Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>048398
MALCTPTQKLSLAFYAETRRTRTKQSTTVRMVASSDVATYEEGQLERPKWAGETPLSRLV
GALISFKPISAVLKFGARQVLISTAEKNDIPWRAMTKEILESDVYKEMESIQNRSIVYPA
YYLNPFHAYDDGNLSWLAAAEAEAADLSMTRRAIPYASSVDKANDVMRGNWLQAIEKHHQ
QYAGEIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPIS
WVHAIGEDSGLPSKSFDVVSLSYVVCLLSNSEHLSVERCL

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  048398
        (280 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

UNIPROTKB|Q9KMQ6 - symbol:VCA0264 "Transcriptional regula...   111  0.00067   2
TIGR_CMR|VC_A0264 - symbol:VC_A0264 "transcriptional regu...   111  0.00067   2


>UNIPROTKB|Q9KMQ6 [details] [associations]
            symbol:VCA0264 "Transcriptional regulator, putative"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR000551 InterPro:IPR009061
            PRINTS:PR00040 PROSITE:PS50937 SMART:SM00422 GO:GO:0000166
            GO:GO:0003700 GenomeReviews:AE003853_GR InterPro:IPR025714
            Pfam:PF13847 SUPFAM:SSF46955 HSSP:P77565 EMBL:AE004366 PIR:A82481
            RefSeq:NP_232662.1 ProteinModelPortal:Q9KMQ6 DNASU:2612099
            GeneID:2612099 KEGG:vch:VCA0264 PATRIC:20085091 OMA:WLMKQGF
            ProtClustDB:CLSK2484177 Uniprot:Q9KMQ6
        Length = 392

 Score = 111 (44.1 bits), Expect = 0.00067, Sum P(2) = 0.00067
 Identities = 32/75 (42%), Positives = 46/75 (61%)

Query:   186 IRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQL-KEKKGGPRKNPISWVHA 244
             ++ ILDIGC  G+ST  LA+   SA +T +D  P  +A+ QL K+++  P K  IS V  
Sbjct:   185 MQHILDIGCETGLSTLLLAEN-SSAHITAVDNEP--IAIEQLEKQRQHSPWKEQISPV-- 239

Query:   245 IGEDSGLP--SKSFD 257
             +G  + LP  +KSFD
Sbjct:   240 LGSMTALPFAAKSFD 254

 Score = 39 (18.8 bits), Expect = 0.00067, Sum P(2) = 0.00067
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query:    52 GETPLSRLVGALISFKPISAVLKFGARQVLISTAEKNDIPWRAMTKEILESDVYKE 107
             GE P   L  +L    P +A L +   Q     +EK  +  + ++K++ E D+Y +
Sbjct:   102 GERPQRELHHSLSKHAP-NAYLSWLNTQ---GYSEKEALRLKWLSKDMNEHDIYMQ 153


>TIGR_CMR|VC_A0264 [details] [associations]
            symbol:VC_A0264 "transcriptional regulator, putative"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR000551 InterPro:IPR009061
            PRINTS:PR00040 PROSITE:PS50937 SMART:SM00422 GO:GO:0000166
            GO:GO:0003700 GenomeReviews:AE003853_GR InterPro:IPR025714
            Pfam:PF13847 SUPFAM:SSF46955 HSSP:P77565 EMBL:AE004366 PIR:A82481
            RefSeq:NP_232662.1 ProteinModelPortal:Q9KMQ6 DNASU:2612099
            GeneID:2612099 KEGG:vch:VCA0264 PATRIC:20085091 OMA:WLMKQGF
            ProtClustDB:CLSK2484177 Uniprot:Q9KMQ6
        Length = 392

 Score = 111 (44.1 bits), Expect = 0.00067, Sum P(2) = 0.00067
 Identities = 32/75 (42%), Positives = 46/75 (61%)

Query:   186 IRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQL-KEKKGGPRKNPISWVHA 244
             ++ ILDIGC  G+ST  LA+   SA +T +D  P  +A+ QL K+++  P K  IS V  
Sbjct:   185 MQHILDIGCETGLSTLLLAEN-SSAHITAVDNEP--IAIEQLEKQRQHSPWKEQISPV-- 239

Query:   245 IGEDSGLP--SKSFD 257
             +G  + LP  +KSFD
Sbjct:   240 LGSMTALPFAAKSFD 254

 Score = 39 (18.8 bits), Expect = 0.00067, Sum P(2) = 0.00067
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query:    52 GETPLSRLVGALISFKPISAVLKFGARQVLISTAEKNDIPWRAMTKEILESDVYKE 107
             GE P   L  +L    P +A L +   Q     +EK  +  + ++K++ E D+Y +
Sbjct:   102 GERPQRELHHSLSKHAP-NAYLSWLNTQ---GYSEKEALRLKWLSKDMNEHDIYMQ 153


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.131   0.390    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      280       258   0.00087  114 3  11 22  0.48    33
                                                     32  0.48    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  195 KB (2110 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.36u 0.11s 20.47t   Elapsed:  00:00:01
  Total cpu time:  20.36u 0.11s 20.47t   Elapsed:  00:00:01
  Start:  Sat May 11 00:55:02 2013   End:  Sat May 11 00:55:03 2013

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