BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048396
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VKB|A Chain A, Crystal Structure Of An Aig2-Like Protein (A2ld1, Ggact,
Mgc7867) From Mus Musculus At 1.90 A Resolution
Length = 161
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 17 ALIFTYGTLKRGFSNHNLIQDLMLTGDAVFRGAYTTSESFPLV-CGPYRVPFLLNIPGSG 75
A IF YGTLKRG NH ++ D G A FRG T ESFPLV G + +P+LL +PG G
Sbjct: 14 AHIFVYGTLKRGQPNHKVMLD-HSHGLAAFRGRGCTVESFPLVIAGEHNIPWLLYLPGKG 72
Query: 76 HPVTGELYAVSAYGLSRMDELEGTSRGHYQR 106
H VTGE+Y V L +D+ E YQR
Sbjct: 73 HCVTGEIYEVDEQMLRFLDDFEDCP-SMYQR 102
>pdb|2KL2|A Chain A, Nmr Solution Structure Of A2ld1 (Gi:13879369)
Length = 149
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 17 ALIFTYGTLKRGFSNHNLIQDLMLTGDAVFRGAYTTSESFPLV-CGPYRVPFLLNIPGSG 75
A IF YGTLKRG NH ++ D G A FRG T ESFPLV G + +P+LL +PG G
Sbjct: 2 AHIFVYGTLKRGQPNHKVMLD-HSHGLAAFRGRGCTVESFPLVIAGEHNIPWLLYLPGKG 60
Query: 76 HPVTGELYAVSAYGLSRMDELEGTSRGHYQR 106
H VTGE+Y V L +D+ E YQR
Sbjct: 61 HCVTGEIYEVDEQMLRFLDDFEDCP-SMYQR 90
>pdb|3JUB|A Chain A, Human Gamma-Glutamylamine Cyclotransferase
pdb|3JUC|A Chain A, Human Gamma-Glutamylamine Cyclotransferase Complex With 5-
Oxoproline
Length = 153
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Query: 17 ALIFTYGTLKRGFSNHNLIQDLMLTGDAVFRGAYTTSESFPLV-CGPYRVPFLLNIPGSG 75
AL+F YGTLKRG NH +++D G A FR T E +PLV G + +P+LL++PGSG
Sbjct: 2 ALVFVYGTLKRGQPNHRVLRD-GAHGSAAFRARGRTLEPYPLVIAGEHNIPWLLHLPGSG 60
Query: 76 HPVTGELYAVSAYGLSRMDELEGTSRGHYQR 106
V GE+YAV L +D+ E YQR
Sbjct: 61 RLVEGEVYAVDERMLRFLDDFESCP-ALYQR 90
>pdb|3JUD|A Chain A, Human Gamma-Glutamylamine Cyclotransferase, E82q Mutant
Length = 153
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Query: 17 ALIFTYGTLKRGFSNHNLIQDLMLTGDAVFRGAYTTSESFPLV-CGPYRVPFLLNIPGSG 75
AL+F YGTLKRG NH +++D G A FR T E +PLV G + +P+LL++PGSG
Sbjct: 2 ALVFVYGTLKRGQPNHRVLRD-GAHGSAAFRARGRTLEPYPLVIAGEHNIPWLLHLPGSG 60
Query: 76 HPVTGELYAVSAYGLSRMDELEGTSRGHYQR 106
V GE+YAV L +D+ + YQR
Sbjct: 61 RLVEGEVYAVDERMLRFLDDFQSCP-ALYQR 90
>pdb|2QIK|A Chain A, Crystal Structure Of Ykqa From Bacillus Subtilis.
Northeast Structural Genomics Target Sr631
Length = 285
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 17 ALIFTYGTLKRGFSNHNLI-QDLMLTGDAVFRGAYTTSESFPLVCGPYRVPFLLNIPGSG 75
+L+F YGTL++ NH+L+ Q + A +G+ ++ P V + N G
Sbjct: 3 SLLFVYGTLRKHEKNHHLLAQSACINEQARTKGSLFAAKEGPTV--------VFNDEDEG 54
Query: 76 HPVTGELYAVSAYGLSRMDEL 96
+ + GE+Y + ++D+
Sbjct: 55 Y-IYGEVYEADELCIHKLDQF 74
>pdb|3C1N|C Chain C, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C20|A Chain A, Crystal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With L-Aspartate
pdb|3C20|B Chain B, Crystal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With L-Aspartate
pdb|3C1M|A Chain A, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|B Chain B, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|C Chain C, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|D Chain D, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1N|A Chain A, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C1N|B Chain B, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C1N|D Chain D, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
Length = 473
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 5 VAAEEEPKKKCRALIFTYGTL-KRGFSNHNLIQDLMLTGDA 44
V +EE+ K +AL +G K+ F N+NLI+D+ + D
Sbjct: 364 VVSEEDVDKALKALKREFGDFGKKSFLNNNLIRDVSVDKDV 404
>pdb|2HMF|A Chain A, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|B Chain B, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|C Chain C, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|D Chain D, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
Length = 469
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 5 VAAEEEPKKKCRALIFTYGTL-KRGFSNHNLIQDLMLTGDA 44
V +EE+ K +AL +G K+ F N+NLI+D+ + D
Sbjct: 363 VVSEEDVDKALKALKREFGDFGKKSFLNNNLIRDVSVDKDV 403
>pdb|1XHS|A Chain A, Solution Nmr Structure Of Protein Ytfp From Escherichia
Coli. Northeast Structural Genomics Consortium Target
Er111
Length = 121
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 12/88 (13%)
Query: 19 IFTYGTLKRGFSNHNLIQDLMLTGDAVFRGAYTTSESFPLVCGPYRVPFLLNIPGSGHPV 78
IF YG+L+ N + + + L GD ++ G Y +PG+G V
Sbjct: 3 IFVYGSLRHKQGNSHWMTNAQLLGD------FSIDNYQLYSLGHYPGA----VPGNG-TV 51
Query: 79 TGELYAVSAYGLSRMDELEGTSRGHYQR 106
GE+Y + L+ +D L T G Y R
Sbjct: 52 HGEVYRIDNATLAELDALR-TRGGEYAR 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,155,597
Number of Sequences: 62578
Number of extensions: 183536
Number of successful extensions: 338
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 326
Number of HSP's gapped (non-prelim): 9
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)