BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048398
(280 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D2L|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|C Chain C, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|D Chain D, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
Length = 243
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 189 ILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVH 243
I DIGC G +T LAD + +VTG+DLS L +AQ EK ++ WV
Sbjct: 37 IADIGCGTGTATLLLADHY---EVTGVDLSEEXLEIAQ--EKAXETNRHVDFWVQ 86
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 178 HHQQYAGEIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGG 233
HH +L+ GC +G T LA P A++T +D+SP L A+ +K G
Sbjct: 30 HHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNG 85
>pdb|4DCM|A Chain A, Crystal Structure Of Methyltransferase Rlmg Modifying
G1835 Of 23s Rrna In Escherichia Coli
Length = 375
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 188 DILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGP 234
+I+D+GC GV L DK P AKV +D SP +A ++L + P
Sbjct: 225 EIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPXAVASSRLNVETNXP 271
>pdb|3PX2|A Chain A, Structure Of Tylm1 From Streptomyces Fradiae H123n Mutant
In Complex With Sah And Dtdp-Quip3n
pdb|3PX2|D Chain D, Structure Of Tylm1 From Streptomyces Fradiae H123n Mutant
In Complex With Sah And Dtdp-Quip3n
Length = 262
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 10/55 (18%)
Query: 189 ILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVH 243
+LD+ C G+ + LAD F V GL+LS LA+A+ R+NP + +H
Sbjct: 54 LLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIAR--------RRNPDAVLH 98
>pdb|3PX3|A Chain A, Structure Of Tylm1 From Streptomyces Fradiae H123a Mutant
In Complex With Sah And Dtdp-Quip3n
pdb|3PX3|D Chain D, Structure Of Tylm1 From Streptomyces Fradiae H123a Mutant
In Complex With Sah And Dtdp-Quip3n
Length = 263
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 10/55 (18%)
Query: 189 ILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVH 243
+LD+ C G+ + LAD F V GL+LS LA+A+ R+NP + +H
Sbjct: 54 LLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIAR--------RRNPDAVLH 98
>pdb|3PFG|A Chain A, X-Ray Crystal Structure The N,N-Dimethyltransferase Tylm1
From Streptomyces Fradiae In Complex With Sam And
Dtdp-Phenol
pdb|3PFH|A Chain A, X-Ray Crystal Structure The N,N-Dimethyltransferase Tylm1
From Streptomyces Fradiae In Complex With Sah And
Dtdp-Quip3n
pdb|3PFH|D Chain D, X-Ray Crystal Structure The N,N-Dimethyltransferase Tylm1
From Streptomyces Fradiae In Complex With Sah And
Dtdp-Quip3n
Length = 263
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 10/55 (18%)
Query: 189 ILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVH 243
+LD+ C G+ + LAD F V GL+LS LA+A+ R+NP + +H
Sbjct: 54 LLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIAR--------RRNPDAVLH 98
>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|C Chain C, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
Length = 252
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKK 231
E+R +LD+ C G+ T LA++ +V GLDL L VA+ K K+
Sbjct: 41 EVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKE 85
>pdb|3DTN|A Chain A, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei .
pdb|3DTN|B Chain B, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei
Length = 234
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 188 DILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQ 226
DILD+G G+ + L +K+P A T +D+S L +A+
Sbjct: 47 DILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAK 85
>pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Target Btr309
Length = 257
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 189 ILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAV 224
I DIGC G T LAD + ++TG+DL P F+ +
Sbjct: 50 IADIGCGTGGQTLFLAD-YVKGQITGIDLFPDFIEI 84
>pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SVZ|B Chain B, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SXJ|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3SXJ|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
Length = 263
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 189 ILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAV 224
I DIGC G T LAD + ++TG+DL P F+ +
Sbjct: 56 IADIGCGTGGQTLFLAD-YVKGQITGIDLFPDFIEI 90
>pdb|3G07|A Chain A, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|B Chain B, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|C Chain C, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|D Chain D, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|E Chain E, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|F Chain F, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
Length = 292
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 187 RDILDIGCSVGVSTKCLADKFPSAKVTGLDL 217
RD+LD+GC+VG T +A K+ ++ GLD+
Sbjct: 48 RDVLDLGCNVGHLTLSIACKWGPSRXVGLDI 78
>pdb|1P91|A Chain A, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
pdb|1P91|B Chain B, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
Length = 269
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 189 ILDIGCSVGVSTKCLADKFPSAKVTGLDLS 218
+LDIGC G T AD P GLD+S
Sbjct: 89 VLDIGCGEGYYTHAFADALPEITTFGLDVS 118
>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
Length = 211
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 15/107 (14%)
Query: 155 PYASSVDKANDVMRGNWLQAIEKHHQQYAGEIRDILDIGCS---VGVSTKCLADKFPSAK 211
P+AS + +A + G L A ++ A ++ +L G S VG T + P +
Sbjct: 2 PFAS-LAEAYEAWYGTPLGAYVIAEEERA--LKGLLPPGESLLEVGAGTGYWLRRLPYPQ 58
Query: 212 VTGLDLSPYFLAVAQLKEKKGGPRKNP-ISWVHAIGEDSGLPSKSFD 257
G++ S LAV G R+ P +WV A GE P +SFD
Sbjct: 59 KVGVEPSEAXLAV--------GRRRAPEATWVRAWGEALPFPGESFD 97
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 180 QQYAGEIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQ-------LKEKKG 232
Y E +ILDIGC G + LA K VTG+D++ + +A+ L +K G
Sbjct: 25 HNYLQEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTG 82
Query: 233 G 233
G
Sbjct: 83 G 83
>pdb|3JWH|A Chain A, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-C
pdb|3JWH|B Chain B, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-C
Length = 217
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 187 RDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQ 226
R ++D+GC G K L ++TG+D+S L +AQ
Sbjct: 31 RRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQ 70
>pdb|3JWJ|A Chain A, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-Cn
pdb|3JWJ|B Chain B, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-Cn
Length = 202
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 187 RDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQ 226
R ++D+GC G K L ++TG+D+S L +AQ
Sbjct: 21 RRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQ 60
>pdb|2P35|A Chain A, Crystal Structure Of Trans-Aconitate Methyltransferase
From Agrobacterium Tumefaciens
pdb|2P35|B Chain B, Crystal Structure Of Trans-Aconitate Methyltransferase
From Agrobacterium Tumefaciens
Length = 259
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 191 DIGCSVGVSTKCLADKFPSAKVTGLD 216
D+GC G ST+ L D++ +TG+D
Sbjct: 39 DLGCGPGNSTELLTDRYGVNVITGID 64
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 180 QQYAGEIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGP 234
+QY + ++LD+GC G T L+ K G+D+S + + + KE+ GP
Sbjct: 48 EQYVKKEAEVLDVGCGDGYGTYKLSR--TGYKAVGVDISE--VXIQKGKERGEGP 98
>pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. Jannaschii
Length = 194
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 188 DILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLK 228
DILD+GC GV LAD+ S ++ LA +K
Sbjct: 55 DILDLGCGYGVIGIALADEVKSTTXADINRRAIKLAKENIK 95
>pdb|3TEI|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
pdb|4H3P|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
pdb|4H3P|D Chain D, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
Length = 362
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
Query: 47 RPKWAGETPLSRL---VGAL--ISFKPISAVLKFGARQVLISTAEKNDIPWRA------- 94
RP + G+ L +L +G L S + ++ ++ AR L+S KN +PW
Sbjct: 227 RPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADS 286
Query: 95 ----MTKEILESDVYKEMESIQNRSIVYPAYYLNP 125
+ ++L + +K +E Q + Y A Y +P
Sbjct: 287 KALDLLDKMLTFNPHKRIEVEQALAHPYLAQYYDP 321
>pdb|4DZR|A Chain A, The Crystal Structure Of Protein-(Glutamine-N5)
Methyltransferase (Release Factor-Specific) From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius
Dsm 446
Length = 215
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 189 ILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGG 233
++D+G G +A P VT +DLS LAVA+ ++ G
Sbjct: 34 VIDVGTGSGCIAVSIALACPGVSVTAVDLSXDALAVARRNAERFG 78
>pdb|3AV4|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1
pdb|3AV5|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adohcy
pdb|3AV6|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adomet
Length = 1330
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 35 SDVATYEEGQLERPKWAGETP--LSRLVGALISFKPISAVLKFGARQVLISTAEKNDIPW 92
S V +Y+E + + ETP LS + ALI +S + R+V+ +T EK+ P
Sbjct: 275 SQVESYDEAKDD-----DETPIFLSPCMRALIHLAGVSLGQRRATRRVMGATKEKDKAPT 329
Query: 93 RAMTKEIL 100
+A T +++
Sbjct: 330 KATTTKLV 337
>pdb|1SGF|G Chain G, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
pdb|1SGF|Z Chain Z, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
Length = 237
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 12/76 (15%)
Query: 85 AEKNDIPWRAMTKEILESDVYKEMESIQNRSIVYPAYYLNPFHAYDDGNLSWLXXXXXXX 144
EKN PW VY+ + + ++ P + L H YDD WL
Sbjct: 7 CEKNSQPWHVA--------VYRYTQYLCGGVLLDPNWVLTAAHCYDDNYKVWLGKNNLFK 58
Query: 145 XDLSMTRR----AIPY 156
+ S R AIP+
Sbjct: 59 DEPSAQHRFVSKAIPH 74
>pdb|3LET|A Chain A, Crystal Structure Of Fic Domain Containing Ampylator, Vops
pdb|3LET|B Chain B, Crystal Structure Of Fic Domain Containing Ampylator, Vops
Length = 314
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 41 EEGQLERPKWAGETPLSRLVGALISFKPISAVL----KFGARQVLISTAEKNDIPWRAMT 96
E+GQ +R + + +++ + K S VL K ++ V AE + + RAMT
Sbjct: 11 EQGQAQRLQTSSSVEHGQMLFKDANLKTPSDVLNAFAKLDSKMVKSHAAELSQLAERAMT 70
Query: 97 KEILESDVYKEMESI 111
+ +LE+D K ++++
Sbjct: 71 EVMLETDSGKNLKAL 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,505,388
Number of Sequences: 62578
Number of extensions: 273141
Number of successful extensions: 618
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 607
Number of HSP's gapped (non-prelim): 27
length of query: 280
length of database: 14,973,337
effective HSP length: 98
effective length of query: 182
effective length of database: 8,840,693
effective search space: 1609006126
effective search space used: 1609006126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)