...+...|++++|++.|++..+ .+....+|+.+..+|...|++++|...+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 4456789999999999999999999988654 12235689999999999999999999999876421
Q ss_pred --CCC-ChhhHHHHHHHHHh--CCCcccHHHHHHHHHHcCCCcc-HHHHHHHHHH---HHhcCCHhHHHHHHHHHHhccC
Q 048394 175 --FLG-NTVAFNNLSTMYLR--LGQPEKVRPLVNQMKQRNISLD-NLTYIVWMQS---YSHLNDIDGVERVFYEMCNECE 245 (485)
Q Consensus 175 --~~p-~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~ 245 (485)
..+ ...++..+..++.. .+++++|++.|++..+.. |+ ...+..+..+ +...++.++|++.+++..+ .
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~--l 204 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR--L 204 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH--H
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh--c
Confidence 111 23456655555554 457899999999998853 43 4444444444 4456888899999999887 4
Q ss_pred CCCcHHHHHHHHHHHHh----cccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhH
Q 048394 246 DKCRWTTYSNLASIYVK----AELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSY 321 (485)
Q Consensus 246 ~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 321 (485)
.+.+..++..+...+.. .+++++|...+++.....|.+..++..+...|...|++++|...++++.+..|.+..++
T Consensus 205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 284 (472)
T 4g1t_A 205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284 (472)
T ss_dssp CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHH
Confidence 56677777666665554 46788999999999998898999999999999999999999999999999988888888
Q ss_pred HHHHHHHHhc-------------------CChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 048394 322 LVLLQALAKL-------------------NAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKR 382 (485)
Q Consensus 322 ~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 382 (485)
..+..+|... +..+.|...++...+..+. +..++..+...|...|++++|...|++..+.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 8887776432 3356788888888777554 6677888999999999999999999999887
Q ss_pred ccccCCchh--HHHHHHH-HHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcC
Q 048394 383 ANASARFFK--SRESFMI-YYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLN 459 (485)
Q Consensus 383 ~~~~~p~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 459 (485)
.. .|... .+..+.. .+...|++++|+..|++.+... |+...... ....+.+++++.++..
T Consensus 364 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~------~~~~~~~~---------~~~~l~~~~~~~l~~~ 426 (472)
T 4g1t_A 364 EL--TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN------QKSREKEK---------MKDKLQKIAKMRLSKN 426 (472)
T ss_dssp CC--CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC------CCCHHHHH---------HHHHHHHHHHHHHHHC
T ss_pred CC--CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------cccHHHHH---------HHHHHHHHHHHHHHhC
Confidence 43 33221 1222222 2357899999999999998853 55433322 2345667788888899
Q ss_pred CCCHHHHHHHHHHHHHhCCCcchhc
Q 048394 460 CLDFSAYSLLIKTYIAAGKLASDMR 484 (485)
Q Consensus 460 ~~~~~~~~~l~~~~~~~g~~~~A~~ 484 (485)
|.++.+|..|+.+|...|++++|+.
T Consensus 427 p~~~~~~~~LG~~~~~~g~~~~A~~ 451 (472)
T 4g1t_A 427 GADSEALHVLAFLQELNEKMQQADE 451 (472)
T ss_dssp C-CTTHHHHHHHHHHHHHHCC----
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999975
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=3.8e-17 Score=156.93 Aligned_cols=355 Identities=11% Similarity=0.015 Sum_probs=295.2
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHh----hCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHh----cCcHHHHHHH
Q 048394 95 ALEVIEWMESRKMHFSYTDFAVYLDLTAK----TNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCK----ELMTERALAL 166 (485)
Q Consensus 95 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~ 166 (485)
+++.+....+.| +...+..+...|.. .+++++|..+|++..+. .+...+..|...|.. .+++++|.+.
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 355555555554 66777777777877 89999999999998773 467788889999998 8999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHh----CCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCCHhHHHHHHH
Q 048394 167 FEKMDELKFLGNTVAFNNLSTMYLR----LGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSH----LNDIDGVERVFY 238 (485)
Q Consensus 167 ~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~ 238 (485)
|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|.+.|+
T Consensus 102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99999876 66778888888888 789999999999998876 55677778888877 789999999999
Q ss_pred HHHhccCCCCcHHHHHHHHHHHHh----cccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh----cCChhhHHHHHHHh
Q 048394 239 EMCNECEDKCRWTTYSNLASIYVK----AELFEKAELALKKLEEMKPRDRKAYHFLISLYCN----TSNLDAVNRVWGIL 310 (485)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~ 310 (485)
...+ . .+...+..+...|.. .+++++|...|++..+. .++.++..+...|.. .+++++|...|++.
T Consensus 176 ~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 249 (490)
T 2xm6_A 176 KAAE-Q---GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQS 249 (490)
T ss_dssp HHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHH-C---CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9988 3 367788889999988 89999999999998764 356788888888886 88999999999998
Q ss_pred hhcCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhc-----CcHHHHHHHHHHHHh
Q 048394 311 KSTFPPTNTSYLVLLQALAK----LNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQK-----DMYEEAALIFNNAKK 381 (485)
Q Consensus 311 ~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~ 381 (485)
.+.+ +...+..+...+.. .++.++|.+.|+...+.+ +...+..+...|... +++++|...|++..+
T Consensus 250 ~~~~--~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 250 AEQG--NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE 324 (490)
T ss_dssp HTTT--CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH
T ss_pred HHCC--CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Confidence 7754 45677778888887 899999999999998764 566777788888887 899999999999988
Q ss_pred cccccCCchhHHHHHHHHHHhcc---cHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhh----cCChhhHHHHHHH
Q 048394 382 RANASARFFKSRESFMIYYLRSR---QLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEE----EKDVDGAEEFCKV 454 (485)
Q Consensus 382 ~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~ 454 (485)
.+. ...+..+...|...| ++++|+.+|++..+. .+...+..+...|.. .+++++|..+|++
T Consensus 325 ~~~-----~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 392 (490)
T 2xm6_A 325 QGD-----ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRK 392 (490)
T ss_dssp TTC-----HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred cCC-----HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 752 245666777777655 899999999999886 456788888888888 8999999999999
Q ss_pred HhhcCCCCHHHHHHHHHHHHH----hCCCcchhc
Q 048394 455 LKSLNCLDFSAYSLLIKTYIA----AGKLASDMR 484 (485)
Q Consensus 455 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 484 (485)
+.+.+ ++.++..|+.+|.. .+++++|++
T Consensus 393 A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 424 (490)
T 2xm6_A 393 AAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWA 424 (490)
T ss_dssp HHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 99854 68899999999998 788888864
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.86 E-value=1.3e-19 Score=164.43 Aligned_cols=271 Identities=11% Similarity=-0.040 Sum_probs=177.4
Q ss_pred hHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Q 048394 181 AFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIY 260 (485)
Q Consensus 181 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (485)
.+..+...+...|++++|..+|+++.+.. +.+..++..+..++...|++++|.+.++++.+ ..+.+..++..++.+|
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSH 99 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCcCCHHHHHHHHHHH
Confidence 44455555555556666666555555542 22444555555556666666666666666555 3444555556666666
Q ss_pred HhcccHHHHHHHHHHHHhcCCCChHHHHHH--------------HH-HHHhcCChhhHHHHHHHhhhcCCCChhhHHHHH
Q 048394 261 VKAELFEKAELALKKLEEMKPRDRKAYHFL--------------IS-LYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLL 325 (485)
Q Consensus 261 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 325 (485)
...|++++|...++++....|.+...+..+ .. .+...|++++|...++++....+.+...+..+.
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 666666666666666665544444444333 22 366677777888888777777766777777778
Q ss_pred HHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhccc
Q 048394 326 QALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQ 405 (485)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 405 (485)
..+...|++++|.+.++++.+..+. +..++..+...+...|++++|...|+++.+.. +.+...+..+...|...|+
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN---PGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhcc
Confidence 8888888888888888877776543 56777778888888888888888888877763 3456677778888888888
Q ss_pred HHHHHHHHHHHHHHhhhcCCC-------ccHHHHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 048394 406 LDLALNEMEAALSEAKQFHWR-------PMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSL 458 (485)
Q Consensus 406 ~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 458 (485)
+++|...++++.......... .+...+..+..++.+.|++++|..++++..+.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 888888888888765110000 04667788888888888888888887765553
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=1.2e-17 Score=162.09 Aligned_cols=394 Identities=9% Similarity=0.024 Sum_probs=290.0
Q ss_pred CCcHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH-HhhCCHHHHHH-
Q 048394 57 GGSVTGALNAYIME--GKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLT-AKTNGIAAAEK- 132 (485)
Q Consensus 57 ~~~~~~~~~~~~~~--g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~- 132 (485)
.+.+..+...+.+. -.|.+...+...+..+.+.|+++.|..+|++..... |+...|..++... ...|+.+.|.+
T Consensus 25 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~ 102 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEK 102 (530)
T ss_dssp SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHH
Confidence 34555555444432 356678888999999999999999999999998875 6777777777543 34577776665
Q ss_pred ---HHHhhcc----cCCCHhHHHHHHHHHHh---------cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-------
Q 048394 133 ---YFNGLSE----YAKNRYTYGALLNCYCK---------ELMTERALALFEKMDELKFLGNTVAFNNLSTMY------- 189 (485)
Q Consensus 133 ---~~~~~~~----~~~~~~~~~~li~~~~~---------~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~------- 189 (485)
+|+.... .+++...|...+....+ .|+++.|..+|++.......+....|.......
T Consensus 103 ~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~ 182 (530)
T 2ooe_A 103 MAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHL 182 (530)
T ss_dssp HHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhH
Confidence 7776644 23467788888876655 789999999999998831111123343322211
Q ss_pred ------HhCCCcccHHHHHHHHH------HcC---CCcc--------HHHHHHHHHHHHhc----CCH----hHHHHHHH
Q 048394 190 ------LRLGQPEKVRPLVNQMK------QRN---ISLD--------NLTYIVWMQSYSHL----NDI----DGVERVFY 238 (485)
Q Consensus 190 ------~~~g~~~~a~~~~~~~~------~~~---~~p~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~ 238 (485)
.+.++++.|..++.+.. +.. ++|+ ...|...+...... ++. ..+..+|+
T Consensus 183 ~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~ 262 (530)
T 2ooe_A 183 AKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYE 262 (530)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHH
Confidence 12345677777776632 111 2443 23455544333221 232 37788999
Q ss_pred HHHhccCCCCcHHHHHHHHHHHHh-------cccHH-------HHHHHHHHHHh-cCCCChHHHHHHHHHHHhcCChhhH
Q 048394 239 EMCNECEDKCRWTTYSNLASIYVK-------AELFE-------KAELALKKLEE-MKPRDRKAYHFLISLYCNTSNLDAV 303 (485)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a 303 (485)
+... ..+.+...|..++..+.+ .|+++ +|..++++..+ ..|.+...|..++..+.+.|++++|
T Consensus 263 ~al~--~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A 340 (530)
T 2ooe_A 263 QCLL--VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKV 340 (530)
T ss_dssp HHHH--HHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHH--hCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHH
Confidence 9988 567788888888888876 68876 99999999997 6788899999999999999999999
Q ss_pred HHHHHHhhhcCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHH-HHhcCcHHHHHHHHHHHHh
Q 048394 304 NRVWGILKSTFPPTN-TSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRA-YLQKDMYEEAALIFNNAKK 381 (485)
Q Consensus 304 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~ 381 (485)
..+|+++.+..+.+. ..|..++..+.+.|++++|.++|+...+.... +...|...+.. +...|+.++|..+|++..+
T Consensus 341 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~ 419 (530)
T 2ooe_A 341 HSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLK 419 (530)
T ss_dssp HHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 999999999776654 68999999999999999999999999886432 33333332222 3468999999999999988
Q ss_pred cccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCcc--HHHHHHHHHHHhhcCChhhHHHHHHHHhhcC
Q 048394 382 RANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPM--QVTVDTFFRFFEEEKDVDGAEEFCKVLKSLN 459 (485)
Q Consensus 382 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 459 (485)
.. +.+...|..++..+.+.|+.++|..+|++++.... ..|+ ...|..++......|+.+.+..+.+++.+..
T Consensus 420 ~~---p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~---~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 420 KY---GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS---LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HH---TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC---SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HC---CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 63 34567888899999999999999999999998631 2232 4588888888889999999999999999987
Q ss_pred CC
Q 048394 460 CL 461 (485)
Q Consensus 460 ~~ 461 (485)
|.
T Consensus 494 p~ 495 (530)
T 2ooe_A 494 RE 495 (530)
T ss_dssp HH
T ss_pred ch
Confidence 74
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=1.2e-18 Score=154.53 Aligned_cols=256 Identities=9% Similarity=0.013 Sum_probs=190.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcH
Q 048394 83 VRSLRKFGRYRHALEVIEWMESRKMHFSY--TDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMT 160 (485)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 160 (485)
++.....|+++.|+..++...... |+. .....+.++|...|+++.|+..++.. .+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~--~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKPS--SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT--SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhccc--CChhHHHHHHHHHHHcCCCcH
Confidence 455667788888888887654433 332 34455677888888888888777553 345677788888888888888
Q ss_pred HHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 048394 161 ERALALFEKMDELKFLGN-TVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYE 239 (485)
Q Consensus 161 ~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 239 (485)
++|++.++++...+..|+ ...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888888887665454 44556666788888888888888876 35677788888888888888888888888
Q ss_pred HHhccCCCCcHHH--HHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCC
Q 048394 240 MCNECEDKCRWTT--YSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPT 317 (485)
Q Consensus 240 ~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 317 (485)
+.+. .+.+... ...++..+...|++++|..+|+++.+..|.++..++.+..++.+.|++++|...++++....|.+
T Consensus 156 ~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 233 (291)
T 3mkr_A 156 MQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233 (291)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 8872 2222211 12233444455888888888888888777788888888888888888888888888888888878
Q ss_pred hhhHHHHHHHHHhcCChhH-HHHHHHHHHHccCC
Q 048394 318 NTSYLVLLQALAKLNAIDI-LKQCFEEWESRCSS 350 (485)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~ 350 (485)
..++..++..+...|+.++ +.++++++.+..+.
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 8888888888888888765 56788888776544
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=7.1e-19 Score=156.05 Aligned_cols=257 Identities=11% Similarity=0.060 Sum_probs=162.9
Q ss_pred HHhCCCcccHHHHHHHHHHcCCCccH--HHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccH
Q 048394 189 YLRLGQPEKVRPLVNQMKQRNISLDN--LTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELF 266 (485)
Q Consensus 189 ~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 266 (485)
....|+++.|+..++..... .|+. .....+.++|...|+++.|+..++. ..+|+..++..+...+...++.
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----cCChhHHHHHHHHHHHcCCCcH
Confidence 34456666666665554332 2332 2334455666666666666654422 2445556666666666666666
Q ss_pred HHHHHHHHHHHhc--CCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 048394 267 EKAELALKKLEEM--KPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEW 344 (485)
Q Consensus 267 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 344 (485)
++|.+.++++... .|.+...+..+..++...|++++|...+++ +.+...+..++..+.+.|+.++|.+.++.+
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6776666666542 355566666666666777777777766665 335666666777777777777777777777
Q ss_pred HHccCCCCHHhH---HHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhh
Q 048394 345 ESRCSSYDMRLA---DVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAK 421 (485)
Q Consensus 345 ~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 421 (485)
.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...+++++..
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-- 229 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC---SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK-- 229 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 6653 232111 122333445577888888888877763 556667777777778888888888888887776
Q ss_pred hcCCCccHHHHHHHHHHHhhcCChhh-HHHHHHHHhhcCCCCHHHHH
Q 048394 422 QFHWRPMQVTVDTFFRFFEEEKDVDG-AEEFCKVLKSLNCLDFSAYS 467 (485)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~~~~~~~~~ 467 (485)
.+.+..++..++..+...|+.++ +.++++++.+..|.++.+..
T Consensus 230 ---~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 230 ---DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 44566777777777777777765 56777888887777766543
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=1.6e-18 Score=156.98 Aligned_cols=359 Identities=11% Similarity=0.083 Sum_probs=167.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHH
Q 048394 74 VRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNC 153 (485)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~ 153 (485)
+++..+..+..++.+.|++++|++.|.+. +|..+|..++..+...|++++|..+++...+..+++.+.+.++.+
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~ 103 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFA 103 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHH
Confidence 44468889999999999999999999652 577788888999999999999999888877755667888899999
Q ss_pred HHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHH
Q 048394 154 YCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGV 233 (485)
Q Consensus 154 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 233 (485)
|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|..+ ..|..++.++.+.|++++|
T Consensus 104 Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~A 167 (449)
T 1b89_A 104 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAA 167 (449)
T ss_dssp -----CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHH
T ss_pred HHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHH
Confidence 999999999888874 267779999999999999999999999866 4788899999999999999
Q ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhc
Q 048394 234 ERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKST 313 (485)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 313 (485)
.+.++.+ .++.+|..++.+|+..|+++.|......+. .++.-...++..|.+.|.+++|..+++.....
T Consensus 168 Vea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 168 VDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV----VHADELEELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp HHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 9999877 267888889999999999999966554422 24444556888899999999999999988877
Q ss_pred CCCChhhHHHHHHHHHhc--CChhHHHHHHHHHHHccCCC------CHHhHHHHHHHHHhcCcHHHHHHHHHHHHhccc-
Q 048394 314 FPPTNTSYLVLLQALAKL--NAIDILKQCFEEWESRCSSY------DMRLADVIIRAYLQKDMYEEAALIFNNAKKRAN- 384 (485)
Q Consensus 314 ~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~- 384 (485)
.......|+.+.-+|++- +++.+.++.|..- .+++| +...|..++-.|...++++.|..+.-+-...-.
T Consensus 237 e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~ 314 (449)
T 1b89_A 237 ERAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWK 314 (449)
T ss_dssp TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCC
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhh
Confidence 655777787777777763 3444444444321 11111 466788888889999999988775432211100
Q ss_pred --------ccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHh
Q 048394 385 --------ASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLK 456 (485)
Q Consensus 385 --------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 456 (485)
+...+...|-..+..|.. ....++.-+-..+... .|. ...+..+.+.|++.-+..++..+.
T Consensus 315 ~~~f~~~~~kv~n~elyYkai~fyl~--~~p~~l~~ll~~l~~~------ld~---~r~v~~~~~~~~l~l~~~yl~~v~ 383 (449)
T 1b89_A 315 EGQFKDIITKVANVELYYRAIQFYLE--FKPLLLNDLLMVLSPR------LDH---TRAVNYFSKVKQLPLVKPYLRSVQ 383 (449)
T ss_dssp HHHHHHHHHHCSSTHHHHHHHHHHHH--HCGGGHHHHHHHHGGG------CCH---HHHHHHHHHTTCTTTTHHHHHHHH
T ss_pred hHHHHHHHhchhHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhc------cCc---HHHHHHHHHcCCcHHHHHHHHHHH
Confidence 002233444444444441 1111122222211110 111 334445566666666666665555
Q ss_pred hcCCCCHHHHHHHHHHHHHhCCCc
Q 048394 457 SLNCLDFSAYSLLIKTYIAAGKLA 480 (485)
Q Consensus 457 ~~~~~~~~~~~~l~~~~~~~g~~~ 480 (485)
. ..+..+-..|-..|....+++
T Consensus 384 ~--~n~~~vnealn~l~ieeed~~ 405 (449)
T 1b89_A 384 N--HNNKSVNESLNNLFITEEDYQ 405 (449)
T ss_dssp T--TCCHHHHHHHHHHHHHTTCHH
T ss_pred H--hhHHHHHHHHHHHHHhhhhHH
Confidence 4 245555566666677666654
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=6.2e-20 Score=166.15 Aligned_cols=281 Identities=10% Similarity=0.110 Sum_probs=97.7
Q ss_pred hhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHH
Q 048394 123 KTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLV 202 (485)
Q Consensus 123 ~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 202 (485)
+.|++++|.++++++.. ..+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.++
T Consensus 15 ~~~~ld~A~~fae~~~~----~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE----PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC----hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 55667777777777732 347777777777777777777777542 35557777777777777777777766
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC
Q 048394 203 NQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPR 282 (485)
Q Consensus 203 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 282 (485)
+..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|++++|...|..+
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp --------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 655553 3445666677777777777777665553 244456666777777777777777777654
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHH
Q 048394 283 DRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRA 362 (485)
Q Consensus 283 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 362 (485)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ..++.-...++..
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~ 216 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINY 216 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHH
Confidence 35667777777777777777777666 25666677777777777777774443321 1233334456666
Q ss_pred HHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHh--cccHHHHHHHHHHHHHHhhhcCCCc------cHHHHHH
Q 048394 363 YLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLR--SRQLDLALNEMEAALSEAKQFHWRP------MQVTVDT 434 (485)
Q Consensus 363 ~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~------~~~~~~~ 434 (485)
|.+.|++++|..+++...... +-....|+.+..+|++ -++..+.++.|..-+. ++| +...|.-
T Consensus 217 Yek~G~~eEai~lLe~aL~le---~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~in------i~k~~~~~~~~~~w~e 287 (449)
T 1b89_A 217 YQDRGYFEELITMLEAALGLE---RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN------IPKVLRAAEQAHLWAE 287 (449)
T ss_dssp HHHTTCHHHHHHHHHHHTTST---TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSC------HHHHHHHHHTTTCHHH
T ss_pred HHHCCCHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc------CcHHHHHHHHHHHHHH
Confidence 777777777777776665443 3334455555555543 3344444444433222 122 2445666
Q ss_pred HHHHHhhcCChhhHHH
Q 048394 435 FFRFFEEEKDVDGAEE 450 (485)
Q Consensus 435 l~~~~~~~~~~~~A~~ 450 (485)
+...|...++++.|..
T Consensus 288 ~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 288 LVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHhhchHHHHHH
Confidence 6666666666665543
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.8e-17 Score=144.78 Aligned_cols=238 Identities=12% Similarity=0.005 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCC-------hHHH
Q 048394 215 LTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRD-------RKAY 287 (485)
Q Consensus 215 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~ 287 (485)
..+..+...+...|++++|...|+.+.+ .. .+..++..++.+|...|++++|...++++.+..|.+ ..++
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~-~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWE-LH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH-hh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4455566666666666666666666666 22 555666666666666666666666666666633322 4666
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcC
Q 048394 288 HFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKD 367 (485)
Q Consensus 288 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 367 (485)
..+...+...|++++|...++++....+. ...+...|++++|.+.++.+....+. +...+..+...+...|
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhc
Confidence 66777777777777777777766665443 23455667777788777777765433 4566777778888888
Q ss_pred cHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhh
Q 048394 368 MYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDG 447 (485)
Q Consensus 368 ~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 447 (485)
++++|...|+++.+.. +.+...|..+...|...|++++|+..++++++. .+.+...+..+..++...|++++
T Consensus 154 ~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~g~~~~ 225 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA---PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-----DPNFVRAYIRKATAQIAVKEYAS 225 (258)
T ss_dssp CHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CHHHHHHHHHHHHHHHHHhhHHH
Confidence 8888888888887764 345667777778888888888888888888876 34557777788888888888888
Q ss_pred HHHHHHHHhhcC------CCCHHHHHHHHHH
Q 048394 448 AEEFCKVLKSLN------CLDFSAYSLLIKT 472 (485)
Q Consensus 448 A~~~~~~~~~~~------~~~~~~~~~l~~~ 472 (485)
|...++++.+.. |.+..++..+..+
T Consensus 226 A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 226 ALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 888888888877 6677776666544
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.79 E-value=2.3e-17 Score=139.84 Aligned_cols=204 Identities=15% Similarity=0.074 Sum_probs=115.2
Q ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHH
Q 048394 248 CRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQA 327 (485)
Q Consensus 248 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 327 (485)
++...+..+...+.+.|++++|...|+++.+..|.+...+..+..++...|++++|...+++..+..|.+...+..+..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34444445555555555555555555555555555555555555555555555555555555555555454555555444
Q ss_pred HHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHH
Q 048394 328 LAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLD 407 (485)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 407 (485)
+...+.. ... .+...|++++|...|++..+.. +-+...+..+...+...|+++
T Consensus 83 ~~~~~~~---------------~~~---------~~~~~g~~~~A~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~ 135 (217)
T 2pl2_A 83 YVALYRQ---------------AED---------RERGKGYLEQALSVLKDAERVN---PRYAPLHLQRGLVYALLGERD 135 (217)
T ss_dssp HHHHHHT---------------CSS---------HHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhhh---------------hhh---------hcccccCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCChH
Confidence 4443000 000 0011177777777777776653 234455666666777777777
Q ss_pred HHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcchhc
Q 048394 408 LALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDMR 484 (485)
Q Consensus 408 ~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 484 (485)
+|+..|+++++. . .+...+..+..++...|++++|...++++.+..|.++.++..++.++.+.|++++|+.
T Consensus 136 ~A~~~~~~al~~-----~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 136 KAEASLKQALAL-----E-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp HHHHHHHHHHHH-----C-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHHhc-----c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHH
Confidence 777777777766 3 5666677777777777777777777777777777777777777777777777777654
No 35
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.79 E-value=8e-17 Score=147.59 Aligned_cols=251 Identities=8% Similarity=0.018 Sum_probs=200.4
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhccc-HHHHHHHHHHHHhcCCCChHHHHHHHH
Q 048394 214 NLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAEL-FEKAELALKKLEEMKPRDRKAYHFLIS 292 (485)
Q Consensus 214 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~ 292 (485)
...|..+...+...|++++|+..++++.+ ..+.+..+|..+..++...|+ +++|+..|+++....|.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~--l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIE--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 44566677777888888888888888887 566778888888888888886 888888888888888888888888888
Q ss_pred HHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHh-cCcHHH
Q 048394 293 LYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQ-KDMYEE 371 (485)
Q Consensus 293 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~ 371 (485)
++...|++++|+..|+++....+.+..+|..+..++...|++++|+..++++.+..+. +...|+.+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchH
Confidence 8888888888888888888888888888888888888888888888888888887666 77888888888888 555466
Q ss_pred H-----HHHHHHHHhcccccCCchhHHHHHHHHHHhcc--cHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcC-
Q 048394 372 A-----ALIFNNAKKRANASARFFKSRESFMIYYLRSR--QLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEK- 443 (485)
Q Consensus 372 A-----~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 443 (485)
| +..|++.++.. +-+...|..+...+...| ++++|++.+.++ +. .+.+...+..+...+.+.|
T Consensus 254 A~~~~el~~~~~Al~l~---P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-----~p~~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV---PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-----SHSSPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp HHHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-----TCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-----CCCCHHHHHHHHHHHHHHhc
Confidence 6 47788887764 345567777777777777 688888888887 33 4455677788888887764
Q ss_pred -------C-hhhHHHHHHHH-hhcCCCCHHHHHHHHHHHHHh
Q 048394 444 -------D-VDGAEEFCKVL-KSLNCLDFSAYSLLIKTYIAA 476 (485)
Q Consensus 444 -------~-~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 476 (485)
+ +++|.++++++ .+.+|.....|..++..+...
T Consensus 325 ~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 325 NQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58899999999 888898889998888887654
No 36
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.79 E-value=1.2e-15 Score=154.10 Aligned_cols=358 Identities=11% Similarity=0.054 Sum_probs=240.1
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC--CCChhhHHHHHHH---------------------------HHh
Q 048394 73 TVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKM--HFSYTDFAVYLDL---------------------------TAK 123 (485)
Q Consensus 73 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~---------------------------~~~ 123 (485)
..++......+++|...|.+.+|+++++++.-.+- .-+...-+.++.+ +..
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~ 1061 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAIS 1061 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHh
Confidence 35677778889999999999999999999974421 0122333334333 334
Q ss_pred hCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHH
Q 048394 124 TNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVN 203 (485)
Q Consensus 124 ~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 203 (485)
.|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++...|++++|++.|.
T Consensus 1062 lglyEEAf~IYkKa~~---~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFDV---NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred CCCHHHHHHHHHHcCC---HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4556666666665532 2222222222 4456666666665441 35577778888888888888888775
Q ss_pred HHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCC
Q 048394 204 QMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRD 283 (485)
Q Consensus 204 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 283 (485)
+. -|...|..++.++.+.|++++|.+++....+ .. ++....+.++.+|++.+++++..... ..++
T Consensus 1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk-~~--~e~~Idt~LafaYAKl~rleele~fI------~~~n 1194 (1630)
T 1xi4_A 1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARK-KA--RESYVETELIFALAKTNRLAELEEFI------NGPN 1194 (1630)
T ss_pred hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hc--ccccccHHHHHHHHhhcCHHHHHHHH------hCCC
Confidence 53 3556677778888888888888888877666 22 23222334777777777777533332 2335
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHH
Q 048394 284 RKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAY 363 (485)
Q Consensus 284 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 363 (485)
...|..+...|...|++++|..+|..+ ..|..++.++.+.|+++.|.+.+++. .+..+|..+..+|
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFAC 1260 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHH
Confidence 566667888888888888888888774 47777888888888888888888766 2567788788888
Q ss_pred HhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhh--
Q 048394 364 LQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEE-- 441 (485)
Q Consensus 364 ~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 441 (485)
...|++..|......+ ..+...+..++..|.+.|.+++|+.+++..+.. .+-....|.-+...+.+
T Consensus 1261 ve~~Ef~LA~~cgl~I-------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~L-----eraH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLHI-------VVHADELEELINYYQDRGYFEELITMLEAALGL-----ERAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred hhhhHHHHHHHHHHhh-------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----ChhHhHHHHHHHHHHHhCC
Confidence 8888888877766532 334456678888899999999999999888765 22334455555555544
Q ss_pred cCChhhHHHHHHHHhhcCC-----CCHHHHHHHHHHHHHhCCCcchh
Q 048394 442 EKDVDGAEEFCKVLKSLNC-----LDFSAYSLLIKTYIAAGKLASDM 483 (485)
Q Consensus 442 ~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~ 483 (485)
-++..++.+.|..-....+ .+...|..++-.|.+.|+++.|+
T Consensus 1329 peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1329 PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 3455666666665555444 47788999999999999999887
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.78 E-value=6.5e-17 Score=142.57 Aligned_cols=251 Identities=10% Similarity=0.007 Sum_probs=165.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCC----hHHHHHHHH
Q 048394 217 YIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRD----RKAYHFLIS 292 (485)
Q Consensus 217 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~ 292 (485)
+......+...|++++|+..|+.+.+ ..+.+...+..++.+|...|++++|...++++.+. +++ ..+|..+..
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEA--KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEYYGK 82 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHH--TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHHHHH
Confidence 33445556666666666666666665 33344445556666666666666666666666652 222 223666666
Q ss_pred HHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHH
Q 048394 293 LYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEA 372 (485)
Q Consensus 293 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 372 (485)
.+...|++++|...+++..+..+.+..++..+...+...|++++|.+.+++..+..+. +...+..+...+...+++++|
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777766666666666777777777777777777777766665333 555666666233334588888
Q ss_pred HHHHHHHHhcccccCCchhHHHHHHHHHHhccc---HHHHHHHHHHHHHHhhhcCCCcc------HHHHHHHHHHHhhcC
Q 048394 373 ALIFNNAKKRANASARFFKSRESFMIYYLRSRQ---LDLALNEMEAALSEAKQFHWRPM------QVTVDTFFRFFEEEK 443 (485)
Q Consensus 373 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~ 443 (485)
...|+++.+.. +.+...+..+...+...|+ +++|...++++.+.... .|+ ...|..+...+...|
T Consensus 162 ~~~~~~a~~~~---p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 162 DSSFVKVLELK---PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAP---GGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp HHHHHHHHHHS---TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGG---GGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC---ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhc---ccccchHHHHHHHHHHHHHHHHcC
Confidence 88888887763 3335566667777777777 77888888888776421 122 256777888889999
Q ss_pred ChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhC
Q 048394 444 DVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAG 477 (485)
Q Consensus 444 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 477 (485)
++++|...++++.+..|.++.++..+.......+
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 236 DKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred CHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 9999999999999999999999888877766554
No 38
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.78 E-value=9.1e-20 Score=178.06 Aligned_cols=150 Identities=11% Similarity=0.080 Sum_probs=123.3
Q ss_pred CChhhHHHHHHHHHhhCCHHHHHHHHHhhcc-----cCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHH
Q 048394 109 FSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE-----YAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFN 183 (485)
Q Consensus 109 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 183 (485)
....+|+++|++|++.|++++|.++|++|.+ ..||..+||+||.+|++.|++++|.++|++|.+.|+.||..|||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3456899999999999999999999988753 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCc-ccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCc------HHHHHHH
Q 048394 184 NLSTMYLRLGQP-EKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCR------WTTYSNL 256 (485)
Q Consensus 184 ~l~~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l 256 (485)
++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+.+ +++.++.+.. +..|+ ..+...|
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv~P--~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKVKP--TFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGGCC--CCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHhCc--ccCCCCCCcccccchHHH
Confidence 999999999985 789999999999999999999999987665553 3334444422 33332 3333446
Q ss_pred HHHHHhcc
Q 048394 257 ASIYVKAE 264 (485)
Q Consensus 257 ~~~~~~~~ 264 (485)
.+.|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 66666544
No 39
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=7.5e-15 Score=148.42 Aligned_cols=350 Identities=9% Similarity=0.103 Sum_probs=265.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcC
Q 048394 79 LEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKEL 158 (485)
Q Consensus 79 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~ 158 (485)
...+...+...|.+++|..+|++.. -.....+.++. ..+++++|.++.++.. +..+|..+..++...|
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn----~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN----EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC----CHHHHHHHHHHHHhCC
Confidence 3446778889999999999999852 12222233332 7789999999999774 5789999999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHH
Q 048394 159 MTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFY 238 (485)
Q Consensus 159 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 238 (485)
++++|++.|.+. -|...|..++.++.+.|++++|.++|...++.. ++....+.++.+|++.+++++...+.
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 999999999664 367789999999999999999999999888754 44444456999999999988644332
Q ss_pred HHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCCh
Q 048394 239 EMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTN 318 (485)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 318 (485)
+ .++...+..++..|...|++++|...|..+ ..|..++.++.+.|++++|.+.+++. .+.
T Consensus 1191 ---~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~ 1250 (1630)
T 1xi4_A 1191 ---N----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NST 1250 (1630)
T ss_pred ---h----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCH
Confidence 2 234556667999999999999999999984 58999999999999999999999987 457
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHH
Q 048394 319 TSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMI 398 (485)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~ 398 (485)
.+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|..+++.....+ +-....|.-+..
T Consensus 1251 ~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le---raH~gmftELai 1322 (1630)
T 1xi4_A 1251 RTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE---RAHMGMFTELAI 1322 (1630)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC---hhHhHHHHHHHH
Confidence 89999999999999999998876643 2367777889999999999999999998887653 334455666666
Q ss_pred HHHh--cccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhh------------cCCCCHH
Q 048394 399 YYLR--SRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKS------------LNCLDFS 464 (485)
Q Consensus 399 ~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------~~~~~~~ 464 (485)
.|++ -++..++++.|..-....+--...-+...|.-++..|.+.|+++.|....-.-.. ..+.|+.
T Consensus 1323 LyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~e 1402 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVE 1402 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHH
Confidence 6654 4556666666654333200000112567899999999999999998732211111 1355888
Q ss_pred HHHHHHHHHHHhC
Q 048394 465 AYSLLIKTYIAAG 477 (485)
Q Consensus 465 ~~~~l~~~~~~~g 477 (485)
.|...+..|....
T Consensus 1403 lyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1403 LYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHHHhhC
Confidence 8888888888665
No 40
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.78 E-value=4.1e-17 Score=141.20 Aligned_cols=221 Identities=13% Similarity=-0.022 Sum_probs=163.7
Q ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHH
Q 048394 248 CRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQA 327 (485)
Q Consensus 248 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 327 (485)
.....+..++..+...|++++|...|+++.+..|.+...+..+...+...|++++|...++++....+.+...+..+...
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34455666777777888888888888888777777788888888888888888888888888887777777888888888
Q ss_pred HHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHH
Q 048394 328 LAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLD 407 (485)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 407 (485)
+...|++++|.+.++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN---ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHcCCHH
Confidence 88888888888888888877544 67778888888999999999999999888764 445677888888899999999
Q ss_pred HHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhC
Q 048394 408 LALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAG 477 (485)
Q Consensus 408 ~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 477 (485)
+|...++++.+. .+.+..++..+..++...|++++|...++++.+..|.++.++..+.......|
T Consensus 177 ~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 177 EALSQFAAVTEQ-----DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHHHHHHh-----CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 999999999887 44567788889999999999999999999999999999988888776655444
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.5e-16 Score=138.96 Aligned_cols=224 Identities=16% Similarity=0.095 Sum_probs=117.2
Q ss_pred HhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCC--Ccc----HHHH
Q 048394 144 RYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNI--SLD----NLTY 217 (485)
Q Consensus 144 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~----~~~~ 217 (485)
...|..+...+...|++++|...|++..+.. .+..+|..+..++...|++++|++.+++..+... .|+ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456666666666777777777777766655 4666666666666667777777766666655310 011 3455
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Q 048394 218 IVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNT 297 (485)
Q Consensus 218 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 297 (485)
..+...+...|++++|...++.+.+ ..|+. ..+...|++++|...++.+....|.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLT---EHRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---HCCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh---cCchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHh
Confidence 5555666666666666666666655 22232 2344445555555555555554444444555555555555
Q ss_pred CChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHH
Q 048394 298 SNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFN 377 (485)
Q Consensus 298 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 377 (485)
|++++|...++++....+.+...+..+...+...|++++|...++.+.+..+. +...+..+..++...|++++|...|+
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 55555555555554444444444444444444444444444444444443222 23334444444444444444444444
Q ss_pred HHH
Q 048394 378 NAK 380 (485)
Q Consensus 378 ~~~ 380 (485)
+..
T Consensus 232 ~a~ 234 (258)
T 3uq3_A 232 AAR 234 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.77 E-value=6.2e-17 Score=142.90 Aligned_cols=249 Identities=12% Similarity=0.070 Sum_probs=165.2
Q ss_pred hcCCHhHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhH
Q 048394 226 HLNDIDGVERVFYEMCNECE--DKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAV 303 (485)
Q Consensus 226 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 303 (485)
..|++++|+..++++.+... .+.+..++..++.++...|++++|...|+++.+..|.+..+|..+...+...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 34667777777777766211 1224556667777777777777777777777776676777777777777777777777
Q ss_pred HHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q 048394 304 NRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRA 383 (485)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 383 (485)
...++++....+.+..++..+...+...|++++|.+.++++.+..+. .......+..+...|++++|...+++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN--DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 77777777776666777777777777777777777777777765432 2233333344455678888888887776653
Q ss_pred cccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCH
Q 048394 384 NASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDF 463 (485)
Q Consensus 384 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 463 (485)
+++...+ .++..+...++.++|+..++++....... .+.+...+..+...+...|++++|...++++.+..|.+.
T Consensus 175 ---~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 175 ---DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSL-AEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp ---CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred ---CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccc-cccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 3333333 35566667777778888887776543110 001246677777888888888888888888888777664
Q ss_pred HHHHHHHHHHHHhCCCcchhc
Q 048394 464 SAYSLLIKTYIAAGKLASDMR 484 (485)
Q Consensus 464 ~~~~~l~~~~~~~g~~~~A~~ 484 (485)
..+ +.++...|++++|++
T Consensus 250 ~~~---~~~~~~l~~~~~a~~ 267 (275)
T 1xnf_A 250 VEH---RYALLELSLLGQDQD 267 (275)
T ss_dssp HHH---HHHHHHHHHHHHC--
T ss_pred HHH---HHHHHHHHHHHhhHH
Confidence 433 556667777777764
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.77 E-value=9.6e-17 Score=136.03 Aligned_cols=199 Identities=16% Similarity=0.063 Sum_probs=126.5
Q ss_pred CccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHH
Q 048394 211 SLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFL 290 (485)
Q Consensus 211 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 290 (485)
+++...+..+...+.+.|++++|...|+...+ ..|.+...+..+..++.+.|++++|...++++.+..|.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALK--ENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 34555666667777777777777777777776 5666677777777777777777777777777777777777777777
Q ss_pred HHHHHhc-----------CChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHH
Q 048394 291 ISLYCNT-----------SNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVI 359 (485)
Q Consensus 291 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 359 (485)
..++... |++++|...+++..+..|.+...+..+..++...|++++|+..|++..+.. .+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 7777777 777777777777666666666666666666777777777777777666665 366666666
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHH
Q 048394 360 IRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAA 416 (485)
Q Consensus 360 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (485)
..+|...|++++|...|++..+.. +.+...+..+...+...|++++|+..+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~---P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA---PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666777777777777777666653 334455556666666667777776666654
No 44
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=2.7e-19 Score=174.84 Aligned_cols=150 Identities=16% Similarity=0.108 Sum_probs=124.8
Q ss_pred HhHHHHHHHHHHhcCcHHHHHHHHHHHHh---CCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHH
Q 048394 144 RYTYGALLNCYCKELMTERALALFEKMDE---LKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVW 220 (485)
Q Consensus 144 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 220 (485)
..+||+||++|++.|++++|.++|++|.+ .|+.||+.|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45899999999999999999999988764 589999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCH-hHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHh-cCC-----CChHHHHHHHHH
Q 048394 221 MQSYSHLNDI-DGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEE-MKP-----RDRKAYHFLISL 293 (485)
Q Consensus 221 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~-----~~~~~~~~l~~~ 293 (485)
|.++++.|+. ++|.++|++|.+ .|+.||..+|+.++....+.+ .++..+++.. ..| +...+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRAT----VLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHH----HHHHHGGGCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHH----HHHHHHHhCcccCCCCCCcccccchHHHHHH
Confidence 9999999985 789999999999 899999999999987665543 3333333322 111 224455566677
Q ss_pred HHhcC
Q 048394 294 YCNTS 298 (485)
Q Consensus 294 ~~~~~ 298 (485)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 77655
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.76 E-value=9e-16 Score=130.90 Aligned_cols=215 Identities=11% Similarity=-0.019 Sum_probs=166.9
Q ss_pred CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHH
Q 048394 247 KCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQ 326 (485)
Q Consensus 247 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 326 (485)
+.+...+..++..+...|++++|...++++.+..|.+...+..+...+...|++++|...++++....+.+..++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 34556667777778888888888888888777777777788888888888888888888888887777767777788888
Q ss_pred HHHhc-CChhHHHHHHHHHHHccCCC-CHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcc
Q 048394 327 ALAKL-NAIDILKQCFEEWESRCSSY-DMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSR 404 (485)
Q Consensus 327 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 404 (485)
.+... |++++|...++.+.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ---PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHT
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCchHHHHHHHHHHHcC
Confidence 88888 88888888888887732222 35677778888888888888888888888764 334667778888888899
Q ss_pred cHHHHHHHHHHHHHHhhhcCCC-ccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHH
Q 048394 405 QLDLALNEMEAALSEAKQFHWR-PMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLL 469 (485)
Q Consensus 405 ~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 469 (485)
++++|...++++.... + .+...+..+...+...|+.+.|..+++.+.+..|.++.....+
T Consensus 162 ~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRV-----EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp CHHHHHHHHHHHHHHH-----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-----CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 9999999999888874 3 4566677777777888889999888888888888887776554
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.76 E-value=5.1e-16 Score=135.12 Aligned_cols=209 Identities=13% Similarity=0.004 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHh
Q 048394 251 TTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAK 330 (485)
Q Consensus 251 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 330 (485)
..+..++..+...|++++|...++++.+..|.+...+..+...+...|++++|...++++....+.+...+..+...+..
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH
Confidence 34444555555555555555555555554454555555555555555555555555555555554455555555555666
Q ss_pred cCChhHHHHHHHHHHHccCCC-CHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHH
Q 048394 331 LNAIDILKQCFEEWESRCSSY-DMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLA 409 (485)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 409 (485)
.|++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN---RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666555421222 34455556666666666666666666666553 23345566666666677777777
Q ss_pred HHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHH
Q 048394 410 LNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYS 467 (485)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 467 (485)
...++++.+. .+.+...+..+...+...|++++|.++++++.+..|.++....
T Consensus 195 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 195 RQYYDLFAQG-----GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHTT-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHHh-----CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 7777776664 3345556666666666777777777777777776666665544
No 47
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.75 E-value=2.8e-16 Score=148.60 Aligned_cols=347 Identities=12% Similarity=0.068 Sum_probs=239.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCH---HHHHHHHHhhcccCCCHhHHHHHHHHHHhc
Q 048394 81 YCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGI---AAAEKYFNGLSEYAKNRYTYGALLNCYCKE 157 (485)
Q Consensus 81 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~li~~~~~~ 157 (485)
.+...+.+.|++++|+++|++..+.| +...+..+...|...|+. ++|.++|++..+. +...+..|...+...
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHhC
Confidence 35667788999999999999998876 334444566666677877 8999999998874 667777777755555
Q ss_pred C-----cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCc---ccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 048394 158 L-----MTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQP---EKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLND 229 (485)
Q Consensus 158 ~-----~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 229 (485)
+ ++++|+..|++..+.|. ...+..|...|...+.. .++.+.+......| +......+...|...+.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred CCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 4 88999999999998763 34778888888776654 44555555555555 34456667777888775
Q ss_pred HhHHHH----HHHHHHhccCCCCcHHHHHHHHHHHHhcc---cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc----C
Q 048394 230 IDGVER----VFYEMCNECEDKCRWTTYSNLASIYVKAE---LFEKAELALKKLEEMKPRDRKAYHFLISLYCNT----S 298 (485)
Q Consensus 230 ~~~a~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~ 298 (485)
++++.. +++.... +. +..+..+..+|...| +.++|+..|++..+..+++...+..+...|... +
T Consensus 157 ~~~~~~~a~~~~~~a~~--~~---~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 157 YDQHLDDVERICKAALN--TT---DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGGGHHHHHHHHHHHTT--TC---TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSC
T ss_pred cccCHHHHHHHHHHHHc--CC---HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCC
Confidence 555444 4444433 22 237778999999999 999999999999998888888878888888765 7
Q ss_pred ChhhHHHHHHHhhhcCCCChhhHHHHHHH-H--HhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcC-----cHH
Q 048394 299 NLDAVNRVWGILKSTFPPTNTSYLVLLQA-L--AKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKD-----MYE 370 (485)
Q Consensus 299 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~ 370 (485)
++++|...|++.. +.+...+..+... + ...++.++|.+.|++..+.| +...+..|...|. .| +++
T Consensus 232 d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 232 DEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp CHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred CHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 8999999999987 3477777788777 4 46899999999999998876 6777777888887 45 999
Q ss_pred HHHHHHHHHHhcccccCCchhHHHHHHHHHHh----cccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhh----c
Q 048394 371 EAALIFNNAKKRANASARFFKSRESFMIYYLR----SRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEE----E 442 (485)
Q Consensus 371 ~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 442 (485)
+|...|++.. .| .| ..+..|...|.. ..++++|..+|++..+.| . ......|...|.. .
T Consensus 305 ~A~~~~~~Aa-~g---~~--~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g----~---~~A~~~Lg~~y~~G~g~~ 371 (452)
T 3e4b_A 305 AAEAHFEKAV-GR---EV--AADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG----Q---NSADFAIAQLFSQGKGTK 371 (452)
T ss_dssp HHHHHHHTTT-TT---CH--HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT----C---TTHHHHHHHHHHSCTTBC
T ss_pred HHHHHHHHHh-CC---CH--HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC----h---HHHHHHHHHHHHhCCCCC
Confidence 9999999887 54 22 455556666655 349999999999998875 2 3344455555543 4
Q ss_pred CChhhHHHHHHHHhhcCCCCH
Q 048394 443 KDVDGAEEFCKVLKSLNCLDF 463 (485)
Q Consensus 443 ~~~~~A~~~~~~~~~~~~~~~ 463 (485)
+|.++|..+|++..+.++++.
T Consensus 372 ~d~~~A~~~~~~A~~~g~~~a 392 (452)
T 3e4b_A 372 PDPLNAYVFSQLAKAQDTPEA 392 (452)
T ss_dssp CCHHHHHHHHHHHHTTCCHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHH
Confidence 689999999999998775443
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.75 E-value=1e-15 Score=134.86 Aligned_cols=233 Identities=13% Similarity=0.121 Sum_probs=119.8
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCcc--HHHHHHHHHHH
Q 048394 147 YGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLD--NLTYIVWMQSY 224 (485)
Q Consensus 147 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~ 224 (485)
+......+...|++++|+..|++..+.... +...+..+..++...|++++|++.+++..+.+..|+ ...|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 334444555555666666666555554322 333555555555555555555555555555221111 12245555555
Q ss_pred HhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHH
Q 048394 225 SHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVN 304 (485)
Q Consensus 225 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 304 (485)
...|++++|.+.|+...+ ..+.+..++..+..+|...|++++|...+++..+..|.+...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVD--RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555 233344555555555555566666665555555555555555555552222333555555
Q ss_pred HHHHHhhhcCCCChhhHHHHHHHHHhcCC---hhHHHHHHHHHHHcc-CCCC------HHhHHHHHHHHHhcCcHHHHHH
Q 048394 305 RVWGILKSTFPPTNTSYLVLLQALAKLNA---IDILKQCFEEWESRC-SSYD------MRLADVIIRAYLQKDMYEEAAL 374 (485)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~~~~~~A~~ 374 (485)
..++++.+..+.+...+..+...+...|+ .++|...++++.+.. ..|+ ..+|..+...|...|++++|..
T Consensus 163 ~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 163 SSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 55555555555555555555555555555 555555555544331 0111 1344445555555555666665
Q ss_pred HHHHHHhc
Q 048394 375 IFNNAKKR 382 (485)
Q Consensus 375 ~~~~~~~~ 382 (485)
.|+++.+.
T Consensus 243 ~~~~al~~ 250 (272)
T 3u4t_A 243 AWKNILAL 250 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 55555554
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.73 E-value=2.2e-15 Score=138.09 Aligned_cols=244 Identities=8% Similarity=-0.057 Sum_probs=128.1
Q ss_pred HHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC-HhHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Q 048394 183 NNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLND-IDGVERVFYEMCNECEDKCRWTTYSNLASIYV 261 (485)
Q Consensus 183 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 261 (485)
+.+...+...|++++|++.+++.+... +-+...|..+..++...|+ +++|+..|+++.. ..+.+...|..+..++.
T Consensus 101 ~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~--l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 101 DYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHH
Confidence 333333444444444444444444321 1123334444444444443 5555555555554 34444555555555555
Q ss_pred hcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHh-cCChhHH---
Q 048394 262 KAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAK-LNAIDIL--- 337 (485)
Q Consensus 262 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a--- 337 (485)
..|++++|+..|+++....|.+..+|..+..++...|++++|+..++++.+..+.+...|+.+..++.. .|..++|
T Consensus 178 ~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~ 257 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLE 257 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHH
Confidence 555555555555555555555555555555555555556666666665555555555555555555555 3333444
Q ss_pred --HHHHHHHHHccCCCCHHhHHHHHHHHHhcC--cHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcc---------
Q 048394 338 --KQCFEEWESRCSSYDMRLADVIIRAYLQKD--MYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSR--------- 404 (485)
Q Consensus 338 --~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--------- 404 (485)
++.+++..+..+. +...|+.+..++...| ++++|...+.++ +.+ ..+...+..+...|.+.|
T Consensus 258 ~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~---p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 258 REVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS---HSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT---CCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC---CCCHHHHHHHHHHHHHHhcccccchHH
Confidence 3556666655444 5556666666666655 466666666665 321 334455666666666553
Q ss_pred cHHHHHHHHHHH-HHHhhhcCCCccHHHHHHHHHHH
Q 048394 405 QLDLALNEMEAA-LSEAKQFHWRPMQVTVDTFFRFF 439 (485)
Q Consensus 405 ~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~ 439 (485)
..++|+++|+++ .+. .+.....|..+...+
T Consensus 333 ~~~~A~~~~~~l~~~~-----DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 333 ILNKALELCEILAKEK-----DTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHTT-----CGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-----CchhHHHHHHHHHHH
Confidence 246777777776 443 222344555444443
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.73 E-value=3.7e-15 Score=129.67 Aligned_cols=201 Identities=10% Similarity=-0.011 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 048394 214 NLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISL 293 (485)
Q Consensus 214 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 293 (485)
...+..+...+...|++++|...++.+.+ ..+.+...+..++.+|...|++++|...++++.+..|.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALE--IDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence 45566666777777777777777777776 3455667777777788888888888888888777667677778888888
Q ss_pred HHhcCChhhHHHHHHHhhh--cCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHH
Q 048394 294 YCNTSNLDAVNRVWGILKS--TFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEE 371 (485)
Q Consensus 294 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 371 (485)
+...|++++|...++++.. ..+.+...+..+...+...|++++|.+.++++.+..+. +...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888887776 33336667777788888888888888888887776544 56777778888888888888
Q ss_pred HHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Q 048394 372 AALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEA 420 (485)
Q Consensus 372 A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 420 (485)
|...++++.+.. +.+...+..+...+...|++++|.++++++.+..
T Consensus 194 A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGG---GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTS---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC---cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 888888877653 4455667777777788888888888888887763
No 51
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.73 E-value=3.2e-16 Score=146.65 Aligned_cols=307 Identities=13% Similarity=0.014 Sum_probs=182.1
Q ss_pred CHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhCCCcccHHHHHHHHHHc----CCCc-c
Q 048394 143 NRYTYGALLNCYCKELMTERALALFEKMDELKFLGN----TVAFNNLSTMYLRLGQPEKVRPLVNQMKQR----NISL-D 213 (485)
Q Consensus 143 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~ 213 (485)
....+......+...|++++|...|++..+.+.. + ..+|..+...+...|++++|...+++.... +..| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 4445556666667777777777777777665322 2 234566666666777777777777666442 1111 1
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCc----HHHHHHHHHHHHhccc--------------------HHHH
Q 048394 214 NLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCR----WTTYSNLASIYVKAEL--------------------FEKA 269 (485)
Q Consensus 214 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~--------------------~~~A 269 (485)
..++..+...+...|++++|...+++..+......+ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 334555555666666666666666655541111111 2244555555555555 4444
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcC-CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 048394 270 ELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTF-PP-TNTSYLVLLQALAKLNAIDILKQCFEEWESR 347 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 347 (485)
...+++.... +. ..+ .+ ...++..+...+...|++++|.+.+++..+.
T Consensus 167 ~~~~~~al~~---------------------------~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 167 VDFYEENLSL---------------------------VT---ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHHHHH---------------------------HH---HTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------------------------HH---hccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4444443321 00 000 01 2345556666666667777777666665543
Q ss_pred cCC-CC----HHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCc----hhHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 048394 348 CSS-YD----MRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARF----FKSRESFMIYYLRSRQLDLALNEMEAALS 418 (485)
Q Consensus 348 ~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 418 (485)
... ++ ..++..+...|...|++++|...+++..+.... .++ ..++..+...|...|++++|...+++...
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ-LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh-CcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 211 11 236667777888888888888888877654210 111 34566777788888888888888888877
Q ss_pred HhhhcCCCcc-HHHHHHHHHHHhhcCChhhHHHHHHHHhhcCC------CCHHHHHHHHHHHHHhCCCcc
Q 048394 419 EAKQFHWRPM-QVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNC------LDFSAYSLLIKTYIAAGKLAS 481 (485)
Q Consensus 419 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~ 481 (485)
.....+..+. ..++..+...+...|++++|...++++.+..+ ....++..++.++...|+...
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 6432211111 45667777888888888888888888877532 246678888888888887654
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.72 E-value=7.7e-16 Score=133.12 Aligned_cols=200 Identities=15% Similarity=0.100 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 048394 214 NLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISL 293 (485)
Q Consensus 214 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 293 (485)
...|..+...+...|++++|...|+++.+ ..+.+...+..++.++...|++++|...++++.+..|.+..++..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIE--ENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 33444455555566666666666666655 3444555666666666666666666666666666555566666666666
Q ss_pred HHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHH
Q 048394 294 YCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAA 373 (485)
Q Consensus 294 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 373 (485)
+...|++++|...++++.+..+.+...+..+...+...|++++|.+.++++.+..+. +...+..+...+...|++++|.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHHH
Confidence 666666666666666666665555566666666666666666666666666655433 4556666666666667777777
Q ss_pred HHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 048394 374 LIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSE 419 (485)
Q Consensus 374 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 419 (485)
..|+++.+.. +.+..++..+...|...|++++|...++++.+.
T Consensus 180 ~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 180 SQFAAVTEQD---PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHC---TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 7766666553 334455666666666777777777777776665
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.72 E-value=7e-15 Score=125.35 Aligned_cols=201 Identities=10% Similarity=0.001 Sum_probs=156.0
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 048394 213 DNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLIS 292 (485)
Q Consensus 213 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 292 (485)
+...+..+...+...|++++|.+.++.+.+ ..+.+...+..++.+|...|++++|...++++....|.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALK--SDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 455666777778888888888888888777 455567777778888888888888888888888777777888888888
Q ss_pred HHHhc-CChhhHHHHHHHhhh--cCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcH
Q 048394 293 LYCNT-SNLDAVNRVWGILKS--TFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMY 369 (485)
Q Consensus 293 ~~~~~-~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 369 (485)
.+... |++++|...++++.. ..+.+...+..+...+...|++++|...++++.+..+. +...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 88888 888888888888877 22234677778888888888888888888888776544 577777888888888888
Q ss_pred HHHHHHHHHHHhcccccC-CchhHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 048394 370 EEAALIFNNAKKRANASA-RFFKSRESFMIYYLRSRQLDLALNEMEAALSE 419 (485)
Q Consensus 370 ~~A~~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 419 (485)
++|..+++++.+.. + .+...+..+...+...|+.++|..+++.+...
T Consensus 164 ~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRV---EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC---CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 88888888887764 3 56666777777778888888888888888765
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.72 E-value=1.1e-15 Score=143.16 Aligned_cols=308 Identities=13% Similarity=0.013 Sum_probs=203.0
Q ss_pred CChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCC-----HhHHHHHHHHHHhcCcHHHHHHHHHHHHhC----CCCC-C
Q 048394 109 FSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKN-----RYTYGALLNCYCKELMTERALALFEKMDEL----KFLG-N 178 (485)
Q Consensus 109 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~ 178 (485)
.....+......+...|++++|...|++..+..|+ ..+|..+...+...|++++|...|++.... +..| .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 44556667788889999999999999999884443 357888999999999999999999987543 2112 2
Q ss_pred hhhHHHHHHHHHhCCCcccHHHHHHHHHHc----CCCc-cHHHHHHHHHHHHhcCC--------------------HhHH
Q 048394 179 TVAFNNLSTMYLRLGQPEKVRPLVNQMKQR----NISL-DNLTYIVWMQSYSHLND--------------------IDGV 233 (485)
Q Consensus 179 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~--------------------~~~a 233 (485)
..++..+...+...|++++|...+++..+. +..+ ...++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 456788889999999999999999998764 1111 14477788888999999 8888
Q ss_pred HHHHHHHHhcc---C-CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHH
Q 048394 234 ERVFYEMCNEC---E-DKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGI 309 (485)
Q Consensus 234 ~~~~~~~~~~~---~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 309 (485)
...++...... + .+....++..+...|...|++++|...+++..+..+....
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------------------------ 222 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD------------------------ 222 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC------------------------
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC------------------------
Confidence 88887765411 1 1112335566666677777777777776666552111100
Q ss_pred hhhcCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCC-C----CHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q 048394 310 LKSTFPP-TNTSYLVLLQALAKLNAIDILKQCFEEWESRCSS-Y----DMRLADVIIRAYLQKDMYEEAALIFNNAKKRA 383 (485)
Q Consensus 310 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 383 (485)
.. ...++..+...+...|++++|...+++..+.... . ...++..+...|...|++++|...+++..+..
T Consensus 223 -----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 223 -----KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp -----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 00 1223444555555555555555555554432111 0 14466677778888888888888888776542
Q ss_pred cccCC----chhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCc-cHHHHHHHHHHHhhcCChh
Q 048394 384 NASAR----FFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRP-MQVTVDTFFRFFEEEKDVD 446 (485)
Q Consensus 384 ~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 446 (485)
.. .+ ...++..+...|...|++++|...+++..+.....+..+ ...++..+...+...|+..
T Consensus 298 ~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 298 QE-LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred Hh-cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 10 11 144667778888889999999999998877643322222 2445666667777777653
No 55
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.71 E-value=1e-12 Score=128.45 Aligned_cols=415 Identities=8% Similarity=0.005 Sum_probs=293.8
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCC---HHHHHHHHH
Q 048394 59 SVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNG---IAAAEKYFN 135 (485)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~ 135 (485)
+....++.-+.. .|-|...+..++..+.+.+.++.+..+|+.+...- +.+...|...+..-.+.|+ ++.+.++|+
T Consensus 50 d~i~~lE~~l~~-np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 50 DVIGKLNDMIEE-QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp CHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH-CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 333344444443 36799999999999999999999999999998874 5667788888888888888 999999999
Q ss_pred hhcccC---CCHhHHHHHHHHHHhcCcH--------HHHHHHHHHHHh-CCC-CCC-hhhHHHHHHHHHh---------C
Q 048394 136 GLSEYA---KNRYTYGALLNCYCKELMT--------ERALALFEKMDE-LKF-LGN-TVAFNNLSTMYLR---------L 192 (485)
Q Consensus 136 ~~~~~~---~~~~~~~~li~~~~~~~~~--------~~A~~~~~~m~~-~~~-~p~-~~~~~~l~~~~~~---------~ 192 (485)
+..... |++..|...+....+.++. +...++|+.... .|. .|+ ...|...+..... .
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 999944 9999999888766655543 345578887654 455 444 4577777765442 3
Q ss_pred CCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHh-------------cCCHhHHHHHHHHHHhcc-C----CC-------
Q 048394 193 GQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSH-------------LNDIDGVERVFYEMCNEC-E----DK------- 247 (485)
Q Consensus 193 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~~-~----~~------- 247 (485)
++++.+..+|+..+......-..+|......-.. ..+++.|...+.++.... + .+
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~ 287 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT 287 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch
Confidence 3567788899988853211122333222211111 122344555554432200 1 11
Q ss_pred ----C-----c---HHHHHHHHHHHHhcc-------cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHH-HHH
Q 048394 248 ----C-----R---WTTYSNLASIYVKAE-------LFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVN-RVW 307 (485)
Q Consensus 248 ----~-----~---~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~ 307 (485)
| + ...|...+..--..+ ..+.+..+|+++....|.....|...+..+...|+.++|. .+|
T Consensus 288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il 367 (679)
T 4e6h_A 288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYL 367 (679)
T ss_dssp TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1 0 133444444322222 2345667899988888889999999999999999999997 999
Q ss_pred HHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccC---------CC------------CHHhHHHHHHHHHhc
Q 048394 308 GILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCS---------SY------------DMRLADVIIRAYLQK 366 (485)
Q Consensus 308 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~l~~~~~~~ 366 (485)
++.....|.+...+...+....+.|+++.|.++|+.+.+... .| ...+|...+....+.
T Consensus 368 ~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~ 447 (679)
T 4e6h_A 368 KLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI 447 (679)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc
Confidence 999987777888888888889999999999999999876420 13 234688888888888
Q ss_pred CcHHHHHHHHHHHHhc-ccccCCchhHHHHHHHHHHhc-ccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCC
Q 048394 367 DMYEEAALIFNNAKKR-ANASARFFKSRESFMIYYLRS-RQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKD 444 (485)
Q Consensus 367 ~~~~~A~~~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 444 (485)
|+.+.|..+|.++.+. + ......|...+..-.+. ++.+.|..+|+..++. ++.+...|..++......|+
T Consensus 448 ~~l~~AR~vf~~A~~~~~---~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-----~p~~~~~w~~y~~fe~~~~~ 519 (679)
T 4e6h_A 448 QGLAASRKIFGKCRRLKK---LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-----FATDGEYINKYLDFLIYVNE 519 (679)
T ss_dssp HCHHHHHHHHHHHHHTGG---GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-----CCCchHHHHHHHHHHHhCCC
Confidence 9999999999999876 3 22334443333333344 4589999999999998 55677788888888888999
Q ss_pred hhhHHHHHHHHhhcCCC---CHHHHHHHHHHHHHhCCCcchh
Q 048394 445 VDGAEEFCKVLKSLNCL---DFSAYSLLIKTYIAAGKLASDM 483 (485)
Q Consensus 445 ~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~ 483 (485)
.+.|..+|+++++..|+ ....|..++..-.+.|+.+.+.
T Consensus 520 ~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 520 ESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp HHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999998773 5678999999999999887654
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.69 E-value=4.7e-15 Score=130.78 Aligned_cols=248 Identities=13% Similarity=-0.026 Sum_probs=149.8
Q ss_pred CCCcccHHHHHHHHHHcCC---CccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHH
Q 048394 192 LGQPEKVRPLVNQMKQRNI---SLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEK 268 (485)
Q Consensus 192 ~g~~~~a~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 268 (485)
.|++++|+..|+++.+... +.+..++..+...+...|++++|...|+.+.+ ..+.+..++..++.+|...|++++
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHccCHHH
Confidence 4556666666666665421 11344556666666667777777777776666 344556666677777777777777
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcc
Q 048394 269 AELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRC 348 (485)
Q Consensus 269 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 348 (485)
|...++++.+..|.+..++..+..++...|++++|...++++....+.+..... .+..+...|++++|...+.......
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL-WLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHH-HHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 777777777766666677777777777777777777777777666655432222 2233355577777777776666553
Q ss_pred CCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCC-chhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCc
Q 048394 349 SSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASAR-FFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRP 427 (485)
Q Consensus 349 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 427 (485)
.. +...+. ++..+...++.++|...+++..+......| +...+..+...|...|++++|...|++++... +.
T Consensus 175 ~~-~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~ 247 (275)
T 1xnf_A 175 DK-EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-----VH 247 (275)
T ss_dssp CC-CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CT
T ss_pred Cc-chHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----ch
Confidence 32 333333 556666667777777777776654210011 14566677777777788888888887777652 11
Q ss_pred cHHHHHHHHHHHhhcCChhhHHHHH
Q 048394 428 MQVTVDTFFRFFEEEKDVDGAEEFC 452 (485)
Q Consensus 428 ~~~~~~~l~~~~~~~~~~~~A~~~~ 452 (485)
+... ...++...|++++|.+.+
T Consensus 248 ~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 NFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TCHH---HHHHHHHHHHHHHC----
T ss_pred hHHH---HHHHHHHHHHHHhhHHHH
Confidence 2222 234555666777766554
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.69 E-value=1.4e-13 Score=121.18 Aligned_cols=229 Identities=12% Similarity=0.016 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh----cccHHHHHHHHHHHHhcCCCChHHHHH
Q 048394 214 NLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVK----AELFEKAELALKKLEEMKPRDRKAYHF 289 (485)
Q Consensus 214 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 289 (485)
..++..+...+...|++++|.+.|+...+ +.+...+..+...|.. .+++++|...|++..+.. +..++..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHH
Confidence 34455555566666666666666666655 1233455556666666 666666666666665532 4566666
Q ss_pred HHHHHHh----cCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHccCCCCHHhHHHHHH
Q 048394 290 LISLYCN----TSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAK----LNAIDILKQCFEEWESRCSSYDMRLADVIIR 361 (485)
Q Consensus 290 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 361 (485)
+...|.. .+++++|...|++..+.+ +..++..+...|.. .+++++|.+.|++..+.+ +...+..+..
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 6666666 667777777776666543 55666667777776 777777777777777654 4556666777
Q ss_pred HHHh----cCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHh----cccHHHHHHHHHHHHHHhhhcCCCccHHHHH
Q 048394 362 AYLQ----KDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLR----SRQLDLALNEMEAALSEAKQFHWRPMQVTVD 433 (485)
Q Consensus 362 ~~~~----~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 433 (485)
.|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+.++++..+.+ | ...+.
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~-~~a~~ 222 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK-----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE------N-GGGCF 222 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT------C-HHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC------C-HHHHH
Confidence 7776 788888888888877653 23556667777777 888888888888887763 3 55666
Q ss_pred HHHHHHhh----cCChhhHHHHHHHHhhcCCCCHHH
Q 048394 434 TFFRFFEE----EKDVDGAEEFCKVLKSLNCLDFSA 465 (485)
Q Consensus 434 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~ 465 (485)
.+...+.. .+++++|.+.++++.+.+|++...
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACD 258 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 67777777 788888888888888877655433
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.68 E-value=4e-15 Score=141.58 Aligned_cols=211 Identities=12% Similarity=-0.043 Sum_probs=182.3
Q ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCh-hhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 048394 264 ELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNL-DAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFE 342 (485)
Q Consensus 264 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 342 (485)
+.++++...++......+.+...+..+..++...|++ ++|...|++..+..+.+...+..+..+|...|++++|.+.|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3466777777777666777888899999999999999 999999999988888888899999999999999999999999
Q ss_pred HHHHccCCCCHHhHHHHHHHHHhc---------CcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhc--------cc
Q 048394 343 EWESRCSSYDMRLADVIIRAYLQK---------DMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRS--------RQ 405 (485)
Q Consensus 343 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~ 405 (485)
+..+.. |+...+..+...|... |++++|...|++..+.. +.+...|..+...|... |+
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD---VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 988864 5568888888999998 99999999999998874 44567788888888888 99
Q ss_pred HHHHHHHHHHHHHHhhhcCCC---ccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcch
Q 048394 406 LDLALNEMEAALSEAKQFHWR---PMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASD 482 (485)
Q Consensus 406 ~~~A~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 482 (485)
+++|+..|+++++.. + .+...|..+..++...|++++|.+.|+++.+..|.+..++..++.++...|++++|
T Consensus 237 ~~~A~~~~~~al~~~-----p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 237 SQQALSAYAQAEKVD-----RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp HHHHHHHHHHHHHHC-----GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-----CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999873 3 47888899999999999999999999999999999999999999999999999888
Q ss_pred hc
Q 048394 483 MR 484 (485)
Q Consensus 483 ~~ 484 (485)
++
T Consensus 312 i~ 313 (474)
T 4abn_A 312 LE 313 (474)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.68 E-value=1.4e-15 Score=142.64 Aligned_cols=276 Identities=12% Similarity=0.015 Sum_probs=173.3
Q ss_pred hhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccH----HHHHHHHHHHHhcCCHhHHHHHHHHHHhcc----CCCCcHH
Q 048394 180 VAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDN----LTYIVWMQSYSHLNDIDGVERVFYEMCNEC----EDKCRWT 251 (485)
Q Consensus 180 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~ 251 (485)
..+..+...+...|++++|+..|+++.+.+. .+. ..+..+...|...|++++|...+++..+.. ..+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 3445566677778888888888888777532 122 356667777778888888888887766511 1233445
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc------CCCChHHHHHHHHHHHhcCC-----------------hhhHHHHHH
Q 048394 252 TYSNLASIYVKAELFEKAELALKKLEEM------KPRDRKAYHFLISLYCNTSN-----------------LDAVNRVWG 308 (485)
Q Consensus 252 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 308 (485)
++..+...|...|++++|...++++... .+....++..+...|...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 6677777777888888888887777662 22334566777777777777 777777766
Q ss_pred HhhhcC----C-C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCC-CC----HHhHHHHHHHHHhcCcHHHHHHHHH
Q 048394 309 ILKSTF----P-P-TNTSYLVLLQALAKLNAIDILKQCFEEWESRCSS-YD----MRLADVIIRAYLQKDMYEEAALIFN 377 (485)
Q Consensus 309 ~~~~~~----~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~ 377 (485)
+..... . + ...++..+...+...|++++|.+.+++..+.... .+ ..++..+...|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 654321 1 1 3345666666777777777777777766554221 11 1255666667777777777777777
Q ss_pred HHHhcccccCCc-------hhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCc-cHHHHHHHHHHHhhcCChhhHH
Q 048394 378 NAKKRANASARF-------FKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRP-MQVTVDTFFRFFEEEKDVDGAE 449 (485)
Q Consensus 378 ~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 449 (485)
+..+. .+. ..++..+...|...|++++|...+++.+......+..+ ...++..+...+...|++++|.
T Consensus 288 ~al~~----~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 363 (411)
T 4a1s_A 288 RTLAL----AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERAL 363 (411)
T ss_dssp HHHHH----HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHH----HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 76654 443 34555666666777777777777777766643221111 1235556666677777777777
Q ss_pred HHHHHHhhcCC
Q 048394 450 EFCKVLKSLNC 460 (485)
Q Consensus 450 ~~~~~~~~~~~ 460 (485)
..++++.+..+
T Consensus 364 ~~~~~al~~~~ 374 (411)
T 4a1s_A 364 KYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHh
Confidence 77777766543
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.67 E-value=5.3e-15 Score=138.73 Aligned_cols=275 Identities=11% Similarity=-0.026 Sum_probs=220.2
Q ss_pred HhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhCCCcccHHHHHHHHHHc----C-CCccH
Q 048394 144 RYTYGALLNCYCKELMTERALALFEKMDELKFLGNT----VAFNNLSTMYLRLGQPEKVRPLVNQMKQR----N-ISLDN 214 (485)
Q Consensus 144 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~p~~ 214 (485)
...+..+...+...|++++|...|+++.+.+.. +. ..|..+...|...|++++|+..+++..+. + .....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 445666778889999999999999999886533 32 46888999999999999999999999764 1 12345
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhcc---C-CCCcHHHHHHHHHHHHhccc-----------------HHHHHHHH
Q 048394 215 LTYIVWMQSYSHLNDIDGVERVFYEMCNEC---E-DKCRWTTYSNLASIYVKAEL-----------------FEKAELAL 273 (485)
Q Consensus 215 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~-~~~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~ 273 (485)
.++..+...|...|++++|...+++..+.. + .+....++..+..+|...|+ +++|...+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 677888889999999999999999887621 1 23345678889999999999 99999999
Q ss_pred HHHHhcC------CCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC------ChhhHHHHHHHHHhcCChhHHHHHH
Q 048394 274 KKLEEMK------PRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP------TNTSYLVLLQALAKLNAIDILKQCF 341 (485)
Q Consensus 274 ~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~ 341 (485)
++..+.. +....++..+...|...|++++|...+++.....+. ....+..+...+...|++++|.+.+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 9877621 123457888999999999999999999988765443 2237888999999999999999999
Q ss_pred HHHHHccCCCC-----HHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCc----hhHHHHHHHHHHhcccHHHHHHH
Q 048394 342 EEWESRCSSYD-----MRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARF----FKSRESFMIYYLRSRQLDLALNE 412 (485)
Q Consensus 342 ~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~ 412 (485)
++..+...... ..++..+...|...|++++|...+++..+.... .++ ..++..+...|...|++++|...
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE-LGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 99988755321 567788999999999999999999998876320 112 23677888899999999999999
Q ss_pred HHHHHHHh
Q 048394 413 MEAALSEA 420 (485)
Q Consensus 413 ~~~~~~~~ 420 (485)
+++..+..
T Consensus 366 ~~~al~~~ 373 (411)
T 4a1s_A 366 AEQHLQLA 373 (411)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99999873
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.67 E-value=9.2e-14 Score=124.61 Aligned_cols=185 Identities=9% Similarity=0.032 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHhcCChhhHHHHHHH
Q 048394 231 DGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRK-AYHFLISLYCNTSNLDAVNRVWGI 309 (485)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~ 309 (485)
++|..+|++..+ .-.+.+...|..++..+.+.|++++|..+|+++.+..|.+.. +|..++..+.+.|++++|..+|++
T Consensus 81 ~~A~~~~~rAl~-~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 81 DEAANIYERAIS-TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHT-TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 455555555544 112333444455555555555555555555555554443333 455555555555555555555555
Q ss_pred hhhcCCCChhhHHHHHHHHH-hcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcc-cccC
Q 048394 310 LKSTFPPTNTSYLVLLQALA-KLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRA-NASA 387 (485)
Q Consensus 310 ~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 387 (485)
..+..+.+...|...+.... ..|+.++|.++|+...+..+. +...|..++..+.+.|++++|..+|++..... . .
T Consensus 160 a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l--~ 236 (308)
T 2ond_A 160 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL--P 236 (308)
T ss_dssp HHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS--C
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC--C
Confidence 55444433333332222211 135555555555555444332 44445555555555555555555555554431 1 2
Q ss_pred C--chhHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 048394 388 R--FFKSRESFMIYYLRSRQLDLALNEMEAALSE 419 (485)
Q Consensus 388 p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 419 (485)
| ....|..++..+.+.|+.++|..+++++.+.
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 2334444444444555555555555555544
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.66 E-value=9e-14 Score=124.65 Aligned_cols=222 Identities=10% Similarity=0.001 Sum_probs=135.5
Q ss_pred hHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh-------cccH-------HHHHHHHHHHHh-cCCCChHHHHHHHHHHH
Q 048394 231 DGVERVFYEMCNECEDKCRWTTYSNLASIYVK-------AELF-------EKAELALKKLEE-MKPRDRKAYHFLISLYC 295 (485)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~ 295 (485)
++|..+|+++.. ..+.+...|..++..+.. .|++ ++|..+|++... ..|.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~--~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLL--VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 445555555555 344445555555544432 3543 677777777776 46666667777777777
Q ss_pred hcCChhhHHHHHHHhhhcCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHH-hcCcHHHHH
Q 048394 296 NTSNLDAVNRVWGILKSTFPPTNT-SYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYL-QKDMYEEAA 373 (485)
Q Consensus 296 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~ 373 (485)
..|++++|..+|+++.+..+.+.. .|..++..+.+.|++++|..+|++..+..+. +...|...+.... ..|++++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHHH
Confidence 777777777777777665555443 6666777777777777777777777665432 3444443333221 257777777
Q ss_pred HHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCc--cHHHHHHHHHHHhhcCChhhHHHH
Q 048394 374 LIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRP--MQVTVDTFFRFFEEEKDVDGAEEF 451 (485)
Q Consensus 374 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~ 451 (485)
.+|++..+.. +.+...|..++..+.+.|++++|..+|++++... ..+| ....|..++....+.|+.+.|..+
T Consensus 190 ~~~~~al~~~---p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 190 KIFELGLKKY---GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG---SLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHH---TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS---SSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHhC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777766653 3345566666666677777777777777776641 0233 345666666666667777777777
Q ss_pred HHHHhhcCCC
Q 048394 452 CKVLKSLNCL 461 (485)
Q Consensus 452 ~~~~~~~~~~ 461 (485)
++++.+..|.
T Consensus 264 ~~~a~~~~p~ 273 (308)
T 2ond_A 264 EKRRFTAFRE 273 (308)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHccc
Confidence 7777776665
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.66 E-value=9.7e-15 Score=132.66 Aligned_cols=281 Identities=12% Similarity=0.027 Sum_probs=134.7
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhCCCcccHHHHHHHHHHc----CCCc-cHHHHHH
Q 048394 149 ALLNCYCKELMTERALALFEKMDELKFLGN----TVAFNNLSTMYLRLGQPEKVRPLVNQMKQR----NISL-DNLTYIV 219 (485)
Q Consensus 149 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~ 219 (485)
.....+...|++++|...|+++.+.... + ...+..+...+...|++++|.+.+++..+. +..| ...++..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3444555566666666666666554321 1 234555555666666666666666554432 1111 1334555
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhccCCCCc----HHHHHHHHHHHHhccc--------------------HHHHHHHHHH
Q 048394 220 WMQSYSHLNDIDGVERVFYEMCNECEDKCR----WTTYSNLASIYVKAEL--------------------FEKAELALKK 275 (485)
Q Consensus 220 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~ 275 (485)
+...+...|++++|...+++..+.....++ ..++..+...|...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 566666666666666666665441111111 2355566666666666 6666666655
Q ss_pred HHhc------CCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccC
Q 048394 276 LEEM------KPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCS 349 (485)
Q Consensus 276 ~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 349 (485)
.... .+....++..+...+...|++++|...+++.....+.... .
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----------------------------~ 219 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-----------------------------K 219 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-----------------------------H
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-----------------------------h
Confidence 4431 0011223444444445555555555544443322111000 0
Q ss_pred CCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhccccc---CCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCC
Q 048394 350 SYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANAS---ARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWR 426 (485)
Q Consensus 350 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 426 (485)
.....++..+...+...|++++|...+++..+..... .....++..+...|...|++++|...++++.......+..
T Consensus 220 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 299 (338)
T 3ro2_A 220 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 299 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc
Confidence 0012244445555555555555555555544321000 0012344555555566666666666665555443222122
Q ss_pred c-cHHHHHHHHHHHhhcCChhhHHHHHHHHhhcC
Q 048394 427 P-MQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLN 459 (485)
Q Consensus 427 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 459 (485)
+ ...++..+...+...|++++|...++++.+..
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 2 24455555666666666666666666665543
No 64
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.66 E-value=2.8e-13 Score=119.30 Aligned_cols=216 Identities=12% Similarity=-0.020 Sum_probs=189.8
Q ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh----cCChhhHHHHHHHhhhcCCCChhhHHH
Q 048394 248 CRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCN----TSNLDAVNRVWGILKSTFPPTNTSYLV 323 (485)
Q Consensus 248 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 323 (485)
-+..++..+...|...|++++|...|++..+ +.+..++..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~ 79 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHL 79 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHH
Confidence 4567778899999999999999999999887 5567889999999999 999999999999998775 6788889
Q ss_pred HHHHHHh----cCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHh----cCcHHHHHHHHHHHHhcccccCCchhHHHH
Q 048394 324 LLQALAK----LNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQ----KDMYEEAALIFNNAKKRANASARFFKSRES 395 (485)
Q Consensus 324 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~ 395 (485)
+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~ 151 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-----DGDGCTI 151 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----CHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-----cHHHHHH
Confidence 9999999 999999999999998874 77888889999999 999999999999999864 3456677
Q ss_pred HHHHHHh----cccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhh----cCChhhHHHHHHHHhhcCCCCHHHHH
Q 048394 396 FMIYYLR----SRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEE----EKDVDGAEEFCKVLKSLNCLDFSAYS 467 (485)
Q Consensus 396 l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 467 (485)
+...|.. .+++++|+.+|++..+.+ +...+..+...+.. .+++++|...++++.+.++ +.++.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~ 222 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK-------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCF 222 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHH
Confidence 7788887 999999999999998863 45777888888988 9999999999999999765 78899
Q ss_pred HHHHHHHH----hCCCcchhc
Q 048394 468 LLIKTYIA----AGKLASDMR 484 (485)
Q Consensus 468 ~l~~~~~~----~g~~~~A~~ 484 (485)
.++.+|.. .+++++|++
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~ 243 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIE 243 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHH
T ss_pred HHHHHHHcCCCcccCHHHHHH
Confidence 99999999 999999874
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.66 E-value=4.4e-15 Score=134.96 Aligned_cols=261 Identities=13% Similarity=0.000 Sum_probs=163.6
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhccCCCCc----HHHHHHHHHHHHhcccHHHHHHHHHHHHhc------CCCChHHHHHH
Q 048394 221 MQSYSHLNDIDGVERVFYEMCNECEDKCR----WTTYSNLASIYVKAELFEKAELALKKLEEM------KPRDRKAYHFL 290 (485)
Q Consensus 221 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l 290 (485)
...+...|++++|...|+++.+. .+.+ ...+..+...|...|++++|...++++... .+....++..+
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 33444455555555555555441 1112 234444555555555555555555544431 11123445555
Q ss_pred HHHHHhcCChhhHHHHHHHhhhcCCC------ChhhHHHHHHHHHhcCC--------------------hhHHHHHHHHH
Q 048394 291 ISLYCNTSNLDAVNRVWGILKSTFPP------TNTSYLVLLQALAKLNA--------------------IDILKQCFEEW 344 (485)
Q Consensus 291 ~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~ 344 (485)
...+...|++++|...+++.....+. ...++..+...+...|+ +++|.+.+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 55555556666655555554432211 12355556666666666 67777666665
Q ss_pred HHc----cCC-CCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCC----chhHHHHHHHHHHhcccHHHHHHHHHH
Q 048394 345 ESR----CSS-YDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASAR----FFKSRESFMIYYLRSRQLDLALNEMEA 415 (485)
Q Consensus 345 ~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 415 (485)
.+. +.. ....++..+...+...|++++|...+++..+.... .+ ...++..+...+...|++++|...+++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-FGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 432 111 12446777888899999999999999988754210 11 123677888889999999999999999
Q ss_pred HHHHhhhcCCCc-cHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCC------CHHHHHHHHHHHHHhCCCcchhc
Q 048394 416 ALSEAKQFHWRP-MQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCL------DFSAYSLLIKTYIAAGKLASDMR 484 (485)
Q Consensus 416 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~ 484 (485)
........+..+ ...++..+...+...|++++|...++++.+..+. ...++..++.+|.+.|++++|++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 987653221111 1557778889999999999999999999886432 25688999999999999999874
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.65 E-value=6.3e-14 Score=115.39 Aligned_cols=165 Identities=13% Similarity=0.054 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 048394 250 WTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALA 329 (485)
Q Consensus 250 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 329 (485)
..+|..++.+|...|++++|+..|++..+..|.+..++..+..+|...|++++|...+.......+.+...+..+...+.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555555555555555554444444445555555
Q ss_pred hcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHH
Q 048394 330 KLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLA 409 (485)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 409 (485)
..++++.|...+.+..+..+. +...+..+...|...|++++|...|++..+.+ +.+..+|..+...|.+.|++++|
T Consensus 85 ~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK---PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc---chhhhHHHHHHHHHHHCCCHHHH
Confidence 555555555555554444332 34444444555555555555555555544442 22334444444445555555555
Q ss_pred HHHHHHHHH
Q 048394 410 LNEMEAALS 418 (485)
Q Consensus 410 ~~~~~~~~~ 418 (485)
+..|+++++
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555444
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.64 E-value=2.6e-14 Score=132.65 Aligned_cols=298 Identities=7% Similarity=0.010 Sum_probs=197.7
Q ss_pred HHhcCcHHHHHHHHHHHHhCC--C--CCChhhHHHHHHH--HHhCCCcccHH-----------HHHHHHHHcCCCccHHH
Q 048394 154 YCKELMTERALALFEKMDELK--F--LGNTVAFNNLSTM--YLRLGQPEKVR-----------PLVNQMKQRNISLDNLT 216 (485)
Q Consensus 154 ~~~~~~~~~A~~~~~~m~~~~--~--~p~~~~~~~l~~~--~~~~g~~~~a~-----------~~~~~~~~~~~~p~~~~ 216 (485)
+.+.+++++|..+++++.+.- . .++...|-.++.. ....++++.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 457899999999998886531 2 2233333444332 22334455555 7777766532 22222
Q ss_pred HHH------HHHHHHhcCCHhHHHHHHHHHHhccCCCC----cHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC--C--
Q 048394 217 YIV------WMQSYSHLNDIDGVERVFYEMCNECEDKC----RWTTYSNLASIYVKAELFEKAELALKKLEEMKP--R-- 282 (485)
Q Consensus 217 ~~~------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~-- 282 (485)
+.. ....+...|++++|...+++..+.....+ ...++..+..+|...|++++|...+.+..+..+ +
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 222 44566788999999999988876211112 346778888888899999999999888887211 1
Q ss_pred ---ChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHc----cC
Q 048394 283 ---DRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP------TNTSYLVLLQALAKLNAIDILKQCFEEWESR----CS 349 (485)
Q Consensus 283 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~ 349 (485)
...+++.+...|...|++++|...+++.....+. ...++..+...|...|++++|.+.+++..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 1356778888888889999998888877654322 2346778888888888888888888887762 22
Q ss_pred -CCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhccccc-CC-chhHHHHHHHHHHhccc---HHHHHHHHHHHHHHhhhc
Q 048394 350 -SYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANAS-AR-FFKSRESFMIYYLRSRQ---LDLALNEMEAALSEAKQF 423 (485)
Q Consensus 350 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~ 423 (485)
.....++..+...|...|++++|...+++..+..... .| ....+..+...|...|+ +++|+.++++...
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~----- 334 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML----- 334 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC-----
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC-----
Confidence 2235677778888888888888888888877652100 11 12234556666777787 6777777766522
Q ss_pred CCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcC
Q 048394 424 HWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLN 459 (485)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 459 (485)
.+.....+..+...|...|++++|...++++.+..
T Consensus 335 -~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 335 -YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 12334566677788888888888888888887643
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.63 E-value=1.2e-13 Score=113.79 Aligned_cols=167 Identities=20% Similarity=0.146 Sum_probs=136.4
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 048394 213 DNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLIS 292 (485)
Q Consensus 213 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 292 (485)
+..+|..+...|...|++++|++.|++..+ ..|.+..++..++.+|.+.|++++|...+..+....|.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 456777788888888888888888888877 566677788888888888888888888888888877777888888888
Q ss_pred HHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHH
Q 048394 293 LYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEA 372 (485)
Q Consensus 293 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 372 (485)
.+...++++.+...+.+.....+.+...+..+...+.+.|++++|++.|++..+..+. +..+|..+..+|.+.|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHH
Confidence 8888888888888888888877777888888888888888888888888888877655 677788888888888888888
Q ss_pred HHHHHHHHhc
Q 048394 373 ALIFNNAKKR 382 (485)
Q Consensus 373 ~~~~~~~~~~ 382 (485)
...|++.++.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 8888888775
No 69
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.63 E-value=4.2e-14 Score=133.66 Aligned_cols=371 Identities=11% Similarity=-0.003 Sum_probs=243.4
Q ss_pred CcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhC-----CHHH
Q 048394 58 GSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRY---RHALEVIEWMESRKMHFSYTDFAVYLDLTAKTN-----GIAA 129 (485)
Q Consensus 58 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~ 129 (485)
++..+++..+.+.-..-++..+..+...+...|++ ++|++.|+...+. +...+..+...+...+ ++++
T Consensus 17 g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~ 92 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHE 92 (452)
T ss_dssp HHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHH
Confidence 34444444443321112344555566666667777 8999999988754 4455556666454444 7889
Q ss_pred HHHHHHhhcccCCCHhHHHHHHHHHHhcCcHH---HHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHH
Q 048394 130 AEKYFNGLSEYAKNRYTYGALLNCYCKELMTE---RALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMK 206 (485)
Q Consensus 130 a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~---~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 206 (485)
|.++|++..+. -+...+..|...|...+..+ ++.+.+.+....| +...+..+...|...+.++++......+.
T Consensus 93 A~~~~~~Aa~~-g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~ 168 (452)
T 3e4b_A 93 AESLLKKAFAN-GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERIC 168 (452)
T ss_dssp HHHHHHHHHHT-TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence 99999998872 22337777888887766544 3455555555544 45678888888988887777766654444
Q ss_pred HcCCCccHHHHHHHHHHHHhcC---CHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhc----ccHHHHHHHHHHHHhc
Q 048394 207 QRNISLDNLTYIVWMQSYSHLN---DIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKA----ELFEKAELALKKLEEM 279 (485)
Q Consensus 207 ~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~ 279 (485)
+.-...+...+..+...|...| +.++|++.|+...+ ..+++...+..+...|... +++++|...|++..
T Consensus 169 ~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~--~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-- 244 (452)
T 3e4b_A 169 KAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVS--RGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-- 244 (452)
T ss_dssp HHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--TTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG--
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc--
Confidence 3322234447788888999999 99999999999988 5566777666788888665 69999999999986
Q ss_pred CCCChHHHHHHHHH-H--HhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcC-----ChhHHHHHHHHHHHccCCC
Q 048394 280 KPRDRKAYHFLISL-Y--CNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLN-----AIDILKQCFEEWESRCSSY 351 (485)
Q Consensus 280 ~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~ 351 (485)
+.++..+..+... + ...+++++|...|++..+.+ +...+..+...|. .| +.++|.+.|++.. .|
T Consensus 245 -~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g--- 316 (452)
T 3e4b_A 245 -PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR--- 316 (452)
T ss_dssp -GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---
T ss_pred -CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---
Confidence 6678888888887 4 56899999999999988765 5777778888887 45 9999999999887 32
Q ss_pred CHHhHHHHHHHHHh----cCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHh----cccHHHHHHHHHHHHHHhhhc
Q 048394 352 DMRLADVIIRAYLQ----KDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLR----SRQLDLALNEMEAALSEAKQF 423 (485)
Q Consensus 352 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~ 423 (485)
++..+..|...|.. ..++++|...|++..+.|. | .....|...|.. ..+.++|..+|+...+.|
T Consensus 317 ~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~--~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g--- 388 (452)
T 3e4b_A 317 EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---N--SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD--- 388 (452)
T ss_dssp CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---T--THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC---
T ss_pred CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC---
Confidence 67777778888876 4499999999999998763 3 344456556653 468999999999999885
Q ss_pred CCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 048394 424 HWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSL 458 (485)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 458 (485)
. ++.......+......++..+|.++.++..+.
T Consensus 389 -~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 389 -T-PEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp -C-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred -C-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 2 33333333333334445677777777766553
No 70
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.61 E-value=2.5e-11 Score=118.64 Aligned_cols=384 Identities=7% Similarity=-0.038 Sum_probs=270.1
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcc-cCCCHhHHHHHHHHHHhcCc---HHHHHHHH
Q 048394 92 YRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE-YAKNRYTYGALLNCYCKELM---TERALALF 167 (485)
Q Consensus 92 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~---~~~A~~~~ 167 (485)
..+.+..|+.....+ +-|...|..++..+.+.+.++.+..+|+++.. .+.....|...+..-.+.++ ++.+..+|
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 444555666665655 46899999999999999999999999999999 66778899999999889999 99999999
Q ss_pred HHHHhCCC-CCChhhHHHHHHHHHhCCCc--------ccHHHHHHHHHHc-CC-Ccc-HHHHHHHHHHHH---------h
Q 048394 168 EKMDELKF-LGNTVAFNNLSTMYLRLGQP--------EKVRPLVNQMKQR-NI-SLD-NLTYIVWMQSYS---------H 226 (485)
Q Consensus 168 ~~m~~~~~-~p~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~~-~~-~p~-~~~~~~l~~~~~---------~ 226 (485)
++...... .|++..|...+....+.++. +.+.++|+..... |. .|+ ...|...+.... .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 99988642 37888888888766665544 3345778776653 65 554 467777776543 2
Q ss_pred cCCHhHHHHHHHHHHhccCCCCcHHHH---HHHHHHH----------HhcccHHHHHHHHHHHHh----c---CCC----
Q 048394 227 LNDIDGVERVFYEMCNECEDKCRWTTY---SNLASIY----------VKAELFEKAELALKKLEE----M---KPR---- 282 (485)
Q Consensus 227 ~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~l~~~~----------~~~~~~~~A~~~~~~~~~----~---~~~---- 282 (485)
.++++.+.++|+.+.. ........+| ..+...+ -...+++.|...+..+.. . .|.
T Consensus 207 q~~~~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HhHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 4457889999999886 2111122233 2222111 012345556666655443 1 111
Q ss_pred ---------C------hHHHHHHHHHHHhcC-------ChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHH-H
Q 048394 283 ---------D------RKAYHFLISLYCNTS-------NLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILK-Q 339 (485)
Q Consensus 283 ---------~------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~ 339 (485)
+ ...|...+..--..+ ..+.+..+|++.....+.....|...+..+...|+.++|. +
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 0 134555555433332 1234567899998888889999999999999999999996 9
Q ss_pred HHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhccc-------ccCCc------------hhHHHHHHHHH
Q 048394 340 CFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRAN-------ASARF------------FKSRESFMIYY 400 (485)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~p~------------~~~~~~l~~~~ 400 (485)
+|+......+ .+...|-..+....+.|++++|..+|+++..... ...|+ ...|...+...
T Consensus 366 il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 366 YLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 9999987644 3677788888889999999999999999886410 00132 23677778877
Q ss_pred HhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhc-CChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCC
Q 048394 401 LRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEE-KDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKL 479 (485)
Q Consensus 401 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 479 (485)
.+.|+.+.|..+|.++++.. ..+....|...+..-.+. ++.+.|.++|+..++..|.++..|..++......|+.
T Consensus 445 rR~~~l~~AR~vf~~A~~~~----~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLK----KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEE 520 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTG----GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCH
T ss_pred HHcCCHHHHHHHHHHHHHhc----CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCH
Confidence 88999999999999998761 112344454443333343 5599999999999999999999999999999888887
Q ss_pred cch
Q 048394 480 ASD 482 (485)
Q Consensus 480 ~~A 482 (485)
+.|
T Consensus 521 ~~A 523 (679)
T 4e6h_A 521 SQV 523 (679)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.61 E-value=1.8e-13 Score=127.00 Aligned_cols=232 Identities=10% Similarity=0.024 Sum_probs=143.9
Q ss_pred HHHHHHhCCCcccHHHHHHHHHHc----CCCc-cHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCC-----cHHHHH
Q 048394 185 LSTMYLRLGQPEKVRPLVNQMKQR----NISL-DNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKC-----RWTTYS 254 (485)
Q Consensus 185 l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ 254 (485)
....+...|++++|+..|++..+. +-.+ ...++..+...|...|+++.|...+++..+.....+ ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 334445556666666666655542 1111 234455556666666666666666665554111111 234566
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCC--CC----hHHHHHHHHHHHhcCChhhHHHHHHHhhh-----cCCC-ChhhHH
Q 048394 255 NLASIYVKAELFEKAELALKKLEEMKP--RD----RKAYHFLISLYCNTSNLDAVNRVWGILKS-----TFPP-TNTSYL 322 (485)
Q Consensus 255 ~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~-~~~~~~ 322 (485)
.+..+|...|++++|...+++..+..+ ++ ..++..+..+|...|++++|...+++... ...+ ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 667777777777777777777665211 11 24666777777777777777777777666 3313 566677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHccC---CC-CHHhHHHHHHHHHhcCc---HHHHHHHHHHHHhcccccCCchhHHHH
Q 048394 323 VLLQALAKLNAIDILKQCFEEWESRCS---SY-DMRLADVIIRAYLQKDM---YEEAALIFNNAKKRANASARFFKSRES 395 (485)
Q Consensus 323 ~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~-~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~p~~~~~~~ 395 (485)
.+...+.+.|++++|...+++..+... .| ....+..+...|...|+ +++|..++++.... ......+..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~----~~~~~~~~~ 344 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY----ADLEDFAID 344 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCH----HHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCH----HHHHHHHHH
Confidence 778888888888888888877655321 11 12335667777888888 77777777665211 223345667
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHHh
Q 048394 396 FMIYYLRSRQLDLALNEMEAALSEA 420 (485)
Q Consensus 396 l~~~~~~~g~~~~A~~~~~~~~~~~ 420 (485)
+...|...|++++|...+++..+..
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 8888889999999999999887764
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.60 E-value=7.1e-14 Score=132.96 Aligned_cols=193 Identities=11% Similarity=0.004 Sum_probs=88.5
Q ss_pred cHHHHHHHHHHHHhcCCH-hHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHH
Q 048394 213 DNLTYIVWMQSYSHLNDI-DGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLI 291 (485)
Q Consensus 213 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 291 (485)
+...+..+...+...|++ ++|++.|++..+ ..+.+...+..+..+|...|++++|...|+++.+..|. ...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHH
Confidence 344444444555555555 555555555544 23334445555555555555555555555555544332 44445555
Q ss_pred HHHHhc---------CChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhc--------CChhHHHHHHHHHHHccCC--CC
Q 048394 292 SLYCNT---------SNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKL--------NAIDILKQCFEEWESRCSS--YD 352 (485)
Q Consensus 292 ~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~--~~ 352 (485)
.++... |++++|...+++..+..+.+...+..+..+|... |++++|.+.|++..+..+. -+
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 257 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN 257 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC
Confidence 555554 4445555555544444444444444444444444 4444444444444443220 13
Q ss_pred HHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHH
Q 048394 353 MRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALN 411 (485)
Q Consensus 353 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 411 (485)
...|..+..+|...|++++|...|++..+.. +.+...+..+...+...|++++|+.
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAALD---PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444432 1222233334444444444444443
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.58 E-value=2.8e-14 Score=128.19 Aligned_cols=241 Identities=10% Similarity=0.058 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhcc------CCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------C
Q 048394 215 LTYIVWMQSYSHLNDIDGVERVFYEMCNEC------EDKCRWTTYSNLASIYVKAELFEKAELALKKLEEM--------K 280 (485)
Q Consensus 215 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~ 280 (485)
.++..+...+...|++++|..+++++.+.. ..+....++..+..+|...|++++|...++++... .
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 334444444445555555555554444310 12223344444555555555555555555554442 1
Q ss_pred CCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcC-------CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHc-----
Q 048394 281 PRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTF-------PP-TNTSYLVLLQALAKLNAIDILKQCFEEWESR----- 347 (485)
Q Consensus 281 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 347 (485)
+....++..+...|...|++++|...++++.... .+ ....+..+...+...|++++|.+.++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 2223445555555556666666665555554431 11 4455666666677777777777777766553
Q ss_pred -cCCC-CHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-----cCCch-h------HHHHHHHHHHhcccHHHHHHHH
Q 048394 348 -CSSY-DMRLADVIIRAYLQKDMYEEAALIFNNAKKRANA-----SARFF-K------SRESFMIYYLRSRQLDLALNEM 413 (485)
Q Consensus 348 -~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~p~~-~------~~~~l~~~~~~~g~~~~A~~~~ 413 (485)
+..| ...++..+...|...|++++|...++++.+.... ..+.. . .+..+...+...+.+.++...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 1111 2445666777777778888888777777653100 01111 1 1122223334455666666677
Q ss_pred HHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCC
Q 048394 414 EAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNC 460 (485)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 460 (485)
+..... .+....++..+..+|.+.|++++|.++++++.+..|
T Consensus 268 ~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 268 KACKVD-----SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred hhcCCC-----CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 776654 344567788888889999999999999998887655
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.58 E-value=2.5e-14 Score=128.54 Aligned_cols=238 Identities=13% Similarity=0.065 Sum_probs=175.5
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhc----
Q 048394 246 DKCRWTTYSNLASIYVKAELFEKAELALKKLEEM--------KPRDRKAYHFLISLYCNTSNLDAVNRVWGILKST---- 313 (485)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 313 (485)
.+....++..+...+...|++++|...++++.+. .+....++..+...|...|++++|...++++...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4455678889999999999999999999998872 3445678889999999999999999999988765
Q ss_pred --C-CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcc------CCC-CHHhHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 048394 314 --F-PP-TNTSYLVLLQALAKLNAIDILKQCFEEWESRC------SSY-DMRLADVIIRAYLQKDMYEEAALIFNNAKKR 382 (485)
Q Consensus 314 --~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 382 (485)
. .+ ...++..+...+...|++++|.+.++++.+.. ..| ....+..+...+...|++++|..+++++.+.
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 22 67788999999999999999999999987652 122 3567888999999999999999999998775
Q ss_pred ------ccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc---CCCc-------cHHHHHHHHHHHhhcCChh
Q 048394 383 ------ANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQF---HWRP-------MQVTVDTFFRFFEEEKDVD 446 (485)
Q Consensus 383 ------~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~-------~~~~~~~l~~~~~~~~~~~ 446 (485)
+. ......++..+...|...|++++|...++++.+..... ...+ ....+..+...+...+.+.
T Consensus 183 ~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (311)
T 3nf1_A 183 YQTKLGPD-DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFG 261 (311)
T ss_dssp HHHTSCTT-CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSC
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHH
Confidence 11 02234567888899999999999999999998753111 0111 1223333445556677788
Q ss_pred hHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcchhc
Q 048394 447 GAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDMR 484 (485)
Q Consensus 447 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 484 (485)
+|...++......|....++..++.+|.+.|++++|++
T Consensus 262 ~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 299 (311)
T 3nf1_A 262 EYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAET 299 (311)
T ss_dssp CCC---------CHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHH
Confidence 88888998888888899999999999999999999974
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.57 E-value=6.4e-12 Score=116.22 Aligned_cols=232 Identities=8% Similarity=-0.035 Sum_probs=166.3
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhccCCCC----cHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC--C-----ChHHHH
Q 048394 220 WMQSYSHLNDIDGVERVFYEMCNECEDKC----RWTTYSNLASIYVKAELFEKAELALKKLEEMKP--R-----DRKAYH 288 (485)
Q Consensus 220 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~-----~~~~~~ 288 (485)
....+...|++++|...|++..+.....+ ...++..+..+|...|+++.|...+++..+..+ + ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456778899999999988876222222 345677888888899999999988888877211 1 245677
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhhcC----CC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHH-----ccCCCCHHhHH
Q 048394 289 FLISLYCNTSNLDAVNRVWGILKSTF----PP--TNTSYLVLLQALAKLNAIDILKQCFEEWES-----RCSSYDMRLAD 357 (485)
Q Consensus 289 ~l~~~~~~~~~~~~a~~~~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 357 (485)
.+..+|...|++++|...+++..+.. .+ ...++..+..+|...|++++|.+.+++..+ ..+. ...++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHH
Confidence 88888999999999998888776532 11 345678888899999999999999998876 4333 367788
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcccc--cCCchhHHHHHHHHHHhccc---HHHHHHHHHHHHHHhhhcCCCccHHHH
Q 048394 358 VIIRAYLQKDMYEEAALIFNNAKKRANA--SARFFKSRESFMIYYLRSRQ---LDLALNEMEAALSEAKQFHWRPMQVTV 432 (485)
Q Consensus 358 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~ 432 (485)
.+..+|.+.|++++|...+++..+.... .......+..+...|...|+ +.+|+..+++... .+.....+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~------~~~~~~~~ 339 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL------HAYIEACA 339 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC------HHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC------hhHHHHHH
Confidence 8889999999999999999988765210 01122334555555666777 7777777776321 22334566
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHhhc
Q 048394 433 DTFFRFFEEEKDVDGAEEFCKVLKSL 458 (485)
Q Consensus 433 ~~l~~~~~~~~~~~~A~~~~~~~~~~ 458 (485)
..+...|...|++++|...++++.+.
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 77888999999999999999988764
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.56 E-value=1.3e-11 Score=114.04 Aligned_cols=303 Identities=13% Similarity=0.011 Sum_probs=194.5
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChh----hHHHHHHHHHhCCCcccHHHHHHHHHHcCC-Ccc----HHH
Q 048394 146 TYGALLNCYCKELMTERALALFEKMDELKFLGNTV----AFNNLSTMYLRLGQPEKVRPLVNQMKQRNI-SLD----NLT 216 (485)
Q Consensus 146 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~ 216 (485)
........+...|++++|...+++........+.. +++.+...+...|++++|.+.+++.....- .++ ..+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34444556677899999999999887754322221 456666778888999999988888765310 111 223
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhcc---CCC--C-cHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-----ChH
Q 048394 217 YIVWMQSYSHLNDIDGVERVFYEMCNEC---EDK--C-RWTTYSNLASIYVKAELFEKAELALKKLEEMKPR-----DRK 285 (485)
Q Consensus 217 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~ 285 (485)
+..+...+...|++++|...+++..... +.+ | ....+..+...+...|++++|...+++.....+. ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 4556677888899999988888776521 221 2 3445666788888888899988888888773331 234
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhhcCCC--ChhhHH-----HHHHHHHhcCChhHHHHHHHHHHHccCCCC---HHh
Q 048394 286 AYHFLISLYCNTSNLDAVNRVWGILKSTFPP--TNTSYL-----VLLQALAKLNAIDILKQCFEEWESRCSSYD---MRL 355 (485)
Q Consensus 286 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~ 355 (485)
++..+...+...|++++|...+++....... ....+. ..+..+...|+.++|...++........+. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 5677778888888888888888877654222 211121 233446678888888888877765433211 224
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcccccCC---ch-hHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHH
Q 048394 356 ADVIIRAYLQKDMYEEAALIFNNAKKRANASAR---FF-KSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVT 431 (485)
Q Consensus 356 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p---~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 431 (485)
+..+...+...|++++|...+++....... .+ +. ..+..+..++...|+.++|...+++........
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~-------- 326 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARS-LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT-------- 326 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccc--------
Confidence 556777788888888888888887665320 11 11 245555666778888888888888887764111
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHhhcCCC
Q 048394 432 VDTFFRFFEEEKDVDGAEEFCKVLKSLNCL 461 (485)
Q Consensus 432 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 461 (485)
..+..+...| +....+++.+....|.
T Consensus 327 --g~~~~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 327 --GFISHFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp --CCCHHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred --cHHHHHHHcc--HHHHHHHHHHHhCCCC
Confidence 1223333444 5566677777776664
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.54 E-value=4.4e-12 Score=108.25 Aligned_cols=209 Identities=8% Similarity=-0.062 Sum_probs=148.7
Q ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHH
Q 048394 248 CRWTTYSNLASIYVKAELFEKAELALKKLEEMKP-RDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQ 326 (485)
Q Consensus 248 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 326 (485)
.++..+...+..+...|++++|...|++..+..| ++...+..+..++...|++++|...+++.....+.+...+..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 3456666677777777777777777777777555 666777777777777777777777777777777767777777777
Q ss_pred HHHhcCChhHHHHHHHHHHHccCCCCH-------HhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCc---hhHHHHH
Q 048394 327 ALAKLNAIDILKQCFEEWESRCSSYDM-------RLADVIIRAYLQKDMYEEAALIFNNAKKRANASARF---FKSRESF 396 (485)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~---~~~~~~l 396 (485)
.+...|++++|.+.+++..+..+. +. ..|..+...+...|++++|...|++..+. .|+ ...|..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV----TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----SCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc----CCCcccHHHHHHH
Confidence 777788888888888777776443 34 45777778888889999999999988876 443 4566666
Q ss_pred HHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 048394 397 MIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTY 473 (485)
Q Consensus 397 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 473 (485)
...|...|+ ..++++... ...+...+.... ....+.+++|...++++.+..|.++.+...+..+.
T Consensus 160 ~~~~~~~~~-----~~~~~a~~~-----~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGA-----DVLRKATPL-----ASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHH-----HHHHHHGGG-----TTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHhc-----ccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 666655543 344555444 223344444333 33456789999999999999999998888877654
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.54 E-value=1.3e-12 Score=120.90 Aligned_cols=228 Identities=10% Similarity=-0.031 Sum_probs=175.0
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC--CC----ChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC-------Chh
Q 048394 253 YSNLASIYVKAELFEKAELALKKLEEMK--PR----DRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP-------TNT 319 (485)
Q Consensus 253 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~ 319 (485)
+...+..+...|++++|...++++.... .+ ...++..+...|...|+++.|...+.+....... ...
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 3445667788999999999999998721 12 3567888999999999999999999987764322 345
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHccC--C---CCHHhHHHHHHHHHhcCcHHHHHHHHHHHHh-----cccccCCc
Q 048394 320 SYLVLLQALAKLNAIDILKQCFEEWESRCS--S---YDMRLADVIIRAYLQKDMYEEAALIFNNAKK-----RANASARF 389 (485)
Q Consensus 320 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~p~ 389 (485)
+++.+...|...|++++|.+.+++..+... . ....++..+..+|...|++++|...+++..+ .. +..
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~---~~~ 260 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP---DLL 260 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG---GGH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC---hhH
Confidence 778899999999999999999998876321 1 1245778899999999999999999999887 33 233
Q ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCC---hhhHHHHHHHHhhcCCCCHHHH
Q 048394 390 FKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKD---VDGAEEFCKVLKSLNCLDFSAY 466 (485)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~ 466 (485)
..++..+...|.+.|++++|...+++..+.....+.+.....+..+...+...++ +.+|...+++. ...+.....+
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~ 339 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHH
Confidence 5677888899999999999999999999875332233334456666677778888 77777777662 2223456678
Q ss_pred HHHHHHHHHhCCCcchhc
Q 048394 467 SLLIKTYIAAGKLASDMR 484 (485)
Q Consensus 467 ~~l~~~~~~~g~~~~A~~ 484 (485)
..++..|...|++++|++
T Consensus 340 ~~la~~y~~~g~~~~A~~ 357 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAA 357 (378)
T ss_dssp HHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHH
Confidence 899999999999999974
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.52 E-value=1.5e-12 Score=106.96 Aligned_cols=166 Identities=14% Similarity=0.042 Sum_probs=84.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhc
Q 048394 287 YHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQK 366 (485)
Q Consensus 287 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 366 (485)
+..+...+...|++++|...++++....+.+...+..+...+...|++++|...++++.+..+. +...+..+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHh
Confidence 3344444444455555555554444444444444444555555555555555555554444322 344445555555555
Q ss_pred CcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChh
Q 048394 367 DMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVD 446 (485)
Q Consensus 367 ~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 446 (485)
|++++|...++++.+.. +.+...+..+...+...|++++|...++++... .+.+...+..+...+...|+++
T Consensus 90 ~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEAN---PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL-----RPNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp TCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHH
T ss_pred cCHHHHHHHHHHHHhcC---cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-----CccchHHHHHHHHHHHHcCCHH
Confidence 55555555555555442 233444455555555555555555555555554 2334455555555555555566
Q ss_pred hHHHHHHHHhhcCCC
Q 048394 447 GAEEFCKVLKSLNCL 461 (485)
Q Consensus 447 ~A~~~~~~~~~~~~~ 461 (485)
+|...++++.+..|.
T Consensus 162 ~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 162 EALPHFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCC
Confidence 665555555554443
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.50 E-value=5.4e-11 Score=109.76 Aligned_cols=295 Identities=13% Similarity=0.072 Sum_probs=203.0
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhhcc-cCCC-H----hHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC-CC----hhhHH
Q 048394 115 AVYLDLTAKTNGIAAAEKYFNGLSE-YAKN-R----YTYGALLNCYCKELMTERALALFEKMDELKFL-GN----TVAFN 183 (485)
Q Consensus 115 ~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~-~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~----~~~~~ 183 (485)
......+...|++++|...+++... .+++ . .+++.+...+...|++++|...+++....... ++ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3344566678999999999988766 2222 2 24666777888899999999999887653211 11 12356
Q ss_pred HHHHHHHhCCCcccHHHHHHHHHHc----CCC--c-cHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccC---CCCcHHHH
Q 048394 184 NLSTMYLRLGQPEKVRPLVNQMKQR----NIS--L-DNLTYIVWMQSYSHLNDIDGVERVFYEMCNECE---DKCRWTTY 253 (485)
Q Consensus 184 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~ 253 (485)
.+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++...... .+....++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 6777888999999999999998864 211 2 234566677888899999999999998776221 11134567
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhc-CC-CChHHHH-----HHHHHHHhcCChhhHHHHHHHhhhcCCCC----hhhHH
Q 048394 254 SNLASIYVKAELFEKAELALKKLEEM-KP-RDRKAYH-----FLISLYCNTSNLDAVNRVWGILKSTFPPT----NTSYL 322 (485)
Q Consensus 254 ~~l~~~~~~~~~~~~A~~~~~~~~~~-~~-~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~ 322 (485)
..+...+...|++++|...+++.... .. .....+. ..+..+...|++++|...+++.....+.+ ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 77888899999999999999988762 22 1212222 23344778999999999999887654432 22456
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHccCCCC-----HHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHH
Q 048394 323 VLLQALAKLNAIDILKQCFEEWESRCSSYD-----MRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFM 397 (485)
Q Consensus 323 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~ 397 (485)
.+...+...|++++|...++.......... ...+..+..++...|+.++|...+++...... + ...+
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~---~-----~g~~ 329 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN---R-----TGFI 329 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH---H-----HCCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc---c-----ccHH
Confidence 778888899999999999998876532211 12556677788889999999999998887632 1 1122
Q ss_pred HHHHhcccHHHHHHHHHHHHHH
Q 048394 398 IYYLRSRQLDLALNEMEAALSE 419 (485)
Q Consensus 398 ~~~~~~g~~~~A~~~~~~~~~~ 419 (485)
..+...| +....+++.+...
T Consensus 330 ~~~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 330 SHFVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp HHHHTTH--HHHHHHHHHHHHT
T ss_pred HHHHHcc--HHHHHHHHHHHhC
Confidence 3445555 5566677776665
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.50 E-value=4.8e-12 Score=103.89 Aligned_cols=161 Identities=17% Similarity=0.097 Sum_probs=73.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 048394 217 YIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCN 296 (485)
Q Consensus 217 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (485)
+..+...+...|++++|...++.+.+ ..+.+...+..++.++...|++++|...++++.+..|.+...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYD--ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCC--TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH--hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 33344444445555555555554443 2333444444444555555555555555555444444444444444444444
Q ss_pred cCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHH
Q 048394 297 TSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIF 376 (485)
Q Consensus 297 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 376 (485)
.|++++|...++++....+.+...+..+...+...|++++|.+.++++.+..+. +...+..+...+...|++++|...+
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHHHH
Confidence 444444444444444444334444444444444444444444444444433222 3334444444444444444444444
Q ss_pred HHHH
Q 048394 377 NNAK 380 (485)
Q Consensus 377 ~~~~ 380 (485)
+++.
T Consensus 168 ~~~~ 171 (186)
T 3as5_A 168 KKAN 171 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.49 E-value=1.6e-12 Score=128.59 Aligned_cols=170 Identities=15% Similarity=0.032 Sum_probs=122.3
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHH
Q 048394 246 DKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLL 325 (485)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 325 (485)
.|.+..+|+.+..+|.+.|++++|+..|++..+..|.+..+|..+..+|.+.|++++|+..|++..+..+.+..+|..+.
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34456677777777777777777777777777777777777777777777777777777777777777776777777777
Q ss_pred HHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhccc
Q 048394 326 QALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQ 405 (485)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 405 (485)
.++...|++++|++.|++..+..+. +...|+.+..+|...|++++|+..|++.++.. +-+...+..+...+...|+
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~---P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK---PDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHhhhhhHHHhccc
Confidence 7777777777777777777766544 56677777777777777777777777777653 3344566667777777777
Q ss_pred HHHHHHHHHHHHHH
Q 048394 406 LDLALNEMEAALSE 419 (485)
Q Consensus 406 ~~~A~~~~~~~~~~ 419 (485)
+++|.+.++++++.
T Consensus 161 ~~~A~~~~~kal~l 174 (723)
T 4gyw_A 161 WTDYDERMKKLVSI 174 (723)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777776665
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.49 E-value=1.8e-12 Score=128.28 Aligned_cols=167 Identities=9% Similarity=-0.045 Sum_probs=156.5
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 048394 213 DNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLIS 292 (485)
Q Consensus 213 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 292 (485)
+...++.+...|.+.|++++|++.|++..+ ..+.+..++..+..+|.+.|++++|+..|+++.+..|.+..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 467899999999999999999999999998 567788999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHH
Q 048394 293 LYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEA 372 (485)
Q Consensus 293 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 372 (485)
+|...|++++|.+.|++..+..+.+..++..+..++...|++++|++.|++..+..+. +...+..+..+|...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 9999999999999999999999889999999999999999999999999999998666 788899999999999999999
Q ss_pred HHHHHHHHhc
Q 048394 373 ALIFNNAKKR 382 (485)
Q Consensus 373 ~~~~~~~~~~ 382 (485)
.+.++++.+.
T Consensus 165 ~~~~~kal~l 174 (723)
T 4gyw_A 165 DERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.46 E-value=1.2e-11 Score=105.41 Aligned_cols=193 Identities=8% Similarity=-0.031 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHH
Q 048394 180 VAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASI 259 (485)
Q Consensus 180 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 259 (485)
..+......+...|++++|+..|++..+....++...+..+..++...|++++|++.++...+ ..+.+...+..+..+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHHH
Confidence 344444444444444444444444444432213344444444455555555555555555544 333344445555555
Q ss_pred HHhcccHHHHHHHHHHHHhcCCCCh-------HHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC--ChhhHHHHHHHHHh
Q 048394 260 YVKAELFEKAELALKKLEEMKPRDR-------KAYHFLISLYCNTSNLDAVNRVWGILKSTFPP--TNTSYLVLLQALAK 330 (485)
Q Consensus 260 ~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 330 (485)
|...|++++|...+++..+..|.+. ..|..+...+...|++++|...++++.+..+. +...+..+..++..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 5555555555555555555444444 33455555555555555555555555555544 44555555555443
Q ss_pred cCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 048394 331 LNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKR 382 (485)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 382 (485)
.| ..+++.+...+.. +...|.... ....+.+++|...|++..+.
T Consensus 166 ~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 166 NG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 32 2223333332211 222332222 12334566666666666655
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.44 E-value=1.9e-11 Score=106.64 Aligned_cols=214 Identities=11% Similarity=0.022 Sum_probs=132.9
Q ss_pred CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC---Chhh
Q 048394 247 KCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRD---RKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP---TNTS 320 (485)
Q Consensus 247 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~ 320 (485)
+.+...+..++..+.+.|++++|...|+++.+..|.+ ..++..+..+|...|++++|...|+++....|. ...+
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 3445555556666666666666666666666655544 556666666666666666666666666665543 2344
Q ss_pred HHHHHHHHHh--------cCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhH
Q 048394 321 YLVLLQALAK--------LNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKS 392 (485)
Q Consensus 321 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~ 392 (485)
+..+..++.. .|++++|...|+++.+..+. +......+ ..+..+...- ...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~--------------~~~~~~~~~~------~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDAT--------------QKIRELRAKL------ARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHH--------------HHHHHHHHHH------HHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHH--------------HHHHHHHHHH------HHH
Confidence 5555555555 56666666666666554332 11111111 1111111000 011
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhc----------CChhhHHHHHHHHhhcCCCC
Q 048394 393 RESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEE----------KDVDGAEEFCKVLKSLNCLD 462 (485)
Q Consensus 393 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~~~~ 462 (485)
+..+...|.+.|++++|+..|+++++..+. .......+..+..++... |++++|...++++.+..|.+
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPD--TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCC--CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 345677889999999999999999987410 111345677777788766 88999999999999999887
Q ss_pred H---HHHHHHHHHHHHhCCCcchh
Q 048394 463 F---SAYSLLIKTYIAAGKLASDM 483 (485)
Q Consensus 463 ~---~~~~~l~~~~~~~g~~~~A~ 483 (485)
+ .+...+..++.+.++++++.
T Consensus 229 ~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 229 PLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTCT
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4 56777788888877776654
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.44 E-value=1e-11 Score=110.22 Aligned_cols=187 Identities=10% Similarity=-0.004 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC------ChhhHHHHHHHHHhc-CChhHHHHHHHHHHHccCCC-C----
Q 048394 285 KAYHFLISLYCNTSNLDAVNRVWGILKSTFPP------TNTSYLVLLQALAKL-NAIDILKQCFEEWESRCSSY-D---- 352 (485)
Q Consensus 285 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~---- 352 (485)
.+|+.+..+|...|++++|...+++.....+. ...++..+...|... |++++|+..|++..+..... +
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 34455555555555555555555544432211 134566677777775 88888888888776543211 1
Q ss_pred HHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCch------hHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCC
Q 048394 353 MRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFF------KSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWR 426 (485)
Q Consensus 353 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 426 (485)
..++..+...+...|++++|...|++..+... .... ..|..+...+...|++++|...|++.+...+.....
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSM--GNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS--SCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh--cCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 34677788888889999999999988887642 2211 145666777888899999999998887643111000
Q ss_pred ccHHHHHHHHHHHh--hcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 048394 427 PMQVTVDTFFRFFE--EEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTY 473 (485)
Q Consensus 427 ~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 473 (485)
.....+..++.++. ..+++++|...|+++.+.+|.....+..+-..+
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 11123444555554 456688888888777777666655555554444
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.40 E-value=8e-12 Score=110.26 Aligned_cols=227 Identities=17% Similarity=0.110 Sum_probs=132.6
Q ss_pred HhCCCcccHHHHHHHHHHc-------CCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhc------cCCCCcHHHHHHH
Q 048394 190 LRLGQPEKVRPLVNQMKQR-------NISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNE------CEDKCRWTTYSNL 256 (485)
Q Consensus 190 ~~~g~~~~a~~~~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l 256 (485)
...|++++|+.+|++..+. ..+....++..+...|...|++++|...++++.+. ...+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666666666666542 11223455666677777777777777777776652 1123345566777
Q ss_pred HHHHHhcccHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhc--------CCCChhh
Q 048394 257 ASIYVKAELFEKAELALKKLEEM--------KPRDRKAYHFLISLYCNTSNLDAVNRVWGILKST--------FPPTNTS 320 (485)
Q Consensus 257 ~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~ 320 (485)
..+|...|++++|...++++... .|....++..+...|...|++++|...++++... .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 77777777777777777776663 2334566777777777777777777777776654 1114566
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcc-------CCCC-HHhHHHHHHHHHhcCc------HHHHHHHHHHHHhccccc
Q 048394 321 YLVLLQALAKLNAIDILKQCFEEWESRC-------SSYD-MRLADVIIRAYLQKDM------YEEAALIFNNAKKRANAS 386 (485)
Q Consensus 321 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~-~~~~~~l~~~~~~~~~------~~~A~~~~~~~~~~~~~~ 386 (485)
+..+...+...|++++|.+.++++.+.. ..+. ...+..+...+...+. +..+...++..... .
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-- 248 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-S-- 248 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-C--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-C--
Confidence 7777777777888888887777766531 1111 2233333333332222 22222222222111 1
Q ss_pred CCchhHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 048394 387 ARFFKSRESFMIYYLRSRQLDLALNEMEAALSE 419 (485)
Q Consensus 387 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 419 (485)
.....++..+...|...|++++|..++++.++.
T Consensus 249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 223456677778888888888888888887654
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.37 E-value=3.9e-10 Score=97.96 Aligned_cols=190 Identities=12% Similarity=0.032 Sum_probs=129.5
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048394 269 AELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFP--PTNTSYLVLLQALAKLNAIDILKQCFEEWES 346 (485)
Q Consensus 269 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 346 (485)
|...|++.....+++..++..+..++...|++++|++++.+....++ .+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 56666665554445566666777778888888888888887776665 3677777788888888888888888888876
Q ss_pred ccCCC-----CHHhHHHHHHH--HHh--cCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHH
Q 048394 347 RCSSY-----DMRLADVIIRA--YLQ--KDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAAL 417 (485)
Q Consensus 347 ~~~~~-----~~~~~~~l~~~--~~~--~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 417 (485)
. .| +..+...|..+ ... .+++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~----~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT----FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT----SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh----CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5 33 23444445544 222 33888889999888765 5553333444557888999999999988776
Q ss_pred HHhhhcC-----CCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHH
Q 048394 418 SEAKQFH-----WRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAY 466 (485)
Q Consensus 418 ~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 466 (485)
+.....+ .+.++.++..++......|+ +|.++++++.+..|.++.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 5421000 03466677667666666676 78899999999888877653
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.36 E-value=6.4e-12 Score=99.16 Aligned_cols=146 Identities=11% Similarity=0.016 Sum_probs=120.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhc
Q 048394 324 LLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRS 403 (485)
Q Consensus 324 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 403 (485)
|...+...|++++|++.++......+. +...+..+...|.+.|++++|...|++.++.+ +-+..+|..+...|.+.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ---ERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHc
Confidence 344556678889999988887665433 45566678999999999999999999999875 45677889999999999
Q ss_pred ccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHH-HHHHhhcCCCCHHHHHHHHHHHHHhCC
Q 048394 404 RQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEF-CKVLKSLNCLDFSAYSLLIKTYIAAGK 478 (485)
Q Consensus 404 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~ 478 (485)
|++++|+..|+++++. .+-+...+..+...+.+.|++++|.+. ++++.+..|.++.+|......+...|+
T Consensus 79 ~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 79 ENTDKAVECYRRSVEL-----NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999997 445678899999999999999876654 699999999999999999999988875
No 90
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.36 E-value=1.4e-11 Score=122.61 Aligned_cols=173 Identities=13% Similarity=-0.012 Sum_probs=89.0
Q ss_pred HhcCChhhHHHHHHHhh--------hcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhc
Q 048394 295 CNTSNLDAVNRVWGILK--------STFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQK 366 (485)
Q Consensus 295 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 366 (485)
...|++++|.+.+++.. +..+.+...+..+..++...|++++|.+.|+++.+..+. +...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHc
Confidence 44555555555555554 333334455555555555555555555555555554433 444555555555555
Q ss_pred CcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChh
Q 048394 367 DMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVD 446 (485)
Q Consensus 367 ~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 446 (485)
|++++|...|++..+.+ +.+...|..+...|.+.|++++ +..|+++++. .+.+...|..+..++.+.|+++
T Consensus 481 g~~~~A~~~~~~al~l~---P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~-----~P~~~~a~~~lg~~~~~~g~~~ 551 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF---PGELAPKLALAATAELAGNTDE-HKFYQTVWST-----NDGVISAAFGLARARSAEGDRV 551 (681)
T ss_dssp TCHHHHHHHHHHHHHHS---TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh-----CCchHHHHHHHHHHHHHcCCHH
Confidence 55555555555555442 2233444455555555555555 5555555554 2233445555555555555555
Q ss_pred hHHHHHHHHhhcCCCCHHHHHHHHHHHHHhC
Q 048394 447 GAEEFCKVLKSLNCLDFSAYSLLIKTYIAAG 477 (485)
Q Consensus 447 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 477 (485)
+|.+.|+++.+..|.+..+|..++.++...|
T Consensus 552 ~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 552 GAVRTLDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHHHHHHhhcccCcccHHHHHHHHHHHHccC
Confidence 5555555555555555555555555554433
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.35 E-value=1.9e-11 Score=107.80 Aligned_cols=229 Identities=10% Similarity=0.050 Sum_probs=162.3
Q ss_pred HhcCCHhHHHHHHHHHHhc------cCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCCChHHHHHH
Q 048394 225 SHLNDIDGVERVFYEMCNE------CEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEM--------KPRDRKAYHFL 290 (485)
Q Consensus 225 ~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l 290 (485)
...|++++|+..+++..+. ...+....++..+..+|...|++++|...++++... .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777766551 123446778889999999999999999999998873 23446788999
Q ss_pred HHHHHhcCChhhHHHHHHHhhhcC-----C--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHc------cCCC-CHHh
Q 048394 291 ISLYCNTSNLDAVNRVWGILKSTF-----P--P-TNTSYLVLLQALAKLNAIDILKQCFEEWESR------CSSY-DMRL 355 (485)
Q Consensus 291 ~~~~~~~~~~~~a~~~~~~~~~~~-----~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~ 355 (485)
...|...|++++|...++++.... + + ...++..+...+...|++++|...++++.+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999887652 1 2 6778899999999999999999999998765 1122 3567
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhccc-----ccCC-chhHHHHHHHHHHhc------ccHHHHHHHHHHHHHHhhhc
Q 048394 356 ADVIIRAYLQKDMYEEAALIFNNAKKRAN-----ASAR-FFKSRESFMIYYLRS------RQLDLALNEMEAALSEAKQF 423 (485)
Q Consensus 356 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~ 423 (485)
+..+...|...|++++|..+++++.+... ...+ ....|..+...+... ..+..+...++......
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 248 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS--- 248 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC---
Confidence 88899999999999999999999876410 0022 222333333333322 22344444444433222
Q ss_pred CCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 048394 424 HWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSL 458 (485)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 458 (485)
+....++..+...+...|++++|..+++++.+.
T Consensus 249 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 249 --PTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp --HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 034567888999999999999999999998875
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.34 E-value=1.6e-10 Score=100.77 Aligned_cols=189 Identities=12% Similarity=0.065 Sum_probs=142.3
Q ss_pred ccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCc---HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC---ChH
Q 048394 212 LDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCR---WTTYSNLASIYVKAELFEKAELALKKLEEMKPR---DRK 285 (485)
Q Consensus 212 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~ 285 (485)
.+...+..+...+.+.|++++|+..|+.+.+ ..+.+ ...+..++.+|.+.|++++|...|+++.+..|. ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFT--YGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGG--GCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3566677788889999999999999999998 34444 778888999999999999999999999996553 356
Q ss_pred HHHHHHHHHHh--------cCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHH
Q 048394 286 AYHFLISLYCN--------TSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLAD 357 (485)
Q Consensus 286 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 357 (485)
++..+..++.. .|++++|...|+++....|.+......+.... .+... ....+.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~--------------~~~~~----~~~~~~ 152 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIR--------------ELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHH--------------HHHHH----HHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHH--------------HHHHH----HHHHHH
Confidence 78888889988 99999999999999998887554443322111 11110 111245
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhc----------ccHHHHHHHHHHHHHHh
Q 048394 358 VIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRS----------RQLDLALNEMEAALSEA 420 (485)
Q Consensus 358 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 420 (485)
.+...|...|++++|...|+++++...........+..+..+|... |++++|...|+++++..
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 5778889999999999999998876320011234566777777765 88999999999999874
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.34 E-value=8.4e-11 Score=104.30 Aligned_cols=192 Identities=11% Similarity=0.006 Sum_probs=92.2
Q ss_pred HHhCCCcccHHHHHHHHHHc----CCCcc-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcc---CCCC-cHHHHHHHHHH
Q 048394 189 YLRLGQPEKVRPLVNQMKQR----NISLD-NLTYIVWMQSYSHLNDIDGVERVFYEMCNEC---EDKC-RWTTYSNLASI 259 (485)
Q Consensus 189 ~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~ 259 (485)
|...|++++|...|++..+. |-.++ ..+|+.+..+|...|++++|+..+++..+.. +... ...++..+..+
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44445555555555444331 11111 2344555555555555555555555544311 0000 12345555666
Q ss_pred HHhc-ccHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChh-------hHHHHH
Q 048394 260 YVKA-ELFEKAELALKKLEEMKPRD------RKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNT-------SYLVLL 325 (485)
Q Consensus 260 ~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~l~ 325 (485)
|... |++++|+..|++..+..|.+ ..++..+...+...|++++|...|++.....+.+.. .+..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 6664 66666666666655532211 234555666666666666666666666555444111 345555
Q ss_pred HHHHhcCChhHHHHHHHHHHHccCCC-C---HHhHHHHHHHHH--hcCcHHHHHHHHHHHH
Q 048394 326 QALAKLNAIDILKQCFEEWESRCSSY-D---MRLADVIIRAYL--QKDMYEEAALIFNNAK 380 (485)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~---~~~~~~l~~~~~--~~~~~~~A~~~~~~~~ 380 (485)
.++...|++++|...|++..+..+.. + ...+..++..+. ..+++++|...|+++.
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 55666666666666666554432110 0 112233344443 3345666666665543
No 94
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.34 E-value=2.4e-09 Score=94.08 Aligned_cols=235 Identities=7% Similarity=-0.038 Sum_probs=178.4
Q ss_pred HhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcc--cHHHHHHHHHHHHhcCCCChHHHHHHHHHH----Hhc---CCh
Q 048394 230 IDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAE--LFEKAELALKKLEEMKPRDRKAYHFLISLY----CNT---SNL 300 (485)
Q Consensus 230 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~ 300 (485)
.++|++.++.+.. -.|.+..+++.-..++...+ ++++++..++.+....|.+..+|+.-...+ ... +++
T Consensus 49 s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3577888877777 56666777777777777777 888888888888888887888887666555 444 678
Q ss_pred hhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChh--HHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCc------HHHH
Q 048394 301 DAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAID--ILKQCFEEWESRCSSYDMRLADVIIRAYLQKDM------YEEA 372 (485)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~A 372 (485)
++++.+++.+.+..+.+..+|+.-...+.+.|.++ ++++.++.+.+..+. |...|+.-...+...++ ++++
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHH
Confidence 88888888888888888888887777777788877 888888888887766 77777776666666666 8889
Q ss_pred HHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHH-HHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHH
Q 048394 373 ALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDL-ALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEF 451 (485)
Q Consensus 373 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 451 (485)
++.+++++..+ +-|...|+.+...+.+.|+... +..+..++.+.+. ..+.++..+..+...+.+.|+.++|.++
T Consensus 206 l~~~~~aI~~~---p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 206 LNYVKDKIVKC---PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEK--DQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGG--TEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhC---CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccC--CCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 99999888875 5567778777777777776444 5556666655420 0245777888888999999999999999
Q ss_pred HHHHhh-cCCCCHHHHHHHHHH
Q 048394 452 CKVLKS-LNCLDFSAYSLLIKT 472 (485)
Q Consensus 452 ~~~~~~-~~~~~~~~~~~l~~~ 472 (485)
++.+.+ .+|.....|...+..
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHhccChHHHHHHHHHHhh
Confidence 999986 688888888766543
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.32 E-value=6.3e-10 Score=96.67 Aligned_cols=242 Identities=12% Similarity=0.031 Sum_probs=150.7
Q ss_pred CCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHh
Q 048394 57 GGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNG 136 (485)
Q Consensus 57 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 136 (485)
.|....++++..+...........-..+++...|++... ..-.|....+..+... ...+ |...|++
T Consensus 26 ~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~----a~~~l~~ 91 (310)
T 3mv2_B 26 TGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK----NIEELEN 91 (310)
T ss_dssp TTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT----CCHHHHH
T ss_pred hhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc----HHHHHHH
Confidence 455666666543322222223333345667777776632 1112332233333222 2222 6677776
Q ss_pred hcc-cCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCc--
Q 048394 137 LSE-YAKNRYTYGALLNCYCKELMTERALALFEKMDELKF-LGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISL-- 212 (485)
Q Consensus 137 ~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-- 212 (485)
... ..++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.+. .|
T Consensus 92 l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~ 169 (310)
T 3mv2_B 92 LLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDT 169 (310)
T ss_dssp TTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHH
T ss_pred HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cccc
Confidence 665 345666666777888888888888888888766553 115566777778888888888888888888764 45
Q ss_pred ---cHHHHHHHHHH--HHhcC--CHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhc------
Q 048394 213 ---DNLTYIVWMQS--YSHLN--DIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEM------ 279 (485)
Q Consensus 213 ---~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------ 279 (485)
+..+...++.+ ....| ++.+|..+|+++.+ ..|++.+...+..++.+.|++++|...++.+.+.
T Consensus 170 ~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~---~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~ 246 (310)
T 3mv2_B 170 VSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ---TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQ 246 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTT
T ss_pred cccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccc
Confidence 34555556555 23334 78888888888766 3444333344555788888888888888876553
Q ss_pred ----CCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChh
Q 048394 280 ----KPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNT 319 (485)
Q Consensus 280 ----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 319 (485)
.|.++.+...+|......|+ +|.++++++.+..|.++.
T Consensus 247 k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 247 KENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp CHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred cccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 35677777666666666676 777888888877776543
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.32 E-value=9.7e-11 Score=98.14 Aligned_cols=33 Identities=12% Similarity=0.041 Sum_probs=17.4
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCCChHHHH
Q 048394 256 LASIYVKAELFEKAELALKKLEEMKPRDRKAYH 288 (485)
Q Consensus 256 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 288 (485)
.+..+...|++++|...|+++....|.+...|.
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 42 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYY 42 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 444455556666666666665555444444433
No 97
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.30 E-value=3.1e-09 Score=100.93 Aligned_cols=93 Identities=10% Similarity=0.087 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCC-HHHHHHHHHhhcc----cCCCHhHHHHHHH
Q 048394 78 MLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNG-IAAAEKYFNGLSE----YAKNRYTYGALLN 152 (485)
Q Consensus 78 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~----~~~~~~~~~~li~ 152 (485)
.|...+..+-. |+++.+..+|++.... .|+...|...+....+.++ .+....+|+.... ...+...|...+.
T Consensus 17 vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~ 93 (493)
T 2uy1_A 17 IMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE 93 (493)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 33334443332 8899999999988775 3788888888888777663 4556677777665 2346678887776
Q ss_pred HHH----hcCcHHHHHHHHHHHHhC
Q 048394 153 CYC----KELMTERALALFEKMDEL 173 (485)
Q Consensus 153 ~~~----~~~~~~~A~~~~~~m~~~ 173 (485)
.+. ..++++.+..+|++.+..
T Consensus 94 f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 94 EEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp HTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHhchhhhHHHHHHHHHHHHHHhC
Confidence 543 346788899999998873
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.30 E-value=5.9e-11 Score=118.03 Aligned_cols=173 Identities=6% Similarity=-0.103 Sum_probs=99.1
Q ss_pred HhcccHHHHHHHHHHHH--------hcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcC
Q 048394 261 VKAELFEKAELALKKLE--------EMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLN 332 (485)
Q Consensus 261 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 332 (485)
...|++++|++.++++. +..|.+...+..+..++...|++++|...++++.+..+.+...+..+..++...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 45566666666666665 4445555666666666666666666666666666665556666666666666666
Q ss_pred ChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHH
Q 048394 333 AIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNE 412 (485)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 412 (485)
++++|.+.|++..+..+. +...+..+..+|.+.|++++ ...|++..+.+ +.+...|..+...+.+.|++++|+..
T Consensus 482 ~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN---DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp CHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC---CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666655443 45555556666666666666 66666665553 23344555566666666666666666
Q ss_pred HHHHHHHhhhcCCCccHHHHHHHHHHHhhcC
Q 048394 413 MEAALSEAKQFHWRPMQVTVDTFFRFFEEEK 443 (485)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 443 (485)
|+++.+.. +.+...+..+..++...+
T Consensus 557 ~~~al~l~-----P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPTS-----RHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTTS-----TTHHHHHHHHHHHTC---
T ss_pred HHhhcccC-----cccHHHHHHHHHHHHccC
Confidence 66665542 222444555555554433
No 99
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.29 E-value=2.1e-09 Score=94.49 Aligned_cols=212 Identities=11% Similarity=-0.027 Sum_probs=181.2
Q ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC--ChhhHHHHHHHhhhcCCCChhhHHHHHHHH----Hhc---CCh
Q 048394 264 ELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTS--NLDAVNRVWGILKSTFPPTNTSYLVLLQAL----AKL---NAI 334 (485)
Q Consensus 264 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~ 334 (485)
...++|+..++.+....|.+..+|+.-..++...| ++++++..++.+....|.+..+|+.-...+ ... +++
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 34578999999999999999999999999999999 999999999999999999888887666655 555 789
Q ss_pred hHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHH--HHHHHHHHHHhcccccCCchhHHHHHHHHHHhccc------H
Q 048394 335 DILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYE--EAALIFNNAKKRANASARFFKSRESFMIYYLRSRQ------L 406 (485)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~ 406 (485)
++++++++.+.+..++ +..+|+.-.-++.+.|.++ +++..++++++.+ .-|...|+.-...+.+.|. +
T Consensus 127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d---~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD---LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhccccchhhhH
Confidence 9999999999998777 8889988877888888888 9999999999886 4566778776666667676 9
Q ss_pred HHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChh-hHHHHHHHHhhcC---CCCHHHHHHHHHHHHHhCCCcch
Q 048394 407 DLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVD-GAEEFCKVLKSLN---CLDFSAYSLLIKTYIAAGKLASD 482 (485)
Q Consensus 407 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A 482 (485)
+++++.+++++.. .+-|...|+.+...+.+.|+.. .+..+++++.+.+ +.++.++..++.+|.+.|+.++|
T Consensus 203 ~eEl~~~~~aI~~-----~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 203 DEELNYVKDKIVK-----CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHH-----CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHh-----CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 9999999999998 5678889998888888888744 4667888887766 77999999999999999999998
Q ss_pred hc
Q 048394 483 MR 484 (485)
Q Consensus 483 ~~ 484 (485)
++
T Consensus 278 ~~ 279 (306)
T 3dra_A 278 RT 279 (306)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.29 E-value=1.6e-10 Score=96.75 Aligned_cols=131 Identities=15% Similarity=0.039 Sum_probs=88.7
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCC--
Q 048394 256 LASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNA-- 333 (485)
Q Consensus 256 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 333 (485)
+..+|.+.|++++|...|++..+..|.+...+..+..++...|++++|...|+++.+..|.+..++..+...+...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE 139 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH
Confidence 777788888888888888888887777888888888888888888888888888888777777777777777765543
Q ss_pred hhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhH
Q 048394 334 IDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKS 392 (485)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~ 392 (485)
.+.+...+..... +.|....+.....++...|++++|...|++.++. .|+...
T Consensus 140 ~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l----~P~~~~ 192 (208)
T 3urz_A 140 KKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR----FPSTEA 192 (208)
T ss_dssp HHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT----SCCHHH
T ss_pred HHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCHHH
Confidence 3334444444432 2222223333455556667778888888877765 565443
No 101
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.28 E-value=4.3e-10 Score=86.62 Aligned_cols=131 Identities=16% Similarity=0.077 Sum_probs=79.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHH
Q 048394 321 YLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYY 400 (485)
Q Consensus 321 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 400 (485)
+..++..+...|++++|..+++++.+..+. +...+..+...+...|++++|..+++++...+ +.+...+..+...+
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC---CCchHHHHHHHHHH
Confidence 445555566666666666666666554433 45555556666666666666666666666543 33344555566666
Q ss_pred HhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCC
Q 048394 401 LRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNC 460 (485)
Q Consensus 401 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 460 (485)
...|++++|..+++++... .+.+...+..+...+...|++++|...++++.+..|
T Consensus 80 ~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALEL-----DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHhcCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 6666666666666666665 333455666666666666666666666666666554
No 102
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.27 E-value=4.9e-10 Score=86.31 Aligned_cols=124 Identities=19% Similarity=0.179 Sum_probs=53.0
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChh
Q 048394 256 LASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAID 335 (485)
Q Consensus 256 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 335 (485)
++..+...|++++|...++++.+..|.+...+..+...+...|++++|...++++....+.+...+..+...+...|+++
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 86 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 86 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHH
Confidence 44444444444444444444444333344444444444444444444444444444433333333444444444444444
Q ss_pred HHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 048394 336 ILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAK 380 (485)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 380 (485)
+|.+.++.+.+..+. +...+..+...+...|++++|...++++.
T Consensus 87 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 87 EAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 444444444333221 23333334444444444444444444443
No 103
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.27 E-value=4.6e-11 Score=94.21 Aligned_cols=142 Identities=15% Similarity=0.070 Sum_probs=82.1
Q ss_pred HHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhh
Q 048394 223 SYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDA 302 (485)
Q Consensus 223 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 302 (485)
.+...|++++|+..++.... ..+.+...+..+..+|.+.|++++|...|+++.+..|.+..+|..+..+|...|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHH
Confidence 34455566666666665554 2333334444566666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHH-HHHHHHccCCCCHHhHHHHHHHHHhcC
Q 048394 303 VNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQC-FEEWESRCSSYDMRLADVIIRAYLQKD 367 (485)
Q Consensus 303 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 367 (485)
|...|++..+..|.+..++..+...+.+.|+.++|.+. +++..+..+. ++.+|......+...|
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 66666666666666666666666666666666554443 3555555443 4555555444444444
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.23 E-value=5.1e-10 Score=98.85 Aligned_cols=157 Identities=6% Similarity=-0.057 Sum_probs=85.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHH
Q 048394 317 TNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESF 396 (485)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l 396 (485)
+...+..+...+...|++++|...|+++.+..+. +...+..+...+...|++++|...++++... .|+.......
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~----~p~~~~~~~~ 190 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ----DQDTRYQGLV 190 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG----GCSHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh----hcchHHHHHH
Confidence 4444455555555556666666666655555443 4455555556666666666666666555444 3332222111
Q ss_pred -HHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCC--HHHHHHHHHHH
Q 048394 397 -MIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLD--FSAYSLLIKTY 473 (485)
Q Consensus 397 -~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~ 473 (485)
...+...++.++|+..+++.+.. .+.+...+..+...+...|++++|...++++++..|.+ ..++..++.+|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~-----~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAE-----NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhc-----CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 11234455555566666666555 33445555556666666666666666666666665554 55666666666
Q ss_pred HHhCCCcchh
Q 048394 474 IAAGKLASDM 483 (485)
Q Consensus 474 ~~~g~~~~A~ 483 (485)
...|+.++|+
T Consensus 266 ~~~g~~~~a~ 275 (287)
T 3qou_A 266 AALGTGDALA 275 (287)
T ss_dssp HHHCTTCHHH
T ss_pred HHcCCCCcHH
Confidence 6666665554
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.22 E-value=2.1e-09 Score=91.16 Aligned_cols=189 Identities=12% Similarity=0.039 Sum_probs=128.2
Q ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChh---hHH
Q 048394 249 RWTTYSNLASIYVKAELFEKAELALKKLEEMKPRD---RKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNT---SYL 322 (485)
Q Consensus 249 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 322 (485)
+...+..++..+.+.|++++|...|+++.+..|.+ ...+..+..+|.+.|++++|...|+++.+..|.+.. ++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34556667788889999999999999998865544 357888889999999999999999999888877433 455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchh-HH--------
Q 048394 323 VLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFK-SR-------- 393 (485)
Q Consensus 323 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~-~~-------- 393 (485)
.+..++...+.. .+ ..|..+...+...|++++|...|+++++. .|+.. .+
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~P~~~~a~~a~~~l~~ 141 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG----YPNSQYTTDATKRLVF 141 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT----CTTCTTHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHH----CcCChhHHHHHHHHHH
Confidence 555555543210 00 01112223334455666666666666654 22221 11
Q ss_pred ---------HHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCcc---HHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCC
Q 048394 394 ---------ESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPM---QVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCL 461 (485)
Q Consensus 394 ---------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 461 (485)
..+...|.+.|++++|+..|+++++.. +.+ ...+..+..++.+.|++++|.+.++.+....|.
T Consensus 142 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 142 LKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 244566788999999999999999873 222 256788889999999999999999999888776
Q ss_pred CH
Q 048394 462 DF 463 (485)
Q Consensus 462 ~~ 463 (485)
+.
T Consensus 217 ~~ 218 (225)
T 2yhc_A 217 TL 218 (225)
T ss_dssp CC
T ss_pred ch
Confidence 53
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.22 E-value=9.1e-10 Score=97.24 Aligned_cols=170 Identities=14% Similarity=-0.013 Sum_probs=118.3
Q ss_pred CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHH
Q 048394 247 KCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQ 326 (485)
Q Consensus 247 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 326 (485)
+.+...+..+...+...|++++|...|+++....|.+...+..+...+...|++++|...++++....+...........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 44555666677777777888888888888777777777778888888888888888888887776666543333333444
Q ss_pred HHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccH
Q 048394 327 ALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQL 406 (485)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 406 (485)
.+...++.+.|.+.+++..+..+. +...+..+...+...|++++|...|.++.+.... ..+...+..+...|...|+.
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~-~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLT-AADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-GGGGHHHHHHHHHHHHHCTT
T ss_pred HHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc-cccchHHHHHHHHHHHcCCC
Confidence 455667777777777777776554 6667777777777788888888888777776310 11245667777777777777
Q ss_pred HHHHHHHHHHHH
Q 048394 407 DLALNEMEAALS 418 (485)
Q Consensus 407 ~~A~~~~~~~~~ 418 (485)
++|...|++.+.
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 777777776654
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.21 E-value=3.7e-10 Score=110.33 Aligned_cols=154 Identities=14% Similarity=0.029 Sum_probs=115.1
Q ss_pred cccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 048394 263 AELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFE 342 (485)
Q Consensus 263 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 342 (485)
.|++++|...++++.+..|.+...+..+...+...|++++|...+++..+..+.+...+..+..++...|++++|.+.++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47888899999988888888888899999999999999999999999988888788888889999999999999999999
Q ss_pred HHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhc---ccHHHHHHHHHHHHHH
Q 048394 343 EWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRS---RQLDLALNEMEAALSE 419 (485)
Q Consensus 343 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 419 (485)
+..+..+. +...+..+..+|...|++++|...|++..+.. +.+...+..+...+... |+.++|.+.+++.++.
T Consensus 82 ~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 82 QASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL---PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 88887654 67788888888999999999999999888774 34556777888888888 8999999999998887
Q ss_pred h
Q 048394 420 A 420 (485)
Q Consensus 420 ~ 420 (485)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 108
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.21 E-value=1.3e-07 Score=89.91 Aligned_cols=369 Identities=11% Similarity=0.021 Sum_probs=203.6
Q ss_pred CchhHHHHHHhhcCCCCcHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhC-CC-CCChhhHHHH
Q 048394 42 NEDKLYKRLSALGATGGSVTGALNAYIME-GKTVRKDMLEYCVRSLRKFGR-YRHALEVIEWMESR-KM-HFSYTDFAVY 117 (485)
Q Consensus 42 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~-~~-~~~~~~~~~l 117 (485)
....+|.+....-+. +....+-..+.+. ...|+...+...+....+.+. .+....+|+..... |. ..+...|...
T Consensus 13 ~aR~vyer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 13 SPSAIMEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp CHHHHHHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 445566666554431 3444444444332 234788888888877777663 35567788876553 42 2356677777
Q ss_pred HHHHH----hhCCHHHHHHHHHhhcccCCC--HhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 048394 118 LDLTA----KTNGIAAAEKYFNGLSEYAKN--RYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLR 191 (485)
Q Consensus 118 ~~~~~----~~g~~~~a~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 191 (485)
+..+. ..|+++.+.++|++....++. ...|...... .+......+.+++.+..
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~-------------------- 150 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDTL-------------------- 150 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH--------------------
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHHh--------------------
Confidence 76654 356788899999998873222 1223322221 11122222333222211
Q ss_pred CCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-------CHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcc
Q 048394 192 LGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLN-------DIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAE 264 (485)
Q Consensus 192 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 264 (485)
+.+..|..+++.+...--..+...|...+..-...+ ..+.+..+|+++.. ..+.+...|...+..+.+.|
T Consensus 151 -~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~--~~p~~~~lW~~ya~~~~~~~ 227 (493)
T 2uy1_A 151 -PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILD--SFYYAEEVYFFYSEYLIGIG 227 (493)
T ss_dssp -HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH--HTTTCHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHcC
Confidence 112223333333222100012223433333322110 02345667777776 45566777777777777788
Q ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcC-----------CC--ChhhHHHHHHHHHhc
Q 048394 265 LFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTF-----------PP--TNTSYLVLLQALAKL 331 (485)
Q Consensus 265 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~--~~~~~~~l~~~~~~~ 331 (485)
+.+.|..++++.... |.+...|... ....+.++. ++.+.... .. ....|...+....+.
T Consensus 228 ~~~~ar~i~erAi~~-P~~~~l~~~y----~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~ 299 (493)
T 2uy1_A 228 QKEKAKKVVERGIEM-SDGMFLSLYY----GLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKK 299 (493)
T ss_dssp CHHHHHHHHHHHHHH-CCSSHHHHHH----HHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhC-CCcHHHHHHH----HhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHc
Confidence 888888888888877 6554444322 221112221 22222110 11 235566677777777
Q ss_pred CChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHh-cCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHH
Q 048394 332 NAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQ-KDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLAL 410 (485)
Q Consensus 332 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 410 (485)
++.+.|..+|+.. +. ...+..+|...+..-.. .++.+.|..+|+...+.. .-+...+...++...+.|+.+.|.
T Consensus 300 ~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~---~~~~~~~~~yid~e~~~~~~~~aR 374 (493)
T 2uy1_A 300 RGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH---PDSTLLKEEFFLFLLRIGDEENAR 374 (493)
T ss_dssp HCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 8888999999888 32 22344444432222222 236888999998887752 112334555666667788888888
Q ss_pred HHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 048394 411 NEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKS 457 (485)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 457 (485)
.+|+++. .....|...+..-...|+.+.+.+++++..+
T Consensus 375 ~l~er~~---------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 375 ALFKRLE---------KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHSC---------CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHH---------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888861 3567788888777778888888888887764
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.21 E-value=2.6e-10 Score=92.72 Aligned_cols=161 Identities=13% Similarity=0.025 Sum_probs=97.9
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHH-HHhcC
Q 048394 254 SNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQA-LAKLN 332 (485)
Q Consensus 254 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 332 (485)
..+...+...|++++|...|+++.+..|.+...+..+..++...|++++|...++++....+ +...+..+... +...+
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhc
Confidence 34556666677777777777776666666677777777777777777777777776665555 43332222111 11222
Q ss_pred ChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCC-chhHHHHHHHHHHhcccHHHHHH
Q 048394 333 AIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASAR-FFKSRESFMIYYLRSRQLDLALN 411 (485)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 411 (485)
....|...+++..+..+. +...+..+...+...|++++|...|+++.+... .+ +...+..+...+...|+.++|..
T Consensus 89 ~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 89 AESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNL--GAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp TSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT--TTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred ccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc--ccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 233456666666665444 566666677777777777777777777666532 21 23456666666777777777777
Q ss_pred HHHHHHH
Q 048394 412 EMEAALS 418 (485)
Q Consensus 412 ~~~~~~~ 418 (485)
.|++.+.
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.20 E-value=3.9e-09 Score=89.51 Aligned_cols=103 Identities=6% Similarity=-0.026 Sum_probs=62.8
Q ss_pred hcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHH
Q 048394 296 NTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALI 375 (485)
Q Consensus 296 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 375 (485)
..|++++|...|+++.+..|.+........... .+...+. .....+...|.+.|++++|...
T Consensus 108 ~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~----------~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~ 169 (225)
T 2yhc_A 108 DPQQARAAFSDFSKLVRGYPNSQYTTDATKRLV----------FLKDRLA--------KYEYSVAEYYTERGAWVAVVNR 169 (225)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHH----------HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHH----------HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHH
Confidence 356777777777777777666444332221110 0000000 0112356667778888888888
Q ss_pred HHHHHhcccccCCc----hhHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Q 048394 376 FNNAKKRANASARF----FKSRESFMIYYLRSRQLDLALNEMEAALSEA 420 (485)
Q Consensus 376 ~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 420 (485)
|+++++. .|+ ...+..+..+|.+.|++++|.+.++.+...+
T Consensus 170 ~~~~l~~----~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 170 VEGMLRD----YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHH----STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHH----CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 8888776 333 2456777778888888888888888777764
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.17 E-value=5e-10 Score=91.03 Aligned_cols=158 Identities=9% Similarity=-0.038 Sum_probs=76.9
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHH-HHhcC
Q 048394 220 WMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISL-YCNTS 298 (485)
Q Consensus 220 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 298 (485)
+...+...|++++|...|++..+ ..|.+...+..+..++...|++++|...++++....| ++..+..+... +...+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhc
Confidence 33444455555555555555444 3334444455555555555555555555555444333 33322222111 11112
Q ss_pred ChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCC-CHHhHHHHHHHHHhcCcHHHHHHHHH
Q 048394 299 NLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSY-DMRLADVIIRAYLQKDMYEEAALIFN 377 (485)
Q Consensus 299 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 377 (485)
....|...+++.....|.+...+..+..++...|++++|...|+++.+..+.+ +...+..+...+...|+.++|...|+
T Consensus 89 ~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 89 AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 22334555555555555555555555555555555555555555555544332 23445555555555555555555555
Q ss_pred HHH
Q 048394 378 NAK 380 (485)
Q Consensus 378 ~~~ 380 (485)
+..
T Consensus 169 ~al 171 (176)
T 2r5s_A 169 RQL 171 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.16 E-value=1.3e-09 Score=106.59 Aligned_cols=156 Identities=10% Similarity=0.068 Sum_probs=102.1
Q ss_pred CCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHH
Q 048394 192 LGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAEL 271 (485)
Q Consensus 192 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 271 (485)
.|++++|++.|++..+.. +.+...+..+...+...|++++|.+.+++..+ ..+.+...+..+..+|...|++++|..
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 366777777777776642 23456677777777777778888777777776 455567777777777777777777777
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhc---CChhHHHHHHHHHHHcc
Q 048394 272 ALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKL---NAIDILKQCFEEWESRC 348 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 348 (485)
.+++..+..|.+...+..+..+|...|++++|...+++..+..+.+...+..+...+... |+.++|.+.+++..+.+
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 777777777777777777777777777777777777777777766777777777777777 77777777777777765
Q ss_pred CC
Q 048394 349 SS 350 (485)
Q Consensus 349 ~~ 350 (485)
+.
T Consensus 159 p~ 160 (568)
T 2vsy_A 159 VG 160 (568)
T ss_dssp CC
T ss_pred Cc
Confidence 44
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.15 E-value=2.3e-09 Score=95.74 Aligned_cols=208 Identities=10% Similarity=-0.032 Sum_probs=93.6
Q ss_pred hcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHH
Q 048394 226 HLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNR 305 (485)
Q Consensus 226 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 305 (485)
..|++++|.+++++..+... ... +...++++.|...|.++ ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~--~~~---------~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK--TSF---------MKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC--CCS---------SSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc--ccc---------cCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHH
Confidence 35778889999988776211 110 00023444444444332 233444455555555
Q ss_pred HHHHhhhcCCC------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCC---C--CHHhHHHHHHHHHhcCcHHHHHH
Q 048394 306 VWGILKSTFPP------TNTSYLVLLQALAKLNAIDILKQCFEEWESRCSS---Y--DMRLADVIIRAYLQKDMYEEAAL 374 (485)
Q Consensus 306 ~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~A~~ 374 (485)
.+.+....... ...+|..+...|...|++++|...|++..+.... + ...++..+..+|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 54444332111 1234444555555555555555555544332110 0 12344445555555 55555555
Q ss_pred HHHHHHhccccc-CC--chhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhhcCChhhHHH
Q 048394 375 IFNNAKKRANAS-AR--FFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPM-QVTVDTFFRFFEEEKDVDGAEE 450 (485)
Q Consensus 375 ~~~~~~~~~~~~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~ 450 (485)
.|++..+..... .+ ...++..+...|.+.|++++|+..|++.+......+..+. ...+..+..++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 555554331100 00 0233444555555555555555555555544211111111 1133444444455555555555
Q ss_pred HHHHHhhcCC
Q 048394 451 FCKVLKSLNC 460 (485)
Q Consensus 451 ~~~~~~~~~~ 460 (485)
.|++.. ..|
T Consensus 217 ~~~~al-~~p 225 (307)
T 2ifu_A 217 CVRESY-SIP 225 (307)
T ss_dssp HHHHHT-TST
T ss_pred HHHHHh-CCC
Confidence 555555 444
No 114
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.15 E-value=2e-09 Score=81.82 Aligned_cols=113 Identities=11% Similarity=-0.019 Sum_probs=99.2
Q ss_pred HHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHH
Q 048394 353 MRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTV 432 (485)
Q Consensus 353 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 432 (485)
...+......|.+.|++++|...|++.++.+ +.+...|..+..+|.+.|++++|+..+++.++. .+.+...|
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~a~ 84 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD---PENAILYSNRAACLTKLMEFQRALDDCDTCIRL-----DSKFIKGY 84 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh-----hhhhhHHH
Confidence 4566778888999999999999999998875 456778888999999999999999999999987 45667889
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 048394 433 DTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTY 473 (485)
Q Consensus 433 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 473 (485)
..+..++...|++++|.+.|+++++..|.+..++..|..++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999998887653
No 115
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.12 E-value=2.4e-07 Score=81.89 Aligned_cols=198 Identities=9% Similarity=-0.063 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC--hhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCC-hhHHHHHHH
Q 048394 266 FEKAELALKKLEEMKPRDRKAYHFLISLYCNTSN--LDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNA-IDILKQCFE 342 (485)
Q Consensus 266 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~ 342 (485)
+++++.+++.+....|.+..+|+.-...+...++ +++++.+++++.+..+.+..+|+.-...+...|. .+++++.+.
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 4666666766666666677777666666666663 5677777777777766666666666666666666 467777777
Q ss_pred HHHHccCCCCHHhHHHHHHHHHhc--------------CcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhc-----
Q 048394 343 EWESRCSSYDMRLADVIIRAYLQK--------------DMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRS----- 403 (485)
Q Consensus 343 ~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----- 403 (485)
.+.+..+. |...|+.....+... +.++++++.+.+..... +-|...|+-+-..+.+.
T Consensus 170 ~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~---P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 170 SLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD---PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhccCccc
Confidence 77766555 666665554444433 45778888888887764 44556665444444433
Q ss_pred ------ccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH-----HHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHH
Q 048394 404 ------RQLDLALNEMEAALSEAKQFHWRPMQVTVDTFF-----RFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKT 472 (485)
Q Consensus 404 ------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 472 (485)
+.++++++.++++.+.. ||. .|+.+. ......|..+++..++.++.+.+|....-|..+...
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~------pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELE------PEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHC------TTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhC------ccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 56889999999999874 554 343222 222346778889999999999999988888887665
Q ss_pred HH
Q 048394 473 YI 474 (485)
Q Consensus 473 ~~ 474 (485)
+.
T Consensus 319 ~~ 320 (331)
T 3dss_A 319 FL 320 (331)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.10 E-value=2.7e-09 Score=95.32 Aligned_cols=228 Identities=10% Similarity=0.083 Sum_probs=158.9
Q ss_pred hCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHh-cCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHH
Q 048394 191 RLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSH-LNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKA 269 (485)
Q Consensus 191 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 269 (485)
..|++++|.+++++..+.. +.. +.. .++++.|...|..+ +..|...|++++|
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQA 55 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHH
Confidence 3577889999999887641 111 112 47788888887764 4467778999999
Q ss_pred HHHHHHHHhcCC--C----ChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC------ChhhHHHHHHHHHhcCChhHH
Q 048394 270 ELALKKLEEMKP--R----DRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP------TNTSYLVLLQALAKLNAIDIL 337 (485)
Q Consensus 270 ~~~~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a 337 (485)
...|.+.....+ . -..+|+.+...|...|++++|...+++....... ...++..+...|.. |++++|
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 988888777221 1 1457888888999999999999999887654221 24567788888888 999999
Q ss_pred HHHHHHHHHccCCC-----CHHhHHHHHHHHHhcCcHHHHHHHHHHHHhccccc--CCc-hhHHHHHHHHHHhcccHHHH
Q 048394 338 KQCFEEWESRCSSY-----DMRLADVIIRAYLQKDMYEEAALIFNNAKKRANAS--ARF-FKSRESFMIYYLRSRQLDLA 409 (485)
Q Consensus 338 ~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~p~-~~~~~~l~~~~~~~g~~~~A 409 (485)
+..|++..+..... ...+++.+...|...|++++|...|++..+..... .+. ...+..+...+...|++++|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999887643221 14678889999999999999999999988652100 111 12455666677788999999
Q ss_pred HHHHHHHHHHhhhcCCCcc--HHHHHHHHHHHhhcCChhhHHH
Q 048394 410 LNEMEAALSEAKQFHWRPM--QVTVDTFFRFFEEEKDVDGAEE 450 (485)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~ 450 (485)
...|++.+ ..+. +... ......++.++ ..|+.+.+..
T Consensus 215 ~~~~~~al-~~p~--~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 215 QKCVRESY-SIPG--FSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHT-TSTT--STTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHh-CCCC--CCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999998 5421 2222 23445555555 5677766655
No 117
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.08 E-value=1.2e-07 Score=84.24 Aligned_cols=238 Identities=7% Similarity=-0.019 Sum_probs=152.3
Q ss_pred CHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc-C-ChhhHHH
Q 048394 229 DIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAE-LFEKAELALKKLEEMKPRDRKAYHFLISLYCNT-S-NLDAVNR 305 (485)
Q Consensus 229 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~ 305 (485)
..++|+++++.+.. ..+.+..+++.-..++...| ++++++..++.+....|.+..+|+.-...+... + ++++++.
T Consensus 69 ~se~AL~lt~~~L~--~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 69 KSERALELTEIIVR--MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 34566777777666 45556666666666666666 477777777777777777777777666666665 5 6677777
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHhcCChh--------HHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCc-------HH
Q 048394 306 VWGILKSTFPPTNTSYLVLLQALAKLNAID--------ILKQCFEEWESRCSSYDMRLADVIIRAYLQKDM-------YE 370 (485)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~ 370 (485)
+++++.+..+.+..+|+.-...+.+.|.++ ++++.++++.+..+. |...|+.....+.+.++ ++
T Consensus 147 ~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 147 YIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHH
Confidence 777777777666666666555555555555 777777777777665 67777766666666664 67
Q ss_pred HHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccH--------------------HHHHHHHHHHHHHhh-hcCCCccH
Q 048394 371 EAALIFNNAKKRANASARFFKSRESFMIYYLRSRQL--------------------DLALNEMEAALSEAK-QFHWRPMQ 429 (485)
Q Consensus 371 ~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~~-~~~~~~~~ 429 (485)
++++.+++++... +-|...|+-+-..+.+.|.. ....++..++..... .....+++
T Consensus 226 eELe~~~~aI~~~---P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 226 DELIYILKSIHLI---PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHhC---CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 7778887777764 44555665555545544432 233333333332210 00124677
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHh-hcCCCCHHHHHHHHHH
Q 048394 430 VTVDTFFRFFEEEKDVDGAEEFCKVLK-SLNCLDFSAYSLLIKT 472 (485)
Q Consensus 430 ~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~ 472 (485)
..+..++..|...|+.++|.++++.+. +.+|.....|...+..
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 888888899999999999999999987 5567777777666544
No 118
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.07 E-value=9e-09 Score=78.57 Aligned_cols=121 Identities=10% Similarity=-0.063 Sum_probs=105.7
Q ss_pred CHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHH
Q 048394 352 DMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVT 431 (485)
Q Consensus 352 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 431 (485)
+...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++.... .+.+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~ 82 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN---PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI-----DPAYSKA 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-----CccCHHH
Confidence 45667778888999999999999999988764 446677888888999999999999999999987 4456788
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCc
Q 048394 432 VDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLA 480 (485)
Q Consensus 432 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 480 (485)
+..+...+...|++++|...++++.+..|.+...+..++.++.+.|+++
T Consensus 83 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 83 YGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 8888999999999999999999999999999999999999999998864
No 119
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.07 E-value=8.9e-09 Score=77.84 Aligned_cols=117 Identities=16% Similarity=0.062 Sum_probs=101.5
Q ss_pred HHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHH
Q 048394 353 MRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTV 432 (485)
Q Consensus 353 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 432 (485)
...+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++... .+.+..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~ 80 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNAEAW 80 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCccHHHH
Confidence 5677788888999999999999999988764 445677888888999999999999999999887 45567888
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhC
Q 048394 433 DTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAG 477 (485)
Q Consensus 433 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 477 (485)
..+...+...|++++|...++++.+..|.++..+..++.++.+.|
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 889999999999999999999999999999999999998887765
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.04 E-value=3.8e-09 Score=92.90 Aligned_cols=195 Identities=8% Similarity=-0.066 Sum_probs=119.6
Q ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHH
Q 048394 249 RWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQAL 328 (485)
Q Consensus 249 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 328 (485)
+...+..++..+...|++++|...|+++....|.+...|..+..+|...|++++|...+++..+..+.+...+..+..++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45566667777778888888888888877777777778888888888888888888888888777777777777888888
Q ss_pred HhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHH
Q 048394 329 AKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDL 408 (485)
Q Consensus 329 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 408 (485)
...|++++|...|+...+..+. +...+...+....+ ..++... ........ .++......+ ..+ ..|+.++
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~--~~~~~i~~~l-~~l-~~~~~~~ 153 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKRW-NSIEERRI--HQESELHSYL-TRL-IAAERER 153 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHHH-HHHHHTCC--CCCCHHHHHH-HHH-HHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHHH-HHHHHHHH--hhhHHHHHHH-HHH-HHHHHHH
Confidence 8888888888888877665332 11111111111111 1111111 11222222 3333333333 222 3688888
Q ss_pred HHHHHHHHHHHhhhcCCCccHH-HHHHHHHHHhhc-CChhhHHHHHHHHhhc
Q 048394 409 ALNEMEAALSEAKQFHWRPMQV-TVDTFFRFFEEE-KDVDGAEEFCKVLKSL 458 (485)
Q Consensus 409 A~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~-~~~~~A~~~~~~~~~~ 458 (485)
|++.+++..+.. |+.. ....+...+.+. +.+++|.++|.++.+.
T Consensus 154 A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGH------EDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTT------SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccc------cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 888888777652 4433 333333334443 5677888888877653
No 121
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.03 E-value=8.4e-09 Score=79.08 Aligned_cols=119 Identities=17% Similarity=0.054 Sum_probs=100.1
Q ss_pred CHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHH
Q 048394 352 DMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVT 431 (485)
Q Consensus 352 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 431 (485)
+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|+..++++.+. .+.+...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~ 86 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN---PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL-----EPTFIKG 86 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC---TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCchHH
Confidence 46677778888888999999999999888764 345677788888888899999999999999887 4456778
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCC
Q 048394 432 VDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGK 478 (485)
Q Consensus 432 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 478 (485)
+..+..++...|++++|.+.++++.+..|.+...+..++.++.+.|+
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888899999999999999999999988888999999999888764
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.03 E-value=7.4e-08 Score=85.31 Aligned_cols=168 Identities=8% Similarity=-0.002 Sum_probs=118.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhhcCCCChh------hHHHHHHHHHhcCChhHHHHHHHHHHHccCC-CC----HHhHH
Q 048394 289 FLISLYCNTSNLDAVNRVWGILKSTFPPTNT------SYLVLLQALAKLNAIDILKQCFEEWESRCSS-YD----MRLAD 357 (485)
Q Consensus 289 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~ 357 (485)
..+..+...|++++|..++++.....+.+.. .+..+...+...+++++|...++++.+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3456677788888888888877765444221 2334666666777888888888888774322 22 33678
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhc-----ccccCC-chhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCcc-HH
Q 048394 358 VIIRAYLQKDMYEEAALIFNNAKKR-----ANASAR-FFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPM-QV 430 (485)
Q Consensus 358 ~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~ 430 (485)
.+..+|...|++++|...|+++.+. +. .+ ...++..+...|.+.|++++|+..+++.++.....+..+. ..
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDN--EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 8888899999999999999888742 11 12 2236778888899999999999999998876533322232 56
Q ss_pred HHHHHHHHHhhcCC-hhhHHHHHHHHhhc
Q 048394 431 TVDTFFRFFEEEKD-VDGAEEFCKVLKSL 458 (485)
Q Consensus 431 ~~~~l~~~~~~~~~-~~~A~~~~~~~~~~ 458 (485)
+|..+..++.+.|+ +++|.+.++++.+.
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 78888888999994 59999999888764
No 123
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.01 E-value=2.5e-08 Score=83.56 Aligned_cols=15 Identities=13% Similarity=-0.079 Sum_probs=6.2
Q ss_pred cHHHHHHHHHHHHhc
Q 048394 368 MYEEAALIFNNAKKR 382 (485)
Q Consensus 368 ~~~~A~~~~~~~~~~ 382 (485)
++++|...|++..+.
T Consensus 183 d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 183 NKQKALHWLNVSCLE 197 (212)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc
Confidence 344444444444433
No 124
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.01 E-value=3.2e-09 Score=91.06 Aligned_cols=197 Identities=7% Similarity=-0.160 Sum_probs=145.3
Q ss_pred hcccHHHHHHHHHHHHhcCCCChHHHHHH-------HHHHHhcCChhhHHHHHHHhhhcCCC------C-----------
Q 048394 262 KAELFEKAELALKKLEEMKPRDRKAYHFL-------ISLYCNTSNLDAVNRVWGILKSTFPP------T----------- 317 (485)
Q Consensus 262 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~------~----------- 317 (485)
..++...|.+.|.++....|.....|..+ ...+...++..++...+.......+. +
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 57888889999999888888888888887 56666666666666666665542221 1
Q ss_pred ----hhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCc----
Q 048394 318 ----NTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARF---- 389 (485)
Q Consensus 318 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~---- 389 (485)
......+...+...|++++|.++|..+...++ +......+...+.+.+++++|+..|+.... .|+
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p--~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-----~~d~~~~ 170 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGS--EHLVAWMKAVVYGAAERWTDVIDQVKSAGK-----WPDKFLA 170 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-----CSCHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHcCCHHHHHHHHHHhhc-----cCCcccH
Confidence 12334567778889999999999988876543 322555566788899999999999974433 232
Q ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCc--cHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHH
Q 048394 390 FKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRP--MQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYS 467 (485)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 467 (485)
...+..+..++.+.|++++|+..|++..... ..| ..........++.+.|+.++|..+|+++....|. ..++.
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~----~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~ 245 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSP----AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAA 245 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTST----TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC----CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHH
Confidence 2356677888899999999999999987432 213 3456677778889999999999999999999888 77777
Q ss_pred HHH
Q 048394 468 LLI 470 (485)
Q Consensus 468 ~l~ 470 (485)
.|.
T Consensus 246 aL~ 248 (282)
T 4f3v_A 246 ALK 248 (282)
T ss_dssp HHH
T ss_pred HHh
Confidence 664
No 125
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.01 E-value=4.7e-08 Score=81.89 Aligned_cols=127 Identities=15% Similarity=0.080 Sum_probs=51.2
Q ss_pred HhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC----CcccHHHHHHHHHHcCCCccHHHHHH
Q 048394 144 RYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLG----QPEKVRPLVNQMKQRNISLDNLTYIV 219 (485)
Q Consensus 144 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~p~~~~~~~ 219 (485)
...+..|...|...+++++|+..|++..+.| +...+..+...|.. + ++++|.+.|++..+.| +...+..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~ 90 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIV 90 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3344444444444444444444444444432 23333334444333 3 4444444444444332 2233333
Q ss_pred HHHHHHh----cCCHhHHHHHHHHHHhccCCC-CcHHHHHHHHHHHHh----cccHHHHHHHHHHHHh
Q 048394 220 WMQSYSH----LNDIDGVERVFYEMCNECEDK-CRWTTYSNLASIYVK----AELFEKAELALKKLEE 278 (485)
Q Consensus 220 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~ 278 (485)
+...|.. .+++++|+++|+...+ .+.. .....+..|..+|.. .+++++|...|++..+
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~-~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAAR-DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTS-STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHH-cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 3333333 3444444444444443 1110 013333444444444 3444444444444443
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.00 E-value=1.1e-08 Score=77.71 Aligned_cols=96 Identities=9% Similarity=0.021 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhc
Q 048394 252 TYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKL 331 (485)
Q Consensus 252 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 331 (485)
.+...+..|.+.|++++|+..|++..+..|.+..+|..+..+|...|++++|+..+++..+..+.+...|..+..++...
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 33444444555555555555555554444444555555555555555555555555555444444444444455555555
Q ss_pred CChhHHHHHHHHHHHc
Q 048394 332 NAIDILKQCFEEWESR 347 (485)
Q Consensus 332 ~~~~~a~~~~~~~~~~ 347 (485)
|++++|.+.|++..+.
T Consensus 95 ~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 95 REWSKAQRAYEDALQV 110 (126)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 5555555555544444
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.98 E-value=1.5e-08 Score=81.17 Aligned_cols=132 Identities=11% Similarity=-0.024 Sum_probs=97.5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHH
Q 048394 318 NTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFM 397 (485)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~ 397 (485)
...+..+...+...|++++|...|+...+..+. +..++..+..++...|++++|...+++..+.. +.+...|..+.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~a 88 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD---KKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cccHHHHHHHH
Confidence 455677777888888888888888888877554 67777778888888888888888888887764 34556777777
Q ss_pred HHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHH--HHHHHhhcCChhhHHHHHHHHhhc
Q 048394 398 IYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDT--FFRFFEEEKDVDGAEEFCKVLKSL 458 (485)
Q Consensus 398 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~A~~~~~~~~~~ 458 (485)
..+...|++++|...++++.... +.+...+.. ....+...|++++|...++...+.
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVK-----PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 88888888888888888888763 334444433 333466778888888888776553
No 128
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.97 E-value=1.8e-07 Score=82.75 Aligned_cols=173 Identities=8% Similarity=-0.006 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCCh------hhHHHHHHHHHhcCChhHHHHHHHHHHHccCC---CC--H
Q 048394 285 KAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTN------TSYLVLLQALAKLNAIDILKQCFEEWESRCSS---YD--M 353 (485)
Q Consensus 285 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~ 353 (485)
..+...+..+...|++++|...+.+..+..+... ..+..+...+...|++++|...+++..+.... +. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445566677777788888777776666544311 22344556667788999999998888754221 11 4
Q ss_pred HhHHHHHHHHHhcCcHHHHHHHHHHHHhc-ccccCCc-----hhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCc
Q 048394 354 RLADVIIRAYLQKDMYEEAALIFNNAKKR-ANASARF-----FKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRP 427 (485)
Q Consensus 354 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 427 (485)
.+++.+...|...|++++|...|++..+. .. .|+ ..++..+...|...|++++|+..+++.++.....+...
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~--~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEA--LHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--cCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 57888999999999999999999988742 11 222 25778888899999999999999999987642221111
Q ss_pred -cHHHHHHHHHHHhhcCChhhH-HHHHHHHhhcC
Q 048394 428 -MQVTVDTFFRFFEEEKDVDGA-EEFCKVLKSLN 459 (485)
Q Consensus 428 -~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~ 459 (485)
-..+|..+..++.+.|++++| ...++++....
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 266788888999999999999 78788877643
No 129
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.97 E-value=4e-09 Score=82.71 Aligned_cols=105 Identities=11% Similarity=-0.093 Sum_probs=65.8
Q ss_pred HHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHH
Q 048394 353 MRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTV 432 (485)
Q Consensus 353 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 432 (485)
...+..+...+...|++++|...|++....+ +.+...|..+..+|...|++++|+..|++++.. .+.+...+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~~~~ 92 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD---HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM-----DIXEPRFP 92 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCTHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCchHH
Confidence 4445556666666677777777776666553 334555666666666677777777777776665 33445566
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHH
Q 048394 433 DTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSA 465 (485)
Q Consensus 433 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 465 (485)
..+..++...|++++|...|+++.+..|.++..
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 666666667777777777777766666554433
No 130
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.97 E-value=1.8e-07 Score=82.79 Aligned_cols=164 Identities=9% Similarity=-0.084 Sum_probs=87.1
Q ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCChH------HHHHHHHHHHhcCChhhHHHHHHHhhhcCCC--C----hhhHHHH
Q 048394 257 ASIYVKAELFEKAELALKKLEEMKPRDRK------AYHFLISLYCNTSNLDAVNRVWGILKSTFPP--T----NTSYLVL 324 (485)
Q Consensus 257 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~----~~~~~~l 324 (485)
+..+...|++++|...+++..+..+.++. .+..+...+...|++++|...++++...... + ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 34444455555555555554442221111 1223444444555556666555555543222 1 1245566
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc-----cCCC-CHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccc--cCC-chhHHHH
Q 048394 325 LQALAKLNAIDILKQCFEEWESR-----CSSY-DMRLADVIIRAYLQKDMYEEAALIFNNAKKRANA--SAR-FFKSRES 395 (485)
Q Consensus 325 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~p-~~~~~~~ 395 (485)
...|...|++++|...|+++.+. +..+ ...++..+...|.+.|++++|...+++..+.... ..+ -...|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 66666666666666666665531 1111 1335666777777777777777777766543110 011 1456667
Q ss_pred HHHHHHhcc-cHHHHHHHHHHHHHHh
Q 048394 396 FMIYYLRSR-QLDLALNEMEAALSEA 420 (485)
Q Consensus 396 l~~~~~~~g-~~~~A~~~~~~~~~~~ 420 (485)
+...|.+.| ++++|.+.+++++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 777777777 3577777777776653
No 131
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.97 E-value=5e-07 Score=80.18 Aligned_cols=219 Identities=10% Similarity=0.039 Sum_probs=105.3
Q ss_pred CCHHHHHHHHHhhcc-cCCCHhHHHHHHHHHHhcC-cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhC-C-CcccHHH
Q 048394 125 NGIAAAEKYFNGLSE-YAKNRYTYGALLNCYCKEL-MTERALALFEKMDELKFLGNTVAFNNLSTMYLRL-G-QPEKVRP 200 (485)
Q Consensus 125 g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-g-~~~~a~~ 200 (485)
+..++|+++++.+.. .+.+..+|+.--..+...| .+++++++++.+...+.+ +..+|+.-...+.+. + +++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHH
Confidence 334455555555555 2233444555444444445 355555555555555443 444555544444443 3 4455555
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHH--------HHHHH
Q 048394 201 LVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFE--------KAELA 272 (485)
Q Consensus 201 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~ 272 (485)
+++.+.+. .+-+..+|+.-.-++.+.|.++ ++++.
T Consensus 147 ~~~k~L~~-------------------------------------dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~ 189 (349)
T 3q7a_A 147 YIHGSLLP-------------------------------------DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDW 189 (349)
T ss_dssp HHHHHTSS-------------------------------------CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHh-------------------------------------CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHH
Confidence 55555443 3333333333333333333332 55555
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhcCC-------hhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCCh-----------
Q 048394 273 LKKLEEMKPRDRKAYHFLISLYCNTSN-------LDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAI----------- 334 (485)
Q Consensus 273 ~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------- 334 (485)
++++.+..|.|..+|+.....+.+.+. ++++++.+.++....|.+...|+.+-..+.+.|..
T Consensus 190 ~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~ 269 (349)
T 3q7a_A 190 CNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPY 269 (349)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGG
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccccccccc
Confidence 555555555555555555555555443 34555555555555555555554444444443332
Q ss_pred ---------hHHHHHHHHHHHcc-----CCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 048394 335 ---------DILKQCFEEWESRC-----SSYDMRLADVIIRAYLQKDMYEEAALIFNNAKK 381 (485)
Q Consensus 335 ---------~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 381 (485)
....++..++.... ..++......++..|...|+.++|.++++.+.+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 270 TASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp TC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 11111111111111 123556666677777777777777777777654
No 132
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.96 E-value=6e-08 Score=81.32 Aligned_cols=131 Identities=15% Similarity=0.104 Sum_probs=58.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhc
Q 048394 324 LLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRS 403 (485)
Q Consensus 324 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 403 (485)
+...+...|++++|.+.|++.. .|+...+..+...|...|++++|...|++..+.. +.+...|..+...|...
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD---KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHc
Confidence 3344444444444444444331 2344444444444555555555555555444432 22333444444444555
Q ss_pred ccHHHHHHHHHHHHHHhhhcC----------CCc-cHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCC
Q 048394 404 RQLDLALNEMEAALSEAKQFH----------WRP-MQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCL 461 (485)
Q Consensus 404 g~~~~A~~~~~~~~~~~~~~~----------~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 461 (485)
|++++|+..|+++.+...... ..| ....+..+..++...|++++|...++++.+..|.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 555555555555444321000 001 1234444555555555555555555555555443
No 133
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.96 E-value=4.8e-08 Score=78.10 Aligned_cols=92 Identities=15% Similarity=-0.001 Sum_probs=40.6
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCCh
Q 048394 255 NLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAI 334 (485)
Q Consensus 255 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 334 (485)
.++..+...|++++|...|++.....|.+..++..+..++...|++++|...+++.....+.+...+..+..++...|++
T Consensus 18 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~ 97 (166)
T 1a17_A 18 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 97 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccH
Confidence 34444444444444444444444444444444444444444444444444444444444333333444444444444444
Q ss_pred hHHHHHHHHHHH
Q 048394 335 DILKQCFEEWES 346 (485)
Q Consensus 335 ~~a~~~~~~~~~ 346 (485)
++|.+.++++.+
T Consensus 98 ~~A~~~~~~a~~ 109 (166)
T 1a17_A 98 RAALRDYETVVK 109 (166)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 134
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.95 E-value=8.1e-08 Score=80.50 Aligned_cols=128 Identities=14% Similarity=-0.006 Sum_probs=85.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 048394 217 YIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCN 296 (485)
Q Consensus 217 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (485)
+..+...+...|++++|...|++.. .++...+..++.+|...|++++|...+++.....|.+...+..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 3445555666677777777666553 33566666677777777777777777777766666666777777777777
Q ss_pred cCChhhHHHHHHHhhhcCCCCh----------------hhHHHHHHHHHhcCChhHHHHHHHHHHHccC
Q 048394 297 TSNLDAVNRVWGILKSTFPPTN----------------TSYLVLLQALAKLNAIDILKQCFEEWESRCS 349 (485)
Q Consensus 297 ~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 349 (485)
.|++++|...+++.....+.+. ..+..+..++...|++++|.+.|+...+..+
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 7777777777777666554433 5666677777777777777777777766543
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.95 E-value=3.2e-07 Score=81.16 Aligned_cols=169 Identities=8% Similarity=-0.067 Sum_probs=117.6
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCh------HHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC------Chh
Q 048394 252 TYSNLASIYVKAELFEKAELALKKLEEMKPRDR------KAYHFLISLYCNTSNLDAVNRVWGILKSTFPP------TNT 319 (485)
Q Consensus 252 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~ 319 (485)
.+...+..+...|++++|.+.+....+..+... ..+..+...+...|++++|...+++....... ...
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456667777788888877777666443322 22344556667778888888888877654332 134
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH---ccCC-C--CHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccc--cCC-ch
Q 048394 320 SYLVLLQALAKLNAIDILKQCFEEWES---RCSS-Y--DMRLADVIIRAYLQKDMYEEAALIFNNAKKRANA--SAR-FF 390 (485)
Q Consensus 320 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~-~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~p-~~ 390 (485)
+++.+...|...|++++|...+++..+ .... + ...++..+...|...|++++|...+++..+.... ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 778888888899999999999988763 2111 1 1257788899999999999999999988754210 011 14
Q ss_pred hHHHHHHHHHHhcccHHHH-HHHHHHHHHHh
Q 048394 391 KSRESFMIYYLRSRQLDLA-LNEMEAALSEA 420 (485)
Q Consensus 391 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~ 420 (485)
.+|..+...|.+.|++++| ...+++.....
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 5677888889999999999 77788877653
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.95 E-value=4.8e-09 Score=92.20 Aligned_cols=180 Identities=9% Similarity=-0.095 Sum_probs=132.6
Q ss_pred CChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHH
Q 048394 282 RDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIR 361 (485)
Q Consensus 282 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 361 (485)
.+...+..+...+...|++++|...|++.....+.+...+..+..++.+.|++++|...+++..+..+. +...+..+..
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 456788899999999999999999999999998889999999999999999999999999999987655 6888889999
Q ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCch-hHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHh
Q 048394 362 AYLQKDMYEEAALIFNNAKKRANASARFF-KSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFE 440 (485)
Q Consensus 362 ~~~~~~~~~~A~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 440 (485)
+|...|++++|...|++..+.+ |+. ..+...+....+. .++..... ..... .+.+......+.. +.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~----p~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~----~~~~~~i~~~l~~-l~ 147 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA----KEQRLNFGDDIPSALRI---AKKKRWNS-IEERR----IHQESELHSYLTR-LI 147 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH----HHTTCCCCSHHHHHHHH---HHHHHHHH-HHHTC----CCCCCHHHHHHHH-HH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC----ccchhhHHHHHHHHHHH---HHHHHHHH-HHHHH----HhhhHHHHHHHHH-HH
Confidence 9999999999999999988763 221 1111122222211 11112211 22221 4445555444433 32
Q ss_pred hcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 048394 441 EEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAA 476 (485)
Q Consensus 441 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 476 (485)
.|++++|.+.++++.+..|.+......+...+.+.
T Consensus 148 -~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 182 (281)
T 2c2l_A 148 -AAERERELEECQRNHEGHEDDGHIRAQQACIEAKH 182 (281)
T ss_dssp -HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHH
Confidence 68999999999999999888777766666665554
No 137
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.95 E-value=1e-09 Score=99.16 Aligned_cols=87 Identities=11% Similarity=-0.038 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHH
Q 048394 391 KSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLI 470 (485)
Q Consensus 391 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 470 (485)
..|..+..+|.+.|++++|+..++++++. .+.+...+..+..++...|++++|...|+++++..|.+..++..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~ 271 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALEL-----DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLA 271 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 44555555555555555555555555554 2334555555555555555555555555555555555555555555
Q ss_pred HHHHHhCCCcch
Q 048394 471 KTYIAAGKLASD 482 (485)
Q Consensus 471 ~~~~~~g~~~~A 482 (485)
.++.+.|++++|
T Consensus 272 ~~~~~~~~~~~a 283 (336)
T 1p5q_A 272 VCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.94 E-value=3.5e-09 Score=82.92 Aligned_cols=93 Identities=16% Similarity=0.071 Sum_probs=37.6
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCC
Q 048394 254 SNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNA 333 (485)
Q Consensus 254 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 333 (485)
..+...+.+.|++++|...|+++....|.+...|..+..+|...|++++|...|+++....|.+...+..+..+|...|+
T Consensus 40 ~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~ 119 (151)
T 3gyz_A 40 YSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKA 119 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 33333344444444444444444443333444444444444444444444444444443333333333344444444444
Q ss_pred hhHHHHHHHHHHH
Q 048394 334 IDILKQCFEEWES 346 (485)
Q Consensus 334 ~~~a~~~~~~~~~ 346 (485)
+++|...|+...+
T Consensus 120 ~~eA~~~~~~al~ 132 (151)
T 3gyz_A 120 PLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444443333
No 139
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.93 E-value=3.2e-09 Score=88.11 Aligned_cols=125 Identities=10% Similarity=-0.077 Sum_probs=92.3
Q ss_pred HHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCC--------------chhHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 048394 353 MRLADVIIRAYLQKDMYEEAALIFNNAKKRANASAR--------------FFKSRESFMIYYLRSRQLDLALNEMEAALS 418 (485)
Q Consensus 353 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 418 (485)
...+..+...+...|++++|...|++..+.... .| ....|..+..+|...|++++|+..+++++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344555566666667777777777766654210 11 025677777888888999999999999888
Q ss_pred HhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcchh
Q 048394 419 EAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDM 483 (485)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 483 (485)
. .+.+...+..+..++...|++++|...|+++.+..|.+..++..+..++...++.+++.
T Consensus 117 ~-----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 117 I-----DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp H-----STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred h-----CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 7 44567788888888889999999999999999888888888888888888887776654
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.91 E-value=2.3e-08 Score=81.18 Aligned_cols=118 Identities=9% Similarity=0.058 Sum_probs=52.8
Q ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHH-HHhcCCh--hHHHHH
Q 048394 264 ELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQA-LAKLNAI--DILKQC 340 (485)
Q Consensus 264 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~a~~~ 340 (485)
|++++|...++......|.+...|..+...|...|++++|...++++....+.+...+..+..+ +...|++ ++|...
T Consensus 24 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~ 103 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAM 103 (177)
T ss_dssp ---CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 3444444444444444444444444444444444444444444444444444444444444444 3344444 444444
Q ss_pred HHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 048394 341 FEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKR 382 (485)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 382 (485)
++.+.+..+. +...+..+...|...|++++|...|+++.+.
T Consensus 104 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 104 IDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 4444444322 3344444444455555555555555554443
No 141
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.91 E-value=8.3e-08 Score=71.52 Aligned_cols=114 Identities=8% Similarity=-0.124 Sum_probs=97.2
Q ss_pred CHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHH
Q 048394 352 DMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVT 431 (485)
Q Consensus 352 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 431 (485)
....+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++.... .+.+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~ 74 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD---PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-----KPDWGKG 74 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-----CcccHHH
Confidence 34567778888899999999999999988764 346677888888899999999999999999987 4456788
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 048394 432 VDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTY 473 (485)
Q Consensus 432 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 473 (485)
+..+..++...|++++|.+.++++.+..|.++..+..+..+.
T Consensus 75 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 75 YSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 888889999999999999999999999999998888887764
No 142
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.90 E-value=4.7e-09 Score=82.21 Aligned_cols=103 Identities=7% Similarity=-0.112 Sum_probs=60.2
Q ss_pred cCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHH
Q 048394 279 MKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADV 358 (485)
Q Consensus 279 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 358 (485)
..|.+...+..+...+.+.|++++|...|+++....|.+...|..+..++...|++++|...|++..+..+. ++..|..
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~ 109 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFH 109 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHH
Confidence 444455555555556666666666666666666555555555666666666666666666666666555443 4455555
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhc
Q 048394 359 IIRAYLQKDMYEEAALIFNNAKKR 382 (485)
Q Consensus 359 l~~~~~~~~~~~~A~~~~~~~~~~ 382 (485)
+..+|...|++++|...|++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566666666666666666665554
No 143
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.90 E-value=6e-08 Score=73.59 Aligned_cols=115 Identities=12% Similarity=-0.002 Sum_probs=89.9
Q ss_pred HHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHH
Q 048394 353 MRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTV 432 (485)
Q Consensus 353 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 432 (485)
...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..+++.++. .+.+...|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~ 75 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA---PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-----DPNFVRAY 75 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCcHHHH
Confidence 3456667777888888888888888888764 445677778888888888888888888888887 34557778
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHhhcC------CCCHHHHHHHHHHHHH
Q 048394 433 DTFFRFFEEEKDVDGAEEFCKVLKSLN------CLDFSAYSLLIKTYIA 475 (485)
Q Consensus 433 ~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~ 475 (485)
..+..++...|++++|...++++.+.. |.+..++..+..+..+
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 888888888888888888888888888 7777777777766543
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.90 E-value=3e-08 Score=80.50 Aligned_cols=123 Identities=11% Similarity=0.032 Sum_probs=57.2
Q ss_pred cCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHH-HHhcccH--H
Q 048394 331 LNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIY-YLRSRQL--D 407 (485)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~ 407 (485)
.|++++|...++...+..+. +...+..+...|...|++++|...|++..+.. +.+...+..+... +...|++ +
T Consensus 23 ~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR---GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp ----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred ccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhcCCcchH
Confidence 34444555555544444332 34444455555555555555555555554442 2233344444444 4445554 5
Q ss_pred HHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCC
Q 048394 408 LALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLD 462 (485)
Q Consensus 408 ~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 462 (485)
+|...+++++.. .+.+...+..+...+...|++++|...++++.+..|.+
T Consensus 99 ~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 99 QTRAMIDKALAL-----DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 555555555554 22234444445555555555555555555555554443
No 145
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.88 E-value=9.2e-08 Score=72.10 Aligned_cols=94 Identities=17% Similarity=0.170 Sum_probs=37.3
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC
Q 048394 219 VWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTS 298 (485)
Q Consensus 219 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 298 (485)
.+...+...|++++|.+.++++.+ ..+.+..++..++.++...|++++|...++++....|.+..++..+...+...|
T Consensus 14 ~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 91 (125)
T 1na0_A 14 NLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG 91 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--HCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc
Confidence 333334444444444444444333 122233333334444444444444444444443333333334444444444444
Q ss_pred ChhhHHHHHHHhhhcC
Q 048394 299 NLDAVNRVWGILKSTF 314 (485)
Q Consensus 299 ~~~~a~~~~~~~~~~~ 314 (485)
++++|...++++....
T Consensus 92 ~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 92 DYDEAIEYYQKALELD 107 (125)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 4444444444433333
No 146
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.88 E-value=2.3e-06 Score=75.63 Aligned_cols=200 Identities=11% Similarity=-0.042 Sum_probs=154.9
Q ss_pred hcccH-HHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC----------hhhHHHHHHHhhhcCCCChhhHHHHHHHHHh
Q 048394 262 KAELF-EKAELALKKLEEMKPRDRKAYHFLISLYCNTSN----------LDAVNRVWGILKSTFPPTNTSYLVLLQALAK 330 (485)
Q Consensus 262 ~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 330 (485)
+.|.+ ++|+..++.+....|.+..+|+.--..+...+. +++++.+++.+....|.+..+|+.-...+..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 34443 367777777777777777777665554444333 5789999999999999999999888888888
Q ss_pred cCC--hhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCc-HHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhc----
Q 048394 331 LNA--IDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDM-YEEAALIFNNAKKRANASARFFKSRESFMIYYLRS---- 403 (485)
Q Consensus 331 ~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---- 403 (485)
.++ +++++++++.+.+..+. |...|+.-.-++...|. +++++..++++++.+ +-|...|+.....+.+.
T Consensus 121 l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~---p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 121 LPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---FSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHHSCCC
T ss_pred cCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHhhhcc
Confidence 884 89999999999998777 88888887777778888 699999999999886 45667777766655544
Q ss_pred ----------ccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhc-----------CChhhHHHHHHHHhhcCCCC
Q 048394 404 ----------RQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEE-----------KDVDGAEEFCKVLKSLNCLD 462 (485)
Q Consensus 404 ----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~ 462 (485)
+.++++++++.+.+.. .+-|...|+.+-..+.+. +.++++.+.++++.+..|.+
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~-----~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFT-----DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred ccccccccchHHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 5689999999999998 566788887666655555 45789999999999999988
Q ss_pred HHHHHHHH
Q 048394 463 FSAYSLLI 470 (485)
Q Consensus 463 ~~~~~~l~ 470 (485)
.-.+..++
T Consensus 272 ~w~l~~~~ 279 (331)
T 3dss_A 272 KWCLLTII 279 (331)
T ss_dssp HHHHHHHH
T ss_pred chHHHHHH
Confidence 55544444
No 147
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.88 E-value=6e-08 Score=73.84 Aligned_cols=109 Identities=12% Similarity=0.012 Sum_probs=44.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC
Q 048394 219 VWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTS 298 (485)
Q Consensus 219 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 298 (485)
.+...+...|++++|...++.... ..+.+...+..++.++...|++++|...+++.....|.+...+..+...+...|
T Consensus 17 ~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (131)
T 2vyi_A 17 TEGNEQMKVENFEAAVHFYGKAIE--LNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLN 94 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhC
Confidence 333344444444444444444433 222233334444444444444444444444444433333444444444444444
Q ss_pred ChhhHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 048394 299 NLDAVNRVWGILKSTFPPTNTSYLVLLQALA 329 (485)
Q Consensus 299 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 329 (485)
++++|...+++.....+.+...+..+..++.
T Consensus 95 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 125 (131)
T 2vyi_A 95 KHVEAVAYYKKALELDPDNETYKSNLKIAEL 125 (131)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 4444444444444333333333333333333
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.87 E-value=3.3e-08 Score=77.42 Aligned_cols=100 Identities=9% Similarity=-0.048 Sum_probs=60.6
Q ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHH
Q 048394 248 CRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQA 327 (485)
Q Consensus 248 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 327 (485)
.+...+..+...+...|++++|...|+++....|.+...|..+..+|...|++++|...|+++....|.+...+..+..+
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 34445555556666666666666666666665555666666666666666666666666666666555555556666666
Q ss_pred HHhcCChhHHHHHHHHHHHc
Q 048394 328 LAKLNAIDILKQCFEEWESR 347 (485)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~~ 347 (485)
+...|++++|.+.|+...+.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666655554
No 149
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.87 E-value=8e-08 Score=73.48 Aligned_cols=13 Identities=15% Similarity=-0.051 Sum_probs=4.6
Q ss_pred cccHHHHHHHHHH
Q 048394 263 AELFEKAELALKK 275 (485)
Q Consensus 263 ~~~~~~A~~~~~~ 275 (485)
.|++++|...+++
T Consensus 63 ~~~~~~A~~~~~~ 75 (133)
T 2lni_A 63 LLEFQLALKDCEE 75 (133)
T ss_dssp TTCHHHHHHHHHH
T ss_pred hccHHHHHHHHHH
Confidence 3333333333333
No 150
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.86 E-value=8.2e-08 Score=79.71 Aligned_cols=161 Identities=13% Similarity=0.082 Sum_probs=83.2
Q ss_pred cCChhhHHHHHHHhhhcCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcc----C-CCCHHhHHHHHHHHHhcCcHH
Q 048394 297 TSNLDAVNRVWGILKSTFPP-TNTSYLVLLQALAKLNAIDILKQCFEEWESRC----S-SYDMRLADVIIRAYLQKDMYE 370 (485)
Q Consensus 297 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~ 370 (485)
.|++++|.+.++.+.. .+. ...++..+...+...|++++|...+++..+.. . .....++..+...|...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4445555543332222 121 34445555555555555555555555544311 0 012345555666666777777
Q ss_pred HHHHHHHHHHhcccccCC-----chhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCc-cHHHHHHHHHHHhhcCC
Q 048394 371 EAALIFNNAKKRANASAR-----FFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRP-MQVTVDTFFRFFEEEKD 444 (485)
Q Consensus 371 ~A~~~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 444 (485)
+|...+++..+.... .+ ....+..+...+...|++++|...+++........+... ...++..+...+...|+
T Consensus 84 ~A~~~~~~al~~~~~-~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 84 AARRCFLEERELLAS-LPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHH-cCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 777776665543100 11 123355566666677777777777777665432211111 12234556666777777
Q ss_pred hhhHHHHHHHHhhcC
Q 048394 445 VDGAEEFCKVLKSLN 459 (485)
Q Consensus 445 ~~~A~~~~~~~~~~~ 459 (485)
+++|.+.++++.+..
T Consensus 163 ~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 163 LLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777766643
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.86 E-value=1.3e-08 Score=79.31 Aligned_cols=105 Identities=11% Similarity=-0.116 Sum_probs=60.1
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHH
Q 048394 355 LADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDT 434 (485)
Q Consensus 355 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (485)
.+..+...+.+.|++++|...|++....+ +.+...|..+...|...|++++|+..|++++.. .+.+...+..
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~ 91 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD---HYDARYFLGLGACRQSLGLYEQALQSYSYGALM-----DINEPRFPFH 91 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCTHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCcHHHHH
Confidence 33445555556666666666666665543 334445555555666666666666666666665 2334455555
Q ss_pred HHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHH
Q 048394 435 FFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYS 467 (485)
Q Consensus 435 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 467 (485)
+..++...|++++|...|+++.+..|.++..+.
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 666666666666666666666665555444433
No 152
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.85 E-value=7.5e-08 Score=79.93 Aligned_cols=157 Identities=13% Similarity=-0.014 Sum_probs=90.3
Q ss_pred cccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhc----CC-C-ChhhHHHHHHHHHhcCChhH
Q 048394 263 AELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKST----FP-P-TNTSYLVLLQALAKLNAIDI 336 (485)
Q Consensus 263 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~-~~~~~~~l~~~~~~~~~~~~ 336 (485)
.|++++|.+.++.+...++....++..+...+...|++++|...+++.... +. + ...++..+...+...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555333332222233445555555555555555555555554431 11 1 34455666666777777777
Q ss_pred HHHHHHHHHHc---cC-CC--CHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCc----hhHHHHHHHHHHhcccH
Q 048394 337 LKQCFEEWESR---CS-SY--DMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARF----FKSRESFMIYYLRSRQL 406 (485)
Q Consensus 337 a~~~~~~~~~~---~~-~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~ 406 (485)
|.+.+++..+. .. .+ ....+..+...+...|++++|...+++..+.... ..+ ..++..+...+...|++
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQ-ADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHCcCH
Confidence 77777665543 11 11 2345666777788888888888888877643110 111 22356677778888899
Q ss_pred HHHHHHHHHHHHHh
Q 048394 407 DLALNEMEAALSEA 420 (485)
Q Consensus 407 ~~A~~~~~~~~~~~ 420 (485)
++|...+++..+..
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99988888887754
No 153
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.83 E-value=8.5e-08 Score=73.90 Aligned_cols=117 Identities=17% Similarity=-0.034 Sum_probs=72.8
Q ss_pred CHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHH
Q 048394 352 DMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVT 431 (485)
Q Consensus 352 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 431 (485)
+...+..+...+...|++++|...|++..... +.+...|..+...+...|++++|+..+++.+.. .+.+...
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~ 79 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN---PLVAVYYTNRALCYLKMQQPEQALADCRRALEL-----DGQSVKA 79 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC---cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CchhHHH
Confidence 45556666666666667777776666666553 334455666666666677777777777766665 3334556
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHhhcCCC-----CHHHHHHHHHHHHHh
Q 048394 432 VDTFFRFFEEEKDVDGAEEFCKVLKSLNCL-----DFSAYSLLIKTYIAA 476 (485)
Q Consensus 432 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~ 476 (485)
+..+..++...|++++|...++++.+..|. +..+...+..+..+.
T Consensus 80 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 80 HFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 666666666677777777777766666554 555555555554443
No 154
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.82 E-value=4.3e-08 Score=84.05 Aligned_cols=198 Identities=7% Similarity=-0.119 Sum_probs=142.9
Q ss_pred hcCCHhHHHHHHHHHHhccCCCCcHHHHHHH-------HHHHHhcccHHHHHHHHHHHHhcCCCC---------------
Q 048394 226 HLNDIDGVERVFYEMCNECEDKCRWTTYSNL-------ASIYVKAELFEKAELALKKLEEMKPRD--------------- 283 (485)
Q Consensus 226 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~~~--------------- 283 (485)
..++...|.+.|.++.. -.|-....|..+ ...+...++..+++..+.......|..
T Consensus 18 ~~~d~~~A~~~F~~a~~--~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITN--YDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHH--hChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 57888889999988887 566667777666 456666666666666665555433211
Q ss_pred ------hHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCC--HHh
Q 048394 284 ------RKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYD--MRL 355 (485)
Q Consensus 284 ------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~ 355 (485)
...+..+...+...|++++|.++|..+...++.+. ....+...+.+.+++++|+..|+...+.. .|. ...
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 23345577788899999999999999888776555 66777778899999999999998554321 111 235
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCc--hhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHH
Q 048394 356 ADVIIRAYLQKDMYEEAALIFNNAKKRANASARF--FKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVD 433 (485)
Q Consensus 356 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 433 (485)
+..+..++...|++++|+..|++...... .|. .........++.+.|+.++|...|+++.... |+...+.
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~--~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~------P~~~~~~ 245 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPA--GEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH------PEPKVAA 245 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTT--TTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS------CCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCC--CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CcHHHHH
Confidence 66788999999999999999999885432 254 2345566677889999999999999999975 6644444
Q ss_pred HH
Q 048394 434 TF 435 (485)
Q Consensus 434 ~l 435 (485)
.|
T Consensus 246 aL 247 (282)
T 4f3v_A 246 AL 247 (282)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 155
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.81 E-value=1.3e-07 Score=75.65 Aligned_cols=102 Identities=16% Similarity=-0.068 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHH
Q 048394 355 LADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDT 434 (485)
Q Consensus 355 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (485)
.+..+...+...|++++|...|++.++.. +.+...|..+...|.+.|++++|+..+++.+.. .+.+...|..
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~ 84 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA---PANPIYLSNRAAAYSASGQHEKAAEDAELATVV-----DPKYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHHH
Confidence 34444444445555555555555444432 223344444444445555555555555555444 2223444444
Q ss_pred HHHHHhhcCChhhHHHHHHHHhhcCCCCHH
Q 048394 435 FFRFFEEEKDVDGAEEFCKVLKSLNCLDFS 464 (485)
Q Consensus 435 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 464 (485)
+..++...|++++|...|+++++..|.+..
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 445555555555555555555554444433
No 156
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.80 E-value=1.6e-07 Score=84.84 Aligned_cols=87 Identities=6% Similarity=-0.110 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHH
Q 048394 285 KAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYL 364 (485)
Q Consensus 285 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 364 (485)
.+|..+..+|.+.|++++|...++++....+.+...+..+..++...|++++|...|+++.+..+. +...+..+..++.
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 344444444444444444444444444444334444444444444444444444444444443322 3333444444444
Q ss_pred hcCcHHHH
Q 048394 365 QKDMYEEA 372 (485)
Q Consensus 365 ~~~~~~~A 372 (485)
..|+.++|
T Consensus 276 ~~~~~~~a 283 (336)
T 1p5q_A 276 RIRRQLAR 283 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.80 E-value=6.9e-08 Score=75.05 Aligned_cols=99 Identities=9% Similarity=-0.052 Sum_probs=59.4
Q ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHH
Q 048394 249 RWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQAL 328 (485)
Q Consensus 249 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 328 (485)
+...+..+...+.+.|++++|...|+.+....|.+...|..+..++...|++++|...|++.....|.+...+..+..++
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 33444455555566666666666666666655556666666666666666666666666666665555555555666666
Q ss_pred HhcCChhHHHHHHHHHHHc
Q 048394 329 AKLNAIDILKQCFEEWESR 347 (485)
Q Consensus 329 ~~~~~~~~a~~~~~~~~~~ 347 (485)
...|++++|.+.|+...+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666655544
No 158
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.80 E-value=1.8e-07 Score=70.87 Aligned_cols=96 Identities=9% Similarity=0.041 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhc
Q 048394 252 TYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKL 331 (485)
Q Consensus 252 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 331 (485)
.+..+...+.+.|++++|...|++..+..|.+...|..+..++...|++++|...+++.....+.+...+..+..++...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 44445555556666666666666655555555566666666666666666666666665555555555555556666666
Q ss_pred CChhHHHHHHHHHHHc
Q 048394 332 NAIDILKQCFEEWESR 347 (485)
Q Consensus 332 ~~~~~a~~~~~~~~~~ 347 (485)
|++++|...|++..+.
T Consensus 86 ~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 86 KEYASALETLDAARTK 101 (126)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHh
Confidence 6666666666555544
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=2.5e-07 Score=72.22 Aligned_cols=115 Identities=12% Similarity=-0.097 Sum_probs=94.9
Q ss_pred CHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCc----hhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCc
Q 048394 352 DMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARF----FKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRP 427 (485)
Q Consensus 352 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 427 (485)
+...+..+...+...|++++|...|++..+. .|+ ...|..+...|...|++++|+..+++.+.. .+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~ 97 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-----DGG 97 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TSC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-----Ccc
Confidence 5667777888888889999999999988876 444 567777888888999999999999998887 345
Q ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 048394 428 MQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIA 475 (485)
Q Consensus 428 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 475 (485)
+...+..+..++...|++++|...++++.+..|.+..++..+..+..+
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 677888888899999999999999999999999888888877776543
No 160
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.78 E-value=1.7e-08 Score=83.66 Aligned_cols=62 Identities=10% Similarity=-0.089 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 048394 286 AYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESR 347 (485)
Q Consensus 286 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 347 (485)
.+..+..+|...|++++|...+++.....+.+...+..+..++...|++++|.+.|+...+.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443334444444444444444444444444444433
No 161
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.76 E-value=1.7e-07 Score=74.67 Aligned_cols=123 Identities=14% Similarity=0.000 Sum_probs=87.4
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhc-------ccc--------cCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 048394 355 LADVIIRAYLQKDMYEEAALIFNNAKKR-------ANA--------SARFFKSRESFMIYYLRSRQLDLALNEMEAALSE 419 (485)
Q Consensus 355 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~--------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 419 (485)
.+......+.+.|++++|...|.+.+.. +.+ .+.+...|..+..+|.+.|++++|+..+++++..
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444555556666666666666655543 000 0223356777888888999999999999999887
Q ss_pred hhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCH-HHHHHHHHHHHHhCCCcch
Q 048394 420 AKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDF-SAYSLLIKTYIAAGKLASD 482 (485)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A 482 (485)
.+.+...|..+..++...|++++|...|+++++..|.++ .+...+..+..+.++.++.
T Consensus 93 -----~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~ 151 (162)
T 3rkv_A 93 -----EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKAD 151 (162)
T ss_dssp -----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTS
T ss_pred -----CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888999999999999999999999999888 6666666666655544443
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.75 E-value=2.4e-07 Score=70.41 Aligned_cols=120 Identities=9% Similarity=-0.005 Sum_probs=88.4
Q ss_pred HHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCcc----
Q 048394 353 MRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPM---- 428 (485)
Q Consensus 353 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---- 428 (485)
...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++...... ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~ 78 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD---PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE--NREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--STTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc--cchhHHHH
Confidence 3456667777888888888888888887764 345566777777888888888888888888876521 1122
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCC
Q 048394 429 QVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGK 478 (485)
Q Consensus 429 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 478 (485)
..++..+..++...|++++|.+.++++.+..| ++..+..+..+....++
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 66777778888888888888888888888776 67777777776665543
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.75 E-value=5.7e-07 Score=66.86 Aligned_cols=98 Identities=17% Similarity=0.098 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 048394 217 YIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCN 296 (485)
Q Consensus 217 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (485)
+..+...+...|++++|...++.... ..+.+...+..++.++...|++++|...+++..+..|.+...+..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 33344444444444444444444443 2233344444444444444444444444444444444444444444444444
Q ss_pred cCChhhHHHHHHHhhhcCCC
Q 048394 297 TSNLDAVNRVWGILKSTFPP 316 (485)
Q Consensus 297 ~~~~~~a~~~~~~~~~~~~~ 316 (485)
.|++++|...+++.....+.
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTT
T ss_pred HhhHHHHHHHHHHHHHcCCC
Confidence 44444444444444444333
No 164
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.71 E-value=1.2e-08 Score=96.46 Aligned_cols=88 Identities=11% Similarity=-0.048 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHH
Q 048394 391 KSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLI 470 (485)
Q Consensus 391 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 470 (485)
..|..+..+|.+.|++++|+..+++++.. .+.+...|..+..+|...|++++|...|+++++..|.+..++..++
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~ 392 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGL-----DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIS 392 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45666666677777777777777777766 3445666666777777777777777777777777777777777777
Q ss_pred HHHHHhCCCcchh
Q 048394 471 KTYIAAGKLASDM 483 (485)
Q Consensus 471 ~~~~~~g~~~~A~ 483 (485)
.++.+.|++++|.
T Consensus 393 ~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 393 MCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777766666554
No 165
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.69 E-value=7.9e-07 Score=67.50 Aligned_cols=109 Identities=11% Similarity=-0.066 Sum_probs=81.2
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcccccCCch----hHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCcc---HH
Q 048394 358 VIIRAYLQKDMYEEAALIFNNAKKRANASARFF----KSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPM---QV 430 (485)
Q Consensus 358 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~ 430 (485)
.+...+...|++++|...|+++.+.. |+. ..+..+...+.+.|++++|...++++.+.. +.+ ..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~ 77 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY----PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-----PTHDKAAG 77 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC----SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC----CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-----CCCcccHH
Confidence 35666778888888888888887763 332 366677778888888888888888888863 223 56
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 048394 431 TVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIA 475 (485)
Q Consensus 431 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 475 (485)
.+..+..++...|++++|...++++.+..|.++.+.......-.-
T Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 78 GLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 677777888888888888888888888888877766655544433
No 166
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.69 E-value=7.7e-07 Score=67.42 Aligned_cols=107 Identities=12% Similarity=0.073 Sum_probs=62.1
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCcc----HH
Q 048394 355 LADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPM----QV 430 (485)
Q Consensus 355 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~ 430 (485)
.+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..+++.++..+. ..++ ..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~---p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~a~ 84 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD---PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE--TRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTCCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc--cchhhHHHHH
Confidence 44456666666666666666666666553 334455666666666666666666666666655421 1111 23
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHH
Q 048394 431 TVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYS 467 (485)
Q Consensus 431 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 467 (485)
+|..+..++...|++++|.+.|++.++..| ++....
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~ 120 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVK 120 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHH
Confidence 455556666666777777777776666543 444333
No 167
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.68 E-value=1.5e-06 Score=83.85 Aligned_cols=172 Identities=8% Similarity=-0.101 Sum_probs=122.7
Q ss_pred hhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCC----------hhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcC--c
Q 048394 301 DAVNRVWGILKSTFPPTNTSYLVLLQALAKLNA----------IDILKQCFEEWESRCSSYDMRLADVIIRAYLQKD--M 368 (485)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~ 368 (485)
++|++.++++....|.+..+|+.-..++...|+ ++++++.++.+.+..++ +..+|+.-.-++.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccccc
Confidence 455666666666666666666555555555555 67777777777776665 6667766666666667 6
Q ss_pred HHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcc-cHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhc-----
Q 048394 369 YEEAALIFNNAKKRANASARFFKSRESFMIYYLRSR-QLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEE----- 442 (485)
Q Consensus 369 ~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 442 (485)
+++++..++++.+.+ +-+...|+.-...+.+.| .++++++.++++++. .+-+...|+.....+.+.
T Consensus 125 ~~~el~~~~k~l~~d---~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~-----~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 125 WARELELCARFLEAD---ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-----NFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT-----TCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHhhc---cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH-----CCCCccHHHHHHHHHHhhccccc
Confidence 677778887777765 445666766666666667 777788888777776 445666776666555442
Q ss_pred ---------CChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcc
Q 048394 443 ---------KDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLAS 481 (485)
Q Consensus 443 ---------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 481 (485)
+.++++.+.+++++...|.+..+|..+...+.+.+++++
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999999999999999999999999999888655
No 168
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.67 E-value=7.4e-07 Score=67.51 Aligned_cols=109 Identities=14% Similarity=0.076 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCc----hhHHH
Q 048394 319 TSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARF----FKSRE 394 (485)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~----~~~~~ 394 (485)
.++..+...+.+.|++++|++.|++..+..+. +...|..+..+|...|++++|+..+++.++.+....++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 34556677777777777777777777776554 56677777777777778888877777776642100111 12455
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHH
Q 048394 395 SFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDT 434 (485)
Q Consensus 395 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (485)
.+...+...|++++|++.|++.+... |++.+...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~------~~~~~~~~ 121 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEF------RDPELVKK 121 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS------CCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC------cCHHHHHH
Confidence 66667777888888888888877653 66555443
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.67 E-value=4.1e-07 Score=66.94 Aligned_cols=103 Identities=9% Similarity=-0.169 Sum_probs=80.7
Q ss_pred CHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCc--cH
Q 048394 352 DMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRP--MQ 429 (485)
Q Consensus 352 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~ 429 (485)
+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+. .+. +.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~ 76 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD---PEESKYWLMKGKALYNLERYEEAVDCYNYVINV-----IEDEYNK 76 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----SCCTTCH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CcccchH
Confidence 34566667778888888888888888887764 345567777888888888888888888888876 333 57
Q ss_pred HHHHHHHHHHhhc-CChhhHHHHHHHHhhcCCCC
Q 048394 430 VTVDTFFRFFEEE-KDVDGAEEFCKVLKSLNCLD 462 (485)
Q Consensus 430 ~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~ 462 (485)
..+..+..++... |++++|.+.++++.+..|.+
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 77 DVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 7888888888888 88888988888888877764
No 170
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.66 E-value=5.8e-07 Score=71.70 Aligned_cols=100 Identities=11% Similarity=-0.021 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 048394 215 LTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLY 294 (485)
Q Consensus 215 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 294 (485)
..+..+...+...|++++|+..|++..+ ..+.+...+..+..+|...|++++|+..|++..+..|.+...|..+..+|
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3444444555555555555555555554 23334455555555555555555555555555555555555555555555
Q ss_pred HhcCChhhHHHHHHHhhhcCCC
Q 048394 295 CNTSNLDAVNRVWGILKSTFPP 316 (485)
Q Consensus 295 ~~~~~~~~a~~~~~~~~~~~~~ 316 (485)
...|++++|...|++.....+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHccCHHHHHHHHHHHHHhCCC
Confidence 5555555555555555544444
No 171
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.66 E-value=7.3e-07 Score=68.54 Aligned_cols=100 Identities=8% Similarity=-0.081 Sum_probs=57.0
Q ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHH
Q 048394 248 CRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQA 327 (485)
Q Consensus 248 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 327 (485)
.+...+..+...+...|++++|...|+......|.+...|..+..++...|++++|...+++.....+.+...+..+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34455555555555556666666666555555555555555555555556666666655555555555555555555555
Q ss_pred HHhcCChhHHHHHHHHHHHc
Q 048394 328 LAKLNAIDILKQCFEEWESR 347 (485)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~~ 347 (485)
+...|++++|...|+...+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 55555555555555555443
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.63 E-value=3.1e-07 Score=67.61 Aligned_cols=89 Identities=7% Similarity=-0.088 Sum_probs=33.8
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHhc-
Q 048394 221 MQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPR--DRKAYHFLISLYCNT- 297 (485)
Q Consensus 221 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~- 297 (485)
...+...|++++|...++...+ ..+.+...+..+..++...|++++|...+++..+..|. +...+..+..++...
T Consensus 13 ~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~ 90 (112)
T 2kck_A 13 GVLQYDAGNYTESIDLFEKAIQ--LDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIE 90 (112)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCS
T ss_pred HHHHHHhhhHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHh
Confidence 3333333444444444443333 12223333333333333334444444444333333333 333333333333333
Q ss_pred CChhhHHHHHHHhh
Q 048394 298 SNLDAVNRVWGILK 311 (485)
Q Consensus 298 ~~~~~a~~~~~~~~ 311 (485)
|++++|.+.++...
T Consensus 91 ~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 91 GKEVEAEIAEARAK 104 (112)
T ss_dssp SCSHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHh
Confidence 33333333333333
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.62 E-value=5.3e-07 Score=67.67 Aligned_cols=99 Identities=12% Similarity=-0.057 Sum_probs=62.9
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHH
Q 048394 356 ADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTF 435 (485)
Q Consensus 356 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 435 (485)
+..+...+.+.|++++|...|++..+.. +.+...|..+...+...|++++|+..|++.++. .+.+...+..+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~~~~~~~l 91 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE---PEREEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKDIAVHAAL 91 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHH
Confidence 3345556667777777777777776653 335556666666677777777777777777766 33355666666
Q ss_pred HHHHhhcCChhhHHHHHHHHhhcCCCC
Q 048394 436 FRFFEEEKDVDGAEEFCKVLKSLNCLD 462 (485)
Q Consensus 436 ~~~~~~~~~~~~A~~~~~~~~~~~~~~ 462 (485)
..++...|++++|...++++++..|.+
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 92 AVSHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 677777777777777777777766643
No 174
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.62 E-value=2.5e-06 Score=80.07 Aligned_cols=171 Identities=12% Similarity=-0.005 Sum_probs=102.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhhcCCC--Ch----hhHHHHHHHHHhcCChhHHHHHHHHHHHc----cCCC-CHHh
Q 048394 287 YHFLISLYCNTSNLDAVNRVWGILKSTFPP--TN----TSYLVLLQALAKLNAIDILKQCFEEWESR----CSSY-DMRL 355 (485)
Q Consensus 287 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 355 (485)
+..++..|...|++++|.+.+..+...... +. .+.+.+...+...|+.+.|.+++...... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 556666677777777777666665543222 11 12222333334456777777777765432 1121 2456
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcccc--cC-CchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCcc--HH
Q 048394 356 ADVIIRAYLQKDMYEEAALIFNNAKKRANA--SA-RFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPM--QV 430 (485)
Q Consensus 356 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~ 430 (485)
+..+...|...|++++|..+++++...-.. .. .....+..++..|...|++++|..++++..........++. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 667778888888888888888776543110 01 12345667777788888888888888887765432212221 23
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHhh
Q 048394 431 TVDTFFRFFEEEKDVDGAEEFCKVLKS 457 (485)
Q Consensus 431 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 457 (485)
.+..+...+...|++++|...+..+.+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455556677778888888877777665
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.62 E-value=1.8e-07 Score=69.86 Aligned_cols=111 Identities=9% Similarity=-0.028 Sum_probs=65.7
Q ss_pred cCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCCh
Q 048394 366 KDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDV 445 (485)
Q Consensus 366 ~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 445 (485)
.|++++|...|++.++.+...+.+...+..+...|...|++++|+..++++++. .+.+...+..+..++...|++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~ 77 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-----FPNHQALRVFYAMVLYNLGRY 77 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCchHHHHHHHHHHHHcCCH
Confidence 456666777777766653100223455666666677777777777777777766 334566666667777777777
Q ss_pred hhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcc
Q 048394 446 DGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLAS 481 (485)
Q Consensus 446 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 481 (485)
++|...++++.+..|.++...........-.+.+++
T Consensus 78 ~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~~~l~~ 113 (117)
T 3k9i_A 78 EQGVELLLKIIAETSDDETIQSYKQAILFYADKLDE 113 (117)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHTHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 777777777777766666554444444434444443
No 176
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.62 E-value=3.4e-07 Score=83.55 Aligned_cols=121 Identities=12% Similarity=-0.014 Sum_probs=94.9
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHh----------------cccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 048394 356 ADVIIRAYLQKDMYEEAALIFNNAKK----------------RANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSE 419 (485)
Q Consensus 356 ~~~l~~~~~~~~~~~~A~~~~~~~~~----------------~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 419 (485)
+..+...+.+.|++++|...|++.++ .. ..+...|..+..+|.+.|++++|+..++++++.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~---~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ---PVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH---HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 34445555556666666666655554 11 234467788888899999999999999999986
Q ss_pred hhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcchhc
Q 048394 420 AKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDMR 484 (485)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 484 (485)
.+.+...+..+..++...|++++|...++++.+..|.+..++..+..++...++.+++.+
T Consensus 303 -----~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 -----DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888889999999999999999999999999999999999999999888877754
No 177
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.60 E-value=1.9e-05 Score=73.99 Aligned_cols=56 Identities=13% Similarity=0.233 Sum_probs=32.1
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhCCCCCCh----------------hhHHHHHHHHHhCCCcccHHHHHHHHH
Q 048394 151 LNCYCKELMTERALALFEKMDELKFLGNT----------------VAFNNLSTMYLRLGQPEKVRPLVNQMK 206 (485)
Q Consensus 151 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~ 206 (485)
...+.+.|++++|++.|.++.+....... .++..+...|...|++++|.+.+..+.
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34566778888888888888775432111 113445555555555555555555443
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.59 E-value=2.5e-07 Score=87.64 Aligned_cols=116 Identities=12% Similarity=0.016 Sum_probs=72.5
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHh
Q 048394 361 RAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFE 440 (485)
Q Consensus 361 ~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 440 (485)
..+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..++++++. .+.+...+..+..++.
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-----DKKYIKGYYRRAASNM 85 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHH
Confidence 34455666666666666666653 334555666666666667777777777666665 2334556666666666
Q ss_pred hcCChhhHHHHHHHHhhcCCCCHHHHHHHHHH--HHHhCCCcchhc
Q 048394 441 EEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKT--YIAAGKLASDMR 484 (485)
Q Consensus 441 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~ 484 (485)
..|++++|.+.++++.+..|.+..++..++.+ +.+.|++++|++
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~ 131 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 131 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC--
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67777777777777766666666666666666 666666666653
No 179
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=2.2e-06 Score=66.68 Aligned_cols=97 Identities=19% Similarity=-0.017 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCc---HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 048394 216 TYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCR---WTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLIS 292 (485)
Q Consensus 216 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 292 (485)
.+..+...+...|++++|.+.|+...+ ..+.+ ...+..+..+|...|++++|...+++..+..|.+...+..+..
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 334444444444444444444444443 11111 3334444444444444444444444444433334444444444
Q ss_pred HHHhcCChhhHHHHHHHhhhcC
Q 048394 293 LYCNTSNLDAVNRVWGILKSTF 314 (485)
Q Consensus 293 ~~~~~~~~~~a~~~~~~~~~~~ 314 (485)
++...|++++|...|++.....
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHcC
Confidence 4444444444444444444333
No 180
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.57 E-value=8.4e-07 Score=65.24 Aligned_cols=91 Identities=9% Similarity=-0.045 Sum_probs=81.5
Q ss_pred chhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCC------
Q 048394 389 FFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLD------ 462 (485)
Q Consensus 389 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------ 462 (485)
+...+..+...+...|++++|+..|++.++. .+.+...+..+..++...|++++|...++++++..|.+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 77 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA-----QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHH
Confidence 4466778888899999999999999999987 45578889999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHhCCCcchhc
Q 048394 463 FSAYSLLIKTYIAAGKLASDMR 484 (485)
Q Consensus 463 ~~~~~~l~~~~~~~g~~~~A~~ 484 (485)
..++..++.++...|++++|+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHHHHhHhhhHh
Confidence 8899999999999999998875
No 181
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.56 E-value=6.9e-07 Score=67.02 Aligned_cols=91 Identities=11% Similarity=0.045 Sum_probs=45.8
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChh
Q 048394 256 LASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAID 335 (485)
Q Consensus 256 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 335 (485)
+...+.+.|++++|...|+++.+..|.+...|..+..++...|++++|...+++..+..|.+...+..+..++...|+++
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 34444455555555555555555444455555555555555555555555555555544444444444555555555555
Q ss_pred HHHHHHHHHHH
Q 048394 336 ILKQCFEEWES 346 (485)
Q Consensus 336 ~a~~~~~~~~~ 346 (485)
+|...+++..+
T Consensus 103 ~A~~~~~~al~ 113 (121)
T 1hxi_A 103 AALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 182
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.55 E-value=8.1e-07 Score=67.43 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=8.8
Q ss_pred HHHHHHhcCcHHHHHHHHHHHH
Q 048394 359 IIRAYLQKDMYEEAALIFNNAK 380 (485)
Q Consensus 359 l~~~~~~~~~~~~A~~~~~~~~ 380 (485)
+..++...|++++|...|++..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~ 106 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSL 106 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHH
Confidence 3333334444444444443333
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.50 E-value=6.3e-06 Score=62.38 Aligned_cols=92 Identities=17% Similarity=0.153 Sum_probs=44.0
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCC---hhhHHHHHHHHH
Q 048394 256 LASIYVKAELFEKAELALKKLEEMKPRDR---KAYHFLISLYCNTSNLDAVNRVWGILKSTFPPT---NTSYLVLLQALA 329 (485)
Q Consensus 256 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~ 329 (485)
+...+...|++++|...|+.+.+..|.+. ..+..+..++...|++++|...++++....+.+ ...+..+..++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 33444445555555555555444333333 344444445555555555555555544444443 333444444455
Q ss_pred hcCChhHHHHHHHHHHHc
Q 048394 330 KLNAIDILKQCFEEWESR 347 (485)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~ 347 (485)
..|++++|...|+.+.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 555555555555544443
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.48 E-value=1.6e-06 Score=68.64 Aligned_cols=141 Identities=13% Similarity=-0.006 Sum_probs=89.1
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHccCC-CC----HHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCc---
Q 048394 318 NTSYLVLLQALAKLNAIDILKQCFEEWESRCSS-YD----MRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARF--- 389 (485)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~--- 389 (485)
..++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+.... .++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~ 87 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ-LKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hCCcHH
Confidence 345667777777778888888887777654322 11 135666777777777888888777777654210 111
Q ss_pred -hhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhhcCChhhHHHHHHHHhhcC
Q 048394 390 -FKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPM-QVTVDTFFRFFEEEKDVDGAEEFCKVLKSLN 459 (485)
Q Consensus 390 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 459 (485)
...+..+...+...|++++|...+++.++.....+..+. ...+..+...+...|++++|.+.+++..+..
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 234556666677777777777777777776533222111 3345566677777777777777777776643
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.48 E-value=2.9e-06 Score=67.07 Aligned_cols=134 Identities=14% Similarity=-0.016 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCC-C----H
Q 048394 285 KAYHFLISLYCNTSNLDAVNRVWGILKSTFPP------TNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSY-D----M 353 (485)
Q Consensus 285 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~ 353 (485)
.++..+...+...|++++|...+++.....+. ...++..+...+...|++++|.+.+++..+..... + .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34555666666666666666666655543222 11345556666666666666666666666543321 1 3
Q ss_pred HhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCc----hhHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 048394 354 RLADVIIRAYLQKDMYEEAALIFNNAKKRANASARF----FKSRESFMIYYLRSRQLDLALNEMEAALSE 419 (485)
Q Consensus 354 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 419 (485)
..+..+...+...|++++|...+++..+.... ..+ ...+..+...+...|++++|.+.+++..+.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE-LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-ccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34555556666666666666666665543210 111 123445555566666666666666666554
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.47 E-value=1.1e-06 Score=83.31 Aligned_cols=122 Identities=13% Similarity=0.024 Sum_probs=73.8
Q ss_pred HHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhc
Q 048394 184 NLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKA 263 (485)
Q Consensus 184 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 263 (485)
.+...+.+.|++++|++.|++..+.. +.+...+..+..+|.+.|++++|++.+++..+ ..+.+...+..+..+|...
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 33444556667777777776666642 22455666666666667777777777766666 4455566666666666667
Q ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHH--HHhcCChhhHHHHHH
Q 048394 264 ELFEKAELALKKLEEMKPRDRKAYHFLISL--YCNTSNLDAVNRVWG 308 (485)
Q Consensus 264 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 308 (485)
|++++|...++++.+..|.+...+..+..+ +.+.|++++|.+.++
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777777766666555555555555555 566666666666666
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.45 E-value=1.9e-05 Score=76.21 Aligned_cols=173 Identities=9% Similarity=-0.094 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC----------hhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcC--C
Q 048394 266 FEKAELALKKLEEMKPRDRKAYHFLISLYCNTSN----------LDAVNRVWGILKSTFPPTNTSYLVLLQALAKLN--A 333 (485)
Q Consensus 266 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~ 333 (485)
.++|++.++.+....|.+..+|+.-..++...|+ +++++..++.+....+.+..+|..-...+.+.+ +
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 4567778888877777777788777777766666 788888888888888888888887777777778 5
Q ss_pred hhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcC-cHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhc---------
Q 048394 334 IDILKQCFEEWESRCSSYDMRLADVIIRAYLQKD-MYEEAALIFNNAKKRANASARFFKSRESFMIYYLRS--------- 403 (485)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------- 403 (485)
++++.+.++++.+..+. +...|+.-..++.+.| .++++.+.++++++.+ .-|...|+.....+.+.
T Consensus 125 ~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~---p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 125 WARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT---CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred HHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC---CCCccHHHHHHHHHHhhccccccccc
Confidence 68888888888887766 7777877777777777 7888888888888765 44566676666555542
Q ss_pred -----ccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhh
Q 048394 404 -----RQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDG 447 (485)
Q Consensus 404 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 447 (485)
+.++++++++++++.. .+-+...|..+...+.+.+..++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~-----~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFT-----DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHH-----CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhh-----CCCCccHHHHHHHHHhcCCCccc
Confidence 6789999999999987 55678889888888888777554
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.41 E-value=1.7e-06 Score=64.41 Aligned_cols=90 Identities=13% Similarity=0.060 Sum_probs=48.1
Q ss_pred CCCcccHHHHHHHHHHcC--CCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHH
Q 048394 192 LGQPEKVRPLVNQMKQRN--ISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKA 269 (485)
Q Consensus 192 ~g~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 269 (485)
.|++++|+..|++..+.+ -+.+...+..+..+|...|++++|+..|++..+ ..+.+..++..+..++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK--QFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHcCCHHHH
Confidence 455666666666665542 122334455555566666666666666666655 3444455555566666666666666
Q ss_pred HHHHHHHHhcCCCC
Q 048394 270 ELALKKLEEMKPRD 283 (485)
Q Consensus 270 ~~~~~~~~~~~~~~ 283 (485)
...+++.....|.+
T Consensus 81 ~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 81 VELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhCCCc
Confidence 66666655544433
No 189
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.41 E-value=3.8e-06 Score=79.22 Aligned_cols=145 Identities=11% Similarity=-0.008 Sum_probs=88.2
Q ss_pred CCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCc-------------HHHHHHHHHH
Q 048394 193 GQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCR-------------WTTYSNLASI 259 (485)
Q Consensus 193 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~l~~~ 259 (485)
+++++|.+.|+...+.. +-....+..+...+.+.|++++|...|++..+.....+. ...|..+..+
T Consensus 248 ~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34455555444333211 113445666677777788888888888777761111111 4566667777
Q ss_pred HHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHH
Q 048394 260 YVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILK 338 (485)
Q Consensus 260 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 338 (485)
|.+.|++++|+..++++.+..|.+..+|..+..+|...|++++|...|+++.+..+.+...+..+..++.+.++.+++.
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777666667777777777777777777777777776666666666666666666666665554
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.38 E-value=5.8e-06 Score=65.65 Aligned_cols=102 Identities=13% Similarity=0.093 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhcc----------------CCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Q 048394 217 YIVWMQSYSHLNDIDGVERVFYEMCNEC----------------EDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMK 280 (485)
Q Consensus 217 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 280 (485)
+......+.+.|++++|+..|....... ..+.+...|..+..+|.+.|++++|+..++.+....
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 3444445555555555555555544410 022334556666667777777777777777776666
Q ss_pred CCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCCh
Q 048394 281 PRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTN 318 (485)
Q Consensus 281 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 318 (485)
|.+...|..+..+|...|++++|...|++.....|.+.
T Consensus 94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 66667777777777777777777777776666655544
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.38 E-value=4.5e-06 Score=76.13 Aligned_cols=117 Identities=10% Similarity=0.059 Sum_probs=53.9
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHh----------------cCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCC
Q 048394 254 SNLASIYVKAELFEKAELALKKLEE----------------MKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPT 317 (485)
Q Consensus 254 ~~l~~~~~~~~~~~~A~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 317 (485)
..+...+.+.|++++|...|+++.+ ..+.+..+|..+..+|.+.|++++|...++++.+..+.+
T Consensus 227 ~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~ 306 (370)
T 1ihg_A 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN 306 (370)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchh
Confidence 3344455555555555555555443 222233444444455555555555555555554444444
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHH
Q 048394 318 NTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEE 371 (485)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 371 (485)
...+..+..+|...|++++|.+.|++..+..+. +...+..+..++...++.++
T Consensus 307 ~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 307 TKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555555555544444322 33333334444443333333
No 192
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.37 E-value=6.1e-06 Score=57.92 Aligned_cols=84 Identities=15% Similarity=0.019 Sum_probs=74.2
Q ss_pred chhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHH
Q 048394 389 FFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSL 468 (485)
Q Consensus 389 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 468 (485)
+...+..+...+...|++++|+..+++.++. .+.+...+..+..++...|++++|...++++.+..|.++.++..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 82 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 82 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 3456777888899999999999999999987 44567888899999999999999999999999999999999999
Q ss_pred HHHHHHHhC
Q 048394 469 LIKTYIAAG 477 (485)
Q Consensus 469 l~~~~~~~g 477 (485)
++.++.+.|
T Consensus 83 l~~~~~~~g 91 (91)
T 1na3_A 83 LGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 999988765
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.35 E-value=3.9e-06 Score=64.90 Aligned_cols=93 Identities=12% Similarity=-0.081 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcC------C-CccHHHHHHHHHHHhhcCChhhHHHHHHHHhhc------
Q 048394 392 SRESFMIYYLRSRQLDLALNEMEAALSEAKQFH------W-RPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSL------ 458 (485)
Q Consensus 392 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------ 458 (485)
.+......+.+.|++++|+..|++.+...+..+ . +.+...|..+..++.+.|++++|...++++++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 345556677889999999999999998762100 0 001338899999999999999999999999999
Q ss_pred -CCCCHHHH----HHHHHHHHHhCCCcchhc
Q 048394 459 -NCLDFSAY----SLLIKTYIAAGKLASDMR 484 (485)
Q Consensus 459 -~~~~~~~~----~~l~~~~~~~g~~~~A~~ 484 (485)
.|.+..+| ...+.++...|++++|+.
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~ 123 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMP 123 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHH
Confidence 99999999 999999999999999974
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.30 E-value=2.7e-06 Score=76.77 Aligned_cols=131 Identities=13% Similarity=-0.009 Sum_probs=68.1
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHH
Q 048394 318 NTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFM 397 (485)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~ 397 (485)
...+..+...+.+.|++++|...|++..+.. |+... +...++.+++...+. ...|..+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~------------~~~~~nla 237 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK------------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH------------THHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH------------HHHHHHHH
Confidence 4455666666677777777777777776653 22221 112222222221110 02555666
Q ss_pred HHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 048394 398 IYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYI 474 (485)
Q Consensus 398 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 474 (485)
.+|.+.|++++|+..+++.+.. .+.+...|..+..+|...|++++|...|+++++..|.+..++..+..+..
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTE-----EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE 309 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 6677777777777777777765 33456667777777777777777777777777777777766666666533
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.28 E-value=3.2e-06 Score=76.23 Aligned_cols=94 Identities=11% Similarity=0.017 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHH-Hh
Q 048394 252 TYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQAL-AK 330 (485)
Q Consensus 252 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~ 330 (485)
.|..+..+|.+.|++++|+..+++..+..|.+..+|..+..+|...|++++|...|+++....+.+...+..+.... ..
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQE 311 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555545555555555555555555555555555444444333333333331 12
Q ss_pred cCChhHHHHHHHHHH
Q 048394 331 LNAIDILKQCFEEWE 345 (485)
Q Consensus 331 ~~~~~~a~~~~~~~~ 345 (485)
.+..+.+.+.|..+.
T Consensus 312 ~~~~~~a~~~~~~~l 326 (338)
T 2if4_A 312 KALYQKQKEMYKGIF 326 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHhh
Confidence 233334444444443
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.21 E-value=2.4e-05 Score=60.51 Aligned_cols=60 Identities=12% Similarity=0.001 Sum_probs=30.1
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCC-------ChH-----HHHHHHHHHHhcCChhhHHHHHHHhhhc
Q 048394 254 SNLASIYVKAELFEKAELALKKLEEMKPR-------DRK-----AYHFLISLYCNTSNLDAVNRVWGILKST 313 (485)
Q Consensus 254 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 313 (485)
......+.+.|++++|+..|++..+..|. +.. .|..+..++.+.|++++|+..+++..+.
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l 86 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 86 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34555555666666666666666664443 111 4444444444444444444444444433
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.13 E-value=1.4e-05 Score=59.13 Aligned_cols=78 Identities=14% Similarity=0.174 Sum_probs=44.4
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhh
Q 048394 233 VERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKS 312 (485)
Q Consensus 233 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 312 (485)
|+..|+...+ ..+.+...+..+..+|...|++++|...|++.....|.+...|..+..++...|++++|...|++...
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445555544 34445555555556666666666666666665555555555566666666666666666666555544
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.12 E-value=1.8e-05 Score=61.07 Aligned_cols=98 Identities=14% Similarity=-0.031 Sum_probs=70.5
Q ss_pred HhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhccc----------HHHHHHHHHHHHHHhhhcCCCccHHHHH
Q 048394 364 LQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQ----------LDLALNEMEAALSEAKQFHWRPMQVTVD 433 (485)
Q Consensus 364 ~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 433 (485)
.+.+.+++|...+++..+.+ +.+...|..+..++...++ +++|+..|++.++. .+.+...|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~---P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l-----dP~~~~A~~ 84 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN---PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-----DPKKDEAVW 84 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh-----CcCcHHHHH
Confidence 34456777777777777764 4456666666666666655 45888888888887 344667888
Q ss_pred HHHHHHhhcC-----------ChhhHHHHHHHHhhcCCCCHHHHHHH
Q 048394 434 TFFRFFEEEK-----------DVDGAEEFCKVLKSLNCLDFSAYSLL 469 (485)
Q Consensus 434 ~l~~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~l 469 (485)
.+..+|...| ++++|.+.|+++++.+|.+...+..+
T Consensus 85 ~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al 131 (158)
T 1zu2_A 85 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 8888887764 78899999999998888876555544
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.11 E-value=5.5e-06 Score=60.73 Aligned_cols=90 Identities=10% Similarity=-0.105 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCC------hHHH
Q 048394 214 NLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRD------RKAY 287 (485)
Q Consensus 214 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~ 287 (485)
...+..+...+...|++++|.+.|++..+ ..+.+...+..+..++...|++++|...+++.....|.+ ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLIT--AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 34444455555555555555555555555 334445555555555555566666665555555544444 4444
Q ss_pred HHHHHHHHhcCChhhHHH
Q 048394 288 HFLISLYCNTSNLDAVNR 305 (485)
Q Consensus 288 ~~l~~~~~~~~~~~~a~~ 305 (485)
..+..++...|+.+.|..
T Consensus 82 ~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHhHhhhHh
Confidence 444444444444444433
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.10 E-value=4.4e-05 Score=56.35 Aligned_cols=80 Identities=11% Similarity=0.080 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHH
Q 048394 336 ILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEA 415 (485)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 415 (485)
.|.+.|++..+..+. +...+..+...|...|++++|...|++..+.+ +.+...|..+...|...|++++|...|++
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD---PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 355555555554433 45555556666666666666666666665543 23344555555566666666666666666
Q ss_pred HHHH
Q 048394 416 ALSE 419 (485)
Q Consensus 416 ~~~~ 419 (485)
.+..
T Consensus 79 al~~ 82 (115)
T 2kat_A 79 GLAA 82 (115)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6554
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.03 E-value=5.7e-05 Score=52.77 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 048394 217 YIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISL 293 (485)
Q Consensus 217 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 293 (485)
+..+...+...|++++|...+++..+ ..+.+...+..+..++...|++++|...+++..+..|.+...+..+..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 33333444444444444444444443 2223333344444444444444444444444444333333344333333
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.93 E-value=9.3e-05 Score=52.97 Aligned_cols=86 Identities=15% Similarity=-0.032 Sum_probs=59.5
Q ss_pred chhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCC--CCHHHH
Q 048394 389 FFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNC--LDFSAY 466 (485)
Q Consensus 389 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~ 466 (485)
+...+..+...|...|++++|+..|+++++. .+.+...|..+..++...|++++|.+.++++++..| .+....
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~ 80 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET-----DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDL 80 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHH
Confidence 4455666777777777788888777777776 334566777777777777888888777777777654 356666
Q ss_pred HHHHHHHHHhCCC
Q 048394 467 SLLIKTYIAAGKL 479 (485)
Q Consensus 467 ~~l~~~~~~~g~~ 479 (485)
..+...+...+..
T Consensus 81 ~~l~~~l~~~~~~ 93 (100)
T 3ma5_A 81 SELQDAKLKAEGL 93 (100)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHcccc
Confidence 6666666665544
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.92 E-value=0.00012 Score=68.93 Aligned_cols=64 Identities=6% Similarity=-0.191 Sum_probs=29.9
Q ss_pred HhHHHHHHHHHhcCcHHHHHHHHHHHHhc-----ccccCCch-hHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 048394 354 RLADVIIRAYLQKDMYEEAALIFNNAKKR-----ANASARFF-KSRESFMIYYLRSRQLDLALNEMEAALS 418 (485)
Q Consensus 354 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 418 (485)
.+++.|...|...|++++|+.++++..+. |.. .|+. .+.+.+..++...+.+++|..+|.++.+
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~-Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS-HPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555544321 210 2222 2233444445555555555555555554
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.91 E-value=8e-05 Score=70.13 Aligned_cols=97 Identities=4% Similarity=-0.002 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhhc-----CCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHH-----ccCC-C
Q 048394 286 AYHFLISLYCNTSNLDAVNRVWGILKST-----FPP---TNTSYLVLLQALAKLNAIDILKQCFEEWES-----RCSS-Y 351 (485)
Q Consensus 286 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~-~ 351 (485)
+++.|..+|...|++++|..++++.... |+. ...+++.|...|...|++++|+.++++..+ .|.. |
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4455555555555555555555443321 222 334455556666666666666665555432 1221 1
Q ss_pred C-HHhHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 048394 352 D-MRLADVIIRAYLQKDMYEEAALIFNNAKKR 382 (485)
Q Consensus 352 ~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 382 (485)
+ ..+.+.+..++...+.+++|+.+|.++++.
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 233445556666667777777777777654
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.91 E-value=8e-05 Score=57.43 Aligned_cols=86 Identities=13% Similarity=0.115 Sum_probs=50.3
Q ss_pred hcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChh----------hHHHHHHHhhhcCCCChhhHHHHHHHHHhc
Q 048394 262 KAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLD----------AVNRVWGILKSTFPPTNTSYLVLLQALAKL 331 (485)
Q Consensus 262 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 331 (485)
+.+.+++|...++...+..|.+...|..+..++...++++ +|+..|++..+..|....+|..+..+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 3455666666666666666666666666666666655543 555555555555555555555555555544
Q ss_pred C-----------ChhHHHHHHHHHHHc
Q 048394 332 N-----------AIDILKQCFEEWESR 347 (485)
Q Consensus 332 ~-----------~~~~a~~~~~~~~~~ 347 (485)
| ++++|.+.|++..+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh
Confidence 3 455555555555544
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.90 E-value=5.9e-05 Score=54.01 Aligned_cols=66 Identities=20% Similarity=0.068 Sum_probs=43.7
Q ss_pred CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhh
Q 048394 247 KCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKS 312 (485)
Q Consensus 247 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 312 (485)
+.+...+..+..+|...|++++|...|+++.+..|.+..+|..+..+|...|++++|...+++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345556666666777777777777777776666666666677777777777777777766666543
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.83 E-value=0.00051 Score=52.48 Aligned_cols=112 Identities=9% Similarity=-0.152 Sum_probs=75.8
Q ss_pred CChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHh----cccHH
Q 048394 332 NAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLR----SRQLD 407 (485)
Q Consensus 332 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 407 (485)
++.++|.+.|++..+.|. |+.. |...|...+.+++|...|++..+.|. ...+..|...|.. .++++
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~-----~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELNS-----GNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHCSSSCCCHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCCC-----HHHHHHHHHHHHcCCCCCccHH
Confidence 456777777777777652 2332 66666666777778888877776542 3455566666666 67788
Q ss_pred HHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhh----cCChhhHHHHHHHHhhcCC
Q 048394 408 LALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEE----EKDVDGAEEFCKVLKSLNC 460 (485)
Q Consensus 408 ~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~ 460 (485)
+|+.+|++..+.+ +...+..|...|.. .+|+++|.++|++..+.+.
T Consensus 79 ~A~~~~~~Aa~~g-------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLN-------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC-------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 8888888877663 45556666666766 6788888888888777643
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.77 E-value=0.00094 Score=50.97 Aligned_cols=111 Identities=11% Similarity=-0.072 Sum_probs=60.7
Q ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHh----cCChhHHHH
Q 048394 264 ELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAK----LNAIDILKQ 339 (485)
Q Consensus 264 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~ 339 (485)
+++++|...|++..+...+... +...|...+.+++|...|++..+.+ +...+..+...|.. .++.++|.+
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACELN--SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 3555666666655553332222 4455555555555666666555432 34455555555555 556666666
Q ss_pred HHHHHHHccCCCCHHhHHHHHHHHHh----cCcHHHHHHHHHHHHhcc
Q 048394 340 CFEEWESRCSSYDMRLADVIIRAYLQ----KDMYEEAALIFNNAKKRA 383 (485)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 383 (485)
.|++..+.| ++..+..|...|.. .+++++|...|++..+.|
T Consensus 83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 666665543 44455555555655 566666666666666554
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.70 E-value=0.00048 Score=48.90 Aligned_cols=73 Identities=11% Similarity=-0.018 Sum_probs=46.8
Q ss_pred HHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHH-HHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHH--HHHHHHH
Q 048394 397 MIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQV-TVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAY--SLLIKTY 473 (485)
Q Consensus 397 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~ 473 (485)
...+.+.|++++|+..++++++. .+.+.. .+..+..++...|++++|...|+++.+..|.+..++ ..+..++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~ 81 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQT-----EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDIL 81 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH-----CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 34556677777777777777765 333455 666666677777777777777777777777666655 4444443
Q ss_pred H
Q 048394 474 I 474 (485)
Q Consensus 474 ~ 474 (485)
.
T Consensus 82 ~ 82 (99)
T 2kc7_A 82 N 82 (99)
T ss_dssp H
T ss_pred H
Confidence 3
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.66 E-value=0.0023 Score=56.87 Aligned_cols=64 Identities=11% Similarity=-0.079 Sum_probs=34.1
Q ss_pred CHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 048394 352 DMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSE 419 (485)
Q Consensus 352 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 419 (485)
++.+|..+...+...|++++|...++++... .|+...|..+...+.-.|++++|.+.|+++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~L----n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDL----EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4455555544444455555555555555554 344444444445555555555555555555554
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.63 E-value=0.0032 Score=55.93 Aligned_cols=150 Identities=8% Similarity=-0.055 Sum_probs=96.1
Q ss_pred cCCCChHHHHHHHHHHHh--cC---ChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCH
Q 048394 279 MKPRDRKAYHFLISLYCN--TS---NLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDM 353 (485)
Q Consensus 279 ~~~~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 353 (485)
..|.+..+|...+++... .+ ...+|..+|++..+..|.....+..+..++.- ....+.. +.
T Consensus 189 ~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~-------------~~~~~~~-~~ 254 (372)
T 3ly7_A 189 ILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIV-------------RHSQHPL-DE 254 (372)
T ss_dssp HSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------------HHHHSCC-CH
T ss_pred cCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------------HhccCCC-ch
Confidence 455667777766655432 22 23567777777777776666666555554430 0011100 11
Q ss_pred HhHHHHHHHHHhcCcHHHHHHHHHHHHhc-ccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHH
Q 048394 354 RLADVIIRAYLQKDMYEEAALIFNNAKKR-ANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTV 432 (485)
Q Consensus 354 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 432 (485)
. .......-++..... .. ..+..+|..+...+...|++++|...+++++..+ |+...|
T Consensus 255 ~-------------~~~~l~~a~~a~~a~~~~--~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln------~s~~a~ 313 (372)
T 3ly7_A 255 K-------------QLAALNTEIDNIVTLPEL--NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE------MSWLNY 313 (372)
T ss_dssp H-------------HHHHHHHHHHHHHTCGGG--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------CCHHHH
T ss_pred h-------------hHHHHHHHHHHHHhcccC--CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC------CCHHHH
Confidence 0 011111112222211 22 5566778777777777899999999999999974 788888
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHhhcCCCCH
Q 048394 433 DTFFRFFEEEKDVDGAEEFCKVLKSLNCLDF 463 (485)
Q Consensus 433 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 463 (485)
..+...+.-.|++++|.+.++++..+.|..+
T Consensus 314 ~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 314 VLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 8888899999999999999999999988654
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.51 E-value=0.00024 Score=50.48 Aligned_cols=59 Identities=15% Similarity=0.173 Sum_probs=27.9
Q ss_pred HHHHhcccHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHhcCChhhHHHHHHHhhhcCCC
Q 048394 258 SIYVKAELFEKAELALKKLEEMKPRDRK-AYHFLISLYCNTSNLDAVNRVWGILKSTFPP 316 (485)
Q Consensus 258 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 316 (485)
..+...|++++|...++++.+..|.+.. .+..+..++...|++++|...|++.....+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3344444445555444444444444444 4444444444444444444444444444444
No 213
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.37 E-value=0.0033 Score=45.04 Aligned_cols=81 Identities=16% Similarity=-0.065 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcC--CCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHH
Q 048394 390 FKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFH--WRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYS 467 (485)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 467 (485)
..-+..+...+.+.|++..|..+|+.+++...... -.+...++..+..++.+.|+++.|...++++.+..|.+..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 34455777888899999999999999887642211 2345678888889999999999999999999999998888766
Q ss_pred HHH
Q 048394 468 LLI 470 (485)
Q Consensus 468 ~l~ 470 (485)
.+.
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 654
No 214
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.34 E-value=0.0033 Score=43.87 Aligned_cols=70 Identities=13% Similarity=0.159 Sum_probs=40.5
Q ss_pred CCcHHHHHHHHHHHHhccc---HHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC
Q 048394 247 KCRWTTYSNLASIYVKAEL---FEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP 316 (485)
Q Consensus 247 ~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 316 (485)
+.+...+..+..++...++ .++|..++++..+..|.++.+...+...+...|++++|...|+++.+..+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3444555555555543333 456666666666666666666666666666666666666666666655554
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.33 E-value=0.0017 Score=60.07 Aligned_cols=103 Identities=10% Similarity=-0.069 Sum_probs=71.0
Q ss_pred hcCcHHHHHHHHHHHHhcc---c-ccCCc-hhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc--CCCcc-HHHHHHHH
Q 048394 365 QKDMYEEAALIFNNAKKRA---N-ASARF-FKSRESFMIYYLRSRQLDLALNEMEAALSEAKQF--HWRPM-QVTVDTFF 436 (485)
Q Consensus 365 ~~~~~~~A~~~~~~~~~~~---~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~-~~~~~~l~ 436 (485)
..|++++|..++++.++.. . +..|+ ..+++.|...|...|++++|+.++++++...... +..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578888888888776531 1 00122 3557888888888999999999988887653221 12233 45678888
Q ss_pred HHHhhcCChhhHHHHHHHHhh-----cCCCCHHHHH
Q 048394 437 RFFEEEKDVDGAEEFCKVLKS-----LNCLDFSAYS 467 (485)
Q Consensus 437 ~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~ 467 (485)
..|..+|++++|+.+++++++ .||..+.+-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 899999999999999888877 3566665543
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.32 E-value=0.005 Score=46.89 Aligned_cols=93 Identities=13% Similarity=0.007 Sum_probs=63.2
Q ss_pred cHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcc---cHHHHHHHHHHHHHHhhhcCCCc--cHHHHHHHHHHHhhc
Q 048394 368 MYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSR---QLDLALNEMEAALSEAKQFHWRP--MQVTVDTFFRFFEEE 442 (485)
Q Consensus 368 ~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 442 (485)
....+.+-|.+....+ .++..+...+..++++.+ +.++++.++++..+. ..| ....+..+.-++.+.
T Consensus 13 ~l~~~~~~y~~e~~~~---~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-----~~p~~~rd~lY~LAv~~~kl 84 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG---SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-----GSKEEQRDYVFYLAVGNYRL 84 (152)
T ss_dssp HHHHHHHHHHHHHHTT---CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-----SCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccC---CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CCccchHHHHHHHHHHHHHc
Confidence 3455566666655555 456666666667777766 666888888888776 223 345555566677888
Q ss_pred CChhhHHHHHHHHhhcCCCCHHHHHH
Q 048394 443 KDVDGAEEFCKVLKSLNCLDFSAYSL 468 (485)
Q Consensus 443 ~~~~~A~~~~~~~~~~~~~~~~~~~~ 468 (485)
|++++|.+.++.+++..|.+..+...
T Consensus 85 ~~Y~~A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 85 KEYEKALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88888888888888888877666554
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.31 E-value=0.0036 Score=57.99 Aligned_cols=114 Identities=12% Similarity=-0.022 Sum_probs=80.5
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhccc-ccCCc----hhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc--CCCcc-HHH
Q 048394 360 IRAYLQKDMYEEAALIFNNAKKRAN-ASARF----FKSRESFMIYYLRSRQLDLALNEMEAALSEAKQF--HWRPM-QVT 431 (485)
Q Consensus 360 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~-~~~ 431 (485)
+..+.+.|++++|+.++++..+... ...|+ ..+++.+...|...|++++|+.++++++...... +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 4445677899999999998876411 00222 3467888889999999999999999888653221 22333 456
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHhh-----cCCCCHHHH---HHHHHHH
Q 048394 432 VDTFFRFFEEEKDVDGAEEFCKVLKS-----LNCLDFSAY---SLLIKTY 473 (485)
Q Consensus 432 ~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~---~~l~~~~ 473 (485)
++.|...|..+|++++|+.+++++.+ .||..+.+- ..|..+.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~ 423 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD 423 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 78888999999999999999998877 366665553 4454444
No 218
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.08 E-value=0.019 Score=43.12 Aligned_cols=105 Identities=12% Similarity=0.177 Sum_probs=70.1
Q ss_pred cCCCChHHHHHHHHHHHhcCCh------hhHHHHHHHhhhcCCCC-h---hhHHHHHHH---HHhcCChhHHHHHHHHHH
Q 048394 279 MKPRDRKAYHFLISLYCNTSNL------DAVNRVWGILKSTFPPT-N---TSYLVLLQA---LAKLNAIDILKQCFEEWE 345 (485)
Q Consensus 279 ~~~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~-~---~~~~~l~~~---~~~~~~~~~a~~~~~~~~ 345 (485)
+.|.|..+|-..+...-+.|++ +...++|++....-|++ . ..|.-+.-- +...++.++|.++|+.+.
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4456677777777777767777 67777777777666652 1 111111111 123478899999999887
Q ss_pred HccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q 048394 346 SRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRAN 384 (485)
Q Consensus 346 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 384 (485)
+.+-.- ...|....+.-.++|++.+|.+++.+.+..+.
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 764443 77777777777888999999999998888764
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.02 E-value=0.0084 Score=55.42 Aligned_cols=89 Identities=9% Similarity=-0.040 Sum_probs=65.0
Q ss_pred hcCChhHHHHHHHHHHHc---cCCCC----HHhHHHHHHHHHhcCcHHHHHHHHHHHHhc-----ccccCCc-hhHHHHH
Q 048394 330 KLNAIDILKQCFEEWESR---CSSYD----MRLADVIIRAYLQKDMYEEAALIFNNAKKR-----ANASARF-FKSRESF 396 (485)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~p~-~~~~~~l 396 (485)
..|++++|+.++++..+. -..|+ ..+++.|..+|...|++++|+.++++.++. |.. .|+ ..+++.|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-Hp~~a~~l~nL 388 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY-SLNVASMWLKL 388 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-CHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-ChHHHHHHHHH
Confidence 346788888888876552 12222 467888889999999999999998887642 211 233 3457888
Q ss_pred HHHHHhcccHHHHHHHHHHHHHH
Q 048394 397 MIYYLRSRQLDLALNEMEAALSE 419 (485)
Q Consensus 397 ~~~~~~~g~~~~A~~~~~~~~~~ 419 (485)
...|...|++++|..+++++++.
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHH
Confidence 88899999999999999988765
No 220
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.01 E-value=0.062 Score=53.96 Aligned_cols=158 Identities=11% Similarity=0.018 Sum_probs=75.0
Q ss_pred HHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC--ChhhHHHHHHHHHhcCChh
Q 048394 258 SIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP--TNTSYLVLLQALAKLNAID 335 (485)
Q Consensus 258 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~ 335 (485)
..++-.|+.+....++..+.+....+..-...+.-++...|+.+.+..+.+.+.....+ .......+.-+|+..|+..
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH
T ss_pred hhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH
Confidence 33444556655555555554422212222222333334566767666666666553322 1122234445556666766
Q ss_pred HHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccH-HHHHHHHH
Q 048394 336 ILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQL-DLALNEME 414 (485)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~ 414 (485)
...+++..+.+.. ..++.....+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .++++.+.
T Consensus 578 aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~---d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 578 AVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH---NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS---CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 6666666665431 1123322333334444555555555555444332 33333333333344444443 56777777
Q ss_pred HHHHH
Q 048394 415 AALSE 419 (485)
Q Consensus 415 ~~~~~ 419 (485)
.+...
T Consensus 654 ~L~~D 658 (963)
T 4ady_A 654 PLTKD 658 (963)
T ss_dssp HHHTC
T ss_pred HHccC
Confidence 77543
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.99 E-value=0.0084 Score=55.51 Aligned_cols=25 Identities=8% Similarity=-0.008 Sum_probs=12.1
Q ss_pred HHHHHHHHHhCCCcccHHHHHHHHH
Q 048394 182 FNNLSTMYLRLGQPEKVRPLVNQMK 206 (485)
Q Consensus 182 ~~~l~~~~~~~g~~~~a~~~~~~~~ 206 (485)
++.|...|...|++++|+.++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4444444555555555554444443
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.072 Score=41.68 Aligned_cols=104 Identities=19% Similarity=0.225 Sum_probs=67.7
Q ss_pred HHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCccc
Q 048394 118 LDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEK 197 (485)
Q Consensus 118 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 197 (485)
.....+.|+++.|.++.+.+. +...|..|.....+.|+++-|.+.|.+... +..+.-.|.-.|+.++
T Consensus 12 F~LAL~lg~l~~A~e~a~~l~----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKLN----DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHHHhcCCHHHHHHHHHHhC----CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 444556777777777776652 567778888777778888888777776543 4455555666677666
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 048394 198 VRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEM 240 (485)
Q Consensus 198 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 240 (485)
..++-+.....| -++.....+...|+++++.++|.+.
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 665555555443 2344455566677777777777554
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.97 E-value=0.0065 Score=42.33 Aligned_cols=67 Identities=4% Similarity=-0.126 Sum_probs=33.8
Q ss_pred CCChHHHHHHHHHHHhcCC---hhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 048394 281 PRDRKAYHFLISLYCNTSN---LDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESR 347 (485)
Q Consensus 281 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 347 (485)
|.++..+..+..++...++ .++|..++++.....|.+..+...+...+.+.|++++|...|+.+.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3344455555555443332 355555555555555555555555555555555555555555555444
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.91 E-value=0.011 Score=50.29 Aligned_cols=92 Identities=11% Similarity=0.152 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHhc-----CChhhHHHHHHHhhhcCCC-ChhhHHHHHHHHHhc-CChhH
Q 048394 266 FEKAELALKKLEEMKPR--DRKAYHFLISLYCNT-----SNLDAVNRVWGILKSTFPP-TNTSYLVLLQALAKL-NAIDI 336 (485)
Q Consensus 266 ~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-~~~~~ 336 (485)
...|...+++..+.+|. +...|..+...|.+. |+.++|.+.|++..+.++. +..++......++.. |+.+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45566666666666664 455677777777663 7777777777777777765 466666677776663 77777
Q ss_pred HHHHHHHHHHccCC--CCHHhHH
Q 048394 337 LKQCFEEWESRCSS--YDMRLAD 357 (485)
Q Consensus 337 a~~~~~~~~~~~~~--~~~~~~~ 357 (485)
+.+.+++.....+. |+....+
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHH
Confidence 77777777766555 5543333
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.87 E-value=0.014 Score=41.67 Aligned_cols=76 Identities=16% Similarity=0.045 Sum_probs=46.5
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcc-----CCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHH
Q 048394 213 DNLTYIVWMQSYSHLNDIDGVERVFYEMCNEC-----EDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAY 287 (485)
Q Consensus 213 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 287 (485)
+...+..+...+.+.|++..|...|+...+.. ...+...++..+..+|.+.|+++.|...++++.+..|.+..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34445556666667777777777776655421 1234455666677777777777777777777766666555443
Q ss_pred H
Q 048394 288 H 288 (485)
Q Consensus 288 ~ 288 (485)
+
T Consensus 84 ~ 84 (104)
T 2v5f_A 84 G 84 (104)
T ss_dssp H
T ss_pred h
Confidence 3
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.78 E-value=0.17 Score=51.38 Aligned_cols=75 Identities=7% Similarity=-0.096 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Q 048394 218 IVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNT 297 (485)
Q Consensus 218 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 297 (485)
..++..+.+.|..+.|.++.+.... -.......|+++.|.++.+.+ .+...|..+.+.+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~~-------------~f~~~l~~~~~~~A~~~~~~~-----~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQDQ-------------KFELALKVGQLTLARDLLTDE-----SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHHH-------------HHHHHHHHTCHHHHHHHHTTC-----CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcch-------------heehhhhcCCHHHHHHHHHhh-----CcHhHHHHHHHHHHHc
Confidence 4455555566666666544421111 123344566666666665432 3456667777777777
Q ss_pred CChhhHHHHHHHh
Q 048394 298 SNLDAVNRVWGIL 310 (485)
Q Consensus 298 ~~~~~a~~~~~~~ 310 (485)
++++.|.+.|.++
T Consensus 695 ~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 695 FNFKLAIEAFTNA 707 (814)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHc
Confidence 7777666666654
No 227
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.72 E-value=4.2e-05 Score=69.24 Aligned_cols=245 Identities=14% Similarity=0.143 Sum_probs=157.0
Q ss_pred CchhHHHHHHhhcCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 048394 42 NEDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLT 121 (485)
Q Consensus 42 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (485)
..+.++.++.+...+.+.+.++++.+++. .|+..|..++....+.|.+++-+..+.-.++..-.| ..=+.|+-+|
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ay 126 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFAL 126 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHH
Confidence 34456777777777788888888888776 455668889999999999999998887766654333 3345788899
Q ss_pred HhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCC--------------------CCCChhh
Q 048394 122 AKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELK--------------------FLGNTVA 181 (485)
Q Consensus 122 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--------------------~~p~~~~ 181 (485)
++.+++.+-++++. .||..-...+..-|...|.++.|.-+|..+.... -.-++.|
T Consensus 127 Ak~~rL~elEefl~-----~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp HTSCSSSTTTSTTS-----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred HhhCcHHHHHHHHc-----CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 99888765443332 3455555566666666676666666665443210 1125668
Q ss_pred HHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Q 048394 182 FNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYV 261 (485)
Q Consensus 182 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 261 (485)
|-.+-.+|...+.+.-|.-.--.+.-. || ....++..|-..|.+++-+.+++.-.. ........|+.|.-.|+
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglg--lErAHmGmFTELaILYs 274 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYS 274 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTT--STTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhC--CCchhHHHHHHHHHHHH
Confidence 888888888888877766554444322 11 122356667778888888888877764 45567777777777776
Q ss_pred hcccHHHHHHHHHHHHh-cCC-------CChHHHHHHHHHHHhcCChhhHH
Q 048394 262 KAELFEKAELALKKLEE-MKP-------RDRKAYHFLISLYCNTSNLDAVN 304 (485)
Q Consensus 262 ~~~~~~~A~~~~~~~~~-~~~-------~~~~~~~~l~~~~~~~~~~~~a~ 304 (485)
+- ++++..+.++..-. +.- .....|..++-.|.+-.++|.|.
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 65 34444444333222 111 23455667777777766666554
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.72 E-value=0.026 Score=57.37 Aligned_cols=45 Identities=16% Similarity=0.171 Sum_probs=24.4
Q ss_pred HhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 048394 122 AKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKM 170 (485)
Q Consensus 122 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 170 (485)
...|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~~----~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDES----AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhhC----cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34555555555544442 4455555555555555555555555554
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.081 Score=41.38 Aligned_cols=131 Identities=7% Similarity=0.002 Sum_probs=96.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHH
Q 048394 83 VRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTER 162 (485)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 162 (485)
+....+.|+++.|.++.+.+ .+...|..+.....+.|+++-|++.|..... +..+.-.|.-.|+.+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------HHHHHHHHHHHTCHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------HHHHHHHHHHhCCHHH
Confidence 44567889999999998876 3678899999999999999999999999976 4555566677888887
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 048394 163 ALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMC 241 (485)
Q Consensus 163 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 241 (485)
-.++-+.....| -++.....+.-.|+++++.++|.+. |..|.... .....|..+.|.++.+++.
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~~------~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPLAYA------VAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHHH------HHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHHHHH------HHHHcCcHHHHHHHHHHhC
Confidence 776666655554 4577777788899999999988554 32222221 1223566777888877664
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.52 E-value=0.047 Score=46.51 Aligned_cols=107 Identities=13% Similarity=0.012 Sum_probs=83.4
Q ss_pred hhhHHHHHHHhhhcCCC--ChhhHHHHHHHHHhc-----CChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhc-CcHHH
Q 048394 300 LDAVNRVWGILKSTFPP--TNTSYLVLLQALAKL-----NAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQK-DMYEE 371 (485)
Q Consensus 300 ~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 371 (485)
...|...+++..+..+. +...|..+...|.+. |+.++|.+.|++..+.++.-+..++....+.++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 35788888999998888 788999999999985 99999999999999987653577777788888884 99999
Q ss_pred HHHHHHHHHhcccccC--CchhHHHHHHHHHHhcccHHHHHHHHHHH
Q 048394 372 AALIFNNAKKRANASA--RFFKSRESFMIYYLRSRQLDLALNEMEAA 416 (485)
Q Consensus 372 A~~~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (485)
+.+.+++.+.... . |+....+.+ .-.+|..++.++
T Consensus 259 a~~~L~kAL~a~p--~~~P~~~lan~~--------~q~eA~~LL~~~ 295 (301)
T 3u64_A 259 FDEALDRALAIDP--ESVPHNKLLVIL--------SQKRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHHHCCG--GGCSSCHHHHHH--------HHHHHHHHHHTH
T ss_pred HHHHHHHHHcCCC--CCCCChhHHHHH--------HHHHHHHHHHHh
Confidence 9999999998865 4 665444333 335555555544
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.43 E-value=0.17 Score=37.19 Aligned_cols=58 Identities=17% Similarity=0.077 Sum_probs=25.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q 048394 325 LQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRA 383 (485)
Q Consensus 325 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 383 (485)
++.+...|+-|+-.+++..+.. +..|++...-.+..+|.+.|+..+|.+++.++-+.|
T Consensus 98 Ld~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 98 LDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3344444444444444444322 123344444444444445555555555544444444
No 232
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.40 E-value=0.036 Score=42.19 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=8.7
Q ss_pred HHHhcccHHHHHHHHHHHHHH
Q 048394 399 YYLRSRQLDLALNEMEAALSE 419 (485)
Q Consensus 399 ~~~~~g~~~~A~~~~~~~~~~ 419 (485)
+|.+.|++++|.++++.+++.
T Consensus 80 ~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 80 GNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhc
Confidence 334444444444444444443
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.40 E-value=0.06 Score=39.36 Aligned_cols=94 Identities=14% Similarity=0.018 Sum_probs=59.7
Q ss_pred CcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHH---HHHHHHHHHHHhhhcCCCc--cHHHHHHHHHHHhh
Q 048394 367 DMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDL---ALNEMEAALSEAKQFHWRP--MQVTVDTFFRFFEE 441 (485)
Q Consensus 367 ~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 441 (485)
.....+.+-|.+....| .|+..+--.+..++++..+... ++.+++.....+ .| .....-.+.-++.+
T Consensus 15 ~~l~~~~~~y~~e~~~~---~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-----~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG---SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-----SKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC---CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-----CcchHHHHHHHHHHHHHH
Confidence 34455555665555544 4555555556666766665444 777777776652 23 23344445567888
Q ss_pred cCChhhHHHHHHHHhhcCCCCHHHHHH
Q 048394 442 EKDVDGAEEFCKVLKSLNCLDFSAYSL 468 (485)
Q Consensus 442 ~~~~~~A~~~~~~~~~~~~~~~~~~~~ 468 (485)
.|+++.|.+.++.+++..|.|..+...
T Consensus 87 lg~Y~~A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 888888888888888888877665543
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.26 E-value=0.045 Score=53.90 Aligned_cols=48 Identities=15% Similarity=0.141 Sum_probs=38.4
Q ss_pred HHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcchh
Q 048394 436 FRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDM 483 (485)
Q Consensus 436 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 483 (485)
..-|...|+++-|.++.+++....|.+-.+|..|+.+|...|+|+.|+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~AL 391 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKAL 391 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHH
Confidence 345667788888888888888888888888888888888888888875
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.26 E-value=0.095 Score=39.37 Aligned_cols=115 Identities=10% Similarity=0.035 Sum_probs=77.8
Q ss_pred CHHhHHHHHHHHHhcCcH------HHHHHHHHHHHhcccccCCch-hHHHHHHH------HHHhcccHHHHHHHHHHHHH
Q 048394 352 DMRLADVIIRAYLQKDMY------EEAALIFNNAKKRANASARFF-KSRESFMI------YYLRSRQLDLALNEMEAALS 418 (485)
Q Consensus 352 ~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~~p~~-~~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 418 (485)
|..+|-..+....+.|+. ++.+++|++.... + +|+. ..|...+. .+...++.++|.++|+.+++
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~--Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-L--PPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-S--CGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-C--CccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 455555555555555555 6666777766654 2 3332 11211111 12345899999999999988
Q ss_pred HhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 048394 419 EAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYI 474 (485)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 474 (485)
..+. + ..+|.....--.++|+...|.+++.+.+.++|.+.......+.-+.
T Consensus 89 ~hKk--F---AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~ 139 (161)
T 4h7y_A 89 NCKK--F---AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLN 139 (161)
T ss_dssp HCTT--B---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHH
T ss_pred HhHH--H---HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhh
Confidence 6321 3 7888888888899999999999999999999988887777665543
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.74 E-value=0.11 Score=51.18 Aligned_cols=125 Identities=6% Similarity=-0.016 Sum_probs=80.6
Q ss_pred HHHHHHhCCC-cccHHHHHHHHHHcCCCccHHHH--HHHHHHHHhcC-CHhHHHHHHHHHHhc-----cCCCC-c-----
Q 048394 185 LSTMYLRLGQ-PEKVRPLVNQMKQRNISLDNLTY--IVWMQSYSHLN-DIDGVERVFYEMCNE-----CEDKC-R----- 249 (485)
Q Consensus 185 l~~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~~-~~~~a~~~~~~~~~~-----~~~~~-~----- 249 (485)
++..+...++ .+.|..+|+++.... |...++ ..++....+.+ +--+|.+++.+..+. ...++ +
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 4444444555 477899999988763 433332 22333333332 222345555444320 01111 1
Q ss_pred -----HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhh
Q 048394 250 -----WTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILK 311 (485)
Q Consensus 250 -----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 311 (485)
......-+..+...|+++.|+.+.++.....|.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 12334445667778999999999999999888899999999999999999999999888773
No 237
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.52 E-value=1.5 Score=40.58 Aligned_cols=247 Identities=9% Similarity=0.075 Sum_probs=138.9
Q ss_pred cCCHhHHHHHHHHHHhc----cCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH----hcC
Q 048394 227 LNDIDGVERVFYEMCNE----CEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYC----NTS 298 (485)
Q Consensus 227 ~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~ 298 (485)
.|+++.|++.+-.+.+. ....-.......++..|...++++...+.+..+.+...........+++.+. ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 37788888877666642 2344456777788889999999998888777666533333344444444333 233
Q ss_pred Chhh--HHHHHHHhhhc--CCCCh-----hhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCC-----HHhHHHHHHHHH
Q 048394 299 NLDA--VNRVWGILKST--FPPTN-----TSYLVLLQALAKLNAIDILKQCFEEWESRCSSYD-----MRLADVIIRAYL 364 (485)
Q Consensus 299 ~~~~--a~~~~~~~~~~--~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~ 364 (485)
..+. -..+.+..... +..-. .....|...+...|++.+|.+++..+...-...+ ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 3222 11222211111 11111 1234577778888899999888888754322222 345666777888
Q ss_pred hcCcHHHHHHHHHHHHhcccccCCch----hHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHH----HHH
Q 048394 365 QKDMYEEAALIFNNAKKRANASARFF----KSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVD----TFF 436 (485)
Q Consensus 365 ~~~~~~~A~~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----~l~ 436 (485)
..+++..|..++.++...-....++. ..+...+..+...+++.+|...|.++..... ...|...+. .++
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~---~~~d~~~~~~~L~~~v 265 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDA---IKSDEAKWKPVLSHIV 265 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH---HHSCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccc---ccCCHHHHHHHHHHHH
Confidence 88888888888888754311102222 2345556667778888888888888877631 112222222 222
Q ss_pred HHHhhcCChhhHHHHHHHHhhcCCC-CHHHHHHHHHHHHHh
Q 048394 437 RFFEEEKDVDGAEEFCKVLKSLNCL-DFSAYSLLIKTYIAA 476 (485)
Q Consensus 437 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 476 (485)
.+..-.+....-..+.......... +...+..+..+|...
T Consensus 266 ~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~ 306 (445)
T 4b4t_P 266 YFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTN 306 (445)
T ss_dssp HHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhc
Confidence 3333333334444444433332222 345677777777653
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.31 E-value=0.32 Score=35.51 Aligned_cols=84 Identities=10% Similarity=-0.088 Sum_probs=44.5
Q ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhh---HHHHHHHhhhcCCC--ChhhHHHHHHHHHhcCChhHHH
Q 048394 264 ELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDA---VNRVWGILKSTFPP--TNTSYLVLLQALAKLNAIDILK 338 (485)
Q Consensus 264 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~ 338 (485)
.....+.+.+......++++..+-..+..++.++.+... ++.+++.+...+.+ .....-.+.-++.+.|+++.|.
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 334444444444444344555666666666666555544 55566655554422 3333444555566666666666
Q ss_pred HHHHHHHHc
Q 048394 339 QCFEEWESR 347 (485)
Q Consensus 339 ~~~~~~~~~ 347 (485)
+.++.+.+.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666554
No 239
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.98 E-value=2 Score=38.80 Aligned_cols=166 Identities=9% Similarity=0.027 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcH---HHHHHHHHHHHhc-ccHHHHHHHHHHHHhcCCCChHHH---
Q 048394 215 LTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRW---TTYSNLASIYVKA-ELFEKAELALKKLEEMKPRDRKAY--- 287 (485)
Q Consensus 215 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~--- 287 (485)
.....|...|.+.|+.++..+++.....--...+-. .....+++.+... +..+.-.++.....+....+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667888888888888888888776522222222 2334555655543 333444444444443111122233
Q ss_pred ---HHHHHHHHhcCChhhHHHHHHHhhhcCCC------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHc--cCCCCHHhH
Q 048394 288 ---HFLISLYCNTSNLDAVNRVWGILKSTFPP------TNTSYLVLLQALAKLNAIDILKQCFEEWESR--CSSYDMRLA 356 (485)
Q Consensus 288 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~ 356 (485)
..++..|...|++.+|..++..+.+.-.. -...+..-+..|...+++..+...+...... .+.+++.+-
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 15677777777777777777766654322 2234455566666777777777777766432 222333333
Q ss_pred HHH----HHHHH-hcCcHHHHHHHHHHHH
Q 048394 357 DVI----IRAYL-QKDMYEEAALIFNNAK 380 (485)
Q Consensus 357 ~~l----~~~~~-~~~~~~~A~~~~~~~~ 380 (485)
..+ ...+. ..+++..|...|-+..
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 221 11234 5677777777766554
No 240
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.84 E-value=3.1 Score=40.28 Aligned_cols=115 Identities=10% Similarity=-0.050 Sum_probs=63.1
Q ss_pred ChhhHHHHHHHhhhcCCCChhhHH----HHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHH
Q 048394 299 NLDAVNRVWGILKSTFPPTNTSYL----VLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAAL 374 (485)
Q Consensus 299 ~~~~a~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 374 (485)
+.+.|...+.........+..... .++..+...+...++...+....... .+.....-.+..-.+.|+++.|..
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHH
Confidence 677888888777654333222222 22222333442445555555544332 233333334444456688888888
Q ss_pred HHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 048394 375 IFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALS 418 (485)
Q Consensus 375 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 418 (485)
.|..|..... . ...-.--+..++...|+.++|..+|+.+..
T Consensus 307 ~~~~l~~~~~--~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 307 WLARLPMEAK--E-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHSCTTGG--G-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHcccccc--c-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8877765321 1 122223455667778888888888888753
No 241
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.74 E-value=9.1e-05 Score=67.13 Aligned_cols=201 Identities=13% Similarity=0.181 Sum_probs=115.5
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcC
Q 048394 253 YSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLN 332 (485)
Q Consensus 253 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 332 (485)
|..|..++...+.+.+|++.| +...|+..|..++.+..+.|.+++-...+...++. ..++..=+.|+-+|++.+
T Consensus 57 Ws~LgkAqL~~~~v~eAIdsy-----IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 57 WSQLAKAQLQKGMVKEAIDSY-----IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFALAKTN 130 (624)
T ss_dssp SSSHHHHTTTSSSCTTTTTSS-----CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHHHHTSC
T ss_pred HHHHHHHHHccCchHHHHHHH-----HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHHHHhhC
Confidence 334555555555555554443 33345555666666666666666665555544433 224444455666666666
Q ss_pred ChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhccc------------------ccCCchhHHH
Q 048394 333 AIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRAN------------------ASARFFKSRE 394 (485)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------------------~~~p~~~~~~ 394 (485)
+..+.++++. .||..-...+.+-|...|.++.|.-+|..+....- ....+..||.
T Consensus 131 rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWK 203 (624)
T 3lvg_A 131 RLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWK 203 (624)
T ss_dssp SSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHH
T ss_pred cHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHH
Confidence 6554333322 23444444455555555555555554443311000 0034557788
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 048394 395 SFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYI 474 (485)
Q Consensus 395 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 474 (485)
.+-.+|...+.+.-|.-+--.++- ..+....++..|...|-+++-+.+++....+.......|+.|+-.|.
T Consensus 204 eV~~ACvd~~EfrLAqicGLniIv---------hadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYs 274 (624)
T 3lvg_A 204 EVCFACVDGKEFRLAQMCGLHIVV---------HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 274 (624)
T ss_dssp HHTHHHHHSCTTTTTTHHHHHHHC---------CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhCchHHHHHHHhcchhcc---------cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 888888888887776554444332 22233456777888888888888888888777778888888888887
Q ss_pred H
Q 048394 475 A 475 (485)
Q Consensus 475 ~ 475 (485)
+
T Consensus 275 K 275 (624)
T 3lvg_A 275 K 275 (624)
T ss_dssp S
T ss_pred h
Confidence 6
No 242
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.52 E-value=0.64 Score=35.71 Aligned_cols=111 Identities=12% Similarity=0.015 Sum_probs=61.9
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcc-cccCCch-------hHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc--------
Q 048394 360 IRAYLQKDMYEEAALIFNNAKKRA-NASARFF-------KSRESFMIYYLRSRQLDLALNEMEAALSEAKQF-------- 423 (485)
Q Consensus 360 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------- 423 (485)
++.+...|.++.|+-+.+.+.... . .|+. .++..+.+++...|++.+|...|++.++..+.-
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~--~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNN--NPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH--STTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcC--CcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 444555666666666655544321 1 2221 134455566666666766666666655443210
Q ss_pred ------------CCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 048394 424 ------------HWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTY 473 (485)
Q Consensus 424 ------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 473 (485)
....+.+.-..+..+|.+.+++++|+.+++.+... ...+.+-..|++.|
T Consensus 105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 105 STGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANLY 165 (167)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHHC
T ss_pred cccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHHh
Confidence 01222344444668889999999999887765332 23566666666654
No 243
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.20 E-value=1.2 Score=32.83 Aligned_cols=137 Identities=7% Similarity=0.081 Sum_probs=66.6
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHH
Q 048394 86 LRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALA 165 (485)
Q Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 165 (485)
+.-.|..++..++..+..+.. +..-||.+|.-....-+-+...++++.+.+. -| ...+|+......
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-FD----------is~C~NlKrVi~ 82 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FD----------LDKCQNLKSVVE 82 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SC----------GGGCSCTHHHHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh-cC----------cHhhhcHHHHHH
Confidence 445677777777777765543 4455555555555555555555555555440 01 012233333333
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 048394 166 LFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCN 242 (485)
Q Consensus 166 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (485)
.+-.+- .+.......+......|.-|+..+++..+... .+|++.....+..+|.+.|+..+|.+++.+.-+
T Consensus 83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 332221 12233444444555555555555555553322 244444555555555555555555555555544
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.06 E-value=5.8 Score=40.22 Aligned_cols=91 Identities=8% Similarity=0.020 Sum_probs=41.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHH--HHHHHHHh
Q 048394 325 LQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRE--SFMIYYLR 402 (485)
Q Consensus 325 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~--~l~~~~~~ 402 (485)
...+...|+.+....++..+.+.. .-+..-...+.-++...|+.+.+..+++.+.... .|....-. .+.-+|+.
T Consensus 497 Gli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~---dp~vRygaa~alglAyaG 572 (963)
T 4ady_A 497 GLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASD---ESLLRYGGAFTIALAYAG 572 (963)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred hhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHhcC
Confidence 333445566555566666555431 1111222222233345566666666666655431 22221111 22334555
Q ss_pred cccHHHHHHHHHHHHHH
Q 048394 403 SRQLDLALNEMEAALSE 419 (485)
Q Consensus 403 ~g~~~~A~~~~~~~~~~ 419 (485)
.|+.....+++..+.+.
T Consensus 573 TGn~~aIq~LL~~~~~d 589 (963)
T 4ady_A 573 TGNNSAVKRLLHVAVSD 589 (963)
T ss_dssp SCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhccC
Confidence 66655555566665543
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.81 E-value=4.3 Score=42.85 Aligned_cols=143 Identities=8% Similarity=-0.014 Sum_probs=77.5
Q ss_pred HHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC-----------------
Q 048394 116 VYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGN----------------- 178 (485)
Q Consensus 116 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~----------------- 178 (485)
.++..+.+.+..+.+.++...... +...--.+..++...|++++|.+.|++... |+..+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~---~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS---DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC---CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC---CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccc
Confidence 345556667777777666555443 444434456677778888888888876521 11110
Q ss_pred ------hhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCC--cc--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCC
Q 048394 179 ------TVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNIS--LD--NLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKC 248 (485)
Q Consensus 179 ------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 248 (485)
..-|..++..+-+.+.++.+.++-....+.... ++ ...|..+.+.+...|++++|...+-.+.. ...
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd---~~~ 969 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST---TPL 969 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH---SSS
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC---HHH
Confidence 112455556666666666666665555443211 11 11355566666666777666666655544 122
Q ss_pred cHHHHHHHHHHHHhccc
Q 048394 249 RWTTYSNLASIYVKAEL 265 (485)
Q Consensus 249 ~~~~~~~l~~~~~~~~~ 265 (485)
-...+..++...|..|.
T Consensus 970 r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp CHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 33444445555555444
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.81 E-value=4.1 Score=37.68 Aligned_cols=255 Identities=6% Similarity=0.005 Sum_probs=154.2
Q ss_pred CCCcccHHHHHHHHHHc-----CCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh----
Q 048394 192 LGQPEKVRPLVNQMKQR-----NISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVK---- 262 (485)
Q Consensus 192 ~g~~~~a~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 262 (485)
.|+++.|++.+-.+.+. +..........++..|...|+++...+.+..+.+..+..+.. ...++..+..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhc
Confidence 36788898888777643 234456778889999999999999999888887744444333 3345544432
Q ss_pred cccHH--HHHHHHHHHHhcCC--C-----ChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC------ChhhHHHHHHH
Q 048394 263 AELFE--KAELALKKLEEMKP--R-----DRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP------TNTSYLVLLQA 327 (485)
Q Consensus 263 ~~~~~--~A~~~~~~~~~~~~--~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~ 327 (485)
....+ .-..+.+.+..... - .......|...+...|++.+|..++..+...... -...+...+..
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 22222 22222222222111 1 1233467889999999999999999998754322 23567778888
Q ss_pred HHhcCChhHHHHHHHHHHHc----cCCCC--HHhHHHHHHHHHhcCcHHHHHHHHHHHHhc-ccccCCchhHHHHHHH--
Q 048394 328 LAKLNAIDILKQCFEEWESR----CSSYD--MRLADVIIRAYLQKDMYEEAALIFNNAKKR-ANASARFFKSRESFMI-- 398 (485)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~p~~~~~~~l~~-- 398 (485)
|...+++..|..++..+... ...|+ ...+...+..+...+++.+|.+.|.++.+. .. ..+...+...+.
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~--~~d~~~~~~~L~~~ 264 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI--KSDEAKWKPVLSHI 264 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc--cCCHHHHHHHHHHH
Confidence 99999999999999987532 12222 235667778888899999999998887654 22 223332322211
Q ss_pred --HHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhc--CChhhHHHHHHH
Q 048394 399 --YYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEE--KDVDGAEEFCKV 454 (485)
Q Consensus 399 --~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~ 454 (485)
...-.+....--.++....... .-++...+..++.+|... .+++...+.|+.
T Consensus 265 v~~~iLa~~~~~~~~ll~~~~~~~----~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~ 320 (445)
T 4b4t_P 265 VYFLVLSPYGNLQNDLIHKIQNDN----NLKKLESQESLVKLFTTNELMRWPIVQKTYEP 320 (445)
T ss_dssp HHHHHHSSCSSTTHHHHHSHHHHS----SCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCS
T ss_pred HHHHHhCCCCchHHHHHHHHhhcc----cccccHHHHHHHHHHHhchHhhhHHHHHHHHH
Confidence 1122222222333444443332 335667777777777543 344554444443
No 247
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.69 E-value=1.5 Score=32.21 Aligned_cols=77 Identities=10% Similarity=-0.021 Sum_probs=53.5
Q ss_pred CCchhHHHHHHHHHHhcc---cHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCH
Q 048394 387 ARFFKSRESFMIYYLRSR---QLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDF 463 (485)
Q Consensus 387 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 463 (485)
.|+..+--.+..++++.. +..+++.+++++...+ ..-....+-.+.-++.+.|+++.|.++.+.+++..|.|.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~----~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA----ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 566665555556666544 4557888888888764 111344555566788889999999999999999888886
Q ss_pred HHHH
Q 048394 464 SAYS 467 (485)
Q Consensus 464 ~~~~ 467 (485)
.+-.
T Consensus 113 QA~~ 116 (134)
T 3o48_A 113 QVGA 116 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 248
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.23 E-value=0.73 Score=31.76 Aligned_cols=63 Identities=16% Similarity=0.117 Sum_probs=48.3
Q ss_pred cHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHH
Q 048394 405 QLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIK 471 (485)
Q Consensus 405 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 471 (485)
+.-+..+-++.+.... ..|++.+..+.+++|.+.+|+..|.++++-+.........+|..+++
T Consensus 25 D~~e~rrglN~l~~~D----lVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYD----LVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSS----BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccc----cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 4445566666666655 88999999999999999999999999999988766554555655554
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.21 E-value=1.6 Score=39.68 Aligned_cols=55 Identities=11% Similarity=-0.034 Sum_probs=26.5
Q ss_pred HHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 048394 290 LISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEW 344 (485)
Q Consensus 290 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 344 (485)
++..+...|+++++...+..+....|-+...+..++.++.+.|+..+|++.|+..
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444455555554444444444444444555555555555555555444443
No 250
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.08 E-value=0.99 Score=33.63 Aligned_cols=88 Identities=13% Similarity=-0.002 Sum_probs=61.4
Q ss_pred CCcHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHcCChH---HHHHHHHHHHhCCCCCChhhHH-HHHHHHHhhCCHHHHH
Q 048394 57 GGSVTGALNAYIME-GKTVRKDMLEYCVRSLRKFGRYR---HALEVIEWMESRKMHFSYTDFA-VYLDLTAKTNGIAAAE 131 (485)
Q Consensus 57 ~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~ 131 (485)
+..+..+-+.+.++ +..|+..+-.....++.+..+.+ +++.+++.+.+.+. .+...+. .+.-++.+.|+++.|+
T Consensus 19 ~eeL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~-~~~RdcLYyLAvg~ykl~~Y~~Ar 97 (144)
T 1y8m_A 19 PQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE-SRRRECLYYLTIGCYKLGEYSMAK 97 (144)
T ss_dssp HHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCC-STHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc-cchhHHHHHHHHHHHHhhhHHHHH
Confidence 34444455566555 55788899999999999887655 57888888877542 2333333 3445778899999999
Q ss_pred HHHHhhcccCCCHh
Q 048394 132 KYFNGLSEYAKNRY 145 (485)
Q Consensus 132 ~~~~~~~~~~~~~~ 145 (485)
++.+.+.+..|+..
T Consensus 98 ~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 98 RYVDTLFEHERNNK 111 (144)
T ss_dssp HHHHHHHHTCCCCH
T ss_pred HHHHHHHhcCCCcH
Confidence 99998888666543
No 251
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.02 E-value=4.3 Score=35.50 Aligned_cols=84 Identities=10% Similarity=0.038 Sum_probs=47.5
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHH
Q 048394 246 DKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLL 325 (485)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 325 (485)
..-++.....+...|.+.+++.+|+..|-. ...+++..+..++..+...+...++--++. -.+
T Consensus 132 ~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il---g~~~s~~~~a~mL~ew~~~~~~~e~dlfia--------------RaV 194 (336)
T 3lpz_A 132 PAGDPELHHVVGTLYVEEGEFEAAEKHLVL---GTKESPEVLARMEYEWYKQDESHTAPLYCA--------------RAV 194 (336)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHTT---SCTTHHHHHHHHHHHHHHTSCGGGHHHHHH--------------HHH
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHh---cCCchHHHHHHHHHHHHHhcCCccHHHHHH--------------HHH
Confidence 344566667788888888888888877621 222233566555544444433322222221 223
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 048394 326 QALAKLNAIDILKQCFEEWES 346 (485)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~ 346 (485)
--|...+++..|..+++...+
T Consensus 195 L~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 195 LPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 345566788888777665543
No 252
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.94 E-value=4.4 Score=35.43 Aligned_cols=138 Identities=8% Similarity=-0.006 Sum_probs=86.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHH----HHHHHhcccccCCchhHHHH
Q 048394 320 SYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALI----FNNAKKRANASARFFKSRES 395 (485)
Q Consensus 320 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~~~~~~~~~~p~~~~~~~ 395 (485)
.|.++..-|.+.+++++|.+++..-.. .+.+.|+...|.++ ++-..+.++ .++......
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~--~~~~~~~~r 99 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQ--RVDGASRGK 99 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCC--CCCHHHHHH
Confidence 344567778888999988887654322 24455666555544 355556677 888888888
Q ss_pred HHHHHHhcccHH-HHHHHHHHHHHHhhhcC--CCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCC-HHHHHHHHH
Q 048394 396 FMIYYLRSRQLD-LALNEMEAALSEAKQFH--WRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLD-FSAYSLLIK 471 (485)
Q Consensus 396 l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~ 471 (485)
++..+.....-+ .=..+++++++-....+ ..-|+.....+...|.+.+++.+|+..|= .+..+ +..+..++.
T Consensus 100 L~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ 175 (336)
T 3lpz_A 100 LLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEY 175 (336)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHH
Confidence 888887777422 22445555554332211 23467777788889999999999988872 23333 356655555
Q ss_pred HHHHhCC
Q 048394 472 TYIAAGK 478 (485)
Q Consensus 472 ~~~~~g~ 478 (485)
-+...+.
T Consensus 176 ew~~~~~ 182 (336)
T 3lpz_A 176 EWYKQDE 182 (336)
T ss_dssp HHHHTSC
T ss_pred HHHHhcC
Confidence 5544443
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.78 E-value=0.82 Score=33.57 Aligned_cols=87 Identities=14% Similarity=0.008 Sum_probs=60.5
Q ss_pred cHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHH
Q 048394 59 SVTGALNAYIME-GKTVRKDMLEYCVRSLRKFGRY---RHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYF 134 (485)
Q Consensus 59 ~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 134 (485)
....+-+.+.++ +-.|+..+-.....++.+..+. ..++.+++.+.+.+..-....+-.+.-++.+.|+++.|.++.
T Consensus 22 eL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~ 101 (134)
T 3o48_A 22 QLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYV 101 (134)
T ss_dssp HHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 334444555555 6668888888899899888765 457888888877652112233334455788999999999999
Q ss_pred HhhcccCCCHh
Q 048394 135 NGLSEYAKNRY 145 (485)
Q Consensus 135 ~~~~~~~~~~~ 145 (485)
+.+.+..|+..
T Consensus 102 d~lL~~eP~N~ 112 (134)
T 3o48_A 102 DTLFEHERNNK 112 (134)
T ss_dssp HHHHTTCTTCH
T ss_pred HHHHhhCCCCH
Confidence 99988666543
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.64 E-value=11 Score=39.94 Aligned_cols=142 Identities=8% Similarity=-0.065 Sum_probs=82.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-C-----------------
Q 048394 220 WMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMK-P----------------- 281 (485)
Q Consensus 220 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~----------------- 281 (485)
++..+...+..+.+.++..-.. .+...--.++.+|...|++++|.+.|.+..... .
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 4455556666666555443222 223333456777888888888888887754311 0
Q ss_pred -----CChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC-Ch----hhHHHHHHHHHhcCChhHHHHHHHHHHHccCCC
Q 048394 282 -----RDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP-TN----TSYLVLLQALAKLNAIDILKQCFEEWESRCSSY 351 (485)
Q Consensus 282 -----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 351 (485)
.-..-|..++..+.+.+.++.+.++-....+...+ +. ..|..+.+.+...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 01233566677777777777777776665554333 22 2466677777777888887777766654432
Q ss_pred CHHhHHHHHHHHHhcCcH
Q 048394 352 DMRLADVIIRAYLQKDMY 369 (485)
Q Consensus 352 ~~~~~~~l~~~~~~~~~~ 369 (485)
-......|+..++..|..
T Consensus 970 r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHhCCCh
Confidence 234455555555554443
No 255
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.41 E-value=5 Score=34.79 Aligned_cols=138 Identities=8% Similarity=-0.043 Sum_probs=84.7
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHH----HHHHHhcccccCCchhHH
Q 048394 318 NTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALI----FNNAKKRANASARFFKSR 393 (485)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~~~~~~~~~~p~~~~~ 393 (485)
...|.++..-|.+.+++++|.+++..-.. .+.+.|+...|-++ ++-..+.++ .++....
T Consensus 33 hQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~--~~~~~~~ 95 (312)
T 2wpv_A 33 HQTLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEV--KVDDISV 95 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTC--CCSHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCC--CCCHHHH
Confidence 34455667778888888888877664322 24455666555554 444555677 7888888
Q ss_pred HHHHHHHHhcccHH-HHHHHHHHHHHHhhhcC--CCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCC-CCHHHHHHH
Q 048394 394 ESFMIYYLRSRQLD-LALNEMEAALSEAKQFH--WRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNC-LDFSAYSLL 469 (485)
Q Consensus 394 ~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 469 (485)
..++..+.....-+ .=.++++++++-....+ ..-++.....+...|.+.|++.+|+..|- .+. .++..+..+
T Consensus 96 ~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~ 171 (312)
T 2wpv_A 96 ARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDL 171 (312)
T ss_dssp HHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHH
Confidence 88887776655322 23456666665332211 22467778888888999999998887763 122 245555555
Q ss_pred HHHHHHh
Q 048394 470 IKTYIAA 476 (485)
Q Consensus 470 ~~~~~~~ 476 (485)
..-+...
T Consensus 172 l~~w~~~ 178 (312)
T 2wpv_A 172 LWDWLCQ 178 (312)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555444
No 256
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.39 E-value=5.1 Score=34.77 Aligned_cols=73 Identities=12% Similarity=0.130 Sum_probs=36.5
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCCHh-HHHHHHHHHHhc---c-C-CCCcHHHHHHHHHHHHhcccHHHHHHHHH
Q 048394 202 VNQMKQRNISLDNLTYIVWMQSYSHLNDID-GVERVFYEMCNE---C-E-DKCRWTTYSNLASIYVKAELFEKAELALK 274 (485)
Q Consensus 202 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~---~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 274 (485)
++...+.+++++......++..+.....-+ .=.++++.+.+. . + ..-++.....+...|.+.+++.+|+..|-
T Consensus 80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 80 LEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 344444555566555555555444322111 112223333221 1 1 22356666677777777777777777663
No 257
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.32 E-value=1.1 Score=34.47 Aligned_cols=58 Identities=5% Similarity=-0.038 Sum_probs=33.8
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhccCCCCc-------HHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 048394 221 MQSYSHLNDIDGVERVFYEMCNECEDKCR-------WTTYSNLASIYVKAELFEKAELALKKLEE 278 (485)
Q Consensus 221 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 278 (485)
++.+...|.++.|+-+.+.+....+..++ ..++..+++++...+++..|...|++..+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 44555666666666666554442222333 12345566777777777777777777654
No 258
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.18 E-value=0.54 Score=32.40 Aligned_cols=46 Identities=13% Similarity=0.165 Sum_probs=32.1
Q ss_pred cHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 048394 197 KVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCN 242 (485)
Q Consensus 197 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (485)
++.+-++.+-...+.|++.+..+.+++|.+.+++..|.++|+.+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4455555666666777777777777777777777777777777766
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.95 E-value=3.8 Score=34.39 Aligned_cols=54 Identities=13% Similarity=0.019 Sum_probs=34.5
Q ss_pred HHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 048394 328 LAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKR 382 (485)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 382 (485)
..+.|+++++++....-++..+. |...-..+++.+|-.|+++.|..-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 44566666666666666665554 6666666666667677777776666666554
No 260
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.70 E-value=1.8 Score=31.74 Aligned_cols=61 Identities=16% Similarity=0.122 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHH
Q 048394 407 DLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIK 471 (485)
Q Consensus 407 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 471 (485)
-+..+-++.+.... ..|++.+....+++|.+.+|+..|.++++-++....+...+|..+++
T Consensus 70 wElrrglN~l~~~D----lVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYD----LVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSS----BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccc----cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 34455556665554 88999999999999999999999999999998866554555665554
No 261
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.81 E-value=4.9 Score=29.94 Aligned_cols=77 Identities=10% Similarity=-0.021 Sum_probs=49.6
Q ss_pred CCchhHHHHHHHHHHhcc---cHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCH
Q 048394 387 ARFFKSRESFMIYYLRSR---QLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDF 463 (485)
Q Consensus 387 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 463 (485)
.|+..+--.+..++++.. +..+++.+++.+...+ ..-.....-.+.-++.+.|++++|.++.+.+++..|.|.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~----~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA----ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC----CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 455555445555666544 4556778888877753 111333444455678888888888888888888888876
Q ss_pred HHHH
Q 048394 464 SAYS 467 (485)
Q Consensus 464 ~~~~ 467 (485)
.+..
T Consensus 112 QA~~ 115 (144)
T 1y8m_A 112 QVGA 115 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 262
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.52 E-value=3.8 Score=28.19 Aligned_cols=79 Identities=11% Similarity=0.051 Sum_probs=58.7
Q ss_pred HcCChHHHHHHHHHHHhCCCCCChhhHHHHH--HHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHH
Q 048394 88 KFGRYRHALEVIEWMESRKMHFSYTDFAVYL--DLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALA 165 (485)
Q Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 165 (485)
-....++|..+-+++...+. .....+| ..+...|++++|..+.+... .||...|-+|.. .+.|--+++..
T Consensus 19 G~H~HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGE----EEAVQLIRLSSLMNRGDYASALQQGNKLA--YPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHHHHTTSC--CGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCCC--CchHHHHHHHHH--HhcccHHHHHH
Confidence 34578889888888887763 2223333 45678899999999988887 488888887765 47788888888
Q ss_pred HHHHHHhCC
Q 048394 166 LFEKMDELK 174 (485)
Q Consensus 166 ~~~~m~~~~ 174 (485)
.+.++...|
T Consensus 91 rL~~la~sg 99 (116)
T 2p58_C 91 RLNRLARSQ 99 (116)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHhCC
Confidence 887877766
No 263
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=89.07 E-value=12 Score=33.25 Aligned_cols=63 Identities=13% Similarity=0.133 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcC--cHHHHHHHHHHHHhccc
Q 048394 321 YLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKD--MYEEAALIFNNAKKRAN 384 (485)
Q Consensus 321 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~ 384 (485)
...++.-|...++.++|.+.++++...... ...+...+..++-+.+ ..+....++..+...|+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gl 284 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 284 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence 356788888888888888888887543222 2344455555555543 34567777777777766
No 264
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.06 E-value=3.6 Score=28.22 Aligned_cols=79 Identities=14% Similarity=0.037 Sum_probs=57.5
Q ss_pred HcCChHHHHHHHHHHHhCCCCCChhhHHHHH--HHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHH
Q 048394 88 KFGRYRHALEVIEWMESRKMHFSYTDFAVYL--DLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALA 165 (485)
Q Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 165 (485)
-....++|..+-+++...+. .....+| ..+...|++++|..+.+... .||...|-+|.. .+.|--+++..
T Consensus 18 G~H~HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~pdlepw~ALce--~rlGl~s~le~ 89 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLGQ----DEAARLIRISSLANQGRYQEALAFAHGNP--WPALEPWFALCE--WHLGLGAALDR 89 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHGGGTTCC--CGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCCC--CchHHHHHHHHH--HhcccHHHHHH
Confidence 34567888888888877752 2223333 45677889999988888777 488888877764 47788888888
Q ss_pred HHHHHHhCC
Q 048394 166 LFEKMDELK 174 (485)
Q Consensus 166 ~~~~m~~~~ 174 (485)
.+.++...|
T Consensus 90 rL~~la~sg 98 (115)
T 2uwj_G 90 RLAGLGGSS 98 (115)
T ss_dssp HHHHHHTCS
T ss_pred HHHHHHhCC
Confidence 887877765
No 265
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.56 E-value=2.3 Score=38.57 Aligned_cols=56 Identities=14% Similarity=0.092 Sum_probs=36.6
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChhhHHHHHHHhh
Q 048394 256 LASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCNTSNLDAVNRVWGILK 311 (485)
Q Consensus 256 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 311 (485)
++..+...|++++|...+..+....|.+...|..++.++...|+..+|++.|+...
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555566666666666666666666666666667777777777766666666543
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.23 E-value=2.8 Score=35.21 Aligned_cols=57 Identities=12% Similarity=0.094 Sum_probs=38.1
Q ss_pred HHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Q 048394 223 SYSHLNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKP 281 (485)
Q Consensus 223 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 281 (485)
...+.|++++++.....-++ ..|.|...-..++..+|-.|+++.|..-++...+..|
T Consensus 6 ~ll~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p 62 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 62 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred HHHhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 34566777777776666666 5666666666677777777777777777776666555
No 267
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.10 E-value=20 Score=32.82 Aligned_cols=100 Identities=13% Similarity=0.076 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHccCCC--CHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCchhHHHHH
Q 048394 319 TSYLVLLQALAKLNAIDILKQCFEEWESRCSSY--DMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARFFKSRESF 396 (485)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l 396 (485)
.+...+...|.+.|+++.|.+.+.++......+ -...+-.+++.+...+++..+...+.++...-.. .++....+.+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~-~~d~~~~~~l 210 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK-GGDWERRNRY 210 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-CCCTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc-CCCHHHHHHH
Confidence 355667777777777777777777776543322 2455666677777777777777777766543110 1222111111
Q ss_pred ----HHHHHhcccHHHHHHHHHHHHHH
Q 048394 397 ----MIYYLRSRQLDLALNEMEAALSE 419 (485)
Q Consensus 397 ----~~~~~~~g~~~~A~~~~~~~~~~ 419 (485)
...+...+++..|...|-+....
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11123567777777777766554
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.73 E-value=18 Score=33.21 Aligned_cols=99 Identities=13% Similarity=0.108 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHhCCCcccHHHHHHHHHHcC--CCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcHHHHHH--
Q 048394 180 VAFNNLSTMYLRLGQPEKVRPLVNQMKQRN--ISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRWTTYSN-- 255 (485)
Q Consensus 180 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-- 255 (485)
.++..+...|.+.|++++|.+.|.++.... ..--...+-.+++.+...+++..+...+..+.......+++...+.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 367788899999999999999999988752 2333556777888888999999999888887652222333332211
Q ss_pred --HHHHHHhcccHHHHHHHHHHHHh
Q 048394 256 --LASIYVKAELFEKAELALKKLEE 278 (485)
Q Consensus 256 --l~~~~~~~~~~~~A~~~~~~~~~ 278 (485)
-+..+...+++..|...|-....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 12223356788888877776655
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=85.57 E-value=9.5 Score=30.40 Aligned_cols=86 Identities=10% Similarity=0.051 Sum_probs=57.0
Q ss_pred HHHHHHHhhcccCCCHhH---HHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhCCCcccHHHHHHH
Q 048394 129 AAEKYFNGLSEYAKNRYT---YGALLNCYCKELMTERALALFEKMDELKFLGN-TVAFNNLSTMYLRLGQPEKVRPLVNQ 204 (485)
Q Consensus 129 ~a~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 204 (485)
.+.+.|.......-|..- |-..+..+ ..+...++.++|..|...|+--. ..-|......+...|++.+|.++|+.
T Consensus 62 rc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 62 RCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334444444445556553 33333332 24557788999999988776533 34467777788888999999999999
Q ss_pred HHHcCCCccHH
Q 048394 205 MKQRNISLDNL 215 (485)
Q Consensus 205 ~~~~~~~p~~~ 215 (485)
-++.+-.|-..
T Consensus 141 GI~~~A~P~~r 151 (202)
T 3esl_A 141 GAENNCRPYNR 151 (202)
T ss_dssp HHHTTCBSHHH
T ss_pred HHHcCCccHHH
Confidence 88887777543
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.18 E-value=10 Score=27.80 Aligned_cols=59 Identities=12% Similarity=-0.059 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q 048394 371 EAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFF 436 (485)
Q Consensus 371 ~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~ 436 (485)
+..+-++.+...++ .|++......+.+|.+.+++.-|+++++-...+ ..+...+|..++
T Consensus 71 ElrrglN~l~~~Dl--VPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-----~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDL--VPEPKIIDAALRACRRLNDFASAVRILEVVKDK-----AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSB--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TTTCTTHHHHHH
T ss_pred HHHHHHHHHhcccc--CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-----cCCchhhHHHHH
Confidence 44444555555555 666666666666666666666666666666665 334444455444
No 271
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=83.00 E-value=26 Score=31.55 Aligned_cols=167 Identities=12% Similarity=0.037 Sum_probs=108.9
Q ss_pred hhHHHHHHHHHhCCCcccHHHHHHHHHHc-CCCcc---HHHHHHHHHHHHhc-CCHhHHHHHHHHHHhccCCCCcHH---
Q 048394 180 VAFNNLSTMYLRLGQPEKVRPLVNQMKQR-NISLD---NLTYIVWMQSYSHL-NDIDGVERVFYEMCNECEDKCRWT--- 251 (485)
Q Consensus 180 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~---~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~--- 251 (485)
.+...|...|.+.|+.++..+++.....- +.-|- ......++..+... +..+.-.++..+..+.....--+.
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999988877543 12222 33355677777664 445555556555555222221111
Q ss_pred -HHHHHHHHHHhcccHHHHHHHHHHHHh-cCC-CC----hHHHHHHHHHHHhcCChhhHHHHHHHhhhc---CCCChhh-
Q 048394 252 -TYSNLASIYVKAELFEKAELALKKLEE-MKP-RD----RKAYHFLISLYCNTSNLDAVNRVWGILKST---FPPTNTS- 320 (485)
Q Consensus 252 -~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~- 320 (485)
.=..++..|...|++.+|..++..+.+ ... .+ ...+..-+..|...+++.++...+...... .++++..
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 234689999999999999999999888 222 12 344666777888999999999999877542 2122222
Q ss_pred ---HHHHHHHHH-hcCChhHHHHHHHHHHH
Q 048394 321 ---YLVLLQALA-KLNAIDILKQCFEEWES 346 (485)
Q Consensus 321 ---~~~l~~~~~-~~~~~~~a~~~~~~~~~ 346 (485)
...-...+. ..+++..|...|-+..+
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 222333455 78999999888877643
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=80.97 E-value=6 Score=31.54 Aligned_cols=52 Identities=8% Similarity=-0.100 Sum_probs=31.0
Q ss_pred hhhHHHHHHHhhhcCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCC
Q 048394 300 LDAVNRVWGILKSTFPP--TNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSY 351 (485)
Q Consensus 300 ~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 351 (485)
...+..+|..|...++. -...|......+...|++.+|.++|+.-.+.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44666666666665555 44555556666666666666666666666555444
No 273
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=77.68 E-value=21 Score=27.03 Aligned_cols=82 Identities=10% Similarity=-0.001 Sum_probs=45.5
Q ss_pred HHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhCCCcccHHHHHHHHHHc
Q 048394 130 AEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGN-TVAFNNLSTMYLRLGQPEKVRPLVNQMKQR 208 (485)
Q Consensus 130 a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 208 (485)
+.+.|.......-|..-....+...-.. +++.++|..|...|+--. ..-|......+-..|++.+|.++|+.-++.
T Consensus 54 c~~~f~~~~~YknD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 54 LMKEFLDKKKYHNDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HHHHHTTCGGGTTCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhcccccccCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3444544444445555433333322112 236677777776665422 233566666666777777777777777776
Q ss_pred CCCccH
Q 048394 209 NISLDN 214 (485)
Q Consensus 209 ~~~p~~ 214 (485)
+-.|-.
T Consensus 131 ~A~P~~ 136 (152)
T 4a1g_A 131 QAEPRE 136 (152)
T ss_dssp TCBSHH
T ss_pred CCccHH
Confidence 666643
No 274
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=74.27 E-value=17 Score=31.41 Aligned_cols=25 Identities=4% Similarity=0.015 Sum_probs=15.3
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhhcc
Q 048394 115 AVYLDLTAKTNGIAAAEKYFNGLSE 139 (485)
Q Consensus 115 ~~l~~~~~~~g~~~~a~~~~~~~~~ 139 (485)
..++.-|...|+.++|...++++..
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~ 31 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNL 31 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 3455566666666666666666544
No 275
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=74.25 E-value=14 Score=28.87 Aligned_cols=66 Identities=12% Similarity=0.116 Sum_probs=46.3
Q ss_pred CchhHHHHHHhhcCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 048394 42 NEDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMH 108 (485)
Q Consensus 42 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 108 (485)
+...|...|.+-+.++..+..+++.+...|...|.......+....+.|.+. ...+-..+.+.|+.
T Consensus 34 S~~EL~~KL~~kg~~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 34 TRKEVEDKLRSLDIHEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKGID 99 (177)
T ss_dssp CHHHHHTTSGGGTCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTTCC
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcCCC
Confidence 3445666666666677788888899988888777777777777776655443 35566677788864
No 276
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=73.54 E-value=6.9 Score=30.09 Aligned_cols=48 Identities=8% Similarity=0.133 Sum_probs=23.5
Q ss_pred HHHHHHHHHHccCCCC-HHhHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q 048394 337 LKQCFEEWESRCSSYD-MRLADVIIRAYLQKDMYEEAALIFNNAKKRAN 384 (485)
Q Consensus 337 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 384 (485)
+.++|..|...|+... +..|..-...+...|++.+|..+|+.-++.+.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4445555555443322 33444444445555555555555555555544
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=73.52 E-value=5.8 Score=30.03 Aligned_cols=48 Identities=13% Similarity=0.004 Sum_probs=21.8
Q ss_pred HHHHHHHHHHccCCCC-HHhHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q 048394 337 LKQCFEEWESRCSSYD-MRLADVIIRAYLQKDMYEEAALIFNNAKKRAN 384 (485)
Q Consensus 337 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 384 (485)
+.++|..|...|+... +..|..-...+...|++.+|..+|+.-++.+.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4444444444443322 33344444444445555555555555444443
No 278
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=73.45 E-value=29 Score=26.65 Aligned_cols=84 Identities=10% Similarity=0.015 Sum_probs=47.2
Q ss_pred HHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhCCCcccHHHHHHHHHH
Q 048394 129 AAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGN-TVAFNNLSTMYLRLGQPEKVRPLVNQMKQ 207 (485)
Q Consensus 129 ~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 207 (485)
.+.+.|.......-|.......|...-.. +.+.++|..|...|+--. ..-|......+-..|++.+|.++|+.-++
T Consensus 48 rc~~~f~~~~~YknD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 48 RAVEALQGEKRYYSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQ 124 (164)
T ss_dssp HHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444445555433333222122 335667777777665433 23356666666777777888877777777
Q ss_pred cCCCccHH
Q 048394 208 RNISLDNL 215 (485)
Q Consensus 208 ~~~~p~~~ 215 (485)
.+-.|-..
T Consensus 125 ~~A~P~~~ 132 (164)
T 2wvi_A 125 QKAEPLER 132 (164)
T ss_dssp TTCBSHHH
T ss_pred cCCCcHHH
Confidence 76666543
No 279
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=71.87 E-value=28 Score=28.35 Aligned_cols=24 Identities=4% Similarity=-0.262 Sum_probs=12.7
Q ss_pred HHHhcCcHHHHHHHHHHHHhCCCC
Q 048394 153 CYCKELMTERALALFEKMDELKFL 176 (485)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~ 176 (485)
..++.|+.+.+..+++.+.+.|..
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Confidence 334556666665555555444433
No 280
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=68.94 E-value=28 Score=29.12 Aligned_cols=23 Identities=0% Similarity=-0.218 Sum_probs=12.3
Q ss_pred hcCChhHHHHHHHHHHHccCCCC
Q 048394 330 KLNAIDILKQCFEEWESRCSSYD 352 (485)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~ 352 (485)
..++.....++++.+.+.|..++
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HccccchHHHHHHHHHHcCCCCC
Confidence 34554444556666666655443
No 281
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=64.64 E-value=48 Score=26.86 Aligned_cols=85 Identities=12% Similarity=0.046 Sum_probs=36.2
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhhCCHHHHHHHHHhhcc-cCCCHhHHHHHHHHHHhcCcH
Q 048394 84 RSLRKFGRYRHALEVIEWMESRKMHFSYTD--FAVYLDLTAKTNGIAAAEKYFNGLSE-YAKNRYTYGALLNCYCKELMT 160 (485)
Q Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~ 160 (485)
...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+..+++.-.. ..++..-++. +...+..|+.
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~ 92 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA-AHLACEHRSP 92 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH-HHHHHHcCCH
Confidence 334555666666666655544443332211 11223334445666555555543222 1112222222 2233445565
Q ss_pred HHHHHHHHH
Q 048394 161 ERALALFEK 169 (485)
Q Consensus 161 ~~A~~~~~~ 169 (485)
+-+..+++.
T Consensus 93 ~~~~~Ll~~ 101 (241)
T 1k1a_A 93 TCLRALLDS 101 (241)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 555444444
No 282
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=63.20 E-value=56 Score=29.70 Aligned_cols=14 Identities=7% Similarity=0.097 Sum_probs=6.1
Q ss_pred HhhCCHHHHHHHHH
Q 048394 122 AKTNGIAAAEKYFN 135 (485)
Q Consensus 122 ~~~g~~~~a~~~~~ 135 (485)
+..|+.+-+.-+++
T Consensus 88 ~~~g~~~~v~~Ll~ 101 (437)
T 1n11_A 88 ARIGHTNMVKLLLE 101 (437)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHh
Confidence 34444444444443
No 283
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=63.00 E-value=9 Score=31.11 Aligned_cols=49 Identities=4% Similarity=0.023 Sum_probs=23.1
Q ss_pred hHHHHHHHhhhcCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCC
Q 048394 302 AVNRVWGILKSTFPP--TNTSYLVLLQALAKLNAIDILKQCFEEWESRCSS 350 (485)
Q Consensus 302 ~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 350 (485)
.+..+|..|...++. -...|......+...|++.+|.++|+.-.+.+-.
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 444455555444444 3344444444444455555555555544444333
No 284
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=62.86 E-value=18 Score=29.37 Aligned_cols=13 Identities=8% Similarity=-0.140 Sum_probs=5.3
Q ss_pred hcCcHHHHHHHHH
Q 048394 365 QKDMYEEAALIFN 377 (485)
Q Consensus 365 ~~~~~~~A~~~~~ 377 (485)
+.|+.+-+..+++
T Consensus 219 ~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 219 QRKNVWMINHLQE 231 (240)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCcHHHHHHHHH
Confidence 3344444443333
No 285
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=62.69 E-value=76 Score=27.40 Aligned_cols=63 Identities=14% Similarity=0.131 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCc--HHHHHHHHHHHHhccc
Q 048394 321 YLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDM--YEEAALIFNNAKKRAN 384 (485)
Q Consensus 321 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~ 384 (485)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+....++..+.+.|+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ 233 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSST 233 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCC
Confidence 456788888889999999999888543222 23444555555555432 4566678888877776
No 286
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=62.52 E-value=56 Score=27.19 Aligned_cols=58 Identities=14% Similarity=0.050 Sum_probs=24.3
Q ss_pred HHHHhcccHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCC
Q 048394 258 SIYVKAELFEKAELALKKLEE-MKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPP 316 (485)
Q Consensus 258 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 316 (485)
...+..|+.+-+..+++.... ....+..-.+.+.. .+..+......++++.+.+.+..
T Consensus 153 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~ 211 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGAD 211 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCC
Confidence 334455666555555443111 11122222222322 23445544445555555555443
No 287
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=62.33 E-value=21 Score=30.31 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=11.5
Q ss_pred HHHHHHhcccHHHHHHHHHHHH
Q 048394 256 LASIYVKAELFEKAELALKKLE 277 (485)
Q Consensus 256 l~~~~~~~~~~~~A~~~~~~~~ 277 (485)
.+...+..|+.+-+..+++.-.
T Consensus 164 ~L~~A~~~g~~~~v~~Ll~~ga 185 (285)
T 3kea_A 164 CIHITIKNGHVDMMILLLDYMT 185 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHcCC
Confidence 3344445666665555555433
No 288
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=61.60 E-value=44 Score=24.36 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=14.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhh
Q 048394 288 HFLISLYCNTSNLDAVNRVWGILK 311 (485)
Q Consensus 288 ~~l~~~~~~~~~~~~a~~~~~~~~ 311 (485)
..++.-|...|+.++|.+.++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 445555656666666666666553
No 289
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=59.86 E-value=48 Score=24.18 Aligned_cols=64 Identities=13% Similarity=0.132 Sum_probs=41.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcC--cHHHHHHHHHHHHhccc
Q 048394 320 SYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKD--MYEEAALIFNNAKKRAN 384 (485)
Q Consensus 320 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~ 384 (485)
....++.-|...|+.++|.+.++++...... ...+...+..++-+.+ ..+.+..++..+...|+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 3456788888889999999888887533222 3344455555655543 24567777777777665
No 290
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=59.74 E-value=35 Score=25.82 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=13.6
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhh
Q 048394 288 HFLISLYCNTSNLDAVNRVWGILK 311 (485)
Q Consensus 288 ~~l~~~~~~~~~~~~a~~~~~~~~ 311 (485)
..++.-|...|+.++|.+.++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 445555555566666666655553
No 291
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.64 E-value=52 Score=30.83 Aligned_cols=69 Identities=7% Similarity=0.066 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCC-CCcHH--H-HHHHHHHHHhcccHHHHHHHHHHHHhcCCCC
Q 048394 214 NLTYIVWMQSYSHLNDIDGVERVFYEMCNECED-KCRWT--T-YSNLASIYVKAELFEKAELALKKLEEMKPRD 283 (485)
Q Consensus 214 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~--~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 283 (485)
...+|.+++.|...+.++.|..+.....- ... .++.. . +-.++..+.-.+++.+|.+.+..+....|++
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~f-P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEY-PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCS-CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcC-CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 55677778888888888888888887643 111 12211 1 1234566666778888888777776644443
No 292
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=59.33 E-value=41 Score=23.21 Aligned_cols=51 Identities=8% Similarity=-0.216 Sum_probs=25.2
Q ss_pred HHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcC
Q 048394 399 YYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLN 459 (485)
Q Consensus 399 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 459 (485)
.+...|++++|..+.+.. ..||...|..|- -.+.|-.+.++..+.++...+
T Consensus 48 SLmNrG~Yq~Al~l~~~~--------c~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGN--------PWPALEPWFALC--EWHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTC--------CCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCC--------CCchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC
Confidence 345556666665554433 235555555442 244555555555554444433
No 293
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=58.95 E-value=42 Score=23.20 Aligned_cols=51 Identities=10% Similarity=-0.151 Sum_probs=26.5
Q ss_pred HHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcC
Q 048394 399 YYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLN 459 (485)
Q Consensus 399 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 459 (485)
.+...|++++|..+.+.. .-||...|..|- -.+.|-.+.++..+.++...+
T Consensus 49 SLmNrG~Yq~Al~l~~~~--------c~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKL--------AYPDLEPWLALC--EYRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHTTCHHHHHHHHTTS--------CCGGGHHHHHHH--HHHHTCHHHHHHHHHHHTTCC
T ss_pred HHHcchhHHHHHHhcCCC--------CCchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC
Confidence 345566666666555443 235555555552 244555555555554444433
No 294
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=57.12 E-value=57 Score=26.23 Aligned_cols=13 Identities=0% Similarity=-0.067 Sum_probs=5.9
Q ss_pred hhCCHHHHHHHHH
Q 048394 123 KTNGIAAAEKYFN 135 (485)
Q Consensus 123 ~~g~~~~a~~~~~ 135 (485)
+.|+.+....+++
T Consensus 18 ~~g~~~~~~~Ll~ 30 (240)
T 3eu9_A 18 QYGIYERCRELVE 30 (240)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCChHHHHHHHH
Confidence 3444444444444
No 295
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=56.89 E-value=1e+02 Score=27.04 Aligned_cols=235 Identities=11% Similarity=0.002 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 048394 148 GALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHL 227 (485)
Q Consensus 148 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 227 (485)
..++.-|...|+.++|...++++......|..+........-.+....+.+..++..+.+.|+ .+-..+..++
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~----is~~~~~~Gf--- 87 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH----LSTAQYYQGL--- 87 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS----SCHHHHHHHH---
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC----CCHHHHHHHH---
Q ss_pred CCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHhcCChhhHH
Q 048394 228 NDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEE---MKPRDRKAYHFLISLYCNTSNLDAVN 304 (485)
Q Consensus 228 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~ 304 (485)
.++++.+.+-.-..|....+-..+-+.+-....-....++..+.+ ...........++..+.+....+.+.
T Consensus 88 ------~~~~~~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~fl~~vl~~l~~~~g~~~l~ 161 (339)
T 1ug3_A 88 ------YEILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLLLEILGLLCKSMGPKKVG 161 (339)
T ss_dssp ------HHHHHHHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHHHHHHHHHHHHHHCHHHHH
T ss_pred ------HHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHcCHHHHH
Q ss_pred HHHHH----hhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 048394 305 RVWGI----LKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAK 380 (485)
Q Consensus 305 ~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 380 (485)
++|.+ +..-.|++.. +..+.+...++........-......+-...-..|.+.+...-..++....++...
T Consensus 162 ~~~~~s~l~l~~f~P~~~~-----~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ev~~~L~~~l~~~~~~~~i~~~i~~~~ 236 (339)
T 1ug3_A 162 TLWREAGLSWKEFLPEGQD-----IGAFVAEQKVEYTLGEESEAPGQRALPSEELNRQLEKLLKEGSSNQRVFDWIEANL 236 (339)
T ss_dssp HHHHHTTCCGGGTSCTTCC-----HHHHHHHTTCGGGC----------CCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHS
T ss_pred HHHHHcCCCHHHhCCCchh-----HHHHHHHCCceeecCCcccccccccCCHHHHHHHHHHHHHcCCCHHHHHHHHHhcC
Q ss_pred hcccccCCchhHHHHHHHHHHh
Q 048394 381 KRANASARFFKSRESFMIYYLR 402 (485)
Q Consensus 381 ~~~~~~~p~~~~~~~l~~~~~~ 402 (485)
.... .++...-..++.+.++
T Consensus 237 ~~~~--~~~~~~~~~l~~a~~~ 256 (339)
T 1ug3_A 237 SEQQ--IVSNTLVRALMTAVCY 256 (339)
T ss_dssp CHHH--HTCHHHHHHHHHHHHH
T ss_pred Chhh--CChHHHHHHHHHHHHH
No 296
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=56.60 E-value=62 Score=24.44 Aligned_cols=64 Identities=13% Similarity=0.132 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcC--cHHHHHHHHHHHHhccc
Q 048394 320 SYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKD--MYEEAALIFNNAKKRAN 384 (485)
Q Consensus 320 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~ 384 (485)
....++.-|...|+.++|.+.++++...... ...+...+..++-+.+ ..+.+..++..+...++
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 4567888899999999999999988543222 3444555556666532 24567778888877765
No 297
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=56.58 E-value=50 Score=24.62 Aligned_cols=66 Identities=12% Similarity=0.039 Sum_probs=39.8
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCH
Q 048394 61 TGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGI 127 (485)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 127 (485)
..+.+.+.+.|.++++.-.. ++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-+
T Consensus 7 ~~~~~~l~~~g~r~T~qR~~-Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 7 KEALETLKETGVRITPQRHA-ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHHHHHTTCCCCHHHHH-HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 34445566677777665443 3444555566677888888887766555555554556666665543
No 298
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=54.76 E-value=1.1e+02 Score=26.97 Aligned_cols=24 Identities=8% Similarity=0.131 Sum_probs=16.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH
Q 048394 80 EYCVRSLRKFGRYRHALEVIEWME 103 (485)
Q Consensus 80 ~~l~~~~~~~~~~~~A~~~~~~~~ 103 (485)
..++.-|...++.++|...++++.
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 445666777777777777777653
No 299
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=53.28 E-value=74 Score=28.88 Aligned_cols=9 Identities=0% Similarity=-0.012 Sum_probs=3.3
Q ss_pred CCHHHHHHH
Q 048394 125 NGIAAAEKY 133 (485)
Q Consensus 125 g~~~~a~~~ 133 (485)
|+.+.+..+
T Consensus 124 g~~~~v~~L 132 (437)
T 1n11_A 124 GHVETVLAL 132 (437)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 333333333
No 300
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=53.06 E-value=89 Score=25.36 Aligned_cols=67 Identities=12% Similarity=0.216 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCC-HHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCc
Q 048394 319 TSYLVLLQALAKLNAIDILKQCFEEWESRCSSYD-MRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARF 389 (485)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~ 389 (485)
.-|..+---|+.. .+.+..+|..|...|+... ...|......+...|++.+|..+|+.-++.+. .|-
T Consensus 117 ~RyLklWl~Ya~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A--~P~ 184 (223)
T 4aez_C 117 VRYLRIWMQYVNY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA--KPF 184 (223)
T ss_dssp HHHHHHHHHHHTT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--BSH
T ss_pred HHHHHHHHHHHHc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--ccH
Confidence 3333333334442 4678899999998876544 56777788888899999999999999998876 664
No 301
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=49.97 E-value=50 Score=21.45 Aligned_cols=62 Identities=10% Similarity=-0.023 Sum_probs=37.7
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCH
Q 048394 65 NAYIMEGKTVRKDMLEYCVRSLRKFG-RYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGI 127 (485)
Q Consensus 65 ~~~~~~g~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 127 (485)
+.+.+.|...+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 44556677776554 34455555443 4566777888777665555666666666666666543
No 302
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=49.53 E-value=49 Score=27.99 Aligned_cols=81 Identities=11% Similarity=0.034 Sum_probs=39.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCc
Q 048394 289 FLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDM 368 (485)
Q Consensus 289 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 368 (485)
+.+...+..|..+-+.-+++.-..-...+....+..+...+..|+. ++.+.+.+.|..++..... -+..|+
T Consensus 163 t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~~-----a~~~~~ 233 (285)
T 3kea_A 163 SCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSANLE-----NVLLDD 233 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTTGG-----GGTTTC
T ss_pred cHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCChh-----hhhcCC
Confidence 3344455677777666666654333333322222223333445554 4555566667766654321 133455
Q ss_pred HHHHHHHHHH
Q 048394 369 YEEAALIFNN 378 (485)
Q Consensus 369 ~~~A~~~~~~ 378 (485)
.+-+.-+++.
T Consensus 234 ~~iv~~Ll~~ 243 (285)
T 3kea_A 234 AEIAKMIIEK 243 (285)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 5444444433
No 303
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=49.29 E-value=57 Score=26.54 Aligned_cols=66 Identities=11% Similarity=0.056 Sum_probs=36.5
Q ss_pred CchhHHHHHHhhcCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 048394 42 NEDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMH 108 (485)
Q Consensus 42 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 108 (485)
+...|...|.+-+.++..+..+++.+...|...|.......++...+.+.+ ....+-..+.+.|+.
T Consensus 77 S~~EL~~KL~~kg~~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~ 142 (221)
T 3d5l_A 77 TESDIVKKLKEIDTPEEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIG 142 (221)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCC
Confidence 344566666665555566666666666666665555555555555442222 234455556666653
No 304
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=48.51 E-value=1e+02 Score=24.72 Aligned_cols=22 Identities=18% Similarity=0.099 Sum_probs=13.3
Q ss_pred HHHhhcCChhhHHHHHHHHhhc
Q 048394 437 RFFEEEKDVDGAEEFCKVLKSL 458 (485)
Q Consensus 437 ~~~~~~~~~~~A~~~~~~~~~~ 458 (485)
-.|.+.|.+++|.+++++....
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHhcchHHHHHHHHHHhcC
Confidence 4456666666666666666554
No 305
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=47.35 E-value=1.2e+02 Score=24.95 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHhCCCcccHHHHHHHH
Q 048394 180 VAFNNLSTMYLRLGQPEKVRPLVNQM 205 (485)
Q Consensus 180 ~~~~~l~~~~~~~g~~~~a~~~~~~~ 205 (485)
......+..+.+.|+.++|.++|-+.
T Consensus 92 ~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 92 VHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 33444445555556666665555444
No 306
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=47.08 E-value=1.4e+02 Score=25.82 Aligned_cols=30 Identities=10% Similarity=-0.001 Sum_probs=19.0
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHhhcCCC
Q 048394 432 VDTFFRFFEEEKDVDGAEEFCKVLKSLNCL 461 (485)
Q Consensus 432 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 461 (485)
+..-+..+.+.+++..|..+.+++++.+|.
T Consensus 210 Lr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 210 LQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 344455566667777777777777766654
No 307
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=46.90 E-value=61 Score=24.77 Aligned_cols=65 Identities=9% Similarity=0.026 Sum_probs=40.3
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhhCCH
Q 048394 62 GALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESR--KMHFSYTDFAVYLDLTAKTNGI 127 (485)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 127 (485)
.+.+.+.+.|.+++..- ..++..+...+.+-.|.++++.+.+. +...+..|.-.-+..+.+.|-+
T Consensus 19 ~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 19 RFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 34455566787776654 34456666666777888888888766 5445555544456666666643
No 308
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=45.67 E-value=93 Score=23.30 Aligned_cols=56 Identities=4% Similarity=-0.085 Sum_probs=23.7
Q ss_pred hcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcC
Q 048394 312 STFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKD 367 (485)
Q Consensus 312 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 367 (485)
+.|......-..++..+...+..-.|.++++.+.+.++..+..|.-.-+..+...|
T Consensus 20 ~~g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 20 KNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HCC--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33433333333444444444444555555555555444444333333334444333
No 309
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=45.60 E-value=99 Score=23.57 Aligned_cols=17 Identities=12% Similarity=-0.087 Sum_probs=9.3
Q ss_pred CCCcHHHHHHHHHHhCC
Q 048394 56 TGGSVTGALNAYIMEGK 72 (485)
Q Consensus 56 ~~~~~~~~~~~~~~~g~ 72 (485)
...+..++-+.+.+.|+
T Consensus 30 r~~s~~EL~~KL~~kg~ 46 (162)
T 3dfg_A 30 REHSKKELNRKLQARGI 46 (162)
T ss_dssp SCCCHHHHHHHHHHTTC
T ss_pred hhhhHHHHHHHHHhcCC
Confidence 44555555555555554
No 310
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=44.70 E-value=1.6e+02 Score=25.72 Aligned_cols=79 Identities=10% Similarity=-0.031 Sum_probs=35.3
Q ss_pred HHhcCChhhHHHHHHHhhh-----cCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCHH---hHHHHHHHHHh
Q 048394 294 YCNTSNLDAVNRVWGILKS-----TFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMR---LADVIIRAYLQ 365 (485)
Q Consensus 294 ~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~ 365 (485)
.+..|+.+-+..+++.-.. ....+....+.| ...+..|+.+ +.+.+.+.|..++.. -.+.| ..-+.
T Consensus 180 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~----~v~~Ll~~gad~~~~d~~g~tpL-~~A~~ 253 (364)
T 3ljn_A 180 AMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL-HWAILINWED----VAMRFVEMGIDVNMEDNEHTVPL-YLSVR 253 (364)
T ss_dssp HHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTT-HHHHTTTCHH----HHHHHHTTTCCTTCCCTTSCCHH-HHHHH
T ss_pred HHHcCCHHHHHHHHhcccccccccccccCCCCCcHH-HHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHH-HHHHH
Confidence 3455666655555554322 111122222222 2334556654 344444555544322 12222 33345
Q ss_pred cCcHHHHHHHHHH
Q 048394 366 KDMYEEAALIFNN 378 (485)
Q Consensus 366 ~~~~~~A~~~~~~ 378 (485)
.|+.+-+..+++.
T Consensus 254 ~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 254 AAMVLLTKELLQK 266 (364)
T ss_dssp TCCHHHHHHHHHH
T ss_pred hChHHHHHHHHHc
Confidence 5777666666654
No 311
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=44.52 E-value=1.3e+02 Score=24.75 Aligned_cols=27 Identities=11% Similarity=0.165 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 048394 214 NLTYIVWMQSYSHLNDIDGVERVFYEM 240 (485)
Q Consensus 214 ~~~~~~l~~~~~~~~~~~~a~~~~~~~ 240 (485)
..++.-++..+.+...+-++...|+.+
T Consensus 229 ~Is~~Ef~~~~~~~~~l~~~l~~~d~~ 255 (256)
T 2jul_A 229 VVTIDEFLETCQKDENIMNSMQLFENV 255 (256)
T ss_dssp SBCHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred cEeHHHHHHHHHhCHHHHHHHHhhccc
Confidence 346677777777777777777777654
No 312
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=44.01 E-value=34 Score=20.06 Aligned_cols=39 Identities=18% Similarity=0.150 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 048394 59 SVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVI 99 (485)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 99 (485)
.+.+.+..|...|+.....-+..++.. +.|+...|++++
T Consensus 9 rl~~al~qMl~MGF~negGWLt~LL~~--k~gDI~~aLD~l 47 (52)
T 1q02_A 9 RLIESLSQMLSMGFSDEGGWLTRLLQT--KNYDIGAALDTI 47 (52)
T ss_dssp HHHHHHHHHHTTTCCCTTSHHHHHHHH--TTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCccccHHHHHHHH--ccCCHHHHHHHh
Confidence 456667777777776666555666554 567777776654
No 313
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=43.82 E-value=1.1e+02 Score=23.42 Aligned_cols=9 Identities=11% Similarity=-0.097 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 048394 94 HALEVIEWM 102 (485)
Q Consensus 94 ~A~~~~~~~ 102 (485)
....+|..+
T Consensus 57 ~~~~~f~~~ 65 (183)
T 1s6c_A 57 YAHYLFNAF 65 (183)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 344445444
No 314
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=43.18 E-value=1.3e+02 Score=26.41 Aligned_cols=85 Identities=9% Similarity=0.005 Sum_probs=35.7
Q ss_pred HHHHHhcccHHHHHHHHHHHHh-----cCCCChHHHHHHHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhc
Q 048394 257 ASIYVKAELFEKAELALKKLEE-----MKPRDRKAYHFLISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKL 331 (485)
Q Consensus 257 ~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 331 (485)
+...+..|+.+-+..+++.-.. ....+..-.+.| ...+..|+.+-+.-+++.-..-...+....+.| ...+..
T Consensus 177 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL-~~A~~~ 254 (364)
T 3ljn_A 177 LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL-HWAILINWEDVAMRFVEMGIDVNMEDNEHTVPL-YLSVRA 254 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTT-HHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHH-HHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHH-HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHh
Confidence 3344566777766666654221 111122222222 233456665544444432111111132222333 333455
Q ss_pred CChhHHHHHHHH
Q 048394 332 NAIDILKQCFEE 343 (485)
Q Consensus 332 ~~~~~a~~~~~~ 343 (485)
|+.+-+.-+++.
T Consensus 255 g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 255 AMVLLTKELLQK 266 (364)
T ss_dssp CCHHHHHHHHHH
T ss_pred ChHHHHHHHHHc
Confidence 766655555543
No 315
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=43.10 E-value=1.2e+02 Score=24.11 Aligned_cols=20 Identities=5% Similarity=-0.117 Sum_probs=11.1
Q ss_pred HHHHHhhCCHHHHHHHHHhh
Q 048394 118 LDLTAKTNGIAAAEKYFNGL 137 (485)
Q Consensus 118 ~~~~~~~g~~~~a~~~~~~~ 137 (485)
+...++.|+++....+++.-
T Consensus 10 l~~A~~~g~~~~v~~ll~~~ 29 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILAD 29 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHHhc
Confidence 33444566666666666543
No 316
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=42.25 E-value=2.3e+02 Score=29.21 Aligned_cols=131 Identities=10% Similarity=0.009 Sum_probs=69.5
Q ss_pred HHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcc
Q 048394 117 YLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPE 196 (485)
Q Consensus 117 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 196 (485)
++..|...|..+-|.++...+.. +...--.+..+|...|++++|...|++.- .|+..+....... .
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~---t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~----------~ 881 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS---DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVL----------R 881 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS---SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGG----------H
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccch----------h
Confidence 45556666777766665544443 33333345667777888888888887653 2332221111000 0
Q ss_pred cHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHhccCCCCcH----HHHHHHHHHHHhcc
Q 048394 197 KVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCNECEDKCRW----TTYSNLASIYVKAE 264 (485)
Q Consensus 197 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 264 (485)
....++.... . ......-|..++..+-+.+.++.+.++-+...+ .-...|. ..+..+..+.+..|
T Consensus 882 ~~~~ll~~~e-~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~-~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 882 EFQEIAEKYH-H-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADA-SKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHTT-T-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhccCccc-c-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hcccCCccchHHHHHHHHHHHhhCC
Confidence 0000111000 0 011233677788888888888888888887776 2222233 35566666665543
No 317
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=42.02 E-value=1e+02 Score=22.82 Aligned_cols=61 Identities=3% Similarity=-0.028 Sum_probs=37.3
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 048394 169 KMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDI 230 (485)
Q Consensus 169 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 230 (485)
.+.+.|++++. .-..++..+...+..-.|.++++.+.+.+...+..|..-.++.+...|-+
T Consensus 12 ~l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 45566766444 33445555556666777888888887765555566655566666665543
No 318
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=41.73 E-value=2.2e+02 Score=26.55 Aligned_cols=73 Identities=5% Similarity=-0.034 Sum_probs=40.9
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcccccCCch-hHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHH
Q 048394 359 IIRAYLQKDMYEEAALIFNNAKKRANASARFF-KSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFR 437 (485)
Q Consensus 359 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 437 (485)
|.+...-...++.|...|.++... .|+. ..||.|.-.....|+.-+|+-.|-+.+.. ..|-.....++..
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~----~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-----~~Pf~~a~~nL~~ 228 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQL----VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-----KFPFPAASTNLQK 228 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH----CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-----SBCCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHh----CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc-----CCCChhHHHHHHH
Confidence 344444445566677777666654 5543 34666655555566666666555555544 3455555555555
Q ss_pred HHh
Q 048394 438 FFE 440 (485)
Q Consensus 438 ~~~ 440 (485)
.+.
T Consensus 229 ~f~ 231 (497)
T 1ya0_A 229 ALS 231 (497)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 319
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=41.51 E-value=64 Score=25.14 Aligned_cols=13 Identities=0% Similarity=0.112 Sum_probs=5.8
Q ss_pred hhCCHHHHHHHHH
Q 048394 123 KTNGIAAAEKYFN 135 (485)
Q Consensus 123 ~~g~~~~a~~~~~ 135 (485)
..|+.+....++.
T Consensus 14 ~~g~~~~v~~ll~ 26 (201)
T 3hra_A 14 NQRDTKKVKEILQ 26 (201)
T ss_dssp HTTCHHHHHHHHT
T ss_pred HhccHHHHHHHHH
Confidence 3444444444444
No 320
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=41.50 E-value=63 Score=20.15 Aligned_cols=50 Identities=12% Similarity=0.016 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHH
Q 048394 78 MLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIA 128 (485)
Q Consensus 78 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 128 (485)
.+..++..+.+..-.++++..+++..+.| ..+..+|..-.+.+++..-+.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaReQF~~ 53 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQQFLV 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH
Confidence 34566666666666778888888887777 467777776666666544333
No 321
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=40.62 E-value=1.1e+02 Score=22.82 Aligned_cols=62 Identities=8% Similarity=0.074 Sum_probs=38.0
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 048394 168 EKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDI 230 (485)
Q Consensus 168 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 230 (485)
+.+.+.|++++. .-..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|-+
T Consensus 16 ~~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 345667766443 33455666666666778888888887766555666665566666666543
No 322
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=39.78 E-value=1.1e+02 Score=22.39 Aligned_cols=61 Identities=3% Similarity=-0.037 Sum_probs=37.4
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhCC-CcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 048394 169 KMDELKFLGNTVAFNNLSTMYLRLG-QPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDI 230 (485)
Q Consensus 169 ~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 230 (485)
.+.+.|++++. .-..++..+...+ ..-.|.++++.+.+.+...+..|..-.++.+...|-+
T Consensus 8 ~l~~~g~r~T~-qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTL-PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCH-HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 35566766544 3344555565555 6777888888887776555666655566666665543
No 323
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=39.70 E-value=1.2e+02 Score=22.94 Aligned_cols=112 Identities=12% Similarity=-0.003 Sum_probs=0.0
Q ss_pred CchhHHHHHHhh-----c-----CCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCh
Q 048394 42 NEDKLYKRLSAL-----G-----ATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSY 111 (485)
Q Consensus 42 ~~~~l~~~l~~~-----~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 111 (485)
+...|...|.+- + ..+..+..+++.+.+.|...|.......+....+.| .....+-.++.+.| .+.
T Consensus 21 S~~EL~~kL~~k~~~~~g~e~~~~~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KG--I~~ 96 (159)
T 3c1d_A 21 SEQELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKG--ISR 96 (159)
T ss_dssp CHHHHHHHHHCC-----------CCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTT--CCH
T ss_pred cHHHHHHHHHHHhhcccCccccCCCHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcC--CCH
Q ss_pred hhHHHHHHHHHhhCCHHHHHHHHHhhcc--cCCCHhHHHHHHHHHHhcC
Q 048394 112 TDFAVYLDLTAKTNGIAAAEKYFNGLSE--YAKNRYTYGALLNCYCKEL 158 (485)
Q Consensus 112 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~li~~~~~~~ 158 (485)
.+....+..+-. ...+.|.++..+-.. .+++.....-++..+.+.|
T Consensus 97 ~~i~~al~~~~~-d~~~~a~~l~~kk~~~~~~~~~~~~~K~~~~L~rrG 144 (159)
T 3c1d_A 97 EATEKAMREADI-DWAALARDQATRKYGEPLPTVFSEKVKIQRFLLYRG 144 (159)
T ss_dssp HHHHHHHHHHCC-CHHHHHHHHHHHHHCSSCCCSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCH-hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
No 324
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=39.41 E-value=1.1e+02 Score=22.79 Aligned_cols=59 Identities=5% Similarity=-0.021 Sum_probs=33.6
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 048394 169 KMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLND 229 (485)
Q Consensus 169 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 229 (485)
.+.+.|++++.. -..++..+...+ .-.|.++++.+.+.+...+..|..-.++.+...|-
T Consensus 9 ~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 9 DLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 445566665442 233444444545 66777777777766555555555555555555554
No 325
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=38.88 E-value=1.8e+02 Score=25.53 Aligned_cols=59 Identities=2% Similarity=-0.150 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhhCCHHHHHHHHHhhc
Q 048394 80 EYCVRSLRKFGRYRHALEVIEWMESRKMHF-SYTDFAVYLDLTAKTNGIAAAEKYFNGLS 138 (485)
Q Consensus 80 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 138 (485)
..++....+.+..++...+|+++...-+.. ...--|.++.-+...+..+.-..+++.+.
T Consensus 38 sR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~ 97 (351)
T 3gvo_A 38 SRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIR 97 (351)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred hHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHH
Confidence 344555555566666666666654321100 00112444555555555555555555443
No 326
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=38.67 E-value=1.2e+02 Score=22.64 Aligned_cols=61 Identities=5% Similarity=-0.023 Sum_probs=35.7
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhCC-CcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 048394 169 KMDELKFLGNTVAFNNLSTMYLRLG-QPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDI 230 (485)
Q Consensus 169 ~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 230 (485)
.+.+.|++++.. -..++..+...+ ..-.|.++++.+.+.+...+..|..-.+..+...|-+
T Consensus 7 ~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 355666664442 334455555555 5667777777777765555555555556666665543
No 327
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=38.51 E-value=2.9e+02 Score=26.94 Aligned_cols=223 Identities=9% Similarity=-0.031 Sum_probs=0.0
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHh---
Q 048394 150 LLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSH--- 226 (485)
Q Consensus 150 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--- 226 (485)
....+.-.|++|.|++.+-+. ...|.+.+...+..|.-.+- =+.+......-...-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~-------~~~lls~~~~~~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI-------DSSTRLTKKPKRDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC-------CCcccccCCCcccccHHHHHHHHHHHhh
Q ss_pred cCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHH-----------HHHHHHHhcCCCCh------HHHHH
Q 048394 227 LNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAE-----------LALKKLEEMKPRDR------KAYHF 289 (485)
Q Consensus 227 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-----------~~~~~~~~~~~~~~------~~~~~ 289 (485)
..+...|.++|-.+....|..-....+..+-......++++.-+ .++++....-..+. .....
T Consensus 369 ~td~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~li~l~d~~~~~~~i~~~ 448 (661)
T 2qx5_A 369 YSDPRVAVEYLVLITLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPLLHVRDEKEFLHTITEQ 448 (661)
T ss_dssp TTCHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGGGTCSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcccccccHHHHHHHHHHH
Q ss_pred HHHHHHhcCChhhHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHccCCCCH----------------
Q 048394 290 LISLYCNTSNLDAVNRVWGILKSTFPPTNTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDM---------------- 353 (485)
Q Consensus 290 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------- 353 (485)
...-+...|++++|..+|.-. |+++.+.+++......-+....
T Consensus 449 aA~~ae~~G~~~dAi~LY~La---------------------~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l 507 (661)
T 2qx5_A 449 AARRADEDGRIYDSILLYQLA---------------------EEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNP 507 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHHT---------------------TCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHh---------------------cCHHHHHHHHHHHHHHHhcccccccccccccccccccH
Q ss_pred -HhHHHHHHHHHhc-----CcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHHHHHHHHH
Q 048394 354 -RLADVIIRAYLQK-----DMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLALNEMEAA 416 (485)
Q Consensus 354 -~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (485)
.....++..|... .--......+..+.+. .-+..+...|+++.|++.++++
T Consensus 508 ~~la~~i~~~y~~~~~~~~~~~~~~~~t~~lLl~l------------~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 508 VLLARRMASIYFDNAGISRQIHVKNKEICMLLLNI------------SSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHHHHHHHHHTTCHHHHTTSCHHHHHHHHHHHHH------------HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCchhhhhccHHHHHHHHHHHHH------------HHHHHHHHcCCHHHHHHHHHhC
No 328
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=38.12 E-value=1.4e+02 Score=23.15 Aligned_cols=115 Identities=5% Similarity=0.100 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 048394 160 TERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYE 239 (485)
Q Consensus 160 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 239 (485)
.+.+..+++.+.+.|.--|..--...+....+.|. .....+-.++.+.|+.++. ....+..+......+.|..+.+.
T Consensus 49 ~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~-~G~~~I~~eL~~KGI~~~~--I~~al~~~~~~de~e~a~~l~~K 125 (177)
T 3e3v_A 49 EDYISEIINKLIDLDLINDKNYAESYVRTMMNTSD-KGPKVIKLNLSKKGIDDNI--AEDALILYTDKLQVEKGVTLAEK 125 (177)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHTTTCCHHH--HHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccc-ccHHHHHHHHHHcCCCHHH--HHHHHHhCCchhHHHHHHHHHHH
Confidence 45566777888888877444333455555554443 3456677788888875432 22222221111223445555554
Q ss_pred HHhccCCCCcHHHHHHHHHHHHhcc-cHHHHHHHHHHHH
Q 048394 240 MCNECEDKCRWTTYSNLASIYVKAE-LFEKAELALKKLE 277 (485)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~ 277 (485)
-.......++......++..+.+.| .++.+..+++.+.
T Consensus 126 k~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~ 164 (177)
T 3e3v_A 126 LANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELD 164 (177)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHCc
Confidence 3321122223334445566666666 4555555655543
No 329
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=37.87 E-value=57 Score=25.44 Aligned_cols=11 Identities=27% Similarity=0.326 Sum_probs=5.4
Q ss_pred HHHHHHHHHHH
Q 048394 160 TERALALFEKM 170 (485)
Q Consensus 160 ~~~A~~~~~~m 170 (485)
.+++..+|..+
T Consensus 128 ~~~~~~~~~~~ 138 (191)
T 1y1x_A 128 EQTFQALMRKF 138 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 34455555554
No 330
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=37.44 E-value=98 Score=22.62 Aligned_cols=16 Identities=0% Similarity=-0.095 Sum_probs=6.8
Q ss_pred hhHHHHHHHHHHHccC
Q 048394 334 IDILKQCFEEWESRCS 349 (485)
Q Consensus 334 ~~~a~~~~~~~~~~~~ 349 (485)
.-.|.++++.+.+.++
T Consensus 34 ~~sa~ei~~~l~~~~~ 49 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGE 49 (136)
T ss_dssp SBCHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHhhCC
Confidence 3344444444444433
No 331
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=37.06 E-value=88 Score=23.24 Aligned_cols=19 Identities=11% Similarity=0.038 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHccCCCC
Q 048394 334 IDILKQCFEEWESRCSSYD 352 (485)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~ 352 (485)
.-.|.++++.+.+.++..+
T Consensus 33 h~ta~ei~~~l~~~~~~is 51 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGIN 51 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCC
T ss_pred CCCHHHHHHHHHhhCCCCC
Confidence 3344555555544443333
No 332
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=36.95 E-value=1.6e+02 Score=23.56 Aligned_cols=51 Identities=14% Similarity=0.041 Sum_probs=32.7
Q ss_pred CHhHHHHHHHHHH---hcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC
Q 048394 143 NRYTYGALLNCYC---KELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLG 193 (485)
Q Consensus 143 ~~~~~~~li~~~~---~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 193 (485)
+-..+-.+|+++. +..+.+.|+-.+-+|++.|..|....-..++.+.-.-|
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3334444555554 46889999999999999887776655555555554444
No 333
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=36.49 E-value=1.4e+02 Score=22.71 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=10.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc
Q 048394 323 VLLQALAKLNAIDILKQCFEEWESR 347 (485)
Q Consensus 323 ~l~~~~~~~~~~~~a~~~~~~~~~~ 347 (485)
.++..+...+..-.|.++++.+.+.
T Consensus 37 ~IL~~L~~~~~h~sA~eI~~~l~~~ 61 (162)
T 4ets_A 37 VLLKTLYHSDTHYTPESLYMEIKQA 61 (162)
T ss_dssp HHHHHHHSCCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhh
Confidence 3334444444444444444444444
No 334
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=36.31 E-value=41 Score=27.80 Aligned_cols=21 Identities=14% Similarity=0.320 Sum_probs=9.9
Q ss_pred HhCCCcccHHHHHHHHHHcCC
Q 048394 190 LRLGQPEKVRPLVNQMKQRNI 210 (485)
Q Consensus 190 ~~~g~~~~a~~~~~~~~~~~~ 210 (485)
++.|+.+....+++.+.+.|.
T Consensus 13 ~~~g~~~~v~~ll~~l~~~~~ 33 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTHKK 33 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHHTC
T ss_pred HHhCCHHHHHHHHHHHHhcCC
Confidence 344555555555544444433
No 335
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=35.54 E-value=30 Score=21.10 Aligned_cols=29 Identities=17% Similarity=0.101 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 048394 161 ERALALFEKMDELKFLGNTVAFNNLSTMY 189 (485)
Q Consensus 161 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 189 (485)
++|.+.|.+|+...-.+...+|.-.++..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45666666665443333555676666665
No 336
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=35.49 E-value=1.8e+02 Score=23.78 Aligned_cols=91 Identities=15% Similarity=0.054 Sum_probs=55.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhC--CCCC----ChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHHH
Q 048394 81 YCVRSLRKFGRYRHALEVIEWMESR--KMHF----SYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNCY 154 (485)
Q Consensus 81 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~ 154 (485)
.-+..+...+++++|.+++++..+. +.++ ........+..-.....-.-+..+.+.+.. .++...-...+..+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~-~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS-SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHH
Confidence 4477889999999999999987432 2221 112222233333333333444444444433 45566667777888
Q ss_pred HhcCcHHHHHHHHHHHHh
Q 048394 155 CKELMTERALALFEKMDE 172 (485)
Q Consensus 155 ~~~~~~~~A~~~~~~m~~ 172 (485)
.+.|+.++|.++|=+...
T Consensus 102 ~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHHH
Confidence 899999999998866543
No 337
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=35.31 E-value=1.1e+02 Score=22.97 Aligned_cols=43 Identities=5% Similarity=0.070 Sum_probs=17.9
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhc
Q 048394 324 LLQALAKLN-AIDILKQCFEEWESRCSSYDMRLADVIIRAYLQK 366 (485)
Q Consensus 324 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 366 (485)
++..+...+ ..-.|.++++.+.+.++..+..|.-.-+..+...
T Consensus 22 Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 65 (150)
T 2w57_A 22 ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDA 65 (150)
T ss_dssp HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHC
Confidence 333333333 3444555555555444443433333333333333
No 338
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=35.18 E-value=1e+02 Score=20.69 Aligned_cols=56 Identities=9% Similarity=0.093 Sum_probs=35.6
Q ss_pred cHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhh--------------HHHHHHHHhhcCCCCHHH
Q 048394 405 QLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDG--------------AEEFCKVLKSLNCLDFSA 465 (485)
Q Consensus 405 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------------A~~~~~~~~~~~~~~~~~ 465 (485)
.++.|+.+++++... +..++..|..++..+.....-.. ...++.++.++....+..
T Consensus 9 ~~~~A~~YvnkVK~r-----F~~~p~~Y~~FL~IL~~y~~~~~~~~~~~~~~~~~~~~~~V~~~V~~LF~~h~DL 78 (89)
T 1g1e_B 9 EFNHAINYVNKIKNR-----FQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQEDL 78 (89)
T ss_dssp HHHHHHHHHHHHHHH-----TTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCSCCHHHHHHHHHHHTTTCHHH
T ss_pred CHHHHHHHHHHHHHH-----HccChHHHHHHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHccCHHH
Confidence 357889999999887 76788888888766544322111 235666666655544433
No 339
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=35.12 E-value=2e+02 Score=24.02 Aligned_cols=51 Identities=18% Similarity=0.046 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhhhcCCCccHHHHHHHH-----HHHhhcCChhhHHHHHHHHhh
Q 048394 406 LDLALNEMEAALSEAKQFHWRPMQVTVDTFF-----RFFEEEKDVDGAEEFCKVLKS 457 (485)
Q Consensus 406 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~A~~~~~~~~~ 457 (485)
.+.|.+.|+.+.+..... .+|+..+...|. -.|...++.++|.++.+.+.+
T Consensus 172 ~e~a~~aY~~A~~iA~~~-L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTE-LPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh-CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456777777766532211 777766655554 234567899988887766644
No 340
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=34.61 E-value=1.7e+02 Score=23.00 Aligned_cols=142 Identities=10% Similarity=-0.060 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcccCCCHhHHHHHHHH
Q 048394 74 VRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSEYAKNRYTYGALLNC 153 (485)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~ 153 (485)
++...-...+..+.+.+..+ +...+..+... ++...-...+.++.+.++.+....+.+.+. .+|..+-...+.+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~--~~~~~vr~~a~~a 104 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDER-AVEPLIKALKD---EDAWVRRAAADALGQIGDERAVEPLIKALK--DEDGWVRQSAAVA 104 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGGGHHHHHHHTT--CSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcc-HHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHHHHHHHHHHHc--CCCHHHHHHHHHH
Confidence 45555555666666666533 33333333332 355555555666666665433333333332 2455555555555
Q ss_pred HHhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 048394 154 YCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLND 229 (485)
Q Consensus 154 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 229 (485)
+.+.++.+ +...+.++... ++...-...+.++.+.|..+ +...+..+.. .++..+-...+.++.+.+.
T Consensus 105 L~~~~~~~-~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 105 LGQIGDER-AVEPLIKALKD---EDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHCCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHhCcHH-HHHHHHHHHhC---CCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 55555532 33333333321 34444445555555555432 3333333332 2344444445555555544
No 341
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=34.54 E-value=1e+02 Score=20.64 Aligned_cols=64 Identities=9% Similarity=0.072 Sum_probs=35.3
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHH
Q 048394 59 SVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAA 130 (485)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 130 (485)
.+..+++.+...|+ .+...+..+.. .....++|..+++.+...| ...|..++.++.+.+...-|
T Consensus 23 ~v~~lld~L~~~~v-lt~~~~e~I~~---~~t~~~kar~Lld~l~~kG----~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 23 KTSYIMDHMISDGF-LTISEEEKVRN---EPTQQQRAAMLIKMILKKD----NDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp CHHHHHHHHHHHTS-SCHHHHHHHHT---SSSHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHCCC-CCHHHHHHHHc---CCChHHHHHHHHHHHHHcC----HHHHHHHHHHHHHcCHHHHH
Confidence 35666676666665 34444443333 2455666777777665554 34556666666655544333
No 342
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=33.87 E-value=40 Score=26.59 Aligned_cols=73 Identities=15% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhcCCCccHHHHHHHH-----HHHhhcCChhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCc
Q 048394 406 LDLALNEMEAALSEAKQFHWRPMQVTVDTFF-----RFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLA 480 (485)
Q Consensus 406 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 480 (485)
++.|+.+|+.+... ..+-......|+ ..|.+.|.+++|.+++++.....+.+...-.-|...-.+..-+.
T Consensus 94 LESAl~v~~~I~~e-----~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H 168 (211)
T 3bqo_A 94 LESALMIWGSIEKE-----HDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFH 168 (211)
T ss_dssp HHHHHHHHTTSCSC-----CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHHh-----cccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCc
Q ss_pred chh
Q 048394 481 SDM 483 (485)
Q Consensus 481 ~A~ 483 (485)
.-+
T Consensus 169 ~~l 171 (211)
T 3bqo_A 169 SFF 171 (211)
T ss_dssp HHH
T ss_pred HHH
No 343
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=33.37 E-value=3e+02 Score=25.65 Aligned_cols=68 Identities=12% Similarity=-0.046 Sum_probs=44.3
Q ss_pred cCCHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 048394 227 LNDIDGVERVFYEMCNECEDKCRWTTYSNLASIYVKAELFEKAELALKKLEEMKPRDRKAYHFLISLYCN 296 (485)
Q Consensus 227 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (485)
...++.|...|..+.. -.|.+...|+-|+-.....|+.-.|.-.|-+......|.+.+...+...+.+
T Consensus 165 ~~~~~~A~~~Y~~A~~--~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 165 RNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--hCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 4456677777777766 5666667777777777667766666666555555555566666666666544
No 344
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=33.15 E-value=1.6e+02 Score=22.42 Aligned_cols=17 Identities=12% Similarity=-0.044 Sum_probs=8.4
Q ss_pred hcccHHHHHHHHHHHHH
Q 048394 402 RSRQLDLALNEMEAALS 418 (485)
Q Consensus 402 ~~g~~~~A~~~~~~~~~ 418 (485)
+.|+...|..++.+...
T Consensus 87 ~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 87 DFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHCCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHH
Confidence 44555555555555444
No 345
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=33.11 E-value=90 Score=25.10 Aligned_cols=71 Identities=8% Similarity=0.041 Sum_probs=29.2
Q ss_pred HHHHHHHHhCCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhhCCHHHHHHHHHh
Q 048394 62 GALNAYIMEGKTVRKDM--LEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTD--FAVYLDLTAKTNGIAAAEKYFNG 136 (485)
Q Consensus 62 ~~~~~~~~~g~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~ 136 (485)
++++.+.+.|..++... -...+...+..|+.+-+. .+.+.|..++... -...+...+..|+.+-+..+++.
T Consensus 25 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 99 (237)
T 3b7b_A 25 DICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK----YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSN 99 (237)
T ss_dssp HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHH----HHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHH----HHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Confidence 35555666665443211 112233344555544333 3333443322111 01223333455666555555544
No 346
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=32.64 E-value=1.2e+02 Score=20.75 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=42.6
Q ss_pred CCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCChHHHHH-HHHHH----HhCCCCCChhhHHHH
Q 048394 56 TGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALE-VIEWM----ESRKMHFSYTDFAVY 117 (485)
Q Consensus 56 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~----~~~~~~~~~~~~~~l 117 (485)
-.-++..+.+++..-|+.|+...+..++..|...+. + +.+ +-++| ...|..|+....+.+
T Consensus 24 ~~Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 24 MSASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CCCCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred hhccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 456788889999999999999999999998887775 3 433 33333 345667777665543
No 347
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=31.97 E-value=85 Score=18.83 Aligned_cols=13 Identities=8% Similarity=0.330 Sum_probs=2.8
Q ss_pred HHHHHhCCCcchh
Q 048394 471 KTYIAAGKLASDM 483 (485)
Q Consensus 471 ~~~~~~g~~~~A~ 483 (485)
..+...|+|++|+
T Consensus 48 ~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 48 SSLMNQGDYQRAL 60 (61)
T ss_dssp HHHHHC-------
T ss_pred HHHHccchHhHhh
Confidence 3444555555553
No 348
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=31.27 E-value=1.2e+02 Score=23.47 Aligned_cols=16 Identities=0% Similarity=-0.068 Sum_probs=8.5
Q ss_pred HHhhCCHHHHHHHHHh
Q 048394 121 TAKTNGIAAAEKYFNG 136 (485)
Q Consensus 121 ~~~~g~~~~a~~~~~~ 136 (485)
.+..|+.+-+..+++.
T Consensus 79 A~~~~~~~~~~~Ll~~ 94 (201)
T 3hra_A 79 AGAQGRTEILAYMLKH 94 (201)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhc
Confidence 3445666655555543
No 349
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=30.65 E-value=3.8e+02 Score=25.90 Aligned_cols=49 Identities=8% Similarity=-0.092 Sum_probs=28.7
Q ss_pred HHHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHH
Q 048394 397 MIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFC 452 (485)
Q Consensus 397 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 452 (485)
+..+...|....|...+..+... . +......+.......|.++.+....
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~~-----~--~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVKS-----K--SKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT-----C--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHCCChhhHHHHHHHHHhc-----C--CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 34567788888888888877654 2 2233333444445566666555443
No 350
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=30.33 E-value=1.8e+02 Score=22.14 Aligned_cols=48 Identities=10% Similarity=0.174 Sum_probs=23.1
Q ss_pred CChhHHHHHHHHHHHccCCC--CHHhHHHHHH-H-----HHhcCcHHHHHHHHHHH
Q 048394 332 NAIDILKQCFEEWESRCSSY--DMRLADVIIR-A-----YLQKDMYEEAALIFNNA 379 (485)
Q Consensus 332 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~A~~~~~~~ 379 (485)
|++-+|.++++..-.....+ ....|..||+ . ..+.|+...|..++.+.
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~A 101 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTS 101 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 66666666666554443333 3344444444 1 12345555555555443
No 351
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=29.78 E-value=1.2e+02 Score=24.36 Aligned_cols=18 Identities=17% Similarity=0.150 Sum_probs=9.3
Q ss_pred HHHHhhCCHHHHHHHHHh
Q 048394 119 DLTAKTNGIAAAEKYFNG 136 (485)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~ 136 (485)
...+..|+.+-+..+++.
T Consensus 49 ~~A~~~~~~~~v~~Ll~~ 66 (237)
T 3b7b_A 49 MEAAENNHLEAVKYLIKA 66 (237)
T ss_dssp HHHHHTTCHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHhC
Confidence 333455666655555543
No 352
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=28.97 E-value=2.2e+02 Score=22.59 Aligned_cols=44 Identities=16% Similarity=0.065 Sum_probs=29.8
Q ss_pred HHHHH---HhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC
Q 048394 150 LLNCY---CKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLG 193 (485)
Q Consensus 150 li~~~---~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 193 (485)
+|+++ .+..+.+.|+-.+-+|++.|..|....-..++.+.-.-|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 44444 356788999999999998887766555555555554444
No 353
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=28.86 E-value=36 Score=20.78 Aligned_cols=13 Identities=8% Similarity=-0.015 Sum_probs=5.5
Q ss_pred CChhHHHHHHHHH
Q 048394 332 NAIDILKQCFEEW 344 (485)
Q Consensus 332 ~~~~~a~~~~~~~ 344 (485)
|+++.|...+-+|
T Consensus 37 gdvd~aI~~LL~m 49 (59)
T 1wgl_A 37 GNKDAAINSLLQM 49 (59)
T ss_dssp TCHHHHHHHHHHS
T ss_pred CCHHHHHHHHHcC
Confidence 3444444444443
No 354
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=28.20 E-value=2.3e+02 Score=22.55 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=22.1
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC
Q 048394 156 KELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLG 193 (485)
Q Consensus 156 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 193 (485)
+..+.+.|+-.+-+|++.| .|....-..++.+.-.-|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 4567777777777777777 554444444444443333
No 355
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=27.88 E-value=1.2e+02 Score=22.34 Aligned_cols=47 Identities=13% Similarity=0.125 Sum_probs=27.8
Q ss_pred HHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 048394 183 NNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLND 229 (485)
Q Consensus 183 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 229 (485)
..++..+...+..-.|.++++.+.+.+...+..|..-.++.+...|-
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 44555555555566677777777666555555555555555555554
No 356
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=27.56 E-value=1.2e+02 Score=18.99 Aligned_cols=28 Identities=7% Similarity=0.039 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q 048394 356 ADVIIRAYLQKDMYEEAALIFNNAKKRA 383 (485)
Q Consensus 356 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 383 (485)
++-++..++...-.+++...++++.+.|
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g 32 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG 32 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444555555555556666666665555
No 357
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=27.26 E-value=1.4e+02 Score=21.28 Aligned_cols=41 Identities=7% Similarity=0.035 Sum_probs=19.2
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 048394 202 VNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFYEMCN 242 (485)
Q Consensus 202 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (485)
|+.+....+.|+...-..-+..+...++++.|.++...+..
T Consensus 49 fdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 49 REQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333334444433333333344455666666666655544
No 358
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=27.17 E-value=2.3e+02 Score=22.36 Aligned_cols=79 Identities=13% Similarity=-0.037 Sum_probs=36.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhcc-cCCCHhHHHHHHHHHHhcCcHH
Q 048394 83 VRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLSE-YAKNRYTYGALLNCYCKELMTE 161 (485)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~ 161 (485)
+...++.|+.+....+++.-...-...+....+ .+...+..|+.+-+..+++.-.. ...|..-++.|. ..+..|+.+
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~ 87 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRT-ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLH-IAASAGXDE 87 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCC-HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHH-HHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCC-HHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHH-HHHHcCHHH
Confidence 444566777777776666532211112222222 23344566777766666655332 222322233332 334456655
Q ss_pred HH
Q 048394 162 RA 163 (485)
Q Consensus 162 ~A 163 (485)
-+
T Consensus 88 ~v 89 (231)
T 3aji_A 88 IV 89 (231)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 359
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=26.26 E-value=2.3e+02 Score=22.99 Aligned_cols=20 Identities=15% Similarity=0.046 Sum_probs=8.5
Q ss_pred HhcCcHHHHHHHHHHHHhCC
Q 048394 155 CKELMTERALALFEKMDELK 174 (485)
Q Consensus 155 ~~~~~~~~A~~~~~~m~~~~ 174 (485)
++.|+.+....+++.+.+.|
T Consensus 10 ~~~g~~~~v~~ll~~l~~~g 29 (256)
T 2etb_A 10 VSRGVPEELTGLLEYLRWNS 29 (256)
T ss_dssp HHHTCGGGGTTHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHcC
Confidence 34444444444444444333
No 360
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.26 E-value=4.1e+02 Score=24.92 Aligned_cols=61 Identities=11% Similarity=-0.001 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHhhCCHHHHHHHHHhhccc---CCCHh--HH-HHHHHHHHhcCcHHHHHHHHHHHHh
Q 048394 112 TDFAVYLDLTAKTNGIAAAEKYFNGLSEY---AKNRY--TY-GALLNCYCKELMTERALALFEKMDE 172 (485)
Q Consensus 112 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~--~~-~~li~~~~~~~~~~~A~~~~~~m~~ 172 (485)
..+|.+++.|...+.++.|..+..+..-. .+|.. .| --+...+.-.+++.+|.+.|.....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34566666666666666666666665431 01111 11 1223444455666666666666554
No 361
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=26.00 E-value=2.6e+02 Score=22.56 Aligned_cols=112 Identities=4% Similarity=0.034 Sum_probs=54.4
Q ss_pred cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHH
Q 048394 159 MTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVFY 238 (485)
Q Consensus 159 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 238 (485)
..+.+..+++.+.+.|.--|..--...+....+.+. .....+-.++.+.|+.++.. ...+..+......+.|..+.+
T Consensus 91 ~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~-~G~~~I~~eL~~KGI~~~~I--~~al~~~~~~~e~e~a~~l~~ 167 (221)
T 3d5l_A 91 PEEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDL-KGPGIIRQHLRQKGIGESDI--DDALTQFTPEVQAELAKKLAL 167 (221)
T ss_dssp CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHTTCCHHHH--HHHGGGCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHcCCCHHHH--HHHHHhCCHHHHHHHHHHHHH
Confidence 456667788888888877444333445555444222 35667777888888754322 112211111111233444444
Q ss_pred HHHhccCCCCcHHHHHHHHHHHHhcc-cHHHHHHHH
Q 048394 239 EMCNECEDKCRWTTYSNLASIYVKAE-LFEKAELAL 273 (485)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~ 273 (485)
.-.......++......++..+.+.| .++.+..++
T Consensus 168 Kk~~~~~~~~~~~~k~K~~~~L~rrGFs~~~I~~vl 203 (221)
T 3d5l_A 168 KLFRRYRNQPERRREQKVQQGLTTKGFSSSVYEMIK 203 (221)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred HHHhhccCCChHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 43321112222334555666666665 344444443
No 362
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=25.93 E-value=2.8e+02 Score=22.92 Aligned_cols=51 Identities=12% Similarity=0.105 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCCccHHHHHHHH-----HHHhhcCChhhHHHHHHHHhh
Q 048394 406 LDLALNEMEAALSEAKQFHWRPMQVTVDTFF-----RFFEEEKDVDGAEEFCKVLKS 457 (485)
Q Consensus 406 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~A~~~~~~~~~ 457 (485)
.+.|.+.|+.+.+..... .+|+..+...|+ -.|.-.++.+.|.++.+.+.+
T Consensus 147 ~~~a~~aY~~A~~iA~~~-L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEH-MQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh-CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 466777777766533221 778766655554 334567899988887666644
No 363
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=25.49 E-value=89 Score=23.01 Aligned_cols=29 Identities=7% Similarity=0.142 Sum_probs=12.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHccCCCCH
Q 048394 325 LQALAKLNAIDILKQCFEEWESRCSSYDM 353 (485)
Q Consensus 325 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 353 (485)
+..+...+..-.|.++++.+.+.++..+.
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~ 48 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGL 48 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCH
Confidence 33333333344445555555444443333
No 364
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.19 E-value=1.3e+02 Score=21.73 Aligned_cols=44 Identities=14% Similarity=0.102 Sum_probs=22.7
Q ss_pred HHHHHHhcCChhhHHHHHHHhhhcCCC-ChhhHHHHHHHHHhcCC
Q 048394 290 LISLYCNTSNLDAVNRVWGILKSTFPP-TNTSYLVLLQALAKLNA 333 (485)
Q Consensus 290 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 333 (485)
+++.+...+..-.|.++++.+.+.++. +..|....++.+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 344444444555666666666555555 55444444455544443
No 365
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.19 E-value=1.8e+02 Score=20.98 Aligned_cols=46 Identities=17% Similarity=0.165 Sum_probs=25.8
Q ss_pred HHHHHHHhCCCcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 048394 184 NLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLND 229 (485)
Q Consensus 184 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 229 (485)
.++..+...+..-.|.++++.+.+.+...+..|..-.++.+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3444444555566667777776665544455555555555555553
No 366
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=25.14 E-value=4.1e+02 Score=24.53 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=42.7
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHHhhc
Q 048394 59 SVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKMHFSYTDFAVYLDLTAKTNGIAAAEKYFNGLS 138 (485)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 138 (485)
...-++....+.|.+--...|..-+..+...|++++|-++--...+ |+--+..|.+.+-.+=..-|+..-.+.+|..+.
T Consensus 344 n~~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll 422 (494)
T 1bpo_A 344 NPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILL 422 (494)
T ss_dssp CHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHh
Confidence 3334455555667776677777778888888888888777655433 222344444333222222333333444444433
No 367
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=24.85 E-value=1.7e+02 Score=19.90 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=27.4
Q ss_pred CcHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHhcccHHHH
Q 048394 367 DMYEEAALIFNNAKKRANASARFFKSRESFMIYYLRSRQLDLA 409 (485)
Q Consensus 367 ~~~~~A~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 409 (485)
...+.|.++++.+..+|. ..|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~------~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGS------QALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCT------THHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcCh------HHHHHHHHHHHHcCcHHHH
Confidence 477888888888887764 5777888888766765544
No 368
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=24.81 E-value=1.7e+02 Score=21.60 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=6.9
Q ss_pred HhhCCHHHHHHHHH
Q 048394 122 AKTNGIAAAEKYFN 135 (485)
Q Consensus 122 ~~~g~~~~a~~~~~ 135 (485)
++.|+.+....+++
T Consensus 16 ~~~g~~~~v~~ll~ 29 (165)
T 3twr_A 16 AKAGDVETVKKLCT 29 (165)
T ss_dssp HHHTCHHHHHHHCC
T ss_pred HHhCCHHHHHHHHH
Confidence 34455555555444
No 369
>3fap_B FRAP, FKBP12-rapamycin associated protein; complex, gene therapy, cell cycle; HET: ARD; 1.85A {Homo sapiens} SCOP: a.24.7.1 PDB: 2fap_B* 2rse_B 1nsg_B* 4fap_B* 1aue_A 2gaq_A 1fap_B*
Probab=24.45 E-value=1.5e+02 Score=20.18 Aligned_cols=73 Identities=15% Similarity=0.277 Sum_probs=46.2
Q ss_pred HHHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCC--CHHHHHHHHHHHHH
Q 048394 398 IYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCL--DFSAYSLLIKTYIA 475 (485)
Q Consensus 398 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 475 (485)
..|...++.+..+++++.+.+.-.. .|....=.++...|.+ ++.+|...+++..+.+.. -..+|..+-.+|.+
T Consensus 18 r~~f~~~n~~~m~~~L~pLh~~l~~---~peT~~E~sF~~~fG~--~L~~A~~~~~~y~~t~~~~~l~qAWdiY~~V~~r 92 (94)
T 3fap_B 18 RLYFGERNVKGMFEVLEPLHAMMER---GPQTLKETSFNQAYGR--DLMEAQEWCRKYMKSGNVKDLTQAWDLYYHVFRR 92 (94)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHH---CCCSHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHhc
Confidence 3467778888888888777665211 2544444445555543 588888888888776543 24567776666654
No 370
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=24.13 E-value=1.4e+02 Score=21.38 Aligned_cols=18 Identities=17% Similarity=0.093 Sum_probs=9.2
Q ss_pred HHhhCCHHHHHHHHHhhc
Q 048394 121 TAKTNGIAAAEKYFNGLS 138 (485)
Q Consensus 121 ~~~~g~~~~a~~~~~~~~ 138 (485)
+...++++.|.++.-.+.
T Consensus 71 al~~~dy~~A~~ih~~l~ 88 (118)
T 2yru_A 71 ELLHHQWDAADDIHRSLM 88 (118)
T ss_dssp HHHHTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 344555555555554444
No 371
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.65 E-value=1.5e+02 Score=19.00 Aligned_cols=60 Identities=3% Similarity=-0.037 Sum_probs=35.2
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhCC-CcccHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 048394 169 KMDELKFLGNTVAFNNLSTMYLRLG-QPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLND 229 (485)
Q Consensus 169 ~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 229 (485)
.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|..-.+..+...|-
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3556666654433 44555555544 566777777777766544555565556666665554
No 372
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=23.56 E-value=3.5e+02 Score=23.12 Aligned_cols=48 Identities=10% Similarity=-0.077 Sum_probs=23.4
Q ss_pred HhcCChhHHHHHHHHHHHccCCCCHHhHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCc
Q 048394 329 AKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIFNNAKKRANASARF 389 (485)
Q Consensus 329 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~p~ 389 (485)
+..|+.+ +.+.+.+.|..++..+ .| ..-++.|+.+ +.+.+++.|- .||
T Consensus 281 ~~~g~~~----iv~~Ll~~GAd~n~~~--~L-~~A~~~~~~~----iv~~Ll~~GA--~~d 328 (337)
T 4g8k_A 281 VELKLKK----IAELLCKRGASTDCGD--LV-MTARRNYDHS----LVKVLLSHGA--KED 328 (337)
T ss_dssp HHTTCHH----HHHHHHTTSCSSTTCC--HH-HHHHHTTCHH----HHHHHHHTTC--CC-
T ss_pred HHcCCHH----HHHHHHHCCCCCCCCC--HH-HHHHHcCCHH----HHHHHHHCcC--CCC
Confidence 4456543 4444556676666543 22 2234455544 3444555665 554
No 373
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=22.14 E-value=2.9e+02 Score=24.59 Aligned_cols=70 Identities=14% Similarity=0.099 Sum_probs=43.9
Q ss_pred CCCCCCchhHHHHHHhhcC-CCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 048394 37 PFPTGNEDKLYKRLSALGA-TGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKM 107 (485)
Q Consensus 37 ~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 107 (485)
+...++|+.+++++.+-.. ....+..+++.+.. |..++...-.-++....+.-..++-..+.+.|.+.+.
T Consensus 20 ~~~~~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~-G~~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~~~ 90 (377)
T 3r88_A 20 AASVPSWPQILGRLTDNRDLARGQAAWAMDQIMT-GNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAH 90 (377)
T ss_dssp ----CCHHHHHHHHHTTCCCCTTHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhCC
Confidence 3334689999999877543 66777777777766 4445555444455555566667777777777766553
No 374
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=21.55 E-value=2.8e+02 Score=21.28 Aligned_cols=45 Identities=13% Similarity=0.043 Sum_probs=21.1
Q ss_pred CchhHHHHHHhhcCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048394 42 NEDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSL 86 (485)
Q Consensus 42 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 86 (485)
....+|..+-.-+...=+..++...+...|.+++......++..+
T Consensus 28 ~l~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~l~~~~ 72 (191)
T 1y1x_A 28 ELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMY 72 (191)
T ss_dssp CHHHHHHHHCTTCSSSBCHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 444455554333322334445555553444555555555554444
No 375
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=21.43 E-value=70 Score=20.75 Aligned_cols=22 Identities=9% Similarity=0.104 Sum_probs=11.2
Q ss_pred HHHhhcccCCCHhHHHHHHHHH
Q 048394 133 YFNGLSEYAKNRYTYGALLNCY 154 (485)
Q Consensus 133 ~~~~~~~~~~~~~~~~~li~~~ 154 (485)
++++++..+|++.||+-+...+
T Consensus 25 LL~kIPnLPpgVnTW~qI~el~ 46 (81)
T 2ko4_A 25 LLQRIPNIPPNINTWQQVTALA 46 (81)
T ss_dssp HHTTSSSCCTTTCBHHHHHHHH
T ss_pred HHhhCCCCCCCcchHHHHHHHH
Confidence 4444444555555555554433
No 376
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=21.27 E-value=1.2e+02 Score=24.03 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=10.6
Q ss_pred HHHHHHHhcCcHHHHHHHHHHH
Q 048394 149 ALLNCYCKELMTERALALFEKM 170 (485)
Q Consensus 149 ~li~~~~~~~~~~~A~~~~~~m 170 (485)
.+|.++.+.|++++|.+++.++
T Consensus 37 qvI~GLlql~~ydea~~yI~~~ 58 (192)
T 1ixm_A 37 QLIKGNLSLQKYDRVFEMIEEM 58 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444555555555444444
No 377
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=21.26 E-value=2e+02 Score=19.63 Aligned_cols=32 Identities=3% Similarity=0.067 Sum_probs=16.2
Q ss_pred cHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 048394 197 KVRPLVNQMKQRNISLDNLTYIVWMQSYSHLN 228 (485)
Q Consensus 197 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 228 (485)
.+.++.+++..-|+.|+..+..-++..|...+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 34445555555555555555555555444433
No 378
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=21.04 E-value=3.1e+02 Score=21.63 Aligned_cols=13 Identities=31% Similarity=0.445 Sum_probs=5.9
Q ss_pred hhCCHHHHHHHHH
Q 048394 123 KTNGIAAAEKYFN 135 (485)
Q Consensus 123 ~~g~~~~a~~~~~ 135 (485)
+.|+.+.+..+++
T Consensus 12 ~~g~~~~v~~Ll~ 24 (232)
T 2rfa_A 12 KENDVQALSKLLK 24 (232)
T ss_dssp HTTCHHHHHHHHT
T ss_pred HcCCHHHHHHHHH
Confidence 3444444444444
No 379
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=20.97 E-value=3.2e+02 Score=21.76 Aligned_cols=48 Identities=8% Similarity=-0.006 Sum_probs=20.3
Q ss_pred CCCCcHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHH
Q 048394 55 ATGGSVTGALNAYIME--GKTVRKDMLEYCVRSLRKF-GRYRHALEVIEWM 102 (485)
Q Consensus 55 ~~~~~~~~~~~~~~~~--g~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~ 102 (485)
.....+..+++.+... .-..+...+..++..+... .....+..+|+.+
T Consensus 48 ~s~~ei~~l~~~Fd~~d~~G~I~~~E~~~~l~~l~~~~~~~~~~~~~f~~~ 98 (224)
T 1s1e_A 48 FTKRELQVLYRGFKNECPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAF 98 (224)
T ss_dssp CCHHHHHHHHHHHHHHCTTSCBCHHHHHHHHHTTCTTSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Confidence 3444555555555442 1224444444444333221 1233444555554
No 380
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=20.97 E-value=2.4e+02 Score=20.33 Aligned_cols=47 Identities=15% Similarity=0.065 Sum_probs=33.2
Q ss_pred CCcHHHHHHHHHHhCCCCCHHHHHHH---HHHHHHcCChHHHHHHHHHHH
Q 048394 57 GGSVTGALNAYIMEGKTVRKDMLEYC---VRSLRKFGRYRHALEVIEWME 103 (485)
Q Consensus 57 ~~~~~~~~~~~~~~g~~~~~~~~~~l---~~~~~~~~~~~~A~~~~~~~~ 103 (485)
..++..++..|.....-|.......+ +..+.+.++.+.+..++..+.
T Consensus 38 l~evK~lL~~Wv~s~~~P~~~DV~~l~~yL~~lVeek~Lek~~~vlk~l~ 87 (124)
T 3vu7_H 38 FNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMK 87 (124)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 34667788888877666766555554 555667889999888877763
No 381
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=20.83 E-value=3.4e+02 Score=22.06 Aligned_cols=15 Identities=0% Similarity=0.031 Sum_probs=7.8
Q ss_pred HhhCCHHHHHHHHHh
Q 048394 122 AKTNGIAAAEKYFNG 136 (485)
Q Consensus 122 ~~~g~~~~a~~~~~~ 136 (485)
+..|+.+-+..+++.
T Consensus 44 ~~~g~~~~v~~Ll~~ 58 (261)
T 2xai_A 44 CLGGHLSCVKILLKH 58 (261)
T ss_dssp HHHTCHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHC
Confidence 345555555555544
No 382
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=20.77 E-value=3.5e+02 Score=22.15 Aligned_cols=51 Identities=16% Similarity=0.097 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCCccHHHHHHHH-----HHHhhcCChhhHHHHHHHHhh
Q 048394 406 LDLALNEMEAALSEAKQFHWRPMQVTVDTFF-----RFFEEEKDVDGAEEFCKVLKS 457 (485)
Q Consensus 406 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~A~~~~~~~~~ 457 (485)
.+.|.+.|+.+.+..... .+|+..+...|. -.|.-.++.+.|.++.+.+.+
T Consensus 149 ~e~a~~aY~~A~~iA~~~-L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKE-MPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh-CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 466777777766533221 778776665554 334567899988887666644
No 383
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=20.58 E-value=2.5e+02 Score=20.33 Aligned_cols=72 Identities=15% Similarity=0.277 Sum_probs=36.9
Q ss_pred HHHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCC--CHHHHHHHHHHHHH
Q 048394 399 YYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCL--DFSAYSLLIKTYIA 475 (485)
Q Consensus 399 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 475 (485)
.|...++.+..+++++.+.+.-. ..|....-.+++..+.+ ++.+|...+++..+.+.. -..+|..+-.+|.+
T Consensus 49 lyf~~~n~~~m~~~L~pLh~~l~---~~PeT~~E~sF~~~fG~--~L~~A~~~~~~y~~t~d~~~lnqAWd~Y~~Vf~r 122 (126)
T 2npu_A 49 LYFGERNVKGMFEVLEPLHAMME---RGPQTLKETSFNQAYGR--DLMEAQEWCRKYMKSGNVKDLTQAWDLYYHVFRR 122 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH---HSCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCHHHHHHHHHHHHHHHc---cCCCCHHHHHHHHHHhH--HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Confidence 34556666766666655533210 11444444444444443 466677777666654332 22456666555554
No 384
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=20.51 E-value=2.1e+02 Score=19.38 Aligned_cols=52 Identities=6% Similarity=-0.098 Sum_probs=35.3
Q ss_pred HHhcccHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH-----hhcCChhhHHHHHHHHhh
Q 048394 400 YLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFF-----EEEKDVDGAEEFCKVLKS 457 (485)
Q Consensus 400 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~A~~~~~~~~~ 457 (485)
+...|++-+|-++++..-... ..|....|..+|... .+.|+. |.+++.+...
T Consensus 11 lfn~g~~~eaHEvlE~~W~~~----~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 11 LWRAGRYYEVHEVLEPYWLKA----TGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHhCCChHHHHHHHHHHHhhC----CCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 445688888888888888774 234556676666432 346776 7777777765
No 385
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=20.44 E-value=1.9e+02 Score=19.56 Aligned_cols=25 Identities=12% Similarity=-0.000 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHH
Q 048394 393 RESFMIYYLRSRQLDLALNEMEAAL 417 (485)
Q Consensus 393 ~~~l~~~~~~~g~~~~A~~~~~~~~ 417 (485)
+....+.+.+.|++++|++..+...
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 3444566777888888877666554
Done!